Query 001319
Match_columns 1101
No_of_seqs 914 out of 4503
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 21:42:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.7E-72 3.6E-77 555.5 34.8 490 5-660 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 3.1E-58 6.7E-63 439.6 32.1 487 5-657 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 2.1E-56 4.6E-61 474.6 48.6 573 350-1068 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 3.4E-54 7.4E-59 457.8 44.9 540 343-1012 61-621 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.6E-50 5.7E-55 411.3 62.4 567 351-1065 25-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 4.4E-50 9.4E-55 426.3 63.3 555 337-1067 48-711 (893)
7 KOG0318 WD40 repeat stress pro 100.0 1.1E-49 2.4E-54 406.7 60.9 536 340-1010 55-602 (603)
8 KOG0271 Notchless-like WD40 re 100.0 3.9E-54 8.3E-59 421.6 26.9 377 325-916 96-479 (480)
9 KOG0291 WD40-repeat-containing 100.0 1E-48 2.2E-53 415.9 57.7 543 314-1015 57-714 (893)
10 KOG0306 WD40-repeat-containing 100.0 6E-48 1.3E-52 409.9 51.4 570 354-1012 32-666 (888)
11 KOG0306 WD40-repeat-containing 100.0 4.9E-47 1.1E-51 402.9 48.6 568 417-1068 33-625 (888)
12 KOG0271 Notchless-like WD40 re 100.0 1.1E-48 2.3E-53 383.4 28.8 366 401-1008 110-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 9.4E-45 2E-49 381.8 43.9 614 348-1066 41-714 (1080)
14 KOG0273 Beta-transducin family 100.0 3.1E-41 6.7E-46 340.7 35.5 341 333-766 167-522 (524)
15 KOG1539 WD repeat protein [Gen 100.0 8.1E-38 1.7E-42 337.4 54.9 586 350-1066 39-649 (910)
16 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-41 4E-46 337.9 22.6 283 341-657 172-458 (459)
17 KOG1063 RNA polymerase II elon 100.0 9.6E-38 2.1E-42 330.0 49.4 583 337-1010 47-763 (764)
18 KOG0276 Vesicle coat complex C 100.0 2.2E-38 4.7E-43 330.1 42.7 474 343-965 12-490 (794)
19 KOG1408 WD40 repeat protein [F 100.0 1.5E-38 3.3E-43 335.2 40.8 568 343-1011 77-714 (1080)
20 KOG0279 G protein beta subunit 100.0 3.4E-39 7.4E-44 304.7 32.0 293 341-659 12-313 (315)
21 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-40 6.4E-45 329.4 23.6 284 404-765 173-458 (459)
22 KOG0263 Transcription initiati 100.0 2E-38 4.3E-43 342.7 39.3 275 329-616 362-650 (707)
23 KOG0286 G-protein beta subunit 100.0 6.2E-39 1.3E-43 304.6 30.5 293 335-657 45-343 (343)
24 KOG1063 RNA polymerase II elon 100.0 6.9E-37 1.5E-41 323.5 47.3 594 350-1065 20-763 (764)
25 KOG1539 WD repeat protein [Gen 100.0 4.6E-35 9.9E-40 316.2 53.1 559 342-1012 74-650 (910)
26 KOG0276 Vesicle coat complex C 100.0 2E-35 4.2E-40 308.1 44.7 463 402-1008 9-488 (794)
27 KOG0292 Vesicle coat complex C 100.0 3.8E-35 8.2E-40 317.4 48.3 501 343-1010 8-518 (1202)
28 KOG0286 G-protein beta subunit 100.0 9.3E-37 2E-41 289.8 31.6 287 400-765 49-343 (343)
29 KOG2106 Uncharacterized conser 100.0 1.6E-33 3.5E-38 286.8 50.0 496 401-1009 99-625 (626)
30 KOG0295 WD40 repeat-containing 100.0 2.4E-36 5.2E-41 295.7 26.0 287 338-657 102-404 (406)
31 KOG0279 G protein beta subunit 100.0 2.1E-35 4.6E-40 279.1 30.2 292 576-1011 7-314 (315)
32 KOG0315 G-protein beta subunit 100.0 3.9E-35 8.5E-40 272.0 28.8 281 358-672 11-300 (311)
33 KOG0315 G-protein beta subunit 100.0 1.7E-34 3.6E-39 267.9 31.8 295 509-897 11-309 (311)
34 KOG0296 Angio-associated migra 100.0 3.2E-34 7E-39 281.2 34.8 338 446-918 59-398 (399)
35 KOG0273 Beta-transducin family 100.0 1.7E-34 3.6E-39 292.1 31.1 336 402-876 175-523 (524)
36 KOG0296 Angio-associated migra 100.0 7.2E-34 1.6E-38 278.8 34.3 329 401-876 59-398 (399)
37 KOG0285 Pleiotropic regulator 100.0 1.4E-34 3E-39 282.0 26.1 293 334-660 140-440 (460)
38 KOG0645 WD40 repeat protein [G 100.0 2.7E-33 5.9E-38 263.6 31.1 287 340-659 10-311 (312)
39 KOG2106 Uncharacterized conser 100.0 4E-31 8.7E-36 269.4 49.2 524 411-1064 70-625 (626)
40 KOG0265 U5 snRNP-specific prot 100.0 7.2E-34 1.6E-38 271.5 27.0 289 336-656 39-335 (338)
41 KOG0284 Polyadenylation factor 100.0 3.6E-35 7.8E-40 291.5 18.7 282 344-659 96-380 (464)
42 KOG0292 Vesicle coat complex C 100.0 2.1E-31 4.6E-36 288.5 44.0 475 402-1019 5-488 (1202)
43 KOG0316 Conserved WD40 repeat- 100.0 4.6E-33 1E-37 256.0 25.0 289 333-658 5-298 (307)
44 KOG0285 Pleiotropic regulator 100.0 4E-33 8.7E-38 271.8 25.4 294 400-767 145-439 (460)
45 KOG0295 WD40 repeat-containing 100.0 3.2E-33 6.9E-38 273.9 24.7 285 401-765 103-404 (406)
46 KOG0266 WD40 repeat-containing 100.0 9.4E-33 2E-37 312.6 32.4 285 343-659 158-454 (456)
47 KOG2048 WD40 repeat protein [G 100.0 2.1E-29 4.5E-34 267.1 55.1 548 405-1065 24-601 (691)
48 KOG0281 Beta-TrCP (transducin 100.0 7.4E-34 1.6E-38 275.4 16.2 275 343-663 196-481 (499)
49 KOG0265 U5 snRNP-specific prot 100.0 6.4E-32 1.4E-36 258.2 28.1 287 400-763 41-334 (338)
50 KOG0293 WD40 repeat-containing 100.0 2.3E-32 5.1E-37 271.4 23.3 293 485-919 215-514 (519)
51 KOG0263 Transcription initiati 100.0 2.3E-32 5E-37 295.8 25.1 246 405-661 377-651 (707)
52 KOG0645 WD40 repeat protein [G 100.0 4.7E-31 1E-35 248.6 30.6 291 401-767 9-311 (312)
53 KOG0284 Polyadenylation factor 100.0 7E-33 1.5E-37 275.3 18.9 284 405-767 95-380 (464)
54 KOG2048 WD40 repeat protein [G 100.0 1.6E-28 3.6E-33 260.4 51.7 503 450-1068 24-551 (691)
55 KOG0282 mRNA splicing factor [ 100.0 1.3E-32 2.7E-37 280.0 16.8 293 333-657 202-503 (503)
56 cd00200 WD40 WD40 domain, foun 100.0 5.5E-30 1.2E-34 279.0 35.6 282 342-657 7-289 (289)
57 KOG0266 WD40 repeat-containing 100.0 2.1E-30 4.6E-35 293.5 32.5 287 405-766 158-453 (456)
58 KOG0282 mRNA splicing factor [ 100.0 1.4E-31 3.1E-36 272.4 18.8 292 444-874 207-503 (503)
59 KOG0281 Beta-TrCP (transducin 100.0 1.4E-31 3.1E-36 259.6 17.7 280 406-770 197-480 (499)
60 KOG1445 Tumor-specific antigen 100.0 6.7E-30 1.5E-34 266.6 31.0 619 339-1013 74-847 (1012)
61 KOG0278 Serine/threonine kinas 100.0 4.2E-31 9E-36 245.2 18.2 287 338-661 8-299 (334)
62 PLN00181 protein SPA1-RELATED; 100.0 4.1E-29 8.9E-34 306.3 38.8 292 341-658 480-792 (793)
63 KOG0316 Conserved WD40 repeat- 100.0 1.3E-29 2.9E-34 233.3 23.7 247 399-661 10-259 (307)
64 KOG0275 Conserved WD40 repeat- 100.0 1.1E-30 2.4E-35 250.9 16.7 292 736-1063 212-507 (508)
65 cd00200 WD40 WD40 domain, foun 100.0 1.4E-28 3E-33 268.0 35.6 285 401-765 4-289 (289)
66 KOG0641 WD40 repeat protein [G 100.0 3.8E-28 8.3E-33 221.8 31.4 310 336-659 24-349 (350)
67 KOG0278 Serine/threonine kinas 100.0 4.4E-30 9.6E-35 238.4 17.4 256 802-1082 57-316 (334)
68 PLN00181 protein SPA1-RELATED; 100.0 3.9E-28 8.5E-33 297.7 40.0 322 366-766 457-792 (793)
69 KOG0288 WD40 repeat protein Ti 100.0 3.6E-30 7.8E-35 256.6 17.7 295 329-656 159-458 (459)
70 KOG0973 Histone transcription 100.0 4.1E-29 9E-34 280.5 28.2 305 343-661 12-357 (942)
71 KOG0313 Microtubule binding pr 100.0 8E-29 1.7E-33 244.5 26.3 291 332-659 93-418 (423)
72 KOG0640 mRNA cleavage stimulat 100.0 1.9E-28 4.1E-33 234.6 27.5 307 339-658 107-425 (430)
73 KOG0310 Conserved WD40 repeat- 100.0 1.4E-28 3.1E-33 251.2 27.0 282 343-658 25-308 (487)
74 KOG0313 Microtubule binding pr 100.0 1.9E-27 4.1E-32 234.9 26.9 286 449-919 103-419 (423)
75 KOG0643 Translation initiation 100.0 3.1E-27 6.6E-32 222.2 26.5 287 338-660 4-318 (327)
76 KOG0274 Cdc4 and related F-box 100.0 1.7E-27 3.8E-32 266.7 28.9 292 327-661 191-484 (537)
77 KOG1407 WD40 repeat protein [F 100.0 5.7E-27 1.2E-31 219.8 27.5 275 341-650 17-293 (313)
78 KOG0643 Translation initiation 100.0 4.5E-27 9.7E-32 221.1 25.4 300 401-768 5-318 (327)
79 KOG0647 mRNA export protein (c 100.0 7.6E-27 1.6E-31 223.8 26.8 273 343-648 26-312 (347)
80 KOG0973 Histone transcription 100.0 2.7E-27 6E-32 265.9 27.6 304 736-1068 12-358 (942)
81 PTZ00421 coronin; Provisional 100.0 2.1E-26 4.5E-31 258.5 34.9 286 344-640 20-314 (493)
82 KOG0283 WD40 repeat-containing 100.0 1.4E-27 3.1E-32 261.5 24.5 300 342-661 265-578 (712)
83 KOG0640 mRNA cleavage stimulat 100.0 4E-27 8.6E-32 225.6 21.7 292 401-765 107-424 (430)
84 KOG0305 Anaphase promoting com 100.0 1.2E-26 2.6E-31 248.5 27.1 277 348-661 181-463 (484)
85 KOG0308 Conserved WD40 repeat- 100.0 2.6E-27 5.5E-32 249.6 20.9 351 416-885 35-402 (735)
86 KOG0277 Peroxisomal targeting 100.0 6.6E-27 1.4E-31 218.4 20.8 283 348-658 12-308 (311)
87 KOG1445 Tumor-specific antigen 100.0 5.1E-25 1.1E-29 230.4 36.6 597 438-1069 66-848 (1012)
88 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-25 7.1E-30 215.3 32.3 281 343-659 13-303 (311)
89 KOG0299 U3 snoRNP-associated p 100.0 3.4E-26 7.5E-31 232.0 26.2 293 342-656 140-453 (479)
90 KOG0310 Conserved WD40 repeat- 100.0 2.1E-26 4.7E-31 235.5 24.8 286 736-1068 25-312 (487)
91 KOG0772 Uncharacterized conser 99.9 2.7E-26 5.9E-31 234.9 25.0 295 734-1064 164-486 (641)
92 KOG0772 Uncharacterized conser 99.9 1.9E-26 4.2E-31 236.0 23.9 302 333-658 155-486 (641)
93 KOG1446 Histone H3 (Lys4) meth 99.9 8.2E-25 1.8E-29 212.6 33.7 293 488-920 8-305 (311)
94 KOG1407 WD40 repeat protein [F 99.9 9.2E-26 2E-30 211.7 25.4 251 400-663 14-265 (313)
95 KOG0294 WD40 repeat-containing 99.9 1.6E-25 3.4E-30 216.1 27.4 240 802-1067 41-283 (362)
96 KOG0308 Conserved WD40 repeat- 99.9 4.6E-26 1E-30 240.2 23.7 287 349-660 29-328 (735)
97 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.3E-31 232.0 17.8 286 401-764 170-458 (459)
98 KOG0289 mRNA splicing factor [ 99.9 3.8E-25 8.3E-30 222.1 27.9 283 345-658 220-505 (506)
99 KOG0283 WD40 repeat-containing 99.9 1.1E-25 2.3E-30 246.9 25.8 275 735-1013 265-579 (712)
100 KOG0274 Cdc4 and related F-box 99.9 3.4E-25 7.4E-30 248.3 29.7 236 404-661 206-443 (537)
101 KOG2096 WD40 repeat protein [G 99.9 7.3E-25 1.6E-29 211.2 27.5 302 627-1009 84-401 (420)
102 KOG0299 U3 snoRNP-associated p 99.9 2.1E-25 4.6E-30 226.3 25.1 253 402-665 138-416 (479)
103 KOG0305 Anaphase promoting com 99.9 2.7E-25 5.9E-30 238.1 27.3 258 327-617 201-463 (484)
104 PTZ00420 coronin; Provisional 99.9 1.8E-24 3.9E-29 243.1 35.1 255 363-641 50-318 (568)
105 KOG0641 WD40 repeat protein [G 99.9 4.7E-24 1E-28 195.2 30.7 306 736-1065 31-349 (350)
106 KOG0301 Phospholipase A2-activ 99.9 3.4E-25 7.4E-30 235.6 26.7 278 341-661 11-290 (745)
107 KOG0277 Peroxisomal targeting 99.9 1.2E-25 2.7E-30 209.9 20.5 248 338-614 54-308 (311)
108 PTZ00421 coronin; Provisional 99.9 1.3E-24 2.8E-29 244.1 32.2 249 405-661 19-292 (493)
109 KOG2096 WD40 repeat protein [G 99.9 7.8E-25 1.7E-29 211.0 25.5 303 400-831 80-400 (420)
110 KOG1274 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 215.7 51.9 277 342-656 11-297 (933)
111 KOG0268 Sof1-like rRNA process 99.9 6.7E-26 1.4E-30 222.3 15.6 285 446-880 61-349 (433)
112 KOG1963 WD40 repeat protein [G 99.9 1.1E-22 2.5E-27 223.7 42.5 567 405-1068 15-653 (792)
113 KOG0300 WD40 repeat-containing 99.9 4.9E-25 1.1E-29 211.7 20.5 294 337-661 140-478 (481)
114 KOG0294 WD40 repeat-containing 99.9 3.7E-24 8E-29 206.6 26.1 243 401-661 38-283 (362)
115 KOG0268 Sof1-like rRNA process 99.9 9.2E-26 2E-30 221.4 15.2 283 341-661 63-347 (433)
116 KOG1036 Mitotic spindle checkp 99.9 8.7E-24 1.9E-28 204.1 27.2 268 343-649 12-294 (323)
117 KOG1332 Vesicle coat complex C 99.9 5.2E-25 1.1E-29 204.6 18.0 252 401-659 6-286 (299)
118 KOG0289 mRNA splicing factor [ 99.9 5.4E-24 1.2E-28 213.9 25.9 283 406-765 219-504 (506)
119 PTZ00420 coronin; Provisional 99.9 1.9E-23 4E-28 235.0 33.1 251 424-690 50-319 (568)
120 KOG0300 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 207.0 22.1 323 446-919 143-477 (481)
121 KOG0647 mRNA export protein (c 99.9 8E-24 1.7E-28 203.2 25.5 247 403-661 24-283 (347)
122 KOG1963 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 218.6 41.1 518 454-1079 19-599 (792)
123 KOG0639 Transducin-like enhanc 99.9 2.5E-24 5.4E-29 219.5 20.7 291 337-658 412-703 (705)
124 KOG1273 WD40 repeat protein [G 99.9 2.5E-23 5.4E-28 200.4 24.1 298 332-661 12-324 (405)
125 KOG0264 Nucleosome remodeling 99.9 1.3E-23 2.8E-28 213.9 22.4 264 337-616 117-405 (422)
126 KOG0301 Phospholipase A2-activ 99.9 3.2E-23 7E-28 220.7 25.4 278 734-1068 11-291 (745)
127 KOG2055 WD40 repeat protein [G 99.9 4E-23 8.7E-28 209.6 24.2 287 344-659 213-512 (514)
128 KOG0646 WD40 repeat protein [G 99.9 5.2E-23 1.1E-27 209.6 24.0 223 406-640 81-330 (476)
129 KOG0639 Transducin-like enhanc 99.9 2.6E-23 5.5E-28 212.2 21.6 283 735-1064 417-703 (705)
130 KOG0646 WD40 repeat protein [G 99.9 6.5E-23 1.4E-27 208.9 24.1 301 513-952 12-335 (476)
131 KOG2055 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 205.3 25.5 289 587-1010 215-512 (514)
132 KOG1274 WD40 repeat protein [G 99.9 3E-22 6.5E-27 220.4 29.2 281 734-1059 10-294 (933)
133 KOG1332 Vesicle coat complex C 99.9 4.8E-23 1E-27 191.6 18.3 253 341-615 8-286 (299)
134 KOG4283 Transcription-coupled 99.9 5.5E-22 1.2E-26 189.3 25.4 300 342-658 41-364 (397)
135 KOG1273 WD40 repeat protein [G 99.9 4.7E-22 1E-26 191.7 24.4 294 409-877 26-323 (405)
136 KOG1538 Uncharacterized conser 99.9 5.7E-22 1.2E-26 208.9 26.7 496 346-961 14-520 (1081)
137 KOG1036 Mitotic spindle checkp 99.9 1.6E-21 3.4E-26 188.6 26.6 241 405-661 12-264 (323)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.4E-20 3.1E-25 206.2 38.2 278 598-1019 2-288 (300)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-20 5.2E-25 204.4 37.0 286 509-946 2-300 (300)
140 KOG0264 Nucleosome remodeling 99.9 7.2E-22 1.6E-26 201.3 22.3 253 402-661 120-406 (422)
141 KOG0650 WD40 repeat nucleolar 99.9 2.8E-21 6.1E-26 202.1 26.3 315 446-915 395-732 (733)
142 KOG4328 WD40 protein [Function 99.9 2.1E-21 4.5E-26 197.2 24.3 293 343-659 185-495 (498)
143 KOG0267 Microtubule severing p 99.9 2.5E-23 5.4E-28 222.3 11.0 235 402-650 24-259 (825)
144 KOG4283 Transcription-coupled 99.9 4.2E-21 9E-26 183.4 24.7 298 631-1009 45-364 (397)
145 KOG0650 WD40 repeat nucleolar 99.9 3.5E-21 7.6E-26 201.4 24.0 241 399-664 393-642 (733)
146 KOG0321 WD40 repeat-containing 99.9 6.5E-21 1.4E-25 201.2 22.4 289 350-661 55-393 (720)
147 KOG0321 WD40 repeat-containing 99.9 1.1E-20 2.3E-25 199.6 23.7 287 750-1068 65-394 (720)
148 KOG0267 Microtubule severing p 99.9 4.6E-22 1E-26 212.7 10.9 232 343-606 27-259 (825)
149 KOG1538 Uncharacterized conser 99.9 4.9E-19 1.1E-23 187.1 33.3 274 453-877 14-294 (1081)
150 KOG0269 WD40 repeat-containing 99.9 3.2E-21 7E-26 208.1 15.7 248 346-618 89-343 (839)
151 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3E-24 174.6 24.5 255 401-659 8-318 (361)
152 KOG1009 Chromatin assembly com 99.9 1.1E-19 2.5E-24 182.0 23.7 303 343-661 12-374 (434)
153 KOG2445 Nuclear pore complex c 99.9 1.9E-19 4.1E-24 173.7 24.1 253 342-616 11-319 (361)
154 KOG0307 Vesicle coat complex C 99.9 6.1E-21 1.3E-25 216.1 16.0 297 347-662 9-330 (1049)
155 KOG0269 WD40 repeat-containing 99.9 2.6E-20 5.6E-25 201.2 19.9 296 344-661 39-342 (839)
156 COG2319 FOG: WD40 repeat [Gene 99.8 3.1E-17 6.8E-22 191.0 46.7 371 402-919 61-443 (466)
157 KOG1034 Transcriptional repres 99.8 1.5E-19 3.2E-24 176.0 21.8 290 342-659 36-383 (385)
158 KOG4378 Nuclear protein COP1 [ 99.8 8.9E-20 1.9E-24 186.4 20.9 216 809-1045 84-304 (673)
159 KOG0270 WD40 repeat-containing 99.8 8.3E-20 1.8E-24 185.1 19.3 240 418-663 192-453 (463)
160 KOG1034 Transcriptional repres 99.8 3.6E-19 7.9E-24 173.3 22.3 298 734-1065 35-383 (385)
161 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 3.1E-21 185.4 49.3 290 339-661 60-361 (466)
162 KOG4497 Uncharacterized conser 99.8 5.5E-19 1.2E-23 171.6 23.1 409 411-911 13-425 (447)
163 KOG2919 Guanine nucleotide-bin 99.8 9.6E-19 2.1E-23 169.8 22.3 287 347-650 52-361 (406)
164 KOG0302 Ribosome Assembly prot 99.8 8.4E-19 1.8E-23 173.8 20.7 263 333-607 140-431 (440)
165 KOG1009 Chromatin assembly com 99.8 9.1E-18 2E-22 168.6 28.2 300 737-1068 13-375 (434)
166 KOG0303 Actin-binding protein 99.8 1.7E-18 3.7E-23 172.6 22.9 253 408-668 29-303 (472)
167 KOG0270 WD40 repeat-containing 99.8 5.6E-19 1.2E-23 179.2 18.9 253 356-620 192-454 (463)
168 KOG1912 WD40 repeat protein [G 99.8 3E-17 6.6E-22 177.1 32.6 496 406-989 15-572 (1062)
169 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-18 4E-23 176.9 21.7 275 367-670 12-291 (673)
170 KOG4328 WD40 protein [Function 99.8 4E-18 8.7E-23 173.5 24.0 297 736-1066 185-496 (498)
171 KOG0302 Ribosome Assembly prot 99.8 2.9E-18 6.2E-23 170.1 21.3 253 802-1062 149-435 (440)
172 KOG1524 WD40 repeat-containing 99.8 4.3E-17 9.3E-22 168.6 30.0 493 404-1012 12-525 (737)
173 KOG2919 Guanine nucleotide-bin 99.8 9.7E-18 2.1E-22 162.9 23.1 228 747-1001 121-361 (406)
174 KOG0303 Actin-binding protein 99.8 2.1E-17 4.5E-22 165.0 23.1 233 401-640 76-320 (472)
175 KOG1912 WD40 repeat protein [G 99.8 1.9E-15 4.1E-20 163.5 38.7 575 343-1019 14-750 (1062)
176 KOG0307 Vesicle coat complex C 99.8 3.1E-18 6.8E-23 194.4 18.4 259 340-618 60-330 (1049)
177 KOG0644 Uncharacterized conser 99.8 1.4E-18 2.9E-23 188.8 12.1 281 337-661 183-470 (1113)
178 KOG1310 WD40 repeat protein [G 99.8 2.4E-17 5.1E-22 171.0 20.4 164 401-571 45-230 (758)
179 KOG4497 Uncharacterized conser 99.8 9.4E-17 2E-21 156.3 23.0 388 349-868 13-424 (447)
180 KOG0649 WD40 repeat protein [G 99.8 1.1E-15 2.4E-20 142.6 26.8 287 738-1063 11-314 (325)
181 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.3E-22 175.2 15.1 264 340-626 289-572 (577)
182 KOG0642 Cell-cycle nuclear pro 99.7 2.1E-17 4.5E-22 173.1 15.3 251 401-661 289-563 (577)
183 KOG0322 G-protein beta subunit 99.7 7.5E-17 1.6E-21 152.5 17.5 308 530-917 6-322 (323)
184 KOG4227 WD40 repeat protein [G 99.7 2.3E-16 4.9E-21 156.8 21.4 296 339-659 51-387 (609)
185 KOG1334 WD40 repeat protein [G 99.7 3.2E-17 6.9E-22 168.2 14.5 293 341-660 139-467 (559)
186 KOG1524 WD40 repeat-containing 99.7 2.5E-15 5.5E-20 155.7 28.3 207 359-613 77-284 (737)
187 PRK11028 6-phosphogluconolacto 99.7 1E-14 2.2E-19 160.8 34.3 274 511-918 5-304 (330)
188 KOG0771 Prolactin regulatory e 99.7 7.7E-17 1.7E-21 163.6 15.0 201 849-1067 148-356 (398)
189 PRK11028 6-phosphogluconolacto 99.7 1.4E-14 2.9E-19 159.8 34.2 273 358-660 3-305 (330)
190 KOG1188 WD40 repeat protein [G 99.7 2.6E-16 5.7E-21 154.6 18.0 282 467-766 42-345 (376)
191 KOG1007 WD repeat protein TSSC 99.7 3.5E-16 7.7E-21 149.7 18.3 206 343-571 122-360 (370)
192 KOG4227 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 151.7 22.6 299 533-918 51-387 (609)
193 KOG0649 WD40 repeat protein [G 99.7 3.1E-15 6.8E-20 139.7 23.9 280 346-656 12-313 (325)
194 KOG2110 Uncharacterized conser 99.7 6.4E-15 1.4E-19 146.7 27.4 242 803-1068 4-251 (391)
195 KOG0322 G-protein beta subunit 99.7 2E-16 4.3E-21 149.6 15.5 283 342-658 12-322 (323)
196 KOG1007 WD repeat protein TSSC 99.7 5.9E-16 1.3E-20 148.2 17.9 228 824-1066 39-290 (370)
197 KOG1517 Guanine nucleotide bin 99.7 2.2E-15 4.7E-20 168.6 25.1 223 402-661 1060-1289(1387)
198 KOG0290 Conserved WD40 repeat- 99.7 4.9E-15 1.1E-19 142.2 24.0 285 341-655 41-361 (364)
199 KOG1517 Guanine nucleotide bin 99.7 3.2E-15 7E-20 167.2 25.7 304 587-1013 1066-1384(1387)
200 PRK01742 tolB translocation pr 99.7 2.6E-15 5.5E-20 170.4 24.3 235 366-640 183-426 (429)
201 KOG1587 Cytoplasmic dynein int 99.7 5.8E-15 1.3E-19 164.4 26.1 269 327-616 226-517 (555)
202 KOG1188 WD40 repeat protein [G 99.7 2.4E-15 5.3E-20 147.9 19.7 274 359-660 42-347 (376)
203 KOG2110 Uncharacterized conser 99.7 8.4E-14 1.8E-18 138.9 30.6 241 406-661 5-250 (391)
204 KOG0644 Uncharacterized conser 99.7 1.8E-16 4E-21 172.5 12.6 289 530-922 182-472 (1113)
205 KOG0771 Prolactin regulatory e 99.7 2.4E-15 5.2E-20 152.9 19.6 199 808-1011 148-355 (398)
206 PF02239 Cytochrom_D1: Cytochr 99.7 1.5E-13 3.3E-18 149.9 33.5 332 465-927 6-356 (369)
207 KOG1832 HIV-1 Vpr-binding prot 99.7 1E-16 2.2E-21 175.0 8.1 216 402-647 1097-1319(1516)
208 KOG0974 WD-repeat protein WDR6 99.7 1.1E-12 2.3E-17 148.5 40.2 174 327-528 111-290 (967)
209 COG4946 Uncharacterized protei 99.7 1.2E-11 2.7E-16 126.9 43.8 416 352-907 44-507 (668)
210 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-13 2.8E-18 150.4 31.9 320 511-975 9-357 (369)
211 KOG1587 Cytoplasmic dynein int 99.6 4.7E-14 1E-18 157.3 27.6 249 405-661 241-518 (555)
212 KOG1240 Protein kinase contain 99.6 4.3E-14 9.4E-19 161.1 26.7 255 402-662 1044-1337(1431)
213 KOG2041 WD40 repeat protein [G 99.6 6.7E-13 1.5E-17 142.4 33.3 574 342-1013 12-622 (1189)
214 KOG0290 Conserved WD40 repeat- 99.6 3E-14 6.6E-19 136.9 20.2 244 341-604 93-355 (364)
215 KOG1523 Actin-related protein 99.6 3.3E-14 7.2E-19 138.8 20.7 236 344-606 10-269 (361)
216 KOG2111 Uncharacterized conser 99.6 6.1E-13 1.3E-17 130.2 28.9 238 408-661 7-258 (346)
217 PRK01742 tolB translocation pr 99.6 3E-14 6.5E-19 161.7 22.4 220 338-596 197-426 (429)
218 KOG1523 Actin-related protein 99.6 8E-14 1.7E-18 136.2 21.2 230 405-645 9-265 (361)
219 KOG1240 Protein kinase contain 99.6 7.3E-14 1.6E-18 159.3 23.7 177 480-661 1034-1227(1431)
220 KOG2139 WD40 repeat protein [G 99.6 6.5E-13 1.4E-17 131.8 25.8 283 345-659 99-431 (445)
221 KOG1334 WD40 repeat protein [G 99.6 2.2E-14 4.8E-19 147.6 15.9 293 401-766 137-465 (559)
222 PRK03629 tolB translocation pr 99.6 6.7E-13 1.5E-17 150.1 29.0 237 368-639 180-427 (429)
223 PF04762 IKI3: IKI3 family; I 99.6 2.6E-09 5.7E-14 129.6 60.9 446 404-968 73-567 (928)
224 KOG1310 WD40 repeat protein [G 99.6 2.9E-14 6.3E-19 148.4 15.4 241 340-624 46-312 (758)
225 KOG2139 WD40 repeat protein [G 99.6 1.3E-12 2.8E-17 129.8 25.5 300 631-1010 100-431 (445)
226 KOG0974 WD-repeat protein WDR6 99.6 4.7E-11 1E-15 135.5 40.8 277 345-661 8-290 (967)
227 PF04762 IKI3: IKI3 family; I 99.6 2.8E-09 6E-14 129.4 58.4 504 343-1010 74-639 (928)
228 KOG1272 WD40-repeat-containing 99.6 2.3E-14 4.9E-19 146.6 11.8 290 346-674 131-424 (545)
229 PRK02889 tolB translocation pr 99.5 7.6E-13 1.7E-17 150.0 25.2 224 402-640 191-425 (427)
230 PRK05137 tolB translocation pr 99.5 1.9E-12 4.1E-17 147.7 28.4 237 367-639 182-432 (435)
231 KOG1272 WD40-repeat-containing 99.5 3.9E-14 8.4E-19 144.9 12.7 233 406-658 129-361 (545)
232 PRK03629 tolB translocation pr 99.5 7.3E-13 1.6E-17 149.8 24.6 236 327-595 181-427 (429)
233 PRK04922 tolB translocation pr 99.5 1.5E-12 3.3E-17 148.2 27.3 238 367-639 184-432 (433)
234 KOG2394 WD40 protein DMR-N9 [G 99.5 3.2E-13 7E-18 140.8 19.4 120 804-924 290-458 (636)
235 KOG2321 WD40 repeat protein [G 99.5 7.5E-13 1.6E-17 139.1 22.0 285 337-660 44-344 (703)
236 PRK02889 tolB translocation pr 99.5 1.1E-12 2.4E-17 148.6 24.1 237 327-595 178-424 (427)
237 PRK04922 tolB translocation pr 99.5 1.1E-12 2.5E-17 149.2 23.3 237 327-595 186-432 (433)
238 KOG2111 Uncharacterized conser 99.5 5.9E-12 1.3E-16 123.4 24.4 239 805-1068 6-259 (346)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 2.8E-13 6E-18 141.3 16.2 153 344-503 219-383 (636)
240 KOG2315 Predicted translation 99.5 2.5E-11 5.3E-16 128.3 30.3 282 344-661 34-346 (566)
241 PRK05137 tolB translocation pr 99.5 2.9E-12 6.2E-17 146.2 25.4 236 327-595 184-432 (435)
242 COG4946 Uncharacterized protei 99.5 4.3E-09 9.2E-14 108.7 43.5 403 327-865 61-507 (668)
243 KOG2041 WD40 repeat protein [G 99.5 6E-11 1.3E-15 127.8 31.3 512 342-919 69-620 (1189)
244 PF10282 Lactonase: Lactonase, 99.5 5.1E-10 1.1E-14 123.1 38.5 208 806-1017 88-331 (345)
245 KOG2315 Predicted translation 99.5 2.5E-10 5.4E-15 120.8 33.1 355 518-990 11-410 (566)
246 KOG2659 LisH motif-containing 99.5 7.2E-13 1.6E-17 126.1 12.8 169 3-182 24-204 (228)
247 COG5354 Uncharacterized protei 99.5 4.3E-11 9.4E-16 124.7 26.6 283 345-663 33-352 (561)
248 KOG3881 Uncharacterized conser 99.4 1.4E-11 3E-16 124.2 21.7 271 344-639 55-341 (412)
249 COG5354 Uncharacterized protei 99.4 2.3E-10 4.9E-15 119.5 30.9 360 521-1002 15-421 (561)
250 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 128.4 23.6 284 449-877 49-344 (703)
251 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.4E-14 116.2 35.8 203 808-1019 108-339 (352)
252 KOG1409 Uncharacterized conser 99.4 1.2E-11 2.5E-16 122.4 19.1 342 576-1011 16-395 (404)
253 KOG1354 Serine/threonine prote 99.4 6.2E-11 1.4E-15 117.1 22.6 357 450-963 24-432 (433)
254 COG2706 3-carboxymuconate cycl 99.4 2E-09 4.3E-14 108.8 33.4 258 736-1015 38-328 (346)
255 PF10282 Lactonase: Lactonase, 99.4 8.1E-10 1.7E-14 121.6 33.6 251 804-1069 36-326 (345)
256 KOG3881 Uncharacterized conser 99.4 4.3E-11 9.4E-16 120.7 19.9 179 745-947 156-342 (412)
257 PRK01029 tolB translocation pr 99.4 1.1E-10 2.5E-15 131.3 25.9 241 327-596 167-425 (428)
258 PRK00178 tolB translocation pr 99.4 2.2E-10 4.7E-15 131.3 28.8 223 402-639 194-427 (430)
259 PRK04792 tolB translocation pr 99.4 1.4E-10 3E-15 131.8 26.7 223 402-639 213-446 (448)
260 KOG1409 Uncharacterized conser 99.4 2.1E-11 4.5E-16 120.6 17.0 350 446-877 19-395 (404)
261 PF08662 eIF2A: Eukaryotic tra 99.4 6E-11 1.3E-15 117.3 20.4 163 409-579 8-185 (194)
262 COG2706 3-carboxymuconate cycl 99.4 2.7E-09 5.8E-14 107.9 32.0 255 803-1073 38-329 (346)
263 KOG2314 Translation initiation 99.4 3.5E-10 7.5E-15 119.0 26.4 238 809-1068 310-576 (698)
264 PF08662 eIF2A: Eukaryotic tra 99.4 6E-11 1.3E-15 117.3 20.1 155 849-1019 9-187 (194)
265 KOG2314 Translation initiation 99.4 1.2E-09 2.6E-14 115.0 29.9 322 540-1011 212-574 (698)
266 PRK00178 tolB translocation pr 99.4 1.2E-10 2.6E-15 133.5 25.3 236 327-595 181-427 (430)
267 PRK01029 tolB translocation pr 99.4 3.8E-10 8.3E-15 127.0 28.7 227 402-641 180-426 (428)
268 TIGR02800 propeller_TolB tol-p 99.4 2.3E-10 5.1E-15 131.2 27.4 210 402-624 185-405 (417)
269 PRK04792 tolB translocation pr 99.3 1.1E-10 2.4E-15 132.6 22.9 224 339-595 212-446 (448)
270 TIGR02800 propeller_TolB tol-p 99.3 1.3E-10 2.7E-15 133.4 23.5 224 327-581 172-405 (417)
271 KOG1354 Serine/threonine prote 99.3 4.9E-10 1.1E-14 110.9 22.5 167 802-969 162-363 (433)
272 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.2E-08 2.6E-13 108.4 30.0 239 812-1068 53-333 (352)
273 KOG4547 WD40 repeat-containing 99.2 6.9E-10 1.5E-14 118.7 20.4 193 415-616 2-221 (541)
274 TIGR03300 assembly_YfgL outer 99.2 1.2E-08 2.7E-13 114.8 31.0 295 467-915 67-376 (377)
275 KOG4547 WD40 repeat-containing 99.2 2.5E-09 5.5E-14 114.5 22.5 191 355-572 4-220 (541)
276 TIGR03300 assembly_YfgL outer 99.2 2.6E-08 5.7E-13 112.1 32.2 212 818-1062 148-376 (377)
277 KOG1064 RAVE (regulator of V-A 99.1 4.1E-10 8.8E-15 133.8 12.9 223 342-608 2206-2439(2439)
278 KOG4190 Uncharacterized conser 99.1 6.1E-10 1.3E-14 116.5 11.8 241 401-658 730-987 (1034)
279 PLN02919 haloacid dehalogenase 99.1 8.1E-08 1.8E-12 119.4 31.5 257 808-1068 571-891 (1057)
280 PRK04043 tolB translocation pr 99.0 1.3E-07 2.8E-12 105.8 26.2 215 327-574 171-402 (419)
281 KOG0280 Uncharacterized conser 99.0 3.3E-08 7.1E-13 96.4 18.2 192 344-551 69-266 (339)
282 KOG1064 RAVE (regulator of V-A 99.0 2.3E-09 5.1E-14 127.6 12.1 201 402-625 2204-2408(2439)
283 KOG0280 Uncharacterized conser 99.0 6.6E-08 1.4E-12 94.4 19.7 271 366-661 45-335 (339)
284 PLN02919 haloacid dehalogenase 99.0 3.7E-07 8E-12 113.7 31.9 257 348-619 571-892 (1057)
285 PF15492 Nbas_N: Neuroblastoma 98.9 8.5E-07 1.8E-11 87.4 24.5 238 809-1074 2-270 (282)
286 KOG4190 Uncharacterized conser 98.9 4.2E-09 9.1E-14 110.4 9.1 222 838-1080 728-963 (1034)
287 PRK11138 outer membrane biogen 98.9 1.8E-06 3.9E-11 97.6 31.0 220 815-1064 160-393 (394)
288 PRK04043 tolB translocation pr 98.9 1E-06 2.2E-11 98.6 28.1 197 408-617 189-402 (419)
289 KOG0309 Conserved WD40 repeat- 98.9 2.7E-08 5.9E-13 108.4 14.6 246 346-616 69-340 (1081)
290 PF13360 PQQ_2: PQQ-like domai 98.9 1.5E-06 3.3E-11 91.0 27.0 226 824-1072 2-237 (238)
291 PF15492 Nbas_N: Neuroblastoma 98.9 1.3E-06 2.9E-11 86.1 23.9 189 803-1019 42-268 (282)
292 KOG3617 WD40 and TPR repeat-co 98.8 5.8E-07 1.3E-11 99.7 23.2 336 408-823 17-374 (1416)
293 KOG3914 WD repeat protein WDR4 98.8 3E-08 6.5E-13 101.4 12.4 164 346-535 64-232 (390)
294 PF07433 DUF1513: Protein of u 98.8 5.5E-06 1.2E-10 84.8 28.2 211 806-1019 6-256 (305)
295 PRK11138 outer membrane biogen 98.8 4.1E-06 9E-11 94.6 30.0 150 467-624 71-232 (394)
296 PF07433 DUF1513: Protein of u 98.8 2.8E-06 6E-11 86.9 24.9 183 809-1000 55-276 (305)
297 KOG0882 Cyclophilin-related pe 98.8 1.9E-07 4.2E-12 96.3 16.0 257 341-624 6-314 (558)
298 KOG3914 WD repeat protein WDR4 98.8 7.6E-08 1.6E-12 98.5 12.7 158 891-1068 65-226 (390)
299 PF06433 Me-amine-dh_H: Methyl 98.8 1.6E-05 3.5E-10 82.4 29.4 203 810-1020 100-330 (342)
300 PF08450 SGL: SMP-30/Gluconola 98.8 1.6E-05 3.5E-10 83.3 30.6 220 808-1053 3-244 (246)
301 KOG0309 Conserved WD40 repeat- 98.7 1.5E-07 3.2E-12 102.9 13.0 290 342-661 22-341 (1081)
302 KOG3617 WD40 and TPR repeat-co 98.7 6E-07 1.3E-11 99.6 17.5 107 348-481 19-129 (1416)
303 COG5170 CDC55 Serine/threonine 98.7 5.6E-07 1.2E-11 88.3 15.0 247 405-659 25-367 (460)
304 PF08450 SGL: SMP-30/Gluconola 98.6 5E-05 1.1E-09 79.6 30.1 221 348-604 3-244 (246)
305 KOG4532 WD40-like repeat conta 98.6 6.6E-06 1.4E-10 79.5 20.6 193 819-1014 132-335 (344)
306 KOG1897 Damage-specific DNA bi 98.6 0.0035 7.6E-08 72.6 57.9 587 340-1011 302-943 (1096)
307 KOG4532 WD40-like repeat conta 98.6 1.5E-05 3.2E-10 77.2 21.6 201 817-1020 85-292 (344)
308 COG5170 CDC55 Serine/threonine 98.6 1.6E-06 3.5E-11 85.2 15.5 117 803-920 171-311 (460)
309 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00028 6.1E-09 68.4 30.0 137 509-654 24-160 (354)
310 KOG4714 Nucleoporin [Nuclear s 98.6 3.7E-06 8E-11 80.9 16.8 95 825-919 159-255 (319)
311 KOG1645 RING-finger-containing 98.6 9E-06 1.9E-10 83.4 20.3 248 401-659 188-461 (463)
312 KOG1920 IkappaB kinase complex 98.6 0.00037 8E-09 82.2 35.7 242 406-661 68-324 (1265)
313 PF13360 PQQ_2: PQQ-like domai 98.5 2E-05 4.4E-10 82.5 23.9 219 427-663 2-234 (238)
314 PF06433 Me-amine-dh_H: Methyl 98.5 3.7E-05 8E-10 79.7 24.7 288 518-886 17-330 (342)
315 KOG4714 Nucleoporin [Nuclear s 98.5 1.9E-06 4.2E-11 82.8 14.2 207 346-573 38-255 (319)
316 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00032 7E-09 67.9 28.8 116 352-493 18-134 (354)
317 KOG1275 PAB-dependent poly(A) 98.5 1.8E-06 4E-11 97.2 15.8 179 815-1008 146-340 (1118)
318 KOG0396 Uncharacterized conser 98.5 1.4E-06 3E-11 88.4 13.5 120 5-125 115-242 (389)
319 PRK02888 nitrous-oxide reducta 98.5 2.1E-05 4.6E-10 88.2 23.4 183 810-1011 198-405 (635)
320 KOG1920 IkappaB kinase complex 98.5 0.0001 2.2E-09 86.7 29.5 238 737-1014 68-326 (1265)
321 PF00930 DPPIV_N: Dipeptidyl p 98.5 3.8E-05 8.2E-10 85.0 25.5 265 353-649 1-347 (353)
322 KOG2695 WD40 repeat protein [G 98.5 4.5E-07 9.8E-12 90.5 8.7 167 348-538 215-388 (425)
323 PF00400 WD40: WD domain, G-be 98.4 5.9E-07 1.3E-11 62.5 6.3 39 878-916 1-39 (39)
324 KOG1832 HIV-1 Vpr-binding prot 98.4 2.1E-07 4.5E-12 103.7 5.2 200 835-1068 1091-1294(1516)
325 PRK02888 nitrous-oxide reducta 98.4 4.9E-05 1.1E-09 85.3 23.4 137 813-954 285-449 (635)
326 PF10607 CLTH: CTLH/CRA C-term 98.4 1E-06 2.2E-11 83.3 9.0 134 38-182 5-141 (145)
327 KOG2066 Vacuolar assembly/sort 98.4 6.6E-06 1.4E-10 92.0 15.8 191 845-1066 39-234 (846)
328 PF14583 Pectate_lyase22: Olig 98.4 0.00026 5.6E-09 75.1 26.5 177 825-1010 168-381 (386)
329 KOG0882 Cyclophilin-related pe 98.4 3.1E-06 6.7E-11 87.7 11.7 213 843-1068 7-234 (558)
330 KOG3621 WD40 repeat-containing 98.4 8.7E-05 1.9E-09 82.2 23.1 286 343-665 32-359 (726)
331 KOG1645 RING-finger-containing 98.4 2.2E-05 4.7E-10 80.6 17.2 244 803-1066 192-462 (463)
332 KOG2695 WD40 repeat protein [G 98.3 1.7E-06 3.6E-11 86.6 8.8 166 455-628 215-389 (425)
333 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00035 7.6E-09 77.4 27.3 299 594-954 1-345 (353)
334 cd00216 PQQ_DH Dehydrogenases 98.3 0.00087 1.9E-08 77.6 30.9 183 824-1019 174-433 (488)
335 KOG1897 Damage-specific DNA bi 98.3 0.02 4.4E-07 66.7 58.7 620 348-1065 261-942 (1096)
336 KOG2114 Vacuolar assembly/sort 98.2 9.8E-05 2.1E-09 83.5 20.0 204 852-1072 30-250 (933)
337 cd00216 PQQ_DH Dehydrogenases 98.2 0.0014 3.1E-08 75.8 30.6 190 468-662 64-322 (488)
338 KOG2114 Vacuolar assembly/sort 98.2 0.00019 4.1E-09 81.3 21.7 202 811-1019 30-252 (933)
339 PF00400 WD40: WD domain, G-be 98.2 5.9E-06 1.3E-10 57.4 6.5 39 835-874 1-39 (39)
340 PF11768 DUF3312: Protein of u 98.1 0.0016 3.4E-08 71.7 25.8 93 959-1066 238-330 (545)
341 KOG3621 WD40 repeat-containing 98.1 0.00041 8.9E-09 77.1 21.4 282 736-1068 32-356 (726)
342 PF14583 Pectate_lyase22: Olig 98.1 0.007 1.5E-07 64.6 29.7 278 351-658 42-380 (386)
343 PF08513 LisH: LisH; InterPro 98.1 6.2E-06 1.3E-10 50.5 3.9 27 6-32 1-27 (27)
344 KOG2066 Vacuolar assembly/sort 98.1 0.00026 5.7E-09 79.7 19.1 178 749-965 49-233 (846)
345 PF02897 Peptidase_S9_N: Proly 98.0 0.0041 8.9E-08 71.1 29.6 250 346-620 125-409 (414)
346 PF04053 Coatomer_WDAD: Coatom 98.0 0.00094 2E-08 74.6 22.8 222 402-661 28-264 (443)
347 PF11768 DUF3312: Protein of u 98.0 8E-05 1.7E-09 81.5 13.6 84 333-438 248-331 (545)
348 smart00668 CTLH C-terminal to 98.0 5.5E-06 1.2E-10 63.6 3.1 52 38-90 5-56 (58)
349 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0051 1.1E-07 69.0 27.7 199 810-1020 34-256 (410)
350 KOG1275 PAB-dependent poly(A) 98.0 0.00016 3.4E-09 82.2 15.3 182 417-614 146-341 (1118)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.0032 7E-08 69.4 24.6 252 346-604 3-325 (395)
352 COG0823 TolB Periplasmic compo 97.9 0.00061 1.3E-08 75.8 19.1 188 343-558 191-389 (425)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.036 7.8E-07 64.4 33.9 111 509-625 70-199 (527)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.037 8E-07 64.4 33.6 148 869-1020 272-500 (527)
355 PF08596 Lgl_C: Lethal giant l 97.9 0.0026 5.7E-08 70.1 23.0 247 739-1020 3-300 (395)
356 PF04053 Coatomer_WDAD: Coatom 97.8 0.0017 3.7E-08 72.6 21.0 223 737-1011 32-263 (443)
357 smart00667 LisH Lissencephaly 97.8 2.8E-05 6E-10 51.9 4.3 32 4-35 2-33 (34)
358 PF06977 SdiA-regulated: SdiA- 97.8 0.0051 1.1E-07 62.7 22.3 216 840-1062 16-247 (248)
359 COG0823 TolB Periplasmic compo 97.8 0.0038 8.2E-08 69.7 23.2 194 447-650 188-390 (425)
360 KOG2817 Predicted E3 ubiquitin 97.8 0.00014 3.1E-09 75.4 11.0 115 5-120 116-242 (394)
361 KOG1008 Uncharacterized conser 97.8 1.1E-05 2.4E-10 87.7 2.1 204 344-572 56-275 (783)
362 KOG1008 Uncharacterized conser 97.7 2.4E-05 5.2E-10 85.1 3.9 254 803-1066 55-336 (783)
363 PF06977 SdiA-regulated: SdiA- 97.6 0.024 5.1E-07 57.9 23.8 201 803-1007 20-247 (248)
364 PF04841 Vps16_N: Vps16, N-ter 97.6 0.12 2.5E-06 58.2 31.1 137 811-974 185-323 (410)
365 COG3391 Uncharacterized conser 97.6 0.026 5.7E-07 63.0 25.5 207 807-1020 76-293 (381)
366 COG3391 Uncharacterized conser 97.6 0.061 1.3E-06 60.0 28.3 242 806-1068 32-286 (381)
367 COG3490 Uncharacterized protei 97.6 0.044 9.5E-07 54.7 23.0 210 807-1019 70-319 (366)
368 PRK13616 lipoprotein LpqB; Pro 97.5 0.017 3.8E-07 67.4 24.1 204 846-1079 350-582 (591)
369 PF00780 CNH: CNH domain; Int 97.5 0.053 1.1E-06 58.0 26.0 205 804-1020 35-265 (275)
370 COG3490 Uncharacterized protei 97.5 0.029 6.2E-07 55.9 20.9 261 590-875 72-347 (366)
371 PF03178 CPSF_A: CPSF A subuni 97.5 0.012 2.6E-07 64.3 21.1 175 825-1010 2-202 (321)
372 PRK13616 lipoprotein LpqB; Pro 97.4 0.0068 1.5E-07 70.7 19.4 187 805-1004 350-562 (591)
373 PF02897 Peptidase_S9_N: Proly 97.4 0.14 3.1E-06 58.4 30.1 241 807-1068 126-407 (414)
374 COG3386 Gluconolactonase [Carb 97.4 0.06 1.3E-06 57.2 24.2 199 810-1020 30-252 (307)
375 COG3386 Gluconolactonase [Carb 97.4 0.048 1E-06 57.9 23.1 221 351-604 31-274 (307)
376 PF08553 VID27: VID27 cytoplas 97.3 0.014 3E-07 69.0 19.2 149 857-1010 492-647 (794)
377 PF03178 CPSF_A: CPSF A subuni 97.2 0.021 4.5E-07 62.5 19.3 178 816-1007 42-262 (321)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.25 5.3E-06 54.6 26.5 84 539-626 308-409 (415)
379 PF00780 CNH: CNH domain; Int 97.2 0.12 2.5E-06 55.3 24.3 225 814-1068 5-258 (275)
380 KOG4640 Anaphase-promoting com 97.1 0.0023 5.1E-08 70.4 9.6 94 845-945 20-114 (665)
381 PF05096 Glu_cyclase_2: Glutam 97.1 0.11 2.4E-06 52.7 20.4 198 805-1053 45-249 (264)
382 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.76 1.6E-05 51.0 30.9 288 748-1074 36-369 (418)
383 KOG4640 Anaphase-promoting com 97.0 0.0024 5.3E-08 70.3 8.8 93 345-460 21-114 (665)
384 PF14870 PSII_BNR: Photosynthe 97.0 0.64 1.4E-05 49.2 28.7 151 803-962 143-301 (302)
385 PF14870 PSII_BNR: Photosynthe 96.9 0.72 1.6E-05 48.8 28.9 158 843-1007 142-301 (302)
386 PRK10115 protease 2; Provision 96.9 1.4 3E-05 53.5 31.8 241 346-618 128-397 (686)
387 smart00320 WD40 WD40 repeats. 96.9 0.0025 5.5E-08 43.4 5.4 39 878-916 2-40 (40)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.34 7.3E-06 53.5 24.0 88 809-897 6-117 (415)
389 PF08553 VID27: VID27 cytoplas 96.9 0.068 1.5E-06 63.4 19.7 141 418-571 493-646 (794)
390 TIGR03074 PQQ_membr_DH membran 96.8 2.1 4.7E-05 51.8 36.1 203 418-624 194-486 (764)
391 PHA02713 hypothetical protein; 96.8 0.059 1.3E-06 63.4 18.5 198 857-1078 303-544 (557)
392 PF07995 GSDH: Glucose / Sorbo 96.7 1 2.3E-05 49.1 26.1 58 597-654 271-330 (331)
393 KOG4441 Proteins containing BT 96.6 0.22 4.8E-06 58.4 21.6 237 813-1077 282-556 (571)
394 PRK10115 protease 2; Provision 96.6 2.1 4.5E-05 51.9 30.4 198 407-614 127-343 (686)
395 PF10647 Gmad1: Lipoprotein Lp 96.6 0.81 1.8E-05 47.7 23.4 152 847-1003 25-188 (253)
396 PF07995 GSDH: Glucose / Sorbo 96.6 1.2 2.7E-05 48.6 25.8 236 807-1060 4-330 (331)
397 PF14783 BBS2_Mid: Ciliary BBS 96.6 0.068 1.5E-06 45.9 12.3 102 347-478 2-109 (111)
398 KOG2395 Protein involved in va 96.5 0.044 9.6E-07 59.4 13.5 145 860-1010 348-500 (644)
399 PF10647 Gmad1: Lipoprotein Lp 96.4 0.48 1E-05 49.4 20.8 146 805-955 24-184 (253)
400 PRK13684 Ycf48-like protein; P 96.4 1.9 4.1E-05 47.2 29.7 158 845-1009 172-330 (334)
401 PF05694 SBP56: 56kDa selenium 96.4 0.48 1E-05 51.4 20.5 237 748-999 86-392 (461)
402 smart00320 WD40 WD40 repeats. 96.4 0.0092 2E-07 40.5 5.4 39 835-874 2-40 (40)
403 KOG4441 Proteins containing BT 96.2 0.4 8.7E-06 56.3 20.7 234 416-661 283-548 (571)
404 KOG2395 Protein involved in va 96.2 0.055 1.2E-06 58.7 12.1 143 417-571 344-499 (644)
405 KOG4499 Ca2+-binding protein R 96.1 1.5 3.2E-05 42.9 20.1 54 810-863 217-271 (310)
406 COG3204 Uncharacterized protei 96.1 1.9 4E-05 44.1 21.4 121 535-659 82-210 (316)
407 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.44 9.6E-06 41.0 14.7 84 454-546 2-88 (111)
408 PF15390 DUF4613: Domain of un 96.0 3.6 7.8E-05 46.3 25.8 127 341-485 53-188 (671)
409 KOG2079 Vacuolar assembly/sort 96.0 0.075 1.6E-06 62.8 13.0 103 417-525 98-202 (1206)
410 COG3204 Uncharacterized protei 96.0 2.3 4.9E-05 43.5 21.8 170 842-1012 82-265 (316)
411 TIGR03074 PQQ_membr_DH membran 95.9 1.1 2.4E-05 54.3 22.4 239 815-1073 194-485 (764)
412 PF05694 SBP56: 56kDa selenium 95.8 1.6 3.5E-05 47.5 20.6 206 355-574 86-344 (461)
413 COG3823 Glutamine cyclotransfe 95.7 0.68 1.5E-05 44.3 15.5 190 815-1053 55-247 (262)
414 KOG4499 Ca2+-binding protein R 95.7 1.6 3.5E-05 42.7 18.2 136 451-596 108-264 (310)
415 PF12894 Apc4_WD40: Anaphase-p 95.7 0.037 8E-07 39.4 5.7 31 406-436 11-41 (47)
416 KOG2444 WD40 repeat protein [G 95.7 0.025 5.4E-07 54.8 6.3 109 902-1020 32-142 (238)
417 KOG2444 WD40 repeat protein [G 95.7 0.03 6.4E-07 54.3 6.8 103 817-919 71-178 (238)
418 PHA02713 hypothetical protein; 95.6 0.36 7.8E-06 56.9 17.2 186 815-1015 303-538 (557)
419 KOG2079 Vacuolar assembly/sort 95.6 0.04 8.7E-07 65.0 8.6 98 359-481 101-201 (1206)
420 PF12894 Apc4_WD40: Anaphase-p 95.6 0.032 7E-07 39.7 5.0 34 344-379 11-44 (47)
421 PF14727 PHTB1_N: PTHB1 N-term 95.3 6.1 0.00013 44.0 31.1 278 353-661 33-362 (418)
422 PF05096 Glu_cyclase_2: Glutam 95.3 4 8.7E-05 41.7 21.3 200 736-963 43-257 (264)
423 COG4257 Vgb Streptogramin lyas 95.1 4.3 9.4E-05 40.9 22.0 242 804-1076 61-317 (353)
424 PF15390 DUF4613: Domain of un 94.9 0.77 1.7E-05 51.2 15.0 154 846-1012 20-188 (671)
425 PHA03098 kelch-like protein; P 94.8 1 2.2E-05 53.4 17.9 153 899-1075 342-519 (534)
426 KOG4659 Uncharacterized conser 94.8 15 0.00032 45.5 31.4 25 541-571 477-501 (1899)
427 PF10168 Nup88: Nuclear pore c 94.7 6.1 0.00013 47.6 23.3 99 405-529 83-182 (717)
428 PF02333 Phytase: Phytase; In 94.7 5.4 0.00012 43.5 20.6 188 467-661 70-292 (381)
429 COG3292 Predicted periplasmic 94.6 9.6 0.00021 42.8 22.8 312 342-693 162-479 (671)
430 KOG1916 Nuclear protein, conta 94.6 0.029 6.2E-07 64.5 3.8 180 825-1011 153-375 (1283)
431 COG4590 ABC-type uncharacteriz 94.6 0.59 1.3E-05 50.0 12.9 159 803-969 219-390 (733)
432 KOG2377 Uncharacterized conser 94.6 4.1 8.9E-05 44.0 18.9 119 343-481 65-183 (657)
433 KOG2280 Vacuolar assembly/sort 94.5 4.7 0.0001 46.7 20.4 219 345-596 44-270 (829)
434 KOG3616 Selective LIM binding 94.5 1.6 3.4E-05 49.7 16.4 80 884-973 333-413 (1636)
435 COG4257 Vgb Streptogramin lyas 94.4 6.5 0.00014 39.7 18.7 209 847-1074 63-272 (353)
436 PHA03098 kelch-like protein; P 94.4 0.93 2E-05 53.8 16.1 189 814-1014 293-515 (534)
437 cd08044 TAF5_NTD2 TAF5_NTD2 is 94.2 0.12 2.5E-06 47.5 6.3 78 72-149 29-113 (133)
438 KOG1898 Splicing factor 3b, su 94.0 19 0.00041 43.7 35.9 106 810-919 939-1049(1205)
439 PF10168 Nup88: Nuclear pore c 94.0 19 0.0004 43.6 25.6 94 803-919 83-180 (717)
440 PF12234 Rav1p_C: RAVE protein 94.0 2 4.2E-05 50.1 16.6 122 841-965 25-156 (631)
441 PF04494 TFIID_90kDa: WD40 ass 93.8 0.12 2.6E-06 48.0 5.5 78 72-149 40-124 (142)
442 PHA02790 Kelch-like protein; P 93.7 2.1 4.6E-05 49.6 16.9 183 815-1013 271-473 (480)
443 PRK13684 Ycf48-like protein; P 93.6 14 0.00029 40.5 30.5 278 344-657 45-329 (334)
444 KOG2280 Vacuolar assembly/sort 93.5 8.1 0.00018 44.9 19.8 181 826-1019 65-255 (829)
445 PF14761 HPS3_N: Hermansky-Pud 93.4 3.6 7.7E-05 40.4 14.8 162 891-1064 20-213 (215)
446 COG1520 FOG: WD40-like repeat 93.2 9.1 0.0002 42.8 20.6 203 812-1020 65-278 (370)
447 PF12234 Rav1p_C: RAVE protein 93.2 2 4.4E-05 50.0 15.1 110 454-571 32-155 (631)
448 TIGR02604 Piru_Ver_Nterm putat 93.1 1.8 3.9E-05 48.2 14.6 102 345-464 14-136 (367)
449 TIGR03118 PEPCTERM_chp_1 conse 93.1 12 0.00027 38.7 21.3 208 848-1068 25-282 (336)
450 PF11725 AvrE: Pathogenicity f 93.0 16 0.00035 46.8 22.8 148 343-527 361-517 (1774)
451 COG4590 ABC-type uncharacteriz 92.9 0.41 9E-06 51.0 8.2 171 836-1014 211-390 (733)
452 PHA02790 Kelch-like protein; P 92.5 4.2 9.2E-05 47.1 17.0 187 857-1068 271-473 (480)
453 KOG1916 Nuclear protein, conta 92.5 0.26 5.7E-06 57.1 6.6 163 343-531 131-328 (1283)
454 PF10433 MMS1_N: Mono-function 92.5 27 0.00058 41.0 34.8 391 350-855 49-503 (504)
455 PF08728 CRT10: CRT10; InterP 92.3 7.6 0.00016 45.9 18.1 116 407-525 101-245 (717)
456 KOG2247 WD40 repeat-containing 92.1 0.044 9.6E-07 58.9 0.1 240 742-1016 39-286 (615)
457 TIGR02604 Piru_Ver_Nterm putat 92.1 5.8 0.00012 44.2 16.8 147 846-999 14-202 (367)
458 KOG3630 Nuclear pore complex, 91.9 1.3 2.8E-05 53.3 11.4 148 803-954 99-261 (1405)
459 PF10313 DUF2415: Uncharacteri 91.6 0.51 1.1E-05 32.6 4.6 33 345-377 1-35 (43)
460 KOG4460 Nuclear pore complex, 91.5 3.6 7.9E-05 45.2 13.2 94 980-1076 103-209 (741)
461 PF11725 AvrE: Pathogenicity f 91.3 57 0.0012 42.3 25.7 131 823-964 621-771 (1774)
462 COG1520 FOG: WD40-like repeat 91.2 12 0.00026 41.8 18.4 206 860-1076 70-279 (370)
463 PF13449 Phytase-like: Esteras 90.9 12 0.00025 40.9 17.2 164 845-1010 19-249 (326)
464 KOG3630 Nuclear pore complex, 90.5 3.7 8E-05 49.7 13.2 101 804-906 155-261 (1405)
465 PF14761 HPS3_N: Hermansky-Pud 90.5 11 0.00024 37.1 14.4 148 859-1010 29-214 (215)
466 PF07676 PD40: WD40-like Beta 90.4 1 2.2E-05 30.7 5.6 32 341-372 5-38 (39)
467 COG3292 Predicted periplasmic 90.3 37 0.0008 38.5 23.2 72 405-484 163-234 (671)
468 PLN00033 photosystem II stabil 90.2 36 0.00077 38.1 31.4 151 849-1007 242-396 (398)
469 PF10313 DUF2415: Uncharacteri 90.1 0.96 2.1E-05 31.2 4.9 31 407-437 1-34 (43)
470 PF03022 MRJP: Major royal jel 90.0 29 0.00063 36.9 20.2 191 807-999 3-254 (287)
471 KOG3616 Selective LIM binding 90.0 8.3 0.00018 44.2 14.7 79 405-491 13-91 (1636)
472 KOG1900 Nuclear pore complex, 89.8 3.2 6.9E-05 51.3 12.3 167 333-527 67-273 (1311)
473 PF12657 TFIIIC_delta: Transcr 89.6 2 4.3E-05 41.7 9.0 31 407-437 86-122 (173)
474 PF13449 Phytase-like: Esteras 88.7 28 0.0006 38.0 18.1 111 888-999 19-165 (326)
475 PF05935 Arylsulfotrans: Aryls 88.7 16 0.00034 42.3 16.9 44 1033-1076 269-312 (477)
476 PF14781 BBS2_N: Ciliary BBSom 88.4 15 0.00033 33.0 12.5 119 848-975 1-135 (136)
477 PLN02153 epithiospecifier prot 88.3 32 0.0007 37.8 18.7 23 899-921 85-112 (341)
478 TIGR03118 PEPCTERM_chp_1 conse 88.2 36 0.00078 35.5 25.5 74 824-898 221-307 (336)
479 COG3823 Glutamine cyclotransfe 88.1 18 0.0004 35.1 13.5 107 507-620 55-163 (262)
480 smart00036 CNH Domain found in 87.9 43 0.00092 36.0 27.1 210 803-1019 41-279 (302)
481 KOG1900 Nuclear pore complex, 87.4 21 0.00045 44.6 16.8 147 865-1011 96-273 (1311)
482 KOG1983 Tomosyn and related SN 87.0 15 0.00033 46.3 16.3 197 803-1014 34-268 (993)
483 PF08728 CRT10: CRT10; InterP 86.9 4 8.7E-05 48.1 10.4 135 347-481 103-244 (717)
484 KOG1898 Splicing factor 3b, su 86.8 88 0.0019 38.5 39.6 173 826-1010 854-1048(1205)
485 COG1770 PtrB Protease II [Amin 86.6 72 0.0016 37.3 25.2 253 806-1079 130-410 (682)
486 COG5167 VID27 Protein involved 86.4 21 0.00045 39.5 14.5 149 457-615 472-632 (776)
487 PF07569 Hira: TUP1-like enhan 86.3 2.4 5.3E-05 42.8 7.5 74 896-969 18-99 (219)
488 TIGR03606 non_repeat_PQQ dehyd 86.1 67 0.0015 36.5 28.8 63 343-418 28-90 (454)
489 PF10214 Rrn6: RNA polymerase 85.9 1E+02 0.0022 38.3 27.8 159 803-966 78-277 (765)
490 COG5290 IkappaB kinase complex 85.7 73 0.0016 37.6 18.8 59 804-862 295-353 (1243)
491 COG5290 IkappaB kinase complex 85.5 50 0.0011 38.9 17.4 133 851-992 207-348 (1243)
492 PF02333 Phytase: Phytase; In 84.6 68 0.0015 35.2 24.6 197 816-1019 68-300 (381)
493 KOG1983 Tomosyn and related SN 84.5 20 0.00043 45.3 15.6 72 537-619 197-268 (993)
494 PLN02193 nitrile-specifier pro 84.5 86 0.0019 36.3 20.3 221 857-1090 175-436 (470)
495 KOG2377 Uncharacterized conser 84.4 70 0.0015 35.2 21.6 152 808-967 26-187 (657)
496 PLN02153 epithiospecifier prot 84.4 70 0.0015 35.2 23.0 193 815-1015 32-289 (341)
497 COG5167 VID27 Protein involved 84.0 17 0.00036 40.2 12.5 151 851-1011 472-633 (776)
498 PF07569 Hira: TUP1-like enhan 84.0 4.5 9.7E-05 40.9 8.1 69 414-485 18-97 (219)
499 PF08801 Nucleoporin_N: Nup133 83.5 26 0.00056 40.0 15.2 31 981-1011 190-220 (422)
500 TIGR03548 mutarot_permut cycli 82.7 78 0.0017 34.5 22.5 71 507-577 123-199 (323)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-72 Score=555.47 Aligned_cols=490 Identities=22% Similarity=0.314 Sum_probs=417.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC---HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1101)
+-|++|++.|+|+.+||.+|+.+||.|+|+.+. ...|.++++.|+|++++..+..+....+.. ...+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~-~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERN-RKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhh-hHHHHHHHHHHHH
Confidence 459999999999999999999999999999885 999999999999999999999885444333 4459999999999
Q ss_pred HHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCc-cccccccccCCchHHHHHHHHHHHhhcccCcccccc
Q 001319 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNF-RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDK 160 (1101)
Q Consensus 82 lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1101)
||++..|.+.+|+.+||++..++ .++.+++++|+.-+..++. ..++.- .-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~-~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEEN-TTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccc-hhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999998 7899999999887765433 333332 1222456899999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001319 161 LAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240 (1101)
Q Consensus 161 ~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 240 (1101)
+|++||++||+||++||++.|+||| ..+..|||.||.|.+.+ +|. ++.+++.+|++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~~q--------------ip~-qt~qil~~htd--- 225 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGRLQ--------------IPS-QTWQILQDHTD--- 225 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCccc--------------CCc-hhhhhHhhCCC---
Confidence 9999999999999999999999999 47779999999999966 777 55665555555
Q ss_pred CccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCccccCCCChHHHhhhcCCCCCCcceee
Q 001319 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTY 320 (1101)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1101)
T Consensus 226 -------------------------------------------------------------------------------- 225 (519)
T KOG0293|consen 226 -------------------------------------------------------------------------------- 225 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 321 SSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+||-+.||++|+| ||++++|.+..||++.....+. ..+
T Consensus 226 -------------------------EVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l~~ 263 (519)
T KOG0293|consen 226 -------------------------EVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------LKK 263 (519)
T ss_pred -------------------------cEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------eee
Confidence 6666667888996 5999999999999987644322 124
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
++.+|..+|..+.||||.+||++|+.|..+++||+.+|+...... .+|...+.+++|.|||. .+++|+.|+++..|
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMW 339 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEe
Confidence 689999999999999999999999999999999999999876432 24678999999999999 69999999999999
Q ss_pred EcCCceeEEeecCCc-CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 ELSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d~~~~~~~~~~~h~~-~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
|.+|+.+..+++-.. .|.++++++ ||+++++.+.|..|++++.++..... +.....+|+++++|.||+++++.-.
T Consensus 340 dlDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 340 DLDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred cCCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc-
Confidence 999999888887653 589999876 77999999999999999987766554 3345668999999999999998875
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcc-eEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
+..+++||++..+.++.+.||.... +-.-||.. +..++++|++|++|+||+..+++++..+.+|.. .|++++|
T Consensus 416 ---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVsw 490 (519)
T KOG0293|consen 416 ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSW 490 (519)
T ss_pred ---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEec
Confidence 8889999999999999999998743 22245554 457899999999999999999999999998765 8999999
Q ss_pred ec-CCCEEEEEEcCCcEEEEEccc
Q 001319 638 SK-EGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 638 s~-~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
+| +..++|++++||+|+||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 667999999999999997653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-58 Score=439.61 Aligned_cols=487 Identities=21% Similarity=0.333 Sum_probs=400.3
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1101)
..+|+|||.|||+|..++++.++|++|++++++ ++.|.+.|.+|+||.++..+++| .+|+ +-+..+|+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~-----kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPD-----KKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCch-----hHHHHHHHHH
Confidence 458999999999999999999999999999997 89999999999999999999999 4443 3678899999
Q ss_pred HHHHHccCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccccccccccCCchHHHHHHHHHHHhhcccCcccc
Q 001319 81 YLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFR 158 (1101)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1101)
.|||+|.++...|..+||+- +.-++..+|++|-+|..+|..+.|+..+.... ...++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999973 55567889999999999999999988777432 22445567777777766555
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001319 159 DKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPF 238 (1101)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 238 (1101)
+||+||..||.||++||..+- .+|++.+++ .|
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQG-----------------------------------LLPPGt~iD------LF 186 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQG-----------------------------------LLPPGTTID------LF 186 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcC-----------------------------------CCCCCceee------ec
Confidence 999999999999999998843 344444443 45
Q ss_pred CCCccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCccccCCCChHHHhhhcCCCCCCcce
Q 001319 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEV 318 (1101)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 318 (1101)
++..+ .+ ... +
T Consensus 187 RGkAA-~K----------------------------------------------------~~~-E--------------- 197 (508)
T KOG0275|consen 187 RGKAA-MK----------------------------------------------------DQE-E--------------- 197 (508)
T ss_pred cchhh-hh----------------------------------------------------hhH-h---------------
Confidence 55521 00 000 0
Q ss_pred eecCCCccccccCCCCccee--EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcc
Q 001319 319 TYSSSRHQTWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396 (1101)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~ 396 (1101)
+..|..+. ..++.++.+.|..|||||+| |++|+.||.|.+||+.+|+.....+++.-
T Consensus 198 ------------e~~Pt~l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAq-------- 256 (508)
T KOG0275|consen 198 ------------ERYPTQLARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-------- 256 (508)
T ss_pred ------------hhchHHhhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhh--------
Confidence 01111222 22456778999999999996 58999999999999999998765444321
Q ss_pred ccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 397 ~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
..+-.+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+. +.|+..|+|+.|+.|+. -+++++.|.+
T Consensus 257 ---d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~t 329 (508)
T KOG0275|consen 257 ---DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQT 329 (508)
T ss_pred ---cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccce
Confidence 2366689999999999999999999999999999999999999543 38999999999999999 6999999999
Q ss_pred EEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--CceEEEEEccC-CCE
Q 001319 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSAD-GSR 552 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~d-~~~ 552 (1101)
+++.- .+|+++..++||+..|+...|.+ ||..+++++.||+|++|+..+.++..++...+ -+|.++..-|. ...
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence 99999 99999999999999999999966 77899999999999999999999887766544 36777777664 456
Q ss_pred EEEeecCCCCCceEEEEeCCCCeeEEEecccC--CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+++|.. .++|++-++. |+.++.|.... ++..-+.+.+|.|.++++.++|+.++.|...+|++..++..+..
T Consensus 408 ~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-- 480 (508)
T KOG0275|consen 408 FIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-- 480 (508)
T ss_pred EEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--
Confidence 777754 7788888864 77777776432 23455678999999999999999999999999999999988865
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
.|..++-+|..+.+++-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-56 Score=474.57 Aligned_cols=573 Identities=15% Similarity=0.235 Sum_probs=477.3
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCcee-ccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCC
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~ 428 (1101)
++||++|+. |++... ..|.+-|+.+++.. .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 566544 36889999998763 21 1334577899999999999999999999
Q ss_pred eEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC
Q 001319 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1101)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~ 506 (1101)
.+++|++.+|+.++ .++. |++||.-++|+|.+. ++++|+.|+.++||| ..+.+...|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998888 5666 999999999999997 899999999999999 8899999999999999999999988
Q ss_pred CccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1101)
+...|++|..|+++++||+.+... ......|...|++++|++|+..++++++ |..+.+||+.+-+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999986554 6778889999999999999999999986 8899999998877777776554
Q ss_pred cceEEEEEeCC-----CCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 586 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
.+..+.+-++ +.+++++|.+|.+++||.++++.+....... ...+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccc
Confidence 3666777666 6799999999999999999998877665443 22366666666666777778889999998776
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccE
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKV 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 740 (1101)
. ...+.+.+ ....|
T Consensus 313 l-~i~k~ivG-----------------------------------------------------------------~ndEI 326 (775)
T KOG0319|consen 313 L-TIVKQIVG-----------------------------------------------------------------YNDEI 326 (775)
T ss_pred c-EEehhhcC-----------------------------------------------------------------Cchhh
Confidence 6 34433333 34455
Q ss_pred EEEEee-cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeE
Q 001319 741 VRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 819 (1101)
Q Consensus 741 ~~~~~s-~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 819 (1101)
..+.|- |+.+.+++++..+.+++|+..+... . .+. +|.+.|.++....+|-+|
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------------------~----ii~--GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------------------Q----IIP--GHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCce--------------------E----EEe--CchhheeeeeecccCcEE
Confidence 555553 5667788888889999997653211 0 122 499999999988888999
Q ss_pred EEEc-CCeEEEEECCCce----EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-----E----Eeec
Q 001319 820 MSAT-GGKISLFNMMTFK----VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-----K----SKLK 885 (1101)
Q Consensus 820 a~~~-dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-----~----~~~~ 885 (1101)
++++ |.++++|.++++. ++....+|.+.|.+++++.....++++++.|+++++|++...+. + ....
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 9999 9999999884433 45567789999999999986778999999999999999986321 1 1235
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEc
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDA 964 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~ 964 (1101)
.|...|++++++|+.+++||||.|++.++|++.... ....+.||. .++.++.|+|....++++ .|++|+||.+
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLsGH~-RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLSGHT-RGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCce-----EEEEeeCCc-cceEEEEeccccceeEeccCCceEEEEEe
Confidence 799999999999999999999999999999999543 455667777 899999999999999995 5999999999
Q ss_pred CCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEec
Q 001319 965 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1044 (1101)
Q Consensus 965 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p 1044 (1101)
+++.++.++.+| ...|..+.|-.+|+.|++++.||-|++|+++++++.+.+.. |.+.+ .+++-+|
T Consensus 535 s~fSClkT~eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----------H~Drv--WaL~~~~ 599 (775)
T KOG0319|consen 535 STFSCLKTFEGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----------HNDRV--WALSVSP 599 (775)
T ss_pred ccceeeeeecCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----------cccee--EEEeecC
Confidence 999999999887 89999999999999999999999999999999999998874 66655 5777778
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1045 LEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1045 ~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
...+++||+.||.|.+|.=.|.+
T Consensus 600 -~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 600 -LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred -ccceeEecCCCeEEEEeecCcHH
Confidence 57799999999999999866544
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-54 Score=457.82 Aligned_cols=540 Identities=16% Similarity=0.232 Sum_probs=450.0
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc-CCccEEEEEEccCCCEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l 421 (1101)
..+.+++++.+||+.+ |++++..+.+++|++.+++.+.. ++. |+++|.-++|+|.|..|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 4578999999999985 57888999999999999987653 555 99999999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-eeEEeecCCcCeEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEAPVYS 499 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-~~~~~~~h~~~v~~ 499 (1101)
|+|+.|+.|+|||+..+.+.. .++||.+.|.++.|.|+-.+.+|++|..|+++++|| .+.. ++..+..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998877 789999999999999998766899999999999999 5343 58889999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC-----CCEEEEeecCCCCCceEEEEeCCCC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
+++.+ |+..+++++.|..+.+||+...+....+.. ...+.++.+-++ |.++++.|. ++.+++||.+++
T Consensus 198 L~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~ 270 (775)
T KOG0319|consen 198 LAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESG 270 (775)
T ss_pred eeecc--CCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCCcceEEEEecC----CceEEEEecccc
Confidence 99977 567899999999999999966555444332 224666777666 678998885 999999999999
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE-ecCCCEEEEEEcCCcE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGF 653 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~g~~l~~~~~d~~i 653 (1101)
++...........+..+...+....++....|..+.++|.++.+....+-+... .|.++.| .|+.++|++++..+.+
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND--EILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch--hheeeeecCCccceEEEEeCCCce
Confidence 887766554333455555656667788888899999999999998888765543 6888876 5678999999999999
Q ss_pred EEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
++|+..+.. +. .+
T Consensus 349 r~y~~~~~~-c~-ii----------------------------------------------------------------- 361 (775)
T KOG0319|consen 349 RLYTLPTSY-CQ-II----------------------------------------------------------------- 361 (775)
T ss_pred EEEecCCCc-eE-EE-----------------------------------------------------------------
Confidence 999766541 10 11
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
.+|...|.++....+|..|++++.|.++++|.++.+.. ..... ....+|...|.+++++
T Consensus 362 ~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGS 420 (775)
T ss_pred eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeec
Confidence 45888899999888888999999999999998732211 00111 1112599999999998
Q ss_pred CCCC-eEEEEc-CCeEEEEECCCceE---------EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 814 KNDS-YVMSAT-GGKISLFNMMTFKV---------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 814 ~dg~-~la~~~-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
..+. ++++++ |.++++|++...+. ..+...|...|.+++++| +.+++|+|+.|.+.+||++.......
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 7654 778887 99999999976221 123346899999999999 89999999999999999999999999
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEE
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAI 961 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v 961 (1101)
++.||...|.++.|++..+.++|+|.|++|+||.++++++.+ .++||. ..|..+.|-.+|+.|++ +.||-+++
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk-----T~eGH~-~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK-----TFEGHT-SAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee-----eecCcc-ceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999999999999999999999999987544 456666 78999999999999998 56999999
Q ss_pred EEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 962 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 962 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
|++.+++++..+..| ...|++++-++++.+++||+.||.|.+|.=.+.
T Consensus 574 Wnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred Eeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999999876 899999999999999999999999999976553
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-50 Score=411.27 Aligned_cols=567 Identities=14% Similarity=0.220 Sum_probs=443.6
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
.-.|.|..++.+. .+.|.+-+++...... ++.+|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 3456677777764 4578888887765432 478899999999999999999999999999
Q ss_pred EEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec--CCc--eEEEEEcCCceeEEeecCCcCeEEEecccCC
Q 001319 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~--~d~--~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~ 506 (1101)
||||....+.+. ..+++.-.++|.+++|+.|+++ +++.+ .++ .+.+|| +|..+-.+.||...|+++.|-|..
T Consensus 84 RIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 84 RIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCC
Confidence 999998744332 2367788899999999999996 44433 333 455566 677788999999999999998865
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec---cc
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---GF 583 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~ 583 (1101)
. -++++++.|++|.+|+-...+-...+..|...|.++.|+|||.++++.+. |+.+.+||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 3 67999999999999986666666777788889999999999999999986 9999999999999999998 66
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-CCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|- ...|++.+.+|+|.+++.....
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 66 8999999999999999999999999999999999988765431 111234453 6689999999999999887662
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEE
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVR 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 742 (1101)
..+.+ .+|...|++
T Consensus 312 -~~~~i-----------------------------------------------------------------~GHnK~ITa 325 (603)
T KOG0318|consen 312 -VLKVI-----------------------------------------------------------------SGHNKSITA 325 (603)
T ss_pred -hhhee-----------------------------------------------------------------cccccceeE
Confidence 33333 458999999
Q ss_pred EEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE
Q 001319 743 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 822 (1101)
Q Consensus 743 ~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 822 (1101)
+..++++++|++++.||.|.-|+....... .+.+..|...|.+++.+..+.++.++
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~------------------------~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSD------------------------RLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCcccc------------------------ccccccccceEEEEeecCCCcEEEEe
Confidence 999999999999999999999986543211 12222489999999999888888888
Q ss_pred cCCeEEEEECCCceEEEE--eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC
Q 001319 823 TGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 900 (1101)
Q Consensus 823 ~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 900 (1101)
-|+++++.++........ ++. .....+++..+ ++.+++.++.++-+.+=|... +.... -.-...+++++|++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDG 455 (603)
T ss_pred cCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCc---ceeec-cccccceEEEcCCC
Confidence 899999998865433222 121 22334888888 776777777655444433332 22221 23457899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCC
Q 001319 901 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL 979 (1101)
Q Consensus 901 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h 979 (1101)
..++.|+.||.|++|.+..++....... ..+. +.++.+++|||+.+||+++ .+.+.+||..+.+.....- ..|
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~-a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w--~FH 529 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHR-AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW--AFH 529 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeee---eccc-CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee--eee
Confidence 9999999999999999998765332211 1222 7899999999999999987 8999999999887732222 224
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeE
Q 001319 980 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSV 1059 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v 1059 (1101)
...|.+++|||+.+++|||+-|..|.||+++.......+. .+|...+..+.|.. +..+++++.|.+|
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH~~gVn~v~wld--e~tvvSsG~Da~i 596 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAHLGGVNSVAWLD--ESTVVSSGQDANI 596 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----------cccccCceeEEEec--CceEEeccCccee
Confidence 8999999999999999999999999999999876654444 24444577899975 7899999999999
Q ss_pred EEEeCC
Q 001319 1060 KVMEPS 1065 (1101)
Q Consensus 1060 ~iWd~~ 1065 (1101)
++|++.
T Consensus 597 K~W~v~ 602 (603)
T KOG0318|consen 597 KVWNVT 602 (603)
T ss_pred EEeccc
Confidence 999874
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-50 Score=426.32 Aligned_cols=555 Identities=17% Similarity=0.281 Sum_probs=440.3
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+..+.+...|.+++.||+|..| ++-...|...+-++.....++... -...|.|+.|||
T Consensus 48 ~Tl~~e~~~NI~~ialSp~g~ll-lavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSP 106 (893)
T KOG0291|consen 48 YTLPLETRYNITRIALSPDGTLL-LAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSP 106 (893)
T ss_pred eeEEeecCCceEEEEeCCCceEE-EEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECC
Confidence 44556689999999999999854 555788888888887766654311 245899999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcc-----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--CCceeE
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~--~~~~~~ 488 (1101)
||+++|+|..+ .+.||..-.... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+ . .+-..+
T Consensus 107 ng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~ 183 (893)
T KOG0291|consen 107 NGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTY 183 (893)
T ss_pred CCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceE
Confidence 99999998654 699998754322 223335679999999999999999 899999999999999 3 333467
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-----------------------CCe-----------eeec
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----------------------MGS-----------RVDY 534 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-----------------------~~~-----------~~~~ 534 (1101)
.+.+|.+.|.+.-|.. +...+++.+.||.+.+|.... ++. +.-+
T Consensus 184 ~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 184 ALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 8899999999988865 557899999999999998761 111 0112
Q ss_pred cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 001319 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWD 613 (1101)
Q Consensus 535 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 613 (1101)
......+++.+|++..+.|+++-. .|...+|++....+++.+.-... .+..++|+..|.+++.|+ .-|.+.||+
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred cccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEE
Confidence 223357899999999999999875 78899999999999999887665 789999999999999977 458999999
Q ss_pred CCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
..+..-+...+ +|...+.+++++|||+++++|+.||.|+|||..++ -++.++
T Consensus 337 WqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTF------------------------- 388 (893)
T KOG0291|consen 337 WQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTF------------------------- 388 (893)
T ss_pred eeccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEe-------------------------
Confidence 98877665555 44668999999999999999999999999998765 111110
Q ss_pred ccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC
Q 001319 694 SSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 773 (1101)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~ 773 (1101)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCC-CeeEE
Q 001319 774 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFL 851 (1101)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l 851 (1101)
. .|...|+.+.|+.+|+.+++++ ||+|+.||+...+..+++..+.. ...|+
T Consensus 389 -------------------------t--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 389 -------------------------T--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred -------------------------c--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 0 2888899999999999999998 99999999999999999987443 46788
Q ss_pred EEecCCCCEEEEEeCCC-cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc-cceEEe
Q 001319 852 AFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR-KSVTIH 929 (1101)
Q Consensus 852 ~~s~~~~~~la~g~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~-~~~~~~ 929 (1101)
+..| .|.++.+|+.|. .|++|++++|+++..+.||.++|.+++|+|++..|+|++.|.+|++||+-..... ....+.
T Consensus 442 avD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 442 AVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR 520 (893)
T ss_pred EEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec
Confidence 8888 899999999886 7999999999999999999999999999999999999999999999999764321 122222
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCC-----------------CCCCCEEEEEEccC
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQD-----------------ALSAPISCAVYSCN 991 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~-----------------~h~~~v~~v~~s~d 991 (1101)
..+..++|+|||+.|+++. ||.|.+||+..+.....+.+.. ......+.+++|+|
T Consensus 521 -------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD 593 (893)
T KOG0291|consen 521 -------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD 593 (893)
T ss_pred -------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC
Confidence 6789999999999999965 9999999998877664443321 12578999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeeCCCCc-------------------------------------CCCcc------
Q 001319 992 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTY-------------------------------------LSPSV------ 1028 (1101)
Q Consensus 992 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------------------------------------~~~~~------ 1028 (1101)
|..|++|+....|++|++.++-++.+++-..- ..+.+
T Consensus 594 G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdls 673 (893)
T KOG0291|consen 594 GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLS 673 (893)
T ss_pred CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcc
Confidence 99999999999999999999877666551110 00000
Q ss_pred -cCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1029 -LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1029 -~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
....-.+.+.++.|+|+ ++-++.++..| |.||.+.+.
T Consensus 674 sRr~rpeIrv~sv~fsPt-graFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 674 SRRFRPEIRVTSVQFSPT-GRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred ccccCceEEEEEEEECCC-cCeeeeecccc-eEEEecCCc
Confidence 00112467889999995 77788887776 567777553
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-49 Score=406.74 Aligned_cols=536 Identities=17% Similarity=0.272 Sum_probs=426.8
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
-.+|...++-..|||.|- ++|+|...|.|||||....+.+...+ ++.-.++|..++|++|++
T Consensus 55 YtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ds~ 116 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDFDSK 116 (603)
T ss_pred eccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCCCCc
Confidence 346899999999999997 56999999999999987755444322 334567999999999999
Q ss_pred EEEEEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 420 YVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 420 ~las~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
.|++.+. ++..+++-.++|..+. ++.||...|++++|-|.-.. .++||++|++|.+|+ ..-+--.++..|..-
T Consensus 117 RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskF 192 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKF 192 (603)
T ss_pred EEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccc
Confidence 9988764 3334455455565555 78899999999999998776 899999999999999 766777888899999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc---CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
|+++.|+| ||.++++++.||+|.+||-.+++....+. .|.+.|.+++|+||+..+++++. |.+++|||+.+
T Consensus 193 V~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~ 266 (603)
T KOG0318|consen 193 VNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVST 266 (603)
T ss_pred eeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeec
Confidence 99999988 67999999999999999999999988887 78889999999999999999986 89999999999
Q ss_pred CeeEEEecccCC---cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 574 GTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 574 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.++++++..... ..+.++ |. +..|++.+.+|.|.+++......+..+.+|.. .|+++..+|++.+|++|+.|
T Consensus 267 ~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred cceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccC
Confidence 999999875443 123333 33 67999999999999999999998888877644 89999999999999999999
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
|.|.-|+..++.... +.
T Consensus 342 G~I~~W~~~~g~~~~--~~------------------------------------------------------------- 358 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDR--LA------------------------------------------------------------- 358 (603)
T ss_pred ceEEEEecCCccccc--cc-------------------------------------------------------------
Confidence 999999998772110 00
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
+..|...|.+++.+..+. +++++-|.++++.++......... .. .......++
T Consensus 359 --g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~~l 411 (603)
T KOG0318|consen 359 --GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPKGL 411 (603)
T ss_pred --cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCceeE
Confidence 034888888888887665 888888889988876432211110 00 022334488
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE--EeeccCC
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQ 888 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~--~~~~~h~ 888 (1101)
+..+|+.+++.+.++.|.+..-.++ ..++. ..-...+++++| ++..+|+|+.||.|+||.+..+.+. ..+..|.
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 9999988877777666666542222 12222 244678999999 9999999999999999999876543 3566899
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCc
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM 967 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~ 967 (1101)
++|++++||||+.+||++...+.|.+||+.+++.....- .-|. ..|.+++|+|+..++|+|+ |..|.||+++..
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHt-akI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHT-AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeee-eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 999999999999999999999999999999987632211 1122 7899999999999999987 999999999876
Q ss_pred eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 968 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
....... ..|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 563 ~~~i~ik--nAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 563 AKHIIIK--NAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred hhheEec--cccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 5553333 3457779999997 55679999999999999874
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-54 Score=421.57 Aligned_cols=377 Identities=21% Similarity=0.370 Sum_probs=313.1
Q ss_pred ccccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+.++++....++....-||.+.|.|++|||+|++ ||+|+.|.++|+||+.+..... +.++
T Consensus 96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~Kg 155 (480)
T KOG0271|consen 96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKG 155 (480)
T ss_pred chhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecC
Confidence 3367777777777777889999999999999996 5999999999999999877654 5899
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec-----CCCceEEEEecCCceEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-----d~~~~~l~s~~~d~~v~i 479 (1101)
|..+|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrI 231 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRI 231 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEE
Confidence 999999999999999999999999999999999988765 6889999999999976 455 7999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| ..+.++..+.||+.+|+|++|-. + .+|++++.|++|++|+...+.....+.+|.++|+.++.+.|- ++-
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy--~LR--- 303 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY--VLR--- 303 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh--hhh---
Confidence 99 88899999999999999999953 3 499999999999999999988999999999999999887552 111
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
+ -+|.|.++..-..++ . ..+.+..++ ...-
T Consensus 304 --------------t-----------------gaf~~t~~~~~~~se--------~-~~~Al~rY~----------~~~~ 333 (480)
T KOG0271|consen 304 --------------T-----------------GAFDHTGRKPKSFSE--------E-QKKALERYE----------AVLK 333 (480)
T ss_pred --------------c-----------------cccccccccCCChHH--------H-HHHHHHHHH----------Hhhc
Confidence 1 123333322111000 0 000011111 1111
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
..+..|++|++|.++.+|+.....+++..+
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rm-------------------------------------------------- 363 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRM-------------------------------------------------- 363 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhh--------------------------------------------------
Confidence 245789999999999999754331111111
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
T Consensus 364 -------------------------------------------------------------------------------- 363 (480)
T KOG0271|consen 364 -------------------------------------------------------------------------------- 363 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++.+
T Consensus 364 t--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 364 T--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred h--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence 0 3778899999999999999999 99999999999999999999999999999999 999999999999999999999
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999995
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=415.95 Aligned_cols=543 Identities=15% Similarity=0.244 Sum_probs=433.6
Q ss_pred CCcceeecCCCccccccCC---------CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecccc
Q 001319 314 SAEEVTYSSSRHQTWSLDD---------LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384 (1101)
Q Consensus 314 ~~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~ 384 (1101)
++..+.+++.+..+-.++. ..+.+.+.+..+.+|.|++|||||+ ++|+| ..+.+.||.......-.-.+
T Consensus 57 NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~-~gn~lqiw~~P~~~~~~~~p 134 (893)
T KOG0291|consen 57 NITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVG-CGNLLQIWHAPGEIKNEFNP 134 (893)
T ss_pred ceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEE-ecceeEEEecCcchhcccCc
Confidence 3445555555554333332 3445556667789999999999998 55665 56789999976433211111
Q ss_pred ceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCC
Q 001319 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK 464 (1101)
Q Consensus 385 ~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~ 464 (1101)
| ...+++.||-..|.++.||.|.++|++|+.|.++++|+++..+.+.. ..+.+|.+.|-++-|..+..
T Consensus 135 F-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 135 F-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGANSL 202 (893)
T ss_pred c-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccCcc
Confidence 2 23457899999999999999999999999999999999998776443 36889999999999999988
Q ss_pred ceEEEEecCCceEEEEEcC------------------------Cce-----e------EEeecCCcCeEEEecccCCCcc
Q 001319 465 LLCVVTCGDDKLIKVWELS------------------------GRK-----L------FNFEGHEAPVYSICPHHKENIQ 509 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd~~------------------------~~~-----~------~~~~~h~~~v~~v~~~~~~~~~ 509 (1101)
-+++.+.||.+.+|..+ ++. . .-+......|++.+|++.. .
T Consensus 203 --~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~ 278 (893)
T KOG0291|consen 203 --DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--N 278 (893)
T ss_pred --eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--e
Confidence 69999999999999833 111 0 1112223678999998844 7
Q ss_pred EEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceE
Q 001319 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 589 (1101)
.|+++-..|...+|++.....+..+.....+|..++|+..|.+++.++. +-|++.+|+..+...+.+.++|.. .+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~ 354 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RIT 354 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-cee
Confidence 8999999999999999999999998888899999999999999999986 478999999999999999999987 899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccccccc
Q 001319 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1101)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 669 (1101)
+++++|||.++++|++||+|+|||..++-++.++..| ...|+.+.|+..|+.+++.+-||+|+.||+... ...+++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 9999999999999999999999999999999999866 448999999999999999999999999998654 2222221
Q ss_pred CCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc
Q 001319 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 749 (1101)
Q Consensus 670 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 749 (1101)
.
T Consensus 432 ~------------------------------------------------------------------------------- 432 (893)
T KOG0291|consen 432 S------------------------------------------------------------------------------- 432 (893)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC-eE
Q 001319 750 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG-KI 827 (1101)
Q Consensus 750 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg-~i 827 (1101)
.......|++..|.|.++.+|+ |. .|
T Consensus 433 ----------------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 433 ----------------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred ----------------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 0223356888889999998888 53 59
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce-EEEeeccCCCCeeEEEEcCCCCEEEEE
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSS 906 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~l~s~ 906 (1101)
.||++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-... .+.++ .+...+.+++|+|||+.|+++
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEE
Confidence 9999999999999999999999999999 89999999999999999998653 33444 477889999999999999999
Q ss_pred eCCCcEEEEECCCCccccceE--------------EeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeee
Q 001319 907 GADAQLCVWSIDTWEKRKSVT--------------IHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIR 971 (1101)
Q Consensus 907 s~Dg~v~lwd~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~ 971 (1101)
.-||.|.+||+..+.+..... +...........+.+++|+||.+++++ ..+.|++|++.++-.++
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 999999999998765442221 111111122678899999999999995 58899999999887666
Q ss_pred EeccCCCC-----------------------------------------------------CCCEEEEEEccCCCEEEEE
Q 001319 972 QWTPQDAL-----------------------------------------------------SAPISCAVYSCNSQLVFAT 998 (1101)
Q Consensus 972 ~~~~~~~h-----------------------------------------------------~~~v~~v~~s~dg~~l~s~ 998 (1101)
.+...+.+ .-.|+++.|||.|+-.|++
T Consensus 619 kfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaa 698 (893)
T KOG0291|consen 619 KFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAA 698 (893)
T ss_pred eEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeee
Confidence 54332110 2247899999999999999
Q ss_pred eCCCcEEEEeCCCCcee
Q 001319 999 FCDGNIGVFDADTLRLR 1015 (1101)
Q Consensus 999 ~~dg~i~vwd~~~~~~~ 1015 (1101)
+..| +.||.+.+.-+.
T Consensus 699 tTEG-l~IYsld~~~~F 714 (893)
T KOG0291|consen 699 TTEG-LLIYSLDTTILF 714 (893)
T ss_pred cccc-eEEEecCCceEE
Confidence 9888 778988775443
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-48 Score=409.86 Aligned_cols=570 Identities=16% Similarity=0.228 Sum_probs=445.4
Q ss_pred cCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEE
Q 001319 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1101)
Q Consensus 354 pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vw 433 (1101)
-.|+++.+ +.--.|.+||+.+|+.... .+.......|+|++-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr~va~--~a~E~vn~WdlRtge~~~~-----------------l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRAVAV--SALEQVNIWDLRTGEIEKK-----------------LILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcEEEE--eccccEeEEeeecchhhhh-----------------hhhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 45885433 3445899999999965431 0122344689999999999999999999999999
Q ss_pred eecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEE
Q 001319 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512 (1101)
Q Consensus 434 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~ 512 (1101)
+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+|| ....-+..+.||...|+..-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999876554 7889999999999999999 799999999999999 77777899999999999988865 347999
Q ss_pred EeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC------------eeEEEe
Q 001319 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------------TIKRTY 580 (1101)
Q Consensus 513 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~~ 580 (1101)
+.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777765 888999998211 011111
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe-------------e-------------------ccCCC
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS-------------T-------------------DAEGG 628 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~-------------------~~~~~ 628 (1101)
........-.++..++++++++-+.|..+.++.+.+.+.+.. . ..-..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 111111233366777888899999999999998865321100 0 00001
Q ss_pred CCCCCeeEEecCCC---EEEEEEcCCcEEEEEccccccc---cccccCCCcccccCcceeeeeeeccccccccCCCCCcc
Q 001319 629 LPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~---~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 702 (1101)
...+.++.|-|.+. .|+. -.++++..|.++..... ......-....++..|.++.++.+...++.++...
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~S--- 395 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGES--- 395 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCc---
Confidence 12456777777543 3333 56788888887652111 11122233445677899999999988886655544
Q ss_pred eeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 703 VERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
..+|........+.+ ..+.+.+..|.|.+++++.|..+|.+.++|+...
T Consensus 396 -----------ikiWn~~t~kciRTi-------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~------------- 444 (888)
T KOG0306|consen 396 -----------IKIWNRDTLKCIRTI-------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASA------------- 444 (888)
T ss_pred -----------EEEEEccCcceeEEe-------ccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------
Confidence 337777766666666 3457889999999999999999999999986532
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCC-----ceEEEEee-------CCCCCee
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-----FKVMTTFM-------SPPPAST 849 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~-----~~~~~~~~-------~~~~~i~ 849 (1101)
.+.... . +|.+.|++++.+||++.+++|+ |.+|++||..- |.....+. .-...|.
T Consensus 445 ---------~l~Eti-~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 445 ---------SLVETI-R--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred ---------hhhhhh-h--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 111111 1 3999999999999999999999 89999998741 22211111 1246799
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe
Q 001319 850 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 850 ~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
|+.+|| |+++||++--|.+|+||-+++-+....+.||.-||.||..|||++.++|||.|++|++|-++-|.+.+.+..+
T Consensus 513 ~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 513 CVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred EEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999987766443
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
. ..|.++.|-|+...+.+ |.|+.|+-||.++.+.+..+..| ...|+|++.+|+|.++++++.|.+|++|.
T Consensus 592 d------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 592 D------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---HSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred c------CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---hheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 2 78999999998888777 56999999999999999999877 78999999999999999999999999999
Q ss_pred CCCC
Q 001319 1009 ADTL 1012 (1101)
Q Consensus 1009 ~~~~ 1012 (1101)
...-
T Consensus 663 ~tde 666 (888)
T KOG0306|consen 663 RTDE 666 (888)
T ss_pred ccCc
Confidence 7763
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-47 Score=402.94 Aligned_cols=568 Identities=16% Similarity=0.171 Sum_probs=433.6
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
.|+++|+... -.|.+||+.+|+..+.+.. ..-...|+|+.-++|.- +||.|..||.|+||+ .++....++.||..
T Consensus 33 ~Gr~va~~a~-E~vn~WdlRtge~~~~l~~-~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 33 KGRAVAVSAL-EQVNIWDLRTGEIEKKLIL-LKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CCcEEEEecc-ccEeEEeeecchhhhhhhh-hcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeeccccc
Confidence 5888877332 3599999999965554322 23345799999888887 799999999999999 88888899999999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|+.+.|.. .|..|++||.|+.|.+||+-.......+.+|...|+.+-|..+.+++++++. |+.|++||+++..
T Consensus 109 AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 109 AVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQH 182 (888)
T ss_pred ceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccce
Confidence 999999955 7789999999999999999999999999999999999999998899999885 9999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC------------eeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV------------NILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
+..+.-.|.+ .+..+++.+ +.+++++.|+.+.+|++... +...++...+. .....++..+++++
T Consensus 183 Cf~Thvd~r~-Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk-~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 183 CFETHVDHRG-EIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSK-GREINLVTDFSDRF 258 (888)
T ss_pred eeeEEecccc-eEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccC-CceeEEeecCcccE
Confidence 9999999887 899999987 78999999999999998211 01112222221 23445666778889
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcc---eeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI---ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
+++-+.|..+.++.+.+..+..+.+...........- ....+...-+.. +
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~-----------------------i---- 311 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE-----------------------I---- 311 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH-----------------------H----
Confidence 9999999999999988764443333221000000000 000000000000 0
Q ss_pred eCCCeEEEEcCCCCCCcccEEEEEeecCccc--EEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 721 DSGQCRLVTMPESTDTSSKVVRLLYTNSAVG--LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
..... .....+|.++.+.|.+.. .+..-.++.+..|.++.... .. +....... +
T Consensus 312 --~r~~~------ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~-~~-------------p~~~~~~~--i 367 (888)
T KOG0306|consen 312 --KRLET------IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK-TS-------------PEADRTSN--I 367 (888)
T ss_pred --HHHHh------eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC-CC-------------ccccccce--e
Confidence 00000 113445666666665432 23335667888887764111 00 00011111 1
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
...+|...|+++++|.|...+++|.++.+++|+..+.++++++.. +-+.+..|.| +++++++|...|.+.+||+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 223599999999999999999999999999999999999999974 4789999999 8999999999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CccccceEEe-ecCCCCCCCcceEEEcCCCCEEE
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-----WEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~-----~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
..+.+.++|.+.|..++.+||++.+++||.|.+|++||..- |...+...+. ...-.-...+.++.+||||++|+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999742 2211111100 00001126799999999999999
Q ss_pred EEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCC
Q 001319 953 VVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1031 (1101)
Q Consensus 953 ~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h 1031 (1101)
++- |.+++||-+++.+....+.+| .-||.|+.+|||+++++||+.|..|+||-++-|.+...+.. |
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGH---kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA----------H 591 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGH---KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA----------H 591 (888)
T ss_pred EEeccCeEEEEEecceeeeeeeccc---ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc----------c
Confidence 975 999999999999999998876 99999999999999999999999999999999998766542 5
Q ss_pred CCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1032 SQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1032 ~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+ .++++.|.| +..+++|+|.||.|+-||-..-+
T Consensus 592 dD--Svm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 592 DD--SVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred cC--ceeEEEEcc-cceeEEEecCcceEEeechhhhh
Confidence 55 557999999 79999999999999999987766
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-48 Score=383.42 Aligned_cols=366 Identities=18% Similarity=0.268 Sum_probs=293.9
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|+||+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 488999999999999999999999999999999999977665 7899999999999999999 89999999999999
Q ss_pred E-cCCcee-EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 481 E-LSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 481 d-~~~~~~-~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
| .+|+++ ..+.+|...|++++|.|-. ..|..+++++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777665 7899999999999997631 1255567777663
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
||.++|||+..+.++..+.+|.. .|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 77788888888888889999988 89999998764 999999999999999999999999998877 78888887
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
.+- .|-+|..| +.++..
T Consensus 298 Tdy-~LRtgaf~------------------------------------~t~~~~-------------------------- 314 (480)
T KOG0271|consen 298 TDY-VLRTGAFD------------------------------------HTGRKP-------------------------- 314 (480)
T ss_pred chh-hhhccccc------------------------------------cccccC--------------------------
Confidence 542 11111111 111110
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
-..++. .......|+
T Consensus 315 ----------------------------------~~~se~--------------------~~~Al~rY~----------- 329 (480)
T KOG0271|consen 315 ----------------------------------KSFSEE--------------------QKKALERYE----------- 329 (480)
T ss_pred ----------------------------------CChHHH--------------------HHHHHHHHH-----------
Confidence 000000 000000000
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECC-CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 876 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~ 876 (1101)
.+.-..+..+++|+ |.++.+|+.. +.+++..+.+|...|..+.||| |++++|+++-|.+|++|+..
T Consensus 330 -----------~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 330 -----------AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred -----------HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCC
Confidence 01112357888888 6889999975 4558889999999999999999 99999999999999999999
Q ss_pred cceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeC
Q 001319 877 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 956 (1101)
Q Consensus 877 ~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d 956 (1101)
+|+.+..|+||-++|+.++|+.|.++|++|+.|.++++|++.+.+..
T Consensus 398 tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~--------------------------------- 444 (480)
T KOG0271|consen 398 TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK--------------------------------- 444 (480)
T ss_pred CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec---------------------------------
Confidence 99999999999999999999999999999999999999999884321
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
..+. +|..+|.++.|+|||+.+++|+.|..+++|.
T Consensus 445 --------------~DLp---Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 445 --------------QDLP---GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------ccCC---CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1122 3378888888888888888888888888884
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.4e-45 Score=381.83 Aligned_cols=614 Identities=13% Similarity=0.172 Sum_probs=414.8
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE--
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-- 425 (1101)
..++-+|... ++|- -....|.+||.+..+.- +++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccC
Confidence 4555666554 3332 23457889998765533 34667888999999999999999985
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec--CCceEEEEEcCCceeEEeecCCcCeEEEecc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
....++||++.....+. ++..|.-.|+|++|+|.++ ++++.+ .|-.|.+||-.-.....-..-...|..++|+
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fs 174 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFS 174 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEEc
Confidence 56679999999876555 7889999999999999999 677665 4556788882222222222345678899986
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCeee---eccCCCCceEEEEE------------ccCCCEEEEeecCCCCCceEEE
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLY------------SADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~------------s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
. ||.++++.+ ...|++|.++...... .+.+.....-.+.+ ..+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 778888776 6799999987765211 01111000000100 0111111111 222221
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc----------------------C
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA----------------------E 626 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~ 626 (1101)
+ .+.+++.++.........+++.+ .+++++|+.+|.|++|+..+-.-..+++. .
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 1 22222222222222244556665 57999999999999999877554443321 1
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceecc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 706 (1101)
...+...++.|++....|.+...|..++|||+++..+.-+.. ..-.+...
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~---s~lyHS~c--------------------------- 371 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS---SMLYHSAC--------------------------- 371 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEecccccccccee---eeeeccce---------------------------
Confidence 112334578899999999999999999999998653221111 11001111
Q ss_pred CCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC--CCeee-----
Q 001319 707 SPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS--GKATA----- 779 (1101)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~--~~~~~----- 779 (1101)
+|.+....- .-|... .+.-|.+- ++++++|++|++|++........ .....
T Consensus 372 ---------iW~Ve~~p~---------nv~~~~---~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k 429 (1080)
T KOG1408|consen 372 ---------IWDVENLPC---------NVHSPT---AACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK 429 (1080)
T ss_pred ---------eeeeccccc---------cccCcc---cccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence 333322110 001110 11122333 89999999999999875211000 00000
Q ss_pred ----eccccc-cccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEE
Q 001319 780 ----SAVPQH-WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF 853 (1101)
Q Consensus 780 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 853 (1101)
..+.+. -+...+..-............++++++||||++||+|+ .|.++||++...+....+..|..+|.|+.|
T Consensus 430 i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 430 IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 000000 01111110000011113566799999999999999999 799999999999999999999999999999
Q ss_pred ecC--CCCEEEEEeCCCcEEEEEeecc-eEEEeeccCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 854 HPQ--DNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSL--NILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 854 s~~--~~~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~--~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
|.. ..++||+++.|.-|.|||+... .++.++.+|+..|+++.|...| ..++++|.|+.|.+--.........+..
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 863 3579999999999999999754 5678899999999999998877 7899999999876544332111111111
Q ss_pred eecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 929 HIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
....- ....+..+++.|..+++++ +.|+.|+||++.++++++.+++.++|.+....+...|.|-||++...|.++.++
T Consensus 590 ~t~t~-~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 590 HTQTL-SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV 668 (1080)
T ss_pred ccccc-ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence 11111 1157889999999999998 569999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1008 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1008 d~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
|.-+|++++++.+ |+. .++++.|.+ |-.-|++.+.||+|.||.+..
T Consensus 669 Df~sgEcvA~m~G----------HsE--~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFVSGECVAQMTG----------HSE--AVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeccchhhhhhcC----------cch--heeeeeecc-cchhheeecCCceEEEEECch
Confidence 9999999998875 665 457999999 789999999999999999964
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-41 Score=340.68 Aligned_cols=341 Identities=18% Similarity=0.294 Sum_probs=288.0
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccc-cc----cCCc
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI-FK----DVPI 407 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~----~h~~ 407 (1101)
.|....+.++|+.+|.+++|+|-..-++|+|+.|-..++|++....-.... ...+++.+ .. ....
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----------q~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----------QLVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----------hhhhhhhhhhhcccCCccC
Confidence 455566777899999999999987657899999999999998741110000 00001000 11 1246
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.|++++|+.+|..||+|+.||.+++|+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 89999999999999999999999999998753 33 6889999999999999999 899999999999999 99999
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceE
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
.+.+.-|..+-..|.|... .-+++++.|+.|+++.+....+..++.+|.+.|.++.|.|.|.+|++++. |+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTL 383 (524)
T ss_pred EEeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCee
Confidence 9999999998777888532 47899999999999999999999999999999999999999999999996 9999
Q ss_pred EEEeCCCCeeEEEecccCCcceEEEEEeCCC---------CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
+||..........+.+|.+ .|..+.|+|+| ..+++++.|++|++||+..+.++..+..|. .+|.+++|
T Consensus 384 kiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvaf 460 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAF 460 (524)
T ss_pred EeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEe
Confidence 9999999999999999988 78889999876 368899999999999999999999987654 48999999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
+|+|+++++|+.||.|.+|+..++ +.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~------------------------------------------------ 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQ------------------------------------------------ 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccch-heeEeec------------------------------------------------
Confidence 999999999999999999999877 3332221
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus 492 ------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 3455888999999999999999999998775
No 15
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.1e-38 Score=337.39 Aligned_cols=586 Identities=15% Similarity=0.154 Sum_probs=438.1
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCe
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
..|..-|+.++++.+-+.++.+||.+.-..+.. -+.+...|+|++=. ..++.+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~--~~~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASD--KDYVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEec--CceEEEecCc-E
Confidence 445555666778888999999999987666542 23577899999865 4455555433 4
Q ss_pred EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-cee---EEe-ecCCcCeEEEecc
Q 001319 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL---FNF-EGHEAPVYSICPH 503 (1101)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~---~~~-~~h~~~v~~v~~~ 503 (1101)
|.+|-. |+.++. .+.+|.+.|.-+.- =|. .++++..++.+.||+ ..+ ..+ ..+ +...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 444443 45677777776654 355 689999999999999 443 221 122 22223377775 5
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
|+---+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5444456889999999999999999999999999999999999999889999885 999999999999999999876
Q ss_pred CCcceEEEEEeCCCCEEEE-EeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 584 RKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+++..+.. .|.+.|....|-|....+++++.|+.+++|-.+++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 44 8999999999987665 55779999999999888877652 234578999999999999999999999998766442
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEE
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVR 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 742 (1101)
...+.+ +. ..+|..+..+
T Consensus 322 g~pR~L------------------------------------------------------------R~--R~GHs~Pp~~ 339 (910)
T KOG1539|consen 322 GVPRLL------------------------------------------------------------RS--RGGHSAPPSC 339 (910)
T ss_pred Ccchhe------------------------------------------------------------ee--ccCCCCCchh
Confidence 111111 11 1458888888
Q ss_pred EEee-cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC-----C
Q 001319 743 LLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-----D 816 (1101)
Q Consensus 743 ~~~s-~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----g 816 (1101)
+.|. .+|..++.++.|++.+.+++....+...-.. .................-.-.+|..+++... .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 8887 7888999999999988887654322111000 0011110000000000012345666666542 1
Q ss_pred CeEEEE-cCCeEEEEECCCceE-EEEee-----CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee---cc
Q 001319 817 SYVMSA-TGGKISLFNMMTFKV-MTTFM-----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL---KG 886 (1101)
Q Consensus 817 ~~la~~-~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~---~~ 886 (1101)
..++.. ++...+.|+..+... ...+. .....+++++.++ .|++.+.|...|.|.+|++.+|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 233333 256799999976554 22222 2336799999999 9999999999999999999999888888 58
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcC
Q 001319 887 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS 965 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~ 965 (1101)
|.++|++++...-++.+++++.+|.+++||......+....+. .++..+..+.....+++ .+|-.|.++|..
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-------SSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-------CCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 9999999999888899999999999999999987644443332 56778888888887777 568899999999
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
+-+.++.+.+| ...|++++|||||+||++++.|++|++||+.++.++-.+.. .. .++++.|+|
T Consensus 565 t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-----------d~--~~~sls~SP- 627 (910)
T KOG1539|consen 565 TRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-----------DS--PCTSLSFSP- 627 (910)
T ss_pred hhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------CC--cceeeEECC-
Confidence 99999999876 99999999999999999999999999999999999887762 22 346899999
Q ss_pred CCCEEEEEECC-CeEEEEeCCC
Q 001319 1046 EPNQFAIGLTD-GSVKVMEPSE 1066 (1101)
Q Consensus 1046 d~~~l~s~~~D-g~v~iWd~~~ 1066 (1101)
.+++|+|+..| ..|++|.=.+
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 59999999999 6799997443
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-41 Score=337.95 Aligned_cols=283 Identities=17% Similarity=0.266 Sum_probs=265.5
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--C
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--g 418 (1101)
++.+.+|..+.||+|++ ++|||+-+|.+++|+..+...+. +|.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45677999999999998 67999999999999999886654 49999999999999996 6
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
..||+|+.||+|++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999987766 7889999999999999999 899999999999999 8888888999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.+++|++ ||.++++|+.|..-||||++++.++..+.+|...|.+++|+|+|..+++|+. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999988 7789999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred EEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 656 (1101)
.++.+|.+ .|+.++|+| .|.+|++++.|+++++|.-.+..+++.+.+|.. .|.++.+++|+..+++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 688999999999999999999999999987755 89999999999999999999999999
Q ss_pred E
Q 001319 657 A 657 (1101)
Q Consensus 657 d 657 (1101)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.6e-38 Score=329.99 Aligned_cols=583 Identities=14% Similarity=0.177 Sum_probs=400.4
Q ss_pred eeEeecCCCcEEEEEEecCCc--eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 337 VAVSLHQGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~--~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
....-+|..+|+|+.|-|+.+ -.+++|+.|+.|++|.+........ ..+.+|...+.|+
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i-----------------~~~~g~~~~~~cv-- 107 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI-----------------YTIQGHCKECVCV-- 107 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------------EeecCcceeEEEE--
Confidence 334445999999999999876 1358999999999999984333321 2356665555554
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeee--cccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC--ceeEE
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLFN 489 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~--~~~~~ 489 (1101)
+..-....+...|+.+.+||.+..+. .....+. .-..--.|+++.++.+..+++.|+.+..|.++. ..+ +.+..
T Consensus 108 ~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 108 VARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 43333333336899999999965541 1111111 112233567777866655788888888999998 533 45678
Q ss_pred eecCCcCeEEEecccCCC-ccEEEEeccCCeEEEEecCCCC------------------------ee-------eeccCC
Q 001319 490 FEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG------------------------SR-------VDYDAP 537 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~------------------------~~-------~~~~~~ 537 (1101)
+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... .. ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999976543 4678999999999999774332 00 023478
Q ss_pred CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEec----ccCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 538 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
..+|.++.|+|.+..|++++. |.++.+|...+. --+.... ++........-|+|+++.+++-+.-|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 899999999999998998886 889999987654 2222221 122224667889999999999999999999
Q ss_pred EECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccc
Q 001319 612 WDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 612 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
|... ...........+|...|.+++|+|.|.+|.+.+.|.+-|++..-..+.....+..+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP------------------- 403 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP------------------- 403 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc-------------------
Confidence 9832 23334444455677799999999999999999999999998654221111111110
Q ss_pred cccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 691 SAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
..|.-.++++++-+....+++++.+..+|+++....-
T Consensus 404 -------------------------------------------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 404 -------------------------------------------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred -------------------------------------------ccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 1255556666666655556666666666666643210
Q ss_pred ----------------CCCCCCee-----------------------------eeccccccccCCcc--------ceeec
Q 001319 771 ----------------QNPSGKAT-----------------------------ASAVPQHWLPSSGL--------LMAND 797 (1101)
Q Consensus 771 ----------------~~~~~~~~-----------------------------~~~~~~~~~~~~~~--------~~~~~ 797 (1101)
..+.+... ......+..+.... .....
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 00000000 00000111111100 01111
Q ss_pred cCCCCCCCCEeEEEecCCCCeEEEEc-C-----CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEE
Q 001319 798 VAGVNLEEAVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 798 ~~~~~~~~~v~~~~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~ 871 (1101)
+ .+|...|.+++.+|+|+++|++. . ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|.++.
T Consensus 521 L--YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 521 L--YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVS 597 (764)
T ss_pred h--ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEE
Confidence 2 36999999999999999999985 1 2499999999999999999999999999999 999999999999999
Q ss_pred EEEeecceE----EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 872 IYNVRVDEV----KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 872 iwd~~~~~~----~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
+|....... ....+.|+.-|.+..|+|++++++|+|.|++|++|............+ ........++++++.|-
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF--ACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--chhccCCceeeEEeecc
Confidence 999865422 233678999999999999999999999999999999988732111111 11112267888888763
Q ss_pred ----CC-EEEEEe-CCeEEEEEcC---------CceeeeEeccCCCCCCCEEEEEEccC----------CCEEEEEeCCC
Q 001319 948 ----QV-RMLVVH-ETQLAIYDAS---------KMERIRQWTPQDALSAPISCAVYSCN----------SQLVFATFCDG 1002 (1101)
Q Consensus 948 ----~~-~l~~~~-d~~i~v~d~~---------~~~~~~~~~~~~~h~~~v~~v~~s~d----------g~~l~s~~~dg 1002 (1101)
.. .+++|- .|.|.+|... +......+....+|...|+.+.|+|- ...|++|++|.
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 22 455554 8999999865 12223334444567889999999974 23569999999
Q ss_pred cEEEEeCC
Q 001319 1003 NIGVFDAD 1010 (1101)
Q Consensus 1003 ~i~vwd~~ 1010 (1101)
.++|+++.
T Consensus 756 ~vri~nv~ 763 (764)
T KOG1063|consen 756 SVRIFNVD 763 (764)
T ss_pred eeEEeecc
Confidence 99999875
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-38 Score=330.06 Aligned_cols=474 Identities=16% Similarity=0.267 Sum_probs=358.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+++.|.+|.|+|....+ .++-..|.|.|||.++...+.. +.-..-+|.+..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 78899999999999865 5567899999999999887763 444567999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v 500 (1101)
+|+.|..|+||+..+++.+. .+..|.+.|++++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 7889999999999999998 899999999999999 4456789999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC--CEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+|.|. |.+.+++++.|++|++|.+....+.+++.+|...|+|+.+-+-| .+|++|+. |..|++||.++..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99997 45789999999999999999999999999999999999998755 58999985 8999999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.||.+ .+..++|+|.-..+++|++||+++||+..+.++..++.... ..+.|++-.+.++.+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999998888877654 38999999999999999999888765 22
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.... ..+...+.|+. +|... +
T Consensus 298 gree------------------P~vsMd~~gKI------------------------iwa~~-----------------~ 318 (794)
T KOG0276|consen 298 GREE------------------PAVSMDSNGKI------------------------IWAVH-----------------S 318 (794)
T ss_pred cCCC------------------CceeecCCccE------------------------EEEcC-----------------c
Confidence 2110 01122222211 11111 0
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCC-CCCCEeEEEecCCCC
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDS 817 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~ 817 (1101)
.|..+. +-+.+.++ +...|+.+.....+.+ ..-....++-||+|+
T Consensus 319 ei~~~~-------~ks~~~~~---------------------------ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGr 364 (794)
T KOG0276|consen 319 EIQAVN-------LKSVGAQK---------------------------EVTDGERLPLSVKELGSVEIYPQTLAHSPNGR 364 (794)
T ss_pred eeeeee-------ceeccCcc---------------------------cccCCccccchhhhccccccchHHhccCCCCc
Confidence 111100 00000000 1222222222111111 111223578899999
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
++++++||.-.||..-..+- ...+.-....|++ |....|+-..++.|+++ ++.+....+...-. +..+
T Consensus 365 fV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i- 432 (794)
T KOG0276|consen 365 FVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGI- 432 (794)
T ss_pred EEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc---eeee-
Confidence 99999999988886422211 2345667789999 77777888889999998 56666555542211 1111
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
-.|.+|...+ ++.+++||-++++.+....+ ....+.|+.+|.+++++.|...+++...
T Consensus 433 ~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v---------~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 433 FGGPLLGVRS-SDFLCFYDWESGELVRRIEV---------TSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred cCCceEEEEe-CCeEEEEEcccceEEEEEee---------ccceeEEecCCCEEEEEecCceeEEEec
Confidence 2344555444 56699999999887665543 3457899999999999887776666544
No 19
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=335.22 Aligned_cols=568 Identities=14% Similarity=0.176 Sum_probs=375.6
Q ss_pred CCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|...++|+||||+|+| +|+|- ....+++|++.....+.. |..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 6679999999999996 58874 456899999988766553 7789999999999999999
Q ss_pred EEEEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE---EeecCC
Q 001319 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF---NFEGHE 494 (1101)
Q Consensus 421 las~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~---~~~~h~ 494 (1101)
+++.+. |-.|.+||+...-... -..-...|..++|+.||. |+++.+ ...|++|. ..++... .+.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998664 6678899887543221 223456799999999999 788877 78999999 4343211 111111
Q ss_pred cCeEEEecccCCCccEEEEe-------------ccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecCC
Q 001319 495 APVYSICPHHKENIQFIFST-------------AIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~-------------~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.-.-.+.+ ..+++.+ +..|.+.-| ......-+. ......-.|++.+ .+++++|+.
T Consensus 210 ~~lg~lr~-----n~f~avaCg~gicAestfait~qGhLvEF--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRF-----NEFLAVACGVGICAESTFAITAQGHLVEF--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhcccccc-----chhhhhhhcCcccccceEEEecccceeee--chhhhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 11111110 0111111 112222222 111111000 0011123455554 568888886
Q ss_pred CCCceEEEEeCCCCeeEEEecccC--------------------C---cceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFR--------------------K---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~--------------------~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
++.|++++..+-....++...+ . ...-.+.|++....|.+...|..++|||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 9999999988754443332110 0 11223678888899999999999999999874
Q ss_pred eeeEee-ccCCCCCCCCeeEEec-----------CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeee
Q 001319 618 NILTST-DAEGGLPNLPRLRFSK-----------EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1101)
Q Consensus 618 ~~~~~~-~~~~~~~~v~~v~~s~-----------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1101)
+.+... ..-.|...|+.+.--| -...+++++.|++|++|+++... .-..+.......... .+.+
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~~l~---ki~y 432 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSANLS---KIPY 432 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecccchhhhh---cCcc
Confidence 433211 1111222344433322 12358899999999999998641 111111111111100 0001
Q ss_pred eeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 686 KVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 686 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..+...++--...+ +++.. .....+....+.+++++|+|++|+++..-|.+++|+
T Consensus 433 ~d~~~q~~~d~~~~----------------~fdka---------~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 433 EDSTQQIMHDASAG----------------IFDKA---------LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ccCchhhhhhccCC----------------ccccc---------chhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 00000000000000 00000 000123556789999999999999999999999999
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC---CCCeEEEEc-CCeEEEEECC-CceEEEE
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT-GGKISLFNMM-TFKVMTT 840 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~-~~~~~~~ 840 (1101)
+..-.. + ..+ ..|+.+|.|+.+|. ..++||+++ |.-|+|||+. +..++.+
T Consensus 488 Lq~l~~----------------------~-~~~--eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 488 LQELEY----------------------T-CFM--EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred ehhhhh----------------------h-hhe--ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence 763210 0 001 14999999999986 357899998 7789999986 4567888
Q ss_pred eeCCCCCeeEEEEecCCC--CEEEEEeCCCcEEEEEeecceEEEeeccC-----CCCeeEEEEcCCCCEEEEEeCCCcEE
Q 001319 841 FMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQLC 913 (1101)
Q Consensus 841 ~~~~~~~i~~l~~s~~~~--~~la~g~~dg~v~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~v~ 913 (1101)
+.+|...|+++.|.. .+ ..+++++.|..|.+--.....-...+..| ...+++++..|..+++++++.|..|+
T Consensus 543 ld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 999999999999988 44 67788889988776444322222223222 24689999999999999999999999
Q ss_pred EEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCC
Q 001319 914 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992 (1101)
Q Consensus 914 lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 992 (1101)
||+++++++.+.+.-. .++. +....+...|.|.++++ ++|+++.+||..+|+++....+| ...|+.+.|++|.
T Consensus 622 if~i~sgKq~k~FKgs--~~~e-G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGS--RDHE-GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDC 695 (1080)
T ss_pred EEeccccceeeeeccc--ccCC-CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccc
Confidence 9999999977655432 2222 56778899999999999 57999999999999999998876 8999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 001319 993 QLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~ 1011 (1101)
++|++.+.||.|.||.+..
T Consensus 696 kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhheeecCCceEEEEECch
Confidence 9999999999999999985
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-39 Score=304.70 Aligned_cols=293 Identities=22% Similarity=0.312 Sum_probs=255.5
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
-+|++.|+.++..+.+..++.+++.|.++.+|++......... +.+.+.||...|..++.++||.+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCce
Confidence 3599999999999998889999999999999999765332211 22358999999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecC--CcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h--~~~v~ 498 (1101)
.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ -++||+.|++|++|+.-|.+..++..+ .+.|.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 9999999999999999997666 6889999999999999999 699999999999999778887777654 78999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||+..++.+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNLY 228 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCceeE
Confidence 999999987889999999999999999999999999999999999999999999999885 9999999999999988
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC-------CCCCCeeEEecCCCEEEEEEcCC
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
.+.... .|.+++|+|+. +.++...+..|+|||+.++..+..+..... ......++|++||..|+.|..|+
T Consensus 229 sl~a~~--~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 229 SLEAFD--IVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred eccCCC--eEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 887643 69999999985 455555556699999999988877654321 22346789999999999999999
Q ss_pred cEEEEEcc
Q 001319 652 GFKILANA 659 (1101)
Q Consensus 652 ~i~iwd~~ 659 (1101)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999864
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-40 Score=329.37 Aligned_cols=284 Identities=21% Similarity=0.314 Sum_probs=260.1
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
|-+.+|..+.||+|++.||+|+-+|.++||+..+...+. ++.||.+.|.++.|+|.....-++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999886555 799999999999999984222799999999999999 5
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 5588999999999999999998 6689999999999999999999999999999999999999999999999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g 641 (1101)
|..-+|||+++|+++..+.+|.+ .|..++|+|+|-.+++|+.|++++|||++..+.+.++..|.. -|..|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88889999999999999999887 899999999999999999999999999999999888887755 799999999 78
Q ss_pred CEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
.+|++++.|+++++|...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999998766 444444
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|.++|.++.+++++..+++++.|.++++|.
T Consensus 427 ------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34999999999999999999999999999994
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-38 Score=342.67 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=239.8
Q ss_pred ccCCCCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc---ccceee---------cccccCc
Q 001319 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIW---------DMAACSL 395 (1101)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~---~~~~~~---------d~~~~~~ 395 (1101)
..+.+|..+..++. ....|+|..||+|++ ++|.|..|..|++|.+...+.... ..+... +......
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 34567777887777 567899999999998 789999999999999985331110 000000 1111112
Q ss_pred cccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 396 ~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
....+++.||.++|..+.|+||.++|++|+.|++||+|.+.+..++. .++||..+|+++.|+|-|- ++||+|.|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~ 515 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ 515 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence 22334589999999999999999999999999999999999987766 6789999999999999998 899999999
Q ss_pred eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEE
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
+.++|. ....+++.+.||.+.|.|+.|+| +..++++||.|.++|+||+.++.....+.+|..+|.+++|||+|++|+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 999999 88899999999999999999999 558999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
+|+. ++.|.+||+.+++++..+.+|.+ .+.++.|+.+|..|++||.|.+|++||+..
T Consensus 594 Sg~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9986 99999999999999999999955 899999999999999999999999999865
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.2e-39 Score=304.58 Aligned_cols=293 Identities=16% Similarity=0.252 Sum_probs=263.9
Q ss_pred cceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE
Q 001319 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1101)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 413 (1101)
-+..+++. |...|.++.|++|.++ +++++.||.+.|||.-+..+++. ++-...+|..+|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA 104 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCA 104 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEE
Confidence 33445665 9999999999999996 58999999999999988776653 444678999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCc---ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~---~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
|+|.|+++|+|+.|+...||++.+.+ ..+...++.+|++.+.|+.|.+|++ |+|++.|.+..+|| .+|+.+..
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEE
Confidence 99999999999999999999998652 2344447899999999999999886 89999999999999 99999999
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
|.||.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. |++.++|
T Consensus 182 f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRly 256 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLY 256 (343)
T ss_pred ecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEE
Confidence 9999999999999886 6789999999999999999999999999999999999999999999999986 9999999
Q ss_pred eCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 570 NESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
|++..+.+..|.... ...+++++|+..|++|++|..|..+.+||.-.++.+..+.+|++ .|.++..+|||.-+++|+
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 999999888887543 23688999999999999999999999999999999999987755 899999999999999999
Q ss_pred cCCcEEEEE
Q 001319 649 ADNGFKILA 657 (1101)
Q Consensus 649 ~d~~i~iwd 657 (1101)
-|.+++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-37 Score=323.52 Aligned_cols=594 Identities=14% Similarity=0.168 Sum_probs=407.0
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC---EEEEEEC
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAFT 426 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~---~las~~~ 426 (1101)
..|.|.+ ++|.| ....|.+||..+.... ..+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEccC
Confidence 3346665 45665 5678999998765322 25899999999999999988 8999999
Q ss_pred CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc-CCc--eeEEeecCCcCe--EEEe
Q 001319 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR--KLFNFEGHEAPV--YSIC 501 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~-~~~--~~~~~~~h~~~v--~~v~ 501 (1101)
|+.|++|.++. +.+.....+.+|...+.| +...-. .......|+++.+||. ..+ +...+.--.+.+ .|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~c--v~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVC--VVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEE--EEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 334445567776655544 443322 2222378999999995 444 223333222333 3444
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCC--CeeeeccCCCCceEEEEEccCCC---EEEEeecCCCCCceEEEEeCCCCe-
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~- 575 (1101)
+.+.++.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555333345566777788888855433 44567889999999999987655 455555 58999999764221
Q ss_pred --------------------eE----------EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEee
Q 001319 576 --------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTST 623 (1101)
Q Consensus 576 --------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1101)
.. ..+.||.+ .|.++.|+|.+..|++++.|.++.+|...+. -.+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11237776 8999999999999999999999999987654 222222
Q ss_pred cc---CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCC
Q 001319 624 DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1101)
Q Consensus 624 ~~---~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 700 (1101)
.. .+.........|+|+++.+++-+..|..++|...+.... ..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w--~~-------------------------------- 353 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW--TQ-------------------------------- 353 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce--ee--------------------------------
Confidence 11 112234678899999999999999999999983322110 00
Q ss_pred cceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeee
Q 001319 701 CKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 780 (1101)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 780 (1101)
.+.-.+|...|+.+.|.|.|.++++.+.|.+-|++---..+.
T Consensus 354 -----------------------------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~--------- 395 (764)
T KOG1063|consen 354 -----------------------------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ--------- 395 (764)
T ss_pred -----------------------------ccccccccccceeeeecCCCCEEEEeccccceeeeccccccc---------
Confidence 011156999999999999999999999999999874221100
Q ss_pred ccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcC-CeEEEEECC--------------------------
Q 001319 781 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMM-------------------------- 833 (1101)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-g~i~vwd~~-------------------------- 833 (1101)
.|.- + .+-+-|...++|+++-+....+++|.| ..+|+|+..
T Consensus 396 ----~wHE----i----aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 396 ----EWHE----I----ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ----ceee----e----cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 0110 0 011127788888888775555666654 557777651
Q ss_pred -----------------CceE---------------------------------EEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 834 -----------------TFKV---------------------------------MTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 834 -----------------~~~~---------------------------------~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
+|.. +..+.+|..+|.+++.+| +++++|+
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliAS 542 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIAS 542 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEee
Confidence 0100 012346778899999999 9999999
Q ss_pred EeCC-----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 864 GTED-----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 864 g~~d-----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
++.. ..|++|+..+...+..+.+|+-.|+.|+|||||++|++.+.|.++.+|......... ..+.....|. .-
T Consensus 543 aCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa~~k~Ht-RI 620 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFACLKAHT-RI 620 (764)
T ss_pred hhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhccccccc-eE
Confidence 9854 468999999988888999999999999999999999999999999999986543221 2222233343 67
Q ss_pred cceEEEcCCCCEEEEEe-CCeEEEEEcCCc--eeeeEeccCCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCC
Q 001319 939 DTRVQFNADQVRMLVVH-ETQLAIYDASKM--ERIRQWTPQDALSAPISCAVYSCN-----SQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~--~~~~~~~~~~~h~~~v~~v~~s~d-----g~~l~s~~~dg~i~vwd~~ 1010 (1101)
|.++.|+|++.++++++ |++|.||..... +.+..+.. ..+..+|+++++.|- +..++.|-+.|.|.+|...
T Consensus 621 IWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 621 IWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 88999999999999855 999999999887 55554322 234889999999872 2367789999999999966
Q ss_pred CCceeEeeCCCC--cCCCcccCCCCccceEEEEEecCC---------CCEEEEEECCCeEEEEeCC
Q 001319 1011 TLRLRCYIAPST--YLSPSVLNGSQTVYPLVVAAHPLE---------PNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1011 ~~~~~~~~~~~~--~~~~~~~~h~~~~~~~~l~~~p~d---------~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.-.......... ......++|.. .+..+.|.|.. ...|++|++|..++++++.
T Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~~--aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 700 REHRQVTVGTFNLDTRLCATIGPDS--AVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccceeeeeccccccccChHH--hhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 211111100000 00011122444 44578898752 2356999999999999874
No 25
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-35 Score=316.21 Aligned_cols=559 Identities=13% Similarity=0.177 Sum_probs=414.4
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+.+.|.|++-+.+ +.+| + ..+.|.+|.- |+.+. +++.+|...|.-+. |=|.++
T Consensus 74 ~lp~~I~alas~~~--~vy~-A-~g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKD--YVYV-A-SGNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCc--eEEE-e-cCcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceE
Confidence 37789999987766 3333 2 3446777764 43332 24667887887765 458999
Q ss_pred EEEECCCeEEEEeecCC-cccc-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 422 GVAFTKHLIQLYSYAGS-NDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~-~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
.++..++.+.||+..++ +... ....++...+.|+++. +|..--..++.|+.+|.+.+|+ .+++.++++.++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999885 2211 1111222223376664 4543222689999999999999 99999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
++.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||..+++.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 99877644 58999999999999999999999999988889999999999998877664 36889999999999988
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEeeccCCCCCCCCeeEEe-cCCCEEEEEEcCCcEEE
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~d~~i~i 655 (1101)
.....+...+....|.|....+++++.|+.+++|=..+ |.+.......+|..+..++.|. .+|.++.+++.|++++.
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~ 361 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS 361 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence 88755544788899999999999999999988885553 4222222223445578899998 68999999999999998
Q ss_pred EEccccccccccccC-CCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 656 LANAIGLRSLRAVEN-PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
+++..... -+.+.. +.. ...+.+ +. .....
T Consensus 362 fs~~~e~~-~~~l~~~~~~-------------~~~kk~------------------------------~~-----~~~~~ 392 (910)
T KOG1539|consen 362 FSVISESQ-SQELGQLHNK-------------KRAKKV------------------------------NV-----FSTEK 392 (910)
T ss_pred hhhhHHHH-hHhhcccccc-------------cccccc------------------------------cc-----cchhh
Confidence 88754411 111100 000 000000 00 00001
Q ss_pred CCcccEEEEEeecCc----ccEEEee-cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 735 DTSSKVVRLLYTNSA----VGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~----~~l~~~~-~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
....+|..+++...- ..++++. .+...+.|++.... .|...-...........+++
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-------------------~G~~~L~~~~~~~~~~~~~a 453 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-------------------SGRHVLDPKRFKKDDINATA 453 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-------------------cccEEecCccccccCcceEE
Confidence 122344444443321 1234443 45677788765321 11100000000014467899
Q ss_pred EEecCCCCeEEEEc-CCeEEEEECCCceEEEEe---eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 810 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
++.++.|.+.+.|+ .|.|.+|++++|-....+ ..|.++|+.++... -++.+++++.+|-+++||..+..++..++
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec
Confidence 99999999999997 899999999999999998 58999999999987 78899999999999999999988877776
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEc
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDA 964 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~ 964 (1101)
-...+.++..+.....++.+..|-.|+++|+.+.+.. +.+.||. ..+++++|||||++|++++ |++|++||+
T Consensus 533 -l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-----R~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 -LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-----REFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred -cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-----HHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 3456888999988889999999999999999986643 3455665 8999999999999999965 999999999
Q ss_pred CCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCC
Q 001319 965 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-GNIGVFDADTL 1012 (1101)
Q Consensus 965 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g~i~vwd~~~~ 1012 (1101)
.++.++..+.. ..+++++.|||+|.+|||...| .-|++|.-.+.
T Consensus 606 pt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 606 PTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred cCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 99999998877 7899999999999999999988 67999976653
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-35 Score=308.13 Aligned_cols=463 Identities=16% Similarity=0.225 Sum_probs=354.6
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+..+...|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|++..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55589999999999999999999999999999999988877 5666788999999998877 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC-CeeeeccCCCCceEEEEEcc-CCCEEEEeec
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 558 (1101)
.+++.+..|..|.+.|.+++.+|.. .+++++|.|-+|++||.+.. .+..++.+|.+.|++++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999964 79999999999999999875 45678999999999999999 5678888886
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC--CCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
|++|++|.+.+..+..++.+|.. .|+++.+-+. ..++++|+.|.+++|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 8999999774 47999999999999999999999999998765 799999
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|.-..+++|+.||+++||+..+- +....+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tL------------------------------------------------ 265 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTL------------------------------------------------ 265 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhh------------------------------------------------
Confidence 9999999999999999999987654 111111
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
......+.+++..+.+..++.|.++|.+.+=
T Consensus 266 -----------------n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-------------------------------- 296 (794)
T KOG0276|consen 266 -----------------NYGLERVWCIAAHKGDGKIAVGFDEGSVTVK-------------------------------- 296 (794)
T ss_pred -----------------hcCCceEEEEeecCCCCeEEEeccCCcEEEE--------------------------------
Confidence 1134566777777777777777777766541
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEcC--CeEEEE------ECCCceEEEE----eeCCCCCeeEEEEecCCCCEEEEE
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSATG--GKISLF------NMMTFKVMTT----FMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~d--g~i~vw------d~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
.......+.+++.|+.+-+... -.+.+- ++..|+++.. +....--...++-+| +|++++++
T Consensus 297 ------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc 369 (794)
T KOG0276|consen 297 ------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC 369 (794)
T ss_pred ------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEe
Confidence 1112223444555544433221 111111 2333433221 111111234578888 88887665
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEE
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 944 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 944 (1101)
.||.-.||..-. --..+.+.-....|++|.+..++--.++.|+++ ..++..+..... .....
T Consensus 370 -gdGEyiIyTala-----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~----------~~~e~ 431 (794)
T KOG0276|consen 370 -GDGEYIIYTALA-----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPD----------MSAEG 431 (794)
T ss_pred -cCccEEEEEeee-----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccc----------cceee
Confidence 589888886322 112355667889999998888988889999998 554443333211 11223
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 945 NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 945 s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
--.|.+|.+.+++.+++||.+++..++.+... ...+.|+.+|.+++.++.|. .+|+.
T Consensus 432 i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 432 IFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEEEecCc-eeEEE
Confidence 33566777788999999999999999998654 46789999999988887554 44443
No 27
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-35 Score=317.36 Aligned_cols=501 Identities=15% Similarity=0.257 Sum_probs=351.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
.+..|..++|+|.... +.++-..|.|++||+.-+.++.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999885 56778999999999998888763 889999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+.|-.|+||+.++.+++. ++.||-+.|+.+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999998877 7889999999999999988 899999999999999 99999999999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+|.. ..++++|.|.+||+||+........-.+ ++.=...+..+ ..-++-....-....+.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~-----------~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG-----------NSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc-----------chhhcCCcCeeeeeeec
Confidence 99976 5899999999999999865433322111 00000011110 00111111222345678
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
||.. .|+-++|+|.-..+++|+.|+.|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+...
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 8877 789999999999999999999999999987766555556677889999999999999999999999999999766
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
..+++++. .....+
T Consensus 283 -t~v~tfrr-----------------------------------------------------------------endRFW 296 (1202)
T KOG0292|consen 283 -TSVQTFRR-----------------------------------------------------------------ENDRFW 296 (1202)
T ss_pred -cceeeeec-----------------------------------------------------------------cCCeEE
Confidence 33333321 345567
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
.++.+|..+ +++++.|+.+.++.+++ +.++.++ + +..|..
T Consensus 297 ~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erpa~~v--~--~n~LfY 336 (1202)
T KOG0292|consen 297 ILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERPAYAV--N--GNGLFY 336 (1202)
T ss_pred EEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCceEEE--c--CCEEEE
Confidence 788888888 45555555566666542 2333333 2 334444
Q ss_pred EcCCeEEEEECCCceEE--EEeeCC---CCCeeEEEEecCCCCEEEEEeCC-CcEEEEEeecceEEE-e-ecc-CCCCee
Q 001319 822 ATGGKISLFNMMTFKVM--TTFMSP---PPASTFLAFHPQDNNIIAIGTED-STIHIYNVRVDEVKS-K-LKG-HQKRIT 892 (1101)
Q Consensus 822 ~~dg~i~vwd~~~~~~~--~~~~~~---~~~i~~l~~s~~~~~~la~g~~d-g~v~iwd~~~~~~~~-~-~~~-h~~~V~ 892 (1101)
..+..|+-+|+.+.+-. ..++.. ..+..++.+.|..+..|++...| |.-.++.+....... . -.. ......
T Consensus 337 vkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~ 416 (1202)
T KOG0292|consen 337 VKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEG 416 (1202)
T ss_pred EccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCc
Confidence 45888999999875543 333332 35788999999555555554444 444555554321110 0 000 111223
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeE
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~ 972 (1101)
++-.. .+++.+---.+.++.+=++....... .... .....+-+-.+|.+| ..+...|.+||+...+.+..
T Consensus 417 a~fva-rNrfavl~k~~~~v~ik~l~N~vtkk-l~~~-------~~~~~IF~ag~g~ll-l~~~~~v~lfdvQq~~~~~s 486 (1202)
T KOG0292|consen 417 ALFVA-RNRFAVLDKSNEQVVIKNLKNKVTKK-LLLP-------ESTDDIFYAGTGNLL-LRSPDSVTLFDVQQKKKVGS 486 (1202)
T ss_pred eEEEE-ecceEEEEecCcceEEecccchhhhc-ccCc-------ccccceeeccCccEE-EEcCCeEEEEEeecceEEEE
Confidence 33333 22333333335566666665532211 1111 233445555555544 44567899999999988888
Q ss_pred eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 973 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 973 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
+. -..|..+.||+|..+++.-+ -.+|.|.+.+
T Consensus 487 i~-----~s~vkyvvws~dm~~vAll~-Kh~i~i~~kk 518 (1202)
T KOG0292|consen 487 IK-----VSKVKYVVWSNDMSRVALLS-KHTITIADKK 518 (1202)
T ss_pred Ee-----cCceeEEEEcCccchhhhcc-cceEEEEecc
Confidence 87 46799999999998877655 3456666643
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.3e-37 Score=289.82 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=258.9
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
++++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..+||+|.|+ +++.|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 3589999999999999999999999999999999998876554 4556778999999999999 8999999999999
Q ss_pred EE-cCC------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCC
Q 001319 480 WE-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1101)
Q Consensus 480 wd-~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~ 551 (1101)
|+ .+. +..+.+.+|++.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99 322 34567899999999999975 3 4788999999999999999999999999999999999999 999
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
.+++|+. |...++||++.+.++++|.+|.. .|+.++|.|+|.-+++|++|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999987 88999999999999999999998 899999999999999999999999999999999999987777789
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
|++++||..|++|++|..|.++.+||.-.+ +..-.+
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------------------------------------------- 311 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------------------------------------------- 311 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------------------------------------
Confidence 999999999999999999999999997655 111111
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|.+.|.++..+|||..+.+++-|..+++|.
T Consensus 312 ----------------------~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 ----------------------AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----------------------eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 35999999999999999999999999999993
No 29
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=286.79 Aligned_cols=496 Identities=18% Similarity=0.249 Sum_probs=371.4
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCC--------eEEEEeecCCcccccceeeecccCcEEEEEEecCC--CceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKH--------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN--KLLCVVT 470 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~--------~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~--~~~~l~s 470 (1101)
.+.||+..|.|++.+||.-.+|+|-.-| .|++||..+-..+. .+......|.|++|++-+ ..+..+-
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEec
Confidence 3789999999999999999999874444 49999977744343 555667789999999853 3223333
Q ss_pred ecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee---ccC-CCCceEEEE
Q 001319 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDA-PGHWCTTML 545 (1101)
Q Consensus 471 ~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~-~~~~v~~~~ 545 (1101)
-+.+..+-+|| ..+......+..+..|....|+|... +++++. ..+.+.+|+.+.+..... +.. ....|.|++
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-NLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC-cEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 55667889999 88887777777788899999999754 455554 478999999887765432 222 235799999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
|.++|..+-. |.+|.|.||+..+.+..+....|.+ .|.+++.-.+|. |++|+.|+.|..|| ...+.+...+.
T Consensus 254 F~engdviTg-----DS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~el 325 (626)
T KOG2106|consen 254 FLENGDVITG-----DSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETEL 325 (626)
T ss_pred EcCCCCEEee-----cCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccC
Confidence 9999986643 2489999999999888888777766 899999988875 55699999999999 56666666776
Q ss_pred CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
+...+.|..++-...+ |++|...+.|..=.++++.....
T Consensus 326 Pe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v--------------------------------------- 364 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTV--------------------------------------- 364 (626)
T ss_pred chhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEE---------------------------------------
Confidence 6666677777644322 77777666665444433311000
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 785 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~ 785 (1101)
.+|......++.+|+...+++++.|+.+++|+-.. ..
T Consensus 365 ----------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~ 401 (626)
T KOG2106|consen 365 ----------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LE 401 (626)
T ss_pred ----------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------ee
Confidence 33777888999999999999999999999997110 11
Q ss_pred cccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 786 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
|.. ...+++.|+.|.|.| .+|.|. .|...|.|.++...+..-.. ..+++++.|+| +|.+||+|
T Consensus 402 wt~-------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvg 465 (626)
T KOG2106|consen 402 WTK-------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVG 465 (626)
T ss_pred EEE-------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEe
Confidence 211 156788999999999 888888 89999999999655554444 88999999999 99999999
Q ss_pred eCCCcEEEEEeecce-EEEee-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc------------eEEee
Q 001319 865 TEDSTIHIYNVRVDE-VKSKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS------------VTIHI 930 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~-~~~~~-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~------------~~~~~ 930 (1101)
+.|+.|+||.+..+. ...+. +.|..+|+.+.||+|+++|.+-+.|-.|..|.-..-+.... .-+..
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 999999999998543 22222 23448999999999999999999999999994332221111 11222
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
..+.....+..++-+...+.+++++ .|+|++|...--+....+....+|++.|++++|+.+..++++.+.|.+|..|++
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 2233335677777788889999987 689999987755554444444567999999999999999998889999999986
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-36 Score=295.73 Aligned_cols=287 Identities=20% Similarity=0.333 Sum_probs=263.1
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
..+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+.+. .++||++.|..++|+..
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDAS 161 (406)
T ss_pred hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEecC
Confidence 34556999999999999976 78999999999999999999865 39999999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
|++||+++.|-.+++||.++- .+....+.+|...|.+++|-|-|. +++|++.|.+|+.|+ .+|.++.++.+|...
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred ccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchHh
Confidence 999999999999999999873 333336789999999999999998 899999999999999 999999999999999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC---------------CCEEEEeecCCC
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCGTSKD 561 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d---------------~~~l~~~~~~~~ 561 (1101)
|..+..+. ||.++++++.|.++++|-+.+..+...+..|.++|.+++|.|. +.++.+++.
T Consensus 238 vr~v~v~~--DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr--- 312 (406)
T KOG0295|consen 238 VRMVRVNQ--DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR--- 312 (406)
T ss_pred EEEEEecC--CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc---
Confidence 99998755 8899999999999999999999999999999999999999774 246677664
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
|++|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..+.+ -|+++.|+.+.
T Consensus 313 -DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~ 388 (406)
T KOG0295|consen 313 -DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTA 388 (406)
T ss_pred -cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCC
Confidence 99999999999999999999988 899999999999999999999999999999999999998877 68999999999
Q ss_pred CEEEEEEcCCcEEEEE
Q 001319 642 NLLAVTTADNGFKILA 657 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd 657 (1101)
.++++|+-|.++++|.
T Consensus 389 p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceEEeccccceeeeee
Confidence 9999999999999996
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=279.08 Aligned_cols=292 Identities=17% Similarity=0.284 Sum_probs=244.3
Q ss_pred eEEEecccCCcceEEEEEeCC-CCEEEEEeCCCcEEEEECCC-----CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 576 IKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
...++++|.+ .|..++..+. ...+++++.|.++.+|++.. |..++.+.+|.| .|..++.++||++.++++.
T Consensus 7 l~~tl~gh~d-~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 7 LRGTLEGHTD-WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eeeeecCCCc-eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--EecceEEccCCceEEeccc
Confidence 4456788887 7888888886 46777899999999998764 667788888777 7999999999999999999
Q ss_pred CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEE
Q 001319 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVT 729 (1101)
Q Consensus 650 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 729 (1101)
|+++++||+.++ +..+.+.
T Consensus 84 D~~lrlWDl~~g-~~t~~f~------------------------------------------------------------ 102 (315)
T KOG0279|consen 84 DGTLRLWDLATG-ESTRRFV------------------------------------------------------------ 102 (315)
T ss_pred cceEEEEEecCC-cEEEEEE------------------------------------------------------------
Confidence 999999999876 2211111
Q ss_pred cCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 730 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 730 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
+|...|.+
T Consensus 103 ------------------------------------------------------------------------GH~~dVls 110 (315)
T KOG0279|consen 103 ------------------------------------------------------------------------GHTKDVLS 110 (315)
T ss_pred ------------------------------------------------------------------------ecCCceEE
Confidence 27888999
Q ss_pred EEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCC--CCCeeEEEEecCC-CCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 810 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQD-NNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~-~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
++|++|.+.+++|+ |.+|++|++... +..++..+ .+.|+|+.|+|.. ..+|++++.|++|++||+.+.+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 99999999999998 889999998654 44444433 6789999999932 7899999999999999999999999999
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
||++.++.+++||||..+++|+.||.+.+||+..++....+... ..|.+++|+|..-.|+.+.+..|+|||++
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-------~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-------DIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-------CeEeeEEecCCceeEeeccCCceEEEecc
Confidence 99999999999999999999999999999999998764333221 78999999999999999998999999999
Q ss_pred CceeeeEeccCCC------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 966 KMERIRQWTPQDA------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 966 ~~~~~~~~~~~~~------h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
++..+..+..... ......+++||+||+.|++|..|+.|++|.+..
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9998877765321 133467889999999999999999999998753
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.9e-35 Score=272.04 Aligned_cols=281 Identities=16% Similarity=0.255 Sum_probs=236.6
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~ 437 (1101)
-+||+++.|.+||+|...+|.+... +......|..+...||+++||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 4789999999999999999998763 55567899999999999999999765 599999999
Q ss_pred CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEecc
Q 001319 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1101)
Q Consensus 438 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~ 516 (1101)
++.- +..++.+|...|+++.|..||+ ++++||+||+++||| ..-.+.+. ..|..+|+++..+|. ..-|+++..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpn--QteLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPN--QTELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCC--cceEEeecC
Confidence 8764 5558999999999999999999 899999999999999 55444444 447899999999884 468999999
Q ss_pred CCeEEEEecCCCCeeeeccCC-CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC------eeEEEecccCCcceE
Q 001319 517 DGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNG 589 (1101)
Q Consensus 517 d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~v~ 589 (1101)
+|.|++||+....+...+... ...|.++...|||.+++.+.. .|..++|++-++ +++.+++.|.. -+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il 219 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HIL 219 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEE
Confidence 999999999988666554433 458999999999999998864 889999998754 35566777777 677
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCC-eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccc
Q 001319 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 668 (1101)
.+.++|++++|++++.|.+++||+.++. +....+. ++...+..++||.||++|++|+.|+.+++|++..+ +.++..
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy 296 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQY 296 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeec
Confidence 7889999999999999999999999987 3334444 45568999999999999999999999999999988 555555
Q ss_pred cCCC
Q 001319 669 ENPP 672 (1101)
Q Consensus 669 ~~~~ 672 (1101)
.++.
T Consensus 297 ~gh~ 300 (311)
T KOG0315|consen 297 QGHH 300 (311)
T ss_pred CCcc
Confidence 5543
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=267.87 Aligned_cols=295 Identities=15% Similarity=0.225 Sum_probs=252.3
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe--eEEEecccCCc
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKK 586 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 586 (1101)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+.++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 6789999998865 6899999987
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 666 (1101)
.|..+.|..+|+++++|++||+++|||++.......+.. ..+|+++..+|+...|++|..+|.|++||+... .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 799999999999999999999999999999666555554 358999999999999999999999999999765 1111
Q ss_pred cccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee
Q 001319 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 746 (1101)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 746 (1101)
.+- |+ ....|.++...
T Consensus 161 ~li-------------------------------------------------------------Pe---~~~~i~sl~v~ 176 (311)
T KOG0315|consen 161 ELI-------------------------------------------------------------PE---DDTSIQSLTVM 176 (311)
T ss_pred ccC-------------------------------------------------------------CC---CCcceeeEEEc
Confidence 111 11 34578899999
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG 825 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg 825 (1101)
|||..++++...|...+|++...... +.......+. .|.+.+..+.+|||+++||+++ |.
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~-----------------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTA-----------------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCcc-----------------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCc
Confidence 99999999999999999997652211 1111111122 3899999999999999999998 89
Q ss_pred eEEEEECCCc-eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 826 KISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 826 ~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
+++||+.++. +....+.+|...+...+||. |+.+|++|+.|+.+++|++..++.++...+|-....|++..
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999988 77778889999999999999 99999999999999999999999999999999988888764
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.2e-34 Score=281.18 Aligned_cols=338 Identities=17% Similarity=0.257 Sum_probs=288.0
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+..|++.|.+++.+|+.+ +++||+.|....+|+ .+|..+..+.+|...|+++.|+. +|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 5789999999999999777 899999999999999 89999999999999999999987 779999999999999999
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
..++.....+......+.-+.|+|.+..|+.|+. ||.+++|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999999878888999999999999999986 99999999999999999999877 888899999999999999
Q ss_pred CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
.||+|++|+..++.++..+....+ ....++.++..+..++.|+.++.+.+-+..++. .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999988875543 356899999999999999999998887665551 1100000
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
.+..+.....
T Consensus 274 ---------------------------------------------------------------~~~~l~~~~e------- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------TVPELKPSQE------- 283 (399)
T ss_pred ---------------------------------------------------------------CCccccccch-------
Confidence 0000000000
Q ss_pred EecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC
Q 001319 765 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 843 (1101)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 843 (1101)
.....|..+.++..-.+.|+|+ ||+|.|||+...+....+.
T Consensus 284 -------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~- 325 (399)
T KOG0296|consen 284 -------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE- 325 (399)
T ss_pred -------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-
Confidence 0233345556666777889998 9999999998877766655
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001319 844 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
|...|+.+.|-+ ..+|++++.||.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus 326 he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 326 HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 778899999986 5788899999999999999999999999999999999999999999999999999999874
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-34 Score=292.13 Aligned_cols=336 Identities=16% Similarity=0.302 Sum_probs=270.6
Q ss_pred cccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecC--Ccc-----cccceeeecc----cCcEEEEEEecCCCceEEE
Q 001319 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAG--SND-----LRQHSQIDAH----VGAVNDLAFAYPNKLLCVV 469 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~--~~~-----~~~~~~l~~h----~~~V~~l~~s~d~~~~~l~ 469 (1101)
+. |+.+|.+.+|+|-.. .+|+|+.|-+.++|++.. ..+ ++....+.++ ...|++++|+.+|. .||
T Consensus 175 l~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~La 251 (524)
T KOG0273|consen 175 LR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLA 251 (524)
T ss_pred cc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEE
Confidence 44 999999999999665 999999999999999974 111 1111111122 34799999999999 899
Q ss_pred EecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC
Q 001319 470 TCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 470 s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d 549 (1101)
+|+.||.+++|+.+|..+.++..|.++|.++.|+. .|.+|++++.|+++.+||..+++....+..+..+-..+.|-.+
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN 329 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence 99999999999999999999999999999999976 6689999999999999999888888888877776566777555
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
. .+++++. ++.|+++.+....++.++.+|++ .|.++.|+|.|..|++++.|++++||++........+..|..
T Consensus 330 ~-~F~ts~t----d~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk- 402 (524)
T KOG0273|consen 330 D-EFATSST----DGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK- 402 (524)
T ss_pred c-eEeecCC----CceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-
Confidence 4 4555554 89999999999999999999887 899999999999999999999999999998888888877654
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.|..+.|+|+|... |+..
T Consensus 403 -ei~t~~wsp~g~v~-----------~n~~-------------------------------------------------- 420 (524)
T KOG0273|consen 403 -EIYTIKWSPTGPVT-----------SNPN-------------------------------------------------- 420 (524)
T ss_pred -ceeeEeecCCCCcc-----------CCCc--------------------------------------------------
Confidence 78999999976310 0000
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccC
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 789 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1101)
.+..+++++.|++|++||+.
T Consensus 421 --------------------------------------~~~~l~sas~dstV~lwdv~---------------------- 440 (524)
T KOG0273|consen 421 --------------------------------------MNLMLASASFDSTVKLWDVE---------------------- 440 (524)
T ss_pred --------------------------------------CCceEEEeecCCeEEEEEcc----------------------
Confidence 01124444455555555432
Q ss_pred CccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 790 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 790 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
.|.++.... .|..+|.+++|||+|+++|+|+ ||.|.+|++++++..+.+.+ .+.|..++|+. +|.+|..+-.||
T Consensus 441 ~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 441 SGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA-AGDKLGACASDG 515 (524)
T ss_pred CCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC-CCCEEEEEecCC
Confidence 122221111 2999999999999999999999 99999999999999999986 56699999999 889998999999
Q ss_pred cEEEEEee
Q 001319 869 TIHIYNVR 876 (1101)
Q Consensus 869 ~v~iwd~~ 876 (1101)
.+++.|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99999874
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.2e-34 Score=278.75 Aligned_cols=329 Identities=15% Similarity=0.205 Sum_probs=282.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.|..|++.|.+++.+|+.+++|+|+.|....+|+..+|+... .+.+|.+.|+++.|+.||. +||||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 478899999999999999999999999999999999998555 7889999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ .++.....+.+.-..+.-+.|+|. +.+|+.|+.||.+.+|.+.+......+.+|..++++-.|.|||++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 888888888767778889999994 479999999999999999998888889999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc--------C-CCCC
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--------E-GGLP 630 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~-~~~~ 630 (1101)
+++|++||+.++.++.++.+..+....++.++..+..++.|..++.+++-+..+|+.+..... + ....
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 999999999999999999877666788899999999999999999999999999988877653 1 1112
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.|..+.++..-.+.|+|+-||+|.|||+.... ++.
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~------------------------------------------- 322 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRH------------------------------------------- 322 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--hhe-------------------------------------------
Confidence 33444455556677778888888888765330 000
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCC
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 790 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1101)
T Consensus 323 -------------------------------------------------------------------------------- 322 (399)
T KOG0296|consen 323 -------------------------------------------------------------------------------- 322 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCc
Q 001319 791 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 869 (1101)
Q Consensus 791 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 869 (1101)
.. .|...|..+.|-+ ..+|+++. +|+|+.||.++|+++.++.+|...|.+++++| +++++++++.|++
T Consensus 323 -------~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 323 -------IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNT 391 (399)
T ss_pred -------ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCe
Confidence 00 1777788888888 45565555 99999999999999999999999999999999 9999999999999
Q ss_pred EEEEEee
Q 001319 870 IHIYNVR 876 (1101)
Q Consensus 870 v~iwd~~ 876 (1101)
.+||+..
T Consensus 392 a~VF~v~ 398 (399)
T KOG0296|consen 392 ALVFEVP 398 (399)
T ss_pred EEEEecC
Confidence 9999864
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=281.99 Aligned_cols=293 Identities=18% Similarity=0.285 Sum_probs=260.5
Q ss_pred CcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
|-++.+.+. |.+.|.|+++.|-+. ++++|+.|++|.|||+.+|++.. ++.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeee
Confidence 334445554 999999999999876 67999999999999999998765 489999999999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
++|+-..||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++||| .+...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999998888 6789999999999999988 899999999999999 8888999999
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
||..+|..+.+.+.. ..+++|+.|++|++||+..++....+..|...+++++..|....+++++ ...|+-|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccC
Confidence 999999999987653 4789999999999999999999999999999999999999999999987 446999999
Q ss_pred CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec---cCC---CCCCCCeeEEecCCCEEE
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEG---GLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~g~~l~ 645 (1101)
..|..+..+.+|.. .+.+++.+.|+ ++++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999999887 88889998875 88999999999999999987655442 111 223578899999999999
Q ss_pred EEEcCCcEEEEEccc
Q 001319 646 VTTADNGFKILANAI 660 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~ 660 (1101)
+|..|.+|++|.-..
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997543
No 38
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=263.61 Aligned_cols=287 Identities=19% Similarity=0.325 Sum_probs=234.6
Q ss_pred eecCCCcEEEEEEecC-CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 340 SLHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspd-g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
+-+|++.|+.+||+|- |. +||+|+.|+.|+||+...+..... ...+-.+|+..|.++||+|.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHG 73 (312)
T ss_pred ecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCC
Confidence 3459999999999999 76 889999999999999875332211 112245799999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---ceeEEeecCC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHE 494 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~~~~~~~~h~ 494 (1101)
++||+|+.|.++.||.-..++ ......+.||...|.+++|+++|. +||+|++|++|-||. ..+ .++..+.+|.
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 999999999999999987654 334558999999999999999999 899999999999999 433 4678899999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCC---CCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..|..+.|+|.. .+|++++.|.+|++|+-.. -.+..++.++...|.+++|.+.|..|++++. |++++||-.
T Consensus 151 qDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~ 224 (312)
T KOG0645|consen 151 QDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRL 224 (312)
T ss_pred ccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeee
Confidence 999999999976 5999999999999997663 2457788888889999999999999999985 999999975
Q ss_pred CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe------eeEeeccCCCCCCCCeeEEecC-CCEE
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNLL 644 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~-g~~l 644 (1101)
. ..+.+.+...+..++|. ...|++++.|+.|++|.-...- .+.. ....|...|++++|+|. .++|
T Consensus 225 ~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 225 Y-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred c-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCce
Confidence 4 23444444478888898 4589999999999999765421 1111 12233448999999994 7899
Q ss_pred EEEEcCCcEEEEEcc
Q 001319 645 AVTTADNGFKILANA 659 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~ 659 (1101)
+++++||.+++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999864
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4e-31 Score=269.36 Aligned_cols=524 Identities=13% Similarity=0.174 Sum_probs=378.1
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--------eEEEEE-
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--------LIKVWE- 481 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--------~v~iwd- 481 (1101)
.+-+-|.|..+.... +.+.+++++..... -+.+|...|.|++.+||-- .+++|-.-| .|++||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 455667777665432 34667777552211 3669999999999999876 566655444 599999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEec--cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEEEeec
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~ 558 (1101)
.+-..++.+......|.+++|++...|.++.... .+..+.+||...+.........+..|....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 8888888888777889999999988777776653 456789999988877777777777889999999665 455554
Q ss_pred CCCCCceEEEEeCCCCeeEE---EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 559 SKDGDSFLVEWNESEGTIKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
.+.+.+|+.+.+.+.+ .|..+....+.+++|.++| -+++|..+|.|.||+..+.+..+....| ...|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeec--CCceEEE
Confidence 8899999999886554 4566666679999999987 5789999999999999887777666544 4589999
Q ss_pred EEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1101)
..-.+|.+|- |+.|+.|..||-. .+..+..+
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~~--y~k~r~~e---------------------------------------------- 324 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDDN--YRKLRETE---------------------------------------------- 324 (626)
T ss_pred EEecCccEee-cCccceEEecccc--cccccccc----------------------------------------------
Confidence 9999997666 9999999999922 12221111
Q ss_pred EEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 716 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
+|+ ..+.|..++-.. +. |+.+...+.|..=.+ +++..+.
T Consensus 325 --------------lPe---~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~----------------------~~~f~~~ 363 (626)
T KOG2106|consen 325 --------------LPE---QFGPIRTVAEGK-GD-ILVGTTRNFILQGTL----------------------ENGFTLT 363 (626)
T ss_pred --------------Cch---hcCCeeEEecCC-Cc-EEEeeccceEEEeee----------------------cCCceEE
Confidence 111 222222222211 11 444444433332221 1122111
Q ss_pred eccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 796 NDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
. .+|.+....++..|+...+++++ |+.+++|+ ..++..+.. -..++.|+.|+| .+ .+|.|+..|...+.|
T Consensus 364 v----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 364 V----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLD 434 (626)
T ss_pred E----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEe
Confidence 1 14888999999999999998888 99999999 445544433 356889999999 67 999999999999999
Q ss_pred eecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-
Q 001319 875 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV- 953 (1101)
Q Consensus 875 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~- 953 (1101)
.++..++..-.. ..++++++|+|+|.+||.|+.|+.|.+|.++.........-.. .+ ..++.+.||+|++++.+
T Consensus 435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-~g---s~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-SG---SPITHLDWSSDSQFLVSN 509 (626)
T ss_pred cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-cC---ceeEEeeecCCCceEEec
Confidence 999777665555 8899999999999999999999999999998766443332221 12 78999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeE--------------e-ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 001319 954 VHETQLAIYDASKMERIRQ--------------W-TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 954 ~~d~~i~v~d~~~~~~~~~--------------~-~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1018 (1101)
+.|-.|-.|....-+.+.. + .....+...|..++-|.+.+++++|...|.|++|...--+..+-.
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 5588999995433222211 1 111234667788888899999999999999999998755443322
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
. .+.+|+. .+++++|.- +...|.+.+.|..|..|++
T Consensus 590 h-------e~~ghs~--~vt~V~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 590 H-------EYGGHSS--HVTNVAFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred e-------eeccccc--eeEEEEEee-CCceEEecCCCceEEEEEe
Confidence 1 1222444 567999998 4566666669999999986
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.2e-34 Score=271.52 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=248.6
Q ss_pred ceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
......+|+++|..+.|+|+|. ++|+|+.|..|.+|++..... ...++++|.++|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeec
Confidence 3445668999999999999998 579999999999999754322 112478999999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
+|+..|++++.|.+|+.||+++|++.+ .+++|..-|+++.-+.-|.. ++.|++.|+++++|| .+..+++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999888 67899999999996655665 789999999999999 6666666664 45
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE- 573 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~- 573 (1101)
-++++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+.+. +.++++||.+.
T Consensus 175 yqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~ 248 (338)
T KOG0265|consen 175 YQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPF 248 (338)
T ss_pred eeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEeccc
Confidence 5789999865 4568999999999999999999999999999999999999999999999886 99999999874
Q ss_pred ---CeeEEEecccCCc---ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 574 ---GTIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 574 ---~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
.+++..+.++... ..-.++|+|++..+-+|+.|..+++||......+..++++. ..|++++|+|...+|.++
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSC 326 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEe
Confidence 4557778776431 23347899999999999999999999999888888887664 489999999999999999
Q ss_pred EcCCcEEEE
Q 001319 648 TADNGFKIL 656 (1101)
Q Consensus 648 ~~d~~i~iw 656 (1101)
+.|.+|++=
T Consensus 327 ~sdk~i~lg 335 (338)
T KOG0265|consen 327 SSDKTIYLG 335 (338)
T ss_pred ccCceeEee
Confidence 999998873
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=291.54 Aligned_cols=282 Identities=22% Similarity=0.330 Sum_probs=247.8
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
+..|..|.|.|+|++| ++|+..|.+.+|+..+-. | ..++..|..+|.++.||++|.++++
T Consensus 96 kc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCcee-EeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEEE
Confidence 4589999999999975 799999999999963311 1 1257889999999999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|.+. .+++|++||+|+||| ...+.-..+.||.-.|.++.
T Consensus 156 gD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred cCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 9999999999987543 22 2444 448999999999888 799999999999999 88888888999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+++++
T Consensus 230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhh
Confidence 99965 69999999999999999999999999999999999999999999999986 8899999999999999999
Q ss_pred ccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 582 GFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+.+..+. ..+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 304 ~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 304 GHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9988 89999999954 566678999999999998666665554 3456689999999999999999999999999754
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-31 Score=288.53 Aligned_cols=475 Identities=15% Similarity=0.207 Sum_probs=330.7
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+......|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|+.++|+|++. +++||++|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467789999999999999999999999999999998887 6789999999999999999 999999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+.+|+.++.||-+.|..+.|++.- .+|+++|.|.+|+||+..+.+++..+.+|.+.|+|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999843 69999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
|.+|++||+..-+....-.+.-... + .+... ..-++--...-....++ +|...|+-++|+|.
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~---~----~~~~~-------~~dLfg~~DaVVK~VLE--GHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQ---M----RGQQG-------NSDLFGQTDAVVKHVLE--GHDRGVNWAAFHPT 217 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhh---h----hcccc-------chhhcCCcCeeeeeeec--ccccccceEEecCC
Confidence 8999999987543322222200000 0 01110 00011111111223344 44558999999999
Q ss_pred CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
-.++++|++|..|++|..... + .|++
T Consensus 218 lpliVSG~DDRqVKlWrmnet-K----------------------------------------------------aWEv- 243 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET-K----------------------------------------------------AWEV- 243 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-c----------------------------------------------------ceee-
Confidence 999999999999999987543 1 1111
Q ss_pred eCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCC
Q 001319 721 DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1101)
....+|.+.|.++.|+|....+++.+.|+.+++||+..... +....
T Consensus 244 ----------DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----------------------v~tfr-- 289 (1202)
T KOG0292|consen 244 ----------DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----------------------VQTFR-- 289 (1202)
T ss_pred ----------hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc----------------------eeeee--
Confidence 11266999999999999999999999999999999764311 11000
Q ss_pred CCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 801 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 801 ~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
...+..+.++..|...++|+|.|+.+.||.++.-.+ +.+.+ + ..|...- |..|+-+|+.+.+-
T Consensus 290 -rendRFW~laahP~lNLfAAgHDsGm~VFkleRErp------------a~~v~--~-n~LfYvk-d~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 290 -RENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP------------AYAVN--G-NGLFYVK-DRFIRSYDLRTQKD 352 (1202)
T ss_pred -ccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc------------eEEEc--C-CEEEEEc-cceEEeeecccccc
Confidence 156778999999999999999998888887753222 22332 2 3344443 88999999988543
Q ss_pred --EEeeccC---CCCeeEEEEcCCCCEEEEE-e-CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 881 --KSKLKGH---QKRITGLAFSTSLNILVSS-G-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 881 --~~~~~~h---~~~V~~l~~s~d~~~l~s~-s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
+..++.. -.++.++.++|..+.+..+ . ..|.-.++.+.......... ..... +.-....|-..+++.+.
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~---~~~~k-~tG~~a~fvarNrfavl 428 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG---KDVKK-GTGEGALFVARNRFAVL 428 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc---hhhhc-CCCCceEEEEecceEEE
Confidence 3344432 3678999999986644434 3 34555555554421111000 00000 11112223333333222
Q ss_pred E-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 954 V-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 954 ~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
. ++..+.+-++.+.. .+.+.. ...+..+-+..+|.+|+.. ...|.+||++..+....+.
T Consensus 429 ~k~~~~v~ik~l~N~v-tkkl~~----~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 429 DKSNEQVVIKNLKNKV-TKKLLL----PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred EecCcceEEecccchh-hhcccC----cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe
Confidence 2 23444444443222 222221 2345667777777766543 3468999999988877776
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=256.02 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=247.9
Q ss_pred CCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
+|.+-..++. |.++|.++.|+-||+|. .+++.|.+|++|+...|.+++ ++.+|...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~-ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYC-LTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEE-EEcCCCceEEeecccccceee-------------------eecCCCceeee
Confidence 3443444455 89999999999999975 566799999999999998886 48899999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE---cCCceeE
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLF 488 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd---~~~~~~~ 488 (1101)
++.+.|...+|+|+.|..|.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| ..-++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999888 6889999999999999998 999999999999999 4557788
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
.+......|.++.+. +..|++|+.||++|.||++.+.....+ -+++|++++|++|++..+.++- ++++++
T Consensus 140 ildea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrL 209 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRL 209 (307)
T ss_pred hhhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeee
Confidence 888888899999874 367999999999999999887665443 4567999999999999998886 899999
Q ss_pred EeCCCCeeEEEecccCCcceE-EEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 569 WNESEGTIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
.|-++|+++..+.||.+.... ..+++....++++|++||.|++||+.....+..+..++. ..|.+++++|.-..++++
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEe
Confidence 999999999999999874432 356777778999999999999999999999998887654 247899999987777777
Q ss_pred EcCCcEEEEEc
Q 001319 648 TADNGFKILAN 658 (1101)
Q Consensus 648 ~~d~~i~iwd~ 658 (1101)
.. +.+..|.-
T Consensus 289 ~~-~~~~~~~~ 298 (307)
T KOG0316|consen 289 TG-HGDLFWYQ 298 (307)
T ss_pred cC-Cceeceee
Confidence 64 44555643
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=271.79 Aligned_cols=294 Identities=16% Similarity=0.276 Sum_probs=258.8
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+++.+|.++|.|+++.|-.+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 4689999999999999999999999999999999999998665 7889999999999999888 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| ...+.++.+.||-..|.+++.+|.- ..|++|+.|.++|+||+++......+.+|...|.++.+.|-...+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8889999999999999999999865 68999999999999999999999999999999999999999999999986
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+. .-|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeeec
Confidence 99999999999999999988876 89999999999888888877 68999999999988876654 468899988
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
.|| .+++|+++|.+.+||..++ ...+..+..
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg-~nyQ~~~t~----------------------------------------------- 400 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG-HNYQRGQTI----------------------------------------------- 400 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC-ccccccccc-----------------------------------------------
Confidence 777 7888999999999999988 222222110
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
..|+.......|...+|...|.+|+++..|.+|++|.-+
T Consensus 401 ----------vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 401 ----------VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ----------ccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 001112256778999999999999999999999999744
No 45
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=273.94 Aligned_cols=285 Identities=21% Similarity=0.294 Sum_probs=259.3
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|..+|+.+-|.|+-..+|+++.|++|++||..+|+..+ .++||.+.|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999999866 7899999999999999999 89999999999999
Q ss_pred E--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 481 d--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
| ..-+++..+.+|...|.+++|-|. |.++++++.|.+|+.|+++++-++.++.+|..+|..+..+.||..+++++.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 9 336788999999999999999885 479999999999999999999999999999999999999999999999985
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCeeeEee
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
+.+|++|-..++++...++.|.- .+.+++|-|. +.++.+++.|++|++||+.++.++.++
T Consensus 256 ----dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 256 ----DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ----CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 89999999999999999998876 8888888653 248889999999999999999999999
Q ss_pred ccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcce
Q 001319 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (1101)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 703 (1101)
.++.. .|..++|+|.|++|+++.+|+++++||+.+. .+...+..
T Consensus 331 ~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~a--------------------------------- 374 (406)
T KOG0295|consen 331 VGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEA--------------------------------- 374 (406)
T ss_pred ecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCC---------------------------------
Confidence 87765 8999999999999999999999999999887 45444432
Q ss_pred eccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 704 ERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
|..-++++.|..+..++++|+-|.++++|.
T Consensus 375 --------------------------------h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 375 --------------------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------------------------------CcceeEEEecCCCCceEEeccccceeeeee
Confidence 667788889999999999999999999996
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.4e-33 Score=312.61 Aligned_cols=285 Identities=22% Similarity=0.376 Sum_probs=251.3
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCc--eeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|...|.++.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4789999999999996 6889999999999997665 222 36889999999999999999
Q ss_pred EEEEECCCeEEEEee-cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
+++|+.|++|+|||+ ..+.+++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 78999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCC--ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
+++|.+ ++.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999977 67899999999999999999988 3455554444 4999999999999999985 889999999999
Q ss_pred eeEEEecccCCc--ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE--cC
Q 001319 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1101)
Q Consensus 575 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d 650 (1101)
.....+.+|... .+.....++.+.++++|+.|+.|++||+.++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 33345567889999999999999999999999888888774 55789999999999999998 78
Q ss_pred CcEEEEEcc
Q 001319 651 NGFKILANA 659 (1101)
Q Consensus 651 ~~i~iwd~~ 659 (1101)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 899999753
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-29 Score=267.11 Aligned_cols=548 Identities=13% Similarity=0.139 Sum_probs=387.6
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
...+|.++|||.+.+.||.+-.||.|.||++..+=.... .+.++. ..|.+++|++.++ |+|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 456899999999999999999999999999998643332 455554 5899999996665 89999999999999 9
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee--ccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+++....+....+.|++++.+|.. ..++.|+.||.+..++...+..... +....+.+.++.|.|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998854 6899999999887777776665543 3344568999999999999999986
Q ss_pred CCCceEEEEeCCCCeeEEEec-----cc--CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYA-----GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
||.|++||..++..+.... .. ....++++.|-.+ ..+++|..-|+|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988766211 11 2224666777655 5899999999999999999999998887754 799
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1101)
+++.++++.++++++.|+.|.-+...+........
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~--------------------------------------------- 284 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN--------------------------------------------- 284 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeee---------------------------------------------
Confidence 99999999999999999999888766552210000
Q ss_pred eEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 714 IILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 714 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
.....|...|.++++.++ .+++++.|+++.+-.....+. .+ ..
T Consensus 285 -----------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~- 327 (691)
T KOG2048|consen 285 -----------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HR- 327 (691)
T ss_pred -----------------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hh-
Confidence 000347888888888887 689999998887643321100 00 00
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceE---------EEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV---------MTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
+... ..... -+...+..++++.-.+..+.+|.+.+... ..........|.+.+.|| +|+++|.+
T Consensus 328 ~~~~----~p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~s 400 (691)
T KOG2048|consen 328 QKNL----FPASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIS 400 (691)
T ss_pred cccc----ccccc--eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEe
Confidence 0000 01111 13334555555555677788887765411 122223345699999999 99999887
Q ss_pred eCCCcEEEEEeecceEEE-----eeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 865 TEDSTIHIYNVRVDEVKS-----KLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
. -..++||.+.....+. ....-.-....+.|+-|+..++.++ .+..+.+.++++...+....+... . ....
T Consensus 401 t-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~-~~~~ 477 (691)
T KOG2048|consen 401 T-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A-KCPS 477 (691)
T ss_pred e-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c-CCCc
Confidence 6 4568888887532221 1122334577889999988888887 778888998888665554444332 2 2278
Q ss_pred cceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeE
Q 001319 939 DTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRLRC 1016 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~ 1016 (1101)
++.+..|++|.++|+ +..+.|.+|++++++........ ...|++++|+| +-..|+.+..++.+.-||++..++ .
T Consensus 478 I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~ 553 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-T 553 (691)
T ss_pred ceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---CcceeeeeccccccCcEEEEecCCeEEEEecchhhh-h
Confidence 999999999999999 56999999999998876555333 67899999995 556789999999999999954432 2
Q ss_pred eeCCCC--cCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1017 YIAPST--YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1017 ~~~~~~--~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
++.... .++.....-.+ .+..+.|+|.....++ .-..+-+.+.|..
T Consensus 554 ~ws~~nt~nlpk~~~~l~~--~~~gisfd~~n~s~~~-~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 554 RWSKNNTRNLPKEPKTLIP--GIPGISFDPKNSSRFI-VYDAHWSCLIDFS 601 (691)
T ss_pred hhhhccccccccChhhcCC--CCceEEeCCCCccEEE-EEcCcEEEEEecC
Confidence 221111 01111111112 2346777774333333 3334556666654
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.4e-34 Score=275.41 Aligned_cols=275 Identities=20% Similarity=0.287 Sum_probs=235.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
....|.|+.+..+ .+++|..|++|+|||.++.+++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 3568999999754 35899999999999998877664 59999999999998 567999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEeecCCcCeE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~~h~~~v~ 498 (1101)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999988 67899999999999843 799999999999999 3332 3467789999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+.|. .+++++++.|.+|++|++.+.+....+.+|...|.|+.+ .|+++++|+. |.+|++||++.|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99883 369999999999999999999999999999999988876 6888999886 9999999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe-------eccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS-------TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
.++||.. .+.++.|. .+.+++|+.||+|++||+..+..... .....+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999988 89999986 57999999999999999987643311 112233447888888 677899999999
Q ss_pred cEEEEEcccccc
Q 001319 652 GFKILANAIGLR 663 (1101)
Q Consensus 652 ~i~iwd~~~~~~ 663 (1101)
+|.|||..++..
T Consensus 470 tILiWdFl~~~~ 481 (499)
T KOG0281|consen 470 TILIWDFLNGPP 481 (499)
T ss_pred eEEEEEcCCCCc
Confidence 999999987743
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.4e-32 Score=258.23 Aligned_cols=287 Identities=18% Similarity=0.280 Sum_probs=246.2
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... ..+..+++|.+.|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 4588999999999999999999999999999999976533 23346889999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| .+|++++.+++|..-|+++..... +-.++.+++.|+++++||++..+....+. ..-.++++.|..++..+.+|+-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 99 999999999999999999985432 34678899999999999999877766553 3346899999999999999986
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC----CeeeEeeccCCCCC--CC
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLP--NL 632 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 632 (1101)
|+.|++||++.......+.||.+ .|..+..+++|.++.+-+.|.++++||++. .+++..+.++.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88899999999999999999998 899999999999999999999999999874 34466666554432 33
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
..++|+|+++.+..|+.|..+++||.... ..+.
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r-~~ly---------------------------------------------- 302 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR-RILY---------------------------------------------- 302 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc-cEEE----------------------------------------------
Confidence 57889999999999999999999997654 2221
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEE
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 763 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~ 763 (1101)
.+ .+|.+.|..+.|+|....|.+++.|.+|.+
T Consensus 303 ----------------kl---pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 303 ----------------KL---PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------Ec---CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 22 349999999999999999999999988865
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-32 Score=271.43 Aligned_cols=293 Identities=18% Similarity=0.344 Sum_probs=247.6
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+..+.+..|...|+-+.|++ +|++||+++.|.+..+|++..... ..++.+|..+|..+.||||.+++++|+.
T Consensus 215 qt~qil~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~--- 289 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF--- 289 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---
Confidence 34466778999999999977 789999999999999999876655 6678889999999999999999999997
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
+..+.+||..+|.....+....+..+.+++|.|||..+++|+.|+.+..||+.. ......+... ...|.+++.++||
T Consensus 290 -~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr-~~~v~dlait~Dg 366 (519)
T KOG0293|consen 290 -DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVR-DPKVHDLAITYDG 366 (519)
T ss_pred -hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccc-cceeEEEEEcCCC
Confidence 667999999999999988876666899999999999999999999999999864 3444443322 2468999999999
Q ss_pred CEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
+++++.+.|..|++++.++.... .
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr-~------------------------------------------------------- 390 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDR-G------------------------------------------------------- 390 (519)
T ss_pred cEEEEEecccceeeechhhhhhh-c-------------------------------------------------------
Confidence 99999999999999887644100 0
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1101)
++
T Consensus 391 ------------------------------li------------------------------------------------ 392 (519)
T KOG0293|consen 391 ------------------------------LI------------------------------------------------ 392 (519)
T ss_pred ------------------------------cc------------------------------------------------
Confidence 00
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCC--eeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
....+|+++++|.||+++.+.- +..+++||++..+.++.+.+|... +-.-||.-.+..++|+|++|+.|+||+..+|
T Consensus 393 se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 393 SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 1456788999999999888775 889999999999999999998765 5555776656689999999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 001319 879 EVKSKLKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~lwd~~~ 919 (1101)
+++.++.||...|++++|+|.. ..+||||+||+||||....
T Consensus 473 kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 473 KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999965 5899999999999998875
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-32 Score=295.83 Aligned_cols=246 Identities=19% Similarity=0.343 Sum_probs=226.7
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc--------cc--------------------ccceeeecccCcEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------DL--------------------RQHSQIDAHVGAVND 456 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~--------~~--------------------~~~~~l~~h~~~V~~ 456 (1101)
....++|+.||+|+..||.|..|..|++|.+...+ .+ ....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34589999999999999999999999999987421 00 112357899999999
Q ss_pred EEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 457 l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
+.|+|+.+ +|++|+.|++||+|. .+..++..++||..||+.+.|+| -|-+++|++.|++-++|..+.......+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 899999999999999 88889999999999999999987 57899999999999999999999999999
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+|-..|.|+.|+|+..|+++|+. |.++++||..+|..++.|.||.+ +|.+++|+|+|++|++|++||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999986 99999999999999999999988 89999999999999999999999999999
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++++..+..| ...|.++.|+.+|..||+|+.|.+|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999998877 458999999999999999999999999998755
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-31 Score=248.57 Aligned_cols=291 Identities=14% Similarity=0.283 Sum_probs=237.4
Q ss_pred ccccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCCcccccceee-ecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~l-~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 48899999999999998 899999999999999999865443322223 38999999999999999 899999999999
Q ss_pred EEE-cC--CceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC---eeeeccCCCCceEEEEEccCCCE
Q 001319 479 VWE-LS--GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 479 iwd-~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~d~~~ 552 (1101)
||. .. -+++.++.||...|.+++|+. +|.+|++++.|+.|-+|.+.... +...+..|.+.|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999 43 367899999999999999977 66899999999999999987543 44578889999999999999999
Q ss_pred EEEeecCCCCCceEEEEeCC---CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 553 LFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
|++++. |++|++|.-. .-.+++++.+|.. .+.+++|++.|..+++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999997 9999999866 3468999999988 8999999999999999999999999986522 11 1223
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
..+..++|. ...|++++.|+.|+++.-.... ...... .+
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~------d~p~~~----------------l~----------------- 272 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSP------DEPSWN----------------LL----------------- 272 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCC------CCchHH----------------HH-----------------
Confidence 467889997 4589999999999998754320 000000 00
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecC-cccEEEeecCCeEEEEEec
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~~w~~~ 767 (1101)
......|...|+++++.|. ..+|++++.||.+++|.+.
T Consensus 273 --------------------~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 --------------------AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------------------HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0001348889999999995 6789999999999999863
No 53
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=275.30 Aligned_cols=284 Identities=15% Similarity=0.253 Sum_probs=248.7
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
-...|..+.|.|+|+.|++|+..|.+.+|+..+-.... .+..|..+|+++.|+++|. +++||+.+|.|++|+.+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt---ilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET---ILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHH---HhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 34589999999999999999999999999985532111 4669999999999999999 899999999999999776
Q ss_pred ceeEEeecCC-cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 485 RKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 485 ~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+.+..+.+|. ..|.+++|+|. ...+++++.||+|+|||....+....+.+|+-.|.++.|+|....+++++. |
T Consensus 170 nnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 7777777665 89999999984 368999999999999999999998889999999999999999999999985 7
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCC
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~ 642 (1101)
..|++||.+++.++.++.+|.+ .|..+.|++++++|++++.|..++++|+++.+.+.++..|.. .|+++.|+| ...
T Consensus 244 nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeecccccccc
Confidence 7999999999999999999988 899999999999999999999999999998888888877654 799999999 667
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
+|.+|+.||.|..|.+... +.+..+
T Consensus 321 lftsgg~Dgsvvh~~v~~~-~p~~~i------------------------------------------------------ 345 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLE-EPLGEI------------------------------------------------------ 345 (464)
T ss_pred ceeeccCCCceEEEecccc-ccccCC------------------------------------------------------
Confidence 8999999999999988632 111110
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
..+|...|.+++|+|-|..|++++.|.++++|.-.
T Consensus 346 ----------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 346 ----------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ----------CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 04489999999999999999999999999999744
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-28 Score=260.37 Aligned_cols=503 Identities=14% Similarity=0.183 Sum_probs=358.0
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce-eEEeecCC-cCeEEEecccCCCccEEEEeccCCeEEEEecC
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~-~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~ 526 (1101)
-...|.++||+.+.+ .||.+-.||.|.+|+ ..+-. ...+.++. ..|.+++|.+ +..|++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEecc
Confidence 345799999999998 699999999999999 44433 34555554 4799999973 4589999999999999999
Q ss_pred CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC-cceEEEEEeCCCCEEEEEeC
Q 001319 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~ 605 (1101)
+.+....+...++.|.+++.+|.+..++.++. +|.+..++...++......-..+ ..+-+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 99999999999999999999999999999985 77888888888877655433322 47889999999999999999
Q ss_pred CCcEEEEECCCCeeeEeec-----cCC-CCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCc
Q 001319 606 DSQIKFWDMDNVNILTSTD-----AEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1101)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
||.|++||..++..+.... ... ...-|+++.|-.++ .|++|...|+|.+||...+ ...+..
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~----------- 241 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSH----------- 241 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhh-----------
Confidence 9999999999988777322 111 22235566666454 7899999999999998877 222222
Q ss_pred ceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCC
Q 001319 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 759 (1101)
Q Consensus 680 v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 759 (1101)
..|...|.+++..++++++++++-|+
T Consensus 242 ------------------------------------------------------~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 242 ------------------------------------------------------SCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred ------------------------------------------------------hhhhcceeEEEEcCCCCeEEEccCCC
Confidence 23788899999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEE
Q 001319 760 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM 838 (1101)
Q Consensus 760 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~ 838 (1101)
.+..+...+.... |... .....|...+.+++..++ .+++|+ |..+.+-.....+..
T Consensus 268 ~ii~~~~~~~~~~-------------wv~~--------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~ 324 (691)
T KOG2048|consen 268 KIIQYSLTTNKSE-------------WVIN--------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNM 324 (691)
T ss_pred ceEEEEecCCccc-------------eeee--------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCch
Confidence 9888775543210 2111 111248889999999877 666666 777766544331111
Q ss_pred EEeeCCCCCeeE-EEEecCCCCEEEEEeCCCcEEEEEeecce---------EEEeeccCCCCeeEEEEcCCCCEEEEEeC
Q 001319 839 TTFMSPPPASTF-LAFHPQDNNIIAIGTEDSTIHIYNVRVDE---------VKSKLKGHQKRITGLAFSTSLNILVSSGA 908 (1101)
Q Consensus 839 ~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~d~~~l~s~s~ 908 (1101)
.........-.+ +...| .++|..--.+..+.+|.+.+.. +.+....-...|.+.+.||+|++++.+.-
T Consensus 325 ~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~ 402 (691)
T KOG2048|consen 325 DHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV 402 (691)
T ss_pred hhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec
Confidence 111000011111 22233 3344444456678888876541 12222233466999999999999987764
Q ss_pred CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE--eCCeEEEEEcCCcee--eeEeccCCCCCCCEE
Q 001319 909 DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMER--IRQWTPQDALSAPIS 984 (1101)
Q Consensus 909 Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~ 984 (1101)
..+++|.++....++...+....... ...+.+.|+-|+..++.. +...+.+++.++... +..+... .-...|.
T Consensus 403 -~~~~iy~L~~~~~vk~~~v~~~~~~~-~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~ 479 (691)
T KOG2048|consen 403 -SRTKIYRLQPDPNVKVINVDDVPLAL-LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSIS 479 (691)
T ss_pred -cceEEEEeccCcceeEEEeccchhhh-ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCCCcce
Confidence 34788888764433222222111111 467788999888887774 467888888775543 2223222 2267899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 985 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.+..|+||+|||+.+.+|.|.+|++++++....... -...++.++|+|.....|+.+..|+.|.-+|+
T Consensus 480 ~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r------------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 480 RLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR------------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred eEEEcCCCCEEEEEeccceEEEEEcccceeecchhc------------cCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 999999999999999999999999999877655421 12466789999878889999999999999999
Q ss_pred CCCC
Q 001319 1065 SESE 1068 (1101)
Q Consensus 1065 ~~~~ 1068 (1101)
...+
T Consensus 548 ~~~~ 551 (691)
T KOG2048|consen 548 EARN 551 (691)
T ss_pred chhh
Confidence 4433
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=280.04 Aligned_cols=293 Identities=18% Similarity=0.285 Sum_probs=248.5
Q ss_pred CCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccEE
Q 001319 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1101)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 410 (1101)
+|..++.++. |...|+++.|.|-.-+||++|+.|+.|+||++-. +.+++ ++.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhh
Confidence 4667777766 9999999999994445899999999999999987 55554 5899999999
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
.++|+++|..+++++.|+.|++||+++|+++..+. -...++|+.|.||+.+ .+++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999999876432 2446899999999955 899999999999999 99999999
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
+..|-+.|..+.|.+ +|..+++.+.|+++++|+.+..-..... ....+...++..+|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999976 6789999999999999998877655433 333446789999999999998775 888999
Q ss_pred EeCCCC---eeEEEecccCCcc-eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC-CCE
Q 001319 569 WNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNL 643 (1101)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~ 643 (1101)
+.+... ...+.|.||.-.. -..+.|+|||.+|++|..||.+.+||.++-+++..+..+.. .+..+.|+|. ...
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 886532 3445677776433 33489999999999999999999999999999999887744 7899999994 568
Q ss_pred EEEEEcCCcEEEEE
Q 001319 644 LAVTTADNGFKILA 657 (1101)
Q Consensus 644 l~~~~~d~~i~iwd 657 (1101)
+|+++-||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=5.5e-30 Score=278.99 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=249.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+|.+.|++++|+|+++ ++++|+.||.|++|++.+++... .+..|...+..+.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5899999999999998 56888899999999998876433 266788899999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++|| .+++.+..+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5778999999999999987 788888899999999 6688888999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|.+||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99874 578888888999999999988887777788888999999999999998875 889999999999998888
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
..+.. .+..++|+|++.++++++.||.|++|++.+++....+..+ ...|.+++|+|+++.+++++.|+.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 7889999999888888888999999999998888887744 34799999999999999999999999995
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.1e-30 Score=293.45 Aligned_cols=287 Identities=22% Similarity=0.376 Sum_probs=249.9
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--c
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~ 482 (1101)
|...|.++.|||||+++++++.|+.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+||| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977762 22225689999999999999999 899999999999999 4
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
.+.+++++++|...|++++|++ +|+++++|+.|++|++||+++++....+..|...|++++|+++++++++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 4588999999999999999988 4589999999999999999999999999999999999999999999999975
Q ss_pred CceEEEEeCCCCe--eEEEecccCCc-ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-CCCCeeEEe
Q 001319 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (1101)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s 638 (1101)
|+.|++||+.++. +...+.++... .+..++|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 67888888775 6899999999999999999999999999999998888776543 234455567
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
+.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~------------------------------------------------ 419 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG------------------------------------------------ 419 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcC------------------------------------------------
Confidence 79999999999999999999875 33333332
Q ss_pred EEeCCCeEEEEcCCCCCC-cccEEEEEeecCcccEEEee--cCCeEEEEEe
Q 001319 719 IVDSGQCRLVTMPESTDT-SSKVVRLLYTNSAVGLLALG--SNGVQKLWKW 766 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~--~dg~v~~w~~ 766 (1101)
| ...+..+.+++....+++.+ .|+.+++|..
T Consensus 420 -----------------h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 -----------------HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -----------------CCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 4 56667788888888888887 6888999964
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.4e-31 Score=272.41 Aligned_cols=292 Identities=17% Similarity=0.309 Sum_probs=247.6
Q ss_pred ceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeE
Q 001319 444 HSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i 520 (1101)
...+.||+..|+++.|.| .+. +|++++.|+.|+||+ ..+++++++.+|..+|..++|+. +|..+++++.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~--~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN--CGTSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc--cCCeeeeeecceee
Confidence 346889999999999999 566 899999999999999 56999999999999999999976 67899999999999
Q ss_pred EEEecCCCCeeeeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCE
Q 001319 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1101)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1101)
++||.+++.+...+.. +..++++.|.||+ +.+++|+. ++.|+.||+++++.++.+..|-+ .+..+.|-++|.+
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce
Confidence 9999999999887763 4468999999999 66666665 89999999999999999988877 8999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCc
Q 001319 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
+++.++|+.++||+......+..+.... .-...++..+|++.+++.-+.|+.|.++.+....+.-+ ...
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk---kK~------- 425 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK---KKR------- 425 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCH---hhh-------
Confidence 9999999999999998877666553332 23678999999999999999999999987653311000 000
Q ss_pred ceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCC
Q 001319 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 759 (1101)
Q Consensus 680 v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 759 (1101)
T Consensus 426 -------------------------------------------------------------------------------- 425 (503)
T KOG0282|consen 426 -------------------------------------------------------------------------------- 425 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEE
Q 001319 760 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM 838 (1101)
Q Consensus 760 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~ 838 (1101)
+.++.-.+.-..+.|||||.+|++|+ +|.+.+||.++.+.+
T Consensus 426 --------------------------------------feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 426 --------------------------------------FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred --------------------------------------hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 00000223345689999999999998 999999999999999
Q ss_pred EEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 839 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 839 ~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
..+++|...+..+.|+|.....+|+++.||.|++|+
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999998889999999999999996
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=1.4e-31 Score=259.57 Aligned_cols=280 Identities=15% Similarity=0.293 Sum_probs=233.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...|+|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 347899988 56789999999999999999988777 688999999999994 55 899999999999999 999
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+++.++.+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999853 58999999999999999877643 4677888899999885 459999874
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
|.+|++|++.+++.++++.+|.. .+.++.+. ++++++|+.|.+|++||+..|.++..+++|.. -|.++.| |.
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 99999999999999999999987 67777664 78999999999999999999999999988765 7999999 67
Q ss_pred CEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
+.+++|..||+|++||+..+...-. ...
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra-~~~--------------------------------------------------- 438 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRA-PAS--------------------------------------------------- 438 (499)
T ss_pred ceeeeccccceEEEEecccccCCcc-ccc---------------------------------------------------
Confidence 7999999999999999987632110 000
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
.+.+.....|.+.|..+.|. ..++++++.|.+|.+||+....
T Consensus 439 -----~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 439 -----TLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred -----chHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 00000113377888888885 4559999999999999987543
No 60
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=6.7e-30 Score=266.56 Aligned_cols=619 Identities=18% Similarity=0.236 Sum_probs=352.3
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
.+-.|++.|+.+.|||-...|||+|+.|..|+||.+..|-... ..-+...+.+..-.|-++.|+|..
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpTa 140 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPTA 140 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccCc
Confidence 3445999999999999887799999999999999998543221 001222355566789999999977
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~ 496 (1101)
.-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+||| ..++.++...+|.+.
T Consensus 141 Dgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~ 215 (1012)
T KOG1445|consen 141 DGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGM 215 (1012)
T ss_pred CceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccc
Confidence 767777788999999999998766 7889999999999999999 899999999999999 788889998999874
Q ss_pred -eEEEecccCCCccEEEEeccC----CeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 497 -VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 497 -v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
-..+.|.. +-..|++.+.+ ..|++||.+..... .++.... .|.---|.||.++++.++. |+..+..
T Consensus 216 rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 216 RDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred hhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecC---CcceEEE
Confidence 23455533 43567777655 56899998764332 2332222 3555668899999998875 6778888
Q ss_pred EeCCCCeeEE--EecccCCcceEEEEEeCCCCEEEEEeC-CCcE------------------------------------
Q 001319 569 WNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQI------------------------------------ 609 (1101)
Q Consensus 569 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i------------------------------------ 609 (1101)
+.+...+... .+...-.......++.|....-+..++ +..+
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 8776543211 110000000000111111000000000 0000
Q ss_pred ---EEEECCCCeeeEeec------cCC----------------CCCCCCeeEEecCCCEEEEEEcCC-------------
Q 001319 610 ---KFWDMDNVNILTSTD------AEG----------------GLPNLPRLRFSKEGNLLAVTTADN------------- 651 (1101)
Q Consensus 610 ---~iwd~~~~~~~~~~~------~~~----------------~~~~v~~v~~s~~g~~l~~~~~d~------------- 651 (1101)
--|=-.+.+.+.... .|+ ...+|......|...-=.....|.
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 001000111111000 000 000000000011000000000000
Q ss_pred -cEEEEEccccccccccccCC----CcccccCcceee------eeeecccccccc------CCCCCc-cee---------
Q 001319 652 -GFKILANAIGLRSLRAVENP----PFEALRTPIESV------ALKVSASSAVSS------GTPANC-KVE--------- 704 (1101)
Q Consensus 652 -~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~------~~s~~~~~l~~~------~~~~~~-~~~--------- 704 (1101)
.++-.+........-.-.+. ......+++..+ ...|...-+... ...... .+-
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~ 529 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGK 529 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCC
Confidence 00000000000000000000 000000000000 000100000000 000000 000
Q ss_pred ------c---cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc-cEE------------EEEeecCcccEE--EeecCCe
Q 001319 705 ------R---SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS-KVV------------RLLYTNSAVGLL--ALGSNGV 760 (1101)
Q Consensus 705 ------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~i~------------~~~~s~~~~~l~--~~~~dg~ 760 (1101)
+ ...+......+-.+ .+.+.+ .+..+|.. .|. +-.|+.+..+++ -.+..|.
T Consensus 530 ~~sat~~v~~s~s~r~~s~v~G~i---SKFRH~--~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~ 604 (1012)
T KOG1445|consen 530 PISATNRVPLSQSVRPKSCVVGQI---SKFRHV--DGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGV 604 (1012)
T ss_pred Cccccccccccccccccceeeccc---hheeec--cCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCce
Confidence 0 00000000000000 000000 00011111 010 011222333333 3455789
Q ss_pred EEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEEc-CCeEEEEECCCc---
Q 001319 761 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTF--- 835 (1101)
Q Consensus 761 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~--- 835 (1101)
|.||++......++|... +......|+.+.|.| |...||++. ||.|++|.+..+
T Consensus 605 iai~el~~PGrLPDgv~p---------------------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGVMP---------------------GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred EEEEEcCCCCCCCccccc---------------------ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 999998876655554332 222567789999999 667788776 899999998643
Q ss_pred ----eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCc
Q 001319 836 ----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 911 (1101)
Q Consensus 836 ----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 911 (1101)
.....+..|...|+++.|+|-....|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+|+.+.||+
T Consensus 664 e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 664 ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce
Confidence 3456678899999999999977789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-E----eCCeEEEEEcCCce--eeeEeccCCCCCCCEE
Q 001319 912 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V----HETQLAIYDASKME--RIRQWTPQDALSAPIS 984 (1101)
Q Consensus 912 v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~----~d~~i~v~d~~~~~--~~~~~~~~~~h~~~v~ 984 (1101)
|++|+-.+++.. +..-.+.....-..+.|--||+++++ | +.++|.+||..+.. .+....... .-.+.
T Consensus 744 ~rVy~Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~L 817 (1012)
T KOG1445|consen 744 LRVYEPRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPL 817 (1012)
T ss_pred EEEeCCCCCCCc----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCccc
Confidence 999999886642 22222322245567889999999888 3 25679999987654 222211110 22233
Q ss_pred EEEEccCCCE-EEEEeCCCcEEEEeCCCCc
Q 001319 985 CAVYSCNSQL-VFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 985 ~v~~s~dg~~-l~s~~~dg~i~vwd~~~~~ 1013 (1101)
--.+.+|... +++|-.|..|..|.+-.-+
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEecCCC
Confidence 3345566654 5678899999999986543
No 61
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.2e-31 Score=245.23 Aligned_cols=287 Identities=19% Similarity=0.269 Sum_probs=252.6
Q ss_pred eEeecCCCcEEEEEEec---CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 338 AVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fsp---dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
...-+|+.+|-.++||| +| |+|+++++|+.-.+-+=++|.-+- ++.||.+.|++...
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeec
Confidence 34457999999999986 66 688999999999988888888776 49999999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeec
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~ 492 (1101)
..+...-|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++||| ....+...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999988773 3 5888999999999999 799999999999999 44556788999
Q ss_pred CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
|.+.|..+.|.... +.+++++.|++||+||.+++.....+.. ..+|+++.++++|+++.++- .+.|.+||..
T Consensus 142 htg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 99999999997643 6788889999999999999998887764 45699999999999988774 5679999999
Q ss_pred CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
+..+++.+.... .|.+.+.+|+...+++|++|..++.||..+++.+..+ ..++.++|.|+.|+|+|...++|+.||+
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCce
Confidence 999998887654 4888899999999999999999999999999988885 3455679999999999999999999999
Q ss_pred EEEEEcccc
Q 001319 653 FKILANAIG 661 (1101)
Q Consensus 653 i~iwd~~~~ 661 (1101)
|++|....+
T Consensus 291 irlWQt~~~ 299 (334)
T KOG0278|consen 291 IRLWQTTPG 299 (334)
T ss_pred EEEEEecCC
Confidence 999998765
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.1e-29 Score=306.31 Aligned_cols=292 Identities=14% Similarity=0.184 Sum_probs=236.1
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~ 419 (1101)
..|.+.|++++|+|+|+ ++|+|+.|+.|+||++.+...... . ...+...+. +...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCCC
Confidence 34899999999999998 568999999999999764211000 0 000001122 346899999988 578
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999887665 6789999999999997 667 899999999999999 788888888755 578
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC---
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--- 573 (1101)
.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 9999854 357899999999999999998765 355667888899999997 7888999885 89999999874
Q ss_pred ---CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec-----------cCCCCCCCCeeEEec
Q 001319 574 ---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSK 639 (1101)
Q Consensus 574 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~s~ 639 (1101)
...+..+.+|.. .+..++|++++++|++|+.|+.|++|+......+..+. ...+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356788888876 78889999999999999999999999987654433221 112234589999999
Q ss_pred CCCEEEEEEcCCcEEEEEc
Q 001319 640 EGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~ 658 (1101)
++..|++|+.+|.|++|++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
No 63
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=233.34 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=220.4
Q ss_pred ccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 399 ~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.+++.+|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34688999999999999999999999999999999999999888 7889999999999999998 699999999999
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC--CeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+|| .+|+.++.|.+|.+.|+.+.|+. +...+++|+.|.++++||-++. +++..+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999976 4579999999999999998764 4455566666678888775 456777
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
|+. ||+++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+.++.....-...
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 775 999999999999988777765 7999999999999999999999999999999999999888765555667
Q ss_pred EEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++.....+++|+.||.|.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 78888889999999999999999876
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=250.87 Aligned_cols=292 Identities=19% Similarity=0.274 Sum_probs=244.2
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
....+.+..|+|||.++++++-||.+.+|++..++...+-+..+ ... .+ -+..+|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~-fM-------Mmd~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDN-FM-------MMDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hcc-ee-------ecccceEEEeeccc
Confidence 45677889999999999999999999999987654322221111 111 11 17889999999999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEee-CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 893 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 893 (1101)
...+|+|+ ||+|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|--+.+|+++.+++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 7999999999999 8888889999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC-CEEEEE-eCCeEEEEEcCCceeee
Q 001319 894 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVV-HETQLAIYDASKMERIR 971 (1101)
Q Consensus 894 l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~-~d~~i~v~d~~~~~~~~ 971 (1101)
..|++||.++++++.||+|++|+..+.++..++.... ....+..+..-|.+ ..++++ ..+++.|.++. |+.++
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVr 428 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVR 428 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEe
Confidence 9999999999999999999999999999877653321 22567777666643 445544 47888888886 77788
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
.+.......+...+.+.||.|.|+.+.++|+.++-|.+.+|.+-..+.. |.. -+++++-+| ..++|+
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V----------hEk--dvIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV----------HEK--DVIGLTHHP-HQNLLA 495 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec----------ccc--cccccccCc-ccchhh
Confidence 8876655577788889999999999999999999999999999888763 333 456899999 499999
Q ss_pred EEECCCeEEEEe
Q 001319 1052 IGLTDGSVKVME 1063 (1101)
Q Consensus 1052 s~~~Dg~v~iWd 1063 (1101)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.4e-28 Score=267.97 Aligned_cols=285 Identities=22% Similarity=0.400 Sum_probs=247.9
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|..+|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 367899999999999999999999999999999999876444 5778999999999999998 79999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++.+..+..|...+.++.|++. +.++++++.|+.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 777888889999999999999874 578888888999999999988888888878888999999999999888764
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
++.|.+||+.+++....+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+. ..+.++.|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcC
Confidence 78999999999998888887765 78999999999999999999999999999988887775443 3789999999
Q ss_pred CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEE
Q 001319 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEI 719 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 719 (1101)
++.++++++.++.+++|+..++ .....+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~-~~~~~~--------------------------------------------------- 257 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG-ECVQTL--------------------------------------------------- 257 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc-eeEEEc---------------------------------------------------
Confidence 9888888888999999998754 111111
Q ss_pred EeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 720 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..|...|.++.|++++..+++++.||.+++|+
T Consensus 258 --------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 --------------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 12566789999999999999999999999995
No 66
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=221.76 Aligned_cols=310 Identities=18% Similarity=0.221 Sum_probs=240.6
Q ss_pred ceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
..+.++..+..|.+|+|+|.|. |.|+|+...+++|-.+..-..++.. .+.....+.+..+.-+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 4556677788999999999998 7799999999998765432221100 0000000112223456799999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecC--CcccccceeeecccCcEEEEEEecC---CCceEEEEec-CCceEEEEE-cCCceeE
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d---~~~~~l~s~~-~d~~v~iwd-~~~~~~~ 488 (1101)
|+|++||+|++|.+|++.-.+. ......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-| .+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 9999999999999999876653 3333344468889999999999765 233 566654 577888889 9999999
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecCCC
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
.+.||++.|.++- +. +|.++++|+.|.+||+||++-..+..++... ...|.+++..|.|++|+++..
T Consensus 178 a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~--- 251 (350)
T KOG0641|consen 178 ALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA--- 251 (350)
T ss_pred eecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC---
Confidence 9999999998874 22 5679999999999999999888777654321 247899999999999999975
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEeeccCCCCCCCCeeEEec
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
|....+||++.++.++.|..|.. .+.++.|+|...++++++.|..|++-|+... ..+...-...+...+..+.|+|
T Consensus 252 -dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 252 -DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred -CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 88899999999999999999987 8999999999999999999999999998642 1111111223344678899999
Q ss_pred CCCEEEEEEcCCcEEEEEcc
Q 001319 640 EGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~ 659 (1101)
..-.+++.+.|.++.+|.+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 99999999999999999753
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=4.4e-30 Score=238.42 Aligned_cols=256 Identities=17% Similarity=0.248 Sum_probs=225.0
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce-
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE- 879 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~- 879 (1101)
+|.+.|++.++..+....|+++ |=+-++||.-+|..+..+. |..-|.+++|+. |.++|++|+.+.-++|||++..+
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCC
Confidence 3888888888888888888887 7789999999999998886 788899999999 89999999999999999998653
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 959 (1101)
+..++.+|.+.|..+-|....+.++|++.|++||+||..++...+..... ..++++-+++||++|.++..+.|
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEecCcee
Confidence 46788999999999999998899999999999999999999887776655 78999999999999999999999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEE
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1039 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 1039 (1101)
.+||..+...+..+.. ...|.+..++|+...+++|++|+.++.||+.+|+.+.... .+|.. .+.+
T Consensus 208 ~Fwdaksf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n---------kgh~g--pVhc 272 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN---------KGHFG--PVHC 272 (334)
T ss_pred EEeccccccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc---------cCCCC--ceEE
Confidence 9999999999999887 6789999999999999999999999999999999887642 12444 4569
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCCC--CccccCCCCCCCCC
Q 001319 1040 VAAHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVSPPVDNGIL 1082 (1101)
Q Consensus 1040 l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~--~~~~~~~~~~~~~~ 1082 (1101)
+.|+| |+...++|++||+|++|.+..++ +.|+-..|-+.|.-
T Consensus 273 VrFSP-dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 273 VRFSP-DGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred EEECC-CCceeeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 99999 79999999999999999988777 57777777655443
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.9e-28 Score=297.68 Aligned_cols=322 Identities=16% Similarity=0.208 Sum_probs=246.4
Q ss_pred cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC----ccc
Q 001319 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (1101)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~ 441 (1101)
+|.+++|+......... .....+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888775443221 011124569999999999999999999999999999998642 111
Q ss_pred c-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCe
Q 001319 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1101)
Q Consensus 442 ~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~ 519 (1101)
. ....+ .+...|.+++|++.... +|++++.|++|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11123 34567999999986433 799999999999999 888889999999999999999864 4579999999999
Q ss_pred EEEEecCCCCeeeeccCCCCceEEEEEc-cCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcceEEEEEeCCC
Q 001319 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 597 (1101)
|++||+.++.....+..+ ..+.++.|+ ++|.++++|+. ++.|++||+++++ .+..+.+|.. .+..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666544 568899994 57999999985 8999999998765 5667778776 78899997 67
Q ss_pred CEEEEEeCCCcEEEEECCCC------eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCC
Q 001319 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 671 (1101)
.++++++.|++|++||+..+ ..+..+..+ ...+.+++|+|++.+|++|+.|+.|++|+........ ..
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~-s~--- 746 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL-SY--- 746 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-EE---
Confidence 89999999999999999743 455666554 3468899999999999999999999999976441110 00
Q ss_pred CcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCccc
Q 001319 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 751 (1101)
Q Consensus 672 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 751 (1101)
.+... .....+.. ..+...|.+++|++++..
T Consensus 747 ------------~~~~~----------------------------------~~~~~~~~---~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 747 ------------KFKTI----------------------------------DPVSGLEV---DDASQFISSVCWRGQSST 777 (793)
T ss_pred ------------ecccC----------------------------------Cccccccc---CCCCcEEEEEEEcCCCCe
Confidence 00000 00000000 225667999999999999
Q ss_pred EEEeecCCeEEEEEe
Q 001319 752 LLALGSNGVQKLWKW 766 (1101)
Q Consensus 752 l~~~~~dg~v~~w~~ 766 (1101)
+++++.+|.|++|++
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 999999999999985
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.6e-30 Score=256.65 Aligned_cols=295 Identities=18% Similarity=0.231 Sum_probs=253.5
Q ss_pred ccCCCCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCc
Q 001319 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1101)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 407 (1101)
..+.+|......+. |.++|..+.|-++..+ |++|+.|..|++|++..++... ..++.|..+
T Consensus 159 v~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g 220 (459)
T KOG0288|consen 159 VEDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLG 220 (459)
T ss_pred hhcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCC
Confidence 34456666666677 9999999999999653 5999999999999998766322 135888899
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.|+++.|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++|| ..+.|
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C 295 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYC 295 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhe
Confidence 99999999999999999999999999999987665 7889999999999998777 599999999999999 77888
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceE
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
..++.. ...+..|+.. ...+++|..|+.||+||+++.........++ .|+++..+++|..+++++. |.++
T Consensus 296 ~kt~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl 365 (459)
T KOG0288|consen 296 SKTVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTL 365 (459)
T ss_pred eccccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCce
Confidence 776653 3346666653 2568999999999999999999988887776 7999999999999999986 8899
Q ss_pred EEEeCCCCeeEEEecccC---CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 567 VEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.+.|+++.+....+.... ....+.+.|+|++.|+++|+.||.|+||++.++++...+........|++++|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 999999999888876532 22467799999999999999999999999999999999887766557999999999999
Q ss_pred EEEEEcCCcEEEE
Q 001319 644 LAVTTADNGFKIL 656 (1101)
Q Consensus 644 l~~~~~d~~i~iw 656 (1101)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999998
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=4.1e-29 Score=280.48 Aligned_cols=305 Identities=18% Similarity=0.262 Sum_probs=249.6
Q ss_pred CCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
++..|.+|+.+|||. .+|||+ .|+.++||+.+.--. ..+.++.. .+.....+..|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999998 469999 899999999754110 01111111 12222357789999999999999999
Q ss_pred EEEEECCCeEEEEeecC----------C-----cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~----------~-----~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. +|++++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234557889999999999999999 899999999999999 888
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC------CceEEEEEccCCCEEEEeec
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+..+.+....+..+- .....+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999966 67999999999999999977755555544432 25788999999999999887
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC-----CC------------EEEEEeCCCcEEEEECCCCeeeE
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
-..+...+.|.+..+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|+.|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 777788999999999999999999998 8999999872 11 46678999999999998777765
Q ss_pred eeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
....-. ...|.+++|+|||..|++++.||+|.+..++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543322 237999999999999999999999999988754
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=8e-29 Score=244.51 Aligned_cols=291 Identities=19% Similarity=0.320 Sum_probs=242.8
Q ss_pred CCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
-.|++....+-|.+.|.+|... +++ +.+|+.||.++|||.. |+... ++.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceee
Confidence 4567777888899999999999 444 5799999999999976 55443 48899999998
Q ss_pred EEEccCC---CEEEEEECCCeEEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC---
Q 001319 412 VAWSPDG---NYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--- 483 (1101)
Q Consensus 412 ~~~spdg---~~las~~~d~~i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~--- 483 (1101)
++|--.. ..+++++.|.++++|.++.++... ......||...|.++...++|. .+++|+.|.+|+||+ ..
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 8885433 359999999999999998876532 2223459999999999999999 799999999999999 21
Q ss_pred ----------------------CceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCce
Q 001319 484 ----------------------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1101)
Q Consensus 484 ----------------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 541 (1101)
+.++.++.||+.+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ...
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cce
Confidence 134567899999999999975 358999999999999999999988877644 458
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe---eEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1101)
.++.++|..++|++++. +..|++||.+++. ...+|.+|.+ .|..+.|+|... .|++++.|+++++||+++-
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999987 8899999998753 5677889988 899999999764 5667899999999999987
Q ss_pred e-eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 618 N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 618 ~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+ .+..+..|. ..|.++.|+ ++..+++|+.|.+|+++...
T Consensus 379 k~plydI~~h~--DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 379 KAPLYDIAGHN--DKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCcceeeccCC--ceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 7 788887664 489999997 56699999999999998643
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.9e-28 Score=234.59 Aligned_cols=307 Identities=14% Similarity=0.214 Sum_probs=240.1
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCcee-ccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
....|++.+.+-+|||||. |+|+|+.|..|+|.|+...--. ....+..-+.+ ..+|+. +++..|.+.|+++.|+|.
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~q-a~hPvI-RTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQ-ARHPVI-RTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcc-cCCceE-eehhhccCcccceeecch
Confidence 3345999999999999998 8899999999999998621000 00000000111 112222 468899999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe---ecC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGH 493 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~---~~h 493 (1101)
...|++|+.|++|++||+..-...+-++.+ ....+|.++.|.|.|. +|+.|.+-.++++|| .+-++...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999765433333233 3456899999999999 799999999999999 776665433 469
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-C-CCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
++.|+++.+++ .+++.++++.||.|++||--+..++..+.. | +..|.+..|+.+|+++++.+. |..+++|.+
T Consensus 261 t~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEI 334 (430)
T ss_pred ccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeee
Confidence 99999999976 668999999999999999888777765532 3 347999999999999999885 999999999
Q ss_pred CCCeeEEEecccCC----cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEE
Q 001319 572 SEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
.+++++..+.|... .--+...|+....+++.-. ..+.+.-||.+++..+..+. .+|.+.+..+.-||.+.-+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEEeCCCCCceee
Confidence 99999999987521 1122356777778887755 56789999999987766654 356678999999999999999
Q ss_pred EEcCCcEEEEEc
Q 001319 647 TTADNGFKILAN 658 (1101)
Q Consensus 647 ~~~d~~i~iwd~ 658 (1101)
++.|..+++|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 999999999963
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=251.24 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=238.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+.|.+++|||...|=+|+.+ .-.+.||+..+..... ++......|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 3468999999996655445443 3489999988766543 2444567899999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+..|.|+|||+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 67899999999999999886 899999999999999 55555568999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~ 580 (1101)
|+|.. +.++++|+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 99864 47999999999999999998865555556889999999999999999986 6689999999655 44455
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
..|.. .|+|+++..++..|++++-|+.|++||..+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 54665 89999999999999999999999999999999999887754 6899999999999999999999877543
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.9e-27 Score=234.87 Aligned_cols=286 Identities=20% Similarity=0.343 Sum_probs=241.0
Q ss_pred cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCC
Q 001319 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 449 ~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
-|.+.|.++.-. ++ .++||+.||.+++||..|++...+.||.++|.+++|.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588899999887 55 7999999999999999999999999999999988876432 224699999999999999887
Q ss_pred CCeee----eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-------------------------CCeeEE
Q 001319 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1101)
Q Consensus 528 ~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-------------------------~~~~~~ 578 (1101)
+.... ...+|...|.++...++|..+++++. |.+|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 66543 33488889999999999999999997 9999999922 123566
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.||.+ .|..+.|++ ...+++++.|.+|+.||+.++.....+.... .++++..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7888888 899999988 6789999999999999999999888876543 5789999999999999999999999986
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
+++.
T Consensus 330 R~~~---------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 330 RTGD---------------------------------------------------------------------------- 333 (423)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 5440
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
|
T Consensus 334 -----------------------------------------------------------------------------g-- 334 (423)
T KOG0313|consen 334 -----------------------------------------------------------------------------G-- 334 (423)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred EEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce-EEEeeccCCCCeeEEEEc
Q 001319 819 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 819 la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s 897 (1101)
.-...++.+|.+.|.++.|+|.+...|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|+
T Consensus 335 ----------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 335 ----------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred ----------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 011235567888899999999888899999999999999999887 899999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 001319 898 TSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
++..+++||.|.+|+++.-..
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred -CCceEEeccCcceEEEecccc
Confidence 557999999999999987543
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-27 Score=222.22 Aligned_cols=287 Identities=12% Similarity=0.128 Sum_probs=236.8
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
+.+.||..+++.|.|+.+|. ||.++++|.++.+|-..+|+.+- ++.||++.|+|++.+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCC
Confidence 44567999999999999999 77899999999999988898876 48999999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-----CCceEEEEE-c-------CC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-L-------SG 484 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-----~d~~v~iwd-~-------~~ 484 (1101)
.+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|.. ++.+. ..+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998773 2 34668999999999993 44333 345788999 4 33
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
.+...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 457888888899999999875 4799999999999999999976554 44678889999999999999999986 8
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCc--EEEEECCCCe------------eeEeeccCCCC
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IKFWDMDNVN------------ILTSTDAEGGL 629 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~------------~~~~~~~~~~~ 629 (1101)
.+-++||..+-+.++++.... ++++.+++|...+++.||.... |.--+.+.|+ .+..+ .+|.
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv--kGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV--KGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc--cccc
Confidence 899999999999999998754 7999999999888888764322 2222222222 22333 3557
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
++|++++|+|+|+..++|+.||.|++...+.
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7999999999999999999999999986654
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=266.71 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=251.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
.|+....+......-.|...|.+..|. +| .+++|+.|++|++||..++..+.. .+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCC
Confidence 444444444333333467899999999 44 358999999999999999887752 388999
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
+.|.+++|..-+.+|++|+.|.+++|||+.+|++.. .+.+|...|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999998888999999999999999999999988 78899999999987644 689999999999999 8899
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
++..+.+|.++|.++... +.++++|+.|++|++||+.+.++...+.+|...|.++.+... ..+++|+. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 469999999999999999999999999999999999988776 88999987 889
Q ss_pred EEEEeCCCC-eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 566 i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
|++||+.++ +++.++.+|.. .+..+. ..+++|++++.|++|++||..+++++..+... +...|..+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999887 454433 45689999999999999999999999999874 33456666664 4788
Q ss_pred EEEEcCCcEEEEEcccc
Q 001319 645 AVTTADNGFKILANAIG 661 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~ 661 (1101)
++++.|+.+++||+.++
T Consensus 468 l~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEecCCeeEEEecccC
Confidence 99999999999999988
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.7e-27 Score=219.79 Aligned_cols=275 Identities=15% Similarity=0.224 Sum_probs=235.8
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~ 419 (1101)
.+|...|.+|+|+-+|.+ ||+|+.|+++.+|+++....... ....+|.+.|-.++|+| ...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCc
Confidence 358899999999999996 59999999999999987744331 24788999999999999 567
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
.+|+++.|.+|++||+..+++... ... .+.=.-+.|+|+|. +++.++.|..|.+.| .+.+.+...+ ..-.+.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~---i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTAR---IET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEE---eec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceee
Confidence 899999999999999999998773 322 23334688999999 799999999999999 6666554443 445678
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
-++|+. ++.+++.....|+|.|..+...+....+..|.....|+.|+|+|+++|+|+. |..+.+||++.--+.+
T Consensus 152 e~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICER 225 (313)
T ss_pred eeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhe
Confidence 888875 3456766777899999999999999999999999999999999999999997 8899999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+..+.- +|..++|+-+|++|+++++|..|-|-++++|..+..++..+ +...++|+|...+||.+++|
T Consensus 226 ~isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 9988776 89999999999999999999999999999999999998754 56899999999999998775
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.5e-27 Score=221.11 Aligned_cols=300 Identities=12% Similarity=0.207 Sum_probs=239.0
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.||++.|+|++..-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998998777 7999999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEecc-----CCeEEEEecC-------CCCeeeeccCCCCceEEEEEc
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-----d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 547 (1101)
| .+|+++..++ ...+|..+.|++. |++++.... .+.|.++|++ ..++...+..+...++.+.|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999987 4668999999874 456555543 3578999987 445567777788899999999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeE-EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
|-+++|++|.. +|.|.+||.++|+.. ..-..|.. .|+.++++++..++++++.|.+-++||+.+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999975 999999999998554 44455555 8999999999999999999999999999999999988754
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceecc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 706 (1101)
.+|++.+++|....++.|+...-.-+ .+.....-.++..-+
T Consensus 232 ---~PvN~aaisP~~d~VilgGGqeA~dV---TTT~~r~GKFEArFy--------------------------------- 272 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQEAMDV---TTTSTRAGKFEARFY--------------------------------- 272 (327)
T ss_pred ---ccccceecccccceEEecCCceeeee---eeecccccchhhhHH---------------------------------
Confidence 37999999998888887765332222 111000001111000
Q ss_pred CCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecC
Q 001319 707 SPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~ 768 (1101)
+..-..+ +...++|-++|++++|+|+|+...+++.||.|++.-++.
T Consensus 273 -----------h~i~eEE-----igrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 273 -----------HLIFEEE-----IGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -----------HHHHHHH-----hccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0000000 011167999999999999999999999999999986653
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.6e-27 Score=223.75 Aligned_cols=273 Identities=17% Similarity=0.268 Sum_probs=220.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCC-ceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
..+.|.+++|||....+++.||-||+||+|+++.. ..+. +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999873 3322 2366799999999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+|||.|++|+.|| ....++.++. -.+++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 477899999999999877666899999999999999 7777887776 45567777
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--ee
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI 576 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 576 (1101)
..-. .+++.+..++.|.+|+++++...+.. .. -.-.++|++..+|....+.|+- +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 47889999999999999776544322 22 2236889999998888888876 777877777765 44
Q ss_pred EEEecccCC--------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 577 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
-.+|+.|.. ..|+.++|+|.-..|+++|.||++.+||-.....+...+.+.. +|++..|+.+|.+++.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 556666652 2366799999999999999999999999988877777666544 899999999999888764
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.7e-27 Score=265.93 Aligned_cols=304 Identities=16% Similarity=0.253 Sum_probs=242.9
Q ss_pred CcccEEEEEeecCcccEEEee--cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 736 TSSKVVRLLYTNSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~--~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
+...|.++..+|+|..+++++ .||.+++|+.+.--. ....++..-...+.. . ..|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~-m--~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT-M--DDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee-e--ccccCceeEEEEC
Confidence 455689999999999999999 899999998653211 011111110011111 1 1399999999999
Q ss_pred CCCCeEEEEc-CCeEEEEECC------------------CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 814 KNDSYVMSAT-GGKISLFNMM------------------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
+||++||+|+ |+.|.||+.. .++.+..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 5668999876 2346788999999999999999 999999999999999999
Q ss_pred eecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 875 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 875 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
..+.+.+.++.+|.+.|..+.|.|-|++|||-++|++|++|++.+....+...-.............+.|||||.+|++.
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 99999999999999999999999999999999999999999988866555443332222222678899999999999984
Q ss_pred e-----CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccC-----CC------------EEEEEeCCCcEEEEeCCCC
Q 001319 955 H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN-----SQ------------LVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 955 ~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d-----g~------------~l~s~~~dg~i~vwd~~~~ 1012 (1101)
. -..+.|.+-.+.+.-..+.+| .+++++++|+|. .+ .+|+|+.|++|.||.....
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2 357889999888888888776 789999999971 11 5778999999999999877
Q ss_pred ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1013 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.+..+. +-..-.++.++|+| ||..|+.+|.||+|.+..+++.|
T Consensus 315 RPl~vi~-----------~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 315 RPLFVIH-----------NLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred Cchhhhh-----------hhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 7665544 22223467999999 79999999999999999998766
No 81
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.1e-26 Score=258.48 Aligned_cols=286 Identities=13% Similarity=0.103 Sum_probs=221.2
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~la 422 (1101)
-..|....+++|+..+ ++++.+..+..|+...+..+.. .............+.+|.+.|.+++|+| |+++||
T Consensus 20 ~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 20 FLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred eeccccccccCCCCCc-EeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 3467777888887644 5667788888898766543221 0000111111234789999999999999 899999
Q ss_pred EEECCCeEEEEeecCCcc----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 423 VAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+||| .+++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999987532 1233468899999999999998644 799999999999999 8888899999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc-eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT- 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~- 575 (1101)
.+++|++ +|.+|++++.|++|++||++++.....+..|.+. +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999987 6689999999999999999998888777777653 45678999988888877655568899999998754
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+....... ..++..++|.|.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 34444434433556678999999999987 59999999999998777654432 335778888884
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=261.49 Aligned_cols=300 Identities=16% Similarity=0.204 Sum_probs=217.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc---CC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp---dg 418 (1101)
.|.+.||+|.||+||+| ||+|+.||.|+||.+...+.... ..-+....... +.. ...+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~-----~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFE-----YNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcc---cccccchhhhh-----hhh-ccccCccccccccccc
Confidence 59999999999999995 59999999999999976443210 00000000000 000 00011111111 01
Q ss_pred C--EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 419 ~--~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|+|++.|++|++|+ ....|+..|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222222211111123444788999999999999876 699999999999999 8888888887 999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|+||+|+|..| +++++|+.|+.||||++...+.......+ .-|++++|+|||++.++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999855 79999999999999999776665554444 67999999999999999997 8999999998877
Q ss_pred eEEEecccC-------CcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 576 IKRTYAGFR-------KKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 576 ~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
....+.-+. ...|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 766543221 2258889888743 46888999999999999998898888866555555678899999999999
Q ss_pred EcCCcEEEEEcccc
Q 001319 648 TADNGFKILANAIG 661 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~ 661 (1101)
+.|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998544
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4e-27 Score=225.60 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=234.5
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC------------Cc---ccccceeeecccCcEEEEEEecCCCc
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SN---DLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~------------~~---~~~~~~~l~~h~~~V~~l~~s~d~~~ 465 (1101)
.+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |. .-..+.++-.|.+.|+++.|.|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 4777999999999999999999999999999999871 11 1112346778999999999999999
Q ss_pred eEEEEecCCceEEEEE-cCCceeE--EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec---cCCCC
Q 001319 466 LCVVTCGDDKLIKVWE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGH 539 (1101)
Q Consensus 466 ~~l~s~~~d~~v~iwd-~~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~ 539 (1101)
+|++|+.|++|++|| ......+ .......+|.++.|+| .|.+|+.|....++++||+++.++...- ..|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999 3322222 2223456899999998 4579999999999999999998876643 34566
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc-cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
.|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999985 99999999999999998864 555678889999999999999999999999999999
Q ss_pred eeEeeccCCCCC---CCCeeEEecCCCEEEEEEc-CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 619 ILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 619 ~~~~~~~~~~~~---~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
.+..+.+.+..+ .-+...|+....+++.-.. .+.+.-||..+..+.. .+
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~-l~-------------------------- 391 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA-LL-------------------------- 391 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh-hc--------------------------
Confidence 999887664322 1234556666666655443 4678888887662211 00
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..+|.+.+..+..+|.+..+++++.|-.+++|-
T Consensus 392 --------------------------------------slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 392 --------------------------------------SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred --------------------------------------ccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 044888999999999999999999999999995
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-26 Score=248.55 Aligned_cols=277 Identities=15% Similarity=0.229 Sum_probs=236.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
.-++||..+ ++|+| ....|.+|+..++..... ...++..|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVa-lg~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVA-LGQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEE-ecceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346778555 56776 456899999998875431 22237899999999999999999999
Q ss_pred CeEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE-EeecCCcCeEEEeccc
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPHH 504 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~-~~~~h~~~v~~v~~~~ 504 (1101)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... ++.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999987776 5667 99999999998 44 799999999999999 5555443 4889999999999977
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
|+.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+. ..|+.|++||..+++.+......
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 678999999999999999988899999999999999999999 4557777764 46889999999999999887764
Q ss_pred CCcceEEEEEeCCCCEEEE--EeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 584 RKKSNGVVQFDTTQNHFLA--VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
. .|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 5999999999888887 44788999999999998888887654 8999999999999999999999999998654
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=249.56 Aligned_cols=351 Identities=16% Similarity=0.203 Sum_probs=267.3
Q ss_pred cCCCEEEEEECCCeEEEEeecCCccc---ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC--ceeEE
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLFN 489 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~--~~~~~ 489 (1101)
|.++||.+|+.||.|++|++...... .....++.|.+.|++++...+++ .|+|+|.|-+|++|+ ..+ -++.+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCcchhHhh
Confidence 47889999999999999998754331 11336789999999999999998 799999999999999 555 67889
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----------ecc-CCCCceEEEEEccCCCEEEEeec
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYD-APGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~-~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+..|.+.|.|+++. ..+...+++||.|+.|.+||++++.... .+. ++...|++++..+.|..+++|+.
T Consensus 113 ir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999983 2255799999999999999999774311 122 56668999999999988888886
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.|++||.++++.+..+.||.. .|..+..++||..+++++.||+|++||+...+++.++..|.. .|+++..+
T Consensus 192 ----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~ 264 (735)
T KOG0308|consen 192 ----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSS 264 (735)
T ss_pred ----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeC
Confidence 88899999999999999999998 899999999999999999999999999999999999988765 69999999
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
|+=..+++|+.||.|..=|+.+.........
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick------------------------------------------------- 295 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICK------------------------------------------------- 295 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEeec-------------------------------------------------
Confidence 9999999999999999988876422221111
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
...+|..+........+.+++.|+.|+-|....
T Consensus 296 -----------------~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~------------------------------ 328 (735)
T KOG0308|consen 296 -----------------EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP------------------------------ 328 (735)
T ss_pred -----------------CCCchhhhhhccccCCceeeeccccceecCCcc------------------------------
Confidence 223334444444444456777888888885321
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
..++++.|++.....+....+.+... .+-..+.| ..+|..-+.-. |.+.+.+-...|.+.+||+-.+
T Consensus 329 ----------~~~l~~s~~~~~~~T~~~~~~~~~~~-tp~~vi~G-g~ai~k~~mL~-dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 329 ----------DIALSVSGDLDFFSTDSNNHSCDLTN-TPDSVIPG-GAAIKKHAMLN-DKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred ----------ccccccCCCCCcccccCCCccccccC-CCceeccC-chhhhhhhhhc-CcceEeeecCCCCEEEEEeeee
Confidence 11444455544444444444444321 22222332 23355555555 8899999999999999999887
Q ss_pred eEEEeec
Q 001319 879 EVKSKLK 885 (1101)
Q Consensus 879 ~~~~~~~ 885 (1101)
..+..+.
T Consensus 396 ~~~~d~g 402 (735)
T KOG0308|consen 396 VKVEDFG 402 (735)
T ss_pred eehhhcc
Confidence 7665553
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.6e-27 Score=218.38 Aligned_cols=283 Identities=18% Similarity=0.242 Sum_probs=224.9
Q ss_pred EEEEEecC--CceEEEEEe-----ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CC
Q 001319 348 ISMDFHPS--HQTLLLVGS-----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1101)
Q Consensus 348 ~~v~fspd--g~~llasg~-----~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~ 419 (1101)
.++.|||- ++..+|++. ..|++.|-++..++.+.. +. --.-.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57788885 443333432 367899999864443321 11 1123568999999995 56
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
.+++++.||++++||... .-.++..++.|...|.++.|++-.++ .+++++.|++|++|+ ..++.+.++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 778889999999999543 23445578899999999999998776 677779999999999 88899999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCceEEEEeCCCC-ee
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEG-TI 576 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~ 576 (1101)
...|+|. ..+++++++.|+++++||++.......+..|...+.++.|+.-.. .+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 9999987 457999999999999999999888888899998999999998555 5556654 999999999874 46
Q ss_pred EEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCC-eeeEeeccCCCCCCCCeeEEec-CCCEEEEEEcCCcE
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i 653 (1101)
+..+.+|.- .|..+.|+|.. ..|++++.|-+++|||...+ ..+.+...|. .-|..+.||+ ++.++|+++-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCceeeecccccce
Confidence 677777765 89999999964 56788999999999998854 3445555443 3678899988 67899999999999
Q ss_pred EEEEc
Q 001319 654 KILAN 658 (1101)
Q Consensus 654 ~iwd~ 658 (1101)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 87
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=5.1e-25 Score=230.36 Aligned_cols=597 Identities=17% Similarity=0.210 Sum_probs=345.7
Q ss_pred CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce--e----EEeecCCcCeEEEecccCCCccE
Q 001319 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK--L----FNFEGHEAPVYSICPHHKENIQF 510 (1101)
Q Consensus 438 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~--~----~~~~~h~~~v~~v~~~~~~~~~~ 510 (1101)
|+..+.+..+.+|.+.|+++.|+|-... +|++|+.|..|+||. ..|-. + ..+.+..-.|.++.|++..|| +
T Consensus 66 Gr~~r~i~~l~~H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-i 143 (1012)
T KOG1445|consen 66 GRRTRDIGILAAHGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-I 143 (1012)
T ss_pred CccccccceeecccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-e
Confidence 3344455568899999999999996555 799999999999999 43321 1 122333446889999998876 4
Q ss_pred EEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceE
Q 001319 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNG 589 (1101)
Q Consensus 511 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~ 589 (1101)
+ ..+..|++++||+.+.+....+..|...|.++.|+.||+.+++.+. +..|+|||.+. ++.++...+|.+..-.
T Consensus 144 l-~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscK----dkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 L-ASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCK----DKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred E-EeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecC----CcceEEeCCccCCCccccccccccchhh
Confidence 4 4556799999999999999999999999999999999999999874 88999999875 6788888888875566
Q ss_pred EEEEeCCCCEEEEEeCC----CcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccccc
Q 001319 590 VVQFDTTQNHFLAVGED----SQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLR 663 (1101)
Q Consensus 590 ~~~~~~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~ 663 (1101)
.+.|..+-.+|++.|.+ ..|++||.+. +..+.++...... .|.---|.||.++|+.++ .+.++..+.+.....
T Consensus 219 Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 219 RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred eeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 68887766688887643 5799999876 4455555544332 345556888888777655 467787777765432
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE----------------------------
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII---------------------------- 715 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 715 (1101)
.+...-.+..+.. ....++-|....-+.. +++.+........++
T Consensus 298 yLs~v~~~tle~~---~~GA~lvpkral~VM~-----~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 298 YLSHVFELTLEEQ---TLGATLVPKRALHVMD-----GEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred chhhhhhhcchhh---hccceecchhhhhhcc-----hhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 2211111110000 0000000000000000 000000000000000
Q ss_pred ----EEEEEeCCCeEEEEcC-CCCCC-----------------------------------------------------c
Q 001319 716 ----LAEIVDSGQCRLVTMP-ESTDT-----------------------------------------------------S 737 (1101)
Q Consensus 716 ----l~~~~~~~~~~~~~~~-~~~~~-----------------------------------------------------~ 737 (1101)
-|.-.+......+.+. ....| .
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 0000001111111110 00000 0
Q ss_pred ccEEEEEeec----Cc------ccEEEeecCCeEEEEE------ecCCC---------CC---C-CCCeee---------
Q 001319 738 SKVVRLLYTN----SA------VGLLALGSNGVQKLWK------WHRNE---------QN---P-SGKATA--------- 779 (1101)
Q Consensus 738 ~~i~~~~~s~----~~------~~l~~~~~dg~v~~w~------~~~~~---------~~---~-~~~~~~--------- 779 (1101)
..+..+.+-| .| ..=.+-+....+..-. ..... .+ + .++...
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~ 529 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGK 529 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCC
Confidence 0000000000 00 0000000000000000 00000 00 0 000000
Q ss_pred --ec------------------cccccccCCccceeec-----cCCCCCCCCEeEEEecCCCCeEEE---EcCCeEEEEE
Q 001319 780 --SA------------------VPQHWLPSSGLLMAND-----VAGVNLEEAVPCIALSKNDSYVMS---ATGGKISLFN 831 (1101)
Q Consensus 780 --~~------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~dg~~la~---~~dg~i~vwd 831 (1101)
.. .+.-|.-..|...... +...+..-+-.+--|..+.+.+|+ |+.|.|.||+
T Consensus 530 ~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~e 609 (1012)
T KOG1445|consen 530 PISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYE 609 (1012)
T ss_pred CccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEE
Confidence 00 0000000001000000 000000111112224445556654 3478999999
Q ss_pred CCC-ceEE-EEeeC--CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-------eEEEeeccCCCCeeEEEEcCC-
Q 001319 832 MMT-FKVM-TTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-------EVKSKLKGHQKRITGLAFSTS- 899 (1101)
Q Consensus 832 ~~~-~~~~-~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~d- 899 (1101)
+.. |++- ..+.+ ....|+.+.|.|.|...||+++.||.|++|.+..+ ..-..+.+|...|+.+.|+|-
T Consensus 610 l~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA 689 (1012)
T KOG1445|consen 610 LNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA 689 (1012)
T ss_pred cCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh
Confidence 864 2221 11111 24569999999999999999999999999999865 334678899999999999995
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCcee-eeEeccCC
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER-IRQWTPQD 977 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~-~~~~~~~~ 977 (1101)
...|++++.|-+|++||+.+++.... +.+|. ..|..++|||||+.+++ +.|++|+||+..+.+. +..-.+..
T Consensus 690 advLa~asyd~Ti~lWDl~~~~~~~~-----l~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 690 ADVLAVASYDSTIELWDLANAKLYSR-----LVGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred hhHhhhhhccceeeeeehhhhhhhhe-----eccCc-CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 46899999999999999999775433 34555 78999999999999998 7799999999887654 22222222
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCcee--EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCD----GNIGVFDADTLRLR--CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~d----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
...--.+.|.-||+++++.+-| ..|.+||..+.... ..... .. +- .++-=.|.++.+-+|+
T Consensus 764 --gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l-Dv--------ap--s~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 764 --GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL-DV--------AP--SPLVPHYDYDSNVLFL 830 (1012)
T ss_pred --cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee-cc--------cC--ccccccccCCCceEEE
Confidence 2334567788899998876644 46889998875421 11110 00 00 0111224454466788
Q ss_pred EEECCCeEEEEeCCCCCC
Q 001319 1052 IGLTDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1052 s~~~Dg~v~iWd~~~~~~ 1069 (1101)
||-.|..|..|++.-.+.
T Consensus 831 tGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ecCCCceEEEEEecCCCc
Confidence 888999999999977663
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-25 Score=215.32 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=228.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+.|.++.|+++|.++ ++++.|.+++|||..+++.+.. +..+...|..++|......+.
T Consensus 13 ~~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 36789999999999965 5678888999999999987753 555677888999988777777
Q ss_pred EEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 423 s~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
.++. |.+|+.-++.+.+.++ .+.||...|++++.+|-+. .++|++.|++|++|| ...++...+.-...+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999999888 7889999999999999998 899999999999999 6677766665433344
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCC--eeeecc---CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~---~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
++|.| .|-++|++.....|++||++... +...+. ......+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45544 67788888877799999998752 222222 23457899999999999999875 888999999999
Q ss_pred eeEEEecccCCcc--eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
..+.++.++.... ....+|+||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999998875 345789999999877776665 56
Q ss_pred EEEEEcc
Q 001319 653 FKILANA 659 (1101)
Q Consensus 653 i~iwd~~ 659 (1101)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7777543
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=231.97 Aligned_cols=293 Identities=16% Similarity=0.231 Sum_probs=233.2
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecc----cccCccccccccccCCccEEEEEEccC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
.|.-.|.||+++||+++. .+++.+++|.=|++.+|+.... +|.. +....+.+... ++|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~~~-fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRV-FSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeeccccce-eecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 488899999999999965 7899999999999999885521 1111 11122223222 489999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
|+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999998777 6889999999999987766 699999999999999 667778899999999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
|.+|..... .+.+-+|+.|+++++|++ ..+....+.++...+.|++|-.+ ..+++|+. +|.|.+|++...++
T Consensus 289 v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 999987543 355666669999999999 44556667778888999999655 56778875 89999999999988
Q ss_pred EEEecccCC-----------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCC----eeeEeeccCCCCCCCCeeEEecCC
Q 001319 577 KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 577 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
+.+....++ ..+++++..|..+.+++|+.+|.|++|-+..+ .++..+.. .+.|+.++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653221 15778999999999999999999999998876 34444443 3468999999999
Q ss_pred CEEEEEE-cCCcEEEE
Q 001319 642 NLLAVTT-ADNGFKIL 656 (1101)
Q Consensus 642 ~~l~~~~-~d~~i~iw 656 (1101)
+++++|. ....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 9777663 34444444
No 90
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=235.46 Aligned_cols=286 Identities=15% Similarity=0.267 Sum_probs=237.3
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
..+.|.++.|+|...+=++.+..-.+.+|+.... ..... +. .....+.++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HH--hhccceeEEEeecC
Confidence 6678999999998877666776777888764321 11110 11 26778999999999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEE
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 894 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 894 (1101)
|+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778889999999999999999999999999999999999999999877999999999999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEe
Q 001319 895 AFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 895 ~~s~d~-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~ 973 (1101)
+|+|-. ..++|||.||+|++||+.+.. .......-+ .+|..+.+-|.|..+++++...++|||+.+|......
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 999964 489999999999999998853 111222112 6899999999999999999999999999966654443
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~ 1053 (1101)
... |...|+|+++..++..|++|+-|+.|+|||+.+.+.+..+.- .. .+++++-+| |+..++.|
T Consensus 234 ~~~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~--pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 234 MFN--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PG--PVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred hhc--ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------cc--ceeeEEecC-CCceEEEe
Confidence 332 489999999999999999999999999999999999988873 33 346888889 78999999
Q ss_pred ECCCeEEEEeCCCCC
Q 001319 1054 LTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1054 ~~Dg~v~iWd~~~~~ 1068 (1101)
..||.+.+=+....+
T Consensus 298 msnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 298 MSNGLVSIRRREVKK 312 (487)
T ss_pred cccceeeeehhhccc
Confidence 999999988766555
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=234.94 Aligned_cols=295 Identities=16% Similarity=0.234 Sum_probs=227.2
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
..|...|..+++.|.|.++++++-|..|++||++........ .....+ .....|.++.||
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------fr~l~P--~E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------FRQLQP--CETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------hhccCc--ccccccceeeec
Confidence 348888999999999999999999999999998754221110 000011 256679999999
Q ss_pred CCCCeEEEEc-CCeEEEEECCCceEEEE------------eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTFKVMTT------------FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+.|..|++.+ ....+|+|-...+.... .++|...++|.+|+|.....+++++.||+++||++...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9998777766 67899999876554433 3468889999999998788899999999999999986532
Q ss_pred -EEee-----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCC-CCcceEEEcCCCCEEEE
Q 001319 881 -KSKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 881 -~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~ 953 (1101)
+..+ .+-.-+++.++|++||+++|.|..||.|.+|+..+........+ ...|.. ..++++.||+||++|++
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCCCCceeEEEeccccchhhh
Confidence 2222 23345689999999999999999999999999866544433333 333332 58999999999999999
Q ss_pred -EeCCeEEEEEcCCcee-eeEeccCCCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeEeeCCCCcCC
Q 001319 954 -VHETQLAIYDASKMER-IRQWTPQDALSAPISCAVYSCNSQLVFATF------CDGNIGVFDADTLRLRCYIAPSTYLS 1025 (1101)
Q Consensus 954 -~~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~ 1025 (1101)
+.|+.+++||+...+. +..+... ....+-+..+||||.++|++|. ..|.+.+||..+.+.+..+.-
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i----- 455 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI----- 455 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-----
Confidence 7899999999997654 3333322 2256678999999999999976 467899999999999998873
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1026 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1026 ~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
....++.+.|+| .-+.|+.|+.||+++++--
T Consensus 456 -------~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 456 -------STASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred -------CCceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 244667899999 6888889999999988643
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=236.01 Aligned_cols=302 Identities=18% Similarity=0.265 Sum_probs=233.5
Q ss_pred CCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
.|......+. |+..|.++++.|.|.+ +++|+.|.+|++||+.....-. ..|+. +.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccc-hhhhc-------------cCcccccccce
Confidence 4444555555 6789999999999986 4899999999999998754332 11221 23445678999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcc---------cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
+.||+.|..|++.+....++|+|-...+. ++-+..-+||...++|.+|.|+.+. .++|++.||+++|||
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 99999999999998888999999875432 2333356799999999999999887 899999999999999
Q ss_pred cCC-ceeEEee-----cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCC--ceEEEEEccCC
Q 001319 482 LSG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGH--WCTTMLYSADG 550 (1101)
Q Consensus 482 ~~~-~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~--~v~~~~~s~d~ 550 (1101)
.+. +.+..++ +..-+++.++|++ +|.+|++|..||.|.+|+....... .....|.. .|+|+.||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 333 3333332 2344688888977 7789999999999999997554332 22334443 89999999999
Q ss_pred CEEEEeecCCCCCceEEEEeCCCC-eeEEEecccCC-cceEEEEEeCCCCEEEEEe------CCCcEEEEECCCCeeeEe
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTS 622 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 622 (1101)
++|++=+. |..+++||++.. +++....+... ..-+.++|+|+.+.+++|. ..|.+++||..+...+..
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999775 899999999875 45555444322 2345589999999999875 457899999999999998
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
+.... ..|..+.|+|.-+.|++|+.||++++|--
T Consensus 453 i~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 453 IDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecCCC--ceEEEEeecchhhheeeecCCCceEEEEC
Confidence 87764 37889999999999999999999999753
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.2e-25 Score=212.56 Aligned_cols=293 Identities=17% Similarity=0.277 Sum_probs=243.2
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+.+....+.|.++.|+. +|.++++++.|.++++||..++.....+..+.-.+..++|......++.++. ..|..|+
T Consensus 8 k~f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCceE
Confidence 44555677899999976 6789999999999999999999999998888888999999888888877765 3577899
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
..++.+.+.++.|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+. ..++|+|+|-++|++
T Consensus 84 yLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIFALA 158 (311)
T ss_pred EEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEEEEe
Confidence 999999999999999998 899999999999999999999999999998888777765543 678999999999999
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
...+.|++||++.-. ..++.
T Consensus 159 ~~~~~IkLyD~Rs~d-------kgPF~----------------------------------------------------- 178 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFD-------KGPFT----------------------------------------------------- 178 (311)
T ss_pred cCCCeEEEEEecccC-------CCCce-----------------------------------------------------
Confidence 988899999986431 00000
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
. |. .. .+...+.
T Consensus 179 --------------t--f~--------i~--------------------------------------------~~~~~ew 190 (311)
T KOG1446|consen 179 --------------T--FS--------IT--------------------------------------------DNDEAEW 190 (311)
T ss_pred --------------e--Ec--------cC--------------------------------------------CCCccce
Confidence 0 00 00 0134557
Q ss_pred eEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCe---eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 808 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS---TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i---~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
+.+.|||||++++.+. .+.+++.|.-+|..+.++..+...- ...+|+| |++++++|+.||+|.+|++.+++.+..
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 7899999999988887 6789999999999999988766543 5789999 999999999999999999999999999
Q ss_pred ecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 884 LKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 884 ~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+.+ +.+++.++.|+|.-..++|+ +..+-+|-....
T Consensus 270 ~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 270 LRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred ecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 998 79999999999986666665 456888876643
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=9.2e-26 Score=211.71 Aligned_cols=251 Identities=16% Similarity=0.200 Sum_probs=211.9
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+.+.+|...|.+++|+-||..||+|+.|+++.+|+++..+... .....+|.+.|-.++|.|.... .+++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 3477899999999999999999999999999999999875443 2357799999999999998776 7999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| ..++++.......+.+. ++|+| +|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~- 166 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN- 166 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec-
Confidence 99 99999988875555554 56666 678999999999999999887766554432 23467788887777666543
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
|.|.|.|.....-+++..+..|.. ...++.|+|+|+++++|+.|..+.+||+...-++..+....- +|..+.||
T Consensus 167 ---GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 ---GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred ---CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 478999999999999999999986 677899999999999999999999999998877777765543 89999999
Q ss_pred cCCCEEEEEEcCCcEEEEEcccccc
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
.||++||+++.|..|-|=++++|.+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred cCcceeeccCccceEEeEecccCCe
Confidence 9999999999999999888888743
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-25 Score=216.09 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=207.3
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC--EEEEEeCCCcEEEEEeecc
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~v~iwd~~~~ 878 (1101)
.|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ ... .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 59999999998 589999998 89999999999999999999999999999998 554 7889999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCe
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 958 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~ 958 (1101)
+++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-.|+.-....+. ...+.+.|+|.|.+++++....
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999999999999999999998754433332 3445599999999999999999
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
|-+|.+++-.....+.. ...+.++.|- ++..|++|..|+.|.+||-++....+.+.. |...+..+
T Consensus 191 i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A----------H~~RVK~i 255 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA----------HENRVKDI 255 (362)
T ss_pred EEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec----------chhheeee
Confidence 99999998887777655 4567788876 567899999999999999999777776653 77766644
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1039 VVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
..--.| ++.+|+|+|.||.|+|||++..
T Consensus 256 ~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecC-CceEEEEeccCceEEEEEcccc
Confidence 443455 6889999999999999999876
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-26 Score=240.15 Aligned_cols=287 Identities=21% Similarity=0.279 Sum_probs=234.2
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCC
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~ 428 (1101)
++..++.+.+.|.+|+.||.|++|++..-......+ ....+..|.++|..++..-+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 444554433345899999999999987644322111 0124778999999999999999999999999
Q ss_pred eEEEEeecCCcccccceeeecccCcEEEEEE-ecCCCceEEEEecCCceEEEEE-cCC--cee--------EEee-cCCc
Q 001319 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKL--------FNFE-GHEA 495 (1101)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~~~l~s~~~d~~v~iwd-~~~--~~~--------~~~~-~h~~ 495 (1101)
+|++|+...+. .....++..|.+.|.|+++ .++.. ++||||-|+.|.+|| .+| +.+ ..+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 1222367889999999999 66666 899999999999999 655 222 2333 7888
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|++++.++ .|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999866 5689999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
++.++..|.. .+.++..+|+-.++++|+.||.|+.-|+++......+--..+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999998 699999999999999999999999999998543333322222 6777877766666688888999999
Q ss_pred EEccc
Q 001319 656 LANAI 660 (1101)
Q Consensus 656 wd~~~ 660 (1101)
|....
T Consensus 324 W~~~~ 328 (735)
T KOG0308|consen 324 WKLEP 328 (735)
T ss_pred cCCcc
Confidence 97653
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=232.05 Aligned_cols=286 Identities=20% Similarity=0.295 Sum_probs=238.5
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|++++|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 367799999999999999999999999999999999877 223337888899999999999999 78889999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ .+.+...++.||++.|+++.|.... ..+++|+.|.+|+.||+....+..++. ....+..++.+ +..++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc-
Confidence 9 8888999999999999999987643 349999999999999999876665543 33345555554 445556554
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC--CCCCCeeEE
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRF 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~ 637 (1101)
|+.|++||.++..+......+. .++++..++++..+++++.|.++.+.|+++.+....+...+- ....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999999988765 699999999999999999999999999999998888765432 234788999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
||++.++++|+.||.|+||++.++ ++...+..
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~----------------------------------------------- 427 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSL----------------------------------------------- 427 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc-eEEEEecc-----------------------------------------------
Confidence 999999999999999999999887 33222211
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
......|+++.|+|.|..+++++.++.+.+|
T Consensus 428 ----------------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ----------------STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ----------------CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1123379999999999999999999999998
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.8e-25 Score=222.11 Aligned_cols=283 Identities=17% Similarity=0.201 Sum_probs=244.6
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
..|.++...|... .+.+|+.|..+.++|..+++.+. +++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheeec
Confidence 4788888888744 56899999999999999888765 599999999999999999999999
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec--CCcCeEEEe
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~--h~~~v~~v~ 501 (1101)
+.|..|+||......+.. ....|.++|+.+...|.|. ||++++.|++..+.| .+|.++..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998776554 5678999999999999999 899999999999999 88888766553 233588999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+| ||.++.+|..|+.|++||+........+.+|.++|..++|+.+|-+|++++. |+.|++||++.-+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 988 7789999999999999999999999999999999999999999999999985 7789999999988888888
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
......+..+.|.+.|.+++.+|.|=+|++++-.+.........+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766799999999999999999888888887655544333333333446789999999999999999999888754
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=246.87 Aligned_cols=275 Identities=14% Similarity=0.201 Sum_probs=213.7
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC------------------------CC-----Ce------ee
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP------------------------SG-----KA------TA 779 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~------------------------~~-----~~------~~ 779 (1101)
.|.+.|.++-|++||++|+++|.||.|+||.+...+... .. .. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999999999999999999999987621100 00 00 00
Q ss_pred eccccccccCCccceeecc-CCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC
Q 001319 780 SAVPQHWLPSSGLLMANDV-AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 858 (1101)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 858 (1101)
... .........+....+ .-.+|...|..+.||.++-+|-++-|.+|++|++....++..|. |..-|+|++|.|-|.
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000 011111111111111 11369999999999987654444449999999999999999997 899999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC--C
Q 001319 859 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT--P 936 (1101)
Q Consensus 859 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~--~ 936 (1101)
+++++|+-||.|+||++...+.+.-...+ .-|++++|.|||+..+.|+.+|.+++|+....+......+....+.. .
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988877655544 78999999999999999999999999999988777666665543322 1
Q ss_pred CCcceEEEcCCCC--EEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 937 TGDTRVQFNADQV--RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 937 ~~v~~~~~s~d~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
..|+.+.|.|... .|+++.|.+|+|||..+.+++..+.+.+. ...-....|+.||++|++|++|..|+||+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4699999987654 77788999999999999999999887654 4445678899999999999999999999986543
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=3.4e-25 Score=248.33 Aligned_cols=236 Identities=18% Similarity=0.259 Sum_probs=209.4
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.+...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++|| .
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 367788899888 67899999999999999999987763 3889999999999987455 899999999999999 9
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+|.|+..+.+|.+.|.++...+ ..+++|+.|.+|++|+++++.....+.+|..+|.++... +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 9999999999999999998643 578889999999999999999999999899999999997 889999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC-eeeEeeccCCCCCCCCeeEEecCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
++.|.+||+.++++++.+.+|.. .|.++.+.+. +++++|+.|++|++||+.++ +++.++..+.. -+..+. ..+
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~ 423 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRD 423 (537)
T ss_pred CceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--ccc
Confidence 88999999999999999999887 8888877765 89999999999999999999 89998887755 344444 368
Q ss_pred CEEEEEEcCCcEEEEEcccc
Q 001319 642 NLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++|++++.|++|++||..++
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred ceeEeccccccEEEeecccC
Confidence 89999999999999998876
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-25 Score=211.17 Aligned_cols=302 Identities=16% Similarity=0.218 Sum_probs=222.7
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccc-cccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR-AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
+|...|++++|+.||+.|++++.|+.|++|++.+-..... .++.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~----------------------------------- 128 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ----------------------------------- 128 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-----------------------------------
Confidence 3445899999999999999999999999999876311110 0000
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee-cCCeEEEEEecCCCCCCCCCeeeecccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQ 784 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~~w~~~~~~~~~~~~~~~~~~~~ 784 (1101)
.-..+..+.++|.||.+.++... ....+++|.+..... |...- ...
T Consensus 129 ----------------------------nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v 175 (420)
T KOG2096|consen 129 ----------------------------NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFV 175 (420)
T ss_pred ----------------------------cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccc
Confidence 00223557788888887666554 456888887654321 11100 000
Q ss_pred ccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 785 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
-||- -. +. ..|.-.+..+-+..+++++++++ |.+|.+|++. |+.+..+......-+..+.|| +|+++|+
T Consensus 176 ~~D~--~~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~ 245 (420)
T KOG2096|consen 176 HIDN--LE-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAV 245 (420)
T ss_pred cccc--cc-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEE
Confidence 1110 00 00 12666777888888999999998 7889999998 899998887777788899999 9999999
Q ss_pred EeCCCcEEEEEeec---c-----eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce-----EEee
Q 001319 864 GTEDSTIHIYNVRV---D-----EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV-----TIHI 930 (1101)
Q Consensus 864 g~~dg~v~iwd~~~---~-----~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~-----~~~~ 930 (1101)
++-.--|++|..-- | ..+..++||...|..++||++...++|.+.||++++||++-.-....- ....
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~ 325 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA 325 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence 99999999999752 2 234678999999999999999999999999999999998642111110 0111
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
+.....+....+..+|.|..|+++....+++|..++++....+... |...|++++|++||+++++++ |..++|+.-
T Consensus 326 pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 326 PLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred chhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 1112224556899999999999999999999999999988777654 489999999999999999998 888888763
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-25 Score=226.29 Aligned_cols=253 Identities=20% Similarity=0.253 Sum_probs=214.5
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccc--------------eee-ecccCcEEEEEEecCCCce
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------------~~l-~~h~~~V~~l~~s~d~~~~ 466 (1101)
...|.-.|.+|+++||++++++++.+++|.=|++.+|+..+.+ ..- ++|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999988743110 011 37889999999999999
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1101)
+|++|+.|..|.||+ .+.+.+..+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999 9999999999999999999997543 5799999999999999999998889999999999999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
...-++.+-+++. |.++++|++. -+....|.++.+ .+.+++|-. ..++++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888888777765 9999999994 344445666655 788888865 46899999999999999999888776542
Q ss_pred CCC----------CCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccc
Q 001319 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1101)
Q Consensus 626 ~~~----------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 665 (1101)
..+ ...|++++..|...++++|+.+|.|++|.+..+...+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 211 1267899999999999999999999999998874433
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-25 Score=238.13 Aligned_cols=258 Identities=17% Similarity=0.315 Sum_probs=222.0
Q ss_pred ccccCCCCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc-
Q 001319 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD- 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 404 (1101)
+|+.. ...+..... +.+.|+++.|+++|++ ||+|..+|.|.|||....+.+.. +.+
T Consensus 201 lW~~~--s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 201 LWSAS--SGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEecC--CCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 45444 444444444 3899999999999995 69999999999999988776652 566
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
|...|.+++|. +..+.+|+.|+.|..+|+...+.... .+.+|...|..++|++|+. ++++|+.|+.+.||| ..
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999998 77899999999999999998876554 4889999999999999999 899999999999999 78
Q ss_pred CceeEEeecCCcCeEEEecccCCCccEEEEec--cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 484 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
..++..+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++.....+. .+..|.++.|++..+-++++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 888899999999999999999865 5888865 69999999999877776655 4556999999999988877643 3
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
.+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999999999999999998 6899999999999999999999999998764
No 104
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.8e-24 Score=243.12 Aligned_cols=255 Identities=11% Similarity=0.125 Sum_probs=193.5
Q ss_pred EeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCCcc-
Q 001319 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1101)
Q Consensus 363 g~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~~~- 440 (1101)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 556777888886554322 247899999999999996 89999999999999999986432
Q ss_pred c----ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEec
Q 001319 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1101)
Q Consensus 441 ~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 515 (1101)
. .....+.+|...|.+++|+|++.. ++++++.|++|+||| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357799999999999999874 568999999999999 7787777775 567899999987 668999999
Q ss_pred cCCeEEEEecCCCCeeeeccCCCCceEE-----EEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcc-e
Q 001319 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKS-N 588 (1101)
Q Consensus 516 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~-v 588 (1101)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888765432 345689999999887544456899999985 56666554433212 2
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
......+++.++++|+.|+.|++|++..+.. ..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 2233344578888999999999999987643 333333334567889999864
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.7e-24 Score=195.18 Aligned_cols=306 Identities=15% Similarity=0.172 Sum_probs=228.5
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
....|.+++|+|.|...++++...+.++-....-.....+....... ..++. .....|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~p--------p~v~~--kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQP--------PSVLC--KRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCC--------CeEEe--eeccccCccEEEEEecCc
Confidence 56788999999999988888888888886543211110111000000 00111 112259999999999999
Q ss_pred CCeEEEEc-CCeEEEEECCC--ceE---EEEeeCCCCCeeEEEEecC---CCCEEEEEe-CCCcEEEEEeecceEEEeec
Q 001319 816 DSYVMSAT-GGKISLFNMMT--FKV---MTTFMSPPPASTFLAFHPQ---DNNIIAIGT-EDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~--~~~---~~~~~~~~~~i~~l~~s~~---~~~~la~g~-~dg~v~iwd~~~~~~~~~~~ 885 (1101)
|+++|+|+ |..|++..... ... -.++..|.+.|..++|-.+ ++.+|++++ .|-.|++=|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 77888876543 222 3467789999999999752 456777765 56788888999999999999
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC-CCCCCCcceEEEcCCCCEEEEEe-CCeEEEEE
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFNADQVRMLVVH-ETQLAIYD 963 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d 963 (1101)
+|.+.|.++ ++-++-.+++|+.|.+|++||+.-..+.......... +-....+.+++..|.|++|++|. |....+||
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 999999887 2335789999999999999999876655443222222 12226789999999999999986 89999999
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCccc-CCCCccceEEEEE
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL-NGSQTVYPLVVAA 1042 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~l~~ 1042 (1101)
+..++.+..+.+| ...|.++.|||...|+++++.|..|++-|+... +...+ +.+++ +|.+ .++.+.|
T Consensus 260 irg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el------~~~vv~ehkd--k~i~~rw 327 (350)
T KOG0641|consen 260 IRGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHEL------PIMVVAEHKD--KAIQCRW 327 (350)
T ss_pred eeCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcC------ceEEEEeccC--ceEEEEe
Confidence 9999999999887 899999999999999999999999999998742 22111 12222 2444 5578999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCC
Q 001319 1043 HPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1043 ~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
+|+ +.-+++.+.|.++.+|-+.
T Consensus 328 h~~-d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQ-DFSFISSSADKTATLWALN 349 (350)
T ss_pred cCc-cceeeeccCcceEEEeccC
Confidence 995 7778899999999999763
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.4e-25 Score=235.63 Aligned_cols=278 Identities=15% Similarity=0.300 Sum_probs=235.1
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE-EEEcc-CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSP-DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~-~~~sp-dg 418 (1101)
.+|+..|..+++.+.. .++++|.||++++|+-..++.+. .+.+.+|.+.|.+ +++-+ |+
T Consensus 11 ~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~-----------------~~~~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLE-----------------THAFEGPKGFIANSICYAESDK 71 (745)
T ss_pred ccCccchheeEecCCe--EEeecCCCCceeeeeccCccccc-----------------ceecccCcceeeccceeccccC
Confidence 3599999999998887 35789999999999976555433 2347778888888 88886 55
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
-.|++|+.|.+|.+|...+...+. .+.||...|.+++-..++. ++|||.|.++++|- .+++...+.+|+..|+
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGHTASVW 144 (745)
T ss_pred cceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCcchhee
Confidence 569999999999999999988766 7899999999999887775 89999999999997 4556677999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++..|.. .+++|+.|++|++|. .++...++.+|...|+.+++-+++. +++|+. ||.|++|++ +|+.+.
T Consensus 145 Av~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 145 AVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-DGEVLL 213 (745)
T ss_pred eeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-cCceee
Confidence 99987643 789999999999994 5778888999999999999988765 455553 999999999 899999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.+|.. -+.+++...++..++++|+|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|+.||.||||..
T Consensus 214 ~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 214 EMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred eeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 9999988 78889988888899999999999999976 77777776653 688898888885 677888999999987
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
...
T Consensus 288 ~k~ 290 (745)
T KOG0301|consen 288 DKD 290 (745)
T ss_pred ccc
Confidence 643
No 107
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=209.94 Aligned_cols=248 Identities=15% Similarity=0.270 Sum_probs=205.5
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP- 416 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp- 416 (1101)
...+.-.+.+..|+||+.....+++++.||+++|||+..... +-..++.|...|.++.|++
T Consensus 54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccc
Confidence 344556789999999999777788999999999999543221 2235888999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCC
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHE 494 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~ 494 (1101)
+++.+++++-|++|++|+..-++.+. ++.||...|...+|+|.... ++++++.|+++++|| ..|+.+. +..|.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ah~ 190 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEAHN 190 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEecc
Confidence 66777888999999999999887666 78999999999999998766 899999999999999 5666665 88899
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCceEEEEeCC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
..|.++.|+.. +...+++|+.|+.|++||++..+ ++.++.+|+-.|+.+.|||... .|++++. |-+++|||..
T Consensus 191 ~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~ 265 (311)
T KOG0277|consen 191 SEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPE 265 (311)
T ss_pred ceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccc
Confidence 99999999866 45799999999999999998754 4567888888999999999754 5677775 8899999998
Q ss_pred CCe-eEEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEEC
Q 001319 573 EGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 573 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+. .+.+...|.. .+..+.|++ ++.++++++-|+.++||+.
T Consensus 266 ~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 266 RQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 554 4455554444 677788876 5678999999999999984
No 108
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.3e-24 Score=244.10 Aligned_cols=249 Identities=16% Similarity=0.219 Sum_probs=200.0
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCccc----------ccceeeecccCcEEEEEEec-CCCceEEEEecC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~ 473 (1101)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3345666677778777777777777777776544322 22224779999999999999 777 8999999
Q ss_pred CceEEEEE-cCC-------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE
Q 001319 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 474 d~~v~iwd-~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1101)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567889999999999999853 36899999999999999999988888888889999999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCe-ee
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (1101)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999985 899999999999999999988765556678899888888765 47899999998754 33
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~ 661 (1101)
.....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333322 222455667899999999887 5999999999877
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.8e-25 Score=210.97 Aligned_cols=303 Identities=17% Similarity=0.202 Sum_probs=204.5
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcc-----cccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
.++++|.+.|++++||.||++||+++.|++|++|+++.-.. ++. .-.-+.-+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~----nve~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ----NVEYDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc----cccCCCceEEEECCCcce-EEEEEccC
Confidence 45999999999999999999999999999999999986322 221 111224678999999986 67777778
Q ss_pred ceEEEEE----cCCceeEE---------eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCce
Q 001319 475 KLIKVWE----LSGRKLFN---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1101)
Q Consensus 475 ~~v~iwd----~~~~~~~~---------~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 541 (1101)
.++++|. .+|..... -+.|+-.|..+-.. +++.+|++++.|..|.+|++. ++....+......-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 8999998 23332211 13456666666553 467899999999999999987 66666666555556
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
+..+.||+|+++++++. ..-|.+|. ++|..+|.+ .+...
T Consensus 232 ~~aavSP~GRFia~~gF----TpDVkVwE--------------------~~f~kdG~f-----------------qev~r 270 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGF----TPDVKVWE--------------------PIFTKDGTF-----------------QEVKR 270 (420)
T ss_pred cceeeCCCCcEEEEecC----CCCceEEE--------------------EEeccCcch-----------------hhhhh
Confidence 67777888888887765 33355554 334444321 12223
Q ss_pred eeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCc
Q 001319 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1101)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 701 (1101)
.+...+|...|..++|+++.+.+++.+.||++++||++-..+.- .|.+.|-.+
T Consensus 271 vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~---------------------qDpk~Lk~g------ 323 (420)
T KOG2096|consen 271 VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG---------------------QDPKILKEG------ 323 (420)
T ss_pred hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC---------------------CCchHhhcC------
Confidence 34445566789999999999999999999999999986431110 000111000
Q ss_pred ceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeec
Q 001319 702 KVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 781 (1101)
Q Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 781 (1101)
..+. ....+.-..+..+|.|+.+++ +....++++...+
T Consensus 324 ---------------------------~~pl-~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~------------- 361 (420)
T KOG2096|consen 324 ---------------------------SAPL-HAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASED------------- 361 (420)
T ss_pred ---------------------------Ccch-hhcCCCceEEEeCCCCcEEEe-ecCCceEEEEccc-------------
Confidence 0000 112233348899999985554 4445677765433
Q ss_pred cccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEE
Q 001319 782 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFN 831 (1101)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd 831 (1101)
|......-. .|...|.+++|+++|+++++++|..++++.
T Consensus 362 ---------g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 362 ---------GKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ---------CccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 221111111 289999999999999999999999998886
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-21 Score=215.72 Aligned_cols=277 Identities=16% Similarity=0.199 Sum_probs=225.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.|...-+.|+|.|+|. ++.+++.||.|++|+...-.... .++.-+...|.+++- ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEee--cccce
Confidence 5888899999999999 56788899999999987652211 123337778888876 45699
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
++|+.+++|.+|...+++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999887543 3455677899999999999 899999999999999 8888899999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--------CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
.++| ++.+|++.+-||.|++||+.++.....+..- ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9977 6689999999999999999988776554332 235678999999776666654 8899999999
Q ss_pred CCeeEEEecccCCcc-eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 573 EGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
+......+....... +..++|+|.|.||++++.||.|.|||..+... +.....|.+++|.|+.+.+-.....|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 999988887654433 88899999999999999999999999988222 33345799999999988776666555
Q ss_pred cEEEE
Q 001319 652 GFKIL 656 (1101)
Q Consensus 652 ~i~iw 656 (1101)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55544
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.7e-26 Score=222.35 Aligned_cols=285 Identities=16% Similarity=0.214 Sum_probs=225.3
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.|.||.+.|.+++=.|..-. .++||+.||.|++|| .+..++.++..|.+.|..+++.. ..+++++.|++|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 699999999999999 77888999999999999999865 4688999999999998
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE-EEE
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAV 603 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 603 (1101)
++.. ...++. ....+..+..+..+..+++||. .|.|||.....++..+.-..+ .+.++.|+|....+ +++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 8763 333332 2334566777777788888864 599999998889988887665 78999999977655 456
Q ss_pred eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceee
Q 001319 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1101)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1101)
+.|+.|.+||++.+.++..+.... .-+.++|+|++-.+++|+.|..++.+|+......+....
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------------- 269 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------------- 269 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhc--------------
Confidence 699999999999999888775543 358899999988999999999999999865422111110
Q ss_pred eeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEE
Q 001319 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 763 (1101)
Q Consensus 684 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~ 763 (1101)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEee
Q 001319 764 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 764 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 842 (1101)
+|.+.|.++.|||.|+-+++|+ |.+|+||....+.....+.
T Consensus 270 --------------------------------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 270 --------------------------------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred --------------------------------------ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 2677788888888888888887 8888888887665443332
Q ss_pred C-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 843 S-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 843 ~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
. .-..|.|+.||. |.+++++|+.|+.|++|.....+.
T Consensus 312 tkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred HhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhh
Confidence 1 224699999999 999999999999999999775443
No 112
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-22 Score=223.73 Aligned_cols=567 Identities=13% Similarity=0.134 Sum_probs=351.5
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCc-eEEEEecCCceEEEEE-c
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~-~~l~s~~~d~~v~iwd-~ 482 (1101)
-...-....||+|+++++.+..+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|| .
T Consensus 15 ~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred ccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33334455799999999877654 69999999999988 78899999999999987663 4788999999999999 8
Q ss_pred CCceeEEeecCCcCeEEEecccC--CCccEEEEeccCCe------------EEEEecCCCCee-eeccCCCCceEEEEEc
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHK--ENIQFIFSTAIDGK------------IKAWLYDTMGSR-VDYDAPGHWCTTMLYS 547 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~--~~~~~l~s~~~d~~------------i~~wd~~~~~~~-~~~~~~~~~v~~~~~s 547 (1101)
.+..+.++..+.. +..+.+.+. .....+..+..|.. ++-+.+.+.... ..+......-.++.++
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 8888888764432 333322110 01011112222221 111111111100 0000011114678888
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCee---EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEe
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTS 622 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~ 622 (1101)
+.|.+...+. +..+.+|+..++.. .+....++...+.+.+++|.+++++++..||+|.+|.--. +.....
T Consensus 170 ~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred CCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 8888877765 56788998887551 1112223333578899999999999999999999996433 333222
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 702 (1101)
...|-|...|.+++|+++|.+|.+|+..+.+.+|.++++.+.+ +
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L---------------------------------- 288 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L---------------------------------- 288 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--c----------------------------------
Confidence 2334445589999999999999999999999999998873211 1
Q ss_pred eeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 703 VERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
..-.+.|..+.++||+........|+.+.+-......... +
T Consensus 289 -------------------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------t 329 (792)
T KOG1963|consen 289 -------------------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------T 329 (792)
T ss_pred -------------------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------h
Confidence 1145678888999999988888889888887653221100 0
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE-EcCCeEEEEECCCceEEEEeeC-----CC------CCeeE
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS-ATGGKISLFNMMTFKVMTTFMS-----PP------PASTF 850 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~dg~i~vwd~~~~~~~~~~~~-----~~------~~i~~ 850 (1101)
+.-..+.+... .....+-.+.++++|.-+.++. +-.|.|.+||+.+-+.+..+.. +. -.+++
T Consensus 330 Isgi~~~~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 330 ISGIKPPTPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred ccCccCCCccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 00000000000 0014455677888884444444 4489999999987766555431 12 24778
Q ss_pred EEEecCCCCEEEEEe--------CCC--cEEEEEeecceE----EE-eeccCCCCeeEEEEcCCC--CEEEEEeCCCcEE
Q 001319 851 LAFHPQDNNIIAIGT--------EDS--TIHIYNVRVDEV----KS-KLKGHQKRITGLAFSTSL--NILVSSGADAQLC 913 (1101)
Q Consensus 851 l~~s~~~~~~la~g~--------~dg--~v~iwd~~~~~~----~~-~~~~h~~~V~~l~~s~d~--~~l~s~s~Dg~v~ 913 (1101)
++.+. .|.+++++- .|| .+++|-...... .. ....|...+...++.+.. ..+++++.||.++
T Consensus 404 v~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 404 VARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred ehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 88888 688998874 233 577887765432 22 235788777777665432 3799999999999
Q ss_pred EEECCCCccccc----eEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc
Q 001319 914 VWSIDTWEKRKS----VTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 989 (1101)
Q Consensus 914 lwd~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s 989 (1101)
+|-+...+.... .............+.+++|+.||..|+++.++.|.+||..+........... ..++..+.|.
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~ 560 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR--NWPIAELLFT 560 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc--ccchHhHhhh
Confidence 999844332211 1111111123378999999999999999999999999999843222222211 3344444443
Q ss_pred cCCC--EEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC----cccCCCCccceE---EEEEecCCCCEEE--------E
Q 001319 990 CNSQ--LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP----SVLNGSQTVYPL---VVAAHPLEPNQFA--------I 1052 (1101)
Q Consensus 990 ~dg~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~~~~~---~l~~~p~d~~~l~--------s 1052 (1101)
.... ..+.....+.+.+|++-++.+.-.+........ ......+.+..+ -+.|.| ..+. .
T Consensus 561 ~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~~~~~k~~~~~f 637 (792)
T KOG1963|consen 561 AQTQNDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---ELLLVVKSIEQIF 637 (792)
T ss_pred cccccccceeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cchhhhhhhhhhc
Confidence 3211 123344577899999998877653221111111 000011111111 233444 2333 7
Q ss_pred EECCCeEEEEeCCCCC
Q 001319 1053 GLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1053 ~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.|+.+.+|+.+..+
T Consensus 638 ~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 638 RGRDSRILIFSGDSPK 653 (792)
T ss_pred ccccceEEEecCCCch
Confidence 7888888888887766
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.9e-25 Score=211.72 Aligned_cols=294 Identities=13% Similarity=0.171 Sum_probs=239.7
Q ss_pred eeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
+.+.+ ||++.||.|+...... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+++|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFH 199 (481)
T ss_pred ehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEec
Confidence 33444 5999999999887766 889999999999999999999873 88999999999999
Q ss_pred cCCCEEEEEECCCeEEEEeec------C--------C-----------------------cccccceeeecccCcEEEEE
Q 001319 416 PDGNYVGVAFTKHLIQLYSYA------G--------S-----------------------NDLRQHSQIDAHVGAVNDLA 458 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~------~--------~-----------------------~~~~~~~~l~~h~~~V~~l~ 458 (1101)
+.+.++++++.|++..||... . + ....++..+.+|.+.|.++.
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 999999999999999999721 0 0 00113446889999999999
Q ss_pred EecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC-eeeeccC
Q 001319 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDA 536 (1101)
Q Consensus 459 ~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~ 536 (1101)
|...|+ -+++++.|++..+|| .+|..+..+.||....+.++-+|. .+++++.+.|.+.++||++..- ....+.+
T Consensus 280 WL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 280 WLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred hhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999 699999999999999 999999999999999999998884 4899999999999999998533 3457889
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
|...|++..|..+.+ +++++. |.+|++||+++.+ ++.++... ..++.++++..++.++.--.+..|++||++
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred cccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecC
Confidence 999999999987764 666664 8899999998754 45555543 267888898877788888889999999997
Q ss_pred CCeeeEee--ccCCCCCCCCeeEEecCC--CEEEEEEcCCcEEEEEcccc
Q 001319 616 NVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 616 ~~~~~~~~--~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~i~iwd~~~~ 661 (1101)
...+...- ...++...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 429 G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 429 GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 65443221 233455578999998654 45788999999999998754
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.7e-24 Score=206.64 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=204.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+..|.+.|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|++||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 477899999999985 9999999999999999999987666 67789999999999998743359999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ -.-.++.++++|.+.|+.++++|+ +++.++.+.|+.+++||+-.++.-+....... -+.+.|+|.|.+++.++
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 777889999999999999999995 48899999999999999998887766554433 34599999999888876
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE--
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-- 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 637 (1101)
...|-+|.+++......+.... .+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. +|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 5679999998877666655431 34445553 567999999999999999999888888877654 8888874
Q ss_pred ecCCCEEEEEEcCCcEEEEEcccc
Q 001319 638 SKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 457889999999999999999765
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=9.2e-26 Score=221.38 Aligned_cols=283 Identities=14% Similarity=0.194 Sum_probs=229.2
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
-||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+..+.. ++..|.+.|..+++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--cc
Confidence 47999999999999874467999999999999998877665 4888999999999987 77
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
+++++.|.+|+.|.++.. ..+ ++-+ ...+..+.-...+. .++|||. .|.||| ....++..+.-....|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 222 3333 34466676666666 6888876 488999 788889998888888999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC-eeEE
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKR 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~ 578 (1101)
+.|+|... .+|++++.|+.|.+||++.......+.. ....+.++|+|.+-.++++. .|..++.+|++.- +++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99998754 6888999999999999999887765442 23467899999665555654 4889999998764 5667
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.+.+|.. .+..+.|+|.|+.+++|+.|.+|+||..+.+.....+... ....|.|+.||.|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7777776 7888999999999999999999999999877654444322 2346899999999999999999999999987
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 543
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8.7e-24 Score=204.14 Aligned_cols=268 Identities=17% Similarity=0.261 Sum_probs=213.2
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+.|..|.|+|.+..||| ++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LLv-ssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLV-SSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEEE-EeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4678999999999887755 5699999999998764332 334889999999986 66788
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++|| ........+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 678999999999998777 799999999999999 5444444443 334788887
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC----e
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----T 575 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~ 575 (1101)
. .|+.|+.|+.|..+.+||+++.......... .-.++++++-|++.-.++++- +|.|.+=.++.. +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 6 3468999999999999999988776633222 236899999998887777765 677766554443 3
Q ss_pred eEEEecccCC--------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 576 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
....|+.|.. .+|+.++|+|--+.|++||.||.|.+||+.+.+.+..+... ...|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4455665543 25788999999999999999999999999999888887654 3368999999999999998
Q ss_pred Ec
Q 001319 648 TA 649 (1101)
Q Consensus 648 ~~ 649 (1101)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.2e-25 Score=204.60 Aligned_cols=252 Identities=20% Similarity=0.302 Sum_probs=207.8
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec--CCCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~ 478 (1101)
+...|.+.|..+...--|+.||+|+.|++|+|+.+........+.+|.||.++|+.++|.. -|. +|+|++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4667999999988888899999999999999999998776667779999999999999987 577 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC---eeeeccCCCCceEEEEEccC---
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSAD--- 549 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~d--- 549 (1101)
||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 6664 34566789999999999999999999999999999999988762 22344567778999999986
Q ss_pred C-----------CEEEEeecCCCCCceEEEEeCCCCe--eEEEecccCCcceEEEEEeCCC----CEEEEEeCCCcEEEE
Q 001319 550 G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1101)
Q Consensus 550 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iw 612 (1101)
| +.|++++. |..|+||+...++ ..+++.+|.+ .+..++|.|.- .++++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56899886 8999999988763 4456888887 88999999964 579999999999999
Q ss_pred ECCCC-eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
..... +.-.....+.-...+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 111111112223468999999999999999999999999754
No 118
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=5.4e-24 Score=213.91 Aligned_cols=283 Identities=15% Similarity=0.250 Sum_probs=240.5
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...|.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||. ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeeccccc
Confidence 3468888888888899999999999999999988777 7899999999999999998 799999999999999 666
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
.+......|..+|+.+..++ .|.||++++.|++..+.|++++......... .-.+++.+|+|||..+.+|..
T Consensus 294 s~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---- 367 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---- 367 (506)
T ss_pred cCccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----
Confidence 67778889999999999988 5689999999999999999999887766553 336899999999999999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
|+.|++||+.++.....|.+|.+ .|..++|+.+|-+++++++|+.|++||++..+...++...... .|.++.|.+.|.
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCC
Confidence 99999999999999999999887 8999999999999999999999999999999888888776654 789999999999
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
+|+.++.+=.|++++-.+. .+..+.
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k--~W~~~~----------------------------------------------------- 470 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTK--SWTEIK----------------------------------------------------- 470 (506)
T ss_pred eEEeecceeEEEEEecccc--cceeee-----------------------------------------------------
Confidence 9999977666655543222 111110
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+ ..|.+..+.+.|.....++++++.|..++++.
T Consensus 471 ------~~---~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 471 ------EL---ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ------hh---hhcccccceeeecccceEEeeccchhheEEee
Confidence 01 22566778888888889899999888877764
No 119
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.9e-23 Score=235.02 Aligned_cols=251 Identities=15% Similarity=0.215 Sum_probs=191.9
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE-cCCc--------eeEEeecC
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd-~~~~--------~~~~~~~h 493 (1101)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|+||+.|++|+||| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567889999998765433 368899999999999997 56 899999999999999 4432 34567899
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998532 356799999999999999988776665 4567999999999999998875 88999999999
Q ss_pred CeeEEEecccCCcce----EEEEEeCCCCEEEEEeCCC----cEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 574 GTIKRTYAGFRKKSN----GVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
++.+..+.+|.+... ....|+++++++++++.|+ .|++||++. ++.+.....+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 999999999876321 2234568899999988764 799999985 5666665554443333333345568899
Q ss_pred EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccc
Q 001319 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
++|+.|+.|++|++..+. +..+.. .....+...++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeecc---cccCCCccceEEccccc
Confidence 999999999999997651 222221 11345566778877654
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-24 Score=207.04 Aligned_cols=323 Identities=15% Similarity=0.259 Sum_probs=236.5
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+.||.+.|+.++-..... ++.+++.|.+.+||. .+|+|+.++.||.+.|++|.|++ .+.++++++.|++-.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecc--ccceEEEccCCcchHHHH
Confidence 6889999999999876555 899999999999999 99999999999999999999988 457999999999999996
Q ss_pred cCCCCeeeec---cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEE
Q 001319 525 YDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1101)
Q Consensus 525 ~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1101)
..-.-+...- ..|... ..+.-+...... .++..+.=...-..++..+.+|.. .+.+..|-..|+.++
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d--------~d~~~~sD~~tiRvPl~~ltgH~~-vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRD--------TDSSEKSDGHTIRVPLMRLTGHRA-VVSACDWLAGGQQMV 288 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhcccccccc--------cccccccCCceeeeeeeeeecccc-ceEehhhhcCcceee
Confidence 3211110000 000000 000000000000 011111000011235667888877 788888888999999
Q ss_pred EEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcce
Q 001319 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (1101)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 681 (1101)
+++.|.+..+||+++++++..+.+|.+ ..+.++-+|..+++++.+.|.+.++||+......+..++
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ------------ 354 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ------------ 354 (481)
T ss_pred eeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeec------------
Confidence 999999999999999999999988766 688899999999999999999999999864311111111
Q ss_pred eeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeE
Q 001319 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 761 (1101)
Q Consensus 682 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 761 (1101)
T Consensus 355 -------------------------------------------------------------------------------- 354 (481)
T KOG0300|consen 355 -------------------------------------------------------------------------------- 354 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCce-EEE
Q 001319 762 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK-VMT 839 (1101)
Q Consensus 762 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~-~~~ 839 (1101)
+|.+.|+++.|..|.+ +++|+ |.+|+|||+.+.. ++.
T Consensus 355 ----------------------------------------GHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 355 ----------------------------------------GHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred ----------------------------------------ccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcce
Confidence 3777777777776654 44554 6778888887654 344
Q ss_pred EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE----eeccCCCCeeEEEEcCCC--CEEEEEeCCCcEE
Q 001319 840 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGHQKRITGLAFSTSL--NILVSSGADAQLC 913 (1101)
Q Consensus 840 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~----~~~~h~~~V~~l~~s~d~--~~l~s~s~Dg~v~ 913 (1101)
++.. ..++..++.+. ++.++|.--.+..|++||+....+-+ .-++|..-|.|++|..+. .-|+++|.|..+.
T Consensus 394 TIRt-dS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 394 TIRT-DSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred eeec-CCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 5543 66788999998 88899999999999999997554322 235899999999998653 3688999999999
Q ss_pred EEECCC
Q 001319 914 VWSIDT 919 (1101)
Q Consensus 914 lwd~~~ 919 (1101)
-|.+..
T Consensus 472 gW~in~ 477 (481)
T KOG0300|consen 472 GWKINT 477 (481)
T ss_pred eeEecc
Confidence 999876
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8e-24 Score=203.16 Aligned_cols=247 Identities=15% Similarity=0.178 Sum_probs=193.7
Q ss_pred ccCCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCC-cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 403 KDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 403 ~~h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
...++.|.+++||| ...++++|+-|++||+|+++.. .... +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 34678999999999 5556668899999999999873 3322 24568999999999999998 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .++ .+..+..|.++|..+.|.+...-..|++|+.|++|++||.+.......+..++. +.++..- ...++++..
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA- 174 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec-
Confidence 9 566 677888899999999998776666899999999999999999888887776654 4444332 234444443
Q ss_pred CCCCceEEEEeCCCCeeE-EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEeeccCCC-------C
Q 001319 560 KDGDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGG-------L 629 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~ 629 (1101)
+..|.+|+++.+... +.....-...+.+++...+....+.|+-+|.+.|..+..+ +.-..+..|.. .
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 778999999765432 3333333446888999999888899999999999998876 33333443332 3
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
-.|++++|+|....|++++.||++.+||-...
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhh
Confidence 35788999999999999999999999997655
No 122
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.2e-22 Score=218.58 Aligned_cols=518 Identities=16% Similarity=0.219 Sum_probs=332.8
Q ss_pred EEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCc-cEEEEeccCCeEEEEecCCCCee
Q 001319 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 454 V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~ 531 (1101)
-..-.|++|++. ++.+ .+..|.||. .+|.++..+.+|..++..+.+.+.... .++++++.||.|++||...+...
T Consensus 19 ~~~avfSnD~k~--l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 19 KSPAVFSNDAKF--LFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred ecccccccCCcE--EEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 344579999994 4433 367899999 999999999999999999999887654 67889999999999999988887
Q ss_pred eeccCCCCceEEEEEcc----CCCEEEEeecC--------CCCCceEEEEeCCCC--eeEEEecccCCcceEEEEEeCCC
Q 001319 532 VDYDAPGHWCTTMLYSA----DGSRLFSCGTS--------KDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 532 ~~~~~~~~~v~~~~~s~----d~~~l~~~~~~--------~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 597 (1101)
..+..+.. +..+.+.| ....+.....+ .+-.++++-+.+.+. ........+. ...++.+++.|
T Consensus 96 kt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~g 172 (792)
T KOG1963|consen 96 KTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSG 172 (792)
T ss_pred EEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCc
Confidence 76654433 33333321 11111111100 000111111111110 0000111111 13457788877
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEe--eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 675 (1101)
.+....- +..+.+|...++..... -....|...+++.++||++++++++..||.|.+|.--... .
T Consensus 173 e~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------~----- 239 (792)
T KOG1963|consen 173 EFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------D----- 239 (792)
T ss_pred eEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-------c-----
Confidence 6655544 45788898887541111 1111233357899999999999999999999999743210 0
Q ss_pred ccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEe
Q 001319 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 755 (1101)
Q Consensus 676 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 755 (1101)
+...++.+.. |...|.+++|+++|.++++|
T Consensus 240 ---------------------------------------------~~~t~t~lHW-----H~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 240 ---------------------------------------------DSETCTLLHW-----HHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred ---------------------------------------------ccccceEEEe-----cccccceeEEecCCceEeec
Confidence 0011111111 78899999999999999999
Q ss_pred ecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCC
Q 001319 756 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 834 (1101)
Q Consensus 756 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 834 (1101)
+.+|.+.+|.+.+.++. .++ ....+|..+.+|||+.+.+... |+.|.+....+
T Consensus 270 G~E~VLv~Wq~~T~~kq------------------------fLP--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQ------------------------FLP--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ccceEEEEEeecCCCcc------------------------ccc--ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 99999999987654321 112 1678899999999999887765 99999998877
Q ss_pred ceEEEEeeCCC-----------CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec-----------cCCCCee
Q 001319 835 FKVMTTFMSPP-----------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-----------GHQKRIT 892 (1101)
Q Consensus 835 ~~~~~~~~~~~-----------~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-----------~h~~~V~ 892 (1101)
.....++.+.. +-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+. .+.-.|+
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 66655554422 2366788998 67778888899999999999876665442 1233578
Q ss_pred EEEEcCCCCEEEEEe--------CCC--cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC-EEEE-EeCCeEE
Q 001319 893 GLAFSTSLNILVSSG--------ADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV-RMLV-VHETQLA 960 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s--------~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~-~~d~~i~ 960 (1101)
+++.+..|.+++|.- .|| .+++|-.......-.........|....+..+..++... .+++ +.|+.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 888888899999874 233 488998877665544444455555534444444444443 4555 5699999
Q ss_pred EEEcCCceeeeE-------eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeEeeCCCCcCCCcccCCC
Q 001319 961 IYDASKMERIRQ-------WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGS 1032 (1101)
Q Consensus 961 v~d~~~~~~~~~-------~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~ 1032 (1101)
||-+...+.+.. ...+..|..++++.+||.||..|+.+ .|++|.+||..+ .++.+......+.. .
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~------~ 555 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPI------A 555 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccch------H
Confidence 998843322211 11122458999999999999766655 588999999999 55555554333221 1
Q ss_pred CccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCcc--ccCCCCCC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW--GVSPPVDN 1079 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~--~~~~~~~~ 1079 (1101)
+... .+=.+ ....+....-+.+.+|++.+..-.| ....-+++
T Consensus 556 ~~~~---~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~ 599 (792)
T KOG1963|consen 556 ELLF---TAQTQ--NDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEG 599 (792)
T ss_pred hHhh---hcccc--cccceeeccCceEehHhhhhhheecchhhhhhhhc
Confidence 1111 11011 1223344456889999999988777 44444444
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=2.5e-24 Score=219.50 Aligned_cols=291 Identities=14% Similarity=0.205 Sum_probs=232.5
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+.++.|++-|.++.+|...+++ .||+ .|.|+|||+...... .+....-.....+.|.++..+|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhV-yTgG-kgcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHV-YTGG-KGCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred hhhhhccCcEEEEEEecCCccee-EecC-CCeEEEeeccCCCCC--------------CccccccccCcccceeeeEecC
Confidence 34678899999999999999875 6775 578999999653211 1111111222467899999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
||+.|++|+.-.++.|||+.+.... ...++..-.-...+++.+||.+ +.++|..||.|.||| .+...++.|.||.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 9999999999999999999875432 2224444455688899999999 899999999999999 78888999999999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.+.||.++. ||..|.+|+.|.+||.||++.+........ ...|.++.++|++.++++|-. ++.+.+.... +.
T Consensus 553 GascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp 624 (705)
T KOG0639|consen 553 GASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KP 624 (705)
T ss_pred CceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cc
Confidence 999999976 778999999999999999998877655443 345999999999999999975 6666665543 33
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
....+..|.. .|-++.|.+-|+++++.|.|+.+..|...-|..+...+. ...|.++.+|.|.+++++|+.|....+
T Consensus 625 ~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 625 EKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEE
Confidence 3344444444 788899999999999999999999999998887766543 347999999999999999999998888
Q ss_pred EEc
Q 001319 656 LAN 658 (1101)
Q Consensus 656 wd~ 658 (1101)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 865
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=200.44 Aligned_cols=298 Identities=13% Similarity=0.155 Sum_probs=223.9
Q ss_pred CCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
..|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...- +++.+|..+|++
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 56777888888776 99999999998 5699999999999999886532 358999999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 491 (1101)
++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-.++ .++++-.+..-.+-+.....-..+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCC-eEEEEEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999977643 35789999999998776 3444333444444442221111111
Q ss_pred cC-Cc--CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 492 GH-EA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 492 ~h-~~--~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
.. .+ .+..-+-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++..+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 11 11 1111111234567999999999999999999998887766655 67999999999999999886 89999
Q ss_pred EEeCCCC-------ee--EEEeccc-CCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 568 EWNESEG-------TI--KRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 568 iwd~~~~-------~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
.|+++.- +. .+++..- ......+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9987621 11 1122110 112345689999999998876 4567999999999999999776533 567899
Q ss_pred EecCCCEEEEEEcCCcEEEEEcccc
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988888777 6799999987644
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=213.92 Aligned_cols=264 Identities=14% Similarity=0.244 Sum_probs=213.5
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
....+.|.++|+.+.+-|....++|+++..+.|.|||+.+-.-.... . ..-.+...+.||...=++++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------~--~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------S--GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------c--ccCCCceEEEeeccccccccccc
Confidence 44556799999999999999999999999999999998764332210 0 01112346899999888999999
Q ss_pred C-CCEEEEEECCCeEEEEeecCCcc----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--CCceeE
Q 001319 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1101)
Q Consensus 417 d-g~~las~~~d~~i~vwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~--~~~~~~ 488 (1101)
. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 4 55889999999999999975443 5555678899999999999998776 899999999999999 6 566677
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEE-EEeecCCCCCceE
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFL 566 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i 566 (1101)
...+|.++|.+++|+|-. +.+||+|+.|++|++||+++... ...+.+|...|..+.|||....+ ++++. |+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcE
Confidence 888999999999999874 57999999999999999998654 56788999999999999987655 45543 8999
Q ss_pred EEEeCCCC--------------eeEEEecccCCcceEEEEEeCCCCEEEE-EeCCCcEEEEECCC
Q 001319 567 VEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1101)
Q Consensus 567 ~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1101)
.+||+..- +++..-.||.. .|..+.|+|...++++ .++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998642 22345556666 7888999999877655 77999999999863
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.2e-23 Score=220.74 Aligned_cols=278 Identities=15% Similarity=0.212 Sum_probs=221.0
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE-EEe
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC-IAL 812 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~ 812 (1101)
.+|...|..+++.+.. .+++++.||++++|+-..... +-...+. ++.+.|.+ +++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~--~~~g~i~~~i~y 66 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFE--GPKGFIANSICY 66 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecc--cCcceeecccee
Confidence 5688888888876655 589999999999997322110 0001111 25555555 676
Q ss_pred cC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC
Q 001319 813 SK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 890 (1101)
Q Consensus 813 s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 890 (1101)
-+ ++-.+++|+ |..|.+|...+..+...+.+|...|.++.... ++. +++|+.|.++++|.. +++...+++|+..
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 64 444466666 99999999999999999999999999999877 555 889999999999976 5666779999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceee
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI 970 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~ 970 (1101)
|++++.-|++ .++||+.|++|++|.-.+ .++.+.+|. ..|+.+++-+++.++.++.||.|++|++ +|+++
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt-D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT-DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch-hheeeeEEecCCCeEeecCCceEEEEec-cCcee
Confidence 9999999997 889999999999999754 445566766 8999999999999999999999999999 78888
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
....+| ..-|.++....++..++++++|++++||+.. ++...+.. .. ..+.++.+-+ ..-+
T Consensus 213 ~~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-----------Pt-tsiWsa~~L~--NgDI 273 (745)
T KOG0301|consen 213 LEMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-----------PT-TSIWSAKVLL--NGDI 273 (745)
T ss_pred eeeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-----------Cc-cceEEEEEee--CCCE
Confidence 777665 8899999999999999999999999999987 66666652 11 2334565555 3458
Q ss_pred EEEECCCeEEEEeCCCCC
Q 001319 1051 AIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1051 ~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++|+.||.|+||.....+
T Consensus 274 vvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEeccCceEEEEEecccc
Confidence 999999999999987433
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=209.58 Aligned_cols=287 Identities=12% Similarity=0.217 Sum_probs=234.1
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC-EEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~la 422 (1101)
.+.|++|.|+|.-. +|.+|+.|++++||.++....... +. +.-...+|.+++|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS--~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QS--IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------ee--eeeccCccceeeecCCCceEEE
Confidence 56899999999987 678889999999999975433221 11 222356899999999999 899
Q ss_pred EEECCCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
+++.......||+.+++..+ +..+.++. ..+.....+++++ +|+..|..|.|.+-. .++..+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999987543 22344554 4678889999999 899999999999999 8888888877 57789999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC-ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC------
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------ 573 (1101)
+|+. +++.|++++.+|.|.+||++...+...+...+. .-+++|.|++|.++|+|+. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 678999999999999999999988877766554 5678999999999999985 89999999653
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCC-CCCCCCeeEEecCCCEEEEEEcC
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+++..+..... .|+.+.|+++...|+.++ .+..+++-.+.+......++... ....|+|++|||.|.+|++|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 455555555444 688999999999998877 67789999998877776665442 34578999999999999999999
Q ss_pred CcEEEEEcc
Q 001319 651 NGFKILANA 659 (1101)
Q Consensus 651 ~~i~iwd~~ 659 (1101)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.2e-23 Score=209.60 Aligned_cols=223 Identities=15% Similarity=0.179 Sum_probs=193.1
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-- 482 (1101)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|+ .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 5689999999999999999999999999999999887 5779999999999999999 899999999999998 2
Q ss_pred -------CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 483 -------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+-++++.|..|.-+|+++...+.+...+|+++|.|.++++||+..+.....+..+ ..+.+++++|-++.++.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356788999999999999887766689999999999999999998887776644 45899999999999999
Q ss_pred eecCCCCCceEEEEeCCC----------------CeeEEEecccCC-cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
|+. +|.|.+.++.. +..+..+.||.+ ..|+|++++-||..|++|+.||+|+|||+.+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 88888876542 234566777776 579999999999999999999999999999999
Q ss_pred eeEeeccCCCCCCCCeeEEecC
Q 001319 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 99888743 337888888664
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.6e-23 Score=212.21 Aligned_cols=283 Identities=13% Similarity=0.179 Sum_probs=229.0
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
.|..-|..+.++...+.+++++. |.|+|||+...... . ....+........|+++.+.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-----~---------------PvsqLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-----S---------------PVSQLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-----C---------------ccccccccCcccceeeeEecC
Confidence 47888889999999998888775 68999998643110 0 000111123667899999999
Q ss_pred CCCeEEEEc-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
||+.|++|+ ..++.|||+..-.. ..++........+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999998 57899999975443 344444445688899999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI 970 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~ 970 (1101)
.||.+++||..|-||+-|.+||-||+..+.+.....+. ..|.++..+|.+.++++|- ++.+.|......+..
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-------SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-------hhheecccCCCccceeeecccCcEEEEecCCccce
Confidence 99999999999999999999999999998765544333 6788999999999999985 778888887655433
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
.+. -|.+.|.++.|++-|+|+++.+.|.-+-.|...-|..+.... ....|+++..+. |+.++
T Consensus 628 -qlh---lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-------------E~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 628 -QLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISF-DDKYI 689 (705)
T ss_pred -eec---ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-------------ccCcceeeeecc-CceEE
Confidence 232 348999999999999999999999999999999887665543 233567787777 79999
Q ss_pred EEEECCCeEEEEeC
Q 001319 1051 AIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1051 ~s~~~Dg~v~iWd~ 1064 (1101)
|||+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888875
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.5e-23 Score=208.87 Aligned_cols=301 Identities=18% Similarity=0.248 Sum_probs=224.1
Q ss_pred EeccC-CeEEEEecCCCCeeeeccCCCC-ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEE
Q 001319 513 STAID-GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1101)
Q Consensus 513 s~~~d-~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 590 (1101)
+++.| ..+.+||++++.....+.+... .-.++.. -.+.+++++.. +...|.+|.+..........-..+ .+.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~---~rp~l~vw~i~k~~~~~q~~v~Pg-~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL---KRPLLHVWEILKKDQVVQYIVLPG-PVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc---cCccccccccCchhhhhhhccccc-ceee
Confidence 33444 4589999999999988876522 1111111 13467777654 356899999876554442222222 7889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccC
Q 001319 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1101)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 670 (1101)
++-+|.|.+|+.|+..|.|++|.+.+|.++..+..| ...|+|+.|+-||.+|++|+.||.|.+|.+..... ....
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~---a~~~ 161 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS---ADND 161 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc---cccC
Confidence 999999999999999999999999999999998655 56899999999999999999999999998753210 0000
Q ss_pred CCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc
Q 001319 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750 (1101)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 750 (1101)
+
T Consensus 162 -----------------------------------------------------------------~-------------- 162 (476)
T KOG0646|consen 162 -----------------------------------------------------------------H-------------- 162 (476)
T ss_pred -----------------------------------------------------------------C--------------
Confidence 0
Q ss_pred cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC--CCeEEEEc-CCeE
Q 001319 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSAT-GGKI 827 (1101)
Q Consensus 751 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~-dg~i 827 (1101)
.-.-++.|. .|.-+|+.+...+. ..++++++ |.++
T Consensus 163 ------~~~p~~~f~------------------------------------~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 163 ------SVKPLHIFS------------------------------------DHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ------Cccceeeec------------------------------------cCcceeEEEEecCCCccceEEEecCCceE
Confidence 000111121 27777777776654 34677777 9999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc----------------eEEEeeccCCC--
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----------------EVKSKLKGHQK-- 889 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~----------------~~~~~~~~h~~-- 889 (1101)
++||+..+.++.++.- +..+.+++.+| .++.+.+|+++|.|.+.++..- ..+..+.||.+
T Consensus 201 k~wdlS~g~LLlti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEEeccceeeEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 9999999998888764 67899999999 8999999999999999887532 34566789998
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 890 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 890 ~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
+|+|++++-||..|++|+.||.|+|||+.+.+++++.... .++|+.+.+.|-.+-..
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~------kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS------KGPVTNLQINPLERGII 335 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh------ccccceeEeecccccee
Confidence 9999999999999999999999999999998877655421 17888888866544333
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=205.29 Aligned_cols=289 Identities=16% Similarity=0.232 Sum_probs=228.8
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEcccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
.|+++.|+|....++++|.||.++||.+.. ...++.+... ..+|.+..|.|+|. .+++++....++.||+.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 699999999999999999999999998864 3345555444 34899999999999 888899999999999976511
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
..+.. +
T Consensus 293 --~k~~~------------------------------------------------------------~------------ 298 (514)
T KOG2055|consen 293 --TKLKP------------------------------------------------------------P------------ 298 (514)
T ss_pred --ccccC------------------------------------------------------------C------------
Confidence 00000 0
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 823 (1101)
.| .....+....+||++++|+..+
T Consensus 299 ----~g----------------------------------------------------~e~~~~e~FeVShd~~fia~~G 322 (514)
T KOG2055|consen 299 ----YG----------------------------------------------------VEEKSMERFEVSHDSNFIAIAG 322 (514)
T ss_pred ----CC----------------------------------------------------cccchhheeEecCCCCeEEEcc
Confidence 00 0123355678899999999888
Q ss_pred -CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC-CeeEEEEcCCCC
Q 001319 824 -GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLN 901 (1101)
Q Consensus 824 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~V~~l~~s~d~~ 901 (1101)
.|.|.+....+++.+..++. .+.|..++|+. +++.|.+.+.+|.|++||+....++.++....+ .-+.++.|+++.
T Consensus 323 ~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS 400 (514)
T ss_pred cCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc
Confidence 79999999999999988875 67899999998 888888888999999999999999988863322 236778889999
Q ss_pred EEEEEeCCCcEEEEECCCCcccc-ceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CCeEEEEEcCCceeeeEeccCC
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRK-SVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERIRQWTPQD 977 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~~~~~~~~~~ 977 (1101)
+||+|+..|.|.|||..+...-. ..++.....- ...|+.+.|++|+..||+++ ...+++-.+.+......|+...
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 99999999999999976522111 1111111111 16899999999999999854 6789999999999988888876
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
..-+.|+|++|||.|.++|.|..+|.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 667889999999999999999999999999874
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3e-22 Score=220.43 Aligned_cols=281 Identities=18% Similarity=0.211 Sum_probs=218.8
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
..|....+.++|.++|..|++++.||.|++|+.......|.. +. .+...|.+++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t----------------------i~--~~g~~v~~ia~- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET----------------------ID--ISGELVSSIAC- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch----------------------hh--ccCceeEEEee-
Confidence 347888999999999999999999999999986533211110 00 14556666665
Q ss_pred CCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCee
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 892 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 892 (1101)
++..+++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|+.|-.|++-++.+......+++|.++|.
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 444777777 89999999988876555554566899999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC--CCCcceEEEcCCCCEEE-EEeCCeEEEEEcCCcee
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT--PTGDTRVQFNADQVRML-VVHETQLAIYDASKMER 969 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~-~~~d~~i~v~d~~~~~~ 969 (1101)
+|.|+|.+++||+.+-||+|++||++++.+......-...-.. ...+..++|+|+|..++ .+.|+.|.+|+..+++.
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999999999999999999999998876654322221111 25677899999955555 57899999999999999
Q ss_pred eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 970 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 970 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
...+..... ...+..+.|||+|+|||+++.||.|.|||.++-+. |.....+.+++|.|+ .+-
T Consensus 223 ~f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----------------~~~~~~Vc~~aw~p~-~n~ 284 (933)
T KOG1274|consen 223 QFKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----------------HEFKRAVCCEAWKPN-ANA 284 (933)
T ss_pred heeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----------------ccccceeEEEecCCC-CCe
Confidence 888877543 44499999999999999999999999999998222 333445678888885 443
Q ss_pred EEEEECCCeE
Q 001319 1050 FAIGLTDGSV 1059 (1101)
Q Consensus 1050 l~s~~~Dg~v 1059 (1101)
+-.-..-|..
T Consensus 285 it~~~~~g~~ 294 (933)
T KOG1274|consen 285 ITLITALGTL 294 (933)
T ss_pred eEEEeecccc
Confidence 3333333333
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.8e-23 Score=191.62 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=201.2
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg 418 (1101)
..|.+-|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|..++|-. -|
T Consensus 8 t~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccC
Confidence 347888888888778885 5999999999999998765311 1235999999999999977 89
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc-e-eEEeecCC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR-K-LFNFEGHE 494 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~-~-~~~~~~h~ 494 (1101)
..||+++.||.|.||.-++| ...+..+...|...|++++|.|.+--+.|+.++.||.|.|.+ .+|. . ......|.
T Consensus 71 ~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999999999999998 455555778999999999999998777999999999999998 3322 2 23456799
Q ss_pred cCeEEEecccCCC-c-----------cEEEEeccCCeEEEEecCCCCe--eeeccCCCCceEEEEEccCC----CEEEEe
Q 001319 495 APVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG----SRLFSC 556 (1101)
Q Consensus 495 ~~v~~v~~~~~~~-~-----------~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d~----~~l~~~ 556 (1101)
-.|++++|.|..- | +.|++|+.|..|++|+.+...- ...+..|...|+.++|.|.- .+++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999999987521 2 5699999999999999887532 23478899999999999964 478888
Q ss_pred ecCCCCCceEEEEeCCC--CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 557 GTSKDGDSFLVEWNESE--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+. |+++.||..+. ..-..++...-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 230 Sq----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 230 SQ----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cC----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 75 99999997652 112222222122378899999999999999999999999754
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=5.5e-22 Score=189.34 Aligned_cols=300 Identities=15% Similarity=0.216 Sum_probs=226.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~ 420 (1101)
.|++.|+++...|...+++.+|+.||.|.+||++.........+- -+ ..|.. ...--.+|...|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k-~~c~v--~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AK-HKCIV--AKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eh-eeeec--cccCCccceeeeeeeEEeeecCce
Confidence 589999999999974446689999999999999875422110000 00 01111 1112567999999999999 7778
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCC-ceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
+.+++.|.+++|||..+-+... .+ .-.+.|.+-+|+|-.. +-++++|..|-.|++.| .+|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8889999999999999966543 22 3466789999998643 33778888899999999 99999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCC-Ceeeecc--------------CCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD--------------APGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~--------------~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
++.|+|..+ -.|++|+.||.|++||++.. .+...+. .|.+.+.+++|+.||.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999754 67899999999999999875 3333332 34457899999999999999987 8
Q ss_pred ceEEEEeCCCCeeEEEecc---cCC---cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 564 SFLVEWNESEGTIKRTYAG---FRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
..+++|+...|+-...-.+ +.+ ..+. +. +.+...++.--.++.+.++++-.+..+..+..+. ..|.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEee
Confidence 8999999988764322111 111 0111 22 3333445555566899999999999999998774 37899999
Q ss_pred ecCCCEEEEEEcCCcEEEEEc
Q 001319 638 SKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
-|+=+...++..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.7e-22 Score=191.72 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=216.3
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee
Q 001319 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1101)
Q Consensus 409 v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~ 487 (1101)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 899999999999999 999999
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+.++ ..++|+...|+|...+..+++--.. .-.+ +.|++.-..++... .++.+
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~v---------------------i~~s~~~h~~Lp~d----~d~dl- 152 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVV---------------------IDFSDPKHSVLPKD----DDGDL- 152 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEE---------------------EEecCCceeeccCC----Ccccc-
Confidence 8887 6779999999998765555443221 1111 22222111111110 01111
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
+....+..|.+.|+++++|...|.+.++|..+.+++..+.... ...|..+.++..|++|+.-
T Consensus 153 -----------------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 153 -----------------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred -----------------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEe
Confidence 0011223588899999999999999999999999988876554 3478999999999999999
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
+.|+.||.|++..-...
T Consensus 215 tsDRvIR~ye~~di~~~--------------------------------------------------------------- 231 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDE--------------------------------------------------------------- 231 (405)
T ss_pred cCCceEEEEehhhhccc---------------------------------------------------------------
Confidence 99999999987532100
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
+.+|.+.. .-++.|+ -....-
T Consensus 232 ----------------------------~r~~e~e~------------------~~K~qDv-------------VNk~~W 252 (405)
T KOG1273|consen 232 ----------------------------GRDGEVEP------------------EHKLQDV-------------VNKLQW 252 (405)
T ss_pred ----------------------------CccCCcCh------------------hHHHHHH-------------Hhhhhh
Confidence 00000000 0000000 023345
Q ss_pred eEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 808 PCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
.+++||.||.+++.++ ...+++|....|.+++.+.+.. .....+.|+| -...+++- ..|.|+||....
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 6789999999999887 4669999999999999999877 4577899999 77777766 789999998653
No 136
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=5.7e-22 Score=208.93 Aligned_cols=496 Identities=11% Similarity=0.131 Sum_probs=297.1
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.|..++|-|||..|++. .+..+.|||.+.|..+. ++++|.+.|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEe--cCCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 79999999999987654 35589999999998775 4999999999999999999999999
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccC
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~ 505 (1101)
.|..|.+|+-+-...++ -.|.+.|.|+.|+|-.. .|+||+- ...-+|....+.+...+ ....+.+++|.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsWt-- 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSWT-- 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHhhh-hheeEEEeeec--
Confidence 99999999976543332 26999999999999998 6888874 34568985555443332 34456777775
Q ss_pred CCccEEEEeccCCeEEEEecCCCCeeeeccC---CCCceEEEEEccCCC-----EEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 506 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.||++++.|-.+|+|.+-+ .++++...+.. ...+|.+++|+|... .+++.-. ..++.++.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 4889999999999999875 34444444443 556899999999643 3333322 3445555443 3333
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
..-+... ....++.+.++|.+++.||.|+.+.+|-. .|-.+.++.... ..|+.++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L~-FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALN-FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCC-CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 2211111 24567889999999999999999999975 455666654433 3899999999999999999999999998
Q ss_pred ccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCc
Q 001319 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTS 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
+.... +..+....+ ..+..++ ++++-.+......+.- . .
T Consensus 292 l~fST--VH~ly~~RY-A~R~sMt-------------------------------DVivQhLi~~qkvrIk-C------~ 330 (1081)
T KOG1538|consen 292 LIFST--VHGLYKDRY-AYRDSMT-------------------------------DVIVQHLITEQKVRIK-C------K 330 (1081)
T ss_pred hHHhH--hhhhhHHhh-hhhhhhH-------------------------------HHHHHHHhhcceeeee-H------H
Confidence 75431 110000000 0000000 0000000000000000 0 0
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
.-|..++.-. ..+++-- ...|.+|.+......+..... . ..+. ..-...-+.+ .+.
T Consensus 331 DLVkKiaiYr--nrLAVQL-peki~iYel~se~~~~mhY~v----------~--ekI~-------kkf~cSLlVV--c~~ 386 (1081)
T KOG1538|consen 331 DLVKKIAIYR--NRLAVQL-PEKILIYELYSEDLSDMHYRV----------K--EKII-------KKFECSLLVV--CAN 386 (1081)
T ss_pred HHHHHHHhhh--hhheecc-cceEEEEeccccccccchhHH----------H--HHHH-------hhccceEEEE--EcC
Confidence 0000000000 0111111 123444443321111000000 0 0000 0000111111 245
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEE--ecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEE
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAF--HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 895 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 895 (1101)
.++.+.+.++..+|...-+. +.... ..-|..+.. -|-+..-|++|..||.|+-.=+++.-++.. ......|.|+.
T Consensus 387 HiVlCqekrLqClDF~Gvk~-ReW~M-~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl-~~~~tAvrClD 463 (1081)
T KOG1538|consen 387 HIVLCQEKRLQCLDFSGVKE-REWQM-ESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILL-LKQATAVRCLD 463 (1081)
T ss_pred eEEEEcccceeeecccchhh-hhhhH-HHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhhe-ecccceeEEee
Confidence 56666677777777643111 00000 001111111 121456688899898776544444433322 33457899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEE
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAI 961 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v 961 (1101)
.+...+.||+..+.++..++|+.+++.+- +. ..+.+++|.....-+.+ .+.|.+.|
T Consensus 464 INA~R~kLAvVDD~~~c~v~DI~t~elL~----QE------pg~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 464 INASRKKLAVVDDNDTCLVYDIDTKELLF----QE------PGANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ccCCcceEEEEccCCeEEEEEccCCceEe----ec------CCCceEEeeccccceEEEecCCceEE
Confidence 99999999999999999999999977432 21 56788999887655555 44455444
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.6e-21 Score=188.60 Aligned_cols=241 Identities=15% Similarity=0.089 Sum_probs=189.9
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+-||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999875433 236899999999998765 89999999999999666
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
.....+..|..+|.+|...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|..|++|+. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----Cc
Confidence 6666777899999999998644 479999999999999998754444444333 6777765 4567777664 88
Q ss_pred eEEEEeCCCCeeEEE-ecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC----eeeEeeccCCC-------CCCC
Q 001319 565 FLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1101)
.+.+||+++...... ....-...+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 999999987654332 22222336888999999889999999999988766654 33333433321 2478
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++++|+|-...|++|+.||.|.+||+.+.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch
Confidence 99999999999999999999999999876
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.4e-20 Score=206.24 Aligned_cols=278 Identities=16% Similarity=0.222 Sum_probs=205.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE-EEEEcCCcEEEEEccccccccccccCCCcccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+.+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..++. ....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLP------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCc-EEEecc-------
Confidence 467888999999999999998888876543 36789999999877 456678999999976541 000000
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-c-CCeEEEEECCC
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMMT 834 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-dg~i~vwd~~~ 834 (1101)
....+..++++|+++.++++ . ++.+++||+.+
T Consensus 71 ----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 71 ----------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred ----------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00112456788888876554 3 68899999998
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC-cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEE-eCCCcE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQL 912 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~-s~Dg~v 912 (1101)
++.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....... ...+..++|+|++++|+.+ ..++.|
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 105 RKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred CeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEE
Confidence 887777753 33468899999 899998888775 567789988877655432 3456789999999988544 569999
Q ss_pred EEEECCCCccccceEEeecCCCC-CCCcceEEEcCCCCEEEE--EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc
Q 001319 913 CVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 989 (1101)
Q Consensus 913 ~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s 989 (1101)
++||+.+++............+. ......++|+|+++++++ +.++.+.+||..+++.+..+.. ...+.+++|+
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~~ 257 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----GQRVWQLAFT 257 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe----CCCcceEEEC
Confidence 99999998765443322111110 123456889999998655 3477899999999888766533 4578999999
Q ss_pred cCCCEEEEE-eCCCcEEEEeCCCCceeEeeC
Q 001319 990 CNSQLVFAT-FCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 990 ~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
|+|++|+++ ..+|.|+|||+.+++.+.++.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999886 469999999999999988886
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.4e-20 Score=204.41 Aligned_cols=286 Identities=13% Similarity=0.179 Sum_probs=207.3
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 588 (1101)
..+++++.|+.|++||+.+++....+..+. .+.+++|+|+++.+++++. .++.|++||..+++....+..+.. +
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~--~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGPD--P 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCCC--c
Confidence 468899999999999998888777666543 3678999999998755432 378899999999988877765433 4
Q ss_pred EEEEEeCCCCEEEEE-eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc-EEEEEccccccccc
Q 001319 589 GVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLR 666 (1101)
Q Consensus 589 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-i~iwd~~~~~~~~~ 666 (1101)
..++++|+++.++++ +.++.+++||+.+++.+..+.... .+.+++|+|+|.+++++..++. +.+||..++. ...
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEE
Confidence 568899999988665 568999999999988777665322 3578999999999998887653 5556654320 000
Q ss_pred cccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee
Q 001319 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 746 (1101)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 746 (1101)
.
T Consensus 152 ~------------------------------------------------------------------------------- 152 (300)
T TIGR03866 152 N------------------------------------------------------------------------------- 152 (300)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-c-C
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-G 824 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d 824 (1101)
+. ......+++|++||++++++ . +
T Consensus 153 -----~~-------------------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 153 -----VL-------------------------------------------------VDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred -----EE-------------------------------------------------cCCCccEEEECCCCCEEEEEcCCC
Confidence 00 11123457888898877544 3 7
Q ss_pred CeEEEEECCCceEEEEeeCCC-----C--CeeEEEEecCCCCEEEE-EeCCCcEEEEEeecceEEEeeccCCCCeeEEEE
Q 001319 825 GKISLFNMMTFKVMTTFMSPP-----P--ASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~-----~--~i~~l~~s~~~~~~la~-g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 896 (1101)
+.|++||+.+++.+..+..+. . ....++|+| +++++++ ...++.+.+||+.+++.+..+. +...+.+++|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 889999999888776654321 1 234688999 7776544 4556789999999888776553 4457999999
Q ss_pred cCCCCEEEEE-eCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcC
Q 001319 897 STSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 946 (1101)
Q Consensus 897 s~d~~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 946 (1101)
+|+|++|+++ +.++.|++||+.+++.+...... .....++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-------RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-------cccceeEeCC
Confidence 9999999886 46899999999998866555432 3446666654
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=7.2e-22 Score=201.30 Aligned_cols=253 Identities=16% Similarity=0.229 Sum_probs=202.5
Q ss_pred cccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCCcccc-------cceeeecccCcEEEEEEecCCCceEEEEecC
Q 001319 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~-------~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~ 473 (1101)
..-|.+.|+.+..-|. ...+|+++..+.|.|||........ +-..|.||.+.-.+++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 5567778888999999997543322 22268899998889999998765 7999999
Q ss_pred CceEEEEEc--CCc------eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC--CCCeeeeccCCCCceEE
Q 001319 474 DKLIKVWEL--SGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1101)
Q Consensus 474 d~~v~iwd~--~~~------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~ 543 (1101)
|++|++||. .+. ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 999999992 222 2467789999999999998754 689999999999999999 55566677888999999
Q ss_pred EEEccCCC-EEEEeecCCCCCceEEEEeCCCC-eeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeee
Q 001319 544 MLYSADGS-RLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 544 ~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
++|+|-+. .||+++. |++|.+||++.- +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 99999655 5566665 999999999874 57888999988 89999999975 56677889999999998752222
Q ss_pred ------------EeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEcccc
Q 001319 621 ------------TSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ------------~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~ 661 (1101)
..+...+|...|..+.|+|+.. .|++.+.|+.+.||.....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1244556777899999999765 5667788999999987643
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.8e-21 Score=202.08 Aligned_cols=315 Identities=15% Similarity=0.203 Sum_probs=230.8
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+.||++.|.++...|.|. +|++|+.||+|+||. .+|+|++++. ..+.|.+|+|+|.++..+|+++-.+. +.+-+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 5779999999999999999 899999999999999 9999999887 45589999999998877776665554 55554
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe----eEEEecccCCcceEEEEEeCCCCEE
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
..-+..... -+....|+.+-.....+..+..|.-.... -++..-.|.. .+..+.|+..|.||
T Consensus 471 p~~G~~~e~-------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 471 PIFGDRLEV-------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDYL 536 (733)
T ss_pred ccccchhhh-------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCceE
Confidence 322211110 01111222221111124466778654211 1223333444 78999999999999
Q ss_pred EEEe---CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCccccc
Q 001319 601 LAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (1101)
Q Consensus 601 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 677 (1101)
++.. ....|.|+++........+.... +.|.++.|+|...+|++++. ..|+|||+... ..++.+..
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~t------- 605 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLLT------- 605 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHhc-------
Confidence 9965 34679999998776655553333 36899999999999988875 68999998654 22222211
Q ss_pred CcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeec
Q 001319 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 757 (1101)
Q Consensus 678 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 757 (1101)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECC-Cc
Q 001319 758 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM-TF 835 (1101)
Q Consensus 758 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~-~~ 835 (1101)
....|..++++|.|.-|+.++ |+++..||+. +.
T Consensus 606 ---------------------------------------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 606 ---------------------------------------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred ---------------------------------------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 223366788888888887777 8889999987 34
Q ss_pred eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee------cc---eEEEeeccCCCC----eeEEEEcCCCCE
Q 001319 836 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR------VD---EVKSKLKGHQKR----ITGLAFSTSLNI 902 (1101)
Q Consensus 836 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~------~~---~~~~~~~~h~~~----V~~l~~s~d~~~ 902 (1101)
++.+++..|...+++++|++ .-.++++|+.||++.||.-. .. -++..+.+|... |..+.|+|...+
T Consensus 641 kPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 641 KPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred chhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 67788889999999999999 88999999999999998533 11 245778899766 999999999999
Q ss_pred EEEEeCCCcEEEE
Q 001319 903 LVSSGADAQLCVW 915 (1101)
Q Consensus 903 l~s~s~Dg~v~lw 915 (1101)
|+++|.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.1e-21 Score=197.16 Aligned_cols=293 Identities=16% Similarity=0.241 Sum_probs=222.7
Q ss_pred CCCcEEEEEEecCCc-eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCE
Q 001319 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~ 420 (1101)
|...|++++|+|.-. .++|+|...|.|-+||+.+.+.... ....+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 678999999999865 7899999999999999975443332 1124788999999999999 5568
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~ 498 (1101)
+.+.+.||+|+.-|++++..- .+..+..-...+..+.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 889999999999999986432 2223333455788899998888 577777777999999 55566777888999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCee----eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC--
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-- 572 (1101)
+|+++|... .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999998754 78999999999999999875443 344567789999999999888888775 8999999983
Q ss_pred --CCeeEEEecccCC--c--ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC-eeEEecCCC-EE
Q 001319 573 --EGTIKRTYAGFRK--K--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGN-LL 644 (1101)
Q Consensus 573 --~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~-~l 644 (1101)
.-.+..++.-... . ......|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|. -..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2333333322111 1 1223689999999999998889999999999877776544322 343 357999887 44
Q ss_pred EEEEcCCcEEEEEcc
Q 001319 645 AVTTADNGFKILANA 659 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~ 659 (1101)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 545567889888654
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.5e-23 Score=222.30 Aligned_cols=235 Identities=17% Similarity=0.331 Sum_probs=212.8
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45588899999987789999999999999999987765554 5889999999999999998 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+++.++++.||...+..+.|+| -+.+.++|+.|+.+++||++..++...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999988 5589999999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
|..+++||...|+....|.+|.. .+..+.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 79999999999999999999887 7888999998888888999999999999998888776654 457999999999
Q ss_pred CCEEEEEEcC
Q 001319 641 GNLLAVTTAD 650 (1101)
Q Consensus 641 g~~l~~~~~d 650 (1101)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888654
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.2e-21 Score=183.38 Aligned_cols=298 Identities=16% Similarity=0.237 Sum_probs=216.0
Q ss_pred CCCeeEEec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 631 NLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 631 ~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.|+.+.+.+ .|+++++|+.||.|.+||+++....-..- .
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~----l------------------------------------ 84 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG----L------------------------------------ 84 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhcc----c------------------------------------
Confidence 688898888 79999999999999999997652110000 0
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc-ccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
+. .....+..+...+|.-.|..+.|-|-. ..+.+++-|.++++||.++-....
T Consensus 85 ------i~-----k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~--------------- 138 (397)
T KOG4283|consen 85 ------IA-----KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV--------------- 138 (397)
T ss_pred ------ee-----heeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE---------------
Confidence 00 000011223335588888888888754 445556679999999876422100
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCC---CeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKND---SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
. +..++.|.+-++||-. -++|+|. +-+|++-|+.+|.....+.+|...|.++.|+|...-.||+|
T Consensus 139 ------~-----F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 139 ------D-----FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred ------E-----eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEec
Confidence 0 1255667777777743 3677777 56799999999999999999999999999999667788999
Q ss_pred eCCCcEEEEEeecc-eEEEe--------------eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe
Q 001319 865 TEDSTIHIYNVRVD-EVKSK--------------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~-~~~~~--------------~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
+.||.|++||+... .+... -.+|.+.|..++|+.|+.++++++.|..+++|+..+|+........
T Consensus 208 saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~ 287 (397)
T KOG4283|consen 208 SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP 287 (397)
T ss_pred CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence 99999999999754 22222 2467889999999999999999999999999999988754322221
Q ss_pred ecCCCCCCCcceEEEcCCCCEEE-EEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 930 IPAGKTPTGDTRVQFNADQVRML-VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
............+. +.+...++ .-.++.+.++++-.+..++.+..| ...|.|.+|-|+=+.+.+|..|+.|..|-
T Consensus 288 ~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 288 IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCcccccc
Confidence 11111111111222 23333333 344699999999999999999887 88999999999999999999999999998
Q ss_pred C
Q 001319 1009 A 1009 (1101)
Q Consensus 1009 ~ 1009 (1101)
.
T Consensus 364 p 364 (397)
T KOG4283|consen 364 P 364 (397)
T ss_pred c
Confidence 6
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.5e-21 Score=201.38 Aligned_cols=241 Identities=10% Similarity=0.161 Sum_probs=179.0
Q ss_pred ccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 399 ~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
..++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.|++.. ...+.|.|++|+|.+...+|+++-. ..+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAVG-ECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEec-CceE
Confidence 3568999999999999999999999999999999999999999843 2345799999999988745555544 4477
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEe----ccCCeEEEEecCCC----CeeeeccCCCCceEEEEEccC
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~~~~s~d 549 (1101)
|-+ .-|..+..-. +. ..|+++ ..++.+..|.-... ..+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~--t~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP--TK-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcc--hh-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 777 5453221110 00 111111 23456777854421 112344457778999999999
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
|.||++...+ ++...|.|.++...+...-|....+ .+.++.|+|...++++++. ..|+|||+....++..+... .
T Consensus 533 GDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 533 GDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred CceEEEeccC-CCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--C
Confidence 9999998753 3467799999988777766655554 7888999999999988875 58999999987777666533 3
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
..|..++.+|.|..|++++.|+.+..+|+.-..+.
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence 37889999999999999999999999998755333
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=6.5e-21 Score=201.19 Aligned_cols=289 Identities=17% Similarity=0.210 Sum_probs=211.0
Q ss_pred EEEec--CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 350 MDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 350 v~fsp--dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
+.|++ .-+++||.+..||.|.++|...-.-... +.+......|.+.|..+.|-|-...|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 44543 4567999999999999999865332100 00112366799999999999977788999999
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc--------------------
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR-------------------- 485 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~-------------------- 485 (1101)
.++++||++++++.... .+.||.+.|.+++|.|++.. .|++|+.||.|.||| .++.
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998877643 47799999999999999987 899999999999999 3330
Q ss_pred ------eeEEeecCCcCeEE----EecccCCCccEEEEecc-CCeEEEEecCCCCeeee--------ccCC---CCceEE
Q 001319 486 ------KLFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTT 543 (1101)
Q Consensus 486 ------~~~~~~~h~~~v~~----v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~--------~~~~---~~~v~~ 543 (1101)
.+.....+...|.+ +.| . |...|++++. |+.|+|||++....... +..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 01122234444443 443 2 4468888888 99999999987654432 2222 235788
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEecccCCcceE-EEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
+.....|.+|++.+. |+.|+.|++.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888899887775 899999998753 345555555442322 2457899999999999999999999876543
Q ss_pred EeeccCCCCCCCCeeEEecC-CCEEEEEEcCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
..+. .++...|++++|.|. -.-++++++|..+++|++.++
T Consensus 353 ~~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3221 234557899999883 345667799999999999766
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=199.64 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=207.5
Q ss_pred ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEE
Q 001319 750 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 828 (1101)
Q Consensus 750 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~ 828 (1101)
..|+.+.++|.|.++|.....+.++.. ...-| ..|...|..+.|-|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~-----~lk~~--------------~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEER-----QLKKP--------------LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhh-----hhccc--------------ccccceeEeeccCCCceeEEEccCCceee
Confidence 445666678999999865433321110 00111 13999999999999666777777 88999
Q ss_pred EEECCCceEEEE--eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce---------------------------
Q 001319 829 LFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------------- 879 (1101)
Q Consensus 829 vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--------------------------- 879 (1101)
+||+++.+++.. +.+|.+.|.++||.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999998877 889999999999999888999999999999999986421
Q ss_pred EEEeeccCCCCeeE---EEEcCCCCEEEEEeC-CCcEEEEECCCCccccce------EEeecCCCCCCCcceEEEcCCCC
Q 001319 880 VKSKLKGHQKRITG---LAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSV------TIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... ..... ....-.+.++..+..|.
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-SKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc-ccceeeeEEEEecCCCC
Confidence 11223445556666 666778899999988 999999999875432211 11111 11114567777788888
Q ss_pred EEEE-EeCCeEEEEEcCCcee--eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 950 RMLV-VHETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 950 ~l~~-~~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
+|.+ +.|+.|++|++.+... +..+..+.. ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------- 356 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------- 356 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCccc-ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------
Confidence 8887 6799999999986543 222222211 2222334568999999999999999999999876543332
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1027 SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
-.|.+.++.++|.|..-.-++|+++|-+++||++..+-
T Consensus 357 ----~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 ----LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ----hCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 24556778999999877889999999999999996554
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.6e-22 Score=212.68 Aligned_cols=232 Identities=10% Similarity=0.189 Sum_probs=208.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|...|.|+..-..++ ++++|+.|..+-+|.+..-..+. .+.+|+.+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 777888888855666 67899999999999986544332 2789999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+.+|+|++||++.++.++ +|.||...+..++|+|-+. +.++|+.|+.+++|| ....|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999998888 7889999999999999999 789999999999999 76889999999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+| +|.++++++.|.++++||...++....+..|...+.++.|.|..-+++.|+. |.++++||+++.+.+....
T Consensus 162 lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 987 7799999999999999999999999999999999999999999999999986 9999999999999888877
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
.... .+.+.+|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 78999999999888887654
No 149
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4.9e-19 Score=187.06 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=196.4
Q ss_pred cEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee
Q 001319 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 453 ~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 531 (1101)
.|..++|-|||..+++++ +..+.+|| .+|..+.++++|.+.|.+++|+. ||+.+++|+.|+.|.+|.-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG-~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEG-I 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEecccccc-e
Confidence 799999999999744443 44789999 99999999999999999999976 78999999999999999754332 2
Q ss_pred eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 532 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
.. -.|+..|.||.|+|-...+++|+- ...-+|........+. + ....+.+++|..||.+++.|-.+|+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~K~-k--ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVSKH-K--SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHHhh-h--hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 247788999999999999999974 3356787665433221 1 1125777899999999999999999999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCC-----EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeee
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-----LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1101)
-+....+.+..-...+...+|.+++|+|... .+++..-..++.++.+...
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~------------------------- 213 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK------------------------- 213 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------------------------
Confidence 8765444444434444567899999999642 2222222222222221100
Q ss_pred eccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 687 VSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
T Consensus 214 -------------------------------------------------------------------------------- 213 (1081)
T KOG1538|consen 214 -------------------------------------------------------------------------------- 213 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCC
Q 001319 767 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~ 845 (1101)
.+.... ...-...|+.+-++|.++..|+ |+.+.+|.- .|-.+.++....
T Consensus 214 --------------------------~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 214 --------------------------QIGKDR---ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD 263 (1081)
T ss_pred --------------------------eecccc---cCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc
Confidence 000000 0223345777788888877776 777888754 466666666667
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 846 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
..|..++..| +++.++.|+.||+|--|++..
T Consensus 264 ~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 264 SWIWTVQAKP-NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eeEEEEEEcc-CCceEEEEEccCeeehhhhHH
Confidence 7899999999 999999999999999998753
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-21 Score=208.12 Aligned_cols=248 Identities=14% Similarity=0.219 Sum_probs=195.7
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVA 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~las~ 424 (1101)
.+..|+|+.--..+||+++..|.|.+||+.... ..+ +...|..|+..|+++.|++- -.+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNK--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--cch--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 455677775555588999999999999997621 100 11248889999999999994 5688899
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEec
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~ 502 (1101)
+.||+|++||+...+... ++.+....|++++|+|-..+ .++++.+.|.+++|| ...++...+..|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999877655 56678899999999997665 899999999999999 566788899999999999999
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-CCCceEEEEEccCCCE-EEEeecCCCCCceEEEEeCCCCe-eEEE
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGT-IKRT 579 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~-~~~~ 579 (1101)
+| ++.+|++||.|++|+|||+.+......... ...++..+.|-|+..+ |++++. -.+-.|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 99 678999999999999999986655443333 3457899999998775 445543 347789999998765 4456
Q ss_pred ecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCe
Q 001319 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 580 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
+..|.. .++.++|.. |...+.+++.||+|..-.++++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 777776 788888865 45677888999988776655543
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=174.60 Aligned_cols=255 Identities=11% Similarity=0.155 Sum_probs=191.5
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc-ccccceeeecccCcEEEEEEecC--CCceEEEEecCCceE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v 477 (1101)
+-.+|.+-|.++.|.+-|+.+|+|+.|++|+|||.+... ........+.|.+.|..+.|.+. |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 356799999999999999999999999999999965433 23334467899999999999875 66 89999999999
Q ss_pred EEEEc-CC---------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee------eecc------
Q 001319 478 KVWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------ 535 (1101)
Q Consensus 478 ~iwd~-~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~------ 535 (1101)
.||.. .. ....++....+.|+.|.|.|..-|-.+++++.||.+|||+....... .++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 11 12345666788999999999988999999999999999976543222 1221
Q ss_pred -CCCCceEEEEEccC---CCEEEEeecC-CCCCceEEEEeCCCC----eeEEEecccCCcceEEEEEeCCC----CEEEE
Q 001319 536 -APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLA 602 (1101)
Q Consensus 536 -~~~~~v~~~~~s~d---~~~l~~~~~~-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 602 (1101)
.+.....|+.|+|. ..++++++.+ ...-+.+.||....+ ..+.++.++.. +|+.++|.|+- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23346788999874 3467777642 112236777765433 24456677776 89999999963 46888
Q ss_pred EeCCCcEEEEECCCCe-----------------eeEee-ccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 603 VGEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
++.|| |+||.+.... .+..+ ...+|...|..+.|+-.|..|++.+.||+|++|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 11111 234556689999999999999999999999999754
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.1e-19 Score=182.03 Aligned_cols=303 Identities=15% Similarity=0.214 Sum_probs=215.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
...+|..+.|.+++...+|||+.|..|+||.+..+..-... . ... -...+..|..+|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~--------~V~-y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M--------KVE-YLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e--------eEE-EeecccCCcceeEEEEEcCCcCeee
Confidence 46799999999987656799999999999999765432210 0 001 1235889999999999999999999
Q ss_pred EEECCCeEEEEeec--------C-----CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE
Q 001319 423 VAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 423 s~~~d~~i~vwd~~--------~-----~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
+|+.+|.|.+|... + .+.....+.+.+|...|..++|+||+. ++++++.|.++++|| ..|+.+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 122233446789999999999999999 899999999999999 9999999
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-------------------CCC----CceEEEE
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APG----HWCTTML 545 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~~~ 545 (1101)
.+..|...|..++|.| -++++++-+.|...+.+.+.......... .|. .....++
T Consensus 160 ~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 9999999999999977 45899999988877766654432221110 011 1235678
Q ss_pred EccCCCEEEEeecCCCC-----CceEEEEeCCC-CeeEEEecccCCcceEEEEEeCC-----------------CCEEEE
Q 001319 546 YSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-----------------QNHFLA 602 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~ 602 (1101)
|+|||..+++...--.- .+..++++-.. .++...+.+... ....+.|+|- -+.+++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999976431111 12233443322 223333333322 2222333220 123333
Q ss_pred EeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
......|++||.++-.++..... -|...+++++|++||..|++.+.||...+..++..
T Consensus 317 iAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 34456899999998777766643 24568999999999999999999999888776654
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.9e-19 Score=173.68 Aligned_cols=253 Identities=13% Similarity=0.237 Sum_probs=190.3
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CCC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~ 419 (1101)
+|.+-|.++.|.+-|+++ |+|+.|++|+|||.+....- |. .....+.|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~-------W~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGT-------WS--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCc-------eE--------EeeeEEecCCcEEEEEecCccccc
Confidence 588999999999999975 99999999999997554321 11 1123677999999999976 699
Q ss_pred EEEEEECCCeEEEEeecC------CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee-----
Q 001319 420 YVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----- 487 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~------~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~----- 487 (1101)
.+|+++.|+++.||.=.. +..-....++......|+++.|.|....+.+++++.||++|||+ .+--.+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997621 11222333566778899999999987777999999999999999 443222
Q ss_pred -EEee-------cCCcCeEEEecccCCC-ccEEEEeccC-----CeEEEEecCCCCee----eeccCCCCceEEEEEccC
Q 001319 488 -FNFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 488 -~~~~-------~h~~~v~~v~~~~~~~-~~~l~s~~~d-----~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d 549 (1101)
..+. .+..+..|+.|+++.- ..+|+.|+.+ +.+.||........ .++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 4666788888876532 2456666655 48899987766533 356678889999999996
Q ss_pred C----CEEEEeecCCCCCceEEEEeCCCC--------------------eeEEEecccCCcceEEEEEeCCCCEEEEEeC
Q 001319 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 550 ~----~~l~~~~~~~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
- ..||+++. || |+||.+... +.+..+.+|.. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 35667663 77 999998731 23444666665 8999999999999999999
Q ss_pred CCcEEEEECCC
Q 001319 606 DSQIKFWDMDN 616 (1101)
Q Consensus 606 dg~i~iwd~~~ 616 (1101)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997653
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.1e-21 Score=216.09 Aligned_cols=297 Identities=15% Similarity=0.256 Sum_probs=226.9
Q ss_pred EEEEEEecCCceEEEEEec----------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~----------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
-..+||||++..++|+|.. +.++.||.++-...... ++..--.......+.++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeecc
Confidence 3457899999756777643 33455555443221110 00000111355788999999
Q ss_pred CCCE----EEEEECCCeEEEEeecC---CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE
Q 001319 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 417 dg~~----las~~~d~~i~vwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ +|++|+.||.|.||| .+-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444455567899999999999999877 899999999999999 4433333
Q ss_pred Ee--ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC--ceEEEEEccCCCEEEEeecCCCCCc
Q 001319 489 NF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 489 ~~--~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
++ ....+.|.+++|+.. ...+|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...-+....+.|+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 33 124567999999754 457899999999999999999988877766655 5789999998875444444567788
Q ss_pred eEEEEeCCCC-eeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC-
Q 001319 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG- 641 (1101)
Q Consensus 565 ~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g- 641 (1101)
.|.+||++.. ..++.+.+|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|..
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999998754 46677778776 78889999866 7888999999999999999999999987544 78999999955
Q ss_pred CEEEEEEcCCcEEEEEccccc
Q 001319 642 NLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
..+++++.||.|.|+.+.+..
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 488899999999999987663
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.6e-20 Score=201.24 Aligned_cols=296 Identities=12% Similarity=0.152 Sum_probs=222.7
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~la 422 (1101)
+....+|...++-..+++.| ...+.|+.+....... ++.+.+ . .-..--..+..|+|.. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~--------k--~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRF--------K--TKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeec--------c--cccceeeehhhcccccchhhhhe
Confidence 34677788888876664433 3467788776543221 111110 0 0000112455678876 678999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+++..|.|.+||+...-.-+.+..+..|...|+++.|++-..+ +|+|||.||+|++|| ...+...++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222233367899999999999998877 899999999999999 77778888888889999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
|+|.. +..++++...|.+++||++... ..+.+..|.++|.++.|+|++.+||+||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 5799999999999999998765 45678899999999999999999999996 999999999987766555
Q ss_pred cccCCcceEEEEEeCCCCE-EEEEe--CCCcEEEEECCCCe-eeEeeccCCCCCCCCeeEEec-CCCEEEEEEcCCcEEE
Q 001319 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~i 655 (1101)
.-+...++..+.|-|+..+ |++++ .|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.|++|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 5555668999999998755 45544 68899999997543 33444433 45788999966 5567888999998766
Q ss_pred EEcccc
Q 001319 656 LANAIG 661 (1101)
Q Consensus 656 wd~~~~ 661 (1101)
-.+.+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 544444
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=3.1e-17 Score=191.00 Aligned_cols=371 Identities=23% Similarity=0.407 Sum_probs=281.5
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc-ccccceeeeccc-CcEEEEEE-ecCCCceEEEEecCCceEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHV-GAVNDLAF-AYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~l~~h~-~~V~~l~~-s~d~~~~~l~s~~~d~~v~ 478 (1101)
...|...+.++.|.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ .+++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 56689999999999999999999999999999999876 333 455533 37888887 7777632333345599999
Q ss_pred EEE-cC-CceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEE
Q 001319 479 VWE-LS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLF 554 (1101)
Q Consensus 479 iwd-~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 554 (1101)
+|| .. ......+..|...|..++|++. +..+++++. |+.+++|+.........+..|...+.+++|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999 44 6888899999999999999874 457888875 99999999998778888888889999999999998 444
Q ss_pred EeecCCCCCceEEEEeCCCCeeEE-EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee-eEeeccCCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNL 632 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 632 (1101)
+++ .++.|.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... ...+ ..+...+
T Consensus 216 ~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred Eec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 434 38889999998888888 6777776 33 338999998889999999999999987664 4444 2335578
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
.++.|+|++..+++++.|+.+.+|+..+..... ...
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-SLT------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE-Eee-------------------------------------------
Confidence 999999988888888888889999765441100 000
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcc
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 792 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1101)
. .
T Consensus 324 -----------------~---~---------------------------------------------------------- 325 (466)
T COG2319 324 -----------------L---K---------------------------------------------------------- 325 (466)
T ss_pred -----------------e---c----------------------------------------------------------
Confidence 0 0
Q ss_pred ceeeccCCCCCCCCEeEEEecCCCCeEEEE-c-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE-EeCCCc
Q 001319 793 LMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDST 869 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~ 869 (1101)
.|...+..+.+.+++..++.+ . ++.+.+|+............. ..+..+.+++ + ..++. +..++.
T Consensus 326 ---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~ 393 (466)
T COG2319 326 ---------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGT 393 (466)
T ss_pred ---------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCc
Confidence 133345556663232444444 3 677888888776632222222 2288899998 7 55554 789999
Q ss_pred EEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 870 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 870 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
+.+|+............+...+....+++++..+++++.++.+++|+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99999999888777765557899999999999999999999999999988
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.5e-19 Score=176.02 Aligned_cols=290 Identities=16% Similarity=0.249 Sum_probs=211.9
Q ss_pred cCCCcEEEEEEec----CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 342 HQGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 342 ~h~~~V~~v~fsp----dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
.|+.+|..++|.+ +...++|+.+. +.+.||++.....+. .++...-..|.....-++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3788999999985 22336676644 588899986543221 1121122347788888999875
Q ss_pred C----CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe--
Q 001319 418 G----NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1101)
Q Consensus 418 g----~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-- 490 (1101)
- -++|+|+.-|.|+|.|+.++++.. .+.+|.+.|+.+.|.|+..+ +++++|.|.+|++|+ .+..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 489999999999999999998877 68899999999999999877 899999999999999 899998877
Q ss_pred -ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----------------------------eccCCCCce
Q 001319 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------------------------DYDAPGHWC 541 (1101)
Q Consensus 491 -~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------------------~~~~~~~~v 541 (1101)
.||.+.|.++.|+. +|.++++++.|.+|++|++...+-.. +...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999987 56799999999999999997432111 011122233
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeC-CCCee-------------EEEecccCCcceEEE--EEeCCCCEEEEEeC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTI-------------KRTYAGFRKKSNGVV--QFDTTQNHFLAVGE 605 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~ 605 (1101)
.|+.|- |.++++-+. ++.|..|.. +-++. ...+.-... .+..+ +|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333332 467777654 778999987 22221 222222222 34444 55666789999999
Q ss_pred CCcEEEEECCCCeee--EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 606 DSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 606 dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
.|.|++||++..+.. .++........|...+|+.||..|+..++|++|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999886652 233333344578999999999999999999999999853
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=8.9e-20 Score=186.42 Aligned_cols=216 Identities=15% Similarity=0.273 Sum_probs=174.1
Q ss_pred EEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 809 CIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
|++......++++|+ .+.|+|||++...+.+.++.|...|+++.+.- ...+||+++..|.|.|..+.++.....|.-.
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecC
Confidence 333333447788887 88999999998888888999999999999998 7789999999999999999999877777644
Q ss_pred C-CCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE--EeCCeEEEEE
Q 001319 888 Q-KRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYD 963 (1101)
Q Consensus 888 ~-~~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d 963 (1101)
. ..|.-+.|++..+ +|.+++.+|.|.+||+...... ++....|. .+...++|+|....|++ |-|.+|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~~~~Hs-AP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHASEAHS-APCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cchhhhcc-CCcCcceecCCccceEEEecccceEEEee
Confidence 3 4466899999876 5667899999999999885432 22223333 78889999998887776 6799999999
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEe
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1043 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~ 1043 (1101)
+...+....+.. ..+.+.|+|+++|.+|+.|+..|.|..||++..+...... |.|...|++++|-
T Consensus 238 ~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-----------sah~~sVt~vafq 302 (673)
T KOG4378|consen 238 IRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-----------SAHDASVTRVAFQ 302 (673)
T ss_pred cccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-----------eecccceeEEEee
Confidence 998888777766 7889999999999999999999999999998765433333 4555567899998
Q ss_pred cC
Q 001319 1044 PL 1045 (1101)
Q Consensus 1044 p~ 1045 (1101)
|.
T Consensus 303 ~s 304 (673)
T KOG4378|consen 303 PS 304 (673)
T ss_pred ec
Confidence 83
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8.3e-20 Score=185.15 Aligned_cols=240 Identities=14% Similarity=0.138 Sum_probs=186.8
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccce------------------eeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHS------------------QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~------------------~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
|+|+|.|+.|..|.|||+.--..+.+.. .-.+|++.|.+++|+..-++ +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 6899999999999999986332222111 12379999999999998877 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| .+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+.....-..-.-.+.|..++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99 9999999999999999999999874 589999999999999999843222111112345889999998877776665
Q ss_pred CCCCCceEEEEeCCCC-eeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 559 SKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
.+|+|+-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|.+|++............-..+...|.+
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 4899999999874 89999999988 89999998854 467779999999999987644432222222223456777
Q ss_pred EecCC-CEEEEEEcCCcEEEEEcccccc
Q 001319 637 FSKEG-NLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 637 ~s~~g-~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
+.|+- -.++.|+..+.+++||+.+...
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChh
Confidence 77754 4677778888899999987633
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=3.6e-19 Score=173.28 Aligned_cols=298 Identities=12% Similarity=0.196 Sum_probs=207.0
Q ss_pred CCCcccEEEEEeec----CcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 734 TDTSSKVVRLLYTN----SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~----~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
..|..+|.+++|.+ +...+++......+.+|+...... + ..+..... ..+.+....
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-----------i--------r~lq~y~D-~d~~Esfyt 94 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-----------I--------RLLQSYAD-EDHDESFYT 94 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-----------e--------eeeeeccC-CCCCcceEE
Confidence 34778888898873 334455555566888887653210 0 01111111 136666677
Q ss_pred EEecCC----CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 810 IALSKN----DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 810 ~~~s~d----g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
++|+-| ..++|+++ -|.|+|.|+.++++...+.+|...|..+.|.|...+++++++.|.+|++|++.+..++..|
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 777654 33666666 7999999999999999999999999999999977789999999999999999999999887
Q ss_pred ---ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-------------ecCCC---------CCCCc
Q 001319 885 ---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-------------IPAGK---------TPTGD 939 (1101)
Q Consensus 885 ---~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-------------~~~~~---------~~~~v 939 (1101)
.||.+.|.++.|+++|.+++|+|.|.++++|++...+........ ....+ +...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 579999999999999999999999999999999853322111110 00000 00222
Q ss_pred ceEEEcCCCCEEEE-EeCCeEEEEEcC-Ccee-------------eeEeccCCCCCCCEEEEEEc--cCCCEEEEEeCCC
Q 001319 940 TRVQFNADQVRMLV-VHETQLAIYDAS-KMER-------------IRQWTPQDALSAPISCAVYS--CNSQLVFATFCDG 1002 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~-~~d~~i~v~d~~-~~~~-------------~~~~~~~~~h~~~v~~v~~s--~dg~~l~s~~~dg 1002 (1101)
.++.|- |.++++ +.++.|..|... -.+. +..+... ...|.-+.|+ +-+++||.|...|
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHHHhhccCCC
Confidence 222222 456666 568899999872 1222 2222222 5566666655 5578999999999
Q ss_pred cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1003 NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.|++||++..+....-... .+.....+-..+|+. |+.+|+...+|++|.-||.-
T Consensus 330 ~v~vwdL~~~ep~~~ttl~--------~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTLT--------HSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEECCCCCCccCceEE--------eccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999987653111100 022223345778888 79999999999999999853
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.4e-16 Score=185.40 Aligned_cols=290 Identities=26% Similarity=0.428 Sum_probs=220.4
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCc-eeccccceeecccccCccccccccccCC-ccEEEEEE-c
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~-s 415 (1101)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 34468999999999999984 5777789999999998875 222 133322 47777777 8
Q ss_pred cCCC-EEEEEEC-CCeEEEEeecC-CcccccceeeecccCcEEEEEEecCCCceEEEEecC-CceEEEEE-cCCceeEEe
Q 001319 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 416 pdg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-d~~v~iwd-~~~~~~~~~ 490 (1101)
+++. +++..+. |+.+.+||... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999997 44333 6779999999999999999 6788875 99999999 667889999
Q ss_pred ecCCcCeEEEecccCCCcc-EEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++.++++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 99999999999985 555 55555999999999888666666 566666654 4489999988887764 899999
Q ss_pred EeCCCCee-EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
|+...... ...+.+|. ..+..+.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987664 44444553 47888999998889998888899999999887766665511222257788883332455555
Q ss_pred -EcCCcEEEEEcccc
Q 001319 648 -TADNGFKILANAIG 661 (1101)
Q Consensus 648 -~~d~~i~iwd~~~~ 661 (1101)
..|+.+.+|+....
T Consensus 347 ~~~d~~~~~~~~~~~ 361 (466)
T COG2319 347 GSDDGTIRLWDLRTG 361 (466)
T ss_pred ecCCCcEEeeecCCC
Confidence 56777877776544
No 162
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=5.5e-19 Score=171.61 Aligned_cols=409 Identities=13% Similarity=0.139 Sum_probs=252.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
-++|||+|+|+|+++.- .+.|-|.++-+..+.+ ---+.|..+.|..|.-+ .|.....|+.|.+|+ ...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999776 6888888886654422 22456888999998876 677888999999999 66666777
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
+......+.+++|+|++ ..+|.+...|-.|.+|.+.+...... ......+..++|.|||++.+.+++ .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCc-ceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 88788899999998843 25677788899999999987665443 334455789999999999999875 1222223333
Q ss_pred eCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
.-....+.+.+..... ..+.+.|+|||+.+++ ||---.-.+..+... -.+..++|+|.+++|++|+.
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEeecc
Confidence 2233344455554444 4566899999988765 443222122222211 14688999999999999999
Q ss_pred CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEE
Q 001319 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVT 729 (1101)
Q Consensus 650 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 729 (1101)
|+.+|+.+--+= ++-++.+-...-.+.+. . +.. ......+
T Consensus 231 D~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~-----------~-~~~---ke~~~~~- 270 (447)
T KOG4497|consen 231 DQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTL-----------H-LLE---KETFSIV- 270 (447)
T ss_pred chhhhhhceeee------------------------eehhhhccchhccCchh-----------h-hhh---hhhcchh-
Confidence 999998653221 11111110000000000 0 000 0000000
Q ss_pred cCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 730 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 730 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
.-...++.|.|..- ...+|............. .......+. .+.+ +....+.-
T Consensus 271 -------ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p---v~~~~lkp~------tD~p--nPk~g~g~ 323 (447)
T KOG4497|consen 271 -------QLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP---VKVHKLKPP------TDFP--NPKCGAGK 323 (447)
T ss_pred -------hhcccccccCCCcc---------ccCccccchhhhhhhhcc---eeeecccCC------CCCC--Ccccccce
Confidence 00001222222110 011111000000000000 000000000 0111 24556778
Q ss_pred EEecCCCCeEEEEcC---CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 810 IALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 810 ~~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
++||+|..++++..| +.+.+||++..+....+. ...+|.+..|.| +...|+.+.....+++|.......+..- +
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~ 400 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-K 400 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-C
Confidence 999999999999875 569999998877655544 467899999999 7777777777778999988765555433 3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCc
Q 001319 887 HQKRITGLAFSTSLNILVSSGADAQ 911 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~~l~s~s~Dg~ 911 (1101)
..-.|..+.|.-+|..++-.+.|..
T Consensus 401 ~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceeeeEEecCCCcEEEEEcCCce
Confidence 3467999999999999999998864
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=9.6e-19 Score=169.78 Aligned_cols=287 Identities=15% Similarity=0.215 Sum_probs=210.3
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc-------cCCC
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s-------pdg~ 419 (1101)
...+.|||||..+| +-+.|..+.+|++...-.-....... ..+.....-......|...+|- |+..
T Consensus 52 ~kgckWSPDGSciL-~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSCIL-SLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCceEE-eecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45688999999765 56799999999985321111000000 0000001111234567777775 6788
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccC---cEEEEEEecCCCceEEEEecCCceEEEEE--cCCce--eEEee-
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK--LFNFE- 491 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~---~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~--~~~~~- 491 (1101)
++|+.+.+.-|++||.-+|+.......+ .|.+ .-.+++|+|||. .|++ +..+.|+++| ..|+- +....
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999865533222 3444 346899999999 4665 4588999999 55543 22222
Q ss_pred ----cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 492 ----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 492 ----~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+..+-|.+++|+|.. ...++.++...++-++.-........+.+|++.|+.++|.++|+.|++|+. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 336678999999874 468999999999999988889999999999999999999999999999986 577899
Q ss_pred EEeCCC-CeeEEEecccCCcceEEE--EEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 568 EWNESE-GTIKRTYAGFRKKSNGVV--QFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 568 iwd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999985 556667777655333334 4568899999999999999999998 666666665544 7899999999888
Q ss_pred EEEEEcC
Q 001319 644 LAVTTAD 650 (1101)
Q Consensus 644 l~~~~~d 650 (1101)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877754
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=8.4e-19 Score=173.85 Aligned_cols=263 Identities=17% Similarity=0.209 Sum_probs=186.8
Q ss_pred CCcceeEeecCCCcEEEEEEecCCc-eEEEEEeccCcEEEEecCCCce-eccccceeecccccCccccccccccCCccEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDR-LVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~-~llasg~~d~~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 410 (1101)
.|..-...++|.+.|.-+.-++-|+ .++|+=+..|.|.||++...-. +....+..-+ +...+..++.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 3444556677888898888888753 4566668899999999854211 1111111111 11123346889999999
Q ss_pred EEEEccC-CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---c
Q 001319 411 RVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---R 485 (1101)
Q Consensus 411 ~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~ 485 (1101)
.++|||- -..|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|+|||.||+|+||| ..+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999992 234778888888999999987644333357789999999999998777 899999999999999 665 3
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC---CeeeeccCCCCceEEEEEccCCCE-EEEeecCCC
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKD 561 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~~~ 561 (1101)
++.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. ..+..+..|..+|+++.|+|.... +++++
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---- 367 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---- 367 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----
Confidence 3433 8899999999998654 48999999999999999764 455688889999999999996554 44444
Q ss_pred CCceEEEEeCCCCee----------------EEEeccc-CCcceEEEEEeCCC-CEEEEEeCCC
Q 001319 562 GDSFLVEWNESEGTI----------------KRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDS 607 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg 607 (1101)
.|.+|.+||+..-.- .+.+--| .+..+.-+.|++.- .++++.+.||
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 388999999863211 0111112 12235557777753 4566666666
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=9.1e-18 Score=168.56 Aligned_cols=300 Identities=17% Similarity=0.232 Sum_probs=217.7
Q ss_pred cccEEEEEeecCcc-cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 737 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~-~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
..++.++.|.+++. .+++++.|..|++|.+........+... .....+. .|...|.++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeeccc--CCcceeEEEEEcCC
Confidence 45677888887776 8999999999999998765432211000 1111122 49999999999999
Q ss_pred CCeEEEEc-CCeEEEEECC--------C--------ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 816 DSYVMSAT-GGKISLFNMM--------T--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
|.++|+|+ +|+|.+|-.. + +.....+.+|...|..++|+| ++.++++++-|+.+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999998 6889999654 2 445667888999999999999 9999999999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE---Eeec--------------CCCCCCCcce
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT---IHIP--------------AGKTPTGDTR 941 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~---~~~~--------------~~~~~~~v~~ 941 (1101)
+.+..+.+|..-|..++|.|-++++++-+.|...+.+.+.......... +... .+.-..-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999877777766543322211 0000 0001144668
Q ss_pred EEEcCCCCEEEEEe-----CCe-----EEEEEcCCce-eeeEeccCCCCCCCEEEEEEcc--------C---------CC
Q 001319 942 VQFNADQVRMLVVH-----ETQ-----LAIYDASKME-RIRQWTPQDALSAPISCAVYSC--------N---------SQ 993 (1101)
Q Consensus 942 ~~~s~d~~~l~~~~-----d~~-----i~v~d~~~~~-~~~~~~~~~~h~~~v~~v~~s~--------d---------g~ 993 (1101)
++|+|||.++++.. .+. .++|+-...+ .+..+... ..++..+.|+| + -+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccc
Confidence 89999999999821 232 3555554332 23333333 66777777765 1 12
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 994 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 994 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+++.-.....|+|||.++...++....- |-..++.++|++ |+..|+..+.||-..+-.++..|
T Consensus 313 lvfaiAt~~svyvydtq~~~P~~~v~ni-----------hy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 313 LVFAIATKNSVYVYDTQTLEPLAVVDNI-----------HYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEEeecceEEEeccccccceEEEeee-----------eeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 3333344668999999999888887643 233457899999 79999999999977665554444
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.7e-18 Score=172.57 Aligned_cols=253 Identities=15% Similarity=0.226 Sum_probs=191.4
Q ss_pred cEEEEEEcc-----CCCEEEEE---ECCCeEEEEee-cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 408 ~v~~~~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.|+..+|.. +.++||+. +..|...|--+ ++|+.-.....+.||+++|..++|+|-+.+ .++|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 344455433 45666653 22233333333 345544444567799999999999998776 899999999999
Q ss_pred EEE-cCC-------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC
Q 001319 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1101)
Q Consensus 479 iwd-~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~ 550 (1101)
||. ..+ +++..+.||+..|.-|+|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999865 689999999999999999999999988 88899999999999
Q ss_pred CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCeeeEeeccC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
.++++.+. |..|++||.++++.+..-.+|.+.....+.|-.+|. +++.| .+..+-+||..+.+....+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999986 889999999999999998888887777788888888 55544 6789999997764332222111
Q ss_pred CCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 668 (1101)
.....|.---|.+|...++.++ .|+.|+.|.+.+....+..+
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 1222455555778888777655 59999999998774444433
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=5.6e-19 Score=179.22 Aligned_cols=253 Identities=12% Similarity=0.140 Sum_probs=183.5
Q ss_pred CceEEEEEeccCcEEEEecCCCceeccccceeecccccCc----cccccccccCCccEEEEEEccC-CCEEEEEECCCeE
Q 001319 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL----PFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLI 430 (1101)
Q Consensus 356 g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~~h~~~v~~~~~spd-g~~las~~~d~~i 430 (1101)
|+ ++|.|+.|..|.|||++-...+.. .+.+ ....+.. ........+|+..|.+++|..+ ...||+||.|.+|
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~L-Gs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTL-GSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred cc-eEEEeccCceeEEecccccccccc-ceee-chhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 55 579999999999999976544320 0100 0000000 0011224589999999999985 4578999999999
Q ss_pred EEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCcc
Q 001319 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 509 (1101)
++||+.+|++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.| .........-...+.|-.++|.+... .
T Consensus 269 ~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~ 343 (463)
T KOG0270|consen 269 KLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-N 343 (463)
T ss_pred EEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-e
Confidence 999999999877 67789999999999998776 899999999999999 53322222222566799999987654 5
Q ss_pred EEEEeccCCeEEEEecCCC-CeeeeccCCCCceEEEEEccCCCEE-EEeecCCCCCceEEEEeCCCCeeEEEeccc-CCc
Q 001319 510 FIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKK 586 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~ 586 (1101)
.++++..||+|+-+|++.. ++.+.+..|...|.++++++.-..+ ++++ .++.|.+|++..-......... .-.
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~~~~~~~~~v~~~~~~~~ 419 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWKFDVDSPKSVKEHSFKLG 419 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEeecCCCCccccccccccc
Confidence 7788899999999999987 7788999999999999999876654 4554 4899999998754332111100 011
Q ss_pred ceEEEEEeCCCCE-EEEEeCCCcEEEEECCCCeee
Q 001319 587 SNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 587 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
...|.++.|+-.+ ++.||..+.++|||+.+...+
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3556677776554 555788889999999876544
No 168
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3e-17 Score=177.08 Aligned_cols=496 Identities=15% Similarity=0.186 Sum_probs=304.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCC----------CceEEEEecCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN----------KLLCVVTCGDDK 475 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~----------~~~~l~s~~~d~ 475 (1101)
...-.++.|+|.| +||.|+.. .|.|-|..+-+.+. .+..|...|+.+.|.|-. ..++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 4447788999866 67777654 68999988877666 678899999999998732 345789999999
Q ss_pred eEEEEE-cCCceeEEeecCCcCeEEEecccCCCc--cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCC
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~ 551 (1101)
.|.+|| ..+..+..+..|..++..++|.+..+. .+|++.....++.+|+.++++..+..........|+.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888999999999999999875443 4677778889999999999999999888888888899988 445
Q ss_pred EEEEeecCCCCCceEEEEeCC-------CCeeEEEecccCC-----------cce-------------EEEEEeCCCCEE
Q 001319 552 RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRK-----------KSN-------------GVVQFDTTQNHF 600 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-----------~~v-------------~~~~~~~~~~~l 600 (1101)
.+...+. .|.+.+-+.- .|+..+.-..|.+ ... ..++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 5544433 4555544321 1222222211111 000 115678877777
Q ss_pred EEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC--CEEEEEEcCCcEEEEEccccccccccccCCCcccccC
Q 001319 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1101)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1101)
+.......+.++|++-...+.......+ .+.-+.+-|++ ..|++.-.||.+.+|--.......+....
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~-------- 315 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA-------- 315 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch--------
Confidence 7777788999999999988888877655 34556666654 57899999999999975433111111100
Q ss_pred cceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecC-cccEEEeec
Q 001319 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS-AVGLLALGS 757 (1101)
Q Consensus 679 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~ 757 (1101)
.+ ......++..+...+ .-.+...+..|. ...+...-+
T Consensus 316 ---~l----------------------------------~~dl~~Q~~~vr~m~----~~rp~~~~~cPs~~sa~avl~s 354 (1062)
T KOG1912|consen 316 ---SL----------------------------------SMDLGEQVHVVRPME----EFRPVIGASCPSTPSALAVLYS 354 (1062)
T ss_pred ---hh----------------------------------ccccccceEEEeech----hcccceeecCCCChhhhhhhhh
Confidence 00 011112222222211 111122222333 333444556
Q ss_pred CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCe--EEEEECCCc
Q 001319 758 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTF 835 (1101)
Q Consensus 758 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~ 835 (1101)
+|.+.+|++..+............-..-++....... -..-.-+.+|.||.. +.|. +++--+...
T Consensus 355 ~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------v~k~~l~~LS~dg~h----~sGs~~~~~~p~p~~ 421 (1062)
T KOG1912|consen 355 SGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------VGKTSLISLSDDGSH----SSGSTCVRMRPMPEL 421 (1062)
T ss_pred cchhHHHhhhcCCcCcccccccccccccccccCceee---------hhhccccchhhcCCC----CCCceeeecccCccc
Confidence 6777788776433322221100000000000000000 000000111222200 0111 011000000
Q ss_pred eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEe--------
Q 001319 836 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-------- 907 (1101)
Q Consensus 836 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s-------- 907 (1101)
...... . +.-+-...- .++|.|.+.|+|.++|+.++..-..+..|.+.|.++.|..... |++.+
T Consensus 422 t~~~~~--p-~~n~~~~~~----pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~s 493 (1062)
T KOG1912|consen 422 TKVEND--P-GGNTPAGTV----PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSAS 493 (1062)
T ss_pred ceeecC--C-CCCccceee----eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccc
Confidence 000000 0 111111111 4889999999999999999999999999999999999986643 44433
Q ss_pred --CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCC-E
Q 001319 908 --ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAP-I 983 (1101)
Q Consensus 908 --~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~-v 983 (1101)
.-..+.+=|+.+|-.+.... ..+....+|+.+..|..+++|++. .+.-+.+||+.+..+++.... .-+ |
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~---l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~----a~P~i 566 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRG---LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL----ALPLI 566 (1062)
T ss_pred cceeeeEEEEEccccccccccc---CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh----cCCcE
Confidence 22457788999887544332 233333789999999999999994 689999999988877666544 445 8
Q ss_pred EEEEEc
Q 001319 984 SCAVYS 989 (1101)
Q Consensus 984 ~~v~~s 989 (1101)
+.+.|+
T Consensus 567 t~leWs 572 (1062)
T KOG1912|consen 567 TVLEWS 572 (1062)
T ss_pred EEEeec
Confidence 888888
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-18 Score=176.94 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=203.4
Q ss_pred CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcc-cccc
Q 001319 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND-LRQH 444 (1101)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~-~~~~ 444 (1101)
..++|||+...+.... +. -......+.++.|+.... .+|+.+.|..|++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~--------------~~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSE--------------YV---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCccc--------------cc---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 3799999876544321 00 111233499999998664 333445688899997654311 1111
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEE
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~w 523 (1101)
..+.+. .-.|++...... ++++|+..+.|+||| ....+.+.+++|+..|++|.+... ..+|++++..|.|.+.
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEE
Confidence 122222 233333333334 899999999999999 655566788999999999999764 4799999999999999
Q ss_pred ecCCCCeeeeccCC-CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC-CEEE
Q 001319 524 LYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFL 601 (1101)
Q Consensus 524 d~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 601 (1101)
.+.++.....+... +..|+-+.|++..+.+++... .+|.|.+||+....++..+...+..+...+||+|.. ..|+
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99888777776665 456779999999888776543 389999999998888887766666578889999965 4667
Q ss_pred EEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccC
Q 001319 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1101)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 670 (1101)
+.|.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||++....++..+..
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred EecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 78999999999999877776665432 6789999999999999999999999999877655555443
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=4e-18 Score=173.50 Aligned_cols=297 Identities=17% Similarity=0.245 Sum_probs=211.8
Q ss_pred CcccEEEEEeecCcc--cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 736 TSSKVVRLLYTNSAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~--~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
+...|++++|+|... .+++|...|.|-+||+..+....++... ...|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~---------------------f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL---------------------FTPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE---------------------eccCCccccceEec
Confidence 788999999999765 4555666799999998643322222111 11389999999999
Q ss_pred CCCC--eEEEEcCCeEEEEECCCceEEEEeeC--CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCC
Q 001319 814 KNDS--YVMSATGGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQ 888 (1101)
Q Consensus 814 ~dg~--~la~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~ 888 (1101)
|.+. .+.+..||+|++-|++++.....+.. .......+.|+. +...++.|..=|...+||+.++.. ...+.-|.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 9543 44444599999999987654333333 445577888988 555566666667999999997654 66778899
Q ss_pred CCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcC-
Q 001319 889 KRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS- 965 (1101)
Q Consensus 889 ~~V~~l~~s~d~-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~- 965 (1101)
..|..|+++|-. .+|+|+|.|++++|||+..-.......+.... |. ..|.+..|||++-.|++ +.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~-Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP-HR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc-cc-ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 999999999975 48899999999999999875544432233222 33 68999999998877777 669999999984
Q ss_pred ---CceeeeEeccCCCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 966 ---KMERIRQWTPQDALSA--PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 966 ---~~~~~~~~~~~~~h~~--~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
.......+.-.+.+.. ......|.||..++++|..-..|-|+|-..++.++.+..... ..+ +-..
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~---------~tI-~~vn 470 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES---------STI-PSVN 470 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc---------ccc-ccce
Confidence 3333333332222222 234568999999999999999999999999998887653221 111 1246
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.|+|.+..+++-++..|.|.||--+.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eecccccceeccCCccceEEEEecCC
Confidence 79996555666667788999986543
No 171
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=170.10 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=188.5
Q ss_pred CCCCCEeEEEecCCCCeEEEE--c-CCeEEEEECC----------------CceEEEEeeCCCCCeeEEEEecCCCCEEE
Q 001319 802 NLEEAVPCIALSKNDSYVMSA--T-GGKISLFNMM----------------TFKVMTTFMSPPPASTFLAFHPQDNNIIA 862 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~--~-dg~i~vwd~~----------------~~~~~~~~~~~~~~i~~l~~s~~~~~~la 862 (1101)
.|.+.+..+..++-|+-.+++ + .|.|.||++. ..+++.++.+|...-..++|||-....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 377777777777765544333 4 6999999984 23567788899999999999995445677
Q ss_pred EEeCCCcEEEEEeecceEE---EeeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 863 IGTEDSTIHIYNVRVDEVK---SKLKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 863 ~g~~dg~v~iwd~~~~~~~---~~~~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
+|.--+.|++|...+|.=. ..|.+|...|-.|+|||.. ..|+|||.||+|+|||+..+........ ..|. +.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~-sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHN-SD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccC-Cc
Confidence 8888889999999887432 4567899999999999964 5899999999999999999865544443 2333 68
Q ss_pred cceEEEcCCCCEEEEE-eCCeEEEEEcCC---ceeeeEeccCCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc
Q 001319 939 DTRVQFNADQVRMLVV-HETQLAIYDASK---MERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~-~d~~i~v~d~~~---~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
|..+.|+..-.+|++| +||.++|||++. ++.+..+..| ..+|++|.|+|.. ..+++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999999988885 489999999875 4566777765 9999999999854 567788899999999997532
Q ss_pred e---eEeeC---CCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEE
Q 001319 1014 L---RCYIA---PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 1014 ~---~~~~~---~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
- ..... ....-+...+=|...-.+-.+.|+++-+.++++.+-||- .||
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 1 00000 001112222335444455579999999999999999985 444
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=4.3e-17 Score=168.63 Aligned_cols=493 Identities=12% Similarity=0.102 Sum_probs=292.4
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEE------ecCCCceEEEEecCCceE
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~d~~~~~l~s~~~d~~v 477 (1101)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. .... .-....|....+ -..++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 467788899999888877776655544445554432 2211 111111111111 001111167888899999
Q ss_pred EEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 478 ~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.+-+..|+.-.....|.+.+.+-.|++ ||.-|+++++||.|++|. +++-...++......|.|++|.|+...++.|.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999899999999999999988 567799999999999997 44444555666777899999999999888875
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
.+.+.|=.+.....+-..+.|.+ .+-++.|++..+.+++||+|-..++||.. |..+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 55677777777777778888887 89999999999999999999999999975 444444444444 8999999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
+|+ ..++.++. +++++ +
T Consensus 236 npd-~~~~v~S~-nt~R~---~---------------------------------------------------------- 252 (737)
T KOG1524|consen 236 NPE-KDYLLWSY-NTARF---S---------------------------------------------------------- 252 (737)
T ss_pred ccc-cceeeeee-eeeee---c----------------------------------------------------------
Confidence 999 66666554 23331 0
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC-CCCCCCe--eeeccccccccCCccce
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE-QNPSGKA--TASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~ 794 (1101)
....+.|..+.|++||..+..++..|.+.+--.-... ....++. .....+.+-++.++...
T Consensus 253 ----------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d 316 (737)
T KOG1524|consen 253 ----------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQD 316 (737)
T ss_pred ----------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHH
Confidence 1145567778888888888888888776543221111 1111111 11112333344444331
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
.. .....+...++ .-..|+++....+++|.-........+.+....+.-+.- ..+++. ....-+|.+|.
T Consensus 317 ~L-----E~p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq---~ek~fl-i~dgsSi~lyt 385 (737)
T KOG1524|consen 317 IL-----EFPQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQ---GEKYFL-ILDGSSIWLYT 385 (737)
T ss_pred Hh-----hCccceeeeee--ceeEEEEEeccEEEEEecCCccCcEEEeccccchhHhhh---hhhheE-EecCcEEEEEE
Confidence 11 13445555543 345667777778888887766555555544333322222 122222 22334566666
Q ss_pred eecceEEE-eeccCCCCe---eEEEEcCCCCEEEEE--eCCCcEEEEEC-CCCccccceEEeecCCCCCCCcceEEEc--
Q 001319 875 VRVDEVKS-KLKGHQKRI---TGLAFSTSLNILVSS--GADAQLCVWSI-DTWEKRKSVTIHIPAGKTPTGDTRVQFN-- 945 (1101)
Q Consensus 875 ~~~~~~~~-~~~~h~~~V---~~l~~s~d~~~l~s~--s~Dg~v~lwd~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s-- 945 (1101)
........ .+.+..-++ ..+....| .|+.- .+...+.++|. .+|+.+..... ... . ..+..++..
T Consensus 386 yegR~~~np~~Pg~~~dlL~~rtlsLand--tLaird~ad~kvlhlFd~istgk~qgDgk~--L~h-k-~~IveIAldqk 459 (737)
T KOG1524|consen 386 YEGRLHLNPRYPGSQIDLLTWRTLSLAND--TLAIRDNADPKVLHLFDLISTGKRQGDGKS--LRH-K-QQIVEIALDQK 459 (737)
T ss_pred ecCceecCCCCCCcccccccceeeecccc--eEEeecCCCCeeEEeccCCCCCcccCCccc--cch-h-hhHHHhHhhcc
Confidence 54332211 111111100 12233222 33332 23345778888 66654322110 000 0 222223332
Q ss_pred --CCCCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 946 --ADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 946 --~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
++.+.++.- .++.+.|-...+...-..+... ..-|..++|+ |-.-+++|-.|+.+.||-+.+.
T Consensus 460 G~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtLawn-dttNiLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 460 GLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTLAWN-DTTNILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred CCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhhhhc-cccceeeeeccceEEEEEcCCc
Confidence 233334432 3455555555443322222211 5567888997 4455788999999999988764
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=9.7e-18 Score=162.89 Aligned_cols=228 Identities=14% Similarity=0.167 Sum_probs=167.8
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCe
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 826 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 826 (1101)
|+..++++.+.+.-|++||.-+++.. ++ -+.+|.. ..-....+++|+|||..|.+|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lr------aS--y~~ydh~------------de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLR------AS--YRAYDHQ------------DEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred CccceeeeccccCceeeeeccccccc------cc--hhhhhhH------------HhhhhheeEEecCCCCeEeecccce
Confidence 66777888888999999986543211 10 0111100 0122345799999999999999999
Q ss_pred EEEEEC-CCceEEE---Ee----eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcC
Q 001319 827 ISLFNM-MTFKVMT---TF----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 898 (1101)
Q Consensus 827 i~vwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 898 (1101)
|++||+ ..|..-. ++ .+..+-|.+++|+|.+.+.+|+|+...++-||.-..+.++..+-+|.+.|+.|.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 999999 4443211 11 123567899999998888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcce--EEEcCCCCEEEEE-eCCeEEEEEcCC-ceeeeEe
Q 001319 899 SLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR--VQFNADQVRMLVV-HETQLAIYDASK-MERIRQW 973 (1101)
Q Consensus 899 d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~d~~~l~~~-~d~~i~v~d~~~-~~~~~~~ 973 (1101)
||+.|.+|+. |-.|..||+...... +-.+.++....-.. ....|++.+|++| .||.|++||+++ +..+..+
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~p----v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDP----VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccch----hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 9999999885 677999999864321 11122222112223 4447899999997 599999999998 6656555
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCC
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCD 1001 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~d 1001 (1101)
..+ ...+..+++.|-=.++++++..
T Consensus 337 ~~~---sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 337 GNY---SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccc---cccccceecCcccceeeeccCc
Confidence 554 8889999999997778877744
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=2.1e-17 Score=164.97 Aligned_cols=233 Identities=13% Similarity=0.215 Sum_probs=182.7
Q ss_pred ccccCCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
.+.||+++|..++|+| +...||+|+.|.+|.||.+-.+... .....|.||...|--++|.|-..+ +|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5889999999999999 7789999999999999998654332 334478999999999999999887 899999999
Q ss_pred eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC-ceEEEEEccCCCEE
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRL 553 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l 553 (1101)
+|.+|| .+|+.+.++. |.+.|.++.|+. ||.++++++.|+.||+||.++++...+-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999 9999888888 999999999977 778999999999999999999998887766644 556677888998 6
Q ss_pred EEeecCCCCCceEEEEeCCCCee---EEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCee-eEeeccCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGG 628 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1101)
++.+.++-.+.++-+||...-+. ...+... ..+-.--|.+|.+.++.+| .|+.|+-|.+....+ ++.+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 66666777788999999765432 3333332 2355556788888887766 899999999977653 222222222
Q ss_pred CCCCCeeEEecC
Q 001319 629 LPNLPRLRFSKE 640 (1101)
Q Consensus 629 ~~~v~~v~~s~~ 640 (1101)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 223456666664
No 175
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.9e-15 Score=163.49 Aligned_cols=575 Identities=11% Similarity=0.086 Sum_probs=338.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-----
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd----- 417 (1101)
|...-.++.|+|.| |+|-|+. ..|.+-|..+-+.+. .+..|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44457889999999 6787754 578888988777664 26678999999999883
Q ss_pred -------CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec---CCCceEEEEecCCceEEEEE-cCCce
Q 001319 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 418 -------g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.-.||++...|.|.+||...+..+. .+..|.++|.+++|-+ +.+. +|++-....++.+|+ .+|..
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2367888889999999999887665 5778999999999976 3434 666667788999999 99999
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC------CeeeeccCC-CC--------------------
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------GSRVDYDAP-GH-------------------- 539 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~~-~~-------------------- 539 (1101)
............++.+.|-.. ..+..-+..|.+.+-+.-.. ...+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888877666777788776543 34444455566655543211 111111111 00
Q ss_pred -----ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC--CEEEEEeCCCcEEEE
Q 001319 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1101)
Q Consensus 540 -----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw 612 (1101)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..|++...||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123567786655444443 66799999999888888776555 45567777765 568889999999999
Q ss_pred ECCCC----------------eeeEeeccCCCCCCCCeeEEecC-CCEEEEEEcCCcEEEEEccccccccccccCCCccc
Q 001319 613 DMDNV----------------NILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1101)
Q Consensus 613 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 675 (1101)
-.+.. +....+..-... ........|. ...++.--.+|.+.+|.+.++........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 76542 112222111111 1122233343 44555556678888998876522111111000000
Q ss_pred -----c-----cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEe
Q 001319 676 -----L-----RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLY 745 (1101)
Q Consensus 676 -----~-----~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 745 (1101)
. .....-..++.||..- ++ .......... ..+-..-
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sG---------------s~~~~~~p~p---------------~~t~~~~ 426 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SG---------------STCVRMRPMP---------------ELTKVEN 426 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CC---------------ceeeecccCc---------------ccceeec
Confidence 0 0000001111111000 00 0000000000 0000111
Q ss_pred ecCc-------ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 746 TNSA-------VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 746 s~~~-------~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
.|.| ..++.|++.|+|.++|+..+.... .+. -|...|.++.|-.+.++
T Consensus 427 ~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~-----------------------~fs--vht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 427 DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA-----------------------SFS--VHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred CCCCCccceeeeeEEeecCCceEEEEEecchhhhh-----------------------hhc--ccccceeeeeeccceeE
Confidence 1111 235667778999999876432211 111 28888999998877766
Q ss_pred EEEEc----------CCeEEEEECCCceEEE--EeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe--
Q 001319 819 VMSAT----------GGKISLFNMMTFKVMT--TFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-- 883 (1101)
Q Consensus 819 la~~~----------dg~i~vwd~~~~~~~~--~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~-- 883 (1101)
+-.+. .+.+.+-|+.+|.... .+++ ...+|+.+..|. .++||+..-.|.-+.+||+++..+++.
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS 560 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMS 560 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHh
Confidence 65442 1347888998886543 2233 346799999999 899999999999999999965322110
Q ss_pred ------------eccC------------------------CCCe---------------------------eEEEEcCCC
Q 001319 884 ------------LKGH------------------------QKRI---------------------------TGLAFSTSL 900 (1101)
Q Consensus 884 ------------~~~h------------------------~~~V---------------------------~~l~~s~d~ 900 (1101)
+..| ...| -+++| .+
T Consensus 561 ~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~ 638 (1062)
T KOG1912|consen 561 LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KD 638 (1062)
T ss_pred hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cC
Confidence 0000 0111 11222 35
Q ss_pred CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCC
Q 001319 901 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS 980 (1101)
Q Consensus 901 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~ 980 (1101)
..|+.|..+|.+.+||+............ +.........+-|....+++-....+-+||.+....+..+.+.+. .
T Consensus 639 d~lv~GD~~GNl~~WDlg~R~SRg~~d~p----~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-s 713 (1062)
T KOG1912|consen 639 DILVVGDVEGNLVVWDLGRRQSRGVRDSP----DPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-S 713 (1062)
T ss_pred CeeEeecccCceeEEecccccccCccCCC----CchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-c
Confidence 67999999999999998765332211111 111233334445554456666667899999999988888855422 3
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 981 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 981 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
..+..+.+......++ ..|..+|+-.+..........
T Consensus 714 frlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~~ll~~ 750 (1062)
T KOG1912|consen 714 FRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSPPLLPK 750 (1062)
T ss_pred eEEEEEEecccCceec--CCCCceeEEeccccCCccccC
Confidence 4455555544333333 334478877776655444333
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.1e-18 Score=194.36 Aligned_cols=259 Identities=12% Similarity=0.165 Sum_probs=200.0
Q ss_pred eecCCCcEEEEEEecCCce---EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 340 SLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~---llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+.-...-..++|.+.|.. ++|.|..||.|.+||...- +..... + .......|.+.|..+.|++
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----------~-~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----------E-VLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch----------H-HHhhhcccCCceeeeeccc
Confidence 3445668889999998876 6899999999999998652 110000 0 1124677999999999999
Q ss_pred CCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 417 DGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 417 dg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
.+. +||+|+.||.|.|||++.-+...... -..-.+.|.+++|+..-.+ +|++++.+|.+.||| ...+.+..+..|.
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCC
Confidence 766 99999999999999998754333111 1234568999999988776 899999999999999 6666777776655
Q ss_pred c--CeEEEecccCCCccEEEEeccCC--eEEEEecCCCCe-eeeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEE
Q 001319 495 A--PVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 495 ~--~v~~v~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~i 568 (1101)
+ .+..++|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ +++++++. |+.|.+
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~ 280 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIIC 280 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeE
Confidence 4 47889999986544444444443 699999876544 45667899999999999977 77778775 999999
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCCe
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1101)
|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 281 wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999988444 788899999776 66668899999999987654
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=188.79 Aligned_cols=281 Identities=17% Similarity=0.265 Sum_probs=215.9
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
..++++|-..|+|++|...|+| +++|+.|..|+||..+++.++.. ..||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 3466789999999999999986 48999999999999999988763 899999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeE----Eeec
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF----NFEG 492 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~----~~~~ 492 (1101)
+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-..+. .+..
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999998777 68899999999999985 46788999999994322111 1111
Q ss_pred -CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCceEEEEe
Q 001319 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 493 -h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd 570 (1101)
...-+.++.| ..++..+++++.|+.-+.|.+.-... +...+.-+.++.|-. +.++.- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeee
Confidence 1233445544 33567789999999998886542211 111122222222322 233332 267788999
Q ss_pred CCCCeeEEEecccCCcceEEEEEeCCCCEE-EEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
+.+|...+...+|.. .+..+.++|-+..+ .+++.||...|||+-.|.+++.+... ...+...+||++|..++....
T Consensus 382 l~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred cccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCC
Confidence 999999999999987 78889999976555 45899999999999998888776532 336788899999999999888
Q ss_pred CCcEEEEEcccc
Q 001319 650 DNGFKILANAIG 661 (1101)
Q Consensus 650 d~~i~iwd~~~~ 661 (1101)
-|.++|.....+
T Consensus 459 hgql~i~g~gqs 470 (1113)
T KOG0644|consen 459 HGQLYILGTGQS 470 (1113)
T ss_pred CCceEEeccCCC
Confidence 899998876544
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=171.02 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=129.0
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48999999999999999999999999999999999977766543 3499999999999997655589999999999999
Q ss_pred EcCC-----------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----------eccCCCC
Q 001319 481 ELSG-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGH 539 (1101)
Q Consensus 481 d~~~-----------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~ 539 (1101)
|.+. .....+..|...|..++..|.. ...+.++++||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9331 2345567799999999876643 2789999999999999998633211 1111112
Q ss_pred ceEEEEEccCCC-EEEEeecCCCCCceEEEEeC
Q 001319 540 WCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 540 ~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~ 571 (1101)
...++.++|... +|++|+. +...++||.
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhh
Confidence 457899999665 5666664 788999995
No 179
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=9.4e-17 Score=156.31 Aligned_cols=388 Identities=12% Similarity=0.090 Sum_probs=237.5
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE-ECC
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTK 427 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~-~~d 427 (1101)
-++|||+|+| +|+.+ +..+.|=|..+-+... +-..-+.|..+.|+.|..+++.+ ..|
T Consensus 13 ~c~fSp~g~y-iAs~~-~yrlviRd~~tlq~~q--------------------lf~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLS-RYRLVIRDSETLQLHQ--------------------LFLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeee-eeEEEEeccchhhHHH--------------------HHHHHHHhhheeeeccceeeeeeeecc
Confidence 4789999996 47764 4588888887755433 11124578899999999888765 568
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCC
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~ 507 (1101)
+.|.+|++...+-.. .+.....++.++.|||||+. +|.+...|-.|.||....+...-+......+..++|++ |
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~--d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP--D 144 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecccccCceeEEECC--C
Confidence 899999998765444 45667788999999999987 78888899999999944444444554555678899977 6
Q ss_pred ccEEEEeccCCeEEEEecC---CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 508 IQFIFSTAIDGKIKAWLYD---TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 508 ~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
|++.+..+.-......++. .-.....+.......+.+.|+|||..+++ ||.--.-.+..+ +.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV-------------wd~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV-------------WDNVLEYKVYAY--ER 209 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE-------------ecchhhheeeee--ee
Confidence 6787776653221111111 11122233444455788999999998876 432211111122 12
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC-----------------CCCeeEEecCCCEEEEE
Q 001319 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP-----------------NLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~v~~v~~s~~g~~l~~~ 647 (1101)
+-.+..+.|+|.++++++|+.|+.+++.+--+-+.+..+-...... ...++.|.|.
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~------- 282 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT------- 282 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC-------
Confidence 2257779999999999999999999987654444333321110000 0011222211
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
|-...+|..... .++.. ...+++.. ..-.
T Consensus 283 --~~~a~~~~~se~----------~YE~~---~~pv~~~~------------------------------------lkp~ 311 (447)
T KOG4497|consen 283 --DLEAHIWEESET----------IYEQQ---MTPVKVHK------------------------------------LKPP 311 (447)
T ss_pred --ccccCccccchh----------hhhhh---hcceeeec------------------------------------ccCC
Confidence 001111111000 00000 00000000 0000
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecC--CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
...++ ....+..++|++|..++++-.+. +.+-+||++. -++.... ....
T Consensus 312 tD~pn---Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~----------------------l~l~avL----iQk~ 362 (447)
T KOG4497|consen 312 TDFPN---PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN----------------------LKLHAVL----IQKH 362 (447)
T ss_pred CCCCC---cccccceeeecCCceEEeeecCCCCceEEEEechh----------------------hhhhhhh----hhcc
Confidence 01111 34456789999999988887765 5666666542 2211111 1567
Q ss_pred CEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 806 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
+|....|.|....|+... ...+++|.......+. ..+..-.|..+.|.- +|..++..+.|.
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecC-CCcEEEEEcCCc
Confidence 899999999988888776 5669999886544443 333456799999998 888888888775
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-15 Score=142.60 Aligned_cols=287 Identities=12% Similarity=0.124 Sum_probs=201.0
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
..|.+-+++|.+++++++..+|.|.+..+..-.... . ...|+... ++..+|..++..++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk~~i--v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGKLKI--VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCCcce--eeccccCCCeeeeeee--hh
Confidence 345566889999999999999999999876321100 0 01111111 1223599999999997 46
Q ss_pred eEEEEcCCeEEEEECCCce------EEEEee-------CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 818 YVMSATGGKISLFNMMTFK------VMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~------~~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
+|+++.||.|+-|...... ...+.. ..-..|.++-..|..+.++. ++.|+.++-||+.+|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 7888889999988654221 111111 12346899999995555554 448999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC----CCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG----KTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 885 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
+||++-|.++.--.....+.||+.||++|+||..+++............ +....| .+..-+..+|++|....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCcee
Confidence 9999999999986666678999999999999999988766554322111 111222 4555677889999999999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
+|.+...++...+.. ..++..+.|- ...++++++.+.|.-|.+. |.+...+.. .++.. ++.
T Consensus 231 lwhLrsse~t~vfpi----pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~----------~s~~c--~s~ 291 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI----PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV----------ESTAC--YSA 291 (325)
T ss_pred EEeccCCCceEEEec----ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC----------Cccce--eee
Confidence 999999999988887 6788999996 4468888888899999885 555554442 11111 234
Q ss_pred EEecCCCCEEEEEECCCeEEEEe
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVME 1063 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iWd 1063 (1101)
.|+..--.+|-.++..+.+.|+.
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccCCceEEEEecccceeeeeee
Confidence 44332134566667777777764
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.1e-17 Score=175.21 Aligned_cols=264 Identities=14% Similarity=0.221 Sum_probs=189.2
Q ss_pred eec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 340 ~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
++. |.+.|++++|.|... .|++++.||.|.+|+++....-... ...+..+|.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCCc
Confidence 444 999999999999988 5689999999999999432111111 111334699999999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCc-------ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee
Q 001319 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 491 (1101)
+++.+|+.||+|+.|++.... .......+.||++.|+.+++++... .|++|+.||+++.|+.++....++.
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccC
Confidence 999999999999999664211 1112225779999999999999888 6999999999999994333334443
Q ss_pred cCC--cCeEEEecccCCCccEEEEeccCCeEEEE---ecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecC
Q 001319 492 GHE--APVYSICPHHKENIQFIFSTAIDGKIKAW---LYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 492 ~h~--~~v~~v~~~~~~~~~~l~s~~~d~~i~~w---d~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
... +.-.++.+... .++....+...+.+ +++.......+... ...+.-+...|.+...+++..
T Consensus 435 ~~~e~g~Plsvd~~ss----~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSS----RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred CccccCCcceEeeccc----hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence 322 22344444321 11112222333333 33333333322211 124667888888888888875
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
+..|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 ---d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ---DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 88999999999999999998887 8999999999999999999999999999777666554433
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.1e-17 Score=173.12 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=190.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeec-----CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
++..|.+.|..++|.|-...|++|+.||+|++|+++ ++..+.++.++.+|.++|.|+++.+.+. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 577899999999999999999999999999999993 3345667778999999999999999999 799999999
Q ss_pred eEEEEE-c------CC----ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC--CCCceE
Q 001319 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCT 542 (1101)
Q Consensus 476 ~v~iwd-~------~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~ 542 (1101)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ......
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995 1 11 2236788999999999998866 4699999999999998765544 22222 222344
Q ss_pred EEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC------CcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 543 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
++.+....-.+..++. .-+.-.+++.+.+.....+.... ...+..+..+|.+...+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 5555433312222111 12222334444444444443221 12466788999999999999999999999999
Q ss_pred CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++++.....+. ..++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 99988877654 47899999999999999999999999998654
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=7.5e-17 Score=152.47 Aligned_cols=308 Identities=14% Similarity=0.165 Sum_probs=196.1
Q ss_pred eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
+.+.+..+...++++.|-.+++ |+++.. .|.|.+|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4455667778899999988887 556553 8899999999999999998777667888888886 688899999999
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC-cEEEEEccccccccccccCCCcccccCcceeeeeeec
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1101)
.+|++..+..+..-.. .++.+.|.+-. +...+... ....++-+.... ...... ..-..+.+.++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~-------g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG-------GDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhcc-------CccceeEccCc
Confidence 9999987554433221 23444444321 11111000 011111110000 000000 00000111111
Q ss_pred cccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee-cCcc--cEEEeecCCeEEEEE
Q 001319 689 ASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAV--GLLALGSNGVQKLWK 765 (1101)
Q Consensus 689 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~--~l~~~~~dg~v~~w~ 765 (1101)
.. .+..+.+.+..+. ..+. .++++-++|.+.+||
T Consensus 145 ~~-------------------------------------------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd 181 (323)
T KOG0322|consen 145 SE-------------------------------------------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD 181 (323)
T ss_pred hh-------------------------------------------ccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence 00 1122223222211 1122 255666789999999
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCC--ce--EEEE
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT--FK--VMTT 840 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~--~~--~~~~ 840 (1101)
+..+.... +............ .|..+|.++.+.+.-..=++|+ +.++..|+++. +. ...+
T Consensus 182 ~S~~~~~~-------------~~~~~~kv~~~~a--sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 182 LSTGDKII-------------QLPQSSKVESPNA--SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred ccCCceee-------------ccccccccccchh--hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 87642110 1111111111112 3899999999986544445555 67788887753 32 2333
Q ss_pred eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 841 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 841 ~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+......|..+.+-| |++++|+++.|++|+||+..+...+..++-|.+.|++++|+||...+|.++.|++|.+|++
T Consensus 247 ~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 444456789999999 9999999999999999999999999999999999999999999999999999999999986
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-16 Score=156.75 Aligned_cols=296 Identities=12% Similarity=0.134 Sum_probs=210.2
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc-ccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
-.++|.+.|.++.||.+|+ +||+|+.|..+++|+++..-..+. +++.+ .-..|...|.|++|...
T Consensus 51 D~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccC
Confidence 3467999999999999998 679999999999999864221111 11111 12346789999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-ee--EEeecC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KL--FNFEGH 493 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-~~--~~~~~h 493 (1101)
.++|.+|+.+++|..-|+++.+.+.... -....+.|+.+..+|-.. .|++.+.++.|.+|| .... .+ ..+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 9999999999999999999987665221 122345899999999977 899999999999999 4332 22 222233
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee-------ccCCCCceEEEEEccCCCEEEEeecCCCCCceE
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
......+.|+|.. ..+|++.+..+-+-+||++....... +......-.++.|+|.|..+++.-. ...-
T Consensus 194 ~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P 268 (609)
T KOG4227|consen 194 GKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCP 268 (609)
T ss_pred CccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCC
Confidence 4456777888764 36889999999999999876544321 1111223367889999999988653 4445
Q ss_pred EEEeCCCCee-EEEecccCC-----cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe----------------------
Q 001319 567 VEWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------------------- 618 (1101)
Q Consensus 567 ~iwd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------- 618 (1101)
.+||+-+.++ +..+..... ..+.+++|-.|- .+++|+.+-.|++|.+....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 6788877444 333331111 134557776654 58899999999999875311
Q ss_pred -eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
.+..+.+| ..-++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 348 ~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 12233333 4467899999999999999999999999754
No 185
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.2e-17 Score=168.23 Aligned_cols=293 Identities=17% Similarity=0.234 Sum_probs=226.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg 418 (1101)
-+|.+.|..|.|...|. ++++|+.|..|.+||+..+..... ...||...|....|-| +.
T Consensus 139 ~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred cCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCC
Confidence 34999999999999998 679999999999999998876542 4678999999999988 56
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe---ecCC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGHE 494 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~---~~h~ 494 (1101)
+.|++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.|++.|+.+.-.| ..+.....+ ..+.
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCC
Confidence 78999999999999877544444333457789999999999999887 799999999999999 555443222 2233
Q ss_pred c---CeEEEecccCCCccEEEEeccCCeEEEEecCCCCee------eec------cCCCCceEEEEEccCCCEEEEeecC
Q 001319 495 A---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDY------DAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 495 ~---~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~------~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
. ....++..|.. ...+++++.|..+++||.+.-... ..+ ....-.|++++|+.++.-+++...
T Consensus 279 ~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn- 356 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN- 356 (559)
T ss_pred ccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-
Confidence 3 46778887764 358899999999999997653322 111 122336899999976665555443
Q ss_pred CCCCceEEEEeCCC--C----------eeE-EEecccCCcc-eEEE-EEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 560 KDGDSFLVEWNESE--G----------TIK-RTYAGFRKKS-NGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~-v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+-.|+++.... | ..+ +.++||.+.. |..+ -|.|...++++|+.-|.|.||+-.+++.+..+.
T Consensus 357 ---De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 357 ---DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred ---ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 66788885432 2 222 3388887632 3333 467888999999999999999999999999998
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
+..+ -|+|+.-+|--..||+.+-|..|+||...+
T Consensus 434 gDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 434 GDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 8776 699999999999999999999999998643
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=2.5e-15 Score=155.73 Aligned_cols=207 Identities=16% Similarity=0.165 Sum_probs=157.5
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~ 438 (1101)
.++.++.||.+.|.+-. ++... ....|.++|.|-.|+|||.-|++++.||.|++|.-...
T Consensus 77 ~~~i~s~DGkf~il~k~-~rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred eEEEEcCCceEEEeccc-chhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch
Confidence 34667889999888743 43332 36779999999999999999999999999999997652
Q ss_pred cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC
Q 001319 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1101)
Q Consensus 439 ~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d 517 (1101)
++. ++.....+|.|++|.|+... .+.+.+ +.+.|=- .....+-.++.|.+-|.++.|++.. +++++|++|
T Consensus 137 --LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED 207 (737)
T KOG1524|consen 137 --LRS--TVVQNEESIRCARWAPNSNS-IVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGED 207 (737)
T ss_pred --HHH--HHhhcCceeEEEEECCCCCc-eEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc--cceeecCCc
Confidence 332 34466779999999999986 444433 3444444 4444566788999999999998855 699999999
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1101)
-..++||- -+...+.-..|..+|++++|.|+ +.++.++ -++++ +.....+.+..++|++||
T Consensus 208 ~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-----~nt~R------------~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 208 FRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWS-----YNTAR------------FSSPRVGSIFNLSWSADG 268 (737)
T ss_pred eeEEeecc-cCcccccCChhccceeeeeeccc-cceeeee-----eeeee------------ecCCCccceEEEEEcCCC
Confidence 99999984 45666677778889999999999 5555554 22333 333334478889999999
Q ss_pred CEEEEEeCCCcEEEEE
Q 001319 598 NHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd 613 (1101)
..+++|...|.+.+-.
T Consensus 269 TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 269 TQATCGTSTGQLIVAY 284 (737)
T ss_pred ceeeccccCceEEEee
Confidence 9999999998876643
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1e-14 Score=160.76 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=170.6
Q ss_pred EEEeccCCeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCee--EEEecccC
Q 001319 511 IFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI--KRTYAGFR 584 (1101)
Q Consensus 511 l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~--~~~~~~~~ 584 (1101)
.++...++.|.+|++.+... ...+. .......++++|++++|++++. .++.|.+|++. +++. ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~-- 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPL-- 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecC--
Confidence 34457789999999964322 22222 3345778999999999988764 36789999986 3433 222221
Q ss_pred CcceEEEEEeCCCCEEEEEe-CCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccc
Q 001319 585 KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~ 661 (1101)
......++++|+++++++++ .++.|.+|++.+ +..........+......++++|+|+++++++ .++.|.+||+.+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 12456799999999999876 588999999964 32211111111122457789999999887655 4689999998653
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
.. +....... ...
T Consensus 159 g~-l~~~~~~~-------------------------------------------------------~~~----------- 171 (330)
T PRK11028 159 GH-LVAQEPAE-------------------------------------------------------VTT----------- 171 (330)
T ss_pred Cc-ccccCCCc-------------------------------------------------------eec-----------
Confidence 11 10000000 000
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
........++|+|||+++++
T Consensus 172 ------------------------------------------------------------~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 172 ------------------------------------------------------------VEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred ------------------------------------------------------------CCCCCCceEEECCCCCEEEE
Confidence 00111335677777777665
Q ss_pred Ec--CCeEEEEECCC--c--eEEEEeeCC------CCCeeEEEEecCCCCEEEEEeC-CCcEEEEEeecceEEEeeccCC
Q 001319 822 AT--GGKISLFNMMT--F--KVMTTFMSP------PPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 822 ~~--dg~i~vwd~~~--~--~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~ 888 (1101)
+. +++|.+|+++. + +.+..+... ......+.++| ++++|+++.. ++.|.+|++.......++.+|.
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 54 56677777652 2 223333221 11234688999 8888888764 7899999997543222222221
Q ss_pred ---CCeeEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001319 889 ---KRITGLAFSTSLNILVSSGA-DAQLCVWSID 918 (1101)
Q Consensus 889 ---~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~ 918 (1101)
.....++++|||++|+++.. +++|.+|+++
T Consensus 271 ~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 24568999999999998775 8999999885
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7.7e-17 Score=163.63 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=159.7
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
.+++|+. ++..|++|+.||++|||++.+...+.....|.+.|.+|.|||||+.|++.+.| ..+||++.++.......-
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7799999 89999999999999999999888888888999999999999999999999999 899999999854433321
Q ss_pred eecCCCCCCCcceEEEcCCC---CEEEEE---eCCeEEEEEcCCcee--eeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 929 HIPAGKTPTGDTRVQFNADQ---VRMLVV---HETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~---~~l~~~---~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
...+.....+.|+.|+ .+.+.. ..+.|+.|++...+. +..+.....-...|++++.|+||++++.|+.
T Consensus 226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 1122456778888877 333332 256677777654332 1111111111457999999999999999999
Q ss_pred CCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1001 DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1001 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
||.|.|++..+.+...... +.|...++.+.|+| |.+++++.+.|.+..|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk-----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 9999999999998887776 67888999999999 7999999999999999888653
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.4e-14 Score=159.80 Aligned_cols=273 Identities=13% Similarity=0.173 Sum_probs=177.9
Q ss_pred eEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEee
Q 001319 358 TLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSY 435 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~ 435 (1101)
+++++...++.|.+|++.+ ++.... ..+. +.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLL-----------------QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeee-----------------eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3555667899999999964 332110 0121 335677899999999987765 5788999999
Q ss_pred cC-CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCc---eeEEeecCCcCeEEEecccCCCcc
Q 001319 436 AG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQ 509 (1101)
Q Consensus 436 ~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~---~~~~~~~h~~~v~~v~~~~~~~~~ 509 (1101)
+. ++ +...... ...+....++|+|+++. ++++...++.|.+|+ . .+. .+..+.+. .....++++| +++
T Consensus 65 ~~~g~-l~~~~~~-~~~~~p~~i~~~~~g~~-l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p--~g~ 138 (330)
T PRK11028 65 ADDGA-LTFAAES-PLPGSPTHISTDHQGRF-LFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDP--DNR 138 (330)
T ss_pred CCCCc-eEEeeee-cCCCCceEEEECCCCCE-EEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCC--CCC
Confidence 73 33 2211111 23345678999999994 333344588999999 3 332 23333322 3356677766 556
Q ss_pred EEE-EeccCCeEEEEecCCCCeeee-----c-cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC--C--eeEE
Q 001319 510 FIF-STAIDGKIKAWLYDTMGSRVD-----Y-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--G--TIKR 578 (1101)
Q Consensus 510 ~l~-s~~~d~~i~~wd~~~~~~~~~-----~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~--~~~~ 578 (1101)
+++ +...++.|.+||+++...... . ...+.....++|+|+|++++++.. .++.|.+|++.. + +.+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 555679999999986432211 1 112345678999999999988764 478999999873 3 2343
Q ss_pred EecccCC-----cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCe----eeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 579 TYAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 579 ~~~~~~~-----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
.+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332111 1123488999999999985 47899999986432 22222221 1346899999999999887
Q ss_pred c-CCcEEEEEccc
Q 001319 649 A-DNGFKILANAI 660 (1101)
Q Consensus 649 ~-d~~i~iwd~~~ 660 (1101)
. +++|.+|++..
T Consensus 293 ~~~~~v~v~~~~~ 305 (330)
T PRK11028 293 QKSHHISVYEIDG 305 (330)
T ss_pred ccCCcEEEEEEcC
Confidence 6 89999998753
No 190
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.6e-16 Score=154.63 Aligned_cols=282 Identities=14% Similarity=0.178 Sum_probs=190.0
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--C-CceE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--G-HWCT 542 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~-~~v~ 542 (1101)
.++++-..|.|++|| .+|+.+..++++...++.+.|.....+..+.+++.||+|++||++.......+... . .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 577788899999999 88999999999999999999987555678999999999999999987765544332 2 3566
Q ss_pred EEEEccCCCEEEEeecCCCCCceEEEEeCCCCee-EEEecccCCcceEEEEEeCC-CCEEEEEeCCCcEEEEECCCCe--
Q 001319 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVN-- 618 (1101)
Q Consensus 543 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-- 618 (1101)
+++..-.++.+++|..-.+.+-.|.+||.+..+. ++.+...+...|++++|+|. .+.|++|+.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7776667788888776555677899999998765 66665544558999999995 4788899999999999987542
Q ss_pred --eeEeeccCCCCCCCCeeEEecCC-CEEEEEEcCCcEEEEEccccccccccccCCCccc-ccCccee----e-eeeecc
Q 001319 619 --ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEA-LRTPIES----V-ALKVSA 689 (1101)
Q Consensus 619 --~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~----~-~~s~~~ 689 (1101)
++.++. ....|.++.|..++ +.|.+-+...+..+|+++.+.. ...+....... ....... + ..+|.+
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 222332 23368899999877 4588888999999999998742 22222211100 0000000 0 111211
Q ss_pred cc-ccccCC-CCCcceeccCCCCCCceEEEEEEe---CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 690 SS-AVSSGT-PANCKVERSSPVRPSPIILAEIVD---SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 690 ~~-l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
.. .+.+.+ .+.. .++.+.+ ......+.... .+|..-|.++.|...+..+++++.||.+.+|
T Consensus 278 ~~~~~l~g~~~n~~-------------~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 278 KDTCALAGTDSNKG-------------TIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred cceEEEeccccCce-------------eEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 11 111111 1111 1222221 11111111122 4466777888888899999999999999999
Q ss_pred Ee
Q 001319 765 KW 766 (1101)
Q Consensus 765 ~~ 766 (1101)
..
T Consensus 344 k~ 345 (376)
T KOG1188|consen 344 KV 345 (376)
T ss_pred ec
Confidence 74
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=3.5e-16 Score=149.71 Aligned_cols=206 Identities=21% Similarity=0.358 Sum_probs=158.3
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~ 420 (1101)
+.+.|.||.|.|++..+ |+ -.|..|.+|+++.+..+. ..+ ....-.+|+...++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~kl-as-m~dn~i~l~~l~ess~~v-aev------------~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKL-AS-MDDNNIVLWSLDESSKIV-AEV------------LSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCee-EE-eccCceEEEEcccCcchh-eee------------cccccccccceecccccCCCCccce
Confidence 55699999999999875 43 358999999999877632 111 1111233677889999999 8888
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~ 498 (1101)
+++. .|+++..||+.+.++...+ -..|...|..+.|+|+-++ +|++|++||.|+||| .+..++.++.+|...|+
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8876 5789999999987765543 2478889999999999887 899999999999999 67778999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCC-----------------------------eeeeccCCCCceEEEEEccC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~d 549 (1101)
++.|+|..| ++|++++.|..|.+|....-. .+.++..|...|.+++||.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999999866 799999999999999643211 11245567778999999886
Q ss_pred CCEEEEeecCCCCCceEEEEeC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..++++.-. -||.+.|=.+
T Consensus 342 dPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred CCeeEEEec---cCceEEeecC
Confidence 666554322 2666665443
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.2e-15 Score=151.70 Aligned_cols=299 Identities=15% Similarity=0.174 Sum_probs=218.1
Q ss_pred eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC------CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 533 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
.+..|.+.|.++.||.++++|++|+. +..+++|+++ +.+++.....|+...|.+++|.....++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 45567888999999999999999986 8889999975 4567777766665689999999999999999999
Q ss_pred CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeee
Q 001319 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1101)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1101)
++|...|+++.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||..........+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---------------- 190 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---------------- 190 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee----------------
Confidence 9999999999999988877666678999999999999999999999999998765221111100
Q ss_pred eccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccE-EEeecCCeEEEEE
Q 001319 687 VSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWK 765 (1101)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~~w~ 765 (1101)
.........+.|+|....| ++.+..+.+-+||
T Consensus 191 -----------------------------------------------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 191 -----------------------------------------------ANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred -----------------------------------------------cCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 0022334556777766544 4555568888998
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCC-eEEEEECCCceEEEEeeCC
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG-KISLFNMMTFKVMTTFMSP 844 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg-~i~vwd~~~~~~~~~~~~~ 844 (1101)
........... +.... ++ .....-..+.|+|+|..+.+-..+ .-.+||+-+..+...-..|
T Consensus 224 ~R~~~~~~~~~--------------~~~~~--L~--~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 224 RRMQARPVYQR--------------SMFKG--LP--QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred eccccchHHhh--------------hcccc--Cc--ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 76432211100 00000 00 012334568899999988777644 4667787764443222222
Q ss_pred C-------CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-----------------------eEEEeeccCCCCeeEE
Q 001319 845 P-------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-----------------------EVKSKLKGHQKRITGL 894 (1101)
Q Consensus 845 ~-------~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-----------------------~~~~~~~~h~~~V~~l 894 (1101)
. ..+.+++|.. | .-+++|+.+-.|++|.+... +.+..++||..-++.+
T Consensus 286 N~~GY~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCcceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 2 2477888875 4 45899999999999998631 2345789999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC
Q 001319 895 AFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 895 ~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
.|+|...+|++.+....+++|.--
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecCCcceEeccchhhheeccccc
Confidence 999999999999999999999754
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.1e-15 Score=139.68 Aligned_cols=280 Identities=17% Similarity=0.236 Sum_probs=189.6
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.|.+-++||.+++ |+.|..+|.|.+..+..-..-.. ......+--...+|+++|+.++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 5777889999995 58899999999999864211110 000111112357899999999998 45666665
Q ss_pred CCCeEEEEeecCCcc---ccccee--eeccc-----CcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 426 TKHLIQLYSYAGSND---LRQHSQ--IDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~---~~~~~~--l~~h~-----~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
||.|+-|....... .+...+ ...|. -.|+++-..|.... ++.++.|+.++-|| .+|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998864332 111111 11222 35889999988773 55555799999999 9999999999999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC----------CCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
+.|.+++--.. + ..+++|++||++|+||.++.++...+..- +.+|.+++ -+..++++|+ ..
T Consensus 157 DYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-----CC
Confidence 99999986322 2 46889999999999999999887665432 22455555 4566888875 56
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC-CE
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~ 643 (1101)
.+.+|.++..++...|.-.. .+..+.|.. +.++++|+.+.|.-|.+. |.+....+...+ ......|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 79999999988888776432 355566654 578888888899999874 544444444332 34444444333 23
Q ss_pred EEEEEcCCcEEEE
Q 001319 644 LAVTTADNGFKIL 656 (1101)
Q Consensus 644 l~~~~~d~~i~iw 656 (1101)
+-.++....+.++
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444445555554
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=6.4e-15 Score=146.74 Aligned_cols=242 Identities=11% Similarity=0.206 Sum_probs=188.0
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC--cEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~ 880 (1101)
....+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+. .+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34456777799999999999966678888765544222222334567777865 5777776554 599999998888
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-E--eCC
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V--HET 957 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~--~d~ 957 (1101)
+..+. ...+|.++.++. ++|+++=.+. |+|||+.+-+.+++...... .+..+.++.+++.+.+++. + +.|
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~---n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPP---NPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCC---CccceEeeccCCCCceEEecCCCCCc
Confidence 87765 457799999874 4566665554 99999999776655433211 1256777777778889998 3 378
Q ss_pred eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCceeEeeCCCCcCCCcccCCCCccc
Q 001319 958 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1036 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 1036 (1101)
.|.+||..+.+.+..+..| .+++-+++|++||.+|||+++.|+ |||+.+.+|..+..++. ...++.
T Consensus 154 dV~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR----------G~~~~~ 220 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR----------GTYPVS 220 (391)
T ss_pred eEEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC----------CceeeE
Confidence 9999999999999998865 999999999999999999999887 79999999999999885 233556
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1037 PLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1037 ~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.+++|+| |+.+|++.|..++|.||.+++..
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 77999999 79999999999999999998866
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2e-16 Score=149.65 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=195.8
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccc-cCCccEEEEEEccCCCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~ 420 (1101)
+|.+.|+++.|-.+++ | .+|..-|.|++|++.+..... .+. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r-L-~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-L-MSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh-h-hcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCC-cc
Confidence 6999999999999997 4 689999999999999876543 144 46789999999987 56
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCC-----Cce--EEEEecCCc-eEEEEE-cCCceeEEe-
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN-----KLL--CVVTCGDDK-LIKVWE-LSGRKLFNF- 490 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~-----~~~--~l~s~~~d~-~v~iwd-~~~~~~~~~- 490 (1101)
|.+-+.|+.+.+|++..+..+. -|.-.++++.|++-. +.. .++.-++.. .+++-| -....+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 7788899999999998765332 455566666665531 100 111111000 011222 111111111
Q ss_pred ---ecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCCCCeee----------eccCCCCceEEEEEccCCCEEEEe
Q 001319 491 ---EGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 491 ---~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
.+-.+.+.+..+.... ..-++++|-++|.+.+||+.++.... ....|..+|.++.+.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 1233455555543322 22356788899999999999874443 334566789999998766555565
Q ss_pred ecCCCCCceEEEEeCCC--Cee-EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 557 GTSKDGDSFLVEWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
+. +..+..|++.. +.+ ++.........+..+.+-||++.++++|-|+.|+||+.++..++..+..|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 54 55677777653 322 2222222333577788999999999999999999999999999999988864 899
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
+++|+|+...+|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=5.9e-16 Score=148.21 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=173.8
Q ss_pred CCeEEEEECCCce--E-EEEeeCCCCCeeEEEEecCCCCEEEEEeCC-------CcEEEEEeecc---------eEEEee
Q 001319 824 GGKISLFNMMTFK--V-MTTFMSPPPASTFLAFHPQDNNIIAIGTED-------STIHIYNVRVD---------EVKSKL 884 (1101)
Q Consensus 824 dg~i~vwd~~~~~--~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------g~v~iwd~~~~---------~~~~~~ 884 (1101)
++.|.+.+++... . ...|..|.++|..++-+|.+.++|+++..+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5677777665432 2 345667889999999999888899887753 24679988643 334455
Q ss_pred c-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc-cceEEeecCCCCCCCcceEEEcC--CCCEEEEEeCCeEE
Q 001319 885 K-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR-KSVTIHIPAGKTPTGDTRVQFNA--DQVRMLVVHETQLA 960 (1101)
Q Consensus 885 ~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~d~~i~ 960 (1101)
. .+-+.|.|+.|.|++..|++-. |..|.+|+++.+..+ .........++. ...++-+|+| ||..+++..|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~-~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR-HSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc-ceecccccCCCCccceEEEeCCCcEE
Confidence 4 5667999999999999999876 788999999987763 222222222222 5677888988 89999999999999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQL-VFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1039 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 1039 (1101)
.||+.+.+....+.. .|...|..+.|.|+-++ |++++.||.|+|||.+.-+....-. -+|+| ++.+
T Consensus 197 ~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el---------~~HsH--WvW~ 263 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL---------PGHSH--WVWA 263 (370)
T ss_pred EEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---------CCCce--EEEE
Confidence 999999888776654 45888999999999874 7789999999999998654322211 12666 6679
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1040 VAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1040 l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
+.|.|..+.++++||.|..|.+|...+
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccc
Confidence 999998899999999999999998743
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.2e-15 Score=168.57 Aligned_cols=223 Identities=13% Similarity=0.161 Sum_probs=149.6
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.+....-..+.|+|=...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 44555567788999999999999877889999999998776443323345579999997765544899999999999999
Q ss_pred --cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 482 --~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
.++.....+ |+ +|.+-.+ .+-+...-|.+.=| -....+|+++|.
T Consensus 1140 ~y~~~~~~~eL------VT--aw~~Ls~--~~~~~r~~~~v~dW-----------------------qQ~~G~Ll~tGd- 1185 (1387)
T KOG1517|consen 1140 DYADKWKKPEL------VT--AWSSLSD--QLPGARGTGLVVDW-----------------------QQQSGHLLVTGD- 1185 (1387)
T ss_pred ccccccCCcee------EE--eeccccc--cCccCCCCCeeeeh-----------------------hhhCCeEEecCC-
Confidence 443111111 11 1111111 11111112223223 233334444432
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCe---eeEeeccCCCCCCCCee
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN---ILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~v 635 (1101)
-..|+|||.........+.......++++.-+- .|+.+++|..||.|++||.+... .+.....|....+|..+
T Consensus 1186 ---~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1186 ---VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred ---eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence 567899998888877777766665666655443 46899999999999999987643 35555555554558899
Q ss_pred EEecCCCE-EEEEEcCCcEEEEEcccc
Q 001319 636 RFSKEGNL-LAVTTADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~-l~~~~~d~~i~iwd~~~~ 661 (1101)
.+.+.|-. |++|+.+|.|++||++..
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccC
Confidence 99887654 999999999999998753
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=4.9e-15 Score=142.24 Aligned_cols=285 Identities=14% Similarity=0.269 Sum_probs=202.7
Q ss_pred ecCCCcEEEEEEe--cCCceEEEEEec----cCcEEEEecC--CCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 341 LHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 341 ~~h~~~V~~v~fs--pdg~~llasg~~----d~~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
....-.+.+++|| |+.++.+|.|+. .+.|.|-.++ +++.+.. --..|..+++.+
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~tK~ 102 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPVTKL 102 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCccce
Confidence 3345578999998 566667788864 4566666554 2333221 124588999999
Q ss_pred EEccCCC-----EEEEEECCCeEEEEeecCCcc-cccce-----eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 413 AWSPDGN-----YVGVAFTKHLIQLYSYAGSND-LRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 413 ~~spdg~-----~las~~~d~~i~vwd~~~~~~-~~~~~-----~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
-|.||.+ +||+++ ..+|+|.+...+. +.... .-..+..++++..|+.-..+ ++.+++-|.+..|||
T Consensus 103 ~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWd 179 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWD 179 (364)
T ss_pred EecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEE
Confidence 9999873 566553 3599999974221 11111 12356679999999986665 899999999999999
Q ss_pred -cCCc---eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCC--CCceEEEEEccC-CCEE
Q 001319 482 -LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSAD-GSRL 553 (1101)
Q Consensus 482 -~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~d-~~~l 553 (1101)
.+|. ....+-.|..+|..|+|... ..+.+++.+.||.+|++|++..+.-. .+..+ ..+...++|++. -+++
T Consensus 180 ie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 180 IETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred EeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 6552 35678889999999999863 45789999999999999998765433 22222 346778888874 4567
Q ss_pred EEeecCCCCCceEEEEeCCCC-eeEEEecccCCcceEEEEEeCC-CCEEEEEeCCCcEEEEECCCCee------eEeecc
Q 001319 554 FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNI------LTSTDA 625 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~ 625 (1101)
|+... ....|.+.|++.. .++..+++|.. .|+.++|.|. ..++.++|.|..+.+||+...-. +..+.
T Consensus 259 ATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~- 333 (364)
T KOG0290|consen 259 ATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT- 333 (364)
T ss_pred hhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-
Confidence 76654 3567999999864 57788899887 8999999995 46888899999999999976322 22222
Q ss_pred CCCCCCCCeeEEec-CCCEEEEEEcCCcEEE
Q 001319 626 EGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~i 655 (1101)
....|+.+.|++ .+..++++.. +.+.+
T Consensus 334 --a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 233789999997 5667777664 34443
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.2e-15 Score=167.18 Aligned_cols=304 Identities=16% Similarity=0.224 Sum_probs=211.6
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-CCCCCCeeEEec--CCCEEEEEEcCCcEEEEEcccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSK--EGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
....+.|+|-...++++.+.-.|+|||.+.++.+..+.... ....|..+.+-. |..++.+++.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45568899988999999988899999999999988775432 224577777654 567899999999999997432210
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
.. .+ + | -
T Consensus 1146 -----~~--~e-----------------L-----------------------------------------------V--T 1152 (1387)
T KOG1517|consen 1146 -----KK--PE-----------------L-----------------------------------------------V--T 1152 (1387)
T ss_pred -----CC--ce-----------------e-----------------------------------------------E--E
Confidence 00 00 0 0 0
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEE
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSA 822 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~ 822 (1101)
+|++-...+.+....| .-+.|.. .|.++++|
T Consensus 1153 aw~~Ls~~~~~~r~~~------------------------------------------------~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTG------------------------------------------------LVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred eeccccccCccCCCCC------------------------------------------------eeeehhhhCCeEEecC
Confidence 0000000011111111 1223333 35555555
Q ss_pred cCCeEEEEECCCceEEEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc---eEEEeeccCCCC--eeEEEE
Q 001319 823 TGGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKR--ITGLAF 896 (1101)
Q Consensus 823 ~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~--V~~l~~ 896 (1101)
.-..|+|||...-.....+.. ....|+++.-+-..|..+++|..||.|++||.... ..+...+.|+.. |..+.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 557799999988777776653 34557887766656799999999999999998754 356777889888 999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEecc
Q 001319 897 STSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTP 975 (1101)
Q Consensus 897 s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 975 (1101)
-+.|- .|++|+.||.|++||+..........+...... .+..+++..+++...+|+|+.+.|.||++...+ +..+..
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~ 1342 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKY 1342 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecCcceEEEEecChhh-hccccc
Confidence 88765 599999999999999998543333333222211 135899999999999999888999999987433 333322
Q ss_pred CCC----CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 976 QDA----LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 976 ~~~----h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
..+ ..+.+.|++|.|---+||+|+.|.+|.||......
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 211 15678999999999999999999999999877654
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.6e-15 Score=170.41 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=164.1
Q ss_pred cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccc
Q 001319 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1101)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 442 (1101)
+..|.|||.+..... .+..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765421 256678899999999999999988653 469999999875422
Q ss_pred cceeeecccCcEEEEEEecCCCceEEEE-ecCCceEEEE--EcCCceeEEeecCCcCeEEEecccCCCccEEEE-eccCC
Q 001319 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFS-TAIDG 518 (1101)
Q Consensus 443 ~~~~l~~h~~~V~~l~~s~d~~~~~l~s-~~~d~~v~iw--d~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s-~~~d~ 518 (1101)
+..+.+| ...++|+|||+. |+. .+.+|.+.|| |..+..+..+..+...+....|+| ||+.|+. +..++
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123343 446899999994 544 4567876665 555555677777777788899987 5666554 44678
Q ss_pred eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
..++|+++..........+.. ....|+|||++++..+. + .+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~----~-~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING----D-NVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC----C-CEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 3 4667999988765433332 234577999999
Q ss_pred EEEEEeCCCcEEEEEC--CCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 599 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
+|+.++.++.+.+|++ .+++....+..+.+ .+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999998998888875 35777777764433 5788899884
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=5.8e-15 Score=164.41 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=202.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+|++++. ......+.-..+|+|++|+|....++|.|..+|.|.+||+..+....... .......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCC
Confidence 8888877 66777778889999999999998899999999999999998876532100 111255699
Q ss_pred ccEEEEEEccCCCE--EEEEECCCeEEEEeecCCcccccceeee---------cccCcEEEEEEecCCCceEEEEecCCc
Q 001319 407 ISVSRVAWSPDGNY--VGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 407 ~~v~~~~~spdg~~--las~~~d~~i~vwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
.+|+.+.|-.+-.- +++++.||.|..|+++.-........+. .-...+++++|.+...+ .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 99999999886554 9999999999999887543311111111 12336899999998776 789999999
Q ss_pred eEEEEE---cCCce------eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-CCCeeeeccCCCCceEEEE
Q 001319 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 476 ~v~iwd---~~~~~------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~ 545 (1101)
.|.-=+ .+... +..+..|.++|.++.++|-.. ..+++++ |-++++|.-. .......+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 988733 22222 345667899999999887543 3444555 9999999877 6666777777777899999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
|||-.-.++.+.. ++|.|.+||+... .++.+..-. ......+.|++.|+.+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877776653 6999999998643 344444333 33567788999999999999999999999864
No 202
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.4e-15 Score=147.94 Aligned_cols=274 Identities=12% Similarity=0.162 Sum_probs=190.9
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CCCEEEEEECCCeEEEEeec
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~las~~~d~~i~vwd~~ 436 (1101)
.+|++-..|.|+|||..+++.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 568888999999999999887653 788888999999987 46778899999999999999
Q ss_pred CCcccccceeeeccc-CcEEEEEEecCCCceEEEEec----CCceEEEEE-cCCce-eEEe-ecCCcCeEEEecccCCCc
Q 001319 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1101)
Q Consensus 437 ~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~----~d~~v~iwd-~~~~~-~~~~-~~h~~~v~~v~~~~~~~~ 508 (1101)
+.....++ .+.+|. .+..+++-.-.++ +++.|. .|-.|.+|| ...+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87655443 345565 4667777665566 566664 356799999 44433 5444 5799999999999984 5
Q ss_pred cEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
++|++|+.||-|.++|+...... ....-++..|.++.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2233355578999999887 33544443 7789999999887655544321
Q ss_pred C---------cceEEE-EEeC-CCCEEEEEeC-CCcEEEEECC---CCee---eEeeccCCCCCCCCeeEEecCCCEEEE
Q 001319 585 K---------KSNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NVNI---LTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 585 ~---------~~v~~~-~~~~-~~~~l~~~~~-dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
- ..-+.+ +.+| ++..++.++. -++..++-+. ++.. +..+.+ ++..-|+++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 0 000111 2223 3344555443 5555555443 2322 223332 23446788889888999999
Q ss_pred EEcCCcEEEEEccc
Q 001319 647 TTADNGFKILANAI 660 (1101)
Q Consensus 647 ~~~d~~i~iwd~~~ 660 (1101)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=8.4e-14 Score=138.91 Aligned_cols=241 Identities=10% Similarity=0.108 Sum_probs=185.0
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...+..+.|..|...|..|+.|| -++|+.+.-.... ........|-.+-|+.. .+.+++...-+.+++.+ ..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 7888887644311 11122334555666543 22344443334689999 666
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC---CCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
..+..+. ...+|.+|.++. +.|+++-.+. |.|||+++.+...++... ...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 6676665 455799998854 4676666554 999999999988776554 334667777777779987643 2
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCc-EEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
..|.|.+||..+-+.+..+..|.+ .+.+++|+++|..++++++.|+ |||+.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 377899999999999999999887 8999999999999999999887 79999999999999876555567899999999
Q ss_pred CCEEEEEEcCCcEEEEEcccc
Q 001319 641 GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.+|++.+..++|+++.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998755
No 204
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=1.8e-16 Score=172.51 Aligned_cols=289 Identities=13% Similarity=0.205 Sum_probs=226.4
Q ss_pred eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
.+..+.+|...|.|+.|...|.++++++. +..++||..+++.+.....||.+ .++.++.+.+..++++++.|..|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceE
Confidence 33456678888999999999999999986 88999999999999999999988 89999999888899999999999
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecc
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 689 (1101)
++|.+..+.++..+.++.+ .|++++|+|-. +.+.||++++||..-. .......+..
T Consensus 257 rvWrl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~---~~~y~prp~~--------------- 312 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE---PRIYVPRPLK--------------- 312 (1113)
T ss_pred EEEecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc---ccccCCCCCC---------------
Confidence 9999999999999987755 89999999965 7788999999998611 0111000000
Q ss_pred ccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCC
Q 001319 690 SSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 769 (1101)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~ 769 (1101)
......+.++.|...+..+.+++.++....|.+...
T Consensus 313 --------------------------------------------~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 313 --------------------------------------------FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred --------------------------------------------cccccceeeeeccccccccccccCCcccccchhhHh
Confidence 112345667788888999999999998888865421
Q ss_pred CCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC-CeEEEEc-CCeEEEEECCCceEEEEeeCCCCC
Q 001319 770 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA 847 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 847 (1101)
.| +...+.-+..+.|- .+.+++- +-.+.+|++.+|...+.+.+|...
T Consensus 349 ---------------~~----------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 349 ---------------AW----------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ---------------hh----------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 11 12222222223232 2444444 677999999999999999999999
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~ 922 (1101)
+..+.++|.+..+..+++.||...|||+..|..++...--.+.+..-+||+||..++....-|.+.|.....++.
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 999999998888888999999999999999977765533346677889999999999888889999988765543
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.4e-15 Score=152.91 Aligned_cols=199 Identities=14% Similarity=0.209 Sum_probs=161.5
Q ss_pred eEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 808 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
.+++|+.||..++++. ||++|+|+..+...+.....|..+|.++.|+| |+++|++.+.| ..+||++.++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888889999999999999 99999999999 899999999977665542
Q ss_pred --CCCCeeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCe
Q 001319 887 --HQKRITGLAFSTSL-----NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQ 958 (1101)
Q Consensus 887 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~ 958 (1101)
-......+.|+.|+ ..++....-+.|+.|++..+..-......... .....++++++|+||++++.|. ||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEeccCCc
Confidence 23346778888887 34444555677888888765542111111111 1116899999999999999976 999
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
|-|++..+.+.+...+. .|..-|+.+.|+||.+++++-+.|..++|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999988877664 4588999999999999999999999999988765
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=1.5e-13 Score=149.90 Aligned_cols=332 Identities=13% Similarity=0.141 Sum_probs=207.5
Q ss_pred ceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEE
Q 001319 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1101)
++++++-..++.|.+.| .+.+.+.++.........+.+++ ||+++++++.||.|.++|+.+.+...++.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34567778899999999 88899999986554444566655 77899999999999999999999887776544 5788
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC------CcceEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1101)
+++|+||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..+|....++..- +.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998765 47899999999999998876432 22455677778877565554 558888888776
Q ss_pred CeeeE--eeccCCCCCCCCeeEEecCCCEEEEE-EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 617 VNILT--STDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 617 ~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
.+.+. .+... .......|+|++++++++ ...+.|.++|..++.. ...+.. |+
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~------------------g~--- 214 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDT------------------GK--- 214 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-------------------SS---
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceE-EEEeec------------------cc---
Confidence 54433 23221 145789999999988775 4467888888765521 111000 00
Q ss_pred ccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC
Q 001319 694 SSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 773 (1101)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~ 773 (1101)
..|......+ .+|..
T Consensus 215 ----------------------------------------~p~~~~~~~~-php~~------------------------ 229 (369)
T PF02239_consen 215 ----------------------------------------KPHPGPGANF-PHPGF------------------------ 229 (369)
T ss_dssp ----------------------------------------SBEETTEEEE-EETTT------------------------
T ss_pred ----------------------------------------cccccccccc-cCCCc------------------------
Confidence 0011111111 11111
Q ss_pred CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEE-EEcCCeEEEEECCCceEEEEeeCCCCCeeEEE
Q 001319 774 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMSPPPASTFLA 852 (1101)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 852 (1101)
++++. .+..+...+ ..+.+.+.+||..+++.+.++.....+ ..+.
T Consensus 230 -------------------------------g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 230 -------------------------------GPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp -------------------------------EEEEE--EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred -------------------------------ceEEe--eccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 11111 112233322 223455668999999999999987666 7888
Q ss_pred EecCCCCEEEEE----eCCCcEEEEEeecceEEEeeccCC-CCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCccccc
Q 001319 853 FHPQDNNIIAIG----TEDSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKS 925 (1101)
Q Consensus 853 ~s~~~~~~la~g----~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~s~s~D--g~v~lwd~~~~~~~~~ 925 (1101)
.+| +++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+++..+..+ +.|.+||..+.+.+..
T Consensus 276 thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 276 THP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp --T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred cCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 899 89999887 455899999999998887775332 358999999999976655544 3699999999887665
Q ss_pred eE
Q 001319 926 VT 927 (1101)
Q Consensus 926 ~~ 927 (1101)
..
T Consensus 355 i~ 356 (369)
T PF02239_consen 355 IP 356 (369)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 207
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1e-16 Score=175.02 Aligned_cols=216 Identities=15% Similarity=0.223 Sum_probs=162.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc-eEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVW 480 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~-~v~iw 480 (1101)
+..|+...+|++||-+.+.|++|+..|.|++|++.+|.... ...+|..+|+-+.=+.||.. .|.+++... ...+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67788999999999999999999999999999999998776 57899999999999999995 333333333 67899
Q ss_pred E--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC----CCceEEEEEccCCCEEE
Q 001319 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 481 d--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l~ 554 (1101)
+ ..+...++|.+ -.++.|+... +.-+.|.......+||+.+.....++-.. ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9 56666666654 3456665432 23344555567889999998776653222 11346788999999887
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
- +|. +||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.++..+.-.. ..
T Consensus 1247 n-------dGv--LWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 N-------DGV--LWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred e-------Cce--eeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 6 444 599999888888776542 222469999999999887 999999998888765443 67
Q ss_pred eEEecCCCEEEEE
Q 001319 635 LRFSKEGNLLAVT 647 (1101)
Q Consensus 635 v~~s~~g~~l~~~ 647 (1101)
+.|+..|..++..
T Consensus 1307 VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAM 1319 (1516)
T ss_pred EEeccCccchhhh
Confidence 8898888776543
No 208
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=1.1e-12 Score=148.50 Aligned_cols=174 Identities=19% Similarity=0.262 Sum_probs=136.9
Q ss_pred ccccCCCCcceeEeecCCCc-----EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGST-----VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~-----V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 401 (1101)
+|..+.....+...+.+.+. ..-+-++++.-| +++|+.-+.|.+|+.. ..... ..
T Consensus 111 ~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~-i~~gsv~~~iivW~~~-~dn~p------------------~~ 170 (967)
T KOG0974|consen 111 LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELY-IASGSVFGEIIVWKPH-EDNKP------------------IR 170 (967)
T ss_pred EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEE-EEeccccccEEEEecc-ccCCc------------------ce
Confidence 33444444444444444432 233445666554 5899999999999987 22211 13
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.||++.|.++.||-||+++|+.|.|.++++|++++++.... ..-+|+.+|+.+.|.|. .++|++.|.+.++|+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG 244 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe
Confidence 889999999999999999999999999999999999887662 45699999999999988 499999999999999
Q ss_pred cCCceeEEeecCCc-CeEEEecccCCCccEEEEeccCCeEEEEecCCC
Q 001319 482 LSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~-~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 528 (1101)
.++..+..+.+|.+ .|..++..+ +...+++++.|+.+++|++...
T Consensus 245 ~~~~~l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 245 VNGTQLEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cccceehhhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhcc
Confidence 88888889988876 488888765 4478899999999999997653
No 209
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.66 E-value=1.2e-11 Score=126.95 Aligned_cols=416 Identities=13% Similarity=0.123 Sum_probs=238.0
Q ss_pred EecC--CceEEEEEeccCcEEEEe--cCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE---
Q 001319 352 FHPS--HQTLLLVGSSNGEITLWE--LAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA--- 424 (1101)
Q Consensus 352 fspd--g~~llasg~~d~~i~iwd--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~--- 424 (1101)
..|| |..++.+++.| +|. +.+|+..+ +..|-+-|+...|+|||+.+|..
T Consensus 44 l~PDI~GD~IiFt~~Dd----lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~ 99 (668)
T COG4946 44 LNPDIYGDRIIFTCCDD----LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVM 99 (668)
T ss_pred cCCcccCcEEEEEechH----HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEE
Confidence 4455 56677776554 555 44554433 66688899999999999999872
Q ss_pred --E--CCCeEEEEeecCCcccccceeeecccCcEEE-EEEecCCCceEEEEecCCceEE----EEE--cCCceeEEeecC
Q 001319 425 --F--TKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-LAFAYPNKLLCVVTCGDDKLIK----VWE--LSGRKLFNFEGH 493 (1101)
Q Consensus 425 --~--~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~-l~~s~d~~~~~l~s~~~d~~v~----iwd--~~~~~~~~~~~h 493 (1101)
+ ..+.+.+.+.++|+..+. ++-| ...+. .-|.|||. ++++...-.-.- ++. .+|-....+ .
T Consensus 100 ~~ss~~taDly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--n 171 (668)
T COG4946 100 LGSSLQTADLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--N 171 (668)
T ss_pred ecCCCccccEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--c
Confidence 2 234588888899876542 2223 33444 45999999 677654332222 222 223222222 2
Q ss_pred CcCeEEEecccCCCccEEEEeccCCe------------EEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGK------------IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~------------i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
-++.+.+.+- || .++.|-.--. =++|--..++ ....+..-...|++-.+-.+.-++++ +.
T Consensus 172 lGpathiv~~---dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~ 244 (668)
T COG4946 172 LGPATHIVIK---DG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DH 244 (668)
T ss_pred CCceeeEEEe---CC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cc
Confidence 3344444431 33 3333321111 1234322222 11112222223444333333334444 33
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEee---ccC--CCC----CC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST---DAE--GGL----PN 631 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~--~~~----~~ 631 (1101)
++-|.|+--|+....+ +.-...+ ...+-..+.||+.++.. ..|.|++||..+..+...- +.. ... .+
T Consensus 245 eG~GnlYSvdldGkDl-rrHTnFt--dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~p 320 (668)
T COG4946 245 EGVGNLYSVDLDGKDL-RRHTNFT--DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNP 320 (668)
T ss_pred cCccceEEeccCCchh-hhcCCch--hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCH
Confidence 4566666666554322 2211111 12333456788877653 4578999998775443211 110 000 01
Q ss_pred CCeeE-Eec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 632 LPRLR-FSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 632 v~~v~-~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
..-+. |++ +|.+++..+. |...+.+...+. .+
T Consensus 321 skyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~-~i-------------------------------------------- 354 (668)
T COG4946 321 SKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY-SI-------------------------------------------- 354 (668)
T ss_pred HHhhhhhccCCCcEEEEEec-CcEEEECCCCCe-eE--------------------------------------------
Confidence 11111 333 5777777765 455454433220 00
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCC-eEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
+ .++...|.-..+..+++.++.+..|| .+-+++...
T Consensus 355 -------------------q----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-------------------- 391 (668)
T COG4946 355 -------------------Q----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-------------------- 391 (668)
T ss_pred -------------------E----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--------------------
Confidence 0 12344455556666666788888887 777776543
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 867 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 867 (1101)
++..... ..-+.|.++..++||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+
T Consensus 392 --~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~ 464 (668)
T COG4946 392 --GEVKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPE 464 (668)
T ss_pred --ceEEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCc
Confidence 2211111 2557799999999999999888 57899999999998777676777899999999 99999998877
Q ss_pred C----cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEe
Q 001319 868 S----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 907 (1101)
Q Consensus 868 g----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s 907 (1101)
| .|++||+.+++....-. ..+-=.+-+|.||+++|..-+
T Consensus 465 gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 6 68999999888654432 233345678999999887654
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.3e-13 Score=150.38 Aligned_cols=320 Identities=12% Similarity=0.079 Sum_probs=200.1
Q ss_pred EEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEE
Q 001319 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1101)
Q Consensus 511 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 590 (1101)
+++-..++.|.+.|..+.+....+.........+.|+|||+++++++. ++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccce
Confidence 356667899999999998888888766555566889999999999875 7899999999999999987644 4667
Q ss_pred EEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCC-----CCCCCeeEEecCCCEEEEEEc-CCcEEEEEcccccc
Q 001319 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1101)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~ 663 (1101)
+++++||++++++. .++.+.++|.++.+.+..+...+. ...+..+..+|....+++.-. .+.|.+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999875 789999999999999888764321 224556666777665554444 35555555432200
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
.
T Consensus 163 ~------------------------------------------------------------------------------- 163 (369)
T PF02239_consen 163 L------------------------------------------------------------------------------- 163 (369)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 823 (1101)
.. +.. ..........|+|++++++++.
T Consensus 164 ---------~~-------~~i-------------------------------------~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 164 ---------KV-------TTI-------------------------------------KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp ---------EE-------EEE-------------------------------------E--TTEEEEEE-TTSSEEEEEE
T ss_pred ---------ce-------eee-------------------------------------cccccccccccCcccceeeecc
Confidence 00 000 0122344567888888876654
Q ss_pred --CCeEEEEECCCceEEEEeeC----CCCCeeEEEEecC---------CCCEEEEEeCCCcEEEEEeecceEEEeeccCC
Q 001319 824 --GGKISLFNMMTFKVMTTFMS----PPPASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 824 --dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 888 (1101)
.++|.++|.++++.+..+.. |..+...+ .+|. .+...++.-....+.+|+..+.+.++++....
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred cccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 57888899888877766542 22222222 1221 22232222233456678888899999998776
Q ss_pred CCeeEEEEcCCCCEEEEE----eCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE--e-CCeEEE
Q 001319 889 KRITGLAFSTSLNILVSS----GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--H-ETQLAI 961 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~----s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~-d~~i~v 961 (1101)
++ .-+..+|+++++.+. ...++|.++|..+.+...... ...+ ..+.++.|++||+.+.++ . ++.|.+
T Consensus 270 ~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~--~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 270 GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT--PGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH--HHHT-----EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe--ccCC---CcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 66 788899999999988 445899999999964332211 1111 248899999999988774 2 448999
Q ss_pred EEcCCceeeeEecc
Q 001319 962 YDASKMERIRQWTP 975 (1101)
Q Consensus 962 ~d~~~~~~~~~~~~ 975 (1101)
||..+.+.+..+..
T Consensus 344 ~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 344 YDAKTLKEKKRIPV 357 (369)
T ss_dssp EETTTTEEEEEEE-
T ss_pred EECCCcEEEEEEEe
Confidence 99999999888763
No 211
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=4.7e-14 Score=157.28 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=181.5
Q ss_pred CCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCCccc--ccce-eeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL--RQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 405 h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~~~~-~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
....|.|++|+| +..+||.|+.+|.|.+||+..+... .... ....|..+|+.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467999999999 6778888889999999999987652 2111 23478999999999876543358999999999999
Q ss_pred EcCC--cee-----EEee------cCCcCeEEEecccCCCccEEEEeccCCeEEEEe---cCCCC-----eeeeccCCCC
Q 001319 481 ELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGH 539 (1101)
Q Consensus 481 d~~~--~~~-----~~~~------~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd---~~~~~-----~~~~~~~~~~ 539 (1101)
+... .++ .... .-...++++.|.+.. -..++.|+.+|.|.-=. ..... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 9222 111 1111 122357888887764 46788999999987622 22222 1224566778
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEEEEeCCCCE-EEEEeCCCcEEEEECCCC
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~ 617 (1101)
.|+++.++|-+..++..+. |-+++||... ...++..+..+.. .+..++|+|...- ++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998877666553 8899999988 6666666666655 5889999998755 455668999999998754
Q ss_pred ee--eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 618 NI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 618 ~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.. +...... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 43 3333322 345678889999999999999999999998644
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=4.3e-14 Score=161.13 Aligned_cols=255 Identities=11% Similarity=0.051 Sum_probs=180.7
Q ss_pred cccCCccEEEEEEccCC-CEEEEEECCCeEEEEeecCCc----ccccceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg-~~las~~~d~~i~vwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
+..|...|..++.++.. .++++|+.||+|++||...-. ..+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66788888899888755 999999999999999986421 1222223444567899999999999 6888899999
Q ss_pred EEEEEcCC---ce-----eEEeec-CCcCeEEE-ecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEE
Q 001319 477 IKVWELSG---RK-----LFNFEG-HEAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTM 544 (1101)
Q Consensus 477 v~iwd~~~---~~-----~~~~~~-h~~~v~~v-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~ 544 (1101)
|++.+.+- +. .+.... ..+.+.++ ++........++.+..-+.|..||++.....+.+. ...+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99998322 11 111111 22334443 34333222378888889999999998877665443 345579999
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC---CEEEEEe--CCCcEEEEECCCCee
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVG--EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 619 (1101)
+.+|.+.+++.|.. .|.+.+||++-+.++..+.-.....+..++.+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999986 88999999999998888776655677777777643 3555544 578899999999876
Q ss_pred eEeeccCCCC-----------------CCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 620 LTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 620 ~~~~~~~~~~-----------------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
..++...... .......+...+.++.+|+.|..|+.||.....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 6655433110 011222333345688899999999999987663
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.7e-13 Score=142.40 Aligned_cols=574 Identities=12% Similarity=0.145 Sum_probs=339.3
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+......|++|+....| +|+|+.||.+++-.+.+...-.. .-.+...+...-..++.||.+.|.-+.|+.+.+.|
T Consensus 12 PnnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 34567899999998875 69999999999999876543211 00111122222234699999999999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeE--EeecCCcCeEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--NFEGHEAPVYS 499 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~h~~~v~~ 499 (1101)
-+...+|.|.||-+-.|.-.... .-......|.+++|..||. .++....||.|.|=..+|..+. .+++. ....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence 99999999999999887644321 1234566799999999999 6777788888876666665542 22221 2346
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCee-------e----eccCCCCceEEEEEc--------cCCCEEEEeecCC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-------V----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSK 560 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-------~----~~~~~~~~v~~~~~s--------~d~~~l~~~~~~~ 560 (1101)
+.|++ |...++.+-..|.+.++|....-.. . .+...+..+..+.|. ||...++++..
T Consensus 162 v~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 162 VLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 67766 5567777888899999986532110 1 011112234444442 47778888775
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCeeeEeeccCCCCCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
+|.+++-.-.+......+... -.+....|+++|..|+++|.+ +.|.+|. .-|+.+.+++.++. .
T Consensus 238 --nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--C 310 (1189)
T ss_pred --CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--e
Confidence 666666543332222222221 145568899999999998853 2455554 35777888887765 7
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
|++++|-..|-.++.+- |+.|.+=+++.... .-.++. .+.+--.+. ....
T Consensus 311 It~lsWEg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~-----------TvVy~y~~~-----------------e~p~ 360 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEE-----------TVVYVYQKE-----------------ELPQ 360 (1189)
T ss_pred eeeeEEcCCceEEEEEe-cceEEEEeecccce-EEEeee-----------EEEEEEccC-----------------CCcc
Confidence 99999988887777654 56777766543311 000000 011100000 0111
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCc
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 791 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1101)
+.+..|+......... .-....+++++.+--.++.-..+|.+.-++.-.. + +. .....+.+ .-|
T Consensus 361 y~i~Fwdtk~nek~vK--------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~-~---~~---~~~l~LCN-SIG 424 (1189)
T KOG2041|consen 361 YGIMFWDTKTNEKTVK--------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN-R---SR---VYFLQLCN-SIG 424 (1189)
T ss_pred eEEEEEecccChhhhh--------hhcceeehheecccEEEEeccccCCCcchhhhhc-c---cc---eEEEeeec-ccC
Confidence 2222344333222111 1122345556655555555555665554321000 0 00 00000000 001
Q ss_pred cceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC---CCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 792 LLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 792 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
..+.. .-..|.-.-..-++..++.++...+.+|.....+....+.+ +...- |+- ...-+|+.|+
T Consensus 425 T~lD~------kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr----~h~---Ddtp~ga~d~ 491 (1189)
T KOG2041|consen 425 TSLDY------KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGR----FHG---DDTPEGAQDR 491 (1189)
T ss_pred CcCCC------CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhccccc----ccC---CCCccchhhc
Confidence 11110 11112222223367888899988999998765444333322 22111 332 1223455666
Q ss_pred cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC
Q 001319 869 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 869 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
++.- . ..++.|..++|-+++.+ .++|..+-..|.|.-+.+..........+. ..+..++..-..
T Consensus 492 ~l~y---s----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n-------~~~y~~~lNCns 555 (1189)
T KOG2041|consen 492 TLEY---S----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVN-------PSIYSIKLNCNS 555 (1189)
T ss_pred eeec---c----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccC-------chheeEeeccCc
Confidence 5432 1 34567888999999887 578999999999999999886544433332 567788888888
Q ss_pred CEEEEEe-CCeEEEEEcC---CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 949 VRMLVVH-ETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 949 ~~l~~~~-d~~i~v~d~~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
..+++-+ -|.+.+.|+. ++..+..+.... ...|+.+.|..|+..|++--+...++|++-...+
T Consensus 556 tRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 556 TRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred chhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 8888754 6778888776 444444333322 6779999999888877766666677887755443
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.63 E-value=3e-14 Score=136.87 Aligned_cols=244 Identities=13% Similarity=0.211 Sum_probs=175.9
Q ss_pred ecCCCcEEEEEEecCCc----eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 341 LHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~----~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
+.|.-+++.+.|.|+.. .|||+. +-.+|+|.+...+...... ..+....-..+..++++..|..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999862 367764 3489999997532111000 0011112344678999999998
Q ss_pred -CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEee
Q 001319 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFE 491 (1101)
Q Consensus 417 -dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~ 491 (1101)
|-++|.+++-|-+..|||+++|..-.....|-.|...|..++|...+.. +++|.|.||+||+|| ..-. .+++-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7889999999999999999998442233367899999999999998777 899999999999999 3322 222222
Q ss_pred cCCcCeEEEecccCCCccEEEEeccC-CeEEEEecCCCC-eeeeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEE
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~i 568 (1101)
....+...++|+.. |-+++++-..| ..|.+-|++... ....+..|...|+.++|.|.. ..+++++. |..+.+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 23567888999865 45788877666 468899998765 456889999999999999964 57778775 889999
Q ss_pred EeCCCCe------eEEEecccCCcceEEEEEeCC-CCEEEEEe
Q 001319 569 WNESEGT------IKRTYAGFRKKSNGVVQFDTT-QNHFLAVG 604 (1101)
Q Consensus 569 wd~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 604 (1101)
||+...- ++..+. .+..|+.+.|++. +.+++++.
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe
Confidence 9987532 222222 2236888999964 45666554
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=3.3e-14 Score=138.83 Aligned_cols=236 Identities=16% Similarity=0.177 Sum_probs=177.8
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
.++|+|.||++|+. .+|++.....|.||.....+.- ...+++..|...|++|+|+|....|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46899999999998 5688888889999998766521 134568899999999999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeE-----EeecCCcCeE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-----NFEGHEAPVY 498 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~h~~~v~ 498 (1101)
|+.|..-+||....+...++...+..|...++++.|+|.+. .+++|+.-+.|.||-.+++.-. .-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999955555555557788999999999999999 7999999999999984443321 2245677899
Q ss_pred EEecccCCCccEEEEeccCCeEEEEec-----CC-------------CCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLY-----DT-------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
++.|++ ++-+|++|+.|+..|++.. +. +....++...++++..+.|+|+|..|+-.+.
T Consensus 151 sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 999998 5578999999999999853 21 1122234456778999999999999999886
Q ss_pred CCCceEEEEeCCCCe-eEEEecccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 561 DGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
|..+.+-|..... .+........ +...+.|-.+ +.++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8888888876654 2333222222 4444444433 345555544
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=6.1e-13 Score=130.18 Aligned_cols=238 Identities=12% Similarity=0.171 Sum_probs=171.2
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccC--cEEEEEEecCCCceEEEEecC-----CceEEEE
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGD-----DKLIKVW 480 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~--~V~~l~~s~d~~~~~l~s~~~-----d~~v~iw 480 (1101)
...+++|..|...+++|..+| .+||+.+--+... .-.-+.+ .+..+-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 455699999999999998888 9999987533211 1111222 2222222 233223333332 2479999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-CCCeeeeccCCC--CceEEEEEccCCCEEEEe
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPG--HWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~ 556 (1101)
| ...+++.++. ...+|.+|.+.. + .|++. .++.|.+|.+. +.+....+.... ....+++-..+..+|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r--~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRR--D--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcC--C--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 9 8899998887 567899999865 2 44443 47899999987 444444443322 234444444444455554
Q ss_pred ecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCCCEEEEEeCCCc-EEEEECCCCeeeEeeccCCCCCCCC
Q 001319 557 GTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
+. ..|.|++-|+...+. ...+..|.. .|.+++.+-+|..+++++..|+ |+|||..+|+++..+........|.
T Consensus 155 g~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 GF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred CC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 43 578999999876655 467777777 8999999999999999998887 8999999999999987666667899
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++|||++.+|+++++.|+++|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3e-14 Score=161.72 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=148.0
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEecc---CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
.....|...|.+.+|||||+++ |..+.+ ..|.+||+.+++.... ..+.+| ..+++|
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l-----------------~~~~g~---~~~~~w 255 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVV-----------------ASFRGH---NGAPAF 255 (429)
T ss_pred eEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEE-----------------ecCCCc---cCceeE
Confidence 3345578899999999999976 444432 3799999988754220 013333 346899
Q ss_pred ccCCCEEEEEE-CCCeEEEE--eecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEE
Q 001319 415 SPDGNYVGVAF-TKHLIQLY--SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1101)
Q Consensus 415 spdg~~las~~-~d~~i~vw--d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~ 489 (1101)
||||++|+.++ .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||+ ..+.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEE
Confidence 99999999875 57766555 5555543 2 45667778899999999995 344555678888888 44444433
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
+ .+.+ ....|+| ||+.|+.++.++ +.+||+.++........ ....++.|+|||++++.++. ++...+|
T Consensus 331 l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l 398 (429)
T PRK01742 331 V-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVL 398 (429)
T ss_pred e-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEE
Confidence 3 3443 3456766 667888877765 55599887765433222 23456789999999999875 4445555
Q ss_pred eC--CCCeeEEEecccCCcceEEEEEeCC
Q 001319 570 NE--SEGTIKRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 570 d~--~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1101)
.+ .+|+.++.+.++.+ .+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 53 35777888876665 5677888874
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=8e-14 Score=136.21 Aligned_cols=230 Identities=18% Similarity=0.206 Sum_probs=178.2
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
-..+|+|.||++|+..+|++.....|.||.....+......++..|...|+.++|+|... .|++|+.|+.-+||. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999999887777889999999999999999998 699999999999999 35
Q ss_pred Cc---eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----eccCCCCceEEEEEccCCCEEEEe
Q 001319 484 GR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 484 ~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+. +...+..+....++|.|+|.+ +.+++|+..+.|.+|-++....-. ........|.++.|.|++-+++.|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 445667789999999999855 689999999999999887655432 223345578999999999999999
Q ss_pred ecCCCCCceEEEEeC-----CC-------------CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 557 GTSKDGDSFLVEWNE-----SE-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
+. |+..+++.. ++ |++...+. ...+.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 777777742 11 22333333 233468889999999999999999999999987654
Q ss_pred -eeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
.+....... -+..++.|-.+...++
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVVA 265 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCceee
Confidence 233222221 2556666665544333
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=7.3e-14 Score=159.32 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=137.0
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC-------eeeeccCCCCceEEEEEccCCCE
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~d~~~ 552 (1101)
|+..|..+..+..|...|..++.++. ++.++++||.||+|++|+..... ...++...+..+.++.+.+.+..
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 88999999999999999999988753 55899999999999999976432 23455556778999999999999
Q ss_pred EEEeecCCCCCceEEEEeCCCC-------eeEEEecccCCcc-eEEEEEeCC-CC-EEEEEeCCCcEEEEECCCCeeeEe
Q 001319 553 LFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKS-NGVVQFDTT-QN-HFLAVGEDSQIKFWDMDNVNILTS 622 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~-v~~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1101)
+|+++. ||.|++.+++-- ...+....+..+. +..-++... +. .++.+...+.|..||.+.......
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999974 999999887651 1222222222222 333334332 23 677788999999999999888877
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++.....+.|++++.+|.+.+++.|+..|.+.+||++=+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 776666668999999999999999999999999998755
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.5e-13 Score=131.80 Aligned_cols=283 Identities=14% Similarity=0.190 Sum_probs=185.5
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGV 423 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~las 423 (1101)
..+..++|++.-- -+|++..|-.|+|||-.. ++... .-......|+|++|-|. ++-||+
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceeee
Confidence 3688899999654 357888999999999665 22210 11223568999999995 567788
Q ss_pred EECCCeEEEEeecCCccc-----------ccceeeecccCcEEEEEEecCCCceEEEEec-CCceEEEEE-cCCceeEEe
Q 001319 424 AFTKHLIQLYSYAGSNDL-----------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~-----------~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iwd-~~~~~~~~~ 490 (1101)
|+..| |.+|.....-.. .+.....|| .+|++++|.+||. .+++++ .|..|.||| .+|.++.-.
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 87776 999987532111 111123455 6899999999999 677766 466899999 777665444
Q ss_pred ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEe
Q 001319 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 570 (1101)
...-+.+.-+.|+| ||.+|+.++-|+..++|+....-.........+.|...+|+|+|++|+.... +...+ |.
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~l--ys 307 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRL--YS 307 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceE--EE
Confidence 34556788999988 6689999999999999965443332223333448999999999998886653 23233 32
Q ss_pred CC----CCe-----------eEEEec------c--cCCcceEEEEEeCCCCEEEEEeCC--------CcEEEEECCCCee
Q 001319 571 ES----EGT-----------IKRTYA------G--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNI 619 (1101)
Q Consensus 571 ~~----~~~-----------~~~~~~------~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~ 619 (1101)
+. .+. ++..+. + .-.+...+++|.|.|.++++.-.. +.|.+||.+..-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 21 100 111111 1 012357789999999999986533 3467788765444
Q ss_pred eEeec--cCCCCCCCCeeEEec---CCCEEEEEEcCCcEEEEEcc
Q 001319 620 LTSTD--AEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 620 ~~~~~--~~~~~~~v~~v~~s~---~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.... ..++. .-..+.|+| +|.+|.++-..|.+.-|++.
T Consensus 388 vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 388 VELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 43331 11111 235677776 67888888888888887764
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=147.64 Aligned_cols=293 Identities=13% Similarity=0.108 Sum_probs=219.8
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.|.+|.+.|..|.|...|..|++|+.|..|.+||+..++....+ ..||...|....|-|.....-+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 37889999999999999999999999999999999998765533 3489999999999886544479999999999998
Q ss_pred E--cCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc---CCCC---ceEEEEEccCC
Q 001319 481 E--LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGH---WCTTMLYSADG 550 (1101)
Q Consensus 481 d--~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~s~d~ 550 (1101)
. .++.+. ..+..|.++|.-++.-|.. -..+.+++.|+.+.-.|++.......+. .+.. ....++..|-.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8 555543 5566799999999987764 3678899999999999988765433221 1112 45788888866
Q ss_pred C-EEEEeecCCCCCceEEEEeCCCCe------eEEEecc-----cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--
Q 001319 551 S-RLFSCGTSKDGDSFLVEWNESEGT------IKRTYAG-----FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-- 616 (1101)
Q Consensus 551 ~-~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 616 (1101)
. .+++++. +..+++||.+.-. .+..+.. ...-.|++++|+.++.-+++...|-.|+++...-
T Consensus 294 t~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 6667765 8889999976422 1222222 2223588999999988899988999999995432
Q ss_pred C----------eeeEe-eccCCCCCCCCeeEE-ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 617 V----------NILTS-TDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 617 ~----------~~~~~-~~~~~~~~~v~~v~~-s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
| ..+.. +++|.....|..+-| -|...++++|++=|.|.||+-.++ +.++.+++
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~Meg-------------- 434 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEG-------------- 434 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhc--------------
Confidence 2 12222 566666666777765 678899999999999999998877 45544433
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
...-|.++.-+|--..|++.+-|..|+||
T Consensus 435 ---------------------------------------------------Dr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 435 ---------------------------------------------------DRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred ---------------------------------------------------ccceEeccCCCCCCchhhccCCccceeee
Confidence 11256777777877889999999999999
Q ss_pred Ee
Q 001319 765 KW 766 (1101)
Q Consensus 765 ~~ 766 (1101)
.-
T Consensus 464 TP 465 (559)
T KOG1334|consen 464 TP 465 (559)
T ss_pred cC
Confidence 64
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.7e-13 Score=150.10 Aligned_cols=237 Identities=11% Similarity=0.117 Sum_probs=156.4
Q ss_pred cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCcccccc
Q 001319 368 EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQH 444 (1101)
Q Consensus 368 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~ 444 (1101)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888887654321 4446678999999999999997642 4579999998876432
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCc--eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEE
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIK 521 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~ 521 (1101)
+....+.+...+|+|||+. ++++.+.++ .|.+||..+..+..+..+...+....|+| ||+.|+..+. ++...
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCce
Confidence 2223334557899999995 333444444 58889944444455555555677888877 5677766554 44555
Q ss_pred EE--ecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCE
Q 001319 522 AW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1101)
Q Consensus 522 ~w--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1101)
+| |+.++... .+...........|+|||++++..+.. ++...|.+||+.+++........ ......|+|||++
T Consensus 313 Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEEeCCCC---CCCCceECCCCCE
Confidence 55 55554332 333344456678999999999887642 23567999999888754333221 2334779999999
Q ss_pred EEEEeCCCc---EEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 600 FLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 600 l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
|+.++.++. ++++++. |.....+..+. ..+...+|+|
T Consensus 388 i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred EEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 999887654 6777874 44445554433 3577888887
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.58 E-value=2.6e-09 Score=129.65 Aligned_cols=446 Identities=13% Similarity=0.121 Sum_probs=256.5
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEE----eecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
...+.|.++.|-+|...++.+..+|.|.+. +..+... . ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-E---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-E---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 346789999999999999999999999999 5544321 1 2334566899999999999 6666666888887
Q ss_pred EEcCCceeEEeecCCc-----CeEEEecccCCCccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccCC
Q 001319 480 WELSGRKLFNFEGHEA-----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADG 550 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d~ 550 (1101)
-+.+-.++....-+.. .-..+-|-... .-+-|+..+...- .....+. ...+. ....-..++|-.||
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe---TQF~Gs~gK~aa~-~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKE---TQFHGSAGKAAAR-QLRDPTVPKVDEGKLS-WDDGRVRISWRGDG 221 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCccc---CccCcchhhhhhh-hccCCCCCccccCccc-cCCCceEEEECCCC
Confidence 7766655554433221 12223332111 0111111110000 0000000 01111 23345689999999
Q ss_pred CEEEEeecCCC-C-CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC---CCcEEEEECCCCeeeEeecc
Q 001319 551 SRLFSCGTSKD-G-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 551 ~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.++|+.+.+.. + ...+++|+-+ |.+..+-..-.+ --..++|-|.|+.+++... ...|.+|..+ |-.-..+..
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l 298 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTL 298 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEec
Confidence 99998875322 2 5789999976 666555543332 4556899999999988653 4567777754 333333332
Q ss_pred C--CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcce
Q 001319 626 E--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (1101)
Q Consensus 626 ~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 703 (1101)
. .....|..+.|++|+..||+...|. |.+|-..+---.++..
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe----------------------------------- 342 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE----------------------------------- 342 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE-----------------------------------
Confidence 2 2344789999999999999987655 9999876542111110
Q ss_pred eccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc-ccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 704 ERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
+.++ ....+..+.|+|.. ..+...+.+|.+..+++.-
T Consensus 343 ------------------------i~~~----~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-------------- 380 (928)
T PF04762_consen 343 ------------------------IRFS----SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-------------- 380 (928)
T ss_pred ------------------------EEcc----CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE--------------
Confidence 0000 11122236676644 3355555557776665421
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEEcCCeEEEEECCCceE-----EEEeeCCCCCeeEEEEecC
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKV-----MTTFMSPPPASTFLAFHPQ 856 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~ 856 (1101)
+...+ -..+| |...+++.++.++.+-.+..... ...+. -...|.+++|++
T Consensus 381 ----~v~~s------------------~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~- 436 (928)
T PF04762_consen 381 ----DVSRS------------------PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP- 436 (928)
T ss_pred ----EEEec------------------CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-
Confidence 11000 00112 22234444455677766654321 12232 246799999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecceEE--------Eeec----------cCCCCeeEEEEcCCCCEEEEEeCC---CcEEEE
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDEVK--------SKLK----------GHQKRITGLAFSTSLNILVSSGAD---AQLCVW 915 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~~~--------~~~~----------~h~~~V~~l~~s~d~~~l~s~s~D---g~v~lw 915 (1101)
++..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++
T Consensus 437 ~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 516 (928)
T PF04762_consen 437 SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLV 516 (928)
T ss_pred CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEE
Confidence 6766889999999999996543211 1111 123457888998887776666654 678888
Q ss_pred ECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCce
Q 001319 916 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME 968 (1101)
Q Consensus 916 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~ 968 (1101)
++...+......... .. ...+..+...++...++. ..+|.+..++.....
T Consensus 517 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 517 DIDDSENSASVESST-EV--DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EeccCCCceeEEEEe-cc--CceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 885433211111111 11 134445555555553333 568888866665443
No 224
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=148.42 Aligned_cols=241 Identities=14% Similarity=0.152 Sum_probs=166.5
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--C
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d 417 (1101)
+.||.+.|.|++|+.||. ||++|+.|-.+.|||.-..+.++ .+-.||.+.|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccCC
Confidence 357999999999999998 78999999999999998666554 35789999999999999 6
Q ss_pred CCEEEEEECCCeEEEEeecCCc-------ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC-CceeE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLF 488 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~-~~~~~ 488 (1101)
.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.+ .+.++++||+|+-+| .. -.+-.
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998521 12233356789999999999999966 899999999999999 33 12211
Q ss_pred E---------eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-----CCCCceEEEE-EccCCCEE
Q 001319 489 N---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTML-YSADGSRL 553 (1101)
Q Consensus 489 ~---------~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~~~-~s~d~~~l 553 (1101)
. +...--...++.++|.. ..+|++|+.|-..++||.+.......-. .+.....|+. |+|.+-
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-- 262 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-- 262 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc--
Confidence 1 11112245677888874 4799999999999999964322111100 0011111221 122211
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.. .++.+ .... ...+-++|+|+|..|++.-....|+++|+..++....+.
T Consensus 263 --kn----~~gn~----------~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 --KN----SQGNL----------DRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred --cC----ccccc----------ccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 01101 0000 135558999999888886666689999999887665553
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-12 Score=129.75 Aligned_cols=300 Identities=11% Similarity=0.128 Sum_probs=195.2
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.+..++|++.-..++++..|-.|++|+-... ....++
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst--~pt~Lk----------------------------------------- 136 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST--CPTKLK----------------------------------------- 136 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC--CCceec-----------------------------------------
Confidence 4678899997778899999999999986542 111111
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCC
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 790 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1101)
......|++++|-|.+...++.+-.+.|.+|.......... .++......
T Consensus 137 -----------------------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~~s~~~ 186 (445)
T KOG2139|consen 137 -----------------------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRMMSTHH 186 (445)
T ss_pred -----------------------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccccccccc
Confidence 11345678888888877777777778899998654321100 000001111
Q ss_pred ccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 791 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 791 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
++++. ..+| .+|+++.+.+||..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|.+++-|+
T Consensus 187 ~qvl~----~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~da 260 (445)
T KOG2139|consen 187 LQVLQ----DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDA 260 (445)
T ss_pred hhhee----CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccc
Confidence 11211 1124 7899999999999999998 56799999999988776655577899999999 999999999999
Q ss_pred cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc----------cceEE--------ee
Q 001319 869 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR----------KSVTI--------HI 930 (1101)
Q Consensus 869 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~----------~~~~~--------~~ 930 (1101)
..++|............--++.|...+|+|+|++|..+.. |.-++|.+...+.- ....+ ..
T Consensus 261 vfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a 339 (445)
T KOG2139|consen 261 VFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA 339 (445)
T ss_pred eeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence 9999965544333444445569999999999997665443 22344444221110 00000 00
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeC---------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc---CCCEEEEE
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVHE---------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSC---NSQLVFAT 998 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~d---------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~---dg~~l~s~ 998 (1101)
....-.+...+++|+|.|.+|++... ..|.+||....-.+...............++|+| +|.+|..+
T Consensus 340 g~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsia 419 (445)
T KOG2139|consen 340 GQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIA 419 (445)
T ss_pred CcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEE
Confidence 01111267889999999999999532 2366777765544444322111133355666665 67777778
Q ss_pred eCCCcEEEEeCC
Q 001319 999 FCDGNIGVFDAD 1010 (1101)
Q Consensus 999 ~~dg~i~vwd~~ 1010 (1101)
=..|.|.-|++.
T Consensus 420 WsTGriq~ypl~ 431 (445)
T KOG2139|consen 420 WSTGRIQRYPLT 431 (445)
T ss_pred eccCceEeeeeE
Confidence 788888887764
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=4.7e-11 Score=135.45 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=188.1
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC--CccEEEEEEccCCCEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~spdg~~la 422 (1101)
..+.+.++-. +||+| +..-.|.+||+..+..+.. ++ +...+..| ++.+.. .+.+++
T Consensus 8 ~~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee--cCCCceEEeeCCchhHhhh--hh-----------hhccccccccccccee-----ccceEE
Confidence 3455555544 46654 3455799999998876642 11 11224445 111111 233444
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe--EE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV--YS 499 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v--~~ 499 (1101)
++..-+.+..=+..-. .+..-.+.|....+..+.+ .++.+..+..+.+|| ..+..+.......... .+
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5543333333222211 1112333455566666777 577777789999999 6666555554322211 12
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE-
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~- 578 (1101)
+-+-...+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++++++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 22222334578999999999999998865555678999999999999999999999996 8999999999988776
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
..-+|.. .+..++|.|+ .++++++|-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 6667776 7888889887 99999999999999765 444446655543 36889999999999999999999999998
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 654
No 227
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=2.8e-09 Score=129.44 Aligned_cols=504 Identities=13% Similarity=0.152 Sum_probs=281.0
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEE----ecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLW----ELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
..+.|.++.|-++...+ +.+..+|.|.+. +..+..... ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~l-~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESL-CIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCcE-EEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 35789999999998754 667889999999 544433221 23346799999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCcee--------
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~~~-------- 487 (1101)
..||..+.+++|.+-+- +.+. |....+.++ |.. ..++.|..+.=.-|. ..|+..
T Consensus 133 Ella~vT~~~~l~~mt~-~fd~-------------i~E~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTR-DFDP-------------ISEVPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEec-cceE-------------EEEeecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 99999999998877542 2111 111111111 100 234433222211222 122210
Q ss_pred ------EEeecCCcCeEEEecccCCCccEEEEecc------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 488 ------FNFEGHEAPVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 488 ------~~~~~h~~~v~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
..+. +...-..|+| .+||.++++.+. -+.+|+|+-+ +.....-..-.+--.+++|-|.|+++|+
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 1112 3334455666 668899988775 2579999854 3333333322333457899999999998
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecc---cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe--eccCCCCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAG---FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLP 630 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~ 630 (1101)
... ......|.+|.- +|-....|.. .....+..+.|++++..|+..-.|. |++|...+...... +.... ..
T Consensus 274 ~q~-~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~ 349 (928)
T PF04762_consen 274 SQR-LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SE 349 (928)
T ss_pred EEE-cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CC
Confidence 875 333456777763 4443333333 2334688899999999999977665 99999988764332 22222 22
Q ss_pred CCCeeEEecC-CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 631 NLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 631 ~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.+..+.|+|. ...|.+.+.+|.+..++..-.. ..++.
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v---------------------~~s~~--------------------- 387 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV---------------------SRSPG--------------------- 387 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEE---------------------EecCC---------------------
Confidence 3556999994 5567777777887776643110 00000
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccC
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 789 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1101)
.+|+...+++.-+...+++-.+......|. +..+
T Consensus 388 -----------------------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPP--------Ms~~--- 421 (928)
T PF04762_consen 388 -----------------------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPP--------MSSY--- 421 (928)
T ss_pred -----------------------------------CCccCceEEEEEeCCeEEEecccccCCCch--------Hhce---
Confidence 000011111122222333332221111100 0000
Q ss_pred CccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceE--------EEEee----------CCCCCeeE
Q 001319 790 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--------MTTFM----------SPPPASTF 850 (1101)
Q Consensus 790 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~--------~~~~~----------~~~~~i~~ 850 (1101)
. .....+|.+++|++++..+|+-. ||.|.+|....... ...+. .....+..
T Consensus 422 ---~-------l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 422 ---E-------LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred ---E-------EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 0 12567899999999987665554 99988888543211 11111 12345788
Q ss_pred EEEecCCCCEEEEEeCC---CcEEEEEeecce---EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 001319 851 LAFHPQDNNIIAIGTED---STIHIYNVRVDE---VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 851 l~~s~~~~~~la~g~~d---g~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~ 924 (1101)
++|.. +..+++....+ ..+.++++...+ .......-.+.+..+...++...++.-..||.|...+........
T Consensus 492 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~ 570 (928)
T PF04762_consen 492 LAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQI 570 (928)
T ss_pred EEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcccc
Confidence 88987 66666666554 678888874332 233333344566666666666557777789988866665533211
Q ss_pred ceEEeecCCCCCCCcceEEEcCCCC--EEEEE--eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNADQV--RMLVV--HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
...+.. ..-..+....+.. .++.| ..+.+++ ++..+ ...+++..+. +.+|+....
T Consensus 571 ---~~fp~~---c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l---------a~~~tSF~v~--~~~Ll~TT~ 629 (928)
T PF04762_consen 571 ---VKFPQP---CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL---------ASNCTSFAVT--DSFLLFTTT 629 (928)
T ss_pred ---ccCCCC---CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE---------ecCCceEEEE--cCEEEEEec
Confidence 111110 1111222222222 23333 2344433 12221 4557777774 667777777
Q ss_pred CCcEEEEeCC
Q 001319 1001 DGNIGVFDAD 1010 (1101)
Q Consensus 1001 dg~i~vwd~~ 1010 (1101)
...+++.++.
T Consensus 630 ~h~l~fv~L~ 639 (928)
T PF04762_consen 630 QHTLKFVHLN 639 (928)
T ss_pred CceEEEEECc
Confidence 7889999988
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=146.61 Aligned_cols=290 Identities=16% Similarity=0.220 Sum_probs=220.5
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.-..+.|+.+|++| +.|+.-|.|-.+|+.+++...... -...|..+.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccEE-EecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 45778899999987 567789999999999988765311 234788999999999999884
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEeccc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~ 504 (1101)
...+.|||-..-+ +. -++.| ..|..+.|.|-.- +|++++..|.++.-| .+|+.+..+..-.+.+..++-+|
T Consensus 190 -K~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 5569999976533 33 23334 4599999999876 899999999999999 99999999988888898888776
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
- +..+-.|...|+|.+|.....+....+..|.++|.++++.++|+|+++.+. |..++|||++....+.++...
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp- 334 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP- 334 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC-
Confidence 4 368889999999999999999999999999999999999999999999986 889999999988776666552
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEE-CCCC--eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.....+++|..| +++++....|.||. .-.+ ..-..+-.|.-...|..+.|.|-...|-+|...|.-.+.-...|
T Consensus 335 -~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 335 -HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred -CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 245567787654 45555556899994 2221 12122222222347899999998888888877776666555555
Q ss_pred ccccccccCCCcc
Q 001319 662 LRSLRAVENPPFE 674 (1101)
Q Consensus 662 ~~~~~~~~~~~~~ 674 (1101)
...+..++..+++
T Consensus 412 ePN~Ds~e~nPfe 424 (545)
T KOG1272|consen 412 EPNYDSLEDNPFE 424 (545)
T ss_pred CCCcchhccCcch
Confidence 5555555554443
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.6e-13 Score=149.97 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=150.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999987643 459999999886433 3334456778999999995 345677788777
Q ss_pred EEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCCeEEEEecC--CCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--TMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 479 iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
||. ..+..+..+..+.+......|++ ||+.|+..+ .++...+|.++ ++... .+...+......+|+|||+++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEE
Confidence 776 55555667766666666778877 667776554 35667777654 33322 222233344568899999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC---cEEEEECCCCeeeEeeccCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+..+.. .+...|.+||+.+++......+. ......|+|||++|+.++.++ .+++.+. ++.....+..+.+
T Consensus 343 a~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-- 415 (427)
T PRK02889 343 AYISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-- 415 (427)
T ss_pred EEEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--
Confidence 977642 23457999999988765433321 234578999999998877443 3566666 4555555543322
Q ss_pred CCCeeEEecC
Q 001319 631 NLPRLRFSKE 640 (1101)
Q Consensus 631 ~v~~v~~s~~ 640 (1101)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 4677788763
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.9e-12 Score=147.72 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=161.5
Q ss_pred CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCccccc
Q 001319 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1101)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 443 (1101)
..|.+||.+..... .+..|...+.+.+|||||+.||..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 37888887654332 25567889999999999999998764 468999999988643
Q ss_pred ceeeecccCcEEEEEEecCCCceEEEEecCCce--EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--
Q 001319 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG-- 518 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~-- 518 (1101)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||..+..+..+..+.+......|+| ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~ 314 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSP 314 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCC
Confidence 35566777889999999995 4456666665 7777855555666776776677788877 5677766553 33
Q ss_pred eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
.|.+||+..+.... +......+....|+|||++++..... .+...|.+||+.++.. +.+... ..+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCC
Confidence 57778876654433 33334456678999999999887642 2345789999866543 333221 1355688999999
Q ss_pred EEEEEeCC------CcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 599 HFLAVGED------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 599 ~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 98875532 3688888876554 3443221 356677776
No 231
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=3.9e-14 Score=144.94 Aligned_cols=233 Identities=14% Similarity=0.174 Sum_probs=194.5
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
...-..+.++.+|++|+.|+..|.|..+|+.+++... ++. -...|.++.|..+.+ +++. .....+.|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHh-hhhceEEEecCCCc
Confidence 4466789999999999999999999999999987655 332 345699999998888 4554 45789999999999
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
.++.++.|. .|..+.|.|- --+|++++..|.++.-|+.+++....+....+.+..|+-+|-+..+-+|.. .|+
T Consensus 202 ElHClk~~~-~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhcC-chhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 999998765 5888888774 367888999999999999999999888888888999999999888888875 899
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
|.+|.....+++..+..|.+ .+.++++.++|.++++.|.|..++|||++....+.++... + +...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999988 8999999999999999999999999999988776666542 1 46788888666 444
Q ss_pred EEEcCCcEEEEEc
Q 001319 646 VTTADNGFKILAN 658 (1101)
Q Consensus 646 ~~~~d~~i~iwd~ 658 (1101)
.+ ....+.||.-
T Consensus 350 ~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 350 LS-YGDHVQIWKD 361 (545)
T ss_pred ee-cCCeeeeehh
Confidence 43 4457889953
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=7.3e-13 Score=149.83 Aligned_cols=236 Identities=12% Similarity=0.061 Sum_probs=151.9
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-.+.--........+...+.+.+|||||++++.+.. .+..|.+|++.+++... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 55544333333344456778999999999997654432 24579999998876432 111
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CCceEEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iw 480 (1101)
..+.+..++|||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+. |+..+ .++...||
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEE
Confidence 22334568999999999865 3344 58999999876433 4445567889999999994 44444 34444555
Q ss_pred --EcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 481 --d~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
|..+.....+..+.......+|+| ||+.|+..+.+ ..|.+||+.++..... .. ........|+|||++++.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVL-TD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEEe-CC-CCCCCCceECCCCCEEEE
Confidence 544444555554444556677876 66777665543 3588899887764432 22 223456789999999998
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+.++ +...+.++++ +|+..+.+.++.+ .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87632 2445788887 4555566666544 566677776
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.5e-12 Score=148.23 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=157.6
Q ss_pred CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCccccc
Q 001319 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1101)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 443 (1101)
..|.+||...+... .+..+...+.+.+|||||+.||..+. +..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 36889998654322 14556778999999999999998874 3469999998876432
Q ss_pred ceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCCe-
Q 001319 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~- 519 (1101)
+..+.+...+.+|+|||+. ++++.+.++ .|.+||..+..+..+..+.......+|++ ||+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344555668899999996 344555555 69999944444566666666566778877 667776655 3454
Q ss_pred -EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 520 -i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
|.++++.+++... +...+......+|+|||++++.... .++...|.+||+.+++......+. ......|+|||+
T Consensus 317 ~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 5556665554332 2233344557899999999988754 223457999999888765332221 233468999999
Q ss_pred EEEEEeC---CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 599 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
+++..+. .+.|++++...+ ....+.... ..+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 9887664 346888888543 444443322 2466777776
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=3.2e-13 Score=140.83 Aligned_cols=120 Identities=22% Similarity=0.385 Sum_probs=106.8
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44788899999999999998 99999999999998888887778999999999 99999999999999999999999999
Q ss_pred eeccCCCCeeEEEEcC-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001319 883 KLKGHQKRITGLAFST-----------------------------------SL-------------NILVSSGADAQLCV 914 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~-----------------------------------d~-------------~~l~s~s~Dg~v~l 914 (1101)
.-.+|.+.|..++|.| ++ -++.+.+.|-++++
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25778899999999
Q ss_pred EECCCCcccc
Q 001319 915 WSIDTWEKRK 924 (1101)
Q Consensus 915 wd~~~~~~~~ 924 (1101)
||+.......
T Consensus 449 WDlteD~L~~ 458 (636)
T KOG2394|consen 449 WDLTEDVLVP 458 (636)
T ss_pred Eecchhhccc
Confidence 9998755433
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=7.5e-13 Score=139.13 Aligned_cols=285 Identities=14% Similarity=0.142 Sum_probs=208.9
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC--CccEEEEEE
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAW 414 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~ 414 (1101)
+++-++|...-+.|..||||+|++|+|..--.|++||+..-... +..| ...|...-.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEe
Confidence 34557788889999999999999999999999999999765432 2233 345666667
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
|.|-..++.-..|.+|.+-..-+ .... + .-...-.+++++.-... |..++....|+-++ ..|+-+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy~----~-RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHYR----T-RIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eeee----e-ecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 77777777778888887654332 1111 0 01112344555544443 34444455677788 889999999888
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------CC-----ceEEEEEccCCCEEEEeecCCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GH-----WCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~-----~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
.+.+++|.+++.. .+|++|+.+|.|.+||.+.......+... .. .|+++.|+.+|-.+++|..
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 8999999987743 68999999999999998876655433221 11 4899999999999999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCC--CCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
.|.+.|||+++.+++..-.....-++..+.|.+. ++.+++ .....++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 8999999999988776654444446777888665 344444 355689999999999988886543 5899999999
Q ss_pred CCEEEEEEcCCcEEEEEccc
Q 001319 641 GNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~ 660 (1101)
+.+++++..+..+..|-+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999988887776543
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.1e-12 Score=148.59 Aligned_cols=237 Identities=18% Similarity=0.153 Sum_probs=150.9
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc--CcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|..+.-.......+.+.+.+.+.+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~ 237 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VAN 237 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eec
Confidence 5555543333444556888999999999999764443222 359999998886532 222
Q ss_pred CCccEEEEEEccCCCEEEE-EECCCeEEEEee--cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 405 VPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las-~~~d~~i~vwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+.+.+....|+|||+. +++++..++...+|.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEE
Confidence 3345678999999999875 566777666655 4443 33 35556666778899999995 233444456667776
Q ss_pred --cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 482 --~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
..+.....+..+.......+|+| ||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..
T Consensus 313 ~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 313 MPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEE
Confidence 34433333332333344567766 667887766554 69999998776544322 2334678999999999988
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
+.. .+...+.+.+. ++...+.+..+.+ .+...+|+|
T Consensus 389 ~~~-~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 389 TQQ-GGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred Eec-CCCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 753 23456777777 4555555544333 455566665
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.1e-12 Score=149.24 Aligned_cols=237 Identities=14% Similarity=0.109 Sum_probs=150.6
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEec--cCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~--d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-++.-.........+...+.+.+|||||++++.+... +..|.+||+.+++... +..
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~ 245 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VAS 245 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ecc
Confidence 444443333444555678899999999999976444322 3469999998876532 222
Q ss_pred CCccEEEEEEccCCCEEEE-EECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce--EEE
Q 001319 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~--v~i 479 (1101)
+.+...+++|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+. ++++...++. |.+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYR 320 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 3344567899999998874 44554 5999999987643 34556666678999999994 2333334554 666
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+|..+.....+..+.......+|+| +|+.|+..+.++ .|.+||+.++.... +. +........|+|||++++..
T Consensus 321 ~dl~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 321 VAASGGSAERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred EECCCCCeEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEE
Confidence 6643333444433334445678877 667777654432 68999987776553 32 22245567999999998887
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
+.. .+...|.+++... ...+.+..+.+ .+...+|+|
T Consensus 397 s~~-~g~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 397 TRE-GGRGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred Eec-CCceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 653 3456788898854 34444443322 444556665
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=5.9e-12 Score=123.40 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=168.8
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCC--CeeEEEEecCCCCEEE-EEeCC------CcEEEEEe
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPP--ASTFLAFHPQDNNIIA-IGTED------STIHIYNV 875 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~~la-~g~~d------g~v~iwd~ 875 (1101)
....+++|+.|...++++.+...++|+.+..+....-..+.+ .+..+-|- .++|| +|+.+ +.|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998899999876544332222222 23334443 23444 34333 47999996
Q ss_pred ecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ccccceEEeecCCCCCCCcceEEEcCCCCEEEE-
Q 001319 876 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW-EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV- 953 (1101)
Q Consensus 876 ~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~- 953 (1101)
...+++.++. ...+|.++.++++ .+|+.- ...|+||..... +....+... ..+.+..+++-..+...||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~----~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETR----SNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecc----cCCCceEeecCCCCceEEEcC
Confidence 6667777765 6688999999876 455443 567999999843 322222221 11234444444444455555
Q ss_pred Ee-CCeEEEEEcCCcee--eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCceeEeeCCCCcCCCccc
Q 001319 954 VH-ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVL 1029 (1101)
Q Consensus 954 ~~-d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 1029 (1101)
|. -|.|+|-|+...+. ...+.. |.+.|.|++++-+|..|||++..|+ |||||..+|.++..++.
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~A---H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--------- 222 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINA---HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--------- 222 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEc---ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec---------
Confidence 43 68999999986665 244444 4899999999999999999999997 89999999999998874
Q ss_pred CCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1030 NGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1030 ~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
..+...+.+++|+| +..+|+.+|+-|+|.||.+....
T Consensus 223 -G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 223 -GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 23344566999999 79999999999999999998755
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=2.8e-13 Score=141.28 Aligned_cols=153 Identities=21% Similarity=0.378 Sum_probs=116.4
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc---------ccceeec--ccccCccccccccccCCccEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---------KPFKIWD--MAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~---------~~~~~~d--~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
+..|+|+.|-|.+..++..+-.+|.+.++|..-.-.... ..|.+.. ......|+. .+.--++.|...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccce
Confidence 478999999998887877888999999998632111110 0111111 111111111 122235589999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
+|||||++||+.+.||.++|||..+.+.+.. ++.--+...|++|||||+ ++++|++|--|.||. ..++.+..-.
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 9999999999999999999999999776653 344556799999999999 899999999999999 8899999999
Q ss_pred cCCcCeEEEecc
Q 001319 492 GHEAPVYSICPH 503 (1101)
Q Consensus 492 ~h~~~v~~v~~~ 503 (1101)
||...|..|+|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999996
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.5e-11 Score=128.31 Aligned_cols=282 Identities=11% Similarity=0.119 Sum_probs=184.9
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
.......++|++|+ ++|.+ .+..+.|++..++..+.. .....+.++.|||.|.||.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999998 55664 677999999988754321 12227899999999999976
Q ss_pred E-----ECC-----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecC
Q 001319 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1101)
Q Consensus 424 ~-----~~d-----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h 493 (1101)
= ..+ -.+.+|+++++..... ...+...+ ++..|+.|.. ++.--..+.+++|+..+-....-+-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s~-~q~k~Q~~--W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRSQ-IQKKMQNG--WVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehhh-eehhhhcC--cccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 2 122 3478999999543321 11122222 6899999987 44444467899999433333233336
Q ss_pred CcCeEEEecccCCCccEEEE-----eccCCeEEEEecCCCCeeeecc---CCCCceEEEEEccCCCEEEE-eecCC----
Q 001319 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFS-CGTSK---- 560 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~-~~~~~---- 560 (1101)
...|..+.++|.+.-..+++ .+.-+.+++|.+........+. .-...-..+.|.+-|.-|++ .+.+-
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77899999988755555554 3556789999876222111110 01112235677777764433 22221
Q ss_pred ---CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE--EeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 561 ---DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 561 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
-|+..+++.+++.......+ ...++|.++.|+|+++.+++ |-.-..+.|||++ +.++..+.. ++-+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccce
Confidence 24667888888844443333 33458999999999987766 4578899999986 455555432 245899
Q ss_pred EEecCCCEEEEEEcC---CcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTTAD---NGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d---~~i~iwd~~~~ 661 (1101)
-|+|.|++++.++.+ |.|.+||+.+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch
Confidence 999999999988764 78999999874
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.9e-12 Score=146.21 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=154.9
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|..+.-.........|...|.+.+|||||++|+.+.. .+..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 55555444444555568889999999999997644432 24689999998876532 344
Q ss_pred CCccEEEEEEccCCCEEEE-EECCCe--EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CCc--eEE
Q 001319 405 VPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~--~v~ 478 (1101)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++.. .+..+.+.....+|+|||+. ++..+ .++ .|.
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667788999999998874 444544 777888887643 35566667788999999995 44333 333 678
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+||..+.....+..+.+.+....|+| +|+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.++.
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEE
Confidence 88865655566655555666778877 66777765543 36788887554433 2222 234678899999999987
Q ss_pred eecCCCCC--ceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 556 ~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 66432221 4688888876554 33332 11 344455655
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.49 E-value=4.3e-09 Score=108.72 Aligned_cols=403 Identities=12% Similarity=0.091 Sum_probs=228.6
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEE----E--eccCcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----G--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llas----g--~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+|..+.......+...|-+-|+--.|+|||+.+..+ | ...+.+.+.+.+.|+..+.
T Consensus 61 lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------------------ 122 (668)
T COG4946 61 LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------------------ 122 (668)
T ss_pred HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE------------------
Confidence 888888888888888899999999999999965432 1 2234566777677765431
Q ss_pred ccccCCccEE-EEEEccCCCEEEEEECCCe----EEEEeecCCcc-cccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 401 IFKDVPISVS-RVAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 401 ~~~~h~~~v~-~~~~spdg~~las~~~d~~----i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
++-| ...+ -+-|+|||+.|++...-.- -.+|.+..... .. . -.-++.+.+.+- ||. ++.|-.-
T Consensus 123 TyfG--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~--LnlGpathiv~~-dg~---ivigRnt 191 (668)
T COG4946 123 TYFG--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---P--LNLGPATHIVIK-DGI---IVIGRNT 191 (668)
T ss_pred EEec--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---e--ccCCceeeEEEe-CCE---EEEccCc
Confidence 1222 2333 3459999999988754321 22333332111 11 1 123445555553 443 3332211
Q ss_pred c------------eEEEEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc
Q 001319 475 K------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW 540 (1101)
Q Consensus 475 ~------------~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 540 (1101)
- .=++|- ..|+....+..-.+.|++-.+.. + +.-+....||.=.+|..+-...-......-..
T Consensus 192 ydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd 268 (668)
T COG4946 192 YDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD 268 (668)
T ss_pred ccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCCchhhhcCCchh
Confidence 1 124565 33333333333333343322211 1 23333444554444543322221111111112
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc---c---CCc-ceEE---E-EEeC-CCCEEEEEeCCCc
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKK-SNGV---V-QFDT-TQNHFLAVGEDSQ 608 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~-~v~~---~-~~~~-~~~~l~~~~~dg~ 608 (1101)
..+--.+.||+.++... .|.|+++|.++.++...--+ . ... .+.- + .|++ +|++++..+. |+
T Consensus 269 YY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 269 YYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GK 342 (668)
T ss_pred ccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-Cc
Confidence 33334567999988754 56799999987665433222 1 000 0110 1 1333 4667766654 67
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC-cEEEEEccccccccccccCCCcccccCcceeeeeee
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1101)
..+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-|+|..++.. +.+
T Consensus 343 aFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--kr~------------------- 397 (668)
T COG4946 343 AFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--KRI------------------- 397 (668)
T ss_pred EEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceE--EEe-------------------
Confidence 7777766555444322 22466677777888899999998 899999887621 111
Q ss_pred ccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 688 SASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
...-+.|.++..+++|+.++++.....+-+.|++
T Consensus 398 ----------------------------------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 398 ----------------------------------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred ----------------------------------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 1134567788888898888887777777666654
Q ss_pred CCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC----eEEEEECCCceEEEEee
Q 001319 768 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg----~i~vwd~~~~~~~~~~~ 842 (1101)
.. ....... ...+-|+.++|+|+++++|.+- +| .|+++|+.+++......
T Consensus 432 ng----------------------nv~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 432 NG----------------------NVRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred CC----------------------CeeEecc---cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 32 2111111 2556789999999999999996 54 59999999888765443
Q ss_pred CCCCCeeEEEEecCCCCEEEEEe
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~ 865 (1101)
..+-=.+-+|.| ++++|..-+
T Consensus 487 -~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCC-CCcEEEEEe
Confidence 233345567888 787776544
No 243
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=6e-11 Score=127.76 Aligned_cols=512 Identities=10% Similarity=0.128 Sum_probs=299.9
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
||.+.|.-+.|+.+.+. |.+...+|.|.+|-+-.|+-... .+-......|.+++|..||..|
T Consensus 69 GH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcCCCcEE
Confidence 59999999999999885 47888999999999988764321 2234456789999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE--------e---
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--------F--- 490 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~--------~--- 490 (1101)
+....||.|.|=.+++.+.... .+++.. ...+.|++|.+ .++.+-..|.+.++|..|.-... .
T Consensus 131 cIvYeDGavIVGsvdGNRIwgK--eLkg~~--l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGK--ELKGQL--LAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred EEEEccCCEEEEeeccceecch--hcchhe--ccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 9999999999988887654332 333322 34789999998 56667778999999955532111 1
Q ss_pred -ecCCcCeEEEeccc------CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC-
Q 001319 491 -EGHEAPVYSICPHH------KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG- 562 (1101)
Q Consensus 491 -~~h~~~v~~v~~~~------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~- 562 (1101)
......|..+.|.. .++...++.+-..|.+.+..-.+......+... ..+....|+++|..|++++.+.+.
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDAD 283 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCccccc
Confidence 11112355555532 236678999999999998876665555554433 678899999999999999875432
Q ss_pred ---C-ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 563 ---D-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 563 ---~-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
+ +.|+++. .-|+.+.+++.... .|+.++|-..|-.++.+ .|+.|++=+++..-.-..+. ..+.+-
T Consensus 284 ~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e--------~TvVy~ 352 (1189)
T KOG2041|consen 284 EPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE--------ETVVYV 352 (1189)
T ss_pred CccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee--------eEEEEE
Confidence 2 2455554 45777777776655 78889998776555544 56777776665422111111 011111
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
..+.-+ ..-.|.+||..+..+.++...+.. ++++..+-=.+......+. +... ..
T Consensus 353 y~~~e~----p~y~i~Fwdtk~nek~vK~V~~~~---------~~a~~~ehCvL~~~~d~~~--i~e~----------s~ 407 (1189)
T KOG2041|consen 353 YQKEEL----PQYGIMFWDTKTNEKTVKTVTHFE---------NMAFYREHCVLINRQDDGV--IPEY----------ST 407 (1189)
T ss_pred EccCCC----cceEEEEEecccChhhhhhhccee---------ehheecccEEEEeccccCC--Ccch----------hh
Confidence 111100 012355677666655555544321 1111111111100000000 0000 00
Q ss_pred EEeCCCeEEEEcCCCCC-----CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCC---eeeeccccccccCC
Q 001319 719 IVDSGQCRLVTMPESTD-----TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK---ATASAVPQHWLPSS 790 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~ 790 (1101)
+...+....+.+-...+ ..-.|......-++..++.++.+ .+.+|.+...++...-. .........=+..+
T Consensus 408 le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 408 LENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred hhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 01111111111111111 11223333334455555555544 67788876554321100 00000111111112
Q ss_pred c----cceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEe
Q 001319 791 G----LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 791 ~----~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~ 865 (1101)
| .+-....+..+..++|.+++.+ .+++..+. .|.|.-|.+.+......... +..|..++..- +...+|+-.
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~-n~~~y~~~lNC-nstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV-NPSIYSIKLNC-NSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc-CchheeEeecc-Ccchhhhhh
Confidence 2 1111112223578899999886 46777776 79999999988777666543 56788899888 778888888
Q ss_pred CCCcEEEEEee---cceEEE-eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 866 EDSTIHIYNVR---VDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 866 ~dg~v~iwd~~---~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
.-|.+.+.|+. +|..+. .+......|+++.|..|+..|..--....+.+++-..
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence 88999998887 343333 4445567799999988876555444444466665443
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=5.1e-10 Score=123.10 Aligned_cols=208 Identities=16% Similarity=0.219 Sum_probs=138.6
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCC-ceEEEE---ee----------CCCCCeeEEEEecCCCCEEEEEe-CCC
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGT-EDS 868 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~la~g~-~dg 868 (1101)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 355788899999888885 78899999876 443332 11 1234578999999 888777654 445
Q ss_pred cEEEEEeecce--EE--Eeec-cCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEECC--CCccccceEEeecCC-CCC-CC
Q 001319 869 TIHIYNVRVDE--VK--SKLK-GHQKRITGLAFSTSLNILVSS-GADAQLCVWSID--TWEKRKSVTIHIPAG-KTP-TG 938 (1101)
Q Consensus 869 ~v~iwd~~~~~--~~--~~~~-~h~~~V~~l~~s~d~~~l~s~-s~Dg~v~lwd~~--~~~~~~~~~~~~~~~-~~~-~~ 938 (1101)
.|++|++.... +. ..+. ........++|+||++++.+. -.+++|.++++. .+.......+..... ... ..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999998654 32 2222 334567899999999987655 457789999998 443333333332211 111 25
Q ss_pred cceEEEcCCCCEEEEEe--CCeEEEEEcC--Cc--eeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeC--
Q 001319 939 DTRVQFNADQVRMLVVH--ETQLAIYDAS--KM--ERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDA-- 1009 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~--d~~i~v~d~~--~~--~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~-- 1009 (1101)
...++++|||++|.++. .+.|.+|+++ ++ +.+..+... ....+.++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 77899999999999965 6789999994 23 333444332 45589999999999999877 5678999876
Q ss_pred CCCceeEe
Q 001319 1010 DTLRLRCY 1017 (1101)
Q Consensus 1010 ~~~~~~~~ 1017 (1101)
++|.+...
T Consensus 324 ~tG~l~~~ 331 (345)
T PF10282_consen 324 DTGKLTPV 331 (345)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 56766544
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.5e-10 Score=120.85 Aligned_cols=355 Identities=11% Similarity=0.103 Sum_probs=217.1
Q ss_pred CeEEEEecCCCCeeeeccC---CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe
Q 001319 518 GKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1101)
..+.+|............. ....++..++|++|++++.+. +..++|++..++..+.+.... .+..+-|+
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fS 82 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFS 82 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeec
Confidence 3466676544222222211 244578899999999999886 678999999888644444432 46778999
Q ss_pred CCCCEEEEE-----eC-----CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 595 TTQNHFLAV-----GE-----DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 595 ~~~~~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
|-|++|.+- .. .-.+.+|+++++.....+...... -++..|+.|..+.+ --..+.+.+|++.+....
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~ 159 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI 159 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccce
Confidence 999988762 12 235779999996655555443332 26888988875433 233567889987653111
Q ss_pred cccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEE
Q 001319 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLL 744 (1101)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 744 (1101)
...+ |...|+.+.
T Consensus 160 ~~kl-------------------------------------------------------------------~~~~i~~f~ 172 (566)
T KOG2315|consen 160 QHKL-------------------------------------------------------------------SVSGITMLS 172 (566)
T ss_pred eeee-------------------------------------------------------------------eccceeeEE
Confidence 1111 334445555
Q ss_pred eecCc-ccEEE------eecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 745 YTNSA-VGLLA------LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 745 ~s~~~-~~l~~------~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
++|.+ ...++ .+.-+.+++|.+....+...-.. ..+ ....-..+.|++-|.
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~------------------ksF----Fkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN------------------KSF----FKADKVQMKWNKLGT 230 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh------------------ccc----cccceeEEEeccCCc
Confidence 55542 11111 23346788887652211100000 000 111122345555554
Q ss_pred eE---EEEc-C---------CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEE--EEeCCCcEEEEEeecceEEE
Q 001319 818 YV---MSAT-G---------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA--IGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 818 ~l---a~~~-d---------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la--~g~~dg~v~iwd~~~~~~~~ 882 (1101)
-| ++.. | .++++++++...+.-.+. ..++|.++.|+| +++-++ .|-.-..+.|||++ +.++.
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-~~~v~ 307 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-GKPVF 307 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEEEcCC-CCEeE
Confidence 22 1211 2 358888888444444443 378999999999 665443 45567789999976 55555
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---- 955 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---- 955 (1101)
.+ -.++=+++-|+|.|++++.+|.+ |.|.|||+.+.+++..... ...+-+.|+|||.+++++.
T Consensus 308 df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--------~~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 308 DF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--------ANTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred eC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc--------CCceEEEEcCCCcEEEEEecccc
Confidence 54 45777899999999999998876 7899999999766544332 4567789999999999842
Q ss_pred ---CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc
Q 001319 956 ---ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990 (1101)
Q Consensus 956 ---d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 990 (1101)
|+.++||+... ..+..... .++...+.|-|
T Consensus 378 lrvdNg~KiwhytG-~~l~~~~f----~sEL~qv~W~P 410 (566)
T KOG2315|consen 378 LRVDNGIKIWHYTG-SLLHEKMF----KSELLQVEWRP 410 (566)
T ss_pred EEecCCeEEEEecC-ceeehhhh----hHhHhheeeee
Confidence 78999999863 33333222 12455566654
No 246
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.45 E-value=7.2e-13 Score=126.10 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=128.7
Q ss_pred cchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC---------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHH
Q 001319 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1101)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1101)
..++++.|||++||...||.++|..+.+|+|+... -..+|.+|..|+.++|++.++++.+..-+.... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 45789999999999999999999999999999771 568999999999999999999996554333334 89
Q ss_pred HHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC--chHHHHHHHHHHHhhc
Q 001319 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD--TKTARGIMLIELKKLI 151 (1101)
Q Consensus 74 ~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~ 151 (1101)
|.+++|+++||+.++..++|++|++++|.|+...+++.++.|...|..--++.....+ ... ....|.++.+.+.+.|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888888888877755444222211 111 2345777777776655
Q ss_pred ccCcccccccCCCCCC-hHHHHHHHHHHHHHH
Q 001319 152 EANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1101)
Q Consensus 152 ~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1101)
-...- .+ ..+|..|++.-+..|
T Consensus 182 L~~~~---------~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---------HESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---------ccccchHHHHHHHHHHHH
Confidence 33111 11 347888886555555
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=4.3e-11 Score=124.74 Aligned_cols=283 Identities=12% Similarity=0.089 Sum_probs=189.2
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
-++..++|||.|++| ++. .-..|.+|.-.....+.. --...|..+.|||.++||.+=
T Consensus 33 ~p~~~~~~SP~G~~l-~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGTYL-FSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcchhe-ehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeeee
Confidence 478999999999965 543 455799998776553321 123479999999999999985
Q ss_pred ECC---------------CeEEEEeecCCcccccceeeecccCc--EE-EEEEecCCCceEEEEecCCceEEEEEcCCce
Q 001319 425 FTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1101)
Q Consensus 425 ~~d---------------~~i~vwd~~~~~~~~~~~~l~~h~~~--V~-~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~ 486 (1101)
+.. ..+.+||..+|..+. .+.+...+ .+ -+.|+-|+++ ++=- ....++|++.++..
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEecCCcc
Confidence 433 349999999998776 34444443 44 6889999883 3322 34568888854432
Q ss_pred e-EEeecC-CcCeEEEecccCCCccEEEE-----eccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec-
Q 001319 487 L-FNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT- 558 (1101)
Q Consensus 487 ~-~~~~~h-~~~v~~v~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~- 558 (1101)
. ..+..- ...|....|+|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-..
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 1 112111 24577777888766666554 456789999998866555443333333456788888988775432
Q ss_pred ------CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE--eCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 559 ------SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 559 ------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+.-++..++++++....+.... ... .+|...+|.|.++.+++. -.+-.+.++|++.. +...+...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~---- 316 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ---- 316 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc----
Confidence 1123567888888744433332 223 378999999998887764 47889999999866 44444332
Q ss_pred CCCeeEEecCCCEEEEEEcC---CcEEEEEcccccc
Q 001319 631 NLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLR 663 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~ 663 (1101)
.=+.+.|+|.+++++.++-| |.+.+||..+...
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 23678899999999998765 6788888766533
No 248
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.4e-11 Score=124.25 Aligned_cols=271 Identities=11% Similarity=0.127 Sum_probs=190.9
Q ss_pred CCcEEEEEEecCCceEEEEEe-ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGS-SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~-~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
...|.+++|--|++.=+..+. .|..+............. .|+.. .....+..|..++.. || .|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EEE
Confidence 457888888877654333343 555666665544433221 12221 234456677777765 34 566
Q ss_pred EEECCCeEEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecCC--ceEEEEE-cCCceeEEeecC-----
Q 001319 423 VAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGH----- 493 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d--~~v~iwd-~~~~~~~~~~~h----- 493 (1101)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++...+ ++++||.. ..+++|| ...+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998554211 11123333 45777777776665 67779999 8899999 555544332211
Q ss_pred --C--cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 494 --E--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 494 --~--~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
. -.++++.|.+..+...+++++.-+.+|+||...+.. ...+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 235567777654468999999999999999987654 4567777889999999999999999865 788999
Q ss_pred EeCCCCeeEEE-ecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
+|++.++.... +.+..+ .+..+..+|.+++++++|-|+.|+|+|+.+.+++........ .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998887 666666 899999999999999999999999999999777766655433 45665544
No 249
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.44 E-value=2.3e-10 Score=119.48 Aligned_cols=360 Identities=11% Similarity=0.128 Sum_probs=227.6
Q ss_pred EEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE
Q 001319 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|+...+..+..+.. ..+.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec---CCceecccCccccee
Confidence 3465555444444444566789999999999999875 44689999887765555543 257789999999999
Q ss_pred EEEeCC---------------CcEEEEECCCCeeeEeeccCCCCCCCC-eeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 601 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
.+-... ..+.+||..+|.++..+.......... -+.|+-+..++|-. ....+.|+++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 986543 359999999999999887665432234 67888888777655 3457888886 32111
Q ss_pred cccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEE
Q 001319 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLL 744 (1101)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 744 (1101)
.+++... ....|....
T Consensus 165 -----~~p~~~l-----------------------------------------------------------r~~gi~dFs 180 (561)
T COG5354 165 -----EHPFKNL-----------------------------------------------------------RPVGILDFS 180 (561)
T ss_pred -----cCchhhc-----------------------------------------------------------cccceeeEE
Confidence 1111111 112223333
Q ss_pred eecCcc--cEEE-----eecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 745 YTNSAV--GLLA-----LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 745 ~s~~~~--~l~~-----~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
++|.+. .|+. .+..+.+++|.+..... +....+ ..-.-..+.|.+.|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~---------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV---------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCe---------------------eeeeee----EeecccEEEEecCCc
Confidence 333321 1111 23346666666542111 000000 111123456666676
Q ss_pred eEEEE------------cCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE--eCCCcEEEEEeecceEEEe
Q 001319 818 YVMSA------------TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG--TEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 818 ~la~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g--~~dg~v~iwd~~~~~~~~~ 883 (1101)
++..- +...++++++....+.... .-.++|..++|.| .++.+++. -.+..+.++|+... +..
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~- 311 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRF- 311 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc-eEE-
Confidence 55432 1245888888743333332 4578999999999 55554443 47889999998866 333
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-----
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----- 955 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----- 955 (1101)
......=..+.|+|.+++++.++.| |.|-+||......... ...+ ...+-+.|+||+.++.+..
T Consensus 312 -~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~----~~~~---~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 312 -YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG----AFNG---LNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred -ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE----Eeec---CCceEeeccCCceEEEecCCCccc
Confidence 3345556778999999999998877 6799999987543221 2222 4556678999999988732
Q ss_pred --CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 956 --ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 956 --d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
|..+.|||+..-.. ...+.+.|.|.|++..+.+.+.
T Consensus 384 ~~Dn~i~l~~v~g~~~-----------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 384 RVDNSIKLWDVYGAKV-----------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccCcceEEEEecCchh-----------hhhhhccccCCcccceeeccCC
Confidence 67899999875432 2456788888899888777665
No 250
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.2e-11 Score=128.41 Aligned_cols=284 Identities=18% Similarity=0.219 Sum_probs=193.4
Q ss_pred cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCC-cCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 449 ~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
+|...-+.|..+|||++ ++++|..--.|++||...-.+ .|..|. ..+..+.+..+ |-..++.-..|.+|.+-.-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSL-KFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSL-KFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAK-- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEccccee-eeeecccccceeEEEecc-chhhheEeecCceeeehhh--
Confidence 57778899999999997 788999999999999443333 233332 33333322211 3234445556777765421
Q ss_pred CCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC
Q 001319 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1101)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1101)
.+....+.. ......|+++.-..-|++++. ...|+-++++.|+.+..|..... .++++.+++-...|++|+.+|
T Consensus 124 ~G~hy~~RI-P~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 124 YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred cCeeeeeec-CcCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEecccCc
Confidence 111111111 112345555543333444433 45689999999999998887665 799999999988999999999
Q ss_pred cEEEEECCCCeeeEeeccCC---------CCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccC
Q 001319 608 QIKFWDMDNVNILTSTDAEG---------GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1101)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1101)
.|.+||.+....+..+.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+....+..-
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---------- 267 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---------- 267 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc----------
Confidence 99999999877766654332 23458999999999999999999999999997662211100
Q ss_pred cceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC
Q 001319 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 758 (1101)
Q Consensus 679 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 758 (1101)
|
T Consensus 268 ---------------------------------------------------------h---------------------- 268 (703)
T KOG2321|consen 268 ---------------------------------------------------------H---------------------- 268 (703)
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC--CCeEEEEcCCeEEEEECCCce
Q 001319 759 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSATGGKISLFNMMTFK 836 (1101)
Q Consensus 759 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~dg~i~vwd~~~~~ 836 (1101)
+..-+|..+.|.+. +..+++.....++|||-.+|+
T Consensus 269 -------------------------------------------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 269 -------------------------------------------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred -------------------------------------------CCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 12334445555443 445666666789999999999
Q ss_pred EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 837 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 837 ~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
....+.. ...+..+|+-| ++-+++++.+++.+..|-+..
T Consensus 306 ~~asiEp-t~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 306 PMASIEP-TSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceeeccc-cCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence 9888775 44599999999 888888999998888776654
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=1.1e-09 Score=116.24 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=132.0
Q ss_pred eEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-ceEE--
Q 001319 808 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVK-- 881 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-~~~~-- 881 (1101)
..++++|||+++.+.. ++.|.+.|+.+++.+.++.... +..-...+. +. .+ +-+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3578889999888764 5789999999999988887532 222222222 22 22 223445444433322 1111
Q ss_pred --EeeccCCCCe-eEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCCEE
Q 001319 882 --SKLKGHQKRI-TGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 882 --~~~~~h~~~V-~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l 951 (1101)
..+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+.......... .+-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111100111 0014455 8887776666 9999999766543333322221 12233555569999999998
Q ss_pred EEEe-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEee
Q 001319 952 LVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 952 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.+.. .+.|.++|..+++.+..+.. ...+..++|||||+ +|++.. .++.|.|.|..+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 25899999999999999887 56899999999999 887666 6788999999999999988
Q ss_pred C
Q 001319 1019 A 1019 (1101)
Q Consensus 1019 ~ 1019 (1101)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 4
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1.2e-11 Score=122.39 Aligned_cols=342 Identities=13% Similarity=0.232 Sum_probs=215.9
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
..+.++|+.+ .++....-|..+-+++.++|.++++|--. .++.-..+.. ....++.++.+.++.+.|++|-.+|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEE
Confidence 4456677766 56666666777889999999999999544 4444333332 2234788999999999999999999988
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
-+.+..........+ ...
T Consensus 94 efs~sedfnkm~~~r--------------------------------------------------------------~~~ 111 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLK--------------------------------------------------------------DYL 111 (404)
T ss_pred EEEhhhhhhhcchhh--------------------------------------------------------------hhh
Confidence 776653311111110 013
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
.|...+..+.|+-....+++.+.|..+. |-......... +..+. ...+++.+
T Consensus 112 ~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg----------------~Y~~~---------~~~t~~~~-- 163 (404)
T KOG1409|consen 112 AHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLG----------------GYNFE---------TPASALQF-- 163 (404)
T ss_pred hhhcceeeEEecCCceeEEEeccccceE-EEeeccCCccc----------------ceEee---------ccCCCCce--
Confidence 4788888999998888899998886654 32211100000 00000 00001111
Q ss_pred CCCeEEEEc-CCeEEEEE--CCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCC
Q 001319 815 NDSYVMSAT-GGKISLFN--MMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKR 890 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~ 890 (1101)
|-.+...|. .|.|.+.. .....++.++.+|.+++++++|.+ ...+|.+|..|..|.+||+.-++- ..++.+|.+.
T Consensus 164 d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 164 DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence 111333444 45555443 345677889999999999999999 889999999999999999986543 4577899999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE-------------------------EeecCCCCC---CCcceE
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT-------------------------IHIPAGKTP---TGDTRV 942 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~-------------------------~~~~~~~~~---~~v~~~ 942 (1101)
|..+...+--+.|++++.||.|.+|+.+........- +.....+.. ..+...
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~ 322 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGK 322 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcc
Confidence 9999999888999999999999999987543221110 000000000 112222
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCc-----eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 943 QFNADQVRMLVVHETQLAIYDASKM-----ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 943 ~~s~d~~~l~~~~d~~i~v~d~~~~-----~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
+-+....+...+..-.+++.|.-.. .....-.+|.. ...|+.+.+-.+-.+|+|++.|..|+|||+..
T Consensus 323 c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 323 CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2222222223344444555543211 11001111222 56799999988888999999999999999875
No 253
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=6.2e-11 Score=117.15 Aligned_cols=357 Identities=15% Similarity=0.232 Sum_probs=214.5
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc----eeEEeecCC------------cCeEEEecccCCCccEE
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR----KLFNFEGHE------------APVYSICPHHKENIQFI 511 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~----~~~~~~~h~------------~~v~~v~~~~~~~~~~l 511 (1101)
..+-|.++.|..+|. +|++|..+|.|.++. ...+ ....+..|. ..|..+.|....+...+
T Consensus 24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 345689999999999 899999999999998 2222 223344443 35788889888888888
Q ss_pred EEeccCCeEEEEecCCCCeeee-----ccCCCCceEEEEE---ccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 512 FSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWCTTMLY---SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 512 ~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
+..+.|++|++|.+........ .......++++.. .+....+ ...+.+.+...
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v-------------------ea~prRv~aNa 162 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV-------------------EASPRRVYANA 162 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee-------------------eeeeeeecccc
Confidence 8899999999998866544331 1111112222221 1111111 11233445444
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC-eeeEeeccCCC-----CCCCCeeEEecC-CCEEEEEEcCCcEEEE
Q 001319 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGG-----LPNLPRLRFSKE-GNLLAVTTADNGFKIL 656 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~~-g~~l~~~~~d~~i~iw 656 (1101)
+..-+++++++.|+..++++ .|=.|.+|+++-- +.......... ..-|++..|+|. -+.++..+..|+|++-
T Consensus 163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 44578899999998887776 5678999998642 22222221111 124678889995 4567777788999999
Q ss_pred EccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCC
Q 001319 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDT 736 (1101)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (1101)
|++....+...-. .+ ..|.
T Consensus 242 DmR~~aLCd~hsK--lf-------------------------------------------------------Eepe---- 260 (433)
T KOG1354|consen 242 DMRQSALCDAHSK--LF-------------------------------------------------------EEPE---- 260 (433)
T ss_pred echhhhhhcchhh--hh-------------------------------------------------------cccc----
Confidence 9874411110000 00 0000
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
++.+..... +--..|..+.|+++|
T Consensus 261 --------------------------------------------------dp~~rsffs------eiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 261 --------------------------------------------------DPSSRSFFS------EIISSISDVKFSHSG 284 (433)
T ss_pred --------------------------------------------------CCcchhhHH------HHhhhhhceEEccCC
Confidence 000000000 023447788999999
Q ss_pred CeEEEEcCCeEEEEEC-CCceEEEEeeCCC------------CCe---eEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 817 SYVMSATGGKISLFNM-MTFKVMTTFMSPP------------PAS---TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~-~~~~~~~~~~~~~------------~~i---~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+++++-+--+|++||+ ...+++.+++.|. ..| ..++|+. ++.++++|+..+.+++|++..|..
T Consensus 285 ryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 285 RYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred cEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcc
Confidence 9999988889999998 4566666666554 222 3578888 788999999999999999776643
Q ss_pred E-EeeccCCCC--eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001319 881 K-SKLKGHQKR--ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 957 (1101)
Q Consensus 881 ~-~~~~~h~~~--V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~ 957 (1101)
. .++...... +..+ ..-+.+.+++......+|-.. -.....+...+|+|....+|++..+
T Consensus 364 ~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~--------------ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 364 EDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA--------------LDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred eeecccccccCCccccc---ccceeeecCCCccccccccch--------------hhhhhHHHhhccCCccceeeeeecC
Confidence 2 222222111 1111 112344444444332222110 0011456778999999999998777
Q ss_pred eEEEEE
Q 001319 958 QLAIYD 963 (1101)
Q Consensus 958 ~i~v~d 963 (1101)
.+.+|.
T Consensus 427 nlyif~ 432 (433)
T KOG1354|consen 427 NLYIFQ 432 (433)
T ss_pred ceEEec
Confidence 777763
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2e-09 Score=108.80 Aligned_cols=258 Identities=12% Similarity=0.123 Sum_probs=167.9
Q ss_pred CcccEEEEEeecCcccEEEeecC---CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEe
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~d---g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 812 (1101)
.....+-++++++++.|.++..+ |.+.-|.++ ..+|.+....... ....+-+.+++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD--------------------~~~G~Lt~ln~~~-~~g~~p~yvsv 96 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID--------------------PDDGRLTFLNRQT-LPGSPPCYVSV 96 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc--------------------CCCCeEEEeeccc-cCCCCCeEEEE
Confidence 44455667777777777776554 555555543 2223321111100 12333388999
Q ss_pred cCCCCeEEEEc--CCeEEEEECCC-ceEEEE--eeCCCCC----------eeEEEEecCCCCEEEEEeC-CCcEEEEEee
Q 001319 813 SKNDSYVMSAT--GGKISLFNMMT-FKVMTT--FMSPPPA----------STFLAFHPQDNNIIAIGTE-DSTIHIYNVR 876 (1101)
Q Consensus 813 s~dg~~la~~~--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~l~~s~~~~~~la~g~~-dg~v~iwd~~ 876 (1101)
+++|++|+++. .|.|.++-+.. |.+... +..|.+. +.+..+.| ++++|++.+- --.|.+|++.
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcc
Confidence 99999999997 68999999864 443222 2224443 88999999 8988887763 3479999999
Q ss_pred cceEEEeec---cCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCC--ccccceEEeecCCCC--CCCcceEEEcCCC
Q 001319 877 VDEVKSKLK---GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTW--EKRKSVTIHIPAGKT--PTGDTRVQFNADQ 948 (1101)
Q Consensus 877 ~~~~~~~~~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~--~~~~~~~~~~~~~~~--~~~v~~~~~s~d~ 948 (1101)
.|++...-. ........|.|+|++++..... -+++|-+|..+.. +......+....... ......+.+++||
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence 886543211 2345578999999999876655 5889999999873 332222222222221 2567789999999
Q ss_pred CEEEEEe--CCeEEEEEcCCc-eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCC--CCcee
Q 001319 949 VRMLVVH--ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDAD--TLRLR 1015 (1101)
Q Consensus 949 ~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~--~~~~~ 1015 (1101)
++|.++. ...|.+|.++.. ..+........+....+...|+++|++|+++.+++ .|.||.++ +|++-
T Consensus 256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 256 RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 9999975 457888887643 22333332233355688999999999999888654 58888665 45543
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=8.1e-10 Score=121.56 Aligned_cols=251 Identities=15% Similarity=0.243 Sum_probs=164.0
Q ss_pred CCCEeEEEecCCCCeEEEEc-----CCeEEEEECCC--ceE--EEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-----GGKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY 873 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-----dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iw 873 (1101)
......++++|++++|.+.. .|.|..|++.. +++ +............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 44556789999999998875 25788888765 333 344443455667899999 888887776 58999999
Q ss_pred Eeec-ceEEEe---ec----------cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCc--cccceEEeecCCCCC
Q 001319 874 NVRV-DEVKSK---LK----------GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWE--KRKSVTIHIPAGKTP 936 (1101)
Q Consensus 874 d~~~-~~~~~~---~~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~--~~~~~~~~~~~~~~~ 936 (1101)
++.. +.+... +. .-.....++.|+||++++++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 443322 11 11244778999999998887642 3469999998765 322223333333
Q ss_pred CCcceEEEcCCCCEEEEEe--CCeEEEEEcC--Cce--eeeEeccC---CCCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 001319 937 TGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KME--RIRQWTPQ---DALSAPISCAVYSCNSQLVFATF-CDGNIGV 1006 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~--~~~--~~~~~~~~---~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~v 1006 (1101)
...++++|+|+++++.+.. ++.|.+|++. ++. .+..+... .........++++|||++|+++. .+++|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6789999999999998865 7899999988 443 22222221 11123688999999999988765 5678999
Q ss_pred EeCC--CCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCeEEEEeCCCCCC
Q 001319 1007 FDAD--TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1007 wd~~--~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~-~Dg~v~iWd~~~~~~ 1069 (1101)
|+++ ++.+...-.. ......+..++++| ++++|+++. .++.|.+|++....+
T Consensus 272 f~~d~~~g~l~~~~~~----------~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTV----------PTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEECTTTTTEEEEEEE----------EESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEEecCCCceEEEEEE----------eCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCC
Confidence 9993 3443221110 12233577899999 577666655 778999998754433
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=4.3e-11 Score=120.72 Aligned_cols=179 Identities=17% Similarity=0.226 Sum_probs=132.5
Q ss_pred eecCcccEEE-eecC--CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC--CCeE
Q 001319 745 YTNSAVGLLA-LGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYV 819 (1101)
Q Consensus 745 ~s~~~~~l~~-~~~d--g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l 819 (1101)
-++....|++ |+.. ..+++||+....+ +|....-..- .-+..-.-.++.+.|-+. ...+
T Consensus 156 ~~~~~p~Iva~GGke~~n~lkiwdle~~~q-------------iw~aKNvpnD---~L~LrVPvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 156 QTDTDPYIVATGGKENINELKIWDLEQSKQ-------------IWSAKNVPND---RLGLRVPVWITDIRFLEGSPNYKF 219 (412)
T ss_pred cCCCCCceEecCchhcccceeeeeccccee-------------eeeccCCCCc---cccceeeeeeccceecCCCCCceE
Confidence 3344444555 6666 7899999875432 3332221100 000012334567888776 7788
Q ss_pred EEEc-CCeEEEEECCCce-EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe-eccCCCCeeEEEE
Q 001319 820 MSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAF 896 (1101)
Q Consensus 820 a~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~ 896 (1101)
|++. -+.+++||...++ ++..+.--..+++++...| +++++.+|..-|.+..||+..++.+.. +.+-.+.|+++..
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEE
Confidence 8888 7999999998664 5777777788999999999 999999999999999999999998877 8999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 897 STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 897 s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
+|.+++|+++|-|..|||+|+++.+.+....+. ...+.+.+.++
T Consensus 299 hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-------s~lt~il~~~~ 342 (412)
T KOG3881|consen 299 HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-------SRLTFILLRDD 342 (412)
T ss_pred cCCCceEEeeccceeEEEeecccchhhhhhhhh-------ccccEEEecCC
Confidence 999999999999999999999996655443332 44555555443
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.1e-10 Score=131.25 Aligned_cols=241 Identities=12% Similarity=0.055 Sum_probs=148.5
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceE--EEEEeccC--cEEEEecCCCceeccccceeecccccCcccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL--LLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l--lasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 402 (1101)
+|.++.--............+..-+|||||+.+ +.+...+| .|.+.++.+++... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 555543333333333455667788999999763 23444443 57777887775432 2
Q ss_pred ccCCccEEEEEEccCCCEEEEEEC-----CCeEEEEeecCCc--ccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~~-----d~~i~vwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.+.....+|+|||+. ++++...++
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCC
Confidence 223445567899999999997653 2234557776532 1221 12233344567899999995 333444566
Q ss_pred eEEEEE--c--CCceeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCeeeeccCCCCceEEEEEcc
Q 001319 476 LIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1101)
Q Consensus 476 ~v~iwd--~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 548 (1101)
...+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++...... ....+....|+|
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSp 380 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAI 380 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECC
Confidence 555664 3 2344555555556677788877 56777665443 468999998876654332 234567899999
Q ss_pred CCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1101)
||+.|+.... ..+...|+++|+.+++......+. + .+...+|+|-
T Consensus 381 DG~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 381 DSLHLVYSAG-NSNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 9999886653 234678999999888765554432 1 3445677764
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.2e-10 Score=131.32 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=143.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--e
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~ 476 (1101)
+..+...+.+.+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887643 369999999886432 3333445667899999995 334555555 6
Q ss_pred EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+||..+.....+..+........|++ ||+.|+..+ .++ .|.++++.+++.... ...........|+|||+++
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEE
Confidence 8888954445556666666666677876 556665544 333 566677766654322 2223334567899999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeeccCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..+++++...+ ....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 887642 23446899999888654333221 12235899999999886643 35777777543 333343322 2
Q ss_pred CCCeeEEec
Q 001319 631 NLPRLRFSK 639 (1101)
Q Consensus 631 ~v~~v~~s~ 639 (1101)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456677776
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=131.85 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=142.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce--
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~-- 476 (1101)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466789999999999999987543 258899998876432 2222334457899999996 3445566664
Q ss_pred EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+||..+..+..+..+.......+|++ ||+.|+..+ .++ .|.++|+.+++... +..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777855555566666666667788877 556665544 344 45556666555432 22233334567899999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeeeEeeccCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+..+.. ++...|.++|+.+++........ ......|+|+|+.++..+. ++ .+++++. ++.....+....+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 23446777898888754332221 1223479999999887653 33 3777787 4555555544322
Q ss_pred CCCeeEEec
Q 001319 631 NLPRLRFSK 639 (1101)
Q Consensus 631 ~v~~v~~s~ 639 (1101)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466778876
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=2.1e-11 Score=120.61 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=213.1
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeEEee-cCCcCeEEEecccCCCccEEEEeccCCeEEE
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~ 522 (1101)
.++||.+.|++...-|-.. -+++.+.|.+++||- . .|+--..+. ....+++++.+.. +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5789999999998888777 599999999999998 3 343322222 2334567777655 5578888888999988
Q ss_pred Eec----CCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 523 WLY----DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 523 wd~----~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
+.+ +..........|...+..+.|+....++++++. |..+.---.+.+..+..+.-.. ....+.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~-- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFET--PASALQFDAL-- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeec--cCCCCceeeE--
Confidence 754 334444556677888999999999999999875 4334322233333222211100 0011111111
Q ss_pred EEEEEeCCCcEEEEECCC--CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccc
Q 001319 599 HFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+.+.|...|.|..-.+.. -.++.++.+ +...+.+++|.+..+.|.+|..|..+.+||+.........+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------- 236 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------- 236 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee--------
Confidence 455566667766665543 344555544 45689999999999999999999999999986542221111
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
.+|...|..+.+.+-.+.+++++
T Consensus 237 ---------------------------------------------------------~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 237 ---------------------------------------------------------QGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred ---------------------------------------------------------ccchhhhhhhhhhhhheeeeecc
Confidence 33667777777778888899999
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeec-----ccccccc------CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCC
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASA-----VPQHWLP------SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG 825 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg 825 (1101)
.||.|.+|+++.......+...... ....|+. ..--+.....+. -...+...+-+....+...|..=
T Consensus 260 edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crk--cg~avc~~c~s~~~~~p~mg~e~ 337 (404)
T KOG1409|consen 260 EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRK--CGKAVCGKCSSNRSSYPTMGFEF 337 (404)
T ss_pred CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhh--hhhhcCcccccCcccccccccee
Confidence 9999999998765443333222211 1222222 111111111110 11222222222222233333333
Q ss_pred eEEEEECC-------CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 826 KISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 826 ~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
.+++-|.- +...+..+..-...|+.+.+.. .-.+|++++.|..|+|||+..
T Consensus 338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEechh
Confidence 45554431 1122333333345689998887 677899999999999999863
No 261
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=6e-11 Score=117.32 Aligned_cols=163 Identities=18% Similarity=0.340 Sum_probs=116.2
Q ss_pred EEEEEEccCCCEEEEEEC----------CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 409 VSRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 409 v~~~~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
=..+.|+|+|++|++-.. -+...+|-++..........+ ...++|.+++|+|+|+.+.++.|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999999886433 234666666433222111122 234579999999999975566677788999
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc---CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+||.+++.+..+. ...++.+.|+| +|++|+.++. .|.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 87 lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 87 LYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9997788887774 56788999987 6689988864 4679999999766665543 334789999999999999
Q ss_pred eecC--CCCCceEEEEeCCCCeeEEE
Q 001319 556 CGTS--KDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 556 ~~~~--~~~~~~i~iwd~~~~~~~~~ 579 (1101)
+... ...++.++||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8752 2346778899874 554444
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.7e-09 Score=107.88 Aligned_cols=255 Identities=11% Similarity=0.236 Sum_probs=175.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc----CCeEEEEECCC--ceEE--EEeeCCCCCeeEEEEecCCCCEEEEEeC-CCcEEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT----GGKISLFNMMT--FKVM--TTFMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIY 873 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg~v~iw 873 (1101)
.....+-++++|+++.|.++. +|.|..|.++. |++. ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999998887763 36677777653 5543 22222334458899999 8988888874 5799999
Q ss_pred Eeec-ceEEE--eeccCCCC----------eeEEEEcCCCCEEEEEe--CCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 874 NVRV-DEVKS--KLKGHQKR----------ITGLAFSTSLNILVSSG--ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 874 d~~~-~~~~~--~~~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
-+.+ |.+.. ....|.+. +-...+.|++++|++.. .| .|.+|++..|............+ ..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G---~G 192 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG---AG 192 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC---CC
Confidence 9965 43321 22235554 88899999999999875 44 49999999888776666555444 77
Q ss_pred cceEEEcCCCCEEEEEe--CCeEEEEEcCCc-eeeeEeccCC------CCCCCEEEEEEccCCCEEEEEe-CCCcEEEEe
Q 001319 939 DTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQD------ALSAPISCAVYSCNSQLVFATF-CDGNIGVFD 1008 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~------~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd 1008 (1101)
.+.+.|+|++++..+.. +++|.+|..+.. ..+..+.... .......+|.+++||++|.++. ....|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 89999999999988854 899999998863 2222222211 1256788999999999999876 244788887
Q ss_pred CCC--CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCcccc
Q 001319 1009 ADT--LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-DGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1009 ~~~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~-Dg~v~iWd~~~~~~~~~~ 1073 (1101)
+.. +++...... ..+...+-...++| ++++|+.++. +.+|.+|..+...+.+..
T Consensus 273 V~~~~g~L~~~~~~----------~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 273 VDPDGGKLELVGIT----------PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EcCCCCEEEEEEEe----------ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 764 332221111 23334566788999 5666666654 567999988766554443
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.5e-10 Score=118.97 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=160.5
Q ss_pred EEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC-----CcEEEEEeecceEEEe
Q 001319 809 CIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDEVKSK 883 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~~~~~ 883 (1101)
-+.||.|++++|--..+.|.||+..+..++..-......|....|+| .+.+||.-+.. .++.+-.+.+++.++.
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeee
Confidence 36789999999998889999999988666544444456799999999 88999876532 3678888888887777
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeC-------C---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGA-------D---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~-------D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
-.-|.-.=..|-|-.+|.+|+.--. - ..+.|+.+..... ....+. -...+...+|-|.|..+++
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~ve-----lke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVE-----LKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeee-----cchheeeeeeccCCCeEEE
Confidence 6655544455777788888875321 1 1244555543221 111111 1157889999999999888
Q ss_pred --Ee--CCeEEEEEcCC-ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeEeeCCCCcCC
Q 001319 954 --VH--ETQLAIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATF---CDGNIGVFDADTLRLRCYIAPSTYLS 1025 (1101)
Q Consensus 954 --~~--d~~i~v~d~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~ 1025 (1101)
+. ..++.+|..++ ..........+ ....+.+.|||.|++++.+. ..|.+.++|.....+...-
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~------- 533 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA------- 533 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-------
Confidence 33 46789998873 32222222222 45678999999999988754 5789999998853332221
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEEC------CCeEEEEeCCCCC
Q 001319 1026 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLT------DGSVKVMEPSESE 1068 (1101)
Q Consensus 1026 ~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~------Dg~v~iWd~~~~~ 1068 (1101)
|......+.+.|.| -|++++|++. |..-++|++....
T Consensus 534 -----~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 534 -----SPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred -----CccccccccceECC-CCCEEEEeeehhhhccccceEEEEeecHH
Confidence 11112335799999 4999999885 5667888886544
No 264
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=6e-11 Score=117.30 Aligned_cols=155 Identities=11% Similarity=0.198 Sum_probs=108.9
Q ss_pred eEEEEecCCCCEEEEEeC----------CCcEEEEEeecc-eEEEeec-cCCCCeeEEEEcCCCCEEEEE--eCCCcEEE
Q 001319 849 TFLAFHPQDNNIIAIGTE----------DSTIHIYNVRVD-EVKSKLK-GHQKRITGLAFSTSLNILVSS--GADAQLCV 914 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~----------dg~v~iwd~~~~-~~~~~~~-~h~~~V~~l~~s~d~~~l~s~--s~Dg~v~l 914 (1101)
..+.|++ .|.+|++-.. -|...+|.++.. .....+. ...++|.+++|+|+|+.+++. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567888 6655544332 134556666332 2333333 244679999999999987654 46789999
Q ss_pred EECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc
Q 001319 915 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990 (1101)
Q Consensus 915 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 990 (1101)
||++. +.. ..... ..+..+.|+|+|++|++++ .|.+.+||..+.+.+.... ...++.++|||
T Consensus 88 yd~~~-~~i-----~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKG-KKI-----FSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSP 153 (194)
T ss_pred EcCcc-cEe-----EeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcC
Confidence 99962 221 11111 4667899999999999964 4689999999988887765 33579999999
Q ss_pred CCCEEEEEeC------CCcEEEEeCCCCceeEeeC
Q 001319 991 NSQLVFATFC------DGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 991 dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 1019 (1101)
||++++++.. |+.++||+.. |+++....
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998764 7889999985 66665543
No 265
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.2e-09 Score=115.01 Aligned_cols=322 Identities=12% Similarity=0.179 Sum_probs=196.8
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC-----------CCc
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-----------DSQ 608 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~ 608 (1101)
.-+-+.|||.|.||++-. ..-|.+|--.+...++.|.. . .+.-+.|||..+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~H-p--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYH-P--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccC-C--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 346789999999999986 44589998777666666542 2 5777999999999999552 257
Q ss_pred EEEEECCCCeeeEeeccCCCC-CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeee
Q 001319 609 IKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1101)
+.|||+.+|.....+...... ..-.-..||.|++++|.... ..|.||+..+- ..+....
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Ks--------------- 343 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKS--------------- 343 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecccc---------------
Confidence 999999999998887663222 22345789999999987776 46778775432 1111100
Q ss_pred ccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 688 SASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
-.-..|....|+|.+
T Consensus 344 -----------------------------------------------lki~gIr~FswsP~~------------------ 358 (698)
T KOG2314|consen 344 -----------------------------------------------LKISGIRDFSWSPTS------------------ 358 (698)
T ss_pred -----------------------------------------------cCCccccCcccCCCc------------------
Confidence 022233344444443
Q ss_pred CCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc---C---CeEEEEECCCceEEEEe
Q 001319 768 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---G---GKISLFNMMTFKVMTTF 841 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---d---g~i~vwd~~~~~~~~~~ 841 (1101)
.+||.-. + .++.+..+.+++.+++-
T Consensus 359 -------------------------------------------------~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 359 -------------------------------------------------NLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred -------------------------------------------------ceEEEEcccccCCcceEEEEecCccceeeec
Confidence 3333221 0 12344444444444443
Q ss_pred eCCCCCeeEEEEecCCCCEEEEE----------eCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC--
Q 001319 842 MSPPPASTFLAFHPQDNNIIAIG----------TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-- 909 (1101)
Q Consensus 842 ~~~~~~i~~l~~s~~~~~~la~g----------~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D-- 909 (1101)
..+.-.=..+-|-. .|.+|+.- +.-..+.|+.+......-..-.-...|...+|-|.|..+++-+..
T Consensus 390 nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 390 NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 33322222334444 44444432 222246667666544322222345779999999999987776543
Q ss_pred -CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE----eCCeEEEEEcCCceeeeEeccCCCCCCCEE
Q 001319 910 -AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYDASKMERIRQWTPQDALSAPIS 984 (1101)
Q Consensus 910 -g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~ 984 (1101)
.++.+|.+.+....... +..... ...+.+.|+|.|++++++ ..|.+.++|++-..+...-.+. -...+
T Consensus 469 k~tvsfY~~e~~~~~~~l-Vk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e---h~~at 541 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSL-VKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE---HFAAT 541 (698)
T ss_pred ccceeEEEeecCCCchhh-hhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc---ccccc
Confidence 57999998852221111 111111 457789999999999984 3788999999853332222221 24567
Q ss_pred EEEEccCCCEEEEEeC------CCcEEEEeCCC
Q 001319 985 CAVYSCNSQLVFATFC------DGNIGVFDADT 1011 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~------dg~i~vwd~~~ 1011 (1101)
.+.|.|.|+|++|++. |.-.++|+...
T Consensus 542 ~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 542 EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 8999999999999874 44566666653
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1.2e-10 Score=133.48 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=145.2
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc--CcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-.+.--......+.+...+...+|||||++|+.+...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444433334445556788999999999999775554333 368899998876532 222
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~i 479 (1101)
..+.+...+|||||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 23345578999999998854 4444 6888899887643 24456666777899999995 333444444 5777
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+| .+++ ...+...........|+| +|+.|+..+. ++ .|.+||+.+++....... .......|+|||+.++.
T Consensus 316 ~d~~~g~-~~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGR-AERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCC-EEEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEE
Confidence 77 4554 333332222233456766 5567766554 33 578889887665433222 22335689999999988
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+. ..+...|.+++... ...+.+....+ .+...+|+|
T Consensus 391 ~~~-~~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATR-QQGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEe-cCCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 764 23455688888753 33334443222 344455655
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.8e-10 Score=127.03 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=141.6
Q ss_pred cccCCccEEEEEEccCCCEEE---EEECC--CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC---
Q 001319 402 FKDVPISVSRVAWSPDGNYVG---VAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--- 473 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~la---s~~~d--~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~--- 473 (1101)
+......+.+-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|+|||++ ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 333455677889999998633 33333 358888998876443 3344555667899999996 3333322
Q ss_pred -CceEEEEE-cC---CceeEEeecCCcCeEEEecccCCCccEEEEec-cCCeEEEEec--CC-CCeeeeccCCCCceEEE
Q 001319 474 -DKLIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLY--DT-MGSRVDYDAPGHWCTTM 544 (1101)
Q Consensus 474 -d~~v~iwd-~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~--~~-~~~~~~~~~~~~~v~~~ 544 (1101)
|..+.+|+ .. ++......++.+.....+|+| ||+.|+..+ .+|...+|.+ +. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 33455577 33 232222323333445678877 667666554 5676566644 32 22233344444567789
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC---CCcEEEEECCCCeeeE
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 621 (1101)
.|||||++|+..+.. ++...|.+||+.+++......+ . ..+....|+|||+.|+.... ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999987642 3456799999998876554433 2 24566889999998886542 4578999998877655
Q ss_pred eeccCCCCCCCCeeEEecCC
Q 001319 622 STDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g 641 (1101)
.....+ .+...+|+|-.
T Consensus 410 Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred eecCCC---cccCceecCCC
Confidence 443322 35677888743
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.3e-10 Score=131.22 Aligned_cols=210 Identities=16% Similarity=0.104 Sum_probs=139.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--e
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~ 476 (1101)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999999875432 3455666778999999985 344555444 5
Q ss_pred EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+||..+.....+..+........|++ ||+.|+..+. ++ .|.+|++.+++.. .+......+..+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEE
Confidence 8888854444555655555555667766 6677765543 33 5777777665433 333345567788999999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC---cEEEEECCCCeeeEeec
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1101)
+.+.... +...|.+||+.++........ . ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~l~~~-~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERVLTDT-G--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEEccCC-C--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9876522 234799999988654333222 1 233467999999998876543 45555543 44444443
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1.1e-10 Score=132.64 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=137.1
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
..+.+...+.+.+|||||++++.+...++ .|.+||+.+++... +....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence 44456778999999999997755543333 58888988776432 111122344689999
Q ss_pred CCCEEEEE-ECCCe--EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEEEE-cCCceeEEe
Q 001319 417 DGNYVGVA-FTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 417 dg~~las~-~~d~~--i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~iwd-~~~~~~~~~ 490 (1101)
||+.||.. +.++. |.+||+++++.. .+..+.......+|+|||+. ++++...++ .|.++| .+++ ...+
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSRL 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEEE
Confidence 99988764 55564 788888877533 34455566788999999995 334444444 456666 4444 3333
Q ss_pred ecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 491 EGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
..........+|+| ||++|+..+. ++ .|.++|+.++..... ... .......|+|||+.++.... .++...++
T Consensus 346 t~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~ 420 (448)
T PRK04792 346 TFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTT-YQGKQVLA 420 (448)
T ss_pred ecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEe-cCCceEEE
Confidence 32222234457766 5567766544 44 345567666654332 211 12234589999999987764 23455688
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
+++. +|...+.+....+ .+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 8887 4555555554433 455566765
No 270
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=1.3e-10 Score=133.44 Aligned_cols=224 Identities=17% Similarity=0.133 Sum_probs=143.7
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc--CcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|..+.-.......+.+...+.+.+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 4544433334455556777899999999999765443222 479999998875432 233
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~i 479 (1101)
+.+.+.+++|+|||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.+
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~-l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS-IAFTSDRGGSPQIYM 306 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE-EEEEECCCCCceEEE
Confidence 44567789999999988754 3333 5888999886533 24445555667899999995 233333333 5777
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+|..+.....+..+...+....|++ +|++++.++.++ .|.+||+.++..... ... .......|+|||++|+..
T Consensus 307 ~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 307 MDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNGRMILYA 382 (417)
T ss_pred EECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCCCEEEEE
Confidence 7844444555555556677778876 567888777765 788888877544332 222 234566899999999887
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEec
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
... ++...+.+.+.. ++....+.
T Consensus 383 ~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 383 TTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EeC-CCcEEEEEEECC-CceeeECC
Confidence 752 233456666643 33344443
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=4.9e-10 Score=110.92 Aligned_cols=167 Identities=13% Similarity=0.246 Sum_probs=117.5
Q ss_pred CCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCc-eE--EEEeeCCC-----CCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 802 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KV--MTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-~~--~~~~~~~~-----~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
.|...|.++.++.|+..+.+++|=+|.+|+++-- +. +..++.+. .-|++..|+|....+++..+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 4888999999999999999999999999998622 11 22233332 3489999999778899999999999999
Q ss_pred EeecceE------EEe----------eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CccccceEEeec-----
Q 001319 874 NVRVDEV------KSK----------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIP----- 931 (1101)
Q Consensus 874 d~~~~~~------~~~----------~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~-~~~~~~~~~~~~----- 931 (1101)
|+....+ +.. +.+--..|.++.|+++|+++++-+. -+|++||+.. .+...+..++..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 9984321 111 1112346899999999999998654 4799999943 233333322211
Q ss_pred ----CCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCcee
Q 001319 932 ----AGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 969 (1101)
Q Consensus 932 ----~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 969 (1101)
+....-.-..++|+.++.++++|+ .+-+++|+...|..
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 111112234689999999999976 88899999776643
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.23 E-value=1.2e-08 Score=108.37 Aligned_cols=239 Identities=9% Similarity=0.049 Sum_probs=151.9
Q ss_pred ecCCCCeEEEEc-----------CCeEEEEECCCceEEEEeeCCCC-------CeeEEEEecCCCCEEEEEe-C-CCcEE
Q 001319 812 LSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT-E-DSTIH 871 (1101)
Q Consensus 812 ~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~~~~~la~g~-~-dg~v~ 871 (1101)
+||||+.+.++. ++.|.+||+.+++.+.++..... ....++++| ||++|++.. . ++.|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999876653 36799999999999988875322 234789999 888888766 3 68999
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcC-CCCE
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVR 950 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~ 950 (1101)
+.|+.+++.+.++.--. ...-...+++. .+ +-+.||......+.+.............+...--...-.|.+ ||++
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 99999999998876421 22222222222 22 223444444433332221111111111110000000114455 8999
Q ss_pred EEEEeCCeEEEEEcCC-----ceeeeEeccCC----CCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCC
Q 001319 951 MLVVHETQLAIYDASK-----MERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF----------CDGNIGVFDADT 1011 (1101)
Q Consensus 951 l~~~~d~~i~v~d~~~-----~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~----------~dg~i~vwd~~~ 1011 (1101)
+.++..|.|.+.|+.. .+.+..+.... -..+.+.-+++++||+++++.. ..+.|.++|..+
T Consensus 209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 9888889999999543 33333222110 0133444599999999988743 225799999999
Q ss_pred CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC-EEEEEE-CCCeEEEEeCCCCC
Q 001319 1012 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGL-TDGSVKVMEPSESE 1068 (1101)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~-~l~s~~-~Dg~v~iWd~~~~~ 1068 (1101)
++.+.++.. +. .+..++++| |+. +|++.. .++.|.+.|..+++
T Consensus 289 ~kvi~~i~v-----------G~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 289 GKRLRKIEL-----------GH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEEeC-----------CC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999998873 22 446899999 566 666555 68899999999987
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=6.9e-10 Score=118.72 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=154.0
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEe------c------------CCCceEEEEecCCce
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s------~------------d~~~~~l~s~~~d~~ 476 (1101)
.|-+.|+|....||.+++||...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999987654333332334445555553 1 112237888999999
Q ss_pred EEEEE-cCCceeEEee--cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~--~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+++ ..|+....+. +|.+.|.++.++. +-..|.+++.|+.+..|+................+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 8888777776 5999999998865 44689999999999999999988888888888889999999999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC-----CCEEEEE-eCCCcEEEEECCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1101)
++++ +.|.+||+++++.+.+|.||.. .+.+++|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9985 4799999999999999999988 8999999876 6777774 4666778886554
No 274
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=1.2e-08 Score=114.79 Aligned_cols=295 Identities=13% Similarity=0.092 Sum_probs=175.7
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1101)
.++.++.++.|..+| .+|+.+..+.-.......... ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 577788899999999 899988766543322222222 345788889999999999999988877654433222222
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc----eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
. .+..++.+.. ++.|..||.++|+.+-.+....... .....+. +..++.+..+|.++.+|..+|+.+.
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 2345555443 7889999999999877765432200 0111122 3477788888999999999998776
Q ss_pred eeccCCCC--CCC---CeeEEec--CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 622 STDAEGGL--PNL---PRLRFSK--EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 622 ~~~~~~~~--~~v---~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
........ ..+ ..+.-+| .+..+++++.+|.+..||..++..
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~------------------------------- 263 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV------------------------------- 263 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-------------------------------
Confidence 54321100 000 0000011 233455555555555555544310
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 774 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~ 774 (1101)
+|.
T Consensus 264 --------------------------------------------------------------------~W~--------- 266 (377)
T TIGR03300 264 --------------------------------------------------------------------LWK--------- 266 (377)
T ss_pred --------------------------------------------------------------------EEe---------
Confidence 011
Q ss_pred CCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-cCCeEEEEECCCceEEEEeeCC-CCCeeEEE
Q 001319 775 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSP-PPASTFLA 852 (1101)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~ 852 (1101)
...+ .. ...++ ++..+.++ .+|.+..+|..+++.+...... ........
T Consensus 267 -------------~~~~----------~~----~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 267 -------------RDAS----------SY----QGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred -------------eccC----------Cc----cCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 0000 00 01111 23344444 4788999999888877665321 22223333
Q ss_pred EecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE-EEEcCCCCEEEEEeCCCcEEEE
Q 001319 853 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVW 915 (1101)
Q Consensus 853 ~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~d~~~l~s~s~Dg~v~lw 915 (1101)
. .+..|++++.+|.|+++|..+|+.+.++..+...+.. .++. + ..|+.++.||.|..+
T Consensus 318 i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 V---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred E---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 3 2457888999999999999999999888766654333 2333 3 458889999988765
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=2.5e-09 Score=114.46 Aligned_cols=191 Identities=18% Similarity=0.316 Sum_probs=147.7
Q ss_pred CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE------cc------------
Q 001319 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------SP------------ 416 (1101)
Q Consensus 355 dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~------sp------------ 416 (1101)
.+. ++|....||.++||+..+++.... |. | ...-++..++.+| +|
T Consensus 4 ~~~-~~A~~~~~g~l~iw~t~~~~~~~e--~~---------p-----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 4 ALD-YFALSTGDGRLRIWDTAKNQLQQE--FA---------P-----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred hhh-eEeecCCCCeEEEEEccCceeeee--ec---------c-----chhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 344 568889999999999998876432 11 0 0001223333333 22
Q ss_pred --CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 417 --DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
|-..+|-|...|.|.+|++..|+....+ .-.+|.+.|+++.++.+-. .|.|++.|+.+..|+ .+++.++.+.+.
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccC
Confidence 3446777889999999999999865532 3358999999999998888 899999999999999 888889999999
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC-----CCEEEEeecCCCCCceEEE
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~~~~~~~~i~i 568 (1101)
...+.++++++ ||..+++++ ++|++||+++.+....+.+|..+|++++|..+ |.+++++.. .+.-+.+
T Consensus 144 ~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~ 216 (541)
T KOG4547|consen 144 KPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITV 216 (541)
T ss_pred CCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeE
Confidence 99999999977 578888776 68999999999999999999999999999887 788887653 3445666
Q ss_pred EeCC
Q 001319 569 WNES 572 (1101)
Q Consensus 569 wd~~ 572 (1101)
|-.+
T Consensus 217 w~v~ 220 (541)
T KOG4547|consen 217 WVVE 220 (541)
T ss_pred EEEE
Confidence 6544
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=2.6e-08 Score=112.09 Aligned_cols=212 Identities=7% Similarity=0.059 Sum_probs=130.2
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCe-----eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC---
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPAS-----TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK--- 889 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~--- 889 (1101)
+++...+|.+..||.++|+.+..+....... .+..+. + ..++.+..+|.++.+|..+|+.+........
T Consensus 148 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 3333347888888888888877765432211 112222 3 3677888899999999999987654321100
Q ss_pred -C------e-eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEE
Q 001319 890 -R------I-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLA 960 (1101)
Q Consensus 890 -~------V-~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~ 960 (1101)
. + ....+ .+..++.++.+|.+..||..+|+..-.... ....... .++..+.+ ..++.+.
T Consensus 225 ~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--------~~~~~p~--~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 225 TELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--------SSYQGPA--VDDNRLYVTDADGVVV 292 (377)
T ss_pred CchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--------CCccCce--EeCCEEEEECCCCeEE
Confidence 0 0 11112 245788888899999999999875433221 1111122 23444544 5689999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
.+|..+++.+....... .....+... .+.+|++++.+|.|+++|..+|+.+.++... ...+. .+-
T Consensus 293 ~~d~~tG~~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~----------~~~~~-~sp 357 (377)
T TIGR03300 293 ALDRRSGSELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD----------GSGIA-SPP 357 (377)
T ss_pred EEECCCCcEEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC----------CCccc-cCC
Confidence 99999998775543211 112222222 4678999999999999999999999877631 11111 011
Q ss_pred EEecCCCCEEEEEECCCeEEEE
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
+.. ++.|+.++.||.|..|
T Consensus 358 ~~~---~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 358 VVV---GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEE---CCEEEEEeCCceEEEe
Confidence 111 3458889999999876
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=133.80 Aligned_cols=223 Identities=19% Similarity=0.305 Sum_probs=168.0
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+-..|.++.=+|...++ +||+.||.|++|.+..++.+.. |+ -.|. ..|+.+.|+.+|..+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Y-ltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYY-LTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCceE-EecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCce
Confidence 356789999999998865 7999999999999998877652 21 2233 789999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec---CCceEEEEE--cCCceeEEeecCCcC
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~---~d~~v~iwd--~~~~~~~~~~~h~~~ 496 (1101)
..+..||.+.+|.+.. +.+...+.|.....+..|-. . .+++++ .++.+.+|| ..+..-..-..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 9999999999999882 33346778999999999986 3 456654 677999999 444433333889999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++++++.|. .++|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++.....
T Consensus 2339 aT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2339 ATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFGL 2402 (2439)
T ss_pred ceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccch
Confidence 999999885 48999999999999999988777665543 22 4567778775 88999999999888
Q ss_pred EEEecccCCcc-----eE-EEEEeCCCCEEEEEeCCCc
Q 001319 577 KRTYAGFRKKS-----NG-VVQFDTTQNHFLAVGEDSQ 608 (1101)
Q Consensus 577 ~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~~dg~ 608 (1101)
++++...+... +. .+-+ ...+++++|+.||+
T Consensus 2403 l~~~p~e~ak~gfFr~~g~Q~~v-~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2403 LHTFPSEHAKQGFFRNIGMQINV-GQCNRIFSCGADGT 2439 (2439)
T ss_pred hhcCchhhcccchhhhcCceeee-ccCceEEEecCCCC
Confidence 88776543211 11 1112 23457777777763
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=6.1e-10 Score=116.50 Aligned_cols=241 Identities=12% Similarity=0.216 Sum_probs=168.6
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC-cccc---cceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~-~~~~---~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
.+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+. ...+++.|+.+|.++.|..|-+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999988888899999999999999999742 2222 2336789999999999999988 56655 899
Q ss_pred EEEEE-cCCceeEEee-----cCCcCeEEEecccCCCccEEEEe-ccCCeEEEEecCCCCeeeec-----cCCCCceEEE
Q 001319 477 IKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTM 544 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~~ 544 (1101)
|++|| .-|+.+..+. +..+.|.++ ++-+..+++.+ +...+|+++|.+..+-..++ .++...++++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8887765332 222334443 33344455555 78899999998887655433 3344578999
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEE-EECCCCeeeEee
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTST 623 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 623 (1101)
+..+.|+.++.+-. .|.|.+.|.++|+.+..++...- ..-.++ .|..+.++....|.++.+ |..-.+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998875 88999999999998877664332 111122 244566777778888888 987777655544
Q ss_pred ccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
+.... +..- .-.-|.-|+++.....+.+|.-
T Consensus 957 kpppe--pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chhh--hhccCceeEEeccCcEEEEEec
Confidence 43221 1111 1123566777776677777753
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=8.1e-08 Score=119.44 Aligned_cols=257 Identities=12% Similarity=0.126 Sum_probs=162.8
Q ss_pred eEEEecCC-CCeEEEEc-CCeEEEEECCCceEEEEeeC--C------------CCCeeEEEEecCCCCEEEEE-eCCCcE
Q 001319 808 PCIALSKN-DSYVMSAT-GGKISLFNMMTFKVMTTFMS--P------------PPASTFLAFHPQDNNIIAIG-TEDSTI 870 (1101)
Q Consensus 808 ~~~~~s~d-g~~la~~~-dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~la~g-~~dg~v 870 (1101)
..++++++ |.++++-. ++.|.+||.. +..+..+.+ . -.....+++.+ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46788875 44555544 6889999986 444444332 1 12357899998 66655444 456789
Q ss_pred EEEEeecceEEEeecc--C---------------CCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceE---Ee
Q 001319 871 HIYNVRVDEVKSKLKG--H---------------QKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVT---IH 929 (1101)
Q Consensus 871 ~iwd~~~~~~~~~~~~--h---------------~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~---~~ 929 (1101)
+++|+.++.. .++.+ . -.....++|+| ++..+++.+.++.|++||..++....... ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 22211 0 12346899999 56667777788999999998764321000 00
Q ss_pred ecCCC-----CCCCcceEEEcCCCCEEEEE--eCCeEEEEEcCCceeeeEecc-------------CC-----CCCCCEE
Q 001319 930 IPAGK-----TPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTP-------------QD-----ALSAPIS 984 (1101)
Q Consensus 930 ~~~~~-----~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~~~~~~-------------~~-----~h~~~v~ 984 (1101)
...+. .......++++|++..|.++ .++.|++||+.++......-. .. ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000 11345679999999876664 478999999987653211100 00 0012346
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCC-cCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEe
Q 001319 985 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPST-YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1063 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd 1063 (1101)
.++++++|..+++...++.|++||..++.......... ...........-..+..+++++ +++++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888899999999999887654332100 0000000012223567899999 688999999999999999
Q ss_pred CCCCC
Q 001319 1064 PSESE 1068 (1101)
Q Consensus 1064 ~~~~~ 1068 (1101)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98876
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.3e-07 Score=105.79 Aligned_cols=215 Identities=14% Similarity=-0.001 Sum_probs=128.7
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEec---cCcEEEEecCCCceeccccceeecccccCccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 403 (1101)
+|-.|.--......+.. +.+..-.|||||+++++..+. +..|.++|+.+++... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55555422222222223 378899999999864443333 3578899998876543 22
Q ss_pred cCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEE
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~ 478 (1101)
...+.....+|||||+.|+.... +..|.++|+.+++. + .+..+.+......|+|||+.+++.+ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 24455667889999998876532 35688889888753 3 2334444344568999999744444 3333 577
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC---------CeEEEEecCCCCeeeeccCCCCceEEEEEccC
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d 549 (1101)
+.|..+.....+...... ...|+| ||+.|+..+.. ..|.+.|++++.... +... .......|+||
T Consensus 305 ~~dl~~g~~~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 305 MKKLNSGSVEQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSD 378 (419)
T ss_pred EEECCCCCeEeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCC
Confidence 777444333333222111 236766 66777655543 267777887765443 3222 23346889999
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
|+.++..... .+...+.+.++...
T Consensus 379 G~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEcc-CCcEEEEEEecCCC
Confidence 9998887643 33455777776543
No 281
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=3.3e-08 Score=96.40 Aligned_cols=192 Identities=17% Similarity=0.115 Sum_probs=134.6
Q ss_pred CCcEEEEEEec---CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 344 ~~~V~~v~fsp---dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
++.+..|.|.- +|...++-+..+|.|.++.......... ++ ++.. .+-....-.++.|++-|..
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~~ 135 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGTK 135 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCce
Confidence 34566666652 3443456667788999887654322110 00 0000 0001113567899999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeEE-eecCCcCe
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEAPV 497 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~-~~~h~~~v 497 (1101)
++++..+|.+.+-+..... +.....+++|.-..+.+.|+....+ ++.+|++|+.+..|| . .++.+.. -+-|...|
T Consensus 136 i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV 213 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV 213 (339)
T ss_pred EEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence 9999999999855554432 3333368899999999999987765 899999999999999 3 5555544 56688899
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 551 (1101)
.+|.-++. .+.++++|+.|..|++||.++......-..-.+.|..+..+|.-.
T Consensus 214 ~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 214 VSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred EEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 99987654 568999999999999999997766655555567899999988543
No 282
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=127.58 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=164.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
++.+-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4446678888888999999999999999999999998877655443 33 8899999999999 688888899999999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEec---cCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEEEEee
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
...++....+.|......+.|.. ..+++++ .++.+.+||...... -.....|.+.++++++.|....+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 88888888899998888888754 3466654 468899998644322 223367888999999999999999998
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
. +|.|++||++..++.++++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 6 89999999998888777764 33 457899999999999999998877776653
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.98 E-value=6.6e-08 Score=94.37 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=168.9
Q ss_pred cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc---CCC-EEEEEECCCeEEEEeecCCccc
Q 001319 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (1101)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp---dg~-~las~~~d~~i~vwd~~~~~~~ 441 (1101)
.|.+.++++...+...... +.......+..+.|+- +|. .++-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4567788776655433111 1222345677777764 555 5666778899999987654433
Q ss_pred ccceeeecccC---cEEEEEEecCCCceEEEEecCCceEEEEE-cCCce--eEEeecCCcCeEEEecccCCCccEEEEec
Q 001319 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1101)
Q Consensus 442 ~~~~~l~~h~~---~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 515 (1101)
..+..+..-.- ...++.|++.+. -++++-.+|.+.+-+ ..... +++++.|.-+.+-..|+.. +.+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecC
Confidence 22222222222 245778999888 588888899998666 44433 4588999999999998755 347999999
Q ss_pred cCCeEEEEecCCCC-eeee-ccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEE
Q 001319 516 IDGKIKAWLYDTMG-SRVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVV 591 (1101)
Q Consensus 516 ~d~~i~~wd~~~~~-~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 591 (1101)
.|+.+..||++... ..+. ...|...|.++.-+| ++.++++|+. |-.|++||.+ -++++..-.. ++.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 99999999999444 3332 345666788888776 5778999987 8899999988 4565544332 2468889
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEECCCCeee---EeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEE-EEEcccc
Q 001319 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFK-ILANAIG 661 (1101)
Q Consensus 592 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~-iwd~~~~ 661 (1101)
..+|.-. .++.++.-+-.+|-+++.+... .......+..-+..-.|.....+|++++ .|+.++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888543 3334444444566666553322 1111112222334444533345677765 366644 7755444
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=3.7e-07 Score=113.67 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=159.8
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC-
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~- 426 (1101)
..+++++++..++++-+..+.|++||... ..+.. + .............-..+-.....+++++++..|.++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~--i---g~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQ--I---GSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEE--E---ccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46889986555777778889999999764 33221 0 00000000000000112234688999999887776654
Q ss_pred CCeEEEEeecCCccccccee-------eecc-------cCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 427 KHLIQLYSYAGSNDLRQHSQ-------IDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~-------l~~h-------~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
++.|+++|..++.. ..+.. ..+. -..-+.++|+|++.. ++++.+.++.|++|| .++. +..+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~-v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGV-TRVFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCe-EEEEe
Confidence 56799999877542 21100 0000 112357999995543 677888889999999 4443 33332
Q ss_pred cC---------------CcCeEEEecccCCCcc-EEEEeccCCeEEEEecCCCCeeeeccC-------------------
Q 001319 492 GH---------------EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDA------------------- 536 (1101)
Q Consensus 492 ~h---------------~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------- 536 (1101)
+. -.....|++++ ++. ++++-+.++.|++||++++.......+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 21 12345678876 445 556667789999999987653321100
Q ss_pred --CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc------------CCcceEEEEEeCCCCEEEE
Q 001319 537 --PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLA 602 (1101)
Q Consensus 537 --~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~ 602 (1101)
.......++++++|+.+++-. .++.|++||..++......... .-.....++++++|+.+++
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADS----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEEC----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 011346899999998776655 3889999999887765433211 0013566899999998888
Q ss_pred EeCCCcEEEEECCCCee
Q 001319 603 VGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~~ 619 (1101)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999988765
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=8.5e-07 Score=87.41 Aligned_cols=238 Identities=15% Similarity=0.162 Sum_probs=144.1
Q ss_pred EEEecCCCCeEEEEcCCeEEEEECCCc--eEEEE---eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 809 CIALSKNDSYVMSATGGKISLFNMMTF--KVMTT---FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
.++.+.||++||+-.|..|.+-..++. .++.. .+.....=+.++||| |+.+||.+...|+|++||+....+. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 367789999999999999888765431 12222 222344578899999 9999999999999999999864432 3
Q ss_pred ec-cC------CCCeeEEEEcCC------CCEEEEEeCCCcEEEEECCCCccc---cceEEeecCCCCCCCcceEEEcCC
Q 001319 884 LK-GH------QKRITGLAFSTS------LNILVSSGADAQLCVWSIDTWEKR---KSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 884 ~~-~h------~~~V~~l~~s~d------~~~l~s~s~Dg~v~lwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
+. ++ ...|..|.|.+- ...|++-..+|.++=|-+..+... ....+. ...+.+..|.++.++|.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYPHGINSAVYHPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCCCceeEEEEcCC
Confidence 22 11 345777777543 225677778888888876543221 122222 23344479999999999
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE--EEEEeCCCc------EEEEeCCCCceeEeeC
Q 001319 948 QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL--VFATFCDGN------IGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 948 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~--l~s~~~dg~------i~vwd~~~~~~~~~~~ 1019 (1101)
.++|++++...- +++.. ... ...+++-..-.+.-+ .++..+|+. -.+|.+.+.+...+..
T Consensus 159 h~LLlVgG~~~~-----~~~~s----~a~---~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCEQN-----QDGMS----KAS---SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CCEEEEeccCCC-----CCccc----ccc---ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence 998888541100 00000 000 222333322222211 112222222 2344444433322211
Q ss_pred CCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC--CccccC
Q 001319 1020 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVS 1074 (1101)
Q Consensus 1020 ~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~--~~~~~~ 1074 (1101)
.....+..+.-|| |+.+||+...+|.|.+|++.+-. +.|+.+
T Consensus 227 ------------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 227 ------------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ------------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1222445788899 79999999999999999998877 788876
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.2e-09 Score=110.39 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=164.7
Q ss_pred EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-------ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC
Q 001319 838 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 910 (1101)
Q Consensus 838 ~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg 910 (1101)
+..+.+|...|..++--. +.+-+++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999998887666 667788999999999999873 24667889999999999999998888765 77
Q ss_pred cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC--CCEEEEE--eCCeEEEEEcCCceeeeEeccCC--CCCCCEE
Q 001319 911 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVV--HETQLAIYDASKMERIRQWTPQD--ALSAPIS 984 (1101)
Q Consensus 911 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~--~h~~~v~ 984 (1101)
-|.+||---+..+....-. ...+.+..+..-+. ...+.++ ...+|+++|...++....+..-. +...-++
T Consensus 805 giHlWDPFigr~Laq~~da----pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA----PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhcC----cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999998777655432211 11144444554443 3334443 37899999999988877776532 2256789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEE-Ee
Q 001319 985 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV-ME 1063 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~i-Wd 1063 (1101)
+++..+.|+++++|-..|+|.+.|.++|+.+..+++.. ... +.++ .| .+..|+....|.++.+ |-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdl--lqla-ap-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDL--LQLA-AP-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chh--hhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence 99999999999999999999999999999887666421 111 1222 34 3667888888999999 99
Q ss_pred CCCCCCccccCCCCCCC
Q 001319 1064 PSESEGKWGVSPPVDNG 1080 (1101)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~ 1080 (1101)
...+...+...+|.|..
T Consensus 947 aldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred hcCCeeeeccCCCCcch
Confidence 99988777777776644
No 287
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=1.8e-06 Score=97.56 Aligned_cols=220 Identities=10% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCe-----eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC
Q 001319 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS-----TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 889 (1101)
Q Consensus 815 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~ 889 (1101)
++..++...+|.+..+|..+|+.+.......... .+.... + ..++.++.+|.+..+|..+|+.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 3344443347788888888888887765421111 111222 2 2466777899999999999887654421100
Q ss_pred -------CeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 890 -------RITGLAFST--SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 890 -------~V~~l~~s~--d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
....+..+| .+..++.++.+|.+..+|..+|+.+-.... .....+.. .++..++...++.+.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------~~~~~~~~-~~~~vy~~~~~g~l~ 307 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--------GSVNDFAV-DGGRIYLVDQNDRVY 307 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--------CCccCcEE-ECCEEEEEcCCCeEE
Confidence 011111122 245677778899999999999875432211 11111222 234444446689999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
.+|..+|+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.... ...+.. .-
T Consensus 308 ald~~tG~~~W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~----------~~~~~s-~P 372 (394)
T PRK11138 308 ALDTRGGVELWSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD----------SSGFLS-EP 372 (394)
T ss_pred EEECCCCcEEEcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC----------CCccee-CC
Confidence 99999998755433211 111222222 2557888999999999999999988776521 111110 11
Q ss_pred EEecCCCCEEEEEECCCeEEEEeC
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.. .+..|+.++.||.|..++.
T Consensus 373 ~~---~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VV---ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE---ECCEEEEEeCCceEEEEeC
Confidence 11 2457888899999998875
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1e-06 Score=98.58 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=124.4
Q ss_pred cEEEEEEccCCCE-EEEEEC---CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC--ceEEEEE
Q 001319 408 SVSRVAWSPDGNY-VGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (1101)
Q Consensus 408 ~v~~~~~spdg~~-las~~~---d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d--~~v~iwd 481 (1101)
.+....|||||+. ++..+. +..|.++|+.+++... +....+.+....|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 665443 3569999998886443 3345556777889999986 34444444 4677778
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
..+.....+..+.+......|+| ||+.|+..+ ..+ .|.+.|+.+++...... .+.. ...|+|||++++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 44444556655544333456766 566555544 333 57777777666533222 1222 2489999999988765
Q ss_pred CCC-----CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---CcEEEEECCCC
Q 001319 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNV 617 (1101)
Q Consensus 559 ~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 617 (1101)
..+ +...|.+.|+.++.......+. ......|+|||+.++....+ ..+.+.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 322 1247888999888654433321 22347899999988776532 24666677543
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=2.7e-08 Score=108.41 Aligned_cols=246 Identities=15% Similarity=0.288 Sum_probs=166.9
Q ss_pred cEEEEEEecCC--ceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEE
Q 001319 346 TVISMDFHPSH--QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVG 422 (1101)
Q Consensus 346 ~V~~v~fspdg--~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~la 422 (1101)
.|-.+.|||.. .+.++ ......-.||++....--. ....+.||..+|+.+.|.|. -..+|
T Consensus 69 ~vad~qws~h~a~~~wiV-sts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIV-STSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCceeEE-ecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCccee
Confidence 57788888763 34444 4455567789987543221 11247899999999999995 46889
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v 500 (1101)
+++.|..|..||+.+... .+.........-..++|+.... .+.+.+..+.|++|| ..+.++..+++|...|+.+
T Consensus 132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 999999999999998653 3334444555678899988766 355566678899999 5667889999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEE---------Ee
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE---------WN 570 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i---------wd 570 (1101)
.|..... ..+.+.+.||+|++||.+......... ....+|..-++.|-|+-...--. .|+..+.+ |+
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n 284 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWN 284 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhc
Confidence 8865433 467899999999999998765443322 23335666667675553332111 12333433 33
Q ss_pred CCC-CeeEEEecccCCcceEEEEEe--------CC--CCEEEEEeCCCcEEEEECCC
Q 001319 571 ESE-GTIKRTYAGFRKKSNGVVQFD--------TT--QNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 571 ~~~-~~~~~~~~~~~~~~v~~~~~~--------~~--~~~l~~~~~dg~i~iwd~~~ 616 (1101)
..+ .+.+++|.||.+ .|--.-|- -+ .-.|++-+.|..+++|-+.+
T Consensus 285 ~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 VFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 333 467899999987 33222221 11 23689999999999998754
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=1.5e-06 Score=91.02 Aligned_cols=226 Identities=14% Similarity=0.143 Sum_probs=142.7
Q ss_pred CCeEEEEECCCceEEEEeeCCCCCeeEEE--EecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCC
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPASTFLA--FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~--~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 901 (1101)
+|.|..||..+|+.+....... .+.... ..+ ++..+++++.++.++.||..+|+.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5789999999999998886421 122222 232 345666778999999999999999877764 33322222 22355
Q ss_pred EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCC-
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL- 979 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h- 979 (1101)
.++.++.|+.|..+|..+|+.+-.......... ..........++..++++. ++.|..+|..+|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 667777888999999999987655322211111 1112222333366666655 899999999999998887664311
Q ss_pred CCC------EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001319 980 SAP------ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 980 ~~~------v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~ 1053 (1101)
... +..-....++ .++.++.++.+.-+|+.+++.+-.... +. .. ..... ++..|+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~----------~~--~~---~~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI----------SG--IY---SLPSV-DGGTLYVT 218 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS----------S---EC---ECEEC-CCTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC----------CC--cc---CCcee-eCCEEEEE
Confidence 111 2233333345 777777788644449999996532221 01 11 11234 56777777
Q ss_pred ECCCeEEEEeCCCCCCccc
Q 001319 1054 LTDGSVKVMEPSESEGKWG 1072 (1101)
Q Consensus 1054 ~~Dg~v~iWd~~~~~~~~~ 1072 (1101)
+.|+.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999998875
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=1.3e-06 Score=86.06 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=119.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC-------CCCCeeEEEEecCC-----CCEEEEEeCCCc
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-------PPPASTFLAFHPQD-----NNIIAIGTEDST 869 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~-----~~~la~g~~dg~ 869 (1101)
....-+.++||||+.+||.+. .|+|++||+....+. .+.. -..+|..+.|.+.. ...|.+-..+|.
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 344567899999999999997 799999999754332 3221 12456777776521 124556667888
Q ss_pred EEEEEeecc-----eEEEee--c-cCCCCeeEEEEcCCCCEEEEEeCCCc-----------EEEEECCCCccccceEEee
Q 001319 870 IHIYNVRVD-----EVKSKL--K-GHQKRITGLAFSTSLNILVSSGADAQ-----------LCVWSIDTWEKRKSVTIHI 930 (1101)
Q Consensus 870 v~iwd~~~~-----~~~~~~--~-~h~~~V~~l~~s~d~~~l~s~s~Dg~-----------v~lwd~~~~~~~~~~~~~~ 930 (1101)
++=|-+..+ +....+ . .+...|.++.++|..++|+.||.... +.-|.+-++
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------- 190 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------- 190 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC----------
Confidence 887776432 222333 2 24678999999999998888774322 223333221
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeC------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVHE------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~d------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
+|..+.+....| .+..+|.+-+.+....... ....|..|..||||+.||+...+|.|
T Consensus 191 --------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~---~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 191 --------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ---EQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred --------------CCcEEEccccCccccccccccceeeccceeeeecccc---CCCceEEEEECCCCCEEEEEEcCCeE
Confidence 122222111111 1223444443332221111 16789999999999999999999999
Q ss_pred EEEeCCCCceeEeeC
Q 001319 1005 GVFDADTLRLRCYIA 1019 (1101)
Q Consensus 1005 ~vwd~~~~~~~~~~~ 1019 (1101)
.+|++.+.++...+.
T Consensus 254 sLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWK 268 (282)
T ss_pred EEEecCcchhhcccc
Confidence 999999988877665
No 292
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=5.8e-07 Score=99.70 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=180.5
Q ss_pred cEEEEEEccCCCEEEEEE----CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 408 SVSRVAWSPDGNYVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~----~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.-+-..|+|...++|+++ ..|+|-||- ++|+.-+.. +..- .+++++|.|..- +|++|-.-|.+.+|. .
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecC
Confidence 334467999999998876 357888874 445532211 2222 356799999876 789999999999999 4
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CC--CC--ceEEEEEccCCCEE---
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--AP--GH--WCTTMLYSADGSRL--- 553 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~--~~--~v~~~~~s~d~~~l--- 553 (1101)
+.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.++..+...... .| +. ...+..+++++.-+
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l 167 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL 167 (1416)
T ss_pred CceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence 4444444457999999999987 66899999999999999887543332211 11 11 23455556664322
Q ss_pred ---EEeecCCCCCceEE-EEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 554 ---FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 554 ---~~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
++.+ | +..+- .++.+.....+... -.-.|+|..++.++.+|+|+-.|- .|+..........
T Consensus 168 aKaaVtg---D-e~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~- 232 (1416)
T KOG3617|consen 168 AKAAVTG---D-ESALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE- 232 (1416)
T ss_pred hhhhccC---c-hhhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch-
Confidence 1221 1 11111 11111000000000 113477888999999999988874 4555444443321
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEcc-cccc---ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANA-IGLR---SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
..+-|.+.-.-+++...+-.+.++-.. .|.. +...+.+.... ..|. ++.+-+.+ +.+
T Consensus 233 ---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg------------rqGg-iA~sEssG---vLr 293 (1416)
T KOG3617|consen 233 ---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG------------RQGG-IACSESSG---VLR 293 (1416)
T ss_pred ---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC------------ccCc-cccccccc---ccc
Confidence 234455544444444444333333222 2200 00000000000 0000 00000000 000
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 785 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~ 785 (1101)
. ... .+......+.+++|+..+..+.++...|.+.+|.-....+. ...+...
T Consensus 294 ~----------------~eK------yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~------g~p~~d~ 345 (1416)
T KOG3617|consen 294 K----------------SEK------YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ------GDPTIDV 345 (1416)
T ss_pred C----------------Ccc------hhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc------CCCCcce
Confidence 0 000 00224567899999999999999999999999964322111 1123445
Q ss_pred cccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc
Q 001319 786 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823 (1101)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 823 (1101)
|.+.+... ..+.|+.+.|.|--..++..+
T Consensus 346 w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 346 WTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EEecCchh---------hccceEEEEeccccchhhhhh
Confidence 55443221 445677777777554444433
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=3e-08 Score=101.36 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=111.5
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE-
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~- 424 (1101)
.++.+.++|.|+ ++|++..+....++++..... ..++++. ..... .-+++.|-.+...+..+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~---------~~v~~---~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV---------SCVPK---RPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE---------eeccc---CcceeeeeeccceEEEEe
Confidence 455666777777 667777777766777665433 1122211 01122 22334444444444444
Q ss_pred --ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe-ecCCcCeEEE
Q 001319 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSI 500 (1101)
Q Consensus 425 --~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-~~h~~~v~~v 500 (1101)
+....+.+|+...+.+. .+-||-..+++++|+||++ .++++..|..|+|-. ..-..+..| -||+.-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667776655443 3559999999999999999 899999999999987 444444444 5799999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
+..+ +..|+++|.|++|++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9864 3578999999999999999988775443
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=5.5e-06 Score=84.76 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=148.4
Q ss_pred CEeEEEecC-CCCeEEEEc-CC-eEEEEECCCceEEEEeeCCCCCe--eEEEEecCCCCEEEEEeC-----CCcEEEEEe
Q 001319 806 AVPCIALSK-NDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPAS--TFLAFHPQDNNIIAIGTE-----DSTIHIYNV 875 (1101)
Q Consensus 806 ~v~~~~~s~-dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~la~g~~-----dg~v~iwd~ 875 (1101)
..-.++.+| ++..++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|.+.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 556667776 45 48999999999988876544432 2478999 8998887643 478999999
Q ss_pred e-cceEEEeeccCCCCeeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCccccceEEeecCCCCC
Q 001319 876 R-VDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------------------DAQLCVWSIDTWEKRKSVTIHIPAGKTP 936 (1101)
Q Consensus 876 ~-~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 936 (1101)
. +-+.+.++..|.-..-.+.+.|||+.|+.+.. +-++.+.|..+|+.+....+ ......
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L--p~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL--PPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec--Cccccc
Confidence 9 66888899888777788999999988887632 23456667777776554333 222223
Q ss_pred CCcceEEEcCCCCEEEEEe-CC-----eEEEEEcCCceeeeEeccCC----CCCCCEEEEEEccCCCEEEEEe-CCCcEE
Q 001319 937 TGDTRVQFNADQVRMLVVH-ET-----QLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CDGNIG 1005 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~-d~-----~i~v~d~~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~-~dg~i~ 1005 (1101)
.+++.+++.++|..++... .+ .--+.-...++.+..+.... .-...+-+|+++++|.++++.+ ..|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 6899999999999887743 11 12233333333333333321 1257899999999999876555 778899
Q ss_pred EEeCCCCceeEeeC
Q 001319 1006 VFDADTLRLRCYIA 1019 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~ 1019 (1101)
+||..+++++....
T Consensus 243 ~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 243 VWDAATGRLLGSVP 256 (305)
T ss_pred EEECCCCCEeeccc
Confidence 99999999987665
No 295
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.80 E-value=4.1e-06 Score=94.59 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=92.7
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCc--CeE-----EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~--~v~-----~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
.++.++.++.+.-+| .+|+.+.+..-... ... .+.-.+.-++..++.++.++.+..+|.++++..+......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788888889 78887765542210 000 0000011123467788889999999999999988776554
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc----eEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
....+.... ++ .++.+. .++.+..+|..+|+.+-.+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 34 444443 37889999999999887775431100 011111 1346777888999999999
Q ss_pred CCCeeeEeec
Q 001319 615 DNVNILTSTD 624 (1101)
Q Consensus 615 ~~~~~~~~~~ 624 (1101)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=2.8e-06 Score=86.91 Aligned_cols=183 Identities=11% Similarity=0.111 Sum_probs=128.5
Q ss_pred EEEecCCCCeEEEEc------CCeEEEEECC-CceEEEEeeCCCCCeeEEEEecCCCCEEEEEe----------------
Q 001319 809 CIALSKNDSYVMSAT------GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------------- 865 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---------------- 865 (1101)
.-+||+||++|.+.- .|.|-|||.. +.+.+.++..|.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 478999999998873 3679999998 7888999998888888999999 887777663
Q ss_pred --CCCcEEEEEeecceEEEe--e--ccCCCCeeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCccccceEEeecC
Q 001319 866 --EDSTIHIYNVRVDEVKSK--L--KGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKSVTIHIPA 932 (1101)
Q Consensus 866 --~dg~v~iwd~~~~~~~~~--~--~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~v~lwd~~~~~~~~~~~~~~~~ 932 (1101)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++..-..| .|-+++-.. ...........
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 123455667788888776 4 34888999999999987666543332 134444333 11111110000
Q ss_pred -CCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 933 -GKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 933 -~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
......+-+|++++++..+++++ .+.+.+||..+++.+...... .+-.++-.+++ ++++.+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCCC
Confidence 01116788999999999998865 789999999999998887654 35566666666 6666553
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.9e-07 Score=96.34 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=173.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-..+. +. .-+..|-+.|.+++.|-||..
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---------------fV-KhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---------------FV-KHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---------------eh-hhhHHHHHHHHhhhcccccee
Confidence 3478888888877654 56899999999999854311111 00 126678999999999999999
Q ss_pred EEEEEC-CCeEEEEeecCCcccccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE--cCCcee-EEeecCCc
Q 001319 421 VGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHEA 495 (1101)
Q Consensus 421 las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd--~~~~~~-~~~~~h~~ 495 (1101)
+.+++. |..++++|+++-..+.-+ .+.--.+.+..+ .++. -..++-++.-.++.+.|+| .++... ..-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999876544211 122222222221 2222 1112445556788999999 444333 33455999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCC------CCeeee---------ccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVD---------YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~---------~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+|..+.+.+.. ..+++....|.|..|..+. ....+. +........++.|+|+|..+.+.+.
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-- 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-- 221 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--
Confidence 99999998754 5788888899999998763 111111 1222335789999999999998875
Q ss_pred CCCceEEEEeCCCCeeEEEecc--------------------------------cCCcceEEEEEeCCCCEEEEEeCCCc
Q 001319 561 DGDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 608 (1101)
+..|++++..+|+.++.+.. +.......++|...|++|+.++.=|
T Consensus 222 --DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 222 --DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred --ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 88999999999887765542 1111223366777788888776543
Q ss_pred EEEEECCCCeeeEeec
Q 001319 609 IKFWDMDNVNILTSTD 624 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~ 624 (1101)
|++.++.++.....+.
T Consensus 299 ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILG 314 (558)
T ss_pred EEEEEeecCeEEEEec
Confidence 6788888877776664
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=7.6e-08 Score=98.50 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=106.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE----EeCCeEEEEEcCC
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV----VHETQLAIYDASK 966 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~~~ 966 (1101)
+..+..+++++++|++..+....++++..... ........... ...+++.|..+.....+ |+...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc--cCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 44556677788888888887777777665443 11111111111 34455666665555554 3345666777665
Q ss_pred ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCC
Q 001319 967 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d 1046 (1101)
+... ..-+|-+.++.|++|||+++|+++..|..|+|-.+..-..+..+. +||.+.+.-+++. +
T Consensus 142 ~~~~----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc---------lGH~eFVS~isl~----~ 204 (390)
T KOG3914|consen 142 GRCE----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC---------LGHKEFVSTISLT----D 204 (390)
T ss_pred cCcc----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc---------cccHhheeeeeec----c
Confidence 4332 223558999999999999999999999999998877654443332 4577766544553 5
Q ss_pred CCEEEEEECCCeEEEEeCCCCC
Q 001319 1047 PNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++.|++||.|++|++||+.+|+
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred CceeeecCCCCcEEEEecccCC
Confidence 7789999999999999999998
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.76 E-value=1.6e-05 Score=82.37 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=133.7
Q ss_pred EEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cceEEE---
Q 001319 810 IALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKS--- 882 (1101)
Q Consensus 810 ~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~~~~~--- 882 (1101)
+++|.||+++.+.. ...|.|.|+...+.+.++.... +..+--+ ..+-+.+.|.||++.-..+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 57788888877764 4679999999999998887532 2222222 33457788889999999988 454432
Q ss_pred -eeccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC------CCCCCCcceEEEcCCCCEEEE-
Q 001319 883 -KLKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLV- 953 (1101)
Q Consensus 883 -~~~~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~- 953 (1101)
.|..-..++ ..-+++.++..++--+.+|.|+--|+............... +-.++.-..+++++....|.+
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 222222333 34455566667777888999999888876544333333221 222356677999887766665
Q ss_pred ---EeC-------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCceeEeeCC
Q 001319 954 ---VHE-------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFAT-FCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 954 ---~~d-------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.+ ..|.+||+.+++.+..+.. ..++.+|..|.|.+ +|++. ..++.+.|||..+|+++..+..
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 222 2488999999999999987 56788999999887 55544 4689999999999999998874
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=1.6e-05 Score=83.33 Aligned_cols=220 Identities=15% Similarity=0.110 Sum_probs=140.6
Q ss_pred eEEEecC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 808 PCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 808 ~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.+++|.+ ++.++.+.. .+.|..|+..+++... +.... ...+++...++.++ ++.. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEee
Confidence 3577887 666666654 7899999998876644 22222 77778873265555 4444 446666988886543332
Q ss_pred c-----CCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 886 G-----HQKRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 886 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
. .....+.+++.++|++.++.... |.|..++.. ++...... .. .....++|+||++.|.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~------~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL------GFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE------SSEEEEEEETTSSEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cc------ccccceEECCcchhee
Confidence 2 34568999999999987776544 456667766 33222111 11 4567899999999888
Q ss_pred EEe--CCeEEEEEcCCcee----eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 953 VVH--ETQLAIYDASKMER----IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 953 ~~~--d~~i~v~d~~~~~~----~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
+++ .+.|..|++..... ...+.......+....+++..+|++.++....+.|.+++.+ |+++..+...
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p----- 223 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP----- 223 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-----
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-----
Confidence 754 67888888853221 12221111112348899999999988888889999999988 8888887631
Q ss_pred cccCCCCccceEEEEEecCC-CCEEEEE
Q 001319 1027 SVLNGSQTVYPLVVAAHPLE-PNQFAIG 1053 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d-~~~l~s~ 1053 (1101)
.-.+++++|...+ ..+++|.
T Consensus 224 -------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 -------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -------SSSEEEEEEESTTSSEEEEEE
T ss_pred -------CCCEEEEEEECCCCCEEEEEe
Confidence 1256899995324 4455544
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=1.5e-07 Score=102.88 Aligned_cols=290 Identities=12% Similarity=0.164 Sum_probs=182.0
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC--CccEEEEEEccCC-
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPDG- 418 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~spdg- 418 (1101)
.-.+.+.++..+|.|+-+ |.++.-| +.+-|++..-... .+-.| .-.|-.+.|||..
T Consensus 22 ~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~pp-------------------r~l~h~tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPP-------------------RWLHHITPWQVADVQWSPHPA 80 (1081)
T ss_pred EecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCc-------------------eeeeccCcchhcceecccCCC
Confidence 345688999999999864 6666554 4556665432111 01112 2346677888743
Q ss_pred -CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCc
Q 001319 419 -NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1101)
Q Consensus 419 -~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~ 495 (1101)
.+-++......-.+|++.....-..-..+.||...|+.+-|.|.... ++++++.|..+..|| .-...+..+..-..
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecccc
Confidence 23334444445679998755443333467899999999999998877 899999999999999 33455666655555
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccC-CCEEEEeecCCCCCceEEEEeCCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
.-..|.|+.. ++. +.+.+..+.|++||.+.+.. ...+.++...|.++.|..- ...+.+++ .|++|..||.+.
T Consensus 160 ~asqVkwnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 160 AASQVKWNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFWDYSK 233 (1081)
T ss_pred cCceeeeccc-Ccc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeeecccc
Confidence 6777888765 333 44556678899999987654 4566667777888877653 23445554 399999999875
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEE--EeCCCcEEEE---------ECCC-CeeeEeeccCCCCCCCCeeEEecC-
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFW---------DMDN-VNILTSTDAEGGLPNLPRLRFSKE- 640 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v~~v~~s~~- 640 (1101)
....-......+..+..-++.|-|.-.++ --.+..+.++ +..+ .+.++++.+|.. .|....|-..
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRK 311 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcc
Confidence 43332222223335555566665443332 1112233333 3322 345666665543 4544444321
Q ss_pred ---------CCEEEEEEcCCcEEEEEcccc
Q 001319 641 ---------GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 641 ---------g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.-.|++=+.|.++++|-+.+.
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccHH
Confidence 237899999999999988654
No 302
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=6e-07 Score=99.58 Aligned_cols=107 Identities=14% Similarity=0.384 Sum_probs=82.5
Q ss_pred EEEEEecCCceEEEEEe----ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 348 ISMDFHPSHQTLLLVGS----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~----~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
+-..|+|... ++|+++ ..|.|.||- ++|+...... . .-.+++++|+|..-.||.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHHhh
Confidence 3456888877 667764 357888884 6676433211 1 124567999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|.
T Consensus 77 gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred ccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 9999999999988755332 3457999999999999999 899999999999999
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=5.6e-07 Score=88.32 Aligned_cols=247 Identities=15% Similarity=0.228 Sum_probs=161.2
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc--ccccceeeeccc------------CcEEEEEEecCCCceEEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~l~~h~------------~~V~~l~~s~d~~~~~l~s 470 (1101)
....|+++.|...|.|||+|...|.|.+|.-+... ..+-+.++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999876433 122222455664 3588899988876556777
Q ss_pred ecCCceEEEEE-cCC-------------------cee-----------------------EEe-ecCCcCeEEEecccCC
Q 001319 471 CGDDKLIKVWE-LSG-------------------RKL-----------------------FNF-EGHEAPVYSICPHHKE 506 (1101)
Q Consensus 471 ~~~d~~v~iwd-~~~-------------------~~~-----------------------~~~-~~h~~~v~~v~~~~~~ 506 (1101)
.+.|++|++|. ... .++ +.. ..|.-.|.++.+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 77899999998 221 000 001 23555677777754
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeee---ccCCCC-----ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE-
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK- 577 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~-----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~- 577 (1101)
|...+++ +.|=.|.+|+++.....+. +..+.. -|++..|+|....++.-+. ..|.|++-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4456655 4578899999876554432 222322 4788899996554443332 2788999998732210
Q ss_pred ---E----E--------ecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCC----------CCC
Q 001319 578 ---R----T--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGG----------LPN 631 (1101)
Q Consensus 578 ---~----~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 631 (1101)
. . +.+.. ..+..+.|+++|+++++-.. -+|.+||.+. ..++.+++.+.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 0 1 11111 24666899999988887654 4899999875 345565543321 011
Q ss_pred C---CeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 632 L---PRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 632 v---~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
| ..+.||.|.+.+.+|+..+...+|-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357788899999999998888887643
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=5e-05 Score=79.59 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=143.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc-cCCCEEEEEEC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVAFT 426 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~las~~~ 426 (1101)
.+++|.+....|+.+.-..+.|..|+..++.... +... ....+++. ++|++ +++..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------~~~~--~~~G~~~~~~~g~l-~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------IDLP--GPNGMAFDRPDGRL-YVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------EESS--SEEEEEEECTTSEE-EEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------EecC--CCceEEEEccCCEE-EEEEc
Confidence 3678898444477787778999999998876432 1111 27777787 66554 44555
Q ss_pred CCeEEEEeecCCcccccceeee--c-ccCcEEEEEEecCCCceEEEEecCC--------ceEEEEEcCCceeEEeecCCc
Q 001319 427 KHLIQLYSYAGSNDLRQHSQID--A-HVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWELSGRKLFNFEGHEA 495 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~--~-h~~~V~~l~~s~d~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~h~~ 495 (1101)
++ +.++|..+++... +.... . .....+.+++.++|+ +.++.... +.|..++..++... +...-.
T Consensus 60 ~~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~ 134 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPDGKVTV-VADGLG 134 (246)
T ss_dssp TC-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETTSEEEE-EEEEES
T ss_pred Cc-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCCCeEEE-EecCcc
Confidence 55 5666998875433 22331 2 345789999999999 56654433 55777775555433 333355
Q ss_pred CeEEEecccCCCccEE-EEeccCCeEEEEecCCCCe-----ee--eccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 496 PVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS-----RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~-----~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
..+.|+|++ +++.| ++-+..+.|..++++.... .. .+.........+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 678999987 55555 5677888999999865433 11 22222234789999999987777553 78899
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEe
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1101)
++|.+ |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99988 888888877644 78889994 6667766654
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=6.6e-06 Score=79.51 Aligned_cols=193 Identities=7% Similarity=-0.034 Sum_probs=128.4
Q ss_pred EEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-eE-EE-eeccCCCCeeEEE
Q 001319 819 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EV-KS-KLKGHQKRITGLA 895 (1101)
Q Consensus 819 la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-~~-~~-~~~~h~~~V~~l~ 895 (1101)
+++..|.++++++++-+..........-.+.++++++ +++++++.+....|..|.+... +. +. .....++.-.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3333366666666654333222222222378899999 9999999999999999999854 22 22 2344556678899
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE--EEEE-eCCeEEEEEcCCceeeeE
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR--MLVV-HETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~~-~d~~i~v~d~~~~~~~~~ 972 (1101)
|+.....+|++..||++.|||+..-...... ......++.+.++.+.|++.|.. |..+ +-+.+.|.|+.++.....
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 9999999999999999999999874432222 22223334489999999986653 3333 467899999999876655
Q ss_pred eccCC----CC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 973 WTPQD----AL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 973 ~~~~~----~h-~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
+.... .| ...|..-.|+.++.-+.+.+++ .+.-|++.+...
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccch-hhheeeccccce
Confidence 54432 11 2347777888888777766654 355666665443
No 306
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.59 E-value=0.0035 Score=72.64 Aligned_cols=587 Identities=12% Similarity=0.074 Sum_probs=286.0
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-- 417 (1101)
.++..+-..|+.+-++| ++.+||.-|.=.+-.+.+...... ...+ +. ++ ..-++|..++.-.+
T Consensus 302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs-y~~i---------le--t~-~NLgPI~Dm~Vvd~d~ 366 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS-YVVI---------LE--TF-VNLGPIVDMCVVDLDR 366 (1096)
T ss_pred ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc-hhhh---------hh--hc-ccccceeeEEEEeccc
Confidence 34555667777788888 457888877666666655433210 0000 00 01 13347777776543
Q ss_pred --CCEEEEEE---CCCeEEEEeecCCcccccceeeecccCcEEEEE--EecCCCceEEEEecCCceEEEEEcCCcee-EE
Q 001319 418 --GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKL-FN 489 (1101)
Q Consensus 418 --g~~las~~---~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~~~l~s~~~d~~v~iwd~~~~~~-~~ 489 (1101)
+..+++|+ .||++++..-.-+-...-...+.| -..++.+. +.+.-.. +++.+-.+. -++...+++.. ..
T Consensus 367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~e-Trvl~i~~e~ee~~ 443 (1096)
T KOG1897|consen 367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISE-TRVLNISEEVEETE 443 (1096)
T ss_pred cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEeccc-eEEEEEccceEEec
Confidence 24566654 488999876443221111113445 44577777 5443333 333333222 23444334321 11
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
..+-......+..+.- +++.|+-.. ...||+++-. .....+..+.. ++....+.+...++.++. ++.+...
T Consensus 444 ~~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~ 514 (1096)
T KOG1897|consen 444 DPGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYL 514 (1096)
T ss_pred cccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEE
Confidence 2222222333332222 122222222 2356666533 22233333333 333334444445555542 5667667
Q ss_pred eCCCCeeEEEecccCCcceEEEEEeCCC------CEEEEEeCCCcEE-EEECCCCeeeEeeccC--CCCCCCCeeEEecC
Q 001319 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIK-FWDMDNVNILTSTDAE--GGLPNLPRLRFSKE 640 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~ 640 (1101)
++..+.+...........+.|+.++|-| +.++.|..+..+. +.-..+...+...... .-...|.-..+-.|
T Consensus 515 ~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 515 EIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred EeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 7766664333333333468888888742 2566666444433 3333444433332221 11223444555556
Q ss_pred CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
..+|.++..||.+.-+.+....-.....+. ......|+.--.|+..++..+...+.... .++ .
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk--~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~-------------viY--~ 657 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKK--VTLGTQPISLRTFSSKSRTAVFALSDRPT-------------VIY--S 657 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccc--cccCCCCcEEEEEeeCCceEEEEeCCCCE-------------EEE--e
Confidence 889999999999887765544222211111 11112333333444443333222221110 000 0
Q ss_pred eCCCeEEEEcCCCCCCcccEEE-EEee-cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 721 DSGQCRLVTMPESTDTSSKVVR-LLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~-~~~s-~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
..++.....+ .-..+.. ..|+ +...-.++....+.+++..++.-.. ..+.+ +
T Consensus 658 ~n~kLv~spl-----s~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk--------------l~irt-------v 711 (1096)
T KOG1897|consen 658 SNGKLVYSPL-----SLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK--------------LHIRT-------V 711 (1096)
T ss_pred cCCcEEEecc-----chHHhhhhcccccccCCceEEEecCCceEEEEecchhh--------------cceee-------e
Confidence 0000000000 0000000 0111 1112233334445566554432110 00000 1
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc------------C---CeEEEEECCCceEEEEeeCCC-C---CeeEEEEecCCCC
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT------------G---GKISLFNMMTFKVMTTFMSPP-P---ASTFLAFHPQDNN 859 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~------------d---g~i~vwd~~~~~~~~~~~~~~-~---~i~~l~~s~~~~~ 859 (1101)
........+++.+....+++.+ . ..++++|-.+.+.....+-.. . .|.++.|..+.+.
T Consensus 712 ---pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t 788 (1096)
T KOG1897|consen 712 ---PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNT 788 (1096)
T ss_pred ---cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCce
Confidence 1233445556655333333321 1 127788888777665443211 2 2455568874378
Q ss_pred EEEEEe----------CCCcEEEEEeecceEEEeeccC--CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 860 IIAIGT----------EDSTIHIYNVRVDEVKSKLKGH--QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 860 ~la~g~----------~dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
++++|+ ..|.|.||.+..++.+.....+ .+.+.++..- +|++||. -...|++|+..+++.+...
T Consensus 789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e- 864 (1096)
T KOG1897|consen 789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIE- 864 (1096)
T ss_pred EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhh-
Confidence 888886 3588999998885444443222 3455555433 4666654 4567999999886433322
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEE--EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLA--IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~--v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
..+. ..+..+...-.|..+++++ -+.+. .|+-..|..+..- .+.+....+++.+-.+..++ .+..+|.+
T Consensus 865 ----~~~~-~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA--rD~~p~Wmtaveil~~d~yl-gae~~gNl 936 (1096)
T KOG1897|consen 865 ----CNIS-NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA--RDYNPNWMTAVEILDDDTYL-GAENSGNL 936 (1096)
T ss_pred ----hccc-CCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee--hhhCccceeeEEEecCceEE-eecccccE
Confidence 2222 6788888899999999987 45544 4444444444332 34458889999988666554 45567888
Q ss_pred EEEeCCC
Q 001319 1005 GVFDADT 1011 (1101)
Q Consensus 1005 ~vwd~~~ 1011 (1101)
.+-..++
T Consensus 937 f~v~~d~ 943 (1096)
T KOG1897|consen 937 FTVRKDS 943 (1096)
T ss_pred EEEEecC
Confidence 7765553
No 307
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.59 E-value=1.5e-05 Score=77.19 Aligned_cols=201 Identities=16% Similarity=0.111 Sum_probs=135.7
Q ss_pred CeEEEEc-CCeEEEEECCCceEE-EEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEE
Q 001319 817 SYVMSAT-GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 894 (1101)
Q Consensus 817 ~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 894 (1101)
.+||.|+ .|...+|...+.+.. .....|...|+-+.=--+...-+..++.|.++++.++.-+.....+....-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4666665 799999998865543 33333444333221111022345677889999999887654433332122238899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEe
Q 001319 895 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 895 ~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~ 973 (1101)
++++|++++++.++...|.+|.+......... .........-....|+.....+|++ .||++.|||+.........
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 99999999999999999999999874432222 1222222556678899988888885 5999999999876554332
Q ss_pred cc--CCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 974 TP--QDALSAPISCAVYSCNSQ--LVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 974 ~~--~~~h~~~v~~v~~s~dg~--~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.. ...|.+.++.+.||+-|- +|+..-.-+.+.|-|++++.....+..
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 21 123699999999998775 455666678899999999987777664
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.59 E-value=1.6e-06 Score=85.16 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=86.1
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCc--e-EEEEeeCCC-----CCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTF--K-VMTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~--~-~~~~~~~~~-----~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
|...+.++.|..|.+.++++++=+|.+|+++-- . .+..++.|. .-|++..|+|.....+...+..|.|++-|
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 888899999999999999999999999988632 1 233344443 34889999997778888899999999999
Q ss_pred eecceE------EE----------eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 875 VRVDEV------KS----------KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 875 ~~~~~~------~~----------~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+....+ +. -+.+-...|..+.|+++|+++++-+. -+|++||+...
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 974311 11 11223356788888888888877654 46888888763
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=0.00028 Score=68.35 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=91.8
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 588 (1101)
.+++.|+..+.+..-|..++...++...... +.+-+.- -|.+++.|.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~R-iE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVR-IECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCce-eeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677777777777777777776665443322 3222221 5677888886 78899999999988777765543 22
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
......+++..+.+|+.|+..+..|..+...+...+..+.. ..+-+..|-...|..+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 23556788999999999999999999999998887665542 23334455333444444445443
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=3.7e-06 Score=80.92 Aligned_cols=95 Identities=22% Similarity=0.339 Sum_probs=72.6
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCCeeEEEEcCC-CCE
Q 001319 825 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTS-LNI 902 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d-~~~ 902 (1101)
+..+.|+++..+....-......|++++-+|....++++|+.||.+-+||...... ...+..|..+|..+-|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34555665443332222222344999999997778899999999999999987744 3456899999999999985 568
Q ss_pred EEEEeCCCcEEEEECCC
Q 001319 903 LVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 903 l~s~s~Dg~v~lwd~~~ 919 (1101)
|++++.||.+.-||-.+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=9e-06 Score=83.35 Aligned_cols=248 Identities=13% Similarity=0.132 Sum_probs=147.8
Q ss_pred ccccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78889999999999999976665 45566 78999999999876 8999999999999
Q ss_pred EE--cCCceeEEeec--CCcCeEEEecccC----CCccEEEEeccCCeEEEEecCCCCeee--eccC-CCCceEEEEEcc
Q 001319 480 WE--LSGRKLFNFEG--HEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDA-PGHWCTTMLYSA 548 (1101)
Q Consensus 480 wd--~~~~~~~~~~~--h~~~v~~v~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~-~~~~v~~~~~s~ 548 (1101)
|| .+...+..+.+ ...+|..++..+. +.|.+++..+.+ +..|++.-..... .... ..+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33334444433 2334544443211 122344444332 4456654332222 1222 234556666666
Q ss_pred CCCEEEEeecCCCCCceEE----EEeCCCCeeEEEec-ccCCc---c---eEEEEEeCCCCEEEE-EeCCCcEEEEECCC
Q 001319 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GFRKK---S---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~-~~~~~---~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1101)
-.+.++........-..++ --|-.+|..+..-+ ++.+. . -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566665544211111111 12223333322111 11010 0 111222345566665 55778899999999
Q ss_pred CeeeEeeccCCCCCCCCeeEEec-CC-CEEEEEEcCCcEEEEEcc
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSK-EG-NLLAVTTADNGFKILANA 659 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~-~g-~~l~~~~~d~~i~iwd~~ 659 (1101)
++.++++.... +|.++.... +| .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999988753 566665543 33 3555444 5678887654
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=0.00037 Score=82.18 Aligned_cols=242 Identities=11% Similarity=0.080 Sum_probs=143.5
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
.+.|.++.|-.++..++.+..+|.|.+-|.++.... ....-...|.+++|+||++ +++-.+.++++.+-+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEecccc
Confidence 468999999999999999999999999998886432 2334567899999999999 5665555667765443222
Q ss_pred eeEEeec-----CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 486 KLFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 486 ~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
++..-.- ..+....+-|-... .-+.|+. |....-+................-++++|--||+++++.....
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE---TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred chhccccccccccccccceecccccc---eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 2211110 11122223332211 1111111 1111111100000000001122345799999999999854432
Q ss_pred C-CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe---CCCcEEEEECCC---CeeeEeeccCCCCCCCC
Q 001319 561 D-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN---VNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 561 ~-~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~ 633 (1101)
. +...|++||.+ |.+..+-... ...-.+++|-|.|..+++.. .|+.|.+|..+. |+.....+ .....|.
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p--~de~~ve 293 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP--LDEKEVE 293 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc--ccccchh
Confidence 2 23789999987 4433322222 22456699999999888853 566899998653 22222222 2233489
Q ss_pred eeEEecCCCEEEE---EEcCCcEEEEEcccc
Q 001319 634 RLRFSKEGNLLAV---TTADNGFKILANAIG 661 (1101)
Q Consensus 634 ~v~~s~~g~~l~~---~~~d~~i~iwd~~~~ 661 (1101)
.++|+.++..|++ ......|++|-+.+-
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCe
Confidence 9999999999998 444455999987654
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.54 E-value=2e-05 Score=82.45 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=138.6
Q ss_pred CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccC
Q 001319 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~ 505 (1101)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+.++.. .+.+.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE---
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee---
Confidence 6889999999888765331 21111222222 233455 466778899999999 79998877764 222211111
Q ss_pred CCccEEEEeccCCeEEEEecCCCCeeeec-cCCC---CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 506 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
.++..++.++.++.++.+|..+++..... .... .....+....++..++.+.. ++.|..+|.++|+.+..+.
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12346677778889999999999998873 3221 11223333334777777764 7889999999999988887
Q ss_pred ccCCcc---------eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 582 ~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
...... ...-....++ .++.++.++.+..+|..+++.+.... ... +.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG---IYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC---ccC-CceeeCCEEEEEeCCCE
Confidence 643211 1111222234 78888888864444999999765433 211 222 24567888888889999
Q ss_pred EEEEEcccccc
Q 001319 653 FKILANAIGLR 663 (1101)
Q Consensus 653 i~iwd~~~~~~ 663 (1101)
+..||..++..
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999998843
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.54 E-value=3.7e-05 Score=79.72 Aligned_cols=288 Identities=10% Similarity=0.094 Sum_probs=158.2
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec------CCCCCceEEEEeCCCCeeEEEecccCC------
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~~~~~~~~~~~~------ 585 (1101)
+++.++|.++++.+-.+.. +..-.+.++||++.+++... .++..-.|.+||..+-.....+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4677888777665443332 22345778999999887653 122345699999999887775543322
Q ss_pred cceEEEEEeCCCCEEEEE--eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccc
Q 001319 586 KSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
......+++.|++++++. +--..|.|.|+..++.+..+...+ +..+--+. .+.+.+.+.||.+.-..+....+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE-TTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC-CCceEEEecCCceEEEEECCCCC
Confidence 112337889999998884 456689999999999998887653 12222222 24677888999998888874422
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
..+... -.|.++...+ +..-
T Consensus 170 ~~~~~t-------------~~F~~~~dp~-----------------------------------------------f~~~ 189 (342)
T PF06433_consen 170 EAQKST-------------KVFDPDDDPL-----------------------------------------------FEHP 189 (342)
T ss_dssp EEEEEE-------------EESSTTTS-B------------------------------------------------S--
T ss_pred EeEeec-------------cccCCCCccc-----------------------------------------------cccc
Confidence 221110 1222222111 1112
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA- 822 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 822 (1101)
++...+..++..+-+|.|.--++....... ..-|...+........ ..+.-.-+++++....|.+-
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEe
Confidence 223333334444444554444433221100 0111111100000000 01112235565544333322
Q ss_pred c---CC-------eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceEEEeecc
Q 001319 823 T---GG-------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 823 ~---dg-------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
. +| .|.++|+.+++.+.++.. ..++.+++.+.++..+|.+.+ .++.+.+||..+|+.++++.+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 1 11 399999999999999875 346889999996666776554 579999999999999988764
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=1.9e-06 Score=82.79 Aligned_cols=207 Identities=14% Similarity=0.220 Sum_probs=127.7
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.|+.+.|+-+- .|+++..++.+.......+.+.. .|.-..... +.+++..|.++-.+-+.+--+..++++.
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecC
Confidence 47778887764 56888888888877776665543 122111111 1223445555555555555678899999
Q ss_pred CCCeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEecCCce------EEEEEcC--CceeEEeecCCcC
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKL------IKVWELS--GRKLFNFEGHEAP 496 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d~~------v~iwd~~--~~~~~~~~~h~~~ 496 (1101)
.||.+.+++.+.- ++...... .|.+ --+.+....+. .+.+ +.=|+ .++|+.. +..+.... ....
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s-~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~ 181 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILS-GGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDA 181 (319)
T ss_pred CCceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEec-CCcceEeeccceeeeccccccccccccc-cccc
Confidence 9999999998762 22111111 1222 12223333444 2333 22333 3345411 11111111 2234
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCC
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
|.+++-+|..+ +.+++|+.||.+-+||.+...... .+..|...+..+-|+| ++..|++++. +|.++.||..+
T Consensus 182 v~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88999888754 688999999999999998875443 4567888899999998 6778999885 99999999874
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=0.00032 Score=67.95 Aligned_cols=116 Identities=8% Similarity=0.087 Sum_probs=81.7
Q ss_pred EecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEE
Q 001319 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1101)
Q Consensus 352 fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~ 431 (1101)
.-||.+++++.|+..+.+.--|..+|+..-.. . -..+|-+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~------------------i--lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA------------------I--LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeeh------------------h--hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 34556778889999999999999998876421 1 12233332222 578899999999999
Q ss_pred EEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 432 vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
+.+.++|+....+..+. .-=......+++. ++..|+.|++.+.-| .+..++...+..
T Consensus 77 fl~~~tGs~~w~f~~~~---~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE---TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred EEEecchhheeeeeehh---hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccC
Confidence 99999997665332221 1112234556788 899999999999999 888888876643
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=1.8e-06 Score=97.17 Aligned_cols=179 Identities=15% Similarity=0.225 Sum_probs=135.2
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 893 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 893 (1101)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566665 778999999998888777655555666665 7799999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC--CCEEEEEeCCeEEEE
Q 001319 894 LAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIY 962 (1101)
Q Consensus 894 l~~s~d~~~l~s~s~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~d~~i~v~ 962 (1101)
+.. .|+.|+++|. |..|+|||+..-+.+....+. ....-+.|.|. .+.++++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-------cCchhhhhcccccceEEEEecccceeec
Confidence 766 5889999875 556899999986655443332 23345677775 333444678999998
Q ss_pred EcCCcee----eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 963 DASKMER----IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 963 d~~~~~~----~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
|..+... +..+.+. ...+..+.+|++|..++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence 8443221 2222221 55699999999999999999999999997
No 318
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.4e-06 Score=88.39 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------CCHHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1101)
+.-+.|+|..|+..+||.+||..|-++|.+. .++..++++++.|+...|+.-.+.=...-.. ....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK-~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK-EESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccchhhhHH
Confidence 4457899999999999999999999999985 1278899999999999998877653211111 123388999
Q ss_pred HHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 001319 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (1101)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~ 125 (1101)
+.|.|+||+..+++.+|+.+.++.+.|....+.++++....++.++...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999888889999999999886443
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.50 E-value=2.1e-05 Score=88.17 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=120.9
Q ss_pred EEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC----cEEEEEeecceEEEe
Q 001319 810 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSK 883 (1101)
Q Consensus 810 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~v~iwd~~~~~~~~~ 883 (1101)
+-+++||+.+...+ .+.+.+.|.++.+...++.-. +....+++++ +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 44577888765444 577999999998887776653 3557789999 888888776322 232322222111111
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC----C-ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT----W-EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E 956 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~----~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d 956 (1101)
+.- ..+ -++.++|++... .++.|.+.|..+ + +... .++.+ .....+.++|||+++++++ +
T Consensus 276 fni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~----yIPVG---KsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR----YVPVP---KNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE----EEECC---CCccceEECCCCCEEEEeCCCC
Confidence 110 000 133457876665 357799999887 2 2222 22222 5667899999999999964 8
Q ss_pred CeEEEEEcCCcee------------eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 957 TQLAIYDASKMER------------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 957 ~~i~v~d~~~~~~------------~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
..+.|+|+.+.+. +.+... .......+|.++|....|-.-|..|..||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999998663 344433 33445678999998888888999999999987
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=0.0001 Score=86.65 Aligned_cols=238 Identities=8% Similarity=0.130 Sum_probs=141.4
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
...|.++.|..++..++.+...|.|.+-|..+..... .. .-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------------------vg------~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------------------VG------NVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--------------------ee------eccCceEEEeecCCC
Confidence 3689999999999999999999998876533221110 00 256779999999999
Q ss_pred CeEEEEcCCeEEEEECCCceEEEEeeCC-----CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCC
Q 001319 817 SYVMSATGGKISLFNMMTFKVMTTFMSP-----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKR 890 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~ 890 (1101)
++++..+.+..-++...+..++..-..+ .+....+-|-. ....+ -|+ .|.....+....+. .....-| +.
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~-~~ 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RGS-EGRQAARQKIEKEKALEQIEQD-DH 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ecc-hhhhcccccccccccccchhhc-cC
Confidence 9999998655445555555544332221 11122233322 11111 111 11111111111100 0111112 22
Q ss_pred eeEEEEcCCCCEEEEEe----CC-CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE----eCCeEEE
Q 001319 891 ITGLAFSTSLNILVSSG----AD-AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAI 961 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s----~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~~i~v 961 (1101)
=+.+.|--||+++|+.. .+ +.|+|||-+ |....... ....--.+++|-|.|..+++- +|+.|.+
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEE
Confidence 35699999999998832 23 789999988 43322211 111445679999999999982 4678999
Q ss_pred EEcCCce---eeeEeccCCCCCCCEEEEEEccCCCEEEE---EeCCCcEEEEeCCCCce
Q 001319 962 YDASKME---RIRQWTPQDALSAPISCAVYSCNSQLVFA---TFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 962 ~d~~~~~---~~~~~~~~~~h~~~v~~v~~s~dg~~l~s---~~~dg~i~vwd~~~~~~ 1014 (1101)
|.-+... ....+... ..+|..++|+.++..|++ ......|++|-..+...
T Consensus 271 fErNGL~hg~f~l~~p~d---e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 271 FERNGLRHGEFVLPFPLD---EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred EecCCccccccccCCccc---ccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 9866433 22222221 455999999999999987 44455599999988643
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.49 E-value=3.8e-05 Score=85.01 Aligned_cols=265 Identities=15% Similarity=0.228 Sum_probs=145.9
Q ss_pred ecCCceEEEEE--------eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 353 spdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
||||+++|..- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999776532 234578899998876543 22225678899999999999988
Q ss_pred ECCCeEEEEeecCCcccccceeeec-------c---------cCcEEEEEEecCCCceEEEEecCCceEE----------
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCGDDKLIK---------- 478 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~-------h---------~~~V~~l~~s~d~~~~~l~s~~~d~~v~---------- 478 (1101)
. ++.|.+++..+++..+. +..| - -+.-..+-|||||+++.++.. ++..|.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~-d~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF-DEREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE-E-TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE-CCcCCceEEeeccCCc
Confidence 5 56799999887754332 1112 0 112356889999996322222 222222
Q ss_pred -------------------------EEE-cCCceeE-E-e---ecCCcCeEEEecccCCCccEEEEe--ccC---CeEEE
Q 001319 479 -------------------------VWE-LSGRKLF-N-F---EGHEAPVYSICPHHKENIQFIFST--AID---GKIKA 522 (1101)
Q Consensus 479 -------------------------iwd-~~~~~~~-~-~---~~h~~~v~~v~~~~~~~~~~l~s~--~~d---~~i~~ 522 (1101)
|+| .+++... . . ..-...+..+.|.+ ++..++.. ..+ ..+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 233 2221110 0 0 11222355556655 33423222 222 23555
Q ss_pred EecCCCCeeeeccC-CCCce---EEEEEc-cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce-EEEEEeCC
Q 001319 523 WLYDTMGSRVDYDA-PGHWC---TTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTT 596 (1101)
Q Consensus 523 wd~~~~~~~~~~~~-~~~~v---~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~ 596 (1101)
.|..++........ ...+| ....+. +++..++..+. .+|-..|.+++...+.......|. - .| ..+.++++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~-~-~V~~i~~~d~~ 291 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGD-W-EVTSILGWDED 291 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SS-S--EEEEEEEECT
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCc-e-eecccceEcCC
Confidence 67666554433221 22222 355554 78887777765 667788888898888755333332 2 34 45888998
Q ss_pred CCEEEE-EeC----CCcEEEEECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 597 QNHFLA-VGE----DSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 597 ~~~l~~-~~~----dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
++.++. +.. ...|+.-++. .+.. ..+...... -..+.|||+|++++....
T Consensus 292 ~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 292 NNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 887765 443 3357777777 4444 444433321 148999999999886554
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=4.5e-07 Score=90.53 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=122.2
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
+.++||-+-.-.-++.+.+..|-|-|+.+|.... |. ....|.++.|...+..+..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3446654321111333466788899999886432 22 56789999999999999999999
Q ss_pred CeEEEEeecCCccc--ccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCce---eEEeecCCcCeEEE
Q 001319 428 HLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSI 500 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~---~~~~~~h~~~v~~v 500 (1101)
|.|.++|+..+..- ... .---|...|+++.... +++ +|++.+.+|+|++|| .--++ +..+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999865210 011 1225889999998877 566 788999999999999 54455 89999997766666
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
-++-.+....+++++.|...|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55555566789999999999999999888777665543
No 323
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5.9e-07 Score=62.47 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=37.1
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=2.1e-07 Score=103.67 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=145.2
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC--cE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--QL 912 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v 912 (1101)
.+...+|..|...-+|++|+- +.++|++|+-.|.|++|++.+|.......+|..+|+.+.-+.||..+.+.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 889999999999999999999999999999999999999999998777665443 47
Q ss_pred EEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeE-eccCCCCCCCEEEEEEcc
Q 001319 913 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQ-WTPQDALSAPISCAVYSC 990 (1101)
Q Consensus 913 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~-~~~~~~h~~~v~~v~~s~ 990 (1101)
.+|++.+--. ..|......++.|+.....-+.|. .....+||+.++..... +....+....-.++.|||
T Consensus 1170 aLW~~~s~~~---------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTGG---------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhccccccC---------ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 8999876111 112225667788887755444443 46789999999988776 333333344458899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 991 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 991 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.++++ +|| .+||+...+.++++..... + ..=.|+|+ +..++.-+ -|||+.|-+
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~------------~-~~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFDQFTD------------Y-GGGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHHHhhhhhhee------------c-ccccccCC-CceEEeec-----hhhhhHHHH
Confidence 999887 455 5799999888877763221 1 12247774 55444433 367776655
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=4.9e-05 Score=85.35 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=91.0
Q ss_pred cCCCCeEEEEcCCeEEEEECCC-----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceE------
Q 001319 813 SKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEV------ 880 (1101)
Q Consensus 813 s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~------ 880 (1101)
.+||++... .+++|.+.|..+ .+.+..+.. ......+.++| ||+++++++ .+++|.|.|+.+.+.
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 346765554 467899999887 345555543 55678899999 777665554 589999999987542
Q ss_pred ------EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC----------CccccceEEeecCCCCCCCcceEEE
Q 001319 881 ------KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT----------WEKRKSVTIHIPAGKTPTGDTRVQF 944 (1101)
Q Consensus 881 ------~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~ 944 (1101)
..+..- .......+|.++|+...|..-|..|..|++.. ...+....++...+|. .....=.-
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~-~~~~g~t~ 439 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN-HASMGETK 439 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee-eecCCCcC
Confidence 333332 22345688999999889999999999999987 2223333333333332 11122234
Q ss_pred cCCCCEEEEE
Q 001319 945 NADQVRMLVV 954 (1101)
Q Consensus 945 s~d~~~l~~~ 954 (1101)
.|||++|++.
T Consensus 440 ~~dgk~l~~~ 449 (635)
T PRK02888 440 EADGKWLVSL 449 (635)
T ss_pred CCCCCEEEEc
Confidence 7899999984
No 326
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.41 E-value=1e-06 Score=83.28 Aligned_cols=134 Identities=22% Similarity=0.217 Sum_probs=97.9
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001319 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1101)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1101)
...++++|++|+++.|++.++...+......+ .+.|.|++|+|+|++..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56899999999999999999987433322223 38999999999999999999999999999998774445678888888
Q ss_pred hhcccCccc--cccccccCCchHHHHHHHHHHHhhcccCcccccccCCCCCC-hHHHHHHHHHHHHHH
Q 001319 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1101)
Q Consensus 118 ~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1101)
+|...+... ......+-+ ...|+.|.+.+.+.+-...- +| ...|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888766554 222222222 36778888888776544221 33 356888888776544
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.6e-06 Score=91.95 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=136.3
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~ 924 (1101)
...++|++++ +++++-|+.+|.|++++.... . .....|+.. ..+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3467888885 479999999999999997643 2 333345544 5679999999999999999999877665
Q ss_pred ceEEeecCCCCCCCcceEEEcCC-----CCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
...++ .++.+++++|| .+.+++|+...+.++.-.-.........+.+ .++|.++.|- |.++|=++
T Consensus 108 ~~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~-eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 108 QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEG-EGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred eEecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecC-ccceEEEEec--CcEEEEec
Confidence 55554 68899999998 5667776654488876543222222222211 8899999995 88888888
Q ss_pred CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1000 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1000 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.+| |+|||..+++.+..+...... .....++-.+.|.+ ...|+. |+..+|+|..+..
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~------~R~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQS------VRPELFPPHLHWQD--EDRLVI-GWGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCC------CCcccCCCceEecC--CCeEEE-ecCCeEEEEEEec
Confidence 666 999999999998888754421 12234455788887 345555 4667889988873
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.00026 Score=75.12 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---CC-cEEEEEeec-ceEEEeeccCC--CCeeEEEEc
Q 001319 825 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DS-TIHIYNVRV-DEVKSKLKGHQ--KRITGLAFS 897 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg-~v~iwd~~~-~~~~~~~~~h~--~~V~~l~~s 897 (1101)
..|.-.|+.+|+....+.. ...+..+.|||.+..+|+.+-+ +. .-+||-+.+ +.....+..|. ..+..=-|.
T Consensus 168 ~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 3466667888877666653 5667889999977777777653 22 236777764 34444444333 234455689
Q ss_pred CCCCEEEEEe-----CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCC--------------
Q 001319 898 TSLNILVSSG-----ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHET-------------- 957 (1101)
Q Consensus 898 ~d~~~l~s~s-----~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~-------------- 957 (1101)
|||..+.--+ .+..|.-+|+.+++.... ... .....+..++||++++. |+|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEM------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-------SEEEEEE-TTSSEEEEEE-----------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEE--EeC------CceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 9998766532 244677788888764322 221 23456777899999887 4432
Q ss_pred --eEEEEEcCCceeeeEecc------CCCCC-CCEEEEEEccCCCEEE-EEeCCCcEEEEeCC
Q 001319 958 --QLAIYDASKMERIRQWTP------QDALS-APISCAVYSCNSQLVF-ATFCDGNIGVFDAD 1010 (1101)
Q Consensus 958 --~i~v~d~~~~~~~~~~~~------~~~h~-~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~ 1010 (1101)
.|++++...+........ ..++. ..=-.+.|||||++|+ ++...|...||-++
T Consensus 319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 466778876664322110 00000 0124689999999876 56678887777543
No 329
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.1e-06 Score=87.74 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=149.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec--c-eEEEeeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV--D-EVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSID 918 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~--~-~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~ 918 (1101)
.|...|+.+..+ -.+++.+++.||.++.|.-.. + +.+..+..|.+.|.+++.+.|+..+.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 366777777666 467999999999999997543 1 445667789999999999999999999887 9999999998
Q ss_pred CCccccceEEeecCCCCCCCcceEEEcCC-CC-EEEEE--eCCeEEEEEcCCce-eeeEeccCCCCCCCEEEEEEccCCC
Q 001319 919 TWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QV-RMLVV--HETQLAIYDASKME-RIRQWTPQDALSAPISCAVYSCNSQ 993 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~-~l~~~--~d~~i~v~d~~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~ 993 (1101)
+........+..+.+ .+ ....++. -. .++++ .++.+.|+|-.... ....+.. -|..+|.++.+.+-+.
T Consensus 85 n~DminmiKL~~lPg----~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--lH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG----FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--LHFSPVKKIRYNQAGD 157 (558)
T ss_pred ccchhhhcccccCCC----ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc--cccCceEEEEeecccc
Confidence 855443332222111 11 1222222 11 34443 47899999976544 3333333 3489999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC------CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 994 LVFATFCDGNIGVFDADT------LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 994 ~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
..++....|.|.-|..+. .++...+.....+..- ......+.++.|+| ++..+.+-+.|..|+++++.++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f---~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF---PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcc---cccccCccceEEcc-ccCcccccCcccEEEEEEeccc
Confidence 999999999999999883 1121111111111111 23334567899999 7999999999999999999998
Q ss_pred C
Q 001319 1068 E 1068 (1101)
Q Consensus 1068 ~ 1068 (1101)
+
T Consensus 234 k 234 (558)
T KOG0882|consen 234 K 234 (558)
T ss_pred h
Confidence 8
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=8.7e-05 Score=82.23 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=165.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|...|.--+++..++| ++.|+.-|.+.+|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4556777777888886 58999999999999887765431 1344566788889999999999
Q ss_pred EEECCCeEEEEeecCCccccccee---eecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc-----eeEEeecCC
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~---l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~h~ 494 (1101)
.|+..|.|.|+-+..+........ -..|...|++++|++|+. .+++|...|.|..-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999887543222111 124778999999999999 7999999999988773331 123333445
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc--eEEEEEccC----CCEEEEeecCCCCCceEEE
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW--CTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--v~~~~~s~d----~~~l~~~~~~~~~~~~i~i 568 (1101)
+.|..+... ++ +|+.++.-+.+ +++.+..+....-...... -...+|-|. ..-.+.|+ ..-.++
T Consensus 171 s~IVQlD~~---q~-~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QS-YLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cc-eehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 667666643 22 33333333333 2333322211111111111 223444443 33344443 334677
Q ss_pred EeCC-CCeeEEEeccc-------------CC----------cceEEEE----EeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 569 WNES-EGTIKRTYAGF-------------RK----------KSNGVVQ----FDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 569 wd~~-~~~~~~~~~~~-------------~~----------~~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
|..+ .|+.+++..-. .. ..-..+. +.-.+.++++-++-| |+|+|.++...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8655 24444332110 00 0000011 111223455555444 889998876655
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 665 (1101)
.-..... .|.. .+..|+-|++-..|+.+++..+.+..+.+
T Consensus 320 l~se~~~---DI~d--Vs~~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 320 LWSEGGH---DILD--VSHCGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred EeecCCC---ceeE--EeecCceEEEEecCCceeEEEeehhHHHH
Confidence 4443221 3433 44467778888888888888777664443
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.2e-05 Score=80.65 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=145.0
Q ss_pred CCCCEeEEEecCCCC-eEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+...|..++|||..+ ++..++ +.+|+|.|+++..++..+..+ ..+.+++|.-++.++|..|..+|.|+|||+...+-
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 778899999999887 667777 889999999999999888887 78999999997788999999999999999985432
Q ss_pred -EEeecc--CCCCeeEEEE------cCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE
Q 001319 881 -KSKLKG--HQKRITGLAF------STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 881 -~~~~~~--h~~~V~~l~~------s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
+..+.+ ...+|..++. .+-|.+|+....+ +..|++.....-..... +-..++...++...+-.+.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl---ele~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL---ELEPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc---ccCCCcceeeeeecCccceE
Confidence 222221 2233433332 3345566655554 67787765332211111 11112455566666655555
Q ss_pred EEEe-C-------CeEEE-EEcCCceeeeEeccCC-CC----CCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeE
Q 001319 952 LVVH-E-------TQLAI-YDASKMERIRQWTPQD-AL----SAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTLRLRC 1016 (1101)
Q Consensus 952 ~~~~-d-------~~i~v-~d~~~~~~~~~~~~~~-~h----~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~~~~~~ 1016 (1101)
+++. . ..+-+ -|..+|..+....... +. -..-..+.-.+|..+|+ +|+..+.+.+||..+++...
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 5532 1 11111 1222333333222211 00 00111222245666655 56677889999999999998
Q ss_pred eeCCCCcCCCcccCCCCccceEEEEEecC-CCCEEEEEECCCeEEEEeCCC
Q 001319 1017 YIAPSTYLSPSVLNGSQTVYPLVVAAHPL-EPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~h~~~~~~~~l~~~p~-d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
++.. ..++ ..+..... .+.+|++- .|..++|+..+.
T Consensus 426 ~l~~-----------~epv--~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 426 TLAL-----------SEPV--LDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eccc-----------Ccce--eecceeecCCcchhhhe-ecceEEEEecCC
Confidence 8873 2222 23332222 34455544 566788876543
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=1.7e-06 Score=86.63 Aligned_cols=166 Identities=11% Similarity=0.132 Sum_probs=123.1
Q ss_pred EEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC----Ce
Q 001319 455 NDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GS 530 (1101)
Q Consensus 455 ~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~ 530 (1101)
+.++|+-+-.- +-++.+.+..|-+-|..+...+.|. ..+.|.++.|... +.+++.|...|.|...|++.. ..
T Consensus 215 ~~CawSlni~g-yhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 215 WSCAWSLNIMG-YHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhhccce-eeecccccceeEEEEeecccccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCc
Confidence 34477654332 2366677888889994444445555 6677888888763 469999999999999999876 33
Q ss_pred eeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCCCee---EEEecccCCcceE-EEEEeCCCCEEEEEeC
Q 001319 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNG-VVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~ 605 (1101)
......|+..|+++..-. ++.+|++.+. +|.|.+||.+--++ ++.+.||.+.... -+-+.+....++++|.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 334445777888888776 6777777654 89999999987666 9999999763322 2445677788999999
Q ss_pred CCcEEEEECCCCeeeEeeccCCC
Q 001319 606 DSQIKFWDMDNVNILTSTDAEGG 628 (1101)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~ 628 (1101)
|...+||.+..+.++.+++....
T Consensus 367 DcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred eeEEEEEecccCceeeccCCCCc
Confidence 99999999999999998876543
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=0.00035 Score=77.35 Aligned_cols=299 Identities=16% Similarity=0.151 Sum_probs=151.4
Q ss_pred eCCCCEEEEEe---------CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 594 DTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 594 ~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
|||+++++... ..+.+.++|+.+++....... ...+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 46676666632 346789999999876655443 23678999999999999887 578999987666222
Q ss_pred cccccCCCc-----------ccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 665 LRAVENPPF-----------EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 665 ~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
.-+..+... +.....-..+-++||++.+ .+...+....+.+.++..
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l-----------------------a~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL-----------------------AFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE-----------------------EEEEEE-TTS-EEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEE-----------------------EEEEECCcCCceEEeecc
Confidence 111111000 0001112345566666655 333333333333333321
Q ss_pred CCCcc---cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccC--CCCCCCCEe
Q 001319 734 TDTSS---KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA--GVNLEEAVP 808 (1101)
Q Consensus 734 ~~~~~---~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~ 808 (1101)
..... .+..+.+-.-| .......+.++++.++........ .......+.
T Consensus 134 ~~~~~~yp~~~~~~YPk~G--------------------------~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~ 187 (353)
T PF00930_consen 134 SPPDSQYPEVESIRYPKAG--------------------------DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLT 187 (353)
T ss_dssp SSSTESS-EEEEEE--BTT--------------------------S---EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred CCccccCCcccccccCCCC--------------------------CcCCceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence 11111 22222222111 111222333445555543222211 012466788
Q ss_pred EEEecCCCCeEE-EEc--C-C--eEEEEECCCceEEEEeeCC-CC---CeeEEEEe-cCCCCEEEEEeCCCcEEEEEee-
Q 001319 809 CIALSKNDSYVM-SAT--G-G--KISLFNMMTFKVMTTFMSP-PP---ASTFLAFH-PQDNNIIAIGTEDSTIHIYNVR- 876 (1101)
Q Consensus 809 ~~~~s~dg~~la-~~~--d-g--~i~vwd~~~~~~~~~~~~~-~~---~i~~l~~s-~~~~~~la~g~~dg~v~iwd~~- 876 (1101)
.+.|++|++.++ .-. + . .+.+.|..++.+....... .. .-....|. +++..+|.....||--+||-+.
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 999999999443 332 2 2 3777788777654443321 22 23355655 6466777777788865555554
Q ss_pred -cceEEEeeccCCCCeeE-EEEcCCCCEEE-EEeCC--Cc--EEEEECC-CCccccceEEeecCCCCCCCc-ceEEEcCC
Q 001319 877 -VDEVKSKLKGHQKRITG-LAFSTSLNILV-SSGAD--AQ--LCVWSID-TWEKRKSVTIHIPAGKTPTGD-TRVQFNAD 947 (1101)
Q Consensus 877 -~~~~~~~~~~h~~~V~~-l~~s~d~~~l~-s~s~D--g~--v~lwd~~-~~~~~~~~~~~~~~~~~~~~v-~~~~~s~d 947 (1101)
.+. ...+....-.|.. +.++++++.+. ++..+ +. |..-++. .++. .++. .. ... ..+.|||+
T Consensus 268 ~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT---~~--~~~~~~~~~Spd 338 (353)
T PF00930_consen 268 DGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLT---CE--DGDHYSASFSPD 338 (353)
T ss_dssp TSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESS---TT--SSTTEEEEE-TT
T ss_pred cccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Eecc---CC--CCCceEEEECCC
Confidence 444 3455545566744 67888877554 44442 23 4444555 3221 1222 11 222 58999999
Q ss_pred CCEEEEE
Q 001319 948 QVRMLVV 954 (1101)
Q Consensus 948 ~~~l~~~ 954 (1101)
+++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9998863
No 334
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.00087 Score=77.57 Aligned_cols=183 Identities=18% Similarity=0.204 Sum_probs=110.5
Q ss_pred CCeEEEEECCCceEEEEeeCCCC--------------------Ce-eEEEEecCCCCEEEEEeCCC--------------
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPP--------------------AS-TFLAFHPQDNNIIAIGTEDS-------------- 868 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~--------------------~i-~~l~~s~~~~~~la~g~~dg-------------- 868 (1101)
+|.+..+|..+|+.+..+..... .+ ...++.+ .+.++++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCC
Confidence 46677777777777666543211 01 1345554 456777777665
Q ss_pred ----cEEEEEeecceEEEeecc--CCC----CeeEEEEc----CCCC---EEEEEeCCCcEEEEECCCCccccceEEeec
Q 001319 869 ----TIHIYNVRVDEVKSKLKG--HQK----RITGLAFS----TSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP 931 (1101)
Q Consensus 869 ----~v~iwd~~~~~~~~~~~~--h~~----~V~~l~~s----~d~~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~ 931 (1101)
.|.-+|..+|+.+-.++. |.. ......+. -++. .++.++.+|.+...|..+|+.+-.....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 799999999998876542 210 00001111 2333 5778889999999999999876544332
Q ss_pred CCCCCCCcceEEEcCCCCEEEE------------------EeCCeEEEEEcCCceeeeEeccCCCC-C----CCE--EEE
Q 001319 932 AGKTPTGDTRVQFNADQVRMLV------------------VHETQLAIYDASKMERIRQWTPQDAL-S----API--SCA 986 (1101)
Q Consensus 932 ~~~~~~~v~~~~~s~d~~~l~~------------------~~d~~i~v~d~~~~~~~~~~~~~~~h-~----~~v--~~v 986 (1101)
...++.+| +...+. ..++.+.-+|..+|+.+-........ . .+. ..+
T Consensus 331 -------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 331 -------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred -------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 01122333 211111 12567888888888877666543100 0 111 112
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 987 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 987 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
. -.+..|++++.||.|+.+|.++|+.+-+..
T Consensus 403 ~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 403 A--TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred E--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 2 246789999999999999999999988876
No 335
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.27 E-value=0.02 Score=66.69 Aligned_cols=620 Identities=11% Similarity=0.101 Sum_probs=290.9
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecC-CCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~ 426 (1101)
..-...++|.++ ..|..+|.+...-+. +++......+++ ..-|...-..|+..-++| .|.+|+.
T Consensus 261 ~~~~v~~~~~~y-Ll~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~lFvGS~ 325 (1096)
T KOG1897|consen 261 CYGRVDLQGSRY-LLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VLFVGSR 325 (1096)
T ss_pred EcccccCCccEE-EEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eEEEecc
Confidence 333456677654 467788887766655 454433211111 133445556666666555 6677877
Q ss_pred CCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCC---CceEEEEec---CCceEEEEE--cCCce--eEEeec
Q 001319 427 KHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCG---DDKLIKVWE--LSGRK--LFNFEG 492 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~---~~~~l~s~~---~d~~v~iwd--~~~~~--~~~~~~ 492 (1101)
-|.=.+-.+.+.... ..+.++ ..-++|.+++.-... +. -++||+ .||++++.. ..=.. ...+.|
T Consensus 326 ~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G 403 (1096)
T KOG1897|consen 326 FGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG 403 (1096)
T ss_pred CCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC
Confidence 665555555443222 100111 234578888775543 22 355543 788999987 22222 234444
Q ss_pred CCcCeEEEe--cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEc-cCCCEEEEeecCCCCCceEEEE
Q 001319 493 HEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 493 h~~~v~~v~--~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
-..++.+. +.+..|. +|+.+-.+. -++..+...-......+-......+..| -.|..++-.. ...|+++
T Consensus 404 -ikg~w~lk~~v~~~~d~-ylvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ 475 (1096)
T KOG1897|consen 404 -IKGMWSLKSMVDENYDN-YLVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLV 475 (1096)
T ss_pred -ccceeEeeccccccCCc-EEEEEeccc-eEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEE
Confidence 23355555 4444454 444333222 2333332221111111111111122221 1233333222 3346666
Q ss_pred eCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC------CE
Q 001319 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG------NL 643 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g------~~ 643 (1101)
+-. .....+.... .++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-| ++
T Consensus 476 ss~--~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 476 SSA--GLRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred cch--hhhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceE
Confidence 543 2222333222 23334444455577777777777777777665 2222223333478999999842 37
Q ss_pred EEEEEcCCcEEEEEcccccccc--ccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 644 LAVTTADNGFKILANAIGLRSL--RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
+++|..+..+.+.-.-...... ..+... .....+-...+-.|..++..+...+.. +.-..+
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~---~iPRSIl~~~~e~d~~yLlvalgdG~l--------------~~fv~d 613 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGE---IIPRSILLTTFEGDIHYLLVALGDGAL--------------LYFVLD 613 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCC---ccchheeeEEeeccceEEEEEcCCceE--------------EEEEEE
Confidence 8888766655544322221111 111111 111112222333333333333222211 111111
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1101)
......-......-...++.--.|+..++.-+.+.+|.-..+|..+ +.+....+.
T Consensus 614 ~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls-- 668 (1096)
T KOG1897|consen 614 INTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLS-- 668 (1096)
T ss_pred cccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccc--
Confidence 1111110000001122334444455544444444444444444311 111111100
Q ss_pred CCCCCEe-EEEecCC--CCeEEEEcCCeEEEEECCCceE--EEEeeCCCCCeeEEEEecCCCCEEEEEeC----------
Q 001319 802 NLEEAVP-CIALSKN--DSYVMSATGGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTE---------- 866 (1101)
Q Consensus 802 ~~~~~v~-~~~~s~d--g~~la~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~---------- 866 (1101)
-..+. .+.|+.+ ...++++..+.+++.-++.-+. ++++.. ......+++.+ ...++++.+.
T Consensus 669 --~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 669 --LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE-SSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred --hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc-cceEEEEEecccccchhhcC
Confidence 00111 1122222 3467777777777776653222 233322 23455566655 3344443331
Q ss_pred -CC---cEEEEEeecceEEEeec--cC--CCCeeEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCccccceE
Q 001319 867 -DS---TIHIYNVRVDEVKSKLK--GH--QKRITGLAFSTS-LNILVSSGA----------DAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 867 -dg---~v~iwd~~~~~~~~~~~--~h--~~~V~~l~~s~d-~~~l~s~s~----------Dg~v~lwd~~~~~~~~~~~ 927 (1101)
.. .++++|-++-+.+...+ .. .-.|.++.|..| +.++++|.. .|.|.++.+..+..+....
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 11 35556655544433221 11 123555668877 678887753 4778888877733222221
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
-.... +.+ .+...-...++++-+..|++|+..+.+.++.-.. +..++..+...-.|..+++|.-=++|.+-
T Consensus 825 e~~v~----Gav--~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~---~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 825 ETVVK----GAV--YALVEFNGKLLAGINQSVRLYEWTTERELRIECN---ISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeec----cce--eehhhhCCeEEEecCcEEEEEEccccceehhhhc---ccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 11111 122 2333334456666678999999998865554433 37889999999999999999988877765
Q ss_pred eCC--CCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1008 DAD--TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1008 d~~--~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
..+ .|...-..+ . -++-+.+.+.+-. ++.++-+..+|++++-...
T Consensus 896 ~y~~~eg~f~evAr--D---------~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 896 QYKGDEGNFEEVAR--D---------YNPNWMTAVEILD--DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEeccCCceEEeeh--h---------hCccceeeEEEec--CceEEeecccccEEEEEec
Confidence 444 333433222 1 1222444555544 4556666677888776654
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=9.8e-05 Score=83.51 Aligned_cols=204 Identities=13% Similarity=0.159 Sum_probs=131.0
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC-eeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCcccc-
Q 001319 852 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRK- 924 (1101)
Q Consensus 852 ~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~~~~- 924 (1101)
+|++ ++..+|.|+.+|.|.+++- .-+.+..++++... |..+-...+..+|++.+.|+. |++|+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 7788999999999988873 34555778888777 555555555578999887764 9999997653222
Q ss_pred ceEE---ee---cCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCC--ceeeeEeccCCCCCCCEEEEEEccCCCEE
Q 001319 925 SVTI---HI---PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK--MERIRQWTPQDALSAPISCAVYSCNSQLV 995 (1101)
Q Consensus 925 ~~~~---~~---~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 995 (1101)
..++ .. ..+..+.+++.++++.+-+.+|+|- +|.|..+.-+- .+-.+....+.+ ..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-KEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-CCCceeeEEecCCcee
Confidence 1222 11 2222347889999999999999975 88888886431 111122222222 8999999999999984
Q ss_pred EEEeCCCcEEEEeCCCCce-eEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccc
Q 001319 996 FATFCDGNIGVFDADTLRL-RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWG 1072 (1101)
Q Consensus 996 ~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~ 1072 (1101)
+-......|.+|.+..... ...+. .+++...+.++++..+.+++++ +..|.+|+.+..+..|.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld------------~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD------------NNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec------------cCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeee
Confidence 4444466799999984331 22222 2334445677777323244433 35688888876553333
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.21 E-value=0.0014 Score=75.78 Aligned_cols=190 Identities=11% Similarity=0.103 Sum_probs=114.6
Q ss_pred EEEecCCceEEEEE-cCCceeEEeecCCc------CeE--EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEA------PVY--SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 468 l~s~~~d~~v~iwd-~~~~~~~~~~~h~~------~v~--~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
++.++.++.|.-.| .+|+.+..+..... .+. .+++ . ++..++.++.++.|..+|.++++.........
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 56667788999999 88888766643322 010 0111 0 22578888899999999999999988776544
Q ss_pred Cc-----e-EEEEEccCCCEEEEeecCC-----CCCceEEEEeCCCCeeEEEecccCC-------------------cce
Q 001319 539 HW-----C-TTMLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRK-------------------KSN 588 (1101)
Q Consensus 539 ~~-----v-~~~~~s~d~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~-------------------~~v 588 (1101)
.. + .+..+. + ..++.++... ..++.+..+|..+|+.+-.+..... ..+
T Consensus 141 ~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 141 QVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 31 1 112222 2 3444443211 1257899999999998877654211 001
Q ss_pred -EEEEEeCCCCEEEEEeCCC------------------cEEEEECCCCeeeEeeccCCCCC----CCCeeEEe----cCC
Q 001319 589 -GVVQFDTTQNHFLAVGEDS------------------QIKFWDMDNVNILTSTDAEGGLP----NLPRLRFS----KEG 641 (1101)
Q Consensus 589 -~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~v~~s----~~g 641 (1101)
...++.+.+..++.++.++ .|.-+|..+|+.........+.. ......+. -+|
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g 298 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG 298 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence 1245555667888887665 68889999999888775432210 00011111 123
Q ss_pred C---EEEEEEcCCcEEEEEccccc
Q 001319 642 N---LLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 642 ~---~l~~~~~d~~i~iwd~~~~~ 662 (1101)
. .+++++.+|.+...|..++.
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCc
Confidence 3 56777778888888888773
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00019 Score=81.32 Aligned_cols=202 Identities=16% Similarity=0.212 Sum_probs=137.0
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCC-eeEEEEecCCCCEEEEEeCCCc-----EEEEEeecc-----
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDST-----IHIYNVRVD----- 878 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~-----v~iwd~~~~----- 878 (1101)
++++.+..+|.|+ +|.|.+++- +.+.++.++.+... |+.+.... +..+|++.++|+. |+||++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4567888899998 899888874 44555778777777 55555544 5578888887754 899998742
Q ss_pred -eEE--Eeecc-----CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 879 -EVK--SKLKG-----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 879 -~~~--~~~~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
+++ ..+.. ...++.+++.+.+-+.+|.|-.+|.|..+.-+--..+.....-...+ ..+|+.+++..|+..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~--~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG--KEPITGLALRSDGKS 185 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC--CCCceeeEEecCCce
Confidence 233 12222 34678999999999999999999999998543322222222112222 278999999999988
Q ss_pred -EEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 951 -MLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 951 -l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
+.++.-..|.+|.+. ++. ......+.|+..+.|..|++....+++++ +..+.+|+.+.......+.
T Consensus 186 ~lFv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 555778899999998 444 22222334488999999987555355554 4569999988655444443
No 339
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.19 E-value=5.9e-06 Score=57.38 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=36.9
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
|+++.++.+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.10 E-value=0.0016 Score=71.70 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=69.7
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
-.+|+....+.-+.-...-.....|.+.+++|+...|+.|+.||+|.+||...+..... .....++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--------------ka~~~P~ 303 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--------------KAEFIPT 303 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--------------eecccce
Confidence 45777765543222111112378899999999999999999999999999987633321 1224567
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1039 VVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.++|+| ++.++++|+.-|.+.+||+.-
T Consensus 304 ~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 304 LIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 899999 799999999999999999843
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.10 E-value=0.00041 Score=77.11 Aligned_cols=282 Identities=16% Similarity=0.114 Sum_probs=158.7
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
+...|.--++...+++++.|++-|.+.+|+-..+ ........ +....+..+.+|++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~~--~~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKNE--GATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhccccc--CccceEEEEEecch
Confidence 4555666677888999999999999999874322 21111111 13455667788999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEE-----Ee-eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce----EEEee
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMT-----TF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----VKSKL 884 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~-----~~-~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~----~~~~~ 884 (1101)
..++|+|+ .|.|.++-+....... .. ..|+..|++++|++ ++..+.+|..-|+|..-.+++.. ....+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 99999888 6888888776532211 11 23678899999999 99999999999999999888721 11222
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC----CCEEEEEeCCeEE
Q 001319 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQLA 960 (1101)
Q Consensus 885 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~d~~i~ 960 (1101)
..-.+.|..+... ++..|++...-. .+.+.+.+...+. -...... ..-...+|-|. ..-.+.+..-..+
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r~--~Lc~tE~eti~QI---G~k~R~~-~~~~GACF~~g~~~~q~~~IycaRPG~R 239 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTRC--ILCQTEAETITQI---GKKPRKS-LIDFGACFFPGQCKAQKPQIYCARPGLR 239 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhhh--heeecchhHHHHh---cCCCcCC-ccccceEEeeccccCCCceEEEecCCCc
Confidence 3345677777765 344555443332 3334433221110 0000000 11233444443 2333333344467
Q ss_pred EEEcC-CceeeeEeccCCC---------------------------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 961 IYDAS-KMERIRQWTPQDA---------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 961 v~d~~-~~~~~~~~~~~~~---------------------------h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
+|..+ .|+.+.+....+. |-+-..+... .++ .+++-++-| |+|+|..+.
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~-~vLa~te~G-iyv~d~~~~ 316 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSD-RVLAWTEVG-IYVFDSNNS 316 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecc-eEEEeecce-EEEEEeccc
Confidence 77765 3554444322110 1111111111 222 344444344 999999888
Q ss_pred ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1013 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
...+.... .+.+ ..++- .++-|+.-..||.+++..+.+.+
T Consensus 317 ~v~l~se~-----------~~DI--~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 317 QVYLWSEG-----------GHDI--LDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred eEEEeecC-----------CCce--eEEee---cCceEEEEecCCceeEEEeehhH
Confidence 77776542 3333 23331 35556666677888888876655
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.09 E-value=0.007 Score=64.56 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=135.4
Q ss_pred EEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCC-ccEEEEEEccCCCEEEEEECC
Q 001319 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~las~~~d 427 (1101)
+|.+||++||..+..|| .+.+.|+.+++... |.... .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888777666 55666777776543 22221 222246778999988777667
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEec--CCCceEEEEec---C-------------------CceEEEEE-c
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCG---D-------------------DKLIKVWE-L 482 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~---~-------------------d~~v~iwd-~ 482 (1101)
..|+-.|+++.+... .+.-..+.+-...|.. |+. .++-.- . .+.|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 789999999976432 3444555555566643 444 332211 1 11233334 3
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEecc---CC-eEEEEecCCCCeee-eccC--CCCceEEEEEccCCCEEEE
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DG-KIKAWLYDTMGSRV-DYDA--PGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---d~-~i~~wd~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~~ 555 (1101)
+|+ ...+..-...+..+.|+|... .+|.-|-+ +. .-|||-+++..... .+.. ....+..=-|.|||..+..
T Consensus 177 tG~-~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGE-RKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T---EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCc-eeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 333 333333455677788887643 34444332 22 23677665543322 2211 2234555678999998876
Q ss_pred eec-CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCe
Q 001319 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (1101)
.+. .+..+..|.-+|+.+++........ ...-.-.++||+.++-=|.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 544 2333567888899888654433321 23345567888777662322 256778887766
Q ss_pred eeEeeccC-------C-CCCCCCeeEEecCCCEEEEEEc-CCcEEEEEc
Q 001319 619 ILTSTDAE-------G-GLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1101)
Q Consensus 619 ~~~~~~~~-------~-~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~ 658 (1101)
........ + ....=....|+|||+.++..+. .|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 53222110 0 0011256899999998877664 666666644
No 343
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.07 E-value=6.2e-06 Score=50.47 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001319 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1101)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1101)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00026 Score=79.67 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=121.4
Q ss_pred cccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeE
Q 001319 749 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 827 (1101)
Q Consensus 749 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i 827 (1101)
++.++.++.+|.+.+.+.+... ...+ .|... ..+|.++++++ ||+|
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~------------------------~~~~---~~s~~------~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP------------------------KTNF---DHSSS------ILEGEYVASCSDDGKV 95 (846)
T ss_pred cceeeeccccceEEEEecCCcc------------------------cccc---ccccc------ccCCceEEEecCCCcE
Confidence 4568888889999988754321 0000 02211 56899999999 8999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecC----CCCEEEEEeCCCcEEEEEeec--ceEEEeeccCCCCeeEEEEcCCCC
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRV--DEVKSKLKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~d~~ 901 (1101)
.|..+-+.+...++.- ..++.+++++|+ ..+.+++|+.-| +.++.-.- .+.-..+..-.++|.++.|. |+
T Consensus 96 ~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~ 171 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN 171 (846)
T ss_pred EEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc
Confidence 9998888777666553 567999999993 256788999888 88776431 11111345567899999996 77
Q ss_pred EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
++|-++.+| |+|||+.+++.+..................+.|.++.+ |++|-..+|+|..+.
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 888888888 99999999876654433332222224455677777665 566666778888877
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.03 E-value=0.0041 Score=71.06 Aligned_cols=250 Identities=13% Similarity=0.071 Sum_probs=136.6
Q ss_pred cEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+..+++||||++++.+-+..| .|++.|+.+|+.+.. . +.. ..-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 4557889999997765544444 699999999976542 0 111 122249999999988
Q ss_pred EEEECCC-----------eEEEEeecCCcccccceeeecccCc--EEEEEEecCCCceEEEEecC-C-ceEEEEE-cCC-
Q 001319 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGD-D-KLIKVWE-LSG- 484 (1101)
Q Consensus 422 as~~~d~-----------~i~vwd~~~~~~~~~~~~l~~h~~~--V~~l~~s~d~~~~~l~s~~~-d-~~v~iwd-~~~- 484 (1101)
+....+. .|+.|++.++..-.. ..+.+.... ...+..++|++++++.+.+. + ..+.+-| ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7765333 377777766543211 133333332 67889999999643333332 2 3577777 332
Q ss_pred ---ceeEEeecCCcCeE-EEecccCCCccEEEEec---cCCeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEEE
Q 001319 485 ---RKLFNFEGHEAPVY-SICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 485 ---~~~~~~~~h~~~v~-~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
.....+......+. .+... ++.+++... ..+.|...++..... ...+..+...+.--.+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 23444443333333 33322 223433332 235676677776653 223334444333333334556666
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE--Ee--CCCcEEEEECCCCeee
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VG--EDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 620 (1101)
.... .++...|+++++..+.............+..+...++++.+.. .+ .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 4567789999999555555555444434555555566655444 22 4567888999888754
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.00094 Score=74.60 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=121.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.........+.++|+|++++++ .||.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44455668899999999999995 5677777773322 21 1234456789999665 56666688999986
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+......+... ..+..+-. |.+|...+ ++.|.+||+.+......+... .|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 544443344321 23454432 45665554 448999999999888887755 389999999999999887
Q ss_pred CCCceEEEEeCCCC--------------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 561 DGDSFLVEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
+..+.+++.... ..+..+. ..|.+.+|..+ .++-.... .++. +-.|+........
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld 232 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD 232 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC
Confidence 446776654332 2222221 25777788765 44444444 6665 3344432222211
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.++.-+.+.+..+.+.....++.+..+.+...
T Consensus 233 ---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 ---KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred ---CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 14677788887788999999999988877644
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=8e-05 Score=81.51 Aligned_cols=84 Identities=27% Similarity=0.399 Sum_probs=68.7
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
+.+.....+.....|.|++++|+... ++.|+.||.|++||...+... +..+.-..+.+
T Consensus 248 lqrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~---------------------~~ka~~~P~~i 305 (545)
T PF11768_consen 248 LQRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTL---------------------LAKAEFIPTLI 305 (545)
T ss_pred eeEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeee---------------------eeeecccceEE
Confidence 33444566789999999999999985 578999999999998776432 22345568899
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCC
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~ 438 (1101)
+|+|+|..+++|+..|.+.+||+.-+
T Consensus 306 aWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 306 AWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99999999999999999999999754
No 348
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.97 E-value=5.5e-06 Score=63.62 Aligned_cols=52 Identities=37% Similarity=0.523 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHccCCH
Q 001319 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1101)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~ 90 (1101)
+..++++|+.|+|+.|++.+....+......+. +.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence 678999999999999999999985544333333 9999999999999998764
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.0051 Score=69.02 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=108.2
Q ss_pred EEecCCCCeEEEEcCC------------eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 810 IALSKNDSYVMSATGG------------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 810 ~~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
++.+|.|..+|...+. .|.+|+. .|+.+..+.-..+.|.++.|+. +.. |++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 4556666666665433 5899987 4666666665558999999987 544 55667899999999863
Q ss_pred ce------EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC----CCCCCcce-EEEcC
Q 001319 878 DE------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG----KTPTGDTR-VQFNA 946 (1101)
Q Consensus 878 ~~------~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~----~~~~~v~~-~~~s~ 946 (1101)
.. .+....-....+....+...| ++.-..++.+.+-+-.............+.. +....... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 32 111111122233333444455 2323334444433222211110000000000 00001111 23444
Q ss_pred CCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 947 DQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 947 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+....+. ..++.+.+.+....+. +.. .+++..+++||+|++||.-..+|.+.|...+-.+..+.+..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~----~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDS----DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccC----CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4443333 3344555444332211 111 46899999999999999999999999998877777776663
No 350
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.96 E-value=0.00016 Score=82.21 Aligned_cols=182 Identities=8% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++..+..|+....+..+|+.+++..+. ..--.+.|.-+. .+++ ++.+|...|+|.+-| .+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455677787778899999999876652 222333354444 3567 799999999999999 88899999999999
Q ss_pred CeEEEecccCCCccEEEEecc---------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCC-CEEEEeecCCCCCce
Q 001319 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~ 565 (1101)
.|..+.. .|+.|++++. |.-|+|||++....+..+..+.++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9999876 4568888875 556899999988776655554442 445566643 34555543 677
Q ss_pred EEEEeC---CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 566 LVEWNE---SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 566 i~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
..+-|. .....-..+....+..+..+.++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 888873 2221111122222224888999999999999999999999973
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.91 E-value=0.0032 Score=69.40 Aligned_cols=252 Identities=15% Similarity=0.208 Sum_probs=132.9
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceec------c------------ccceeecccccCcc------ccccc
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------S------------KPFKIWDMAACSLP------FQASI 401 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~------~------------~~~~~~d~~~~~~~------~~~~~ 401 (1101)
.|++|.|+++..- ||+|...|.|.||.+...+.-. . .+-++-|+.....+ .+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999764 5889999999999987653321 0 01223343332221 22234
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeec------ccCcEEEEEEec-----CC-CceEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~------h~~~V~~l~~s~-----d~-~~~~l~ 469 (1101)
+....++|++++.| |=.++|+|..+|.+.|.|+.+...+... .+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55568999999998 6779999999999999999876654431 1222 344688888873 22 225788
Q ss_pred EecCCceEEEEE-c-C--Ccee----EEeecCCcCeEEEecccCCCc-------------------cEEEEeccCCeEEE
Q 001319 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKENI-------------------QFIFSTAIDGKIKA 522 (1101)
Q Consensus 470 s~~~d~~v~iwd-~-~--~~~~----~~~~~h~~~v~~v~~~~~~~~-------------------~~l~s~~~d~~i~~ 522 (1101)
.|...|.+.+|. . . +.-. .....+.++|..|..-...+| .-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999998 3 2 2211 112246667666653211111 12334445788999
Q ss_pred EecCCCCeeeeccCCCCceEEEEEc-----cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC---cceEEEEEe
Q 001319 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1101)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~ 594 (1101)
+...+.+...+..........+++- ..+..|++.. .+|.++++.+..-+.+..+..... ......+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776665544222334444553 2444555554 388999999998888777665321 123335667
Q ss_pred CCCCEEEEEe
Q 001319 595 TTQNHFLAVG 604 (1101)
Q Consensus 595 ~~~~~l~~~~ 604 (1101)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555443
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00061 Score=75.83 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=114.9
Q ss_pred CCCcEEEEEEecCCceEEEEEecc---CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
-...+..-+|+|+++.+....-.. ..+.++++++++..... ...+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccCCccCCCCCC
Confidence 456788889999998754443222 35999999988754421 1233445678999999
Q ss_pred EEEEEE-CCCe--EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE--EcCCceeEEeecCC
Q 001319 420 YVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW--ELSGRKLFNFEGHE 494 (1101)
Q Consensus 420 ~las~~-~d~~--i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw--d~~~~~~~~~~~h~ 494 (1101)
+||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||++ ++++.+..|.-.|| |.+|.....+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 998764 4554 6677777766322 4333443447789999997 44455566654554 46666655554433
Q ss_pred cCeEEEecccCCCccEEEEeccC-Ce--EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 495 APVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d-~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+.-..-.|+| ||++++..+.. |. |.+.|+.++.. ..............+.++|+.+...+.
T Consensus 326 ~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 326 GGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 3333444555 67777766643 44 55566655543 222222333445678888888877653
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.89 E-value=0.036 Score=64.45 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=66.2
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCC-ceE----------EEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
..++.++.++.|.-.|..+++.+..+..... .+. .+++. +..++.+.. ++.|.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC----CCEEEEEECCCCCEE
Confidence 3666777788888888888888776553221 111 12221 234444443 788999999999988
Q ss_pred EEecccCCcceEEEEEeC--CCCEEEEEe------CCCcEEEEECCCCeeeEeecc
Q 001319 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
-.........-..+.-+| .+..++++. .+|.|+-+|.++|+.+..+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 766532110000111111 133555543 268999999999999877643
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.88 E-value=0.037 Score=64.35 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=89.5
Q ss_pred cEEEEEeecceEEEeeccCCCCee---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCccccceEE--------
Q 001319 869 TIHIYNVRVDEVKSKLKGHQKRIT---------GLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTI-------- 928 (1101)
Q Consensus 869 ~v~iwd~~~~~~~~~~~~h~~~V~---------~l~~s~d~~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~-------- 928 (1101)
+|.-.|+++|+..-.++.....+. -+.+..+|+ .++.+..+|.+.+.|-.+|+.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 677788889988876654322222 122334665 788999999999999999986421100
Q ss_pred --eecCCCC--------------------C-----CCcceEEEcCCCCEEEEE-e-------------------------
Q 001319 929 --HIPAGKT--------------------P-----TGDTRVQFNADQVRMLVV-H------------------------- 955 (1101)
Q Consensus 929 --~~~~~~~--------------------~-----~~v~~~~~s~d~~~l~~~-~------------------------- 955 (1101)
....+.. + ..-..++++|+..++.+. .
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0000000 0 001235667766655541 1
Q ss_pred --------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 956 --------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 956 --------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
-+.|.-+|+.+++..-....... ..... +.-.|.+++.++.||.++.+|.++|+.+-....
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p---~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFP---LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCC---CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 13577788888887766554211 11111 122456777888899999999999999988764
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.88 E-value=0.0026 Score=70.09 Aligned_cols=247 Identities=14% Similarity=0.169 Sum_probs=130.1
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC-CCCeee-----------ecccccccc--------CCccceeecc
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATA-----------SAVPQHWLP--------SSGLLMANDV 798 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~-~~~~~~-----------~~~~~~~~~--------~~~~~~~~~~ 798 (1101)
.|+.+.|.++...++++...|.|.+|.+..++... ...... .....+-|+ ..|......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998889999999999999998765443 110000 001111111 1122222222
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEee--C------CCCCeeEEEEec----CCC---CEEE
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM--S------PPPASTFLAFHP----QDN---NIIA 862 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~--~------~~~~i~~l~~s~----~~~---~~la 862 (1101)
. ...++|++++.| |=-++|+|. +|.+.|.|++....+..-. . ....++++.|+- +|+ -+|+
T Consensus 83 ~--~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 D--AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred e--ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 2 257899999997 666889998 8999999998777665522 2 223588888863 233 4788
Q ss_pred EEeCCCcEEEEEeec---ceEE----EeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE--E-eecC
Q 001319 863 IGTEDSTIHIYNVRV---DEVK----SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT--I-HIPA 932 (1101)
Q Consensus 863 ~g~~dg~v~iwd~~~---~~~~----~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~--~-~~~~ 932 (1101)
+|+..|.+.+|.+.- +... .....+.++|..+. ..+.++++...... + ....
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcccc
Confidence 999999999998751 1111 11112333333322 22333332111000 0 0000
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc-----cCCCEEEEEeCCCcEEEE
Q 001319 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-----CNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 933 ~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s-----~dg~~l~s~~~dg~i~vw 1007 (1101)
+ . +...+++++++..++++...+.+........ ......+.+- ..+..|++-..+|.|++|
T Consensus 222 g---~--------~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 222 G---I--------SIPGYVVVVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp T---------------EEEEEE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred C---C--------CcCcEEEEEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 0 0 0122566688999999999888776554421 2334444452 356678888899999999
Q ss_pred eCCCCceeEeeCC
Q 001319 1008 DADTLRLRCYIAP 1020 (1101)
Q Consensus 1008 d~~~~~~~~~~~~ 1020 (1101)
.+...+.+.....
T Consensus 288 SLP~Lkei~~~~l 300 (395)
T PF08596_consen 288 SLPSLKEIKSVSL 300 (395)
T ss_dssp ETTT--EEEEEE-
T ss_pred ECCCchHhhcccC
Confidence 9999999988774
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.0017 Score=72.56 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=118.7
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
......+.++|+|+.+++ ..+|...++..... .. ...+....++|.+++
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~-------------------------r~-----k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW-------------------------RN-----KAFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT-------------------------EE-----EEEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC-------------------------cc-----cccCceeEEEEecCc
Confidence 344678999999997777 66777777751100 00 023345668888877
Q ss_pred CeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEE
Q 001319 817 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 896 (1101)
++.+.-..++|.++.--+.+....+... ..+..+-. |.+|+..+.+ .|.+||+.+++.++++... +|..+.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 6555555788999632222222233221 12333322 6777776644 8999999999999998743 4899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC---------ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCc
Q 001319 897 STSLNILVSSGADAQLCVWSIDTW---------EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967 (1101)
Q Consensus 897 s~d~~~l~s~s~Dg~v~lwd~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 967 (1101)
+++|.+++-.+.+ ++.+++.... -......++.. ...|.+.+|..| .++.....+++.+--...
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~----~~~IkSg~W~~d--~fiYtT~~~lkYl~~Ge~ 225 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI----SERIKSGCWVED--CFIYTTSNHLKYLVNGET 225 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEEEETTEE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe----cceeEEEEEEcC--EEEEEcCCeEEEEEcCCc
Confidence 9999999988866 5888776543 00011111110 157888999887 444444447776333222
Q ss_pred eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 968 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
..+..+ ..++.-+.+.+....|.....|+.|..+.++.
T Consensus 226 ~~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 226 GIIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 333333 45677788888778888888999998887764
No 357
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.83 E-value=2.8e-05 Score=51.90 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001319 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1101)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1101)
-++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.82 E-value=0.0051 Score=62.70 Aligned_cols=216 Identities=13% Similarity=0.147 Sum_probs=118.4
Q ss_pred EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001319 840 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 840 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
.+.+-...+..++|.|+++.++++....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344555679999999966778888888999988886 57777766433 3668899999888888877779999999985
Q ss_pred CCccc-cce---EEeecC-CCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCC---ceeeeE-----eccCCCCCCCEE
Q 001319 919 TWEKR-KSV---TIHIPA-GKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK---MERIRQ-----WTPQDALSAPIS 984 (1101)
Q Consensus 919 ~~~~~-~~~---~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~---~~~~~~-----~~~~~~h~~~v~ 984 (1101)
..... ... .+.... .......-.++|++.+..|.++. ..-..+|.+.. ...+.. +.........+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 43221 111 111111 12225688999999877777765 44456666553 111111 110111245688
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEE
Q 001319 985 CAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 985 ~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
++++.|.. .+++.......|.++| .+|+.+..+........- ...--.+-+++|.+ +++++++ ++-+...+|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl---~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL---SKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG----SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc---ccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 99998864 5666788888999999 677777766543321000 01112355899999 5765554 466655554
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0038 Score=69.66 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=117.6
Q ss_pred eecccCcEEEEEEecCCCceEEEEecCC--ceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccE-EEEeccCCeEEE
Q 001319 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF-IFSTAIDGKIKA 522 (1101)
Q Consensus 447 l~~h~~~V~~l~~s~d~~~~~l~s~~~d--~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~~~d~~i~~ 522 (1101)
+..-...+..-+|+|+++.+..++-... ..+.++| .+++....+. ..+.-..-+|+| ||+. +++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp--DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP--DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC--CCCEEEEEECCCCCccE
Confidence 4445556788899999996433333333 3588899 5554332222 222333446666 4444 556666776555
Q ss_pred E--ecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE
Q 001319 523 W--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 523 w--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
| |+....... +....+.-..-.|+|||++++..+ +..+...|.+.+.+.+...+....... -..-.++|||+++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~SpdG~~i 340 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSPDGDKI 340 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC--CcCccCCCCCCEE
Confidence 5 555555332 333333334778999999999886 455666888888887766443333222 1256799999999
Q ss_pred EEEeC-CCc--EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 601 LAVGE-DSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 601 ~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+..+. +|. |.+.|+.++.....+.... ....-.|.++|+.+...+..
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 88763 344 6677776665444443222 23566788888877766543
No 360
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00014 Score=75.41 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC----------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1101)
.+.+..+|..|+...|..+.+..|.+|+|...+ +.++-+++..|+-.-|++.+..-...-.+..+ .+.|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s-~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS-SLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc-cHHH
Confidence 344689999999999999999999999998652 88999999999999999998774221111122 3999
Q ss_pred HHHHhHHHHHHccCCHH--HHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001319 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQLLT 120 (1101)
Q Consensus 75 ~i~~~~~lell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~~l~ 120 (1101)
.+..+.|++++..|... +|++..|..++||.......++.|-..+.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~ 242 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLL 242 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 99999999999998877 99999999999997766666666655443
No 361
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.76 E-value=1.1e-05 Score=87.69 Aligned_cols=204 Identities=13% Similarity=0.179 Sum_probs=132.6
Q ss_pred CCcEEEEEEecCCc-eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEE
Q 001319 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1101)
Q Consensus 344 ~~~V~~v~fspdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l 421 (1101)
...+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34677777765543 58899999999999887543211 1124677888999999999 77888
Q ss_pred EEEE----CCCeEEEEeecCCc--ccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCC
Q 001319 422 GVAF----TKHLIQLYSYAGSN--DLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1101)
Q Consensus 422 as~~----~d~~i~vwd~~~~~--~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~ 494 (1101)
|+|- .|..+.|||+.++- ..... .+.+ -.....+++|..|.+ ++.+|...+.++++|....+.....-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 8873 46679999998862 11111 1222 444567899998888 7889999999999994433332222233
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEe-cCCCCeeeeccCCC-----CceEEEEEccCCC-EEEEeecCCCCCceEE
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAPG-----HWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~~-----~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~ 567 (1101)
..+..+.+.|- .+.++++-. ||.|.+|| ...-+..+....+. ..+..++|+|... .+++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 34555665552 234666555 99999999 44433333222222 2488999999654 3444443 367899
Q ss_pred EEeCC
Q 001319 568 EWNES 572 (1101)
Q Consensus 568 iwd~~ 572 (1101)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 98865
No 362
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=2.4e-05 Score=85.15 Aligned_cols=254 Identities=13% Similarity=0.143 Sum_probs=154.7
Q ss_pred CCCCEeEEEecCCCC--eEEEEc-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEecCCCCEEEEEe----CCCcEEEE
Q 001319 803 LEEAVPCIALSKNDS--YVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT----EDSTIHIY 873 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~--~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~----~dg~v~iw 873 (1101)
....+.|++...+.. .+++|. +|.|.+-......- .....++....++++|.+-|..+||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 344567777665443 667776 78888877654322 2334556778999999997888888875 46689999
Q ss_pred Eeecc--eEE--Eeecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcC-C
Q 001319 874 NVRVD--EVK--SKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-D 947 (1101)
Q Consensus 874 d~~~~--~~~--~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 947 (1101)
|+.++ .+. ..|.+ -......++|-.+.+.+.+|...+.+.++|+.-...... .+. ...+..+.++| .
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svn------Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVN------TKYVQGITVDPFS 207 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhh------hhhcccceecCCC
Confidence 99876 221 22222 334566889998889999999999999999873211111 111 03567788899 8
Q ss_pred CCEEEEEeCCeEEEEEc-CCceeeeEeccCC--CCCCCEEEEEEccCCC-EEEE-EeCCCcEEEEeCCCC------ceeE
Q 001319 948 QVRMLVVHETQLAIYDA-SKMERIRQWTPQD--ALSAPISCAVYSCNSQ-LVFA-TFCDGNIGVFDADTL------RLRC 1016 (1101)
Q Consensus 948 ~~~l~~~~d~~i~v~d~-~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~-~l~s-~~~dg~i~vwd~~~~------~~~~ 1016 (1101)
+.+++...|+.|.+||. .+-+.......+. .....+..++|+|-.. .+++ .-..++|+.+|+..- +...
T Consensus 208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~ 287 (783)
T KOG1008|consen 208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSV 287 (783)
T ss_pred CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccc
Confidence 88999888999999993 3322221111111 0123489999999543 3444 445678999988642 1111
Q ss_pred eeCCCCcCCCcccCCCC-ccceEEEEEecCC-CCEEEEEECCCeEEEEeCCC
Q 001319 1017 YIAPSTYLSPSVLNGSQ-TVYPLVVAAHPLE-PNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~h~~-~~~~~~l~~~p~d-~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.+...... .+.|.. ...+-...|++.+ .+...++-..-+..-+++..
T Consensus 288 ~~~~~s~~---~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 288 FVNYESKY---PVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred eeeecccc---cccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 11111100 112333 3455677788755 34445555555566555544
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.64 E-value=0.024 Score=57.95 Aligned_cols=201 Identities=9% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCCCEeEEEecCCCCeE-EEEc-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 803 LEEAVPCIALSKNDSYV-MSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~l-a~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
....+..++|.|+...| ++.. .+.|.-++. +|+.++.+.-.. +..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 55569999999986655 4444 577888886 578887776433 4577888886 67666665568999999984321
Q ss_pred ------EEEee-----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC---CccccceEEee-c-CCCCCCCcceEE
Q 001319 880 ------VKSKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIHI-P-AGKTPTGDTRVQ 943 (1101)
Q Consensus 880 ------~~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~---~~~~~~~~~~~-~-~~~~~~~v~~~~ 943 (1101)
....+ ..+...+-.|+|.+.++.|+.+-...-..++.+.. ........... . .......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11111 13455689999999988888887776677777654 11111111100 0 111115678999
Q ss_pred EcCCCCEEEE-Ee-CCeEEEEEcCCceeeeEeccCCCC------CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 944 FNADQVRMLV-VH-ETQLAIYDASKMERIRQWTPQDAL------SAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 944 ~s~d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
++|....|.+ ++ +..|..+| .+|+.+..+....+. -...-.|+|.++|++. ..++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 9998766665 44 67788888 567766655443211 2357889999999644 45566665554
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.12 Score=58.20 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-C
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-Q 888 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~ 888 (1101)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+...++.-. .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3444555444444 55666554433211 22 246899999999 9999999999999999987666666666533 3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCce
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 968 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~ 968 (1101)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|+.-..-+
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--------------------~~~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG--------------------DSISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------------CceEEeccCceEEeccCCceEEEeCCceE
Confidence 456777776554333222 23344443221 12344445554555554458888777666
Q ss_pred eeeEec
Q 001319 969 RIRQWT 974 (1101)
Q Consensus 969 ~~~~~~ 974 (1101)
.+....
T Consensus 318 ~l~~Vp 323 (410)
T PF04841_consen 318 FLQRVP 323 (410)
T ss_pred EEEECC
Confidence 666554
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.026 Score=62.97 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=145.8
Q ss_pred EeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---CCcEEEEEeecceEE
Q 001319 807 VPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVRVDEVK 881 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg~v~iwd~~~~~~~ 881 (1101)
-..+++++++..+.... ++.|.+.|..+.+....... ......+++++ +++.+.++.. ++++.+.|..+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888555444 68899999887777666543 22677899999 6655555544 689999999998888
Q ss_pred EeeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C--
Q 001319 882 SKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-- 956 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-- 956 (1101)
.....-..+ ..++++|+|+.+..+. .++.|.+.|..+..... ...... -........+.++|+|..+.+.. +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc-cccCCCCceEEECCCCCEEEEEeccCCC
Confidence 775433344 8999999999666554 78899999977754332 110000 11114567899999999877743 2
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeEeeCC
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.+...|..++.....-..... . ....+.++|+|+++.+... .+.+.+-|..+......+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 5888999988887766222210 2 5667899999999888744 48899999999888776553
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.061 Score=60.04 Aligned_cols=242 Identities=16% Similarity=0.190 Sum_probs=156.6
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
....+++.+++..+.... .+.+...+................-..+++++.+.+..+....++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 345677888886555443 334555555422222222211133456788883444666666679999999877766655
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCe
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 958 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~ 958 (1101)
..--. ....++++++++.+..+.. ++++.+.|-.+++.... .+.+. .-..++++|+|..+.+.. ++.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~---~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGN---TPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCC---CcceEEECCCCCeEEEEecCCCe
Confidence 43222 5678999999987777655 67888888888665444 22232 227899999999888855 899
Q ss_pred EEEEEcCCceeeeEeccC--CCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeEeeCCCCcCCCcccCCCC
Q 001319 959 LAIYDASKMERIRQWTPQ--DALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1033 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 1033 (1101)
|.+.|........ -... ..-......+.+++||.++.+.... +.+.+.|..++......... ..
T Consensus 184 v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~----------~~ 252 (381)
T COG3391 184 VSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV----------GS 252 (381)
T ss_pred EEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc----------cc
Confidence 9999987766653 1110 1113445678999999977765433 68999999998877653221 12
Q ss_pred ccceEEEEEecCCCCEEEEE-ECCCeEEEEeCCCCC
Q 001319 1034 TVYPLVVAAHPLEPNQFAIG-LTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1034 ~~~~~~l~~~p~d~~~l~s~-~~Dg~v~iWd~~~~~ 1068 (1101)
. .+..+...| ++..+... +..+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 344688889 56666655 455889999988876
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.044 Score=54.65 Aligned_cols=210 Identities=16% Similarity=0.098 Sum_probs=132.1
Q ss_pred EeEEEecCCCC-eEEEEc-CCe-EEEEECCCceEEEEeeCCCCC--eeEEEEecCCCCEEEEEeCC-----CcEEEEEee
Q 001319 807 VPCIALSKNDS-YVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTED-----STIHIYNVR 876 (1101)
Q Consensus 807 v~~~~~s~dg~-~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~ 876 (1101)
...++++|--. -++.+. -|+ ..++|....+...++....+. --.=.||| ||.+|...-.| |.|-|||..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 34577887544 455555 455 788999887776665443322 12347999 89988765443 689999998
Q ss_pred cc-eEEEeeccCCCCeeEEEEcCCCCEEEEEeCC------------------CcEEEEECCCCccccceEEeecCCCCCC
Q 001319 877 VD-EVKSKLKGHQKRITGLAFSTSLNILVSSGAD------------------AQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 877 ~~-~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
.+ +.+.++..|.-....+.|.+||+.|+.+... -++.+.|..+|+.+....+.....+ -
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--l 226 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--L 226 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--c
Confidence 55 5567888888888899999999999887541 1344455555555444333211111 5
Q ss_pred CcceEEEcCCCCEEEEEe------CCeEEEEEcCCceeeeEeccCC----CCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 001319 938 GDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CDGNIGV 1006 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~-~dg~i~v 1006 (1101)
++..++..+||+.++.+. |.-.-|=....++.+..+.... .....|-+|+...+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 788899999998877642 2222222223344333333221 0134577888887777766555 5556788
Q ss_pred EeCCCCceeEeeC
Q 001319 1007 FDADTLRLRCYIA 1019 (1101)
Q Consensus 1007 wd~~~~~~~~~~~ 1019 (1101)
||..+|..+....
T Consensus 307 ~da~tG~vv~~a~ 319 (366)
T COG3490 307 WDAATGAVVSEAA 319 (366)
T ss_pred EEcCCCcEEeccc
Confidence 9999999876543
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.53 E-value=0.017 Score=67.39 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=112.9
Q ss_pred CCeeEEEEecCCCCEEEEEe------CCC--cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC--------
Q 001319 846 PASTFLAFHPQDNNIIAIGT------EDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-------- 909 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~------~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D-------- 909 (1101)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 777776655 244 4444453 22222223332 48889999999888777533
Q ss_pred ----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEE---EEcCCceeeeE-----eccCC
Q 001319 910 ----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMERIRQ-----WTPQD 977 (1101)
Q Consensus 910 ----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v---~d~~~~~~~~~-----~~~~~ 977 (1101)
+.+.+.++..++... .....+..+.|||||..++...+++|.+ -....|. ... +...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~- 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG- 494 (591)
T ss_pred cCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc-
Confidence 223333444333211 1125799999999999999977788877 5545554 222 2211
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL-RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
-...+..+.|..++.++ ++..++...+|.+.-. .....+.. ..-...++.++-++ ..++.+..+
T Consensus 495 -l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~----------~n~~~~v~~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 495 -LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS----------RNLSAPVVAVAASP---STVYVTDAR 559 (591)
T ss_pred -cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCC----------CCccCceEEEecCC---ceEEEEcCC
Confidence 13446889999999855 5555555555654422 11111111 10111234566555 245555666
Q ss_pred CeEEEEeCCCCCCccccCCCCCC
Q 001319 1057 GSVKVMEPSESEGKWGVSPPVDN 1079 (1101)
Q Consensus 1057 g~v~iWd~~~~~~~~~~~~~~~~ 1079 (1101)
|.+.+=.-.++...|.--++..+
T Consensus 560 g~~~l~~~~~~~~~W~ev~~l~g 582 (591)
T PRK13616 560 AVLQLPNSDSGDQYWREVPGLMG 582 (591)
T ss_pred ceEEecCCCCCCCCceECccccC
Confidence 64444323333466766554433
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.053 Score=57.95 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=118.5
Q ss_pred CCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEe--------------eCCCCCeeEEE--EecCCCCEEEEEeCC
Q 001319 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGTED 867 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~la~g~~d 867 (1101)
...|..+...++-+.+++-+|+.+.++++......... ......+...+ -...+...|+++. .
T Consensus 35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-K 113 (275)
T ss_pred cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-C
Confidence 33489999999888888888999999998765444311 01122344444 1122445555554 4
Q ss_pred CcEEEEEeecc-----eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC-----CCCCC
Q 001319 868 STIHIYNVRVD-----EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-----GKTPT 937 (1101)
Q Consensus 868 g~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-----~~~~~ 937 (1101)
.+|.+|.+... +..+++. -...+.+++|. ++.++.|..++ ..+.|+.++............ .....
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 58999988763 3445554 34788999998 55677776554 889999976643322111100 00001
Q ss_pred CcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEe
Q 001319 938 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1017 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1017 (1101)
....+.--+++.+|++.+ . +.+|=-..|+..+.....- ...+.++++. ..||+..+. +.|.||++.+++++..
T Consensus 190 ~~~~~~~~~~~e~Ll~~~-~-~g~fv~~~G~~~r~~~i~W--~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 190 KPLGIFQLSDNEFLLCYD-N-IGVFVNKNGEPSRKSTIQW--SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred CceEEEEeCCceEEEEec-c-eEEEEcCCCCcCcccEEEc--CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 122222233456665543 2 3333333444333111111 3455666664 457877665 5599999999999888
Q ss_pred eCC
Q 001319 1018 IAP 1020 (1101)
Q Consensus 1018 ~~~ 1020 (1101)
+..
T Consensus 263 i~~ 265 (275)
T PF00780_consen 263 IPL 265 (275)
T ss_pred EEC
Confidence 773
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.029 Score=55.89 Aligned_cols=261 Identities=13% Similarity=0.138 Sum_probs=141.4
Q ss_pred EEEEeCCCCE-EEEEeCCCc-EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC-----CcEEEEEccccc
Q 001319 590 VVQFDTTQNH-FLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIGL 662 (1101)
Q Consensus 590 ~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~ 662 (1101)
.++++|.... ++.+-.-|+ ..++|....+...++....+-.-.-.-.|||||.+|+..-.| |.|-|||...+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 3778886544 444544454 678899888777766544332223445799999999987543 789999998765
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcc--e--eccC-CCCCCceEEEEEEeCCCeEEEEcCCCCCCc
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK--V--ERSS-PVRPSPIILAEIVDSGQCRLVTMPESTDTS 737 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~--~--~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
..+-.+..+... ...+.+.+||+.++....+-... . .++. ........+.+..+........+|. ..+.
T Consensus 152 qrvgE~~t~GiG-----pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l~~ 225 (366)
T COG3490 152 QRVGEFSTHGIG-----PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SLRQ 225 (366)
T ss_pred ceecccccCCcC-----cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hhhh
Confidence 555444443332 34678899999987654422111 0 0111 1111112233334444445555553 3355
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC-CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
..|..+...+||..++.+--.|. .....+ .+.......++..+....+.. .....|-+++.+.+.
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pee~~~-------~~anYigsiA~n~~~ 291 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPEEQTA-------AFANYIGSIAANRRD 291 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCHHHHH-------HHHhhhhheeecccC
Confidence 66777777777764443322211 110000 000000011111111111111 134557788888877
Q ss_pred CeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEe
Q 001319 817 SYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 875 (1101)
Q Consensus 817 ~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~ 875 (1101)
.+++..+ .+...+||..+|..+..-... .+..++-.. .=+++.+.+|.+.+++-
T Consensus 292 glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~~---~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 292 GLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAAK---GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccceecc---CceEEecCCceEEeccc
Confidence 7777766 567999999999987654321 222333322 33555666888887743
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.48 E-value=0.012 Score=64.34 Aligned_cols=175 Identities=16% Similarity=0.183 Sum_probs=106.0
Q ss_pred CeEEEEECCCceEEEEeeCCCC-CeeEEE---EecC---CCCEEEEEeC----------CCcEEEEEeecc----eEEEe
Q 001319 825 GKISLFNMMTFKVMTTFMSPPP-ASTFLA---FHPQ---DNNIIAIGTE----------DSTIHIYNVRVD----EVKSK 883 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~-~i~~l~---~s~~---~~~~la~g~~----------dg~v~iwd~~~~----~~~~~ 883 (1101)
..|++.|..+.+.+..+.-... .+.+++ +..+ ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888888887776654332 344443 3321 1578888863 289999999984 12221
Q ss_pred e--ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-cccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeE
Q 001319 884 L--KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL 959 (1101)
Q Consensus 884 ~--~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i 959 (1101)
+ ....++|++++-- +++ |+.+. .+.|.+|++...+ ........ ...........+.++++|+ .+.+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEETTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccccEEEEEEcccCE
Confidence 1 2357889999876 344 44333 4789999999877 32222222 2223344444466888887 5777
Q ss_pred EEEEcCC-ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 960 AIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 960 ~v~d~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
.++..+. ...+..+.. +.....++++.|-+|++.++.++.+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7774432 222222221 2226679999998777899999999999999887
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.45 E-value=0.0068 Score=70.71 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=106.3
Q ss_pred CCEeEEEecCCCCeEEEEc-------CC--eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC--------
Q 001319 805 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-------- 867 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------- 867 (1101)
..+.+.++||||+.+|... ++ .|.+++.. +.......+ ...+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999887653 32 46666653 333222333 2488899999 77766666422
Q ss_pred ----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE---EECCCCccccceEEeecCCCCCCCcc
Q 001319 868 ----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV---WSIDTWEKRKSVTIHIPAGKTPTGDT 940 (1101)
Q Consensus 868 ----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~l---wd~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1101)
+.+.+.++..++... ...+.|..+.|||||.+++... +|.|.+ -....|+...........+.. ..+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC-Cccc
Confidence 233333444333322 2356799999999999988766 577777 444555422111112212111 3357
Q ss_pred eEEEcCCCCEEEEEeCC--eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 941 RVQFNADQVRMLVVHET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 941 ~~~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
.+.|..++.+++...+. .+...+++... ...+ .......++..|+-+++ .|+....+|.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCcc-cccc-CCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 89999999976554433 34444444222 2221 22122566777777753 45555666633
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.14 Score=58.41 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=127.4
Q ss_pred EeEEEecCCCCeEEEEc--CC----eEEEEECCCceEEEEe-eCCCCCeeEEEEecCCCCEEEEEeCCC-----------
Q 001319 807 VPCIALSKNDSYVMSAT--GG----KISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDS----------- 868 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~la~g~~dg----------- 868 (1101)
+....+||||+++|.+- +| .++++|+.+++.+... .. .....+.|.+ +++.++....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 44688999999998773 34 3999999999876532 22 1223499999 766665554332
Q ss_pred cEEEEEeecceE--EEeeccCCCC--eeEEEEcCCCCEEEEEeCC----CcEEEEECCCCc--cccceEEeecCCCCCCC
Q 001319 869 TIHIYNVRVDEV--KSKLKGHQKR--ITGLAFSTSLNILVSSGAD----AQLCVWSIDTWE--KRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 869 ~v~iwd~~~~~~--~~~~~~h~~~--V~~l~~s~d~~~l~s~s~D----g~v~lwd~~~~~--~~~~~~~~~~~~~~~~~ 938 (1101)
.|+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+.++..+. ......+.... ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~----~~ 278 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE----DG 278 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS----SS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC----Cc
Confidence 367777765422 2334333333 5688899999987754322 347777887751 11222222111 22
Q ss_pred cceEEEcCCCCEEEEEe----CCeEEEEEcCCcee---eeEeccCCCCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEe
Q 001319 939 DTRVQFNADQVRMLVVH----ETQLAIYDASKMER---IRQWTPQDALSAPISCAVYSCNSQLVFA-TFCDG--NIGVFD 1008 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~----d~~i~v~d~~~~~~---~~~~~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg--~i~vwd 1008 (1101)
+....-+..+.+++.+. .+.|.-.++..... ...+..+ ...+.-..+...+.+|+. ...++ .|++++
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~---~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE---DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC---CCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 22222223444444432 56788888877653 2233332 333333333344555554 44444 588899
Q ss_pred CCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEEC---CCeEEEEeCCCCC
Q 001319 1009 ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT---DGSVKVMEPSESE 1068 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~---Dg~v~iWd~~~~~ 1068 (1101)
+..+.....+... ..+.+..+...+....+.++.+. -+++..||+.+++
T Consensus 356 ~~~~~~~~~~~~p-----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 356 LDDGKESREIPLP-----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TT-TEEEEEEESS-----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCCCcEEeeecCC-----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9933333333321 11222344444433445554443 3578999999988
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.06 Score=57.18 Aligned_cols=199 Identities=15% Similarity=0.102 Sum_probs=116.4
Q ss_pred EEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec--
Q 001319 810 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-- 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-- 885 (1101)
..|.++...|...+ .+.|.-|+..+++... +.. ...+.++..-. .+..|+++ .. .+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d-~~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALID-AGGRLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeec-CCCeEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 45667777666665 6889999988664432 222 23334444433 33344333 23 37777776665532221
Q ss_pred --cC-CCCeeEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 886 --GH-QKRITGLAFSTSLNILVSSGA-----D----AQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 886 --~h-~~~V~~l~~s~d~~~l~s~s~-----D----g~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
+. ....+.+...|+|.+.++... . ..=.+|.+. .+..+.. ...+. ...+.++||||++.|.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-----~~~~~-~~~NGla~SpDg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-----LDDDL-TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-----ecCcE-EecCceEECCCCCEEE
Confidence 11 245678889999987776544 1 112455555 2222111 11111 4567899999999888
Q ss_pred EEe--CCeEEEEEcCC--ceeeeE--eccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeEeeCC
Q 001319 953 VVH--ETQLAIYDASK--MERIRQ--WTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 953 ~~~--d~~i~v~d~~~--~~~~~~--~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++ .+.|.-|++.. +..... +.....+.+..-.++...+|.+.+++..+| .|.+|+.+ |+++..+..
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 866 47888887752 211110 111111256667778888898886555554 89999999 888888774
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.048 Score=57.94 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=133.2
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
.|.|++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .| +
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g-~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG-V 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-c
Confidence 4667777677777778899999988765422 11 233445555544555555553 33 7
Q ss_pred EEEeecCCcccccceee-ecc-cCcEEEEEEecCCCceEEEEecCC------------ceEEEEEcCCceeEEeecCCcC
Q 001319 431 QLYSYAGSNDLRQHSQI-DAH-VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEAP 496 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l-~~h-~~~V~~l~~s~d~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~h~~~ 496 (1101)
.+++.+++.....+... .+. ...-+.+...|+|. +..+... |.|+..|..+..++.+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 77777665542222111 122 23567888999998 3333322 2233444456666666666667
Q ss_pred eEEEecccCCCccEEEEec-cCCeEEEEecCC-----CC--eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 497 VYSICPHHKENIQFIFSTA-IDGKIKAWLYDT-----MG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~~-----~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
-+.|+|+| |++.++.+. ..+.|.-|+++. .. .........+..-.++...+|.+-+++.. +.+.|.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 78999988 455555554 457888887762 11 11222333455667888888888764432 2248999
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEe
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1101)
|+.+ |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9998 999888887754 56666665 4456665544
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.29 E-value=0.014 Score=69.03 Aligned_cols=149 Identities=12% Similarity=0.087 Sum_probs=99.4
Q ss_pred CCCEEEEE-eCCCcEEEEEeecceEEEeeccCCCC-eeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCccccceEEe
Q 001319 857 DNNIIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFST-----SLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 857 ~~~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
+..+|+.. .....|+-.|+..|+.+..+..|... |..++-.. ....-+.|-.+..+..||..-.... ...-+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecc
Confidence 44555443 34678999999999999999988654 55544321 1223456777888999998753311 01111
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
...-......++++-+.+|...+.+.+|.|++||--..+....+.+. ..+|..|..+.||+||++.+ +..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l---G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL---GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC---CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11112225677888888888777778999999995443333333332 89999999999999988766 667888876
Q ss_pred C
Q 001319 1010 D 1010 (1101)
Q Consensus 1010 ~ 1010 (1101)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.021 Score=62.49 Aligned_cols=178 Identities=17% Similarity=0.237 Sum_probs=104.3
Q ss_pred CCeEEEEc----------C-CeEEEEECCCc-----eE--EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 816 DSYVMSAT----------G-GKISLFNMMTF-----KV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 816 g~~la~~~----------d-g~i~vwd~~~~-----~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
..++++|. . |.|.++++... +. +... ...++|++++--. +. |+++. ++.|++|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET--TE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC--CE-EEEee-cCEEEEEEccC
Confidence 46777762 1 77999999874 22 2222 2467888888763 44 44443 58899999998
Q ss_pred ce-EEEeecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe
Q 001319 878 DE-VKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 878 ~~-~~~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
.+ ....-.- ....+.++... +.+++.|.....|.++..+.... .. ........+..++++.|-+++..+++++
T Consensus 117 ~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~--~l-~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 117 SKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN--KL-ILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp TSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE---E-EEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred cccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC--EE-EEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 87 4433221 22245555554 66999999888899886554111 01 1111122235688888886666666665
Q ss_pred -CCeEEEEEcCC-------c----eeeeEeccCCCCCCCEEEE---EEcc--CCC------EEEEEeCCCcEEEE
Q 001319 956 -ETQLAIYDASK-------M----ERIRQWTPQDALSAPISCA---VYSC--NSQ------LVFATFCDGNIGVF 1007 (1101)
Q Consensus 956 -d~~i~v~d~~~-------~----~~~~~~~~~~~h~~~v~~v---~~s~--dg~------~l~s~~~dg~i~vw 1007 (1101)
+|.+.++.... + ..+..+.. ...|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l----g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHL----GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCeEEEEEECCCCcccccccccceeEEEEEC----CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 89999988762 1 12333333 5678888 5555 222 37778889998844
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.20 E-value=0.25 Score=54.56 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=61.9
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC-----------------EEE
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-----------------HFL 601 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~l~ 601 (1101)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+. +|+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 357889999998877774 35789999999999999999998775544333322211 222
Q ss_pred -EEeCCCcEEEEECCCCeeeEeeccC
Q 001319 602 -AVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 602 -~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
-+-.-|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 3567899999999999888777653
No 379
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.20 E-value=0.12 Score=55.32 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=126.2
Q ss_pred CCCCeEEEEcCCeEEEEECC-CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe---------
Q 001319 814 KNDSYVMSATGGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK--------- 883 (1101)
Q Consensus 814 ~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~--------- 883 (1101)
..++.|+.|.++.+.+++.. ......... ...|..+...+ +-+.|++-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 45778888885449999983 333333332 23499999999 555555554 59999999886443321
Q ss_pred -----eccCCCCeeEEE--EcCCCCEEEEEeCCCcEEEEECCCCcc---ccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 884 -----LKGHQKRITGLA--FSTSLNILVSSGADAQLCVWSIDTWEK---RKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 884 -----~~~h~~~V~~l~--~s~d~~~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
-......+...+ -...+...+.....+.|.+|....... .....+... ..+..++|. +..+++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEE
Confidence 011223344444 112333333344455888888776321 122222221 577888888 777888
Q ss_pred EeCCeEEEEEcCCceeeeEeccCCC---------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcC
Q 001319 954 VHETQLAIYDASKMERIRQWTPQDA---------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1024 (1101)
Q Consensus 954 ~~d~~i~v~d~~~~~~~~~~~~~~~---------h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1024 (1101)
+..+...+.|+.++.....+..... ...++..+... ++.+|++-. . +-+|=-..|+... -.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~--~-~g~fv~~~G~~~r-~~----- 223 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD--N-IGVFVNKNGEPSR-KS----- 223 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec--c-eEEEEcCCCCcCc-cc-----
Confidence 8888899999998776555533221 12344455544 456666532 2 3333333444322 00
Q ss_pred CCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1025 SPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1025 ~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.+.. .+.++++.. .+|+..+. +.|-||++.+++
T Consensus 224 --~i~W~~---~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 224 --TIQWSS---APQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred --EEEcCC---chhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 001112 234566543 25555555 559999999998
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0023 Score=70.41 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~ 923 (1101)
...+.-+.|+| .-.++|++..+|.|.+..+. .+.+..+.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34578899999 88999999999999999998 777888887777777 9999999999999999999999999998876
Q ss_pred cceEEeecCCCCCCCcceEEEc
Q 001319 924 KSVTIHIPAGKTPTGDTRVQFN 945 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~~~~s 945 (1101)
....... ...+..+.|+
T Consensus 98 ~~~~~s~-----e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSV-----ETDISKGIWD 114 (665)
T ss_pred ecccccc-----ccchheeecc
Confidence 6532111 1556677776
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.07 E-value=0.11 Score=52.74 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=116.1
Q ss_pred CCEeEEEecCCCCeEEEEc-CC--eEEEEECCCceEEEEeeCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 805 EAVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
.....+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. +.++....-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3445688877888777665 44 599999999998776654332 12234444 345555666789999999999998
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
+.++. ..+.-..|+ .|++.|+.......+.++|..+.+......
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~--------------------------------- 166 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ--------------------------------- 166 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE---------------------------------
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE---------------------------------
Confidence 88875 345667777 466667766666779999988755433221
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC---CCCccce
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN---GSQTVYP 1037 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---h~~~~~~ 1037 (1101)
|.+ .+..+ ..+.-+.+- +|...|=.-....|..-|..+|+....+....-....-.. +....-.
T Consensus 167 V~~--~g~pv----------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 167 VTD--NGRPV----------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEE--CCEEC----------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 211 11221 123334443 5665555556667888899999888877643322110000 1111223
Q ss_pred EEEEEecCCCCEEEEE
Q 001319 1038 LVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 1038 ~~l~~~p~d~~~l~s~ 1053 (1101)
.+++|.|..+++++||
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 5899999777777777
No 382
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.05 E-value=0.76 Score=50.95 Aligned_cols=288 Identities=13% Similarity=0.145 Sum_probs=159.4
Q ss_pred CcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-----CCCeEEEE
Q 001319 748 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSYVMSA 822 (1101)
Q Consensus 748 ~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~la~~ 822 (1101)
+...|++|+..|.+++|+-......+. ..++... ...+|..+..-. +...||+-
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEEe
Confidence 346788999999999997533322211 1112211 445666655422 33466666
Q ss_pred cCCeEEEEECC--Cce-------EEEEeeCCCC--CeeEEEEecC----CCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 823 TGGKISLFNMM--TFK-------VMTTFMSPPP--ASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 823 ~dg~i~vwd~~--~~~-------~~~~~~~~~~--~i~~l~~s~~----~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
.-.++.||.+. .|. .+..+..|.- ....+++-|- +..++.+-+.||++.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 67788888762 111 1222333332 2333444332 247899999999999999766554444443
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-------------------ccceEEeecCCCCCCCcceEEEcCCC
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK-------------------RKSVTIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
.--...+.|.+.-..+++++.+..|.-|....-.. .....-...-|...-.+..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22334578888888999999998888887532100 00001111122211233344444455
Q ss_pred CEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc----cCC---CEEEEEeCCCcEEEEeCCCCceeEeeCCC
Q 001319 949 VRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS----CNS---QLVFATFCDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 949 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s----~dg---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
..+++-..+.+.+.+.. |........ + -.+.....|. .++ ..++.++.++++.||.=.+...-+.+.
T Consensus 254 ~~IvvLger~Lf~l~~~-G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-- 327 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDN-GSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-- 327 (418)
T ss_pred ceEEEEecceEEEEcCC-CeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC--
Confidence 55666666677777664 443333222 1 1111111222 122 248889999999999866554444332
Q ss_pred CcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccccC
Q 001319 1022 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVS 1074 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~~ 1074 (1101)
..++.+ .++..+.-..+|++-+++|.+.+--+-|.-.....+
T Consensus 328 ----------~~PVal-~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p 369 (418)
T PF14727_consen 328 ----------HVPVAL-SVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVP 369 (418)
T ss_pred ----------CCCEEE-EecccCCCCceEEEEcCCCcEEEEEeCCCCccccCC
Confidence 333432 333333347899999999999998887755434333
No 383
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0024 Score=70.28 Aligned_cols=93 Identities=19% Similarity=0.403 Sum_probs=71.2
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEE-EEEEccCCCEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVGV 423 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~las 423 (1101)
..|.-+.|+|.-. |+|.+..+|.|.+..++ .+.+ |+ +.-|...++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEE
Confidence 4788899999877 88999999999999887 3333 32 333555565 9999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA 460 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s 460 (1101)
|-.||+|++-|+++|..+... ...-...|.++-|.
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 999999999999998766532 12234567777775
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.99 E-value=0.64 Score=49.15 Aligned_cols=151 Identities=18% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeE-EEEECCC--ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cc
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKI-SLFNMMT--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VD 878 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i-~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~ 878 (1101)
....+..+..++||++++++..|.+ .-||.-. .+.... .....|..+.|.| ++.+.+++ ..|.|+.=+.. ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 4567888999999999999997764 5677542 233322 2357899999999 77766544 78888887622 22
Q ss_pred eEEEe----eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 879 EVKSK----LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 879 ~~~~~----~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
+.-.. ...-.-.+..++|.+++...++|+. |++ +...+.|+. ..... .....+.....+.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt--W~~~~-~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT--WQKDR-VGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS---EE-G-GGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc--ceECc-cccCCCCceEEEEEcCCCceEEEC
Confidence 21111 1112234789999999877776664 433 334444431 11111 111222678899999888999999
Q ss_pred eCCeEEEE
Q 001319 955 HETQLAIY 962 (1101)
Q Consensus 955 ~d~~i~v~ 962 (1101)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 99887655
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.94 E-value=0.72 Score=48.79 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=82.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCc
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI-DTWE 921 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~-~~~~ 921 (1101)
...+.+..+..++ ++++++++..-.-..-||--...-...-..-..+|.+|.|+|++...+.+ ..|.|++=+. ...+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3456788888888 89988887654444566643211122222346789999999998776644 8888888772 2211
Q ss_pred cccceEEeecCC-CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 922 KRKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 922 ~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
. ........ ...-.+..++|.+++...+++..+.+ +...+.|+.=..-.....-......|.|.++.+-++.| .
T Consensus 220 ~---w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 220 T---WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp E---E---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred c---cccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 1 00111111 11134788999999999998887754 44555555444433222225678999998776655555 5
Q ss_pred CCcEEEE
Q 001319 1001 DGNIGVF 1007 (1101)
Q Consensus 1001 dg~i~vw 1007 (1101)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877655
No 386
>PRK10115 protease 2; Provisional
Probab=96.90 E-value=1.4 Score=53.47 Aligned_cols=241 Identities=10% Similarity=0.035 Sum_probs=120.2
Q ss_pred cEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999997655433333 688999988764321 1111 11569999999988
Q ss_pred EEEECC------CeEEEEeecCC--cccccceeeecccCcEE-EEEEecCCCceEEEEec-CCceEEEEE--c-CCceeE
Q 001319 422 GVAFTK------HLIQLYSYAGS--NDLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG-DDKLIKVWE--L-SGRKLF 488 (1101)
Q Consensus 422 as~~~d------~~i~vwd~~~~--~~~~~~~~l~~h~~~V~-~l~~s~d~~~~~l~s~~-~d~~v~iwd--~-~~~~~~ 488 (1101)
+....+ ..|..+++.++ +... .+........ .+..+.|++.+++.+.+ .++.+.+++ . ++....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l---v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL---VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE---EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 776542 36788888887 2222 2333333333 33334478753322222 345788888 2 344222
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccC-C--eEEEEecCCCCe-eeeccC-CCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGS-RVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~-~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
.+..-.+....+. +. .+.+.+....+ . .|...++..... ...+.. ....+..+.+. +++|+.... .++.
T Consensus 264 ~~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGL 337 (686)
T ss_pred EEECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCE
Confidence 2222222222222 22 12233332221 2 343344442121 222222 22367777776 445554433 2345
Q ss_pred ceEEEEeCCCCeeEEEec-ccCCcceEEEEEe--CCCC-EEEEEe---CCCcEEEEECCCCe
Q 001319 564 SFLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1101)
..+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 567777765443 33332 1111 22223344 3334 333332 45778888887764
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0025 Score=43.44 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=34.4
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
++....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778999999999999999999999999999996
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.88 E-value=0.34 Score=53.50 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEEecCCCCeEEEEcCCeEEE----EECC-----CceEEEEee----CCC-CCeeEEEEecC----------CCCEEEEE
Q 001319 809 CIALSKNDSYVMSATGGKISL----FNMM-----TFKVMTTFM----SPP-PASTFLAFHPQ----------DNNIIAIG 864 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~dg~i~v----wd~~-----~~~~~~~~~----~~~-~~i~~l~~s~~----------~~~~la~g 864 (1101)
.++.+|++.++|.+...++.+ |+.. .+....... ... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 578899999999998665433 4331 112222211 111 46777665441 46889999
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
..+|.|++|.- +|.++..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999986 566665555677788777764
No 389
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.87 E-value=0.068 Score=63.41 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=93.7
Q ss_pred CCEEEEE-ECCCeEEEEeecCCcccccceeeecccCc-EEEEEEecCCCc-----eEEEEecCCceEEEEE--cCCceeE
Q 001319 418 GNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKL-----LCVVTCGDDKLIKVWE--LSGRKLF 488 (1101)
Q Consensus 418 g~~las~-~~d~~i~vwd~~~~~~~~~~~~l~~h~~~-V~~l~~s~d~~~-----~~l~s~~~d~~v~iwd--~~~~~~~ 488 (1101)
.++|+.- .....|+-.|++.|+.+. ++..|... |.. |.|+.+. --.+.|-.+..+..|| ..|..+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~---eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE---EWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE---EeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 3444433 345679999999999877 56666543 544 4443220 0245666788999999 5554332
Q ss_pred Eeec----CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 489 NFEG----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 489 ~~~~----h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
.-.. ......|++-+. +| +||+|+.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~--~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-----~t 639 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTE--DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-----KT 639 (794)
T ss_pred eccccccccCCCceEEEecC--Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-----cc
Confidence 2112 233466666543 43 899999999999998544344445556678999999999999998876 66
Q ss_pred eEEEEeC
Q 001319 565 FLVEWNE 571 (1101)
Q Consensus 565 ~i~iwd~ 571 (1101)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7888875
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.77 E-value=2.1 Score=51.81 Aligned_cols=203 Identities=10% Similarity=0.079 Sum_probs=116.2
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccC------cEEEEEEec----------------CCCceEEEEecCCc
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG------AVNDLAFAY----------------PNKLLCVVTCGDDK 475 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~------~V~~l~~s~----------------d~~~~~l~s~~~d~ 475 (1101)
+..|..++.++.|.-.|.++|+.+-+... ..... ..+.+++-. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 45666667777788888888775432211 00000 012233321 233 467788899
Q ss_pred eEEEEE-cCCceeEEeecCCcCeE-------------EEecccCCCccEEEEecc----------CCeEEEEecCCCCee
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKAWLYDTMGSR 531 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~-------------~v~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~ 531 (1101)
.+.-.| .+|+.+..+.. .+.|. .+.-.|-=.+..++.++. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999 89998876632 22221 001001001235555542 688999999999988
Q ss_pred eeccCC---------CC--------ce-EEEEEccCCCEEEEeecC--------------CCCCceEEEEeCCCCeeEEE
Q 001319 532 VDYDAP---------GH--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 532 ~~~~~~---------~~--------~v-~~~~~s~d~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~ 579 (1101)
..+... .. .+ ..+++.++...++....+ ..-.+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 765421 00 11 234555555555443210 11245677889999998877
Q ss_pred ecc-cCCc-------ceEEEEEeC-CCC---EEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 580 YAG-FRKK-------SNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 580 ~~~-~~~~-------~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
++. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 2210 111122332 453 78889999999999999999887654
No 391
>PHA02713 hypothetical protein; Provisional
Probab=96.76 E-value=0.059 Score=63.42 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=101.4
Q ss_pred CCCEEEEEeCC------CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccccc
Q 001319 857 DNNIIAIGTED------STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKS 925 (1101)
Q Consensus 857 ~~~~la~g~~d------g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~lwd~~~~~~~~~ 925 (1101)
++.+.++|+.+ ..+..||..+++-...-.-....-...+..-+|+..+.||.++ ++..||..+.+....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 66788888754 3477888776642211111111111122233678888888764 488899887543322
Q ss_pred eEEeecCCCCCCCcceEEEcCCCCEEEEEe-C-----------------------CeEEEEEcCCceeeeEeccCCCCCC
Q 001319 926 VTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E-----------------------TQLAIYDASKMERIRQWTPQDALSA 981 (1101)
Q Consensus 926 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d-----------------------~~i~v~d~~~~~~~~~~~~~~~h~~ 981 (1101)
..+.... .....+ .-+|+..++|+ + ..+..||..+.+-...-.... .
T Consensus 383 ~~mp~~r----~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 383 PDMPIAL----SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CCCCccc----ccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 1111111 111122 23566666553 2 247778877655432222211 1
Q ss_pred CEEEEEEccCCCEEEEEeCC------CcEEEEeCCC-CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001319 982 PISCAVYSCNSQLVFATFCD------GNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 982 ~v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
....-+..-+|+..+.|+.+ ..+..||..+ .+...... .+.. .... +++-. ++.+.++||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~----m~~~-----r~~~--~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT----TESR-----LSAL--HTILH--DNTIMMLHC 520 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc----cCcc-----cccc--eeEEE--CCEEEEEee
Confidence 11111223367777777654 2467899887 44332111 1101 1111 11111 689999999
Q ss_pred CCC--eEEEEeCCCCCCccccCCCCC
Q 001319 1055 TDG--SVKVMEPSESEGKWGVSPPVD 1078 (1101)
Q Consensus 1055 ~Dg--~v~iWd~~~~~~~~~~~~~~~ 1078 (1101)
.|| .+-.||+.+.+ |..-.|.-
T Consensus 521 ~~~~~~~e~yd~~~~~--W~~~~~~~ 544 (557)
T PHA02713 521 YESYMLQDTFNVYTYE--WNHICHQH 544 (557)
T ss_pred ecceeehhhcCccccc--ccchhhhc
Confidence 999 77788887776 76655543
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.66 E-value=1 Score=49.12 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeee-EeeccCCCC-CCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 597 QNHFLAVGEDSQIKFWDMDNVNIL-TSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
|.++++.-..+.|....+..+..+ .....-... ..+..+++.|||.+.++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345555555677887777644332 222211222 2678999999999888888888764
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.61 E-value=0.22 Score=58.45 Aligned_cols=237 Identities=14% Similarity=0.144 Sum_probs=128.6
Q ss_pred cCCCCeEEEEc-C------CeEEEEECCCceEEEEeeCC-CCCeeEEEEecCCCCEEEEEeCC-C-----cEEEEEeecc
Q 001319 813 SKNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTED-S-----TIHIYNVRVD 878 (1101)
Q Consensus 813 s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~d-g-----~v~iwd~~~~ 878 (1101)
+..+.+++.|+ . ..+..||..+++-.....-. ...-.++++. ++.+.++|+.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455666665 3 34888998876443322221 2223445554 56888999988 3 5777887765
Q ss_pred eEEE--eeccCCCCeeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE
Q 001319 879 EVKS--KLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 879 ~~~~--~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
+=.. .+.......... .-+|...|+||.||. |..||..+.+......... ..-..-...-+|+..
T Consensus 360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~------~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT------RRSGHGVAVLGGKLY 431 (571)
T ss_pred ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc------ceeeeEEEEECCEEE
Confidence 4222 221111111111 226788899999964 7778887755432221111 111122233356655
Q ss_pred EEEe-C------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceeEeeC
Q 001319 952 LVVH-E------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-----IGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 952 ~~~~-d------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~-----i~vwd~~~~~~~~~~~ 1019 (1101)
++|+ + ..+..||..+..-...-..... ..... + -.-++++.+.|+.|+. |..||..+.+....-.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 5543 2 4688899887665433332210 11111 2 2336788888887763 7778888766544311
Q ss_pred CCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCe-----EEEEeCCCCCCccccCCCC
Q 001319 1020 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGVSPPV 1077 (1101)
Q Consensus 1020 ~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~-----v~iWd~~~~~~~~~~~~~~ 1077 (1101)
. . . ......+ .+ .++.+.+.|+.||. |-.||..+.+ |....+.
T Consensus 509 m-~---~----~rs~~g~-~~----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~~ 556 (571)
T KOG4441|consen 509 M-T---S----PRSAVGV-VV----LGGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTEP 556 (571)
T ss_pred C-c---c----ccccccE-EE----ECCEEEEEecccCccccceeEEcCCCCCc--eeeCCCc
Confidence 0 0 0 0111111 11 16788999999874 7788877766 7665553
No 394
>PRK10115 protease 2; Provisional
Probab=96.61 E-value=2.1 Score=51.90 Aligned_cols=198 Identities=8% Similarity=-0.011 Sum_probs=97.6
Q ss_pred ccEEEEEEccCCCEEEEEEC-----CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC-----ce
Q 001319 407 ISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~-----d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~ 476 (1101)
-.+..+.|||||++||.+.. ...|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 35778899999999997633 23589999998864321 1222 1 146999999986 33333322 35
Q ss_pred EEEEE-cCC--ceeEEeecCCcCeEEEecccCCCccEEEEecc---CCeEEEEecCC--CCeeeeccCCCCceEEEEEcc
Q 001319 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1101)
Q Consensus 477 v~iwd-~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~ 548 (1101)
|..++ -++ +-...+........-..+. ..++++++..+. ++.+.+++.+. ......+.........+. ..
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 77777 555 2223333323333311222 324555544333 35688888532 222222222222222222 22
Q ss_pred CCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
+..+...+..+.....|...++. .++....+....+..+..+.+.. +..+++...+|.-+++-+
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQI 343 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEE
Confidence 23333333222234445555555 23333333332333566677762 234444556666555443
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.57 E-value=0.81 Score=47.68 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=90.6
Q ss_pred CeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcccc
Q 001319 847 ASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS-IDTWEKRK 924 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd-~~~~~~~~ 924 (1101)
.+.+.++++ ++..+|... .++.-.+|-...+.....+. -...+....|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 688999999 777665554 33334444434333333321 223788899999988777777677777774 3333322
Q ss_pred ceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CCeEEEEEcC---Cc---eeeeEeccCCCCCCCEEEEEEccCCCE
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS---KM---ERIRQWTPQDALSAPISCAVYSCNSQL 994 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~~i~v~d~~---~~---~~~~~~~~~~~h~~~v~~v~~s~dg~~ 994 (1101)
...+...... ..|..+.+||||..++... ++.|.+--+. .+ ...............++.+.|.+++.+
T Consensus 102 ~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 1122221111 2799999999999999843 6777776543 23 111111111112568999999999998
Q ss_pred EEEEeCCCc
Q 001319 995 VFATFCDGN 1003 (1101)
Q Consensus 995 l~s~~~dg~ 1003 (1101)
++.+...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 777654443
No 396
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.56 E-value=1.2 Score=48.57 Aligned_cols=236 Identities=16% Similarity=0.166 Sum_probs=120.1
Q ss_pred EeEEEecCCCCeEEEEcCCeEEEEECCCceE---EEEee----CCCCCeeEEEEecC---CCCEEEEEeCC--------C
Q 001319 807 VPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGTED--------S 868 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~~la~g~~d--------g 868 (1101)
.+.|+|.|||+++++-..|+|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999998887799999999 44443 22221 22345788999992 24444444421 2
Q ss_pred cEEEEEeecc-------eEE-Eeecc---CCCCeeEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCcccc
Q 001319 869 TIHIYNVRVD-------EVK-SKLKG---HQKRITGLAFSTSLNILVSSGADAQ-------------LCVWSIDTWEKRK 924 (1101)
Q Consensus 869 ~v~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~s~d~~~l~s~s~Dg~-------------v~lwd~~~~~~~~ 924 (1101)
.|.-|.+..+ +.+ ..+.. .......|+|.|||.+.++.+..+. |.-.+... +...
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 4444554433 111 12222 2334567999999987777765443 22222211 1000
Q ss_pred c----------eEEeecCCCCCCCcceEEEcCC-CCEEEE--EeCCeEEEEEcCCcee----------------------
Q 001319 925 S----------VTIHIPAGKTPTGDTRVQFNAD-QVRMLV--VHETQLAIYDASKMER---------------------- 969 (1101)
Q Consensus 925 ~----------~~~~~~~~~~~~~v~~~~~s~d-~~~l~~--~~d~~i~v~d~~~~~~---------------------- 969 (1101)
. ..+ ...+. .....++|+|. |.+.++ +.+..=.|..+..+..
T Consensus 162 dnP~~~~~~~~~~i-~A~Gl--RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 162 DNPFVGDDGADSEI-YAYGL--RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TSTTTTSTTSTTTE-EEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCccccCCCceEEE-EEeCC--CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0 000 00001 34557899999 776665 3333323332222211
Q ss_pred -------eeEeccCCCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCcc
Q 001319 970 -------IRQWTPQDALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1035 (1101)
Q Consensus 970 -------~~~~~~~~~h~~~v~~v~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~ 1035 (1101)
+..+. +...++.+.|-. +|.++++.-..+.|....++.+..+..... .. .....
T Consensus 239 ~~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~------~~~~~ 306 (331)
T PF07995_consen 239 CPGFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL------GGFGG 306 (331)
T ss_dssp -TTS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC------TTSSS
T ss_pred CCCcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc------ccCCC
Confidence 11111 134556666643 455666666677788777765533222110 00 12223
Q ss_pred ceEEEEEecCCCCEEEEEECCCeEE
Q 001319 1036 YPLVVAAHPLEPNQFAIGLTDGSVK 1060 (1101)
Q Consensus 1036 ~~~~l~~~p~d~~~l~s~~~Dg~v~ 1060 (1101)
.++.+++.| |+.++++...+|+|.
T Consensus 307 r~~~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 307 RPRDVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEET-TSEEEEEE-TTTTEE
T ss_pred CceEEEEcC-CCeEEEEECCCCeEe
Confidence 567999999 799999888888874
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.56 E-value=0.068 Score=45.89 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=64.6
Q ss_pred EEEEEEe---cCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 347 VISMDFH---PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 347 V~~v~fs---pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
|+++++. -||..-|++|+.|..|+||+=+ +.+.. -.-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 5566654 4565567889999999999843 22221 113567888887766 66888
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEec---CCCceEEEEecCCceEE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~~~d~~v~ 478 (1101)
+..+|+|-+|+-... .. ..+. ...+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lW----RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LW----RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-ee----eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976431 11 1222 22355555543 3433 578888788764
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.044 Score=59.43 Aligned_cols=145 Identities=11% Similarity=0.084 Sum_probs=97.4
Q ss_pred EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCC--E-----EEEEeCCCcEEEEECCCCccccceEEeecC
Q 001319 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN--I-----LVSSGADAQLCVWSIDTWEKRKSVTIHIPA 932 (1101)
Q Consensus 860 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~--~-----l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~ 932 (1101)
+|..+..-..++-.|+..|+.+.++.-|.. |+-+.+.|+.+ . -+.|-.|..|+-||..-...-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344555557789999999999999987766 88888888754 1 234667888999998743221111111111
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceee-eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 933 ~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
-.......+.+-..+|..++.+.+|.|++||- .+..- ..+++. ..+|..|..+.||++|+..+ +.++.+-++.
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL---G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL---GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc---CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 11114556667777777666677999999998 44433 334333 89999999999999988665 6667666654
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.45 E-value=0.48 Score=49.36 Aligned_cols=146 Identities=12% Similarity=0.078 Sum_probs=90.6
Q ss_pred CCEeEEEecCCCCeEEEEc--CCe--EEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE-eecce
Q 001319 805 EAVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDE 879 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd-~~~~~ 879 (1101)
..+.+.++|+||+.+|... ++. ++++... ....... ....++.-.|++ ++.+.++...+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555543 3222221 233788889999 788777777677777774 23332
Q ss_pred EE-Eeecc--CCCCeeEEEEcCCCCEEEEEe---CCCcEEEEECCCCccc----cceEEeecCCCCCCCcceEEEcCCCC
Q 001319 880 VK-SKLKG--HQKRITGLAFSTSLNILVSSG---ADAQLCVWSIDTWEKR----KSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 880 ~~-~~~~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~v~lwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
.. ..+.. -.+.|..+.+||||.++|... .++.|.+=-+.....- .......... ....+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCE
Confidence 22 11211 112899999999999888765 3577777665432221 1111121111 125788999999999
Q ss_pred EEEEEe
Q 001319 950 RMLVVH 955 (1101)
Q Consensus 950 ~l~~~~ 955 (1101)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 888754
No 400
>PRK13684 Ycf48-like protein; Provisional
Probab=96.44 E-value=1.9 Score=47.16 Aligned_cols=158 Identities=10% Similarity=0.037 Sum_probs=90.1
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~ 923 (1101)
...+..+.+.+ ++.+++++ ..|.++.-.-..++. ...-.+-...++++.+.++++.++++ ..|.+++=..+.|+.=
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899998 77766555 456554321111221 11122334678999999998876654 5676653333433311
Q ss_pred cceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc
Q 001319 924 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1003 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~ 1003 (1101)
.. ...........+..+.+.+++..++++.++.+. ...+.++.-........-......+.|..+++.+++| ..|.
T Consensus 249 ~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~ 324 (334)
T PRK13684 249 SK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGV 324 (334)
T ss_pred cc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCce
Confidence 11 111111111356788999999888888777665 4555555444433211113467888888777766644 5888
Q ss_pred EEEEeC
Q 001319 1004 IGVFDA 1009 (1101)
Q Consensus 1004 i~vwd~ 1009 (1101)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 877763
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.44 E-value=0.48 Score=51.41 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=107.8
Q ss_pred CcccEEEee-cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc---
Q 001319 748 SAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--- 823 (1101)
Q Consensus 748 ~~~~l~~~~-~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--- 823 (1101)
+.++|+..+ ..+.|.+.|+......+.-...... .++... . .-..-..+..-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~---------~ev~~k--~---g~s~PHT~Hclp~G~imIS~lGd~ 151 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP---------EEVFEK--T---GLSRPHTVHCLPDGRIMISALGDA 151 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H---------HHHHHH--H----EEEEEEEEE-SS--EEEEEEEET
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH---------HHHHhh--c---CCCCCceeeecCCccEEEEeccCC
Confidence 345566666 5688999888765443322111110 000000 0 001111233346888887762
Q ss_pred C----CeEEEEECCCceEEEEeeCCCC---CeeEEEEecCCCCEEEEEe--------------------CCCcEEEEEee
Q 001319 824 G----GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT--------------------EDSTIHIYNVR 876 (1101)
Q Consensus 824 d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~--------------------~dg~v~iwd~~ 876 (1101)
+ |.+.++|-++.+.......... --..+-|.| ..+.+++.. ...++.+||+.
T Consensus 152 ~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 152 DGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred CCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 2 4589999998888877654322 245667777 666666654 23589999999
Q ss_pred cceEEEeeccCC--CCeeEEEEcCC--CCEEEE-EeCCCcEEEE-ECCCCccccceEEeecCCC---------------C
Q 001319 877 VDEVKSKLKGHQ--KRITGLAFSTS--LNILVS-SGADAQLCVW-SIDTWEKRKSVTIHIPAGK---------------T 935 (1101)
Q Consensus 877 ~~~~~~~~~~h~--~~V~~l~~s~d--~~~l~s-~s~Dg~v~lw-d~~~~~~~~~~~~~~~~~~---------------~ 935 (1101)
+.+.++++.--. ..+..+.|..+ ..+=++ +.-..+|..| .-+.++......+.+.... .
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 999998886432 23566777654 333333 2333444444 3345544444444333211 0
Q ss_pred CCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce---eeeEeccC-C------------CCCCCEEEEEEccCCCEEEE
Q 001319 936 PTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME---RIRQWTPQ-D------------ALSAPISCAVYSCNSQLVFA 997 (1101)
Q Consensus 936 ~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~---~~~~~~~~-~------------~h~~~v~~v~~s~dg~~l~s 997 (1101)
+.-++.+.+|.|.++|.++. .|.++.||+..-. ++.+.... . .-.+...-|..|-||+.|..
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 24578999999999999976 8999999998633 33222211 0 01234477889999998886
Q ss_pred Ee
Q 001319 998 TF 999 (1101)
Q Consensus 998 ~~ 999 (1101)
.+
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 54
No 402
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.37 E-value=0.0092 Score=40.46 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778888999999999 778999999999999996
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.22 E-value=0.4 Score=56.31 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=121.3
Q ss_pred cCCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC------ceEEEEE-c
Q 001319 416 PDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-L 482 (1101)
Q Consensus 416 pdg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d------~~v~iwd-~ 482 (1101)
..+..+++|+.+ ..+..||..+++-.. ...+. +...-.+++.. ++. +.++||.| .++..|| .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecCC
Confidence 345566677666 358888888763221 11222 22223344444 445 78888888 3577888 5
Q ss_pred CCceeE--EeecCCcCeEEEecccCCCccEEEEeccCCe-----EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 483 SGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 483 ~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
.++-.. .+...........+ +|.+.++|+.||. +-.||..+.+=...-......-..-...-+|+..++
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred CCceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEE
Confidence 444221 12111111211211 5678888998864 666776554322222111211122223346777777
Q ss_pred eecCCCCC--ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeeeEeeccCCC
Q 001319 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGG 628 (1101)
Q Consensus 556 ~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 628 (1101)
||.+...+ ..+..||..+.+....-.-........++. -++...+.||.|+ +|..||..+.+....-.....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 77544332 578899998876554433322212222332 3456666777665 377888887766554322222
Q ss_pred CCCCCeeEEecCCCEEEEEEcCCc-----EEEEEcccc
Q 001319 629 LPNLPRLRFSKEGNLLAVTTADNG-----FKILANAIG 661 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~~d~~-----i~iwd~~~~ 661 (1101)
...+..+. -++...++|+.||. |..||..+.
T Consensus 513 rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 513 RSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 11122222 26677777776653 555555443
No 404
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.055 Score=58.73 Aligned_cols=143 Identities=12% Similarity=0.127 Sum_probs=98.2
Q ss_pred CCCEEE-EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEE-----EEecCCceEEEEE--cCCc-ee
Q 001319 417 DGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV-----VTCGDDKLIKVWE--LSGR-KL 487 (1101)
Q Consensus 417 dg~~la-s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l-----~s~~~d~~v~iwd--~~~~-~~ 487 (1101)
+..+|+ ++.....++-.|++.|+.+. ++.-|.. |+-+.+.|+.+.--+ +.|-.|..|.-|| ..++ .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 44555668888999998877 5655655 888888887652111 3456788999999 5665 33
Q ss_pred EEeecCC----cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 488 FNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 488 ~~~~~h~----~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
..-.+|+ ....|.+- .++| ++++||.+|.||+||--......-+.+-+.+|..+..+.||++++..+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 3333332 23444443 3343 899999999999999744444456677788999999999999998776 6
Q ss_pred ceEEEEeC
Q 001319 564 SFLVEWNE 571 (1101)
Q Consensus 564 ~~i~iwd~ 571 (1101)
..+.+.++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 67777764
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.15 E-value=1.5 Score=42.92 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=41.8
Q ss_pred EEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 810 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 810 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
+++..+|.+.++.. .++|..+|..+|+.+.++.-+...|+++||--.+-.++.+
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 45566788766665 7899999999999999999999999999996422234443
No 406
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.11 E-value=1.9 Score=44.12 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=85.6
Q ss_pred cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 535 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+....+.++.|+|+.+.|++... ...-.++=..+|+.++++....-.....+.+..+|.++++--.++.++++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 334445899999999999998874 4445556567789988877544334556788888877777778899999887
Q ss_pred CCCeeeEee-----cc---CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 615 DNVNILTST-----DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 615 ~~~~~~~~~-----~~---~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
.....+... .. .........++|+|....|.++-.-.-+.||...
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 765322211 11 1113346789999999999988888888888765
No 407
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.10 E-value=0.44 Score=41.03 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=55.9
Q ss_pred EEEEEEec---CCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe
Q 001319 454 VNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (1101)
Q Consensus 454 V~~l~~s~---d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 530 (1101)
|+++++.. ||.. .|+.|+.|..|++|+.. ..+..+.. .+.|.+++-... ..++.+..+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGG---GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCC---CEEEEEecCCEEEEEeC--cce
Confidence 55666544 5555 79999999999999943 55666654 445777765432 57889999999999953 444
Q ss_pred eeeccCCCCceEEEEE
Q 001319 531 RVDYDAPGHWCTTMLY 546 (1101)
Q Consensus 531 ~~~~~~~~~~v~~~~~ 546 (1101)
.+....... +.++++
T Consensus 74 lWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAF 88 (111)
T ss_pred eeeeccCCC-eEEEEE
Confidence 555554444 555544
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.02 E-value=3.6 Score=46.27 Aligned_cols=127 Identities=19% Similarity=0.326 Sum_probs=78.2
Q ss_pred ecCCCcEEEEEEecCC----ceEEEEEeccCcEEEEecCCC-----ceeccccceeecccccCccccccccccCCccEEE
Q 001319 341 LHQGSTVISMDFHPSH----QTLLLVGSSNGEITLWELAMR-----DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg----~~llasg~~d~~i~iwd~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
+|.=+.|..+.|.|-+ ..|||+- ....|.||.+... +.+......+ .. +++ ---..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi---~e---~~p--------vLpQG 117 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEI---RE---PFP--------VLPQG 117 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeec---cC---Ccc--------cCCCc
Confidence 4555679999999963 3577764 6779999998632 2222111111 00 000 01125
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
+.|+|....|++-.....-.++++...... ....+ .-.+.|.|.+|.+||+++.++.|+ .=.-++||...+
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~sr-VkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~qK 188 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSR-VKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQK 188 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCce-EEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCchh
Confidence 789999999988776655566777643321 11123 456789999999999985555555 556789994333
No 409
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.075 Score=62.81 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
.+..+|.|+..|.|-..|+.+. +++...-..-.++|++++|+.||+ .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667999999999999988774 222212224567999999999999 799999999999999 88888888888887
Q ss_pred CeEEEeccc-CCCccEEEEeccCCeEEEEec
Q 001319 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1101)
Q Consensus 496 ~v~~v~~~~-~~~~~~l~s~~~d~~i~~wd~ 525 (1101)
+++++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777665432 223446777777776 4644
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=2.3 Score=43.53 Aligned_cols=170 Identities=9% Similarity=0.126 Sum_probs=110.4
Q ss_pred eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 842 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 842 ~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
.+-...+.++.|+| +.+.|++......-.|+=..+|+.+.++.-. -...-.+.+..+|++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34445599999999 6777777776777777777788888776421 234567888889999998889999999988765
Q ss_pred ccccce---EEeecCCCC-CCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCC-------CCCEEEEEE
Q 001319 921 EKRKSV---TIHIPAGKT-PTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL-------SAPISCAVY 988 (1101)
Q Consensus 921 ~~~~~~---~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h-------~~~v~~v~~ 988 (1101)
...... .+....... ..+...++|+|....|.++. .+-+.||....+..-........+ -..|..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322111 122211111 36788999999999988876 455777766533311111110000 234667777
Q ss_pred cc-CCCEEEEEeCCCcEEEEeCCCC
Q 001319 989 SC-NSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 989 s~-dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
.+ .+.+|+.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 75 4567777888888888887643
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.87 E-value=1.1 Score=54.26 Aligned_cols=239 Identities=11% Similarity=0.018 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCC--------eeEEEEec---------------CCCCEEEEEeCCCcEE
Q 001319 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 815 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~la~g~~dg~v~ 871 (1101)
++.+.++..++.|.-.|..+|+.+.++...... ...+++-. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788888899999888877542211 12233321 0234778899999999
Q ss_pred EEEeecceEEEeeccCCCCee-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCccccce
Q 001319 872 IYNVRVDEVKSKLKGHQKRIT-------------GLAFST--SLNILVSSGA----------DAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~-------------~l~~s~--d~~~l~s~s~----------Dg~v~lwd~~~~~~~~~~ 926 (1101)
-.|..+|+....+.. .+.|. .+.-+| .+..++.|+. +|.|+-+|+.+|+.+-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 22110 011111 1345566643 688999999999976544
Q ss_pred EEeecCCCCCCCcceEEEcCCCCEEEEEeCC--eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 927 TIHIPAGKTPTGDTRVQFNADQVRMLVVHET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 927 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
........ .. -+++.....+..+ ...-||.+.+....-. .. .. ..+-...+........++|
T Consensus 353 ~~g~p~~~--~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--Gn--~~----pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT--AP------PAPGETYTRNTPNSWSVASYDEKLGLVYLPM--GN--QT----PDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc--cC------CCCCCEeccCCCCccCceEEcCCCCeEEEeC--CC--cc----ccccCCccccCcccccceE
Confidence 32111110 00 0122222211111 2333344333321110 00 00 0010011101111224567
Q ss_pred EEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC---EEEEEECCCeEEEEeCCCCCCcccc
Q 001319 1005 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN---QFAIGLTDGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1005 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~---~l~s~~~Dg~v~iWd~~~~~~~~~~ 1073 (1101)
.-.|++||+..-.++......-. ..-...++-+.....++. .++.++.+|.+.+.|-.+|+..|..
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD---~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWD---MDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEeCCCCceEEEecccCCcccc---ccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 77888888887766531100000 000011111222211342 7999999999999999999977764
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.76 E-value=1.6 Score=47.48 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=89.4
Q ss_pred CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccc-cCCccEEEEEEccCCCEEEEEE--C----C
Q 001319 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--T----K 427 (1101)
Q Consensus 355 dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~las~~--~----d 427 (1101)
+.++|++-|-..+.|.|.|+.+.-... .-+++.+.. .+.. .--..-..+---|+|+.++++- . -
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 356676666688899999997532211 001111100 0000 0001112223336898888752 2 2
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec--------------------CCceEEEEE-cCCce
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~--------------------~d~~v~iwd-~~~~~ 486 (1101)
|-+.+.|-++.+.......-.+...--..+-|.|..+ .++|.. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4577888776554432211112233345666777655 666654 245799999 88888
Q ss_pred eEEeecCC-c-CeEEEecccCCCccEEEEec-cCCeEEEEec-CCCC----eeeeccCC-----------------CCce
Q 001319 487 LFNFEGHE-A-PVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1101)
Q Consensus 487 ~~~~~~h~-~-~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~-~~~~----~~~~~~~~-----------------~~~v 541 (1101)
++++.--. + ....|.|..+++..+=++++ ...+|..|-- +.++ ....+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88876432 2 35567776665544433332 3444444432 2211 11111110 2347
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
+.+.+|.|.++|..+.. ..|.|+.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998876 6889999999863
No 413
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.68 Score=44.29 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=103.2
Q ss_pred CCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 815 NDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 815 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
+|.++.+.+ ..+|++||+.+|+.+....-....+..=-...-+..+.+..-.+|.-++||..+.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556665554 35699999999998776554322221111111022333444568889999999888877664 33444
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 971 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 971 (1101)
..++- |++.|+.++...++++-|-++........+. -+ |..+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT----------------~~-------------------g~pv~ 176 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT----------------DD-------------------GVPVS 176 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE----------------EC-------------------Ceecc
Confidence 55543 5555666666666777776664433222211 11 11111
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
.+ .-+.|- ||...|---.+..|..-|.++|+....+..+.-....-....+.--...+++.|..+++++
T Consensus 177 ~L----------NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 177 KL----------NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred cc----------cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 11 111221 4555555555666777777777777776644432211111112122357999997667777
Q ss_pred EE
Q 001319 1052 IG 1053 (1101)
Q Consensus 1052 s~ 1053 (1101)
||
T Consensus 246 TG 247 (262)
T COG3823 246 TG 247 (262)
T ss_pred ec
Confidence 76
No 414
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.72 E-value=1.6 Score=42.68 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=79.8
Q ss_pred cCcEEEEEEecCCCceEEE-EecCCceEEEEE-cCCceeEEeecCC--------cCeEEEecccCCCccEEEEeccCCeE
Q 001319 451 VGAVNDLAFAYPNKLLCVV-TCGDDKLIKVWE-LSGRKLFNFEGHE--------APVYSICPHHKENIQFIFSTAIDGKI 520 (1101)
Q Consensus 451 ~~~V~~l~~s~d~~~~~l~-s~~~d~~v~iwd-~~~~~~~~~~~h~--------~~v~~v~~~~~~~~~~l~s~~~d~~i 520 (1101)
..+.+.-..+|+|+ +++ +-+.-+. +.. ..|..-.-+.+|. +--+.++|..+ ...+-++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~--~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGD--DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccc--cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEE
Confidence 34567777899999 432 2221111 222 2222222233332 22345677633 22445566777888
Q ss_pred EEEecCC--C-----CeeeeccC----CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceE
Q 001319 521 KAWLYDT--M-----GSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (1101)
Q Consensus 521 ~~wd~~~--~-----~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 589 (1101)
.-||++- + +.++.+.. .......+++..+|++.+++-. .++|...|..+|+.+.++.-... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 8888433 2 22222222 1112345666778888777764 78899999999999999988766 789
Q ss_pred EEEEeCC
Q 001319 590 VVQFDTT 596 (1101)
Q Consensus 590 ~~~~~~~ 596 (1101)
++||...
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9998753
No 415
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.72 E-value=0.037 Score=39.45 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=28.6
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeec
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~ 436 (1101)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.71 E-value=0.025 Score=54.77 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=60.3
Q ss_pred EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCC
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALS 980 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~ 980 (1101)
.|..-+.||.|+-+++...+........... . .....-+..+++ +.++.|.+|...-........... .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e------~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~--~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDE------G--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG--E 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhc------c--eeecccCceEEeecccceEEEecCCccchHHHhhhcc--c
Confidence 3444567888888877653322111111111 1 112222334444 569999999887322221111110 2
Q ss_pred CCEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 981 APISC-AVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 981 ~~v~~-v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
..|.+ +.-..++.+..++..||.||-|++.-++.+.....
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence 22222 33334556788999999999999998888877664
No 417
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.70 E-value=0.03 Score=54.27 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred CeEEEEc-CCeEEEEECCCc-eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC-CCeeE
Q 001319 817 SYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITG 893 (1101)
Q Consensus 817 ~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~ 893 (1101)
.-+++|. +|.|.+|...-. .....+..-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 3455554 999999987521 11111112223343333333356689999999999999999998888888887 56666
Q ss_pred EEEcCCCCEEEEE--eCCCcEEEEECCC
Q 001319 894 LAFSTSLNILVSS--GADAQLCVWSIDT 919 (1101)
Q Consensus 894 l~~s~d~~~l~s~--s~Dg~v~lwd~~~ 919 (1101)
+..+..++.++.+ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777777 7777777787765
No 418
>PHA02713 hypothetical protein; Provisional
Probab=95.64 E-value=0.36 Score=56.93 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=96.7
Q ss_pred CCCeEEEEc-C------CeEEEEECCCceEEEEeeCCCCCe-eEEEEecCCCCEEEEEeCCC-----cEEEEEeecce--
Q 001319 815 NDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDE-- 879 (1101)
Q Consensus 815 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~dg-----~v~iwd~~~~~-- 879 (1101)
++.+.+.|+ + ..+..||..+..-...-.-....- .+++. - ++++.+.|+.++ ++..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 667666665 3 237788887654321111111111 12222 2 678888888764 47889987653
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCccccceEEeecCCCCC
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADA-----------------------QLCVWSIDTWEKRKSVTIHIPAGKTP 936 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~v~lwd~~~~~~~~~~~~~~~~~~~~ 936 (1101)
.+..+.........++ -+|+..+.||.++ .|..||..+.+......+..
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~------ 452 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT------ 452 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc------
Confidence 2222221111112222 3678888887653 46778877754332221111
Q ss_pred CCcceEEEcCCCCEEEEEe-C------CeEEEEEcCC-ce--eeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC--cE
Q 001319 937 TGDTRVQFNADQVRMLVVH-E------TQLAIYDASK-ME--RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG--NI 1004 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~-d------~~i~v~d~~~-~~--~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg--~i 1004 (1101)
......+..-+++..++|+ + ..+..||..+ .+ .+..+... ......+.+ +|+..++|+.|| .+
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEEE--CCEEEEEeeecceeeh
Confidence 1111112233455555543 2 2467899886 33 33333222 222333333 788888999888 78
Q ss_pred EEEeCCCCcee
Q 001319 1005 GVFDADTLRLR 1015 (1101)
Q Consensus 1005 ~vwd~~~~~~~ 1015 (1101)
..||..+.+..
T Consensus 528 e~yd~~~~~W~ 538 (557)
T PHA02713 528 DTFNVYTYEWN 538 (557)
T ss_pred hhcCccccccc
Confidence 88888876553
No 419
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=0.04 Score=64.96 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=70.2
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~ 438 (1101)
++|.|+..|.|-..|+.+.-... +.-..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~------------------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL------------------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh------------------hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 56888888999888876531100 001224679999999999999999999999999999999
Q ss_pred cccccceeeecccCcEEE---EEEecCCCceEEEEecCCceEEEEE
Q 001319 439 NDLRQHSQIDAHVGAVND---LAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 439 ~~~~~~~~l~~h~~~V~~---l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.++ .+..|..+++. +.+..++. .+.++...|. +|.
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 8877 44445544444 44555555 6777776665 676
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.57 E-value=0.032 Score=39.73 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=29.5
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCce
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~ 379 (1101)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8899999999999998 4543
No 421
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.32 E-value=6.1 Score=44.00 Aligned_cols=278 Identities=10% Similarity=0.136 Sum_probs=142.2
Q ss_pred ecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-----CCCEEEEEECC
Q 001319 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1101)
Q Consensus 353 spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-----dg~~las~~~d 427 (1101)
+++++..+++||..|.++||+...+..... .+ ..-..-..+|..++.-. +...||+- .-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAVL-HP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEEe-cC
Confidence 344555678999999999999855432110 00 00111245676666432 33455554 45
Q ss_pred CeEEEEeecCCccc------ccceeeecccC--cEEEEEEec----CCCceEEEEecCCceEEEEEcCCceeE-Eeec--
Q 001319 428 HLIQLYSYAGSNDL------RQHSQIDAHVG--AVNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKLF-NFEG-- 492 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~------~~~~~l~~h~~--~V~~l~~s~----d~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~-- 492 (1101)
..+.||.+...... ..+..+..|.- ....++.-| .|+. .++.=+.||.+.+++.+.-... .+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 56888888422111 11112223322 222233322 2233 7888899999999995554433 3322
Q ss_pred CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-----------------------eeeccCCCC--ceEEEEEc
Q 001319 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-----------------------RVDYDAPGH--WCTTMLYS 547 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 547 (1101)
..+++ ++.+.. +.+++++.+..+..|.+..... .+.+..... .+..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 33444 343433 4788888888888886532110 011111111 23333444
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC----CC---CEEEEEeCCCcEEEEECCCCeee
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
.....+++-+ +..+.+.+. +|......+- .-.+.....|.. ++ ..+++++.++++.||.= .+++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEE
Confidence 3333444443 556666665 4544333322 221222222222 22 24888999999999963 3444
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
..-......-.+....|..-...|++-+.+|.+.+--+.+.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 44433221111122222233558888889999999877766
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.29 E-value=4 Score=41.74 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=115.3
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee-eccCCCCCCCCEeEEEecC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA-NDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~ 814 (1101)
...-..++.|..+|..+-+.+.-|.-.+. .+++.+|+... ..+. ...--..+++-.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~--------------------~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR--------------------KVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEE--------------------EEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEE--------------------EEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 34455778888888877777776643332 22344554332 2221 233344556554
Q ss_pred CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-----CC
Q 001319 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-----QK 889 (1101)
Q Consensus 815 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-----~~ 889 (1101)
|.-+..+-.++...+||..+.+.+.++.-. +.=..++. +++.|+.......++++|..+.+....+... -.
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 444445555899999999999999988753 45566663 5667777777778999998777666555322 12
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC---------CCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 890 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG---------KTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 890 ~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
.++.|.|- +|...|=.-....|..-|..+|+......+..... ....-...+|+.|....+.+.+..--+
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ 254 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK 254 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc
Confidence 45667775 56666655555667788888888766554322110 012457889999988877776544434
Q ss_pred EEE
Q 001319 961 IYD 963 (1101)
Q Consensus 961 v~d 963 (1101)
+|.
T Consensus 255 lye 257 (264)
T PF05096_consen 255 LYE 257 (264)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 423
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.08 E-value=4.3 Score=40.93 Aligned_cols=242 Identities=14% Similarity=0.108 Sum_probs=148.8
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE-
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK- 881 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~- 881 (1101)
...-..++-++||..-.+++ .+.|--.|..+|+....--+....-..+..-| |+..-++-+.. .|.=.|-++.+..
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEE
Confidence 34456788889998887877 67788889999988877666666677788888 55444333222 3444444443321
Q ss_pred Ee--eccCCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 882 SK--LKGHQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 882 ~~--~~~h~~~V~~l~~s~d~~~l~s~s~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
.. .+.-........|.++|++.+++... +.|++|+.-.| .....++..|||..
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~gpyGi~atpdGsv 202 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GGPYGICATPDGSV 202 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------------CCCcceEECCCCcE
Confidence 11 12224557788899999988887532 33455544322 45677899999998
Q ss_pred EEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCccc
Q 001319 951 MLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL 1029 (1101)
Q Consensus 951 l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1029 (1101)
-+++ .++.|...|..++.. ..+.........-+.+.-+|.|+..++....+.+.-||-.+-..+..-.+
T Consensus 203 wyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLP--------- 272 (353)
T COG4257 203 WYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLP--------- 272 (353)
T ss_pred EEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCC---------
Confidence 7774 467777777776632 33333332234455666778888888888888898888876553322111
Q ss_pred CCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC-CccccCCC
Q 001319 1030 NGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE-GKWGVSPP 1076 (1101)
Q Consensus 1030 ~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~-~~~~~~~~ 1076 (1101)
+..-.+.++.-.. .++...+--.-|.|.-+|.++.+ ..+..++|
T Consensus 273 --gs~arpys~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 273 --GSKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred --CCCCCcceeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 1111112232233 24555555556778878877766 55555555
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.85 E-value=0.77 Score=51.24 Aligned_cols=154 Identities=12% Similarity=0.176 Sum_probs=90.4
Q ss_pred CCeeEEEEecCCCCEEEEEe--CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC----CEEEEEeCCCcEEEEECCC
Q 001319 846 PASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL----NILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~----~~l~s~s~Dg~v~lwd~~~ 919 (1101)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+.. -..|..++|+|-+ ..|...-..+.|.+|.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4688899985 444444432 334443322 223333 3458999999853 2455556677899999863
Q ss_pred Cc-----cccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE-EEEEcC--CceeeeEeccCCCCCCCEEEEEEccC
Q 001319 920 WE-----KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDAS--KMERIRQWTPQDALSAPISCAVYSCN 991 (1101)
Q Consensus 920 ~~-----~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i-~v~d~~--~~~~~~~~~~~~~h~~~v~~v~~s~d 991 (1101)
.. ........+. ...+.-...+.|+|....|++-....+ .+++.. +......+.. .+.|.|.+|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~D 166 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKD 166 (671)
T ss_pred Cccccccceeeeeeecc-CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCc
Confidence 22 2211111111 111133456889999999998543334 334443 3333344433 788999999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCC
Q 001319 992 SQLVFATF-CDGNIGVFDADTL 1012 (1101)
Q Consensus 992 g~~l~s~~-~dg~i~vwd~~~~ 1012 (1101)
|+.|+++- ..=.-+|||-...
T Consensus 167 G~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCEEEEEeCCeEEEEEecCchh
Confidence 99887653 3345788986654
No 425
>PHA03098 kelch-like protein; Provisional
Probab=94.80 E-value=1 Score=53.41 Aligned_cols=153 Identities=9% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---C----CeEEEEEcCC
Q 001319 899 SLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---E----TQLAIYDASK 966 (1101)
Q Consensus 899 d~~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d----~~i~v~d~~~ 966 (1101)
+++..+.||.+ ..+..||..+.+......+... ..-.++ ..-+++..+.|+ + +.+..||..+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-----r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-----RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-----CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 67777888865 3477888877554322211111 111122 223555555543 1 4588999876
Q ss_pred ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC--------cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 967 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG--------NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 967 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
.+-...-..... .... + +...+++..+.|+.++ .+.+||..+.+....-. .+. ..... .
T Consensus 416 ~~W~~~~~~p~~-r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~-----~r~~~-~ 482 (534)
T PHA03098 416 NKWSKGSPLPIS-HYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNF-----PRINA-S 482 (534)
T ss_pred CeeeecCCCCcc-ccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCc-----ccccc-e
Confidence 554322211111 1111 1 2234677667776432 38889988765543211 010 11011 1
Q ss_pred EEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCccccCC
Q 001319 1039 VVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSP 1075 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~~~~~~~~ 1075 (1101)
.+.. ++.+++.||.+ +.|.++|..+.+ |....
T Consensus 483 ~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 519 (534)
T PHA03098 483 LCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT--WTLFC 519 (534)
T ss_pred EEEE---CCEEEEEcCCcCCcccceeEEEeCCCCE--EEecC
Confidence 1221 57788888765 468888887765 65443
No 426
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=94.77 E-value=15 Score=45.51 Aligned_cols=25 Identities=12% Similarity=0.184 Sum_probs=14.8
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
...++|+.+|...++-+ ..|++.|.
T Consensus 477 PkGIa~dk~g~lYfaD~------t~IR~iD~ 501 (1899)
T KOG4659|consen 477 PKGIAFDKMGNLYFADG------TRIRVIDT 501 (1899)
T ss_pred CCceeEccCCcEEEecc------cEEEEecc
Confidence 34677888777655532 24666653
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.66 E-value=6.1 Score=47.61 Aligned_cols=99 Identities=7% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
-...|..|.+||+|++||..|..| |.|-.+-.. ......+.+-...|.|=.+.-+.. +...
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~~------------- 143 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFTS------------- 143 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh---hccC-------------
Confidence 356899999999999999998877 555444210 000001222333344433333332 1111
Q ss_pred ceeEEeecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMG 529 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~ 529 (1101)
.+...|..+.|+|.+ ++..|+.-..|+++|+||+....
T Consensus 144 -------~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 -------NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -------CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 134457778888764 35677788888899999886533
No 428
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.65 E-value=5.4 Score=43.46 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=105.4
Q ss_pred EEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecc--cCCCccE--EEEecc-C---CeEEEEecCCCCe-eeeccC-
Q 001319 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH--HKENIQF--IFSTAI-D---GKIKAWLYDTMGS-RVDYDA- 536 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~--l~s~~~-d---~~i~~wd~~~~~~-~~~~~~- 536 (1101)
+++....++-+.+||..|+.+..+. .+..+.+.+. ..-+|+. |+.++. + .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777778889999999999998885 2344444321 1112222 344432 2 4799998864322 222221
Q ss_pred ------CCCceEEEEEc--c-CCCEEEEeecCCCCCceEEEEeCC---CC----eeEEEecccCCcceEEEEEeCCCCEE
Q 001319 537 ------PGHWCTTMLYS--A-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 537 ------~~~~v~~~~~s--~-d~~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
....+..+|+. + +|.+.+.... .+|.+..|.+. .+ +.++.|.... .+..+.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 11236677763 3 4665554443 36667666553 33 5678887654 57778888888899
Q ss_pred EEEeCCCcEEEEECCC-----CeeeEeeccCCCCCCCCeeEEec--CCC-EEEEE-EcCCcEEEEEcccc
Q 001319 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EGN-LLAVT-TADNGFKILANAIG 661 (1101)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~g~-~l~~~-~~d~~i~iwd~~~~ 661 (1101)
+.+-++.-|.-|+.+. +..+.......-...|-.+++-. ++. +|++. -.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888887752 22332332222234566677643 332 44444 45778999997643
No 429
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.65 E-value=9.6 Score=42.81 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=152.4
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.....|.++.|.-.|.+. +|+.|| +..+|..+++.+.... .....+|..+.-+-.|+ |
T Consensus 162 l~d~~V~aLv~D~~g~lW--vgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-L 219 (671)
T COG3292 162 LKDTPVVALVFDANGRLW--VGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-L 219 (671)
T ss_pred ccCccceeeeeeccCcEE--EecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-E
Confidence 345689999999999843 455665 5667877777654210 11124566665555554 5
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCC--cCeE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVY 498 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~--~~v~ 498 (1101)
.+|+.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +..|+..|..+.--..+..... .+-|. ..|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 5677777 888877763221110 001233444444444444 5556655533222222222211 12222 2334
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc--CCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++.. +.+| -|.+++.+|.+++=+-+-....+.....+..+...+.+| .+..+.... ..+.+.+-+..+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 4433 3344 466677776665443211110111111111121222222 111221111 134466666677777
Q ss_pred EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
++......+..++.+++..+ ..+-.|+...-+..|+..+ +......... ...+|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 77765555556777777774 4556666654555666655 3222222221 234677788888888 777888887654
Q ss_pred EEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
+.+.+ .....+.........+.+..+.+.++|+.-+
T Consensus 444 -~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 444 -DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred -Ccccc-chhcccccccCcCCcchhhhhccCCCCceEE
Confidence 22221 1122222111111223355667777776653
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.62 E-value=0.029 Score=64.54 Aligned_cols=180 Identities=11% Similarity=0.156 Sum_probs=103.9
Q ss_pred CeEEEEECC--CceEEEEeeC-----CCCCeeEEEEecC--CCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEE
Q 001319 825 GKISLFNMM--TFKVMTTFMS-----PPPASTFLAFHPQ--DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 895 (1101)
Q Consensus 825 g~i~vwd~~--~~~~~~~~~~-----~~~~i~~l~~s~~--~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 895 (1101)
|.+.||+++ .|+....+.. -...+.-+.|.|- +.-++..+..+++|++....+... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888875 3444332221 1223344444431 456777888889998877765432 45566877766655
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC-------C--CEEEEEe
Q 001319 896 -----------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-------Q--VRMLVVH 955 (1101)
Q Consensus 896 -----------~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------~--~~l~~~~ 955 (1101)
+||||+.+|.+..||.+++|.+.-.......+.+....|...+-.|.-|+.. + .+++++.
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 4899999999999999999987644333344444444443222222224332 1 2233333
Q ss_pred --CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC--------E----EEEEeCCCcEEEEeCCC
Q 001319 956 --ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ--------L----VFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 956 --d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~--------~----l~s~~~dg~i~vwd~~~ 1011 (1101)
+..+++|....+++...+. ...|..|. -+||+ | +++-+-|+.|.+|.-..
T Consensus 312 d~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 5678899888777762221 23344444 33443 1 23345678888886443
No 431
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.62 E-value=0.59 Score=49.95 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=100.0
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEE-Ee-eCCCC----Cee-EEEEecCCCCEEEEEeCCCcEEEE-E
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT-TF-MSPPP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 874 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~-~~-~~~~~----~i~-~l~~s~~~~~~la~g~~dg~v~iw-d 874 (1101)
...++..+-..|||+.+..-+..++.++++.+..... .+ ....+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4566778889999999988888889999886543321 11 11111 132 223233 66778889999998877 4
Q ss_pred eecc-e----EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 875 VRVD-E----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 875 ~~~~-~----~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..-... .......+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-------~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-------AYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-------hhcCcceeeeCcccc
Confidence 4322 1 122222223344444433345567788888888887655433211111 114677899999999
Q ss_pred EEEEEeCCeEEEEEcCCcee
Q 001319 950 RMLVVHETQLAIYDASKMER 969 (1101)
Q Consensus 950 ~l~~~~d~~i~v~d~~~~~~ 969 (1101)
++++-+.++++++.+++-..
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99999999999998876544
No 432
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=4.1 Score=44.02 Aligned_cols=119 Identities=11% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..++|.++.||+|.+ ++|+--.+++|.+.+....+...... ...+.....|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 567999999999998 77999999999999985433221100 012223556999999865 7777
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
.....| +.+|-+...+ +..+..+.|...|+-..|+++.+-.+|+|+-..+++.=+-
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 777766 8888776543 2223456788899999999998854444443444443333
No 433
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=4.7 Score=46.71 Aligned_cols=219 Identities=10% Similarity=0.086 Sum_probs=109.6
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+.+-+|..+|....=++ +.--.|+|++.. |..+. +++-.|. .+..+.||.+..+| +.
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~------------------~~~w~~~-~lI~mgWs~~eeLI-~v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLG------------------RILWKHG-ELIGMGWSDDEELI-CV 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchH------------------HHHhcCC-CeeeecccCCceEE-EE
Confidence 34455666664311111 233468888864 44443 1233344 88999999777655 45
Q ss_pred ECCCeEEEEeecCCcccccc-eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC-CcCeEEEe
Q 001319 425 FTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSIC 501 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h-~~~v~~v~ 501 (1101)
..+|+++||++-... +... .-.......|..+.|...|= +.-..+|.+.+-+ .....++++..- .......+
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 689999999997532 2210 01122334566666666553 3333345555444 333233333220 01111112
Q ss_pred cccCCC---ccEEEEec-cCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 502 PHHKEN---IQFIFSTA-IDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 502 ~~~~~~---~~~l~s~~-~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
|.-..+ ...++-.. ..+ ..+...+... ....+......+..+..||+.++|+.-.. .|.|++-+.+..+.
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQI 250 (829)
T ss_pred eeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhh
Confidence 211111 11111111 000 0111111111 11223333456888999999999998765 88898888887777
Q ss_pred EEEecccCCcceEEEEEeCC
Q 001319 577 KRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~ 596 (1101)
...+..........++|..+
T Consensus 251 lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 251 LCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred hhccCCCCCCchHhceeecC
Confidence 77766433323334555543
No 434
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.48 E-value=1.6 Score=49.70 Aligned_cols=80 Identities=11% Similarity=0.187 Sum_probs=54.0
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEE-
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY- 962 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~- 962 (1101)
+..|.+.|--+..+..+..|..-...-.+.++|+.+.+..-.. .-.+-+.|-|....+++-+...+.||
T Consensus 333 ~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----------nfcsymqwvp~sdvivaqn~dnl~iwy 402 (1636)
T KOG3616|consen 333 FINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----------NFCSYMQWVPGSDVIVAQNGDNLCIWY 402 (1636)
T ss_pred cccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----------HHhhhheeccCcceEEecCCCceEEEe
Confidence 3458888888888887777777777777889999874422111 23455789999888888766677777
Q ss_pred EcCCceeeeEe
Q 001319 963 DASKMERIRQW 973 (1101)
Q Consensus 963 d~~~~~~~~~~ 973 (1101)
+++-.+.+..+
T Consensus 403 n~d~peqvt~~ 413 (1636)
T KOG3616|consen 403 NIDAPEQVTMF 413 (1636)
T ss_pred cCCcchhheee
Confidence 44444443333
No 435
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.38 E-value=6.5 Score=39.73 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=132.4
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~ 926 (1101)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+.......+...|||...++-+.. -|.-.|-++.+ ..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VT 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eE
Confidence 345677778 88788888888888888888888776666666677788889998877765444 35555555544 23
Q ss_pred EEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001319 927 TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1006 (1101)
Q Consensus 927 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~v 1006 (1101)
.......+.........|.++|.+-.++..|.---.|..+ ..+..+.... ...-..|+..|||...++.-.+..|..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCC--CCCCcceEECCCCcEEEEeccccceEE
Confidence 4444555666788999999999999886533222112111 1222232222 445567888999998888777888888
Q ss_pred EeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC-CccccC
Q 001319 1007 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE-GKWGVS 1074 (1101)
Q Consensus 1007 wd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~-~~~~~~ 1074 (1101)
-|..++.......+.. + |... -.+--+| -++..+|....+.+.-+|.++.. ..|++|
T Consensus 215 idp~~~~aev~p~P~~-~------~~gs---Rriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 215 IDPFAGHAEVVPQPNA-L------KAGS---RRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred cccccCCcceecCCCc-c------cccc---cccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 8877763322222111 0 1111 1222334 47778887778888888877655 555554
No 436
>PHA03098 kelch-like protein; Provisional
Probab=94.37 E-value=0.93 Score=53.79 Aligned_cols=189 Identities=12% Similarity=0.031 Sum_probs=92.6
Q ss_pred CCCCeEEEEc-C------CeEEEEECCCceEEEEeeCC--CCCeeEEEEecCCCCEEEEEeCC-----CcEEEEEeecce
Q 001319 814 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE 879 (1101)
Q Consensus 814 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~ 879 (1101)
.++.+++.|+ + ..+..||..+.+-...-..+ ......+. - ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556666664 2 24778888765543221111 11122222 2 67788888865 357778876653
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
-...-......-...+..-+++..+.||.+ ..+..||..+.+........ .. .. ...+...++...+.
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~---r~-~~~~~~~~~~iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS---HY-GGCAIYHDGKIYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cc---cc-CceEEEECCEEEEE
Confidence 221111011111111122356777777742 35888998875543221111 11 11 11223335555555
Q ss_pred Ee-C--------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce
Q 001319 954 VH-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRL 1014 (1101)
Q Consensus 954 ~~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~ 1014 (1101)
|+ + ..+.+||..+.+-...-..... ......+. .+++.++.|+.+ ..|.+||..+.+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 43 1 2388899876654322111110 11112222 267777777754 4688888887654
No 437
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=94.23 E-value=0.12 Score=47.51 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=58.2
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+++-+.|||++..|..++|..|+++.-.-+.....+.++.|+.+....+..+++....+.+ .+.+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999987666555567788999988877776666555444433 233445556
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
.-|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 55555
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.04 E-value=19 Score=43.75 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred EEecCCCCeEEEEcCCeEEEEECCCceEEEEee--CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee--cceEEEeec
Q 001319 810 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR--VDEVKSKLK 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~--~~~~~~~~~ 885 (1101)
.|+.|-..++.+|-...+++||+...++++... .-...|+.+++ .+..+++|..--.|..+... ..+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 345576668888888999999998776655433 23456777777 55678888766666655444 344332221
Q ss_pred -cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 886 -GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 886 -~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
.-...|+++.+- |-..+|.+..=|.+.+-.+-.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 122336666665 445667676667776665543
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.02 E-value=19 Score=43.62 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=55.9
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCC-ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
..-.|..+.++++|+++|..+...|.|..+.. +.....+.+-...|.|=++.= +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 45578999999999999998876676666542 111122222122222222211 11111
Q ss_pred EeeccCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 001319 882 SKLKGHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123456777888876 46788888888888888864
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.97 E-value=2 Score=50.09 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=77.7
Q ss_pred eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec-cCCCCeeEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 001319 841 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFS--TSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 841 ~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+...-..++.+.-|. -++..++-+...++.|||...+....+-. ...+.|.++.|. ||++.+++.|....|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 44555454455689999999887543222 457889999985 78999999999999999854
Q ss_pred CC-------CccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 918 DT-------WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 918 ~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
.. ........+.. ..+++.+|....|.++|.+++ +.++++.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i-~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI-SSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEe-ecCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence 21 11111112222 334446788999999997554 556678887643
No 441
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=93.79 E-value=0.12 Score=48.04 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=51.8
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+++-+.||+|+..|..++|..|+.+.-.-+.....+++++|..+....+...++....+.. .+.+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 9999999999999999999999999998666665556677888876665554443333332222 233445555
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
..|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=93.73 E-value=2.1 Score=49.59 Aligned_cols=183 Identities=11% Similarity=0.029 Sum_probs=90.1
Q ss_pred CCCeEEEEc-C-----CeEEEEECCCceEEEE--eeCCCCCeeEEEEecCCCCEEEEEeCC--CcEEEEEeecceE--EE
Q 001319 815 NDSYVMSAT-G-----GKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEV--KS 882 (1101)
Q Consensus 815 dg~~la~~~-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~d--g~v~iwd~~~~~~--~~ 882 (1101)
++.++++|+ + ..+..||..+.+-... +.........+ .- ++.+.++|+.+ .++..||..+++- +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 2 2477788876543222 22111112222 23 67888888864 3577888665432 22
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGADA---QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 959 (1101)
.+.. ..-...+..-+|+..+.||.++ .+..||..+.+.......... . ....+..-+++..++| |.+
T Consensus 348 ~l~~--~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-----r-~~~~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLK--PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-----H-YKSCALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCC--CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-----c-ccceEEEECCEEEEEC--Cce
Confidence 2221 1111122233677778888654 477888876543321111110 1 1112223455555555 356
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLR 1013 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1013 (1101)
.+||..+.+-...-..... ......+. -+|+..+.|+.+ .+|.+||..+.+
T Consensus 418 e~ydp~~~~W~~~~~m~~~-r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP-RDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCCC-ccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 7888876554322221110 12222222 367777777754 346677766554
No 443
>PRK13684 Ycf48-like protein; Provisional
Probab=93.55 E-value=14 Score=40.53 Aligned_cols=278 Identities=11% Similarity=0.073 Sum_probs=129.3
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...+.+|+|..+.+ .+|+|. +| .||....+-.- |..... .+......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G--~il~T~DgG~t-------W~~~~~-------~~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NR--TLLETNDGGET-------WEERSL-------DLPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CC--EEEEEcCCCCC-------ceECcc-------CCcccccceeeeEEcCC-cEEEe
Confidence 45788999985554 567774 44 34444333211 110000 01112334778888754 33444
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEec
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~ 502 (1101)
| ..+.|.. .-+.|+.......-....+....+....++. .++. +..|.|..=+..|+.-..+. .-.+.+..+.+
T Consensus 106 G-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~ 180 (334)
T PRK13684 106 G-QPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR 180 (334)
T ss_pred C-CCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence 4 4443222 2333443332110000111122222222232 2333 34454433223333322222 22456778877
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeee--eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
.+ ++.++ ..+..|.+.. ..+.+...+ ........++++.+.++++.++++. .+.+.+-..+.|..-...
T Consensus 181 ~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 181 SP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKP 251 (334)
T ss_pred CC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccc
Confidence 65 44455 4444565532 112222211 1223345788999999999877764 455543233444322221
Q ss_pred ccc---CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc-CCCCCCCCeeEEecCCCEEEEEEcCCcEEEE
Q 001319 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1101)
Q Consensus 581 ~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 656 (1101)
... ....+..+.+.+++. ++.++.+|.+.. ....++.-..... ..-......+.|..+++.++ .+..|.|..|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred cCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 111 112456678888765 555666776653 4455554444332 11112456777776666655 4556777666
Q ss_pred E
Q 001319 657 A 657 (1101)
Q Consensus 657 d 657 (1101)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 4
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=8.1 Score=44.89 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=95.1
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe----eccCCCCeeEEEEcCCCC
Q 001319 826 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK----LKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 826 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~ 901 (1101)
.|+||++ +|+.+..+.-..+.+-.+.|+. +. -|++...+|++++|++... .+.. +......|..+.+..+|=
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 4788887 5666665554455888999997 54 4557789999999998632 2222 122234455555555553
Q ss_pred EEEEEeCCCcEEE-EECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE--EeC--CeEEEEEcCCce-eeeEecc
Q 001319 902 ILVSSGADAQLCV-WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHE--TQLAIYDASKME-RIRQWTP 975 (1101)
Q Consensus 902 ~l~s~s~Dg~v~l-wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d--~~i~v~d~~~~~-~~~~~~~ 975 (1101)
.+ -..+|++.+ -+++.........+. ... -.-.+-..-+++..... .-+ -...++-.+.+. ....+..
T Consensus 141 av--lt~~g~v~~i~~~~~~~~~~~~diP---~~~-~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 141 AV--LTVSGQVILINGVEEPKLRKMPDIP---YNE-LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred EE--EecCCcEEEEcCCCcchhhhCCCCC---Ccc-CCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 33 333444433 333321111111101 100 11122222222111111 101 011122221111 1111111
Q ss_pred CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 976 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 976 ~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
. .+.+..+..||+.++|+.=..+|.|.+-+++..+..+.+.
T Consensus 215 ~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 P---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred C---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 3678899999999999999999999999999888887776
No 445
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.40 E-value=3.6 Score=40.42 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=90.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CC---eEEEEE
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ET---QLAIYD 963 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~---~i~v~d 963 (1101)
...++-++. ..|..+.....|.+|++...+......+.. -+.+..+.++.-|.+|++-. .. .+++|-
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-----v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-----VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-----hhheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 334444443 344444566779999999444332222221 16788999999999999942 23 567662
Q ss_pred ---cC--CceeeeE-eccCC------------------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eEee
Q 001319 964 ---AS--KMERIRQ-WTPQD------------------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL-RCYI 1018 (1101)
Q Consensus 964 ---~~--~~~~~~~-~~~~~------------------~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~-~~~~ 1018 (1101)
.. ....++. ..++. ....++.+++..|-..-|+.|+ ++.+.+|.+..... ...+
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~ 172 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKF 172 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccc
Confidence 11 1122221 11100 0145677888888655566676 56788998876544 1111
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.-..+. ...+-|.....+..+++.. ++++.. .|-.+++..+
T Consensus 173 ~~lDFe-~~l~~~~~~~~p~~v~ic~---~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 173 SFLDFE-RSLIDHIDNFKPTQVAICE---GYIAVM-SDLEVLVLKL 213 (215)
T ss_pred cEEech-hhhhheecCceEEEEEEEe---eEEEEe-cCCEEEEEEE
Confidence 111111 2333467777788888876 355555 4567777665
No 446
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.24 E-value=9.1 Score=42.80 Aligned_cols=203 Identities=13% Similarity=0.015 Sum_probs=109.9
Q ss_pred ecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCC--CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC-
Q 001319 812 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ- 888 (1101)
Q Consensus 812 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~- 888 (1101)
..-||+.++...+|.|.-+|..++..+.....-. ..+..-.+.. +|+ +..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666668888888888888765443321 2333333333 555 6688889989999988898887776554
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK 966 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~ 966 (1101)
..+..-....++ .+..++.++.+.-.+-.+|+.+-....... ....+..-....++...+... ++.+.-++..+
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP---LSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc---cccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 112222222233 333333677777777777765433222210 001111111133444444433 45677778878
Q ss_pred ceeeeEeccCCCC-CCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 967 MERIRQWTPQDAL-SAPISCAVYSCN-----SQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 967 ~~~~~~~~~~~~h-~~~v~~v~~s~d-----g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
|...........- ...+........ +.-+..++.+|.+.-.|..+|+.+-....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 8776663321100 111100111111 12235666778888889888888777663
No 447
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.21 E-value=2 Score=49.99 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=73.0
Q ss_pred EEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee-cCCcCeEEEecccCCCccEEEEeccCCeEEEEec-----C
Q 001319 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY-----D 526 (1101)
Q Consensus 454 V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~-----~ 526 (1101)
..-+.-+.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++|+.+++.+..+.|.++-- .
T Consensus 32 ~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444455 344444456899999 5555332222 3577899999999999999999999999999842 1
Q ss_pred CCCe----e--eeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 527 TMGS----R--VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 527 ~~~~----~--~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
...+ . ..+.. ..++|....|.++|..++.++ +.+.++|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 1 11222 346789999999998887764 46888774
No 448
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.14 E-value=1.8 Score=48.19 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCceEEEEEe-----------ccC-cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~-----------~d~-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
....+|+|.++|+ |+++-. ..+ .|.+++-..+.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4678899999998 545431 223 677776543322111 001122233456889
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCC-----cccccceeeec----ccCcEEEEEEecCCC
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGS-----NDLRQHSQIDA----HVGAVNDLAFAYPNK 464 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~-----~~~~~~~~l~~----h~~~V~~l~~s~d~~ 464 (1101)
+|.++| .++ ++.....++.|.... +.......+.. +......++|.|||.
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 999999 444 444433334354321 11111111211 234578899999997
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.10 E-value=12 Score=38.73 Aligned_cols=208 Identities=16% Similarity=0.172 Sum_probs=116.5
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEee------cc-eEEEeecc-----CCCCeeEEEEcCCCC------------EE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVR------VD-EVKSKLKG-----HQKRITGLAFSTSLN------------IL 903 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~------~~-~~~~~~~~-----h~~~V~~l~~s~d~~------------~l 903 (1101)
-..++++| .+.+.++....+...+||.. .. .++-.+.. -....+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999 77888888888999999986 12 22333331 234577888874322 35
Q ss_pred EEEeCCCcEEEEECCCCccc--cceEEeecCCCCCCCcceEEEc--CCCCEEEEEe--CCeEEEEEcCCceeee--Eecc
Q 001319 904 VSSGADAQLCVWSIDTWEKR--KSVTIHIPAGKTPTGDTRVQFN--ADQVRMLVVH--ETQLAIYDASKMERIR--QWTP 975 (1101)
Q Consensus 904 ~s~s~Dg~v~lwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~--d~~i~v~d~~~~~~~~--~~~~ 975 (1101)
+.+++||+|.-|.-.-+... ... +....+.....-..+++- ..+.+|...+ .++|.|||-.-.+... .+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~-~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAE-IVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccE-EEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 77889999999986443321 111 111111111222344444 3466666654 8999999865332211 0110
Q ss_pred C--CC--C---------CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEE
Q 001319 976 Q--DA--L---------SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042 (1101)
Q Consensus 976 ~--~~--h---------~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~ 1042 (1101)
. .. - .--|+...-.+++..=+.|..-|.|-+||.. |+++.++.....+- .+..++-
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LN----------aPWG~a~ 251 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLN----------APWGLAI 251 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCccc----------CCceeee
Confidence 0 00 0 1112222222333333344456789999975 77888776332221 2334554
Q ss_pred ecC-----CCCEEEEEECCCeEEEEeCCCCC
Q 001319 1043 HPL-----EPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1043 ~p~-----d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.|. .+.+|+-=--||+|..||..+++
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 442 36677766679999999998877
No 450
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.98 E-value=16 Score=46.79 Aligned_cols=148 Identities=12% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|-..++.|.-+|+|.++=+ .|+.++.||..+...... -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~Wk~~-------------------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTARWKPP-------------------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccceecCC-------------------CCcccchhhhhcccCCCceEe
Confidence 5667788888888885422 788888888776532210 111344566666666777666
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc---CCc----e--eEEeecC
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL---SGR----K--LFNFEGH 493 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~---~~~----~--~~~~~~h 493 (1101)
=+.+ .|-|+.++.... ..-..+.+...+++|.- .+.++-...++.+|+. .+. + ...+.+-
T Consensus 419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2222 134555543211 12345777888899983 4667777777899992 221 1 1233333
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
.....+|.++. + .|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~--d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN--D--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC--C--eEEEEeCCCCEEeccccc
Confidence 44566777754 2 688888899887766543
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.89 E-value=0.41 Score=51.03 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=98.7
Q ss_pred eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE-Eee-ccCCC----Cee-EEEEcCCCCEEEEEeC
Q 001319 836 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKL-KGHQK----RIT-GLAFSTSLNILVSSGA 908 (1101)
Q Consensus 836 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~-~~~-~~h~~----~V~-~l~~s~d~~~l~s~s~ 908 (1101)
+.+..+......+..+-..| |++.|.+-+. .++.++++.+.... +++ ....+ .|+ .+..-..|..|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444555667788899999 8998877665 78999998865432 111 11111 122 2223345677888999
Q ss_pred CCcEEEE-ECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEE
Q 001319 909 DAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCA 986 (1101)
Q Consensus 909 Dg~v~lw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v 986 (1101)
||.|.-| |+..+...+...++...-. +..+..+.-....+-++. ...|++.++.....+.+..-.. -..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC-cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCccee
Confidence 9998887 5544333221111111110 022222222222333333 4467777776554444332222 3356788
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 987 VYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 987 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
++||++.+|++-. .|.|+++.+++...
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCCCC
Confidence 9999999998765 66799999887644
No 452
>PHA02790 Kelch-like protein; Provisional
Probab=92.52 E-value=4.2 Score=47.14 Aligned_cols=187 Identities=7% Similarity=-0.052 Sum_probs=92.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCccccceEEe
Q 001319 857 DNNIIAIGTEDS-----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 857 ~~~~la~g~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D--g~v~lwd~~~~~~~~~~~~~ 929 (1101)
++.++++|+.++ .+..||..+++-...-.-...........-+++..+.||.+ .++..||..+++......+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 556777777543 46677777654322111111111111123467777888764 35788887654332211111
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEEEe-C---CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLVVH-E---TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIG 1005 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~~~-d---~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~ 1005 (1101)
. ......+..-+|+..++|+ + ..+..||..+.+-...-..... .... .+..-+|+..+.|+ .+.
T Consensus 351 -----~-~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~--~~~~~~~~IYv~GG---~~e 418 (480)
T PHA02790 351 -----K-PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKS--CALVFGRRLFLVGR---NAE 418 (480)
T ss_pred -----C-CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccc--eEEEECCEEEEECC---ceE
Confidence 0 1111222233566656543 2 4577888876554332221110 1111 12234677666664 578
Q ss_pred EEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CeEEEEeCCCCC
Q 001319 1006 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESE 1068 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~ 1068 (1101)
+||..+.+....-. .+.. ... . +++.. ++.+++.||.+ ..+..||..+++
T Consensus 419 ~ydp~~~~W~~~~~----m~~~---r~~--~--~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 419 FYCESSNTWTLIDD----PIYP---RDN--P--ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EecCCCCcEeEcCC----CCCC---ccc--c--EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 89988765432211 1100 111 1 12211 57888999865 357788888766
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.47 E-value=0.26 Score=57.13 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=94.1
Q ss_pred CCCcEEEEEEe----cCCceEEEEEeccCcEEEEecCC--CceeccccceeecccccCccccccccccCCccEEEEEEc-
Q 001319 343 QGSTVISMDFH----PSHQTLLLVGSSNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS- 415 (1101)
Q Consensus 343 h~~~V~~v~fs----pdg~~llasg~~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s- 415 (1101)
..++|-.++|- |.++. .-|...|||++- |+......+++ ...-...+.-|.|.
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 45667777763 33431 235778999864 33322211111 11122233444444
Q ss_pred --cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEE-----------EecCCCceEEEEecCCceEEEEE-
Q 001319 416 --PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA-----------FAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 416 --pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
++.-++..+-.+++|++.++.+... . .+.+|..++..++ .||||. .++.+..||.++.|.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 4777888888889999887776432 1 3456888777765 488999 899999999999888
Q ss_pred -cCCc----eeEEeecCCc-CeEEEecccCC-------CccEEEEec-cCCeEEEEecCCCCee
Q 001319 482 -LSGR----KLFNFEGHEA-PVYSICPHHKE-------NIQFIFSTA-IDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 482 -~~~~----~~~~~~~h~~-~v~~v~~~~~~-------~~~~l~s~~-~d~~i~~wd~~~~~~~ 531 (1101)
.+|+ |+..++.|.+ +-.|.-++... --.++++++ ....+++|.-...++.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6665 4556667763 22222122110 012334433 3456888865555544
No 454
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.46 E-value=27 Score=41.00 Aligned_cols=391 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccC-------CccEEEEEEcc-----
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-------PISVSRVAWSP----- 416 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-------~~~v~~~~~sp----- 416 (1101)
++..|.|+ .++.+..++.+.|+.++. .+.... ...+ ...|..++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCEEEEEECCCe------EEEEeecCCcccccceeeec------ccCcEEEEEEecCCCceEEEEecCCceEEEEE--c
Q 001319 417 DGNYVGVAFTKHL------IQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1101)
Q Consensus 417 dg~~las~~~d~~------i~vwd~~~~~~~~~~~~l~~------h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~ 482 (1101)
+...+|.--.+.. .+-|+...+........-.. +..+..-+..-.... .++.++..-.+..=. .
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~~~~i~y~~~~~~ 186 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGGENIIIYKNHLIG 186 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEESSEEEEEE----
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEECCEEEEEeccccc
Q ss_pred CCceeEEeecC-----CcCeEEEec-----ccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCC-CCceEEEEEccC
Q 001319 483 SGRKLFNFEGH-----EAPVYSICP-----HHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP-GHWCTTMLYSAD 549 (1101)
Q Consensus 483 ~~~~~~~~~~h-----~~~v~~v~~-----~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~d 549 (1101)
.+.....-... ..-+.+.+. ....++..++.+..+|.+..-.+.... ......+. .....++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~ 266 (504)
T PF10433_consen 187 SGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKN 266 (504)
T ss_dssp --TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEEST
T ss_pred ccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcC
Q ss_pred C--CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe----CCCC------EEEEEe---CCCcEEEEEC
Q 001319 550 G--SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD----TTQN------HFLAVG---EDSQIKFWDM 614 (1101)
Q Consensus 550 ~--~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~------~l~~~~---~dg~i~iwd~ 614 (1101)
| -.++.+.. +|+.+..|....-+.+..+.... ++..+++. .... .+++++ .+|.+++..-
T Consensus 267 g~d~lf~gs~~---gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 267 GGDYLFVGSEF---GDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp T--EEEEEESS---S-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCEEEEEEEec---CCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc--ccccccccccCCCcccccCcceeeeeeeccc
Q 001319 615 DNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
.-+-. ......-.+...++.+....++...+..+....-+++.+. .....+.......+......+.+-.+. +.
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~ 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DG 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TT
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CC
Q ss_pred cccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 691 SAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
.+ +.+.+.+-+++..........|...
T Consensus 420 ~i--------------------------------------------------vQVt~~~i~l~~~~~~~~~~~w~~~--- 446 (504)
T PF10433_consen 420 RI--------------------------------------------------VQVTPKGIRLIDLEDGKLTQEWKPP--- 446 (504)
T ss_dssp EE--------------------------------------------------EEEESSEEEEEESSSTSEEEEEE-T---
T ss_pred eE--------------------------------------------------EEEecCeEEEEECCCCeEEEEEeCC---
Q ss_pred CCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCC-----C
Q 001319 771 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP-----P 845 (1101)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~-----~ 845 (1101)
....|.+.+.. ++..+++..++.+..+.+............ .
T Consensus 447 --------------------------------~~~~I~~a~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (504)
T PF10433_consen 447 --------------------------------AGSIIVAASIN-DPQVLVALSGGELVYFELDDNKISVSDNDETILELD 493 (504)
T ss_dssp --------------------------------TS---SEEEES-SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-S
T ss_pred --------------------------------CCCeEEEEEEC-CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCC
Q ss_pred CCeeEEEEec
Q 001319 846 PASTFLAFHP 855 (1101)
Q Consensus 846 ~~i~~l~~s~ 855 (1101)
..|.|+...|
T Consensus 494 ~eis~l~i~p 503 (504)
T PF10433_consen 494 NEISCLSIEP 503 (504)
T ss_dssp S-EEEEE---
T ss_pred CceEEEEeCC
No 455
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.30 E-value=7.6 Score=45.87 Aligned_cols=116 Identities=8% Similarity=0.073 Sum_probs=76.4
Q ss_pred ccEEEEEEcc--CCCEEEEEECCCeEEEEeecC-------C----------cccccceeeecccCcEEEEEEe--cCCCc
Q 001319 407 ISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKL 465 (1101)
Q Consensus 407 ~~v~~~~~sp--dg~~las~~~d~~i~vwd~~~-------~----------~~~~~~~~l~~h~~~V~~l~~s--~d~~~ 465 (1101)
..|+.|...- +...|+.|..||.|.+|.+++ . ..+++...+. -...++.+++. ...+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r- 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR- 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-
Confidence 3566665554 567899999999999997631 0 0111222222 34478999998 5555
Q ss_pred eEEEEecCCceEEEEE--c-CCceeE-EeecCCcCeEEEecccCCC---cc-EEEEeccCCeEEEEec
Q 001319 466 LCVVTCGDDKLIKVWE--L-SGRKLF-NFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (1101)
Q Consensus 466 ~~l~s~~~d~~v~iwd--~-~~~~~~-~~~~h~~~v~~v~~~~~~~---~~-~l~s~~~d~~i~~wd~ 525 (1101)
++|.++....|.||- . ..+... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 -LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 788888888888887 3 222111 1113666799999876642 32 7888999999999887
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.08 E-value=0.044 Score=58.87 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=133.1
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
...+.+.+..++.++.+..+..||-... ..... ........++|..+|..++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq----------------------~~le~-----n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ----------------------VILEL-----NPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc----------------------eeccc-----CCchhHhhhhhccccchhhh
Confidence 3455666666777777777766653211 01110 13444556777777776665
Q ss_pred Ec--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCC
Q 001319 822 AT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 899 (1101)
Q Consensus 822 ~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 899 (1101)
.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++..+.+.+-..-.|..+++++++.+.
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 54 68899999975433222112122223378999 8899999999999999998887766666569999999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEe-ecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEE-----EcCCceeeeEe
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY-----DASKMERIRQW 973 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~-----d~~~~~~~~~~ 973 (1101)
+ +.+.++.|..+.+-...+..... .... .+.....-....=.|..-|..+...-.+++.+. ..+....+ .+
T Consensus 171 d-~vil~dcd~~L~v~~qegeta~l-tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~f 247 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVTTQEGETASL-TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QF 247 (615)
T ss_pred c-eeeecCcHHHHHHhhhccceeee-eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-Ee
Confidence 5 55666666554443332211100 0000 000000000111122333444443222222211 11111112 33
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1016 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1016 (1101)
... .+.+.|+.|=-||. |..+..-|.|..-...++++..
T Consensus 248 q~~---~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLga 286 (615)
T KOG2247|consen 248 QEK---YGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGA 286 (615)
T ss_pred eec---CCceeEEEEecccc-ccccccceeEEEEeccchHHHH
Confidence 332 67788888888875 5557777777777777766544
No 457
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.07 E-value=5.8 Score=44.22 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=79.2
Q ss_pred CCeeEEEEecCCCCEEEEEe-----------CCC-cEEEEEeec--ce--EEEeeccCCCCeeEEEEcCCCCEEEEEeCC
Q 001319 846 PASTFLAFHPQDNNIIAIGT-----------EDS-TIHIYNVRV--DE--VKSKLKGHQKRITGLAFSTSLNILVSSGAD 909 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D 909 (1101)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.+++ .++ +..+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3456788888 777665542 223 677776442 22 223333334456889999988 444 4444
Q ss_pred CcEEEEECCCCccc---cceEEeecCCC---CCCCcceEEEcCCCCEEEE-EeC-------------------CeEEEEE
Q 001319 910 AQLCVWSIDTWEKR---KSVTIHIPAGK---TPTGDTRVQFNADQVRMLV-VHE-------------------TQLAIYD 963 (1101)
Q Consensus 910 g~v~lwd~~~~~~~---~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~-~~d-------------------~~i~v~d 963 (1101)
...++.|....... ....+...... .......++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334454332111 11111211111 1245778999999987775 311 3355555
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.++++.. .+... -.....++|+++|+++++-.
T Consensus 171 pdg~~~e-~~a~G---~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLR-VVAHG---FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEE-EEecC---cCCCccceECCCCCEEEEcc
Confidence 5544432 22221 34456899999999877644
No 458
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=1.3 Score=53.34 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=96.4
Q ss_pred CCCCEeEEEecCCCCeEEEEc--CC-eEEEEECCCceEEE-----EeeC------CCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 803 LEEAVPCIALSKNDSYVMSAT--GG-KISLFNMMTFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
..-++..+...+|+...++.. +| .|..||+.+...-. -+.. ...-..++.|.|.-....|+...|+
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 344566677778887665553 44 58999997543221 1111 1233567788873334456777899
Q ss_pred cEEEEEeecceE-EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 869 TIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 869 ~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
.|++..+..... ...+ .-....++++|+|.|+.++.|-..|++.-|...-.... .++.+.......|.+++|-..
T Consensus 179 sl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred chhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCCCcceeEEEEecc
Confidence 999887764322 2222 24567899999999999999999999998876543211 222222222478999999988
Q ss_pred CCEEEEE
Q 001319 948 QVRMLVV 954 (1101)
Q Consensus 948 ~~~l~~~ 954 (1101)
..++++.
T Consensus 255 ~eflvvy 261 (1405)
T KOG3630|consen 255 QEFLVVY 261 (1405)
T ss_pred eeEEEEe
Confidence 8888874
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.57 E-value=0.51 Score=32.56 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred CcEEEEEEecCCc--eEEEEEeccCcEEEEecCCC
Q 001319 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAMR 377 (1101)
Q Consensus 345 ~~V~~v~fspdg~--~llasg~~d~~i~iwd~~~~ 377 (1101)
+.|.+|.|||... -|||..-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998543 47788888899999999853
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=3.6 Score=45.24 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=63.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEe---------CCCCc--eeEeeCCCCcCCCcccCCCCccceEEEEEecCC--
Q 001319 980 SAPISCAVYSCNSQLVFATFCDGNIGVFD---------ADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE-- 1046 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~~dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d-- 1046 (1101)
.-.|..+..|+.|..++..+.+|.+.++= ++.|+ ..|+..+... ..+..+..+....++|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeeccCCceeeeeccccCCccC
Confidence 45678889999999999999899654432 12232 2333322111 11113344566789999975
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCccccCCC
Q 001319 1047 PNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1076 (1101)
Q Consensus 1047 ~~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~ 1076 (1101)
+..|+.-+.|+.+++||+++....|..+.+
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 667888889999999999999877776554
No 461
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.27 E-value=57 Score=42.28 Aligned_cols=131 Identities=13% Similarity=0.145 Sum_probs=75.3
Q ss_pred cCCeEEEEECCCce--EEE--------------EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEe----ecceEEE
Q 001319 823 TGGKISLFNMMTFK--VMT--------------TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV----RVDEVKS 882 (1101)
Q Consensus 823 ~dg~i~vwd~~~~~--~~~--------------~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~----~~~~~~~ 882 (1101)
.+|+|.-||-.+.. -.. .+.-..+.|..+.+++ ...-++-|. +..+-+=-. .-|..+.
T Consensus 621 ~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~-~~~~~~~g~-~~~~a~~~~r~~~e~G~~l~ 698 (1774)
T PF11725_consen 621 QDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ-EHPSIAHGD-NNVFALPQRRNKVELGDALE 698 (1774)
T ss_pred ccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeeccc-CCCccccCC-CcccccccccCCCCCCcccc
Confidence 47999999864321 100 0111345677777776 444343332 111111000 0122232
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEE
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY 962 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~ 962 (1101)
-+. ...|++++.-.+ +.+++....|.+.... ..+. +.......-.+.|..++......+.+...+|.+.-.
T Consensus 699 Gl~--~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 699 GLE--DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred CCC--cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 233 456888888755 5667788889999888 5554 222222222378999999999998888888887765
Q ss_pred Ec
Q 001319 963 DA 964 (1101)
Q Consensus 963 d~ 964 (1101)
+-
T Consensus 770 ~k 771 (1774)
T PF11725_consen 770 PK 771 (1774)
T ss_pred CH
Confidence 43
No 462
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.25 E-value=12 Score=41.85 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=108.1
Q ss_pred EEEEEeCCCcEEEEEeecceEEEeeccC--CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCC
Q 001319 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGH--QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 860 ~la~g~~dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
.+.++..+|.|.-.|..++..+.....- ...+..-.+..+|+ ++.++.+|.+..+|..+|+..-...... . .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~-~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG----S-P 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----C-e
Confidence 3445577888888888777755322211 12223333333665 6778888988889998877654443332 0 0
Q ss_pred CcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCcee
Q 001319 938 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC--DGNIGVFDADTLRLR 1015 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~~~~~ 1015 (1101)
......+-.++..++...++.+.-.+..+|...-.......-...+..-....++. ++.+.. ++.+.-.|..+|...
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCcEe
Confidence 12222333344444444578888888888877655433210011111111122333 444444 566777788888776
Q ss_pred EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccccCCC
Q 001319 1016 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1076 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~ 1076 (1101)
-............+.-...+....+. -+.-+..++.+|.+.-.+..+++..|+.+.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 65321110000000000001111111 1223467778888999999999999988876
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.86 E-value=12 Score=40.94 Aligned_cols=164 Identities=13% Similarity=0.164 Sum_probs=94.0
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCc------EEEEEeecc----eEE-----EeeccCCC--------CeeEEEEcCCCC
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDST------IHIYNVRVD----EVK-----SKLKGHQK--------RITGLAFSTSLN 901 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~------v~iwd~~~~----~~~-----~~~~~h~~--------~V~~l~~s~d~~ 901 (1101)
-+.+..+.+.+.++. +++.+.+|. ++.+++... ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888863444 445566666 666665531 001 11111111 345788888888
Q ss_pred EEEEEeCC------CcEEEEECCCCccccceEEee---------cCCCCCCCcceEEEcCCCCEEEEE------eCC--e
Q 001319 902 ILVSSGAD------AQLCVWSIDTWEKRKSVTIHI---------PAGKTPTGDTRVQFNADQVRMLVV------HET--Q 958 (1101)
Q Consensus 902 ~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~d~~~l~~~------~d~--~ 958 (1101)
++++.-.+ -.|..++.. |.......+.. ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888877 55544432221 112233678899999999955542 122 1
Q ss_pred -------EEE--EEcCC-ceeeeEeccCCC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCC
Q 001319 959 -------LAI--YDASK-MERIRQWTPQDA------LSAPISCAVYSCNSQLVFATF-----CDGNIGVFDAD 1010 (1101)
Q Consensus 959 -------i~v--~d~~~-~~~~~~~~~~~~------h~~~v~~v~~s~dg~~l~s~~-----~dg~i~vwd~~ 1010 (1101)
+++ ||..+ ++....+..... ....|+.+.+-+|+++|+.== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 323333222111 257789999999999877521 34456665544
No 464
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=3.7 Score=49.71 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCCEeEEEecCCCC--eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 804 EEAVPCIALSKNDS--YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
.....++.|.|.-. .++.-.|+.|+|..+........--.-....++++|+| .|+.+++|...|++.-|... .+..
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik 232 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIK 232 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-ccee
Confidence 33455667776533 23333488888877653222211112345689999999 89999999999999988754 3333
Q ss_pred Eeecc----CCCCeeEEEEcCCCCEEEEE
Q 001319 882 SKLKG----HQKRITGLAFSTSLNILVSS 906 (1101)
Q Consensus 882 ~~~~~----h~~~V~~l~~s~d~~~l~s~ 906 (1101)
..+.+ -...|.+|+|-....+|++-
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 33321 14789999998777777654
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.50 E-value=11 Score=37.11 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=88.0
Q ss_pred CEEEEEeCCCcEEEEEee--cceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC------cEEEE---ECCCCccccce-
Q 001319 859 NIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA------QLCVW---SIDTWEKRKSV- 926 (1101)
Q Consensus 859 ~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~lw---d~~~~~~~~~~- 926 (1101)
+.|..+.....|.+|++. ..+.+..|.. -+.|..+.++..|++|+|--.+. .+|+| +....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455667889999998 3455666653 48899999999999999964332 45554 33311100000
Q ss_pred -----------------EEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCcee-ee---EeccC-----CCCC
Q 001319 927 -----------------TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER-IR---QWTPQ-----DALS 980 (1101)
Q Consensus 927 -----------------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-~~---~~~~~-----~~h~ 980 (1101)
.+...+-.-.....+++..|-..-|++|.++.+.+|.+..... .. .+... +...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 0000011111467788888887778888999999998765433 11 11110 0003
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 981 APISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 981 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
-....++|. +.|+|..+ +-.++|+.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 335666665 56777776 5567776653
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.41 E-value=1 Score=30.70 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=23.6
Q ss_pred ecCCCcEEEEEEecCCceEEEEEecc--CcEEEE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d--~~i~iw 372 (1101)
+.....-.+.+|||||++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556788999999999988887777 766666
No 467
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.28 E-value=37 Score=38.46 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....|..+.+...|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+..|
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 345788899988885 45677887 888898888766521 112335677777777776 67777554 66666555
No 468
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.15 E-value=36 Score=38.07 Aligned_cols=151 Identities=10% Similarity=0.095 Sum_probs=83.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEE-EEEeecceE--EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIH-IYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 925 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~-iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~ 925 (1101)
..+..++ ++.+++++. .|.+. -||- |.. ...-......++++.|.+++..++++ .+|.+ +|....++.-..
T Consensus 242 ~~v~~~~-dG~~~~vg~-~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSP-DGDYVAVSS-RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeEEEcC-CCCEEEEEC-CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 3445566 677766665 34433 3332 221 11112234568999999998877655 55654 444444431110
Q ss_pred eEEeecC-CCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 926 VTIHIPA-GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 926 ~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
....... ......+..+.|.+++..+++|..|.+.... +.|+.-........-..+...+.|.++++.+++| .+|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 0111111 1111357889999999999888888666653 4444433322111115678899998887766655 47777
Q ss_pred EEE
Q 001319 1005 GVF 1007 (1101)
Q Consensus 1005 ~vw 1007 (1101)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 469
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.10 E-value=0.96 Score=31.24 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.5
Q ss_pred ccEEEEEEccC-C--CEEEEEECCCeEEEEeecC
Q 001319 407 ISVSRVAWSPD-G--NYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 407 ~~v~~~~~spd-g--~~las~~~d~~i~vwd~~~ 437 (1101)
++|.++.|||+ + .+||.+-..+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 5888888889999999986
No 470
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.04 E-value=29 Score=36.90 Aligned_cols=191 Identities=11% Similarity=0.101 Sum_probs=101.9
Q ss_pred EeEEEecCCCCeEEE--Ec-C----------CeEEEEECCCceEEEEeeCC------CCCeeEEEEecCCC----CEEEE
Q 001319 807 VPCIALSKNDSYVMS--AT-G----------GKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDN----NIIAI 863 (1101)
Q Consensus 807 v~~~~~s~dg~~la~--~~-d----------g~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~----~~la~ 863 (1101)
|..+.+.++|++-+. |. + -+|.+||+.+.+.++++.-+ ......+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 26889999999988876543 23466777765222 23333
Q ss_pred Ee-CCCcEEEEEeecceEEEeeccC-------------------CCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 001319 864 GT-EDSTIHIYNVRVDEVKSKLKGH-------------------QKRITGLAFST---SLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 864 g~-~dg~v~iwd~~~~~~~~~~~~h-------------------~~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+. ..+.|.|+|+.+++.-+.+..+ .+.+..++.+| ++++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 4468999999988765544332 12366666655 666666555433 244444332
Q ss_pred cccc-----ce----EEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCce---eeeEeccCCCCCCCEEEEE
Q 001319 921 EKRK-----SV----TIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME---RIRQWTPQDALSAPISCAV 987 (1101)
Q Consensus 921 ~~~~-----~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~---~~~~~~~~~~h~~~v~~v~ 987 (1101)
-... .. .++.. +........++++++|.+..+ ...+.|..|+..+.- ....+......-..+..+.
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 1110 00 01111 111135567889998888777 468899999988611 1112211111145788999
Q ss_pred Ecc--CCCEEEEEe
Q 001319 988 YSC--NSQLVFATF 999 (1101)
Q Consensus 988 ~s~--dg~~l~s~~ 999 (1101)
+.+ +|.+.+...
T Consensus 241 i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 241 IDPEGDGYLWVLSN 254 (287)
T ss_dssp E-T--TS-EEEEE-
T ss_pred eccccCceEEEEEC
Confidence 998 787666554
No 471
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.96 E-value=8.3 Score=44.25 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....++++.-+|.|+.++.+..||+|++|+.......+ +.....+-..+.|...| |++...|+.+.-|..+|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheeeccC
Confidence 45578888889999999999999999999987654322 11223344556676544 56677788888898777
Q ss_pred ceeEEee
Q 001319 485 RKLFNFE 491 (1101)
Q Consensus 485 ~~~~~~~ 491 (1101)
-..+.|.
T Consensus 85 vvqqqfd 91 (1636)
T KOG3616|consen 85 VVQQQFD 91 (1636)
T ss_pred cchhhcc
Confidence 6555553
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.79 E-value=3.2 Score=51.28 Aligned_cols=167 Identities=14% Similarity=0.237 Sum_probs=96.5
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
.|..+.....|...=..|-+-|-=++..+ +.|+.+.+|+++++..... +.+-...|..|
T Consensus 67 IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V 125 (1311)
T KOG1900|consen 67 IPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKV 125 (1311)
T ss_pred CCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhheee
Confidence 34444444445445555555555333444 4789999999998654431 44444455555
Q ss_pred E--------EccCCCEEEEEECCCeEEEEeecCCcccccce------eeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 413 A--------WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS------QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 413 ~--------~spdg~~las~~~d~~i~vwd~~~~~~~~~~~------~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
. |-|.=+++++-..--.|.++-+.-.+...... .+.-..-.|+|+....+|+ ++++|- || .
T Consensus 126 ~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~-dg--~ 200 (1311)
T KOG1900|consen 126 GLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGR-DG--N 200 (1311)
T ss_pred eeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEeec-CC--C
Confidence 3 33344455554444557776654332211111 1222355789999888888 555554 55 4
Q ss_pred EEE-----cCC---c-e----------------eEEee-cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 479 VWE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 479 iwd-----~~~---~-~----------------~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
+|. .+| + | +..+. .+..+|..+++.. ....+.+-+..|+|++|++..
T Consensus 201 lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 201 LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 444 111 1 1 11223 5677899998854 447889999999999999865
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.62 E-value=2 Score=41.70 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.9
Q ss_pred ccEEEEEEccCC------CEEEEEECCCeEEEEeecC
Q 001319 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 407 ~~v~~~~~spdg------~~las~~~d~~i~vwd~~~ 437 (1101)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788899999999998764
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.74 E-value=28 Score=38.01 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCc------EEEEECCCCc-------cccceEEeecCCCCC----CCcceEEEcCCCCE
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQ------LCVWSIDTWE-------KRKSVTIHIPAGKTP----TGDTRVQFNADQVR 950 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~------v~lwd~~~~~-------~~~~~~~~~~~~~~~----~~v~~~~~s~d~~~ 950 (1101)
-+.+..|.+.+++..++..+++|. +...++.... ......+....+... ....++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999876667777788877 6666655411 011111222222111 14457888888888
Q ss_pred EEEEe-C------CeEEEEEcCCceeeeEeccCC------------CCCCCEEEEEEccCCCEEEEEe
Q 001319 951 MLVVH-E------TQLAIYDASKMERIRQWTPQD------------ALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 951 l~~~~-d------~~i~v~d~~~~~~~~~~~~~~------------~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
+++.. + ..|..++.. |+.+..+.... ......-+++++|||+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 77754 4 678888876 66655542111 1367789999999999766654
No 475
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.74 E-value=16 Score=42.28 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=29.0
Q ss_pred CccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccccCCC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1076 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~ 1076 (1101)
+-..+.++.+.+.++.+++|+-.-..|...|..+++-.|.+.++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 33456689999965666666655558999999999988888776
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.45 E-value=15 Score=33.04 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEee--------cceEEEeeccCCCCeeEEEEcC----CCCEEEEEeCCCcEEEE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVR--------VDEVKSKLKGHQKRITGLAFST----SLNILVSSGADAQLCVW 915 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~--------~~~~~~~~~~h~~~V~~l~~s~----d~~~l~s~s~Dg~v~lw 915 (1101)
|..-.|.. ....|+.++.-|+|.|++.. ....+..+. -...|++|+-.+ +++-++.-+....+..|
T Consensus 1 VaiGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CeEEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Q ss_pred ECCCCccccceEEeecCCCCCCCcceEEE----cCCCCEEEEEeCCeEEEEEcCCceeeeEecc
Q 001319 916 SIDTWEKRKSVTIHIPAGKTPTGDTRVQF----NADQVRMLVVHETQLAIYDASKMERIRQWTP 975 (1101)
Q Consensus 916 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 975 (1101)
|+......-...+. ..+.++.+ ..+..++++|.+..|.-||.+..+.......
T Consensus 79 DV~~N~d~Fyke~~-------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 79 DVENNSDLFYKEVP-------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred EcccCchhhhhhCc-------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
No 477
>PLN02153 epithiospecifier protein
Probab=88.34 E-value=32 Score=37.85 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=15.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 001319 899 SLNILVSSGAD-----AQLCVWSIDTWE 921 (1101)
Q Consensus 899 d~~~l~s~s~D-----g~v~lwd~~~~~ 921 (1101)
++++++.||.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56677777754 247788887754
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.21 E-value=36 Score=35.53 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred CCeEEEEECCCceEEEEeeC--CCCCeeEEEEec-----CCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC------C
Q 001319 824 GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK------R 890 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~-----~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~------~ 890 (1101)
-|.|-+||+ .|..++++.. .-..-..|+..| -.+.+|+---.||+|-.||..+++.+..+....+ .
T Consensus 221 ~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 221 LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 467999998 4677776642 334455666655 2467777767899999999999988877765433 3
Q ss_pred eeEEEEcC
Q 001319 891 ITGLAFST 898 (1101)
Q Consensus 891 V~~l~~s~ 898 (1101)
.+.|+|..
T Consensus 300 LWgL~fGn 307 (336)
T TIGR03118 300 LWSLTFGN 307 (336)
T ss_pred eEEeeeCC
Confidence 56677754
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=18 Score=35.06 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=61.8
Q ss_pred CccEEEEeccCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 507 ~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
+|.++.+.+.-| .|++||+.+++...........+..=-...-|.++..-.. .++.-..+|..+.+++..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 456777776544 6999999988877655443222211111122333332222 47778889988888877765433
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
. -.. ...|+..|+.+....+++.-|.++....
T Consensus 132 e--GWg--Lt~d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 132 E--GWG--LTSDDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred c--cee--eecCCcceEeeCCceEEEecCHHHhhhc
Confidence 2 222 3345666777766667777776654433
No 480
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.91 E-value=43 Score=36.05 Aligned_cols=210 Identities=12% Similarity=-0.008 Sum_probs=102.4
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCe--EEEEECCCceEE---------------EEeeCCCCCeeEEEEecCCCCEEEEEe
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTFKVM---------------TTFMSPPPASTFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~~~~~la~g~ 865 (1101)
+...|+++.+.+..+.|++-++.. ++++++...... ...-.+.......+........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 667899999999888888777665 999998433210 111123333344444431222333444
Q ss_pred CCCcEEEEEeecc--e--EEEee---c-cCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEECCC--CccccceEEeecCC
Q 001319 866 EDSTIHIYNVRVD--E--VKSKL---K-GHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDT--WEKRKSVTIHIPAG 933 (1101)
Q Consensus 866 ~dg~v~iwd~~~~--~--~~~~~---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~lwd~~~--~~~~~~~~~~~~~~ 933 (1101)
...+|.++..... + ....+ . .-..++..+..+++ ...++.|+..+-..++++.. ...... .......
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-ccccccc
Confidence 4567777655432 1 11110 0 01133444444433 45677776642345555533 111000 0000000
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 934 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 934 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
.......++..-+++.+|++.++ ...+.|....+..+.....- .....++++. ..+|+.-. +..|.|+++.+++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~ 273 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGE 273 (302)
T ss_pred ccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEc-CCcEEEEECCCCc
Confidence 00002333333445555555443 34444444212211111111 4455677776 45666655 5559999999999
Q ss_pred eeEeeC
Q 001319 1014 LRCYIA 1019 (1101)
Q Consensus 1014 ~~~~~~ 1019 (1101)
++..+.
T Consensus 274 l~q~i~ 279 (302)
T smart00036 274 LLQELA 279 (302)
T ss_pred eEEEEe
Confidence 888776
No 481
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.38 E-value=21 Score=44.64 Aligned_cols=147 Identities=12% Similarity=0.219 Sum_probs=92.7
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEEc--------CCCCEEEEEeCCCcEEEEECCCCccccceEE--e-ecCC
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS--------TSLNILVSSGADAQLCVWSIDTWEKRKSVTI--H-IPAG 933 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~--~-~~~~ 933 (1101)
+.|+.+.+|+..++.....+.+-+..|..+..- |.=++|...+.--.|.++-+.-.+....... . ....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 358899999999987788888777777777653 2224444444455577776543322211111 0 0011
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCeEE--EEEcCCc---e---ee-----------eE-eccCCCCCCCEEEEEEccCCC
Q 001319 934 KTPTGDTRVQFNADQVRMLVVHETQLA--IYDASKM---E---RI-----------RQ-WTPQDALSAPISCAVYSCNSQ 993 (1101)
Q Consensus 934 ~~~~~v~~~~~s~d~~~l~~~~d~~i~--v~d~~~~---~---~~-----------~~-~~~~~~h~~~v~~v~~s~dg~ 993 (1101)
..+..+.++....+|+.+.+|.||.|+ +|....+ + .+ .. +.....+..+|..+++...-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 112568888888999999999988443 2222211 0 00 00 111113477999999988888
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 001319 994 LVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 994 ~l~s~~~dg~i~vwd~~~ 1011 (1101)
.|.+-++.|+|++||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 899999999999999987
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=15 Score=46.33 Aligned_cols=197 Identities=10% Similarity=0.131 Sum_probs=93.8
Q ss_pred CCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
.......++|+|.-.++|.+. .|.|+++-...-+.......... .+..+.+-. ..........+..+.+|.......
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccce
Confidence 344566789999999999998 89999997654333322221111 222222222 122233344555666666543221
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-----------------------------ec
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-----------------------------IP 931 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-----------------------------~~ 931 (1101)
+. +...+++....+--.+ .-+ ..+.+++||+.-.......... ..
T Consensus 113 ~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 113 VF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred ee----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Confidence 11 1112222221111112 222 4455555554321111000000 00
Q ss_pred CCCC-------CCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 932 AGKT-------PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 932 ~~~~-------~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
..+. ...+.+..+......+..+..+.+.+|+.........+... ....+.++..++++..||.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 187 LPDAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN--------GQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred cccccccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc--------cccCccCCceEEEEEecCCE
Confidence 0000 02233333333344444444455555555443333333322 11118899999999999999
Q ss_pred EEEeCCCCce
Q 001319 1005 GVFDADTLRL 1014 (1101)
Q Consensus 1005 ~vwd~~~~~~ 1014 (1101)
..||...+..
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999999866
No 483
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.85 E-value=4 Score=48.08 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=77.5
Q ss_pred EEEEEEecC-CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc--cCCCEEEE
Q 001319 347 VISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVGV 423 (1101)
Q Consensus 347 V~~v~fspd-g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s--pdg~~las 423 (1101)
|+.|....= |..+|+.+..||.|.+|.+++=-......-.-.+........+..........++++++. ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 444443332 234677888999999998643110000000000000000000111122245589999999 88999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCC----ceEEEEecCCceEEEEE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK----LLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~----~~~l~s~~~d~~v~iwd 481 (1101)
+++...|.||-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|+
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 99999898887765321111111123667899999988651 13688899999988877
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=86.76 E-value=88 Score=38.46 Aligned_cols=173 Identities=13% Similarity=0.145 Sum_probs=93.6
Q ss_pred eEEEEECCCceEEEEeeCCCC----CeeEEEEecCCCC-EEEEEe-----------CCCcEEEEEeec-ceEEEeec--c
Q 001319 826 KISLFNMMTFKVMTTFMSPPP----ASTFLAFHPQDNN-IIAIGT-----------EDSTIHIYNVRV-DEVKSKLK--G 886 (1101)
Q Consensus 826 ~i~vwd~~~~~~~~~~~~~~~----~i~~l~~s~~~~~-~la~g~-----------~dg~v~iwd~~~-~~~~~~~~--~ 886 (1101)
.|+++|..+++.+..+....+ .+..+.|+..+.. ++++|. .+|.++.|++.. |+.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 378888888777666553222 3666777663333 455544 345578887754 33222221 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeE--EEEE
Q 001319 887 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL--AIYD 963 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i--~v~d 963 (1101)
-.++|. +..|-+.++. ++....+++||+...+.+....... .+..|+.+.+ .+.++++|+ ...+ ..|+
T Consensus 934 ~~~~v~--Ai~~f~~~~L-agvG~~l~~YdlG~K~lLRk~e~k~----~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVL-AGVGRFLRLYDLGKKKLLRKCELKF----IPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCccce--EEeccCCEEE-EecccEEEEeeCChHHHHhhhhhcc----CceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence 223443 4455555544 4455679999998876655443332 1133444433 455667765 2233 3444
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
-...+.+.-.... -...|+++.+- |-..+|.|..-|.+.+-.+.
T Consensus 1005 ~~~n~l~~fadD~--~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDP--VPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCCC--ccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 4444433332221 14556666665 44457777777777776554
No 485
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=86.57 E-value=72 Score=37.27 Aligned_cols=253 Identities=12% Similarity=0.077 Sum_probs=129.4
Q ss_pred CEeEEEecCCCCeEEEEcC--C----eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCc---EEEEEee
Q 001319 806 AVPCIALSKNDSYVMSATG--G----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST---IHIYNVR 876 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~d--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~---v~iwd~~ 876 (1101)
.+-.++.|||++++|.+-| | ++++-|+.+++.+.... .+....++|.+ |++.|.....|-. =++|.-.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~-d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAA-DGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEec-CCCeEEEEEEcCCCCcceEEEEe
Confidence 4567889999999998853 2 39999999988765432 23466789999 6766665554432 2344332
Q ss_pred cce----EEEeeccCCC-CeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC
Q 001319 877 VDE----VKSKLKGHQK-RITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 877 ~~~----~~~~~~~h~~-~V~~l~~s~d~~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
-+. -...+..... --.++--+.+.++|+....| ..+++.+.+..+...........++. ......+
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e------Y~~eh~~ 280 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE------YSVEHGG 280 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE------EeeeecC
Confidence 221 1111211111 12233334455666654433 45777777765544333333222211 1112224
Q ss_pred CEEEE-Ee-CC-eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeEeeCCCC
Q 001319 949 VRMLV-VH-ET-QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG---NIGVFDADTLRLRCYIAPST 1022 (1101)
Q Consensus 949 ~~l~~-~~-d~-~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~ 1022 (1101)
.++.+ .. ++ ..+|+..........+...-.|...+.--.|+--..+|+....++ .|++++.++++... +.
T Consensus 281 d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~--- 356 (682)
T COG1770 281 DRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IA--- 356 (682)
T ss_pred cEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EE---
Confidence 44443 22 33 455555433111111222122355555566666677777655433 58889998887655 22
Q ss_pred cCCCcccCCCCccceEEEEEecC-C-CCEEEEEE---CCCeEEEEeCCCCCCccccCCCCCC
Q 001319 1023 YLSPSVLNGSQTVYPLVVAAHPL-E-PNQFAIGL---TDGSVKVMEPSESEGKWGVSPPVDN 1079 (1101)
Q Consensus 1023 ~~~~~~~~h~~~~~~~~l~~~p~-d-~~~l~s~~---~Dg~v~iWd~~~~~~~~~~~~~~~~ 1079 (1101)
..+..+.+.+..++. + ..+.++.+ .-.++.=+|+.+++.+.--..++.+
T Consensus 357 --------f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~ 410 (682)
T COG1770 357 --------FDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG 410 (682)
T ss_pred --------ecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC
Confidence 123333344444332 1 12222222 2356777889999855544455544
No 486
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.44 E-value=21 Score=39.52 Aligned_cols=149 Identities=8% Similarity=0.086 Sum_probs=89.3
Q ss_pred EEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC------CccEEEEeccCCeEEEEecCCCC
Q 001319 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYDTMG 529 (1101)
Q Consensus 457 l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~------~~~~l~s~~~d~~i~~wd~~~~~ 529 (1101)
+-...+.+.+++..|+....++--| ..|+.+..+.-|... -+.+.|.. +.+.|+ |-.+..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 3344444445666777777888888 889999888877765 34444421 123444 4445555445554444
Q ss_pred eeeeccCCCCce-----EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 530 SRVDYDAPGHWC-----TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 530 ~~~~~~~~~~~v-----~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
............ .+..- ...-+++.++. .|-|++||.-..+....+++... .|..+..+.+|+++++.+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhcccccccccccc-ccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 222222111212 22222 23457888875 77799999765555555666555 677788999999988877
Q ss_pred CCCcEEEEECC
Q 001319 605 EDSQIKFWDMD 615 (1101)
Q Consensus 605 ~dg~i~iwd~~ 615 (1101)
.. .+.+-|+.
T Consensus 623 k~-yllL~d~~ 632 (776)
T COG5167 623 KN-YLLLTDVP 632 (776)
T ss_pred cc-eEEEEecc
Confidence 54 56666653
No 487
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.31 E-value=2.4 Score=42.80 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=52.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccce-EE-eecCC------CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCc
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSV-TI-HIPAG------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~-~~-~~~~~------~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 967 (1101)
+..++++|++.+.+|.+++||+.+++..... .+ ..... .....|..+.++.+|.-+++-+++..+.|+.+=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 3456889999999999999999998765333 11 11110 2226778888888998888877888888887644
Q ss_pred ee
Q 001319 968 ER 969 (1101)
Q Consensus 968 ~~ 969 (1101)
.-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 33
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.07 E-value=67 Score=36.45 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=38.9
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
.-+..+.|+|.|||+ +|++--..|.|++++-.++.......+ +......-.+....|+|+||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 345789999999997 666543369999998655432110000 100011136788999999984
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.87 E-value=1e+02 Score=38.32 Aligned_cols=159 Identities=12% Similarity=0.132 Sum_probs=101.7
Q ss_pred CCCCEeEEEec---C----CCCeEEEEcCCeEEEEECC------C---------ceEEEEeeC---CCCCeeEEEEecCC
Q 001319 803 LEEAVPCIALS---K----NDSYVMSATGGKISLFNMM------T---------FKVMTTFMS---PPPASTFLAFHPQD 857 (1101)
Q Consensus 803 ~~~~v~~~~~s---~----dg~~la~~~dg~i~vwd~~------~---------~~~~~~~~~---~~~~i~~l~~s~~~ 857 (1101)
...+|..|+|+ . ..++|++-....+.|+... . ..++..+.. -..+...++|.|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 66788888888 2 2358888778888888721 1 122333332 23457789999988
Q ss_pred CCEEEEEeCCCcEEEEEeecce-----EEEeeccCCCC----------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 001319 858 NNIIAIGTEDSTIHIYNVRVDE-----VKSKLKGHQKR----------ITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922 (1101)
Q Consensus 858 ~~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~~~----------V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~ 922 (1101)
...||+.+..|...||++..+. .......+.+. -..+.|.++-+.|+.++.. .+.++|+.+...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 8899999999999999993211 11111112222 3478898888888877754 589999998765
Q ss_pred ccceEEeecCCCCCCCcceEEEcCCC-CEEEEEeCCeEEEEEcCC
Q 001319 923 RKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVVHETQLAIYDASK 966 (1101)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~d~~i~v~d~~~ 966 (1101)
... .........+..+.-+++. .++++-....|...++..
T Consensus 237 ~~~----l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY----LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch----hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 332 1122222677788888872 233344457777777766
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.66 E-value=73 Score=37.62 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=37.9
Q ss_pred CCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEE
Q 001319 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 862 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 862 (1101)
...+..++|+-....++.+..+.+.+|-..+..-.......-..+.-+.|+|.....|.
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 34455667776666777777889999987765433333333456788999994444443
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.53 E-value=50 Score=38.88 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=70.2
Q ss_pred EEEecCCCCEEEEEeCC----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCc
Q 001319 851 LAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWE 921 (1101)
Q Consensus 851 l~~s~~~~~~la~g~~d----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~ 921 (1101)
++|-. |..+.+++... ..+++|... |++-..-....+-=..++|-|.|..++|-+.||. |.++.-..-+
T Consensus 207 i~wrg-D~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 207 IFWRG-DTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEcc-Ccceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence 44444 55555555422 345666532 2211111111222234899999999999886653 5565544311
Q ss_pred cccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCC
Q 001319 922 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992 (1101)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 992 (1101)
. ..+.... +.. ......+|.-....++++..+.+.+|...+.......... -..+.-+.|.|..
T Consensus 285 H-Gef~lr~--~~d-Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~---ip~~s~vkwhpe~ 348 (1243)
T COG5290 285 H-GEFDLRV--GCD-EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQ---IPGISYVKWHPEE 348 (1243)
T ss_pred c-CCccccC--Cch-hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeec---CCCcceeeecccc
Confidence 0 0011111 111 3455667776666677777889999998876554333322 3345566666643
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.60 E-value=68 Score=35.25 Aligned_cols=197 Identities=11% Similarity=0.171 Sum_probs=103.5
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEec---CCCCE--EEEEe-CC---CcEEEEEeec--ceEEEe
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP---QDNNI--IAIGT-ED---STIHIYNVRV--DEVKSK 883 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~~~--la~g~-~d---g~v~iwd~~~--~~~~~~ 883 (1101)
..+++... .+-+.+||++ |+.+..+. .+....+..-. -+++. ||+++ .+ .+|++|.+.. +.+ ..
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~ 143 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TD 143 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eE
Confidence 33444444 6789999996 55555554 23444333321 02322 34444 32 4799998873 433 33
Q ss_pred ecc-------CCCCeeEEEEc--C-CCC-EEEEEeCCCcEEEEECCCC-c-cccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 884 LKG-------HQKRITGLAFS--T-SLN-ILVSSGADAQLCVWSIDTW-E-KRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 884 ~~~-------h~~~V~~l~~s--~-d~~-~l~s~s~Dg~v~lwd~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
+.. -...++.+|+- + +|. +++..+.+|.+..|.+... . .+....++.+... ..+..+........
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQPEGCVVDDETGR 221 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-EEEEEEETTTTE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--CcceEEEEecccCC
Confidence 221 12347778874 3 344 6667788999988887532 1 1122222222221 56788889988888
Q ss_pred EEEEe-CCeEEEEEcC--C---ceeeeEeccCCCCCCCEEEEEEc--cCCC-EEEEEe-CCCcEEEEeCCC-CceeEeeC
Q 001319 951 MLVVH-ETQLAIYDAS--K---MERIRQWTPQDALSAPISCAVYS--CNSQ-LVFATF-CDGNIGVFDADT-LRLRCYIA 1019 (1101)
Q Consensus 951 l~~~~-d~~i~v~d~~--~---~~~~~~~~~~~~h~~~v~~v~~s--~dg~-~l~s~~-~dg~i~vwd~~~-~~~~~~~~ 1019 (1101)
|.++. +..|.-|+.+ . +..+..... ......|-.|++- .+|+ ||++++ .+++..||+... ...+..+.
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccc-cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 88887 6677777765 1 222222222 2225667777764 3443 555544 677899999886 34444443
No 493
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.50 E-value=20 Score=45.34 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
+...+.+..+......+.... .+.+.+|+.........+...... ...++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCC
Confidence 334455555544444444432 456666765554444444433221 177899999999999999999998
Q ss_pred Cee
Q 001319 617 VNI 619 (1101)
Q Consensus 617 ~~~ 619 (1101)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
No 494
>PLN02193 nitrile-specifier protein
Probab=84.49 E-value=86 Score=36.32 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC-------CcEEEEEeecceEEEe----eccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001319 857 DNNIIAIGTED-------STIHIYNVRVDEVKSK----LKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTW 920 (1101)
Q Consensus 857 ~~~~la~g~~d-------g~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~lwd~~~~ 920 (1101)
++.+++.|+.+ ..+..||+.+.+=... -..........+..-++++.+.|+.+ ..+..+|+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Q ss_pred ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE
Q 001319 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 994 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 994 (1101)
+ ...+............+.+..-++++.+.|. ...+..||+.+.+-...-.............+..-+++.
T Consensus 255 ~---W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gki 331 (470)
T PLN02193 255 E---WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKV 331 (470)
T ss_pred E---EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcE
Q ss_pred EEEEeCC----CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCC-------------
Q 001319 995 VFATFCD----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG------------- 1057 (1101)
Q Consensus 995 l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg------------- 1057 (1101)
.+.++.+ ..+.+||+.+.+. ..+......+.....|..... ++.+++.|+.+.
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~---------~~~iyv~GG~~~~~~~~~~~~~~~~ 401 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAV---------GKHIVIFGGEIAMDPLAHVGPGQLT 401 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEE---------CCEEEEECCccCCccccccCcccee
Q ss_pred -eEEEEeCCCCC-CccccCCCCCCCCCCccccCCC
Q 001319 1058 -SVKVMEPSESE-GKWGVSPPVDNGILNSRTTSSS 1090 (1101)
Q Consensus 1058 -~v~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1090 (1101)
.+.++|+.+.+ ..+......+..+.+|+-.+.+
T Consensus 402 ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~ 436 (470)
T PLN02193 402 DGTFALDTETLQWERLDKFGEEEETPSSRGWTAST 436 (470)
T ss_pred ccEEEEEcCcCEEEEcccCCCCCCCCCCCccccce
No 495
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.37 E-value=70 Score=35.17 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=90.3
Q ss_pred eEEEecCCCCeEEEEcCCeEEEEECCCc--e-EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE--
Q 001319 808 PCIALSKNDSYVMSATGGKISLFNMMTF--K-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-- 882 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~dg~i~vwd~~~~--~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~-- 882 (1101)
+.+-|...++.+.+...|.+.-|..... . ++..-....++|.++.||+ |.+.||+--.+.+|.+++....+...
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHH
Confidence 3455555455554444444444544321 1 1222223456899999999 99999999999999999985443322
Q ss_pred --eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CC
Q 001319 883 --KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ET 957 (1101)
Q Consensus 883 --~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~ 957 (1101)
+.+..+..|....|+.. .-+|.....| +.+|.+...+. .++....+. ..+.-..|.++...++.+. .+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr----slRlVks~~-~nvnWy~yc~et~v~LL~t~~~~n 177 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR----SLRLVKSHN-LNVNWYMYCPETAVILLSTTVLEN 177 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh----hhhhhhhcc-cCccEEEEccccceEeeecccccc
Confidence 22334456889999866 5666666555 77887765321 111122222 5677888888887765532 34
Q ss_pred eEEEEEcCCc
Q 001319 958 QLAIYDASKM 967 (1101)
Q Consensus 958 ~i~v~d~~~~ 967 (1101)
.+.=+.+.++
T Consensus 178 ~lnpf~~~~~ 187 (657)
T KOG2377|consen 178 VLNPFHFRAG 187 (657)
T ss_pred ccccEEEeec
Confidence 4444444433
No 496
>PLN02153 epithiospecifier protein
Probab=84.36 E-value=70 Score=35.20 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=90.1
Q ss_pred CCCeEEEEc-C-------CeEEEEECCCceEEEEee--C-CCC---CeeEEEEecCCCCEEEEEeCC-----CcEEEEEe
Q 001319 815 NDSYVMSAT-G-------GKISLFNMMTFKVMTTFM--S-PPP---ASTFLAFHPQDNNIIAIGTED-----STIHIYNV 875 (1101)
Q Consensus 815 dg~~la~~~-d-------g~i~vwd~~~~~~~~~~~--~-~~~---~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~ 875 (1101)
++++++.|+ + ..+.+||+.+.+-..... . ... ....+++ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 455666554 2 247888887653322111 1 111 1122233 56788888754 35778888
Q ss_pred ecceE--EEeecc---CCCCeeEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 876 RVDEV--KSKLKG---HQKRITGLAFSTSLNILVSSGAD-----------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 876 ~~~~~--~~~~~~---h~~~V~~l~~s~d~~~l~s~s~D-----------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
.+.+= +..+.. ...+....+..-+++..+.|+.+ ..|.+||..+.+-....... .......-
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~--~~~~~r~~ 186 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG--ENFEKRGG 186 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC--CCCCCCCc
Confidence 76532 222210 11112222233456777777754 24778888775432211100 00000111
Q ss_pred ceEEEcCCCCEEEEEe--------------CCeEEEEEcCCceeeeEeccC--CCCCCCEEEEEEccCCCEEEEEeCC--
Q 001319 940 TRVQFNADQVRMLVVH--------------ETQLAIYDASKMERIRQWTPQ--DALSAPISCAVYSCNSQLVFATFCD-- 1001 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~~~--------------d~~i~v~d~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~d-- 1001 (1101)
..++ .-+++..+++. ...+.+||..+.+-...-... ........++ .-++++++.|+..
T Consensus 187 ~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~--~~~~~iyv~GG~~~~ 263 (341)
T PLN02153 187 AGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA--VVGKYIIIFGGEVWP 263 (341)
T ss_pred ceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE--EECCEEEEECcccCC
Confidence 1222 23455555432 145888998876543321110 0001112222 2357777777742
Q ss_pred ------------CcEEEEeCCCCcee
Q 001319 1002 ------------GNIGVFDADTLRLR 1015 (1101)
Q Consensus 1002 ------------g~i~vwd~~~~~~~ 1015 (1101)
..+..+|..+..-.
T Consensus 264 ~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 264 DLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ccccccccccccccEEEEEcCccEEE
Confidence 25788888776543
No 497
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.05 E-value=17 Score=40.21 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=89.5
Q ss_pred EEEecCCCCEEE-EEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC--------CEEEEEeCCCcEEEEECCC-C
Q 001319 851 LAFHPQDNNIIA-IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL--------NILVSSGADAQLCVWSIDT-W 920 (1101)
Q Consensus 851 l~~s~~~~~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~--------~~l~s~s~Dg~v~lwd~~~-~ 920 (1101)
+..+.++..+|. .|.....++-.|+..|+.+..+.-|... -+.|.|+. +.|+ |-.+..|.--|..- |
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333333555554 4555567888899999999999888665 47787753 3444 44444444444332 2
Q ss_pred ccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
..+.........+. ....+..-... .++++ +..|.|++||--.......++.. ...|..+..+.+|++|++.+
T Consensus 549 NKi~v~esKdY~tK--n~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTK--NKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhcccc--ccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee
Confidence 11111111111111 22223333333 45555 56899999997655554455544 78899999999999988776
Q ss_pred CCCcEEEEeCCC
Q 001319 1000 CDGNIGVFDADT 1011 (1101)
Q Consensus 1000 ~dg~i~vwd~~~ 1011 (1101)
..++.+-|+.-
T Consensus 623 -k~yllL~d~~i 633 (776)
T COG5167 623 -KNYLLLTDVPI 633 (776)
T ss_pred -cceEEEEeccc
Confidence 45677777653
No 498
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.97 E-value=4.5 Score=40.91 Aligned_cols=69 Identities=7% Similarity=0.074 Sum_probs=49.1
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCcccccce----eee-------cccCcEEEEEEecCCCceEEEEecCCceEEEEEc
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS----QID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~----~l~-------~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~ 482 (1101)
+..++.+|++.+.+|.+++||+.+++.+.... .+. .....|..+.++.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 44579999999999999999999987654321 122 3556788888888887 455544 567788884
Q ss_pred CCc
Q 001319 483 SGR 485 (1101)
Q Consensus 483 ~~~ 485 (1101)
+-.
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 433
No 499
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.47 E-value=26 Score=40.01 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 981 APISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 981 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999988889999999999999999985
No 500
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.67 E-value=78 Score=34.48 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CccEEEEeccC-----CeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 507 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+..-+++..+.|+.+......+..||+.+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 34566666642 356777766543221111111 112223334466666776643221234678898876643
Done!