Query 001319
Match_columns 1101
No_of_seqs 914 out of 4503
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 22:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.6E-68 1.2E-72 641.6 80.6 565 339-1063 11-577 (577)
2 1nr0_A Actin interacting prote 100.0 9.5E-66 3.3E-70 620.1 72.1 576 343-1065 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 3.8E-63 1.3E-67 597.5 77.0 547 327-1010 43-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 9.5E-62 3.3E-66 585.5 75.8 533 327-1008 42-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-62 4E-67 648.4 67.5 617 339-1065 610-1248(1249)
6 1pgu_A Actin interacting prote 100.0 1.7E-59 5.9E-64 571.2 65.5 558 342-1066 16-614 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-58 1.7E-62 604.2 65.8 568 401-1069 610-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 2E-57 6.9E-62 565.9 67.4 602 337-1020 10-792 (902)
9 1pgu_A Actin interacting prote 100.0 6E-56 2E-60 539.9 67.4 536 327-1011 43-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-55 5.6E-60 548.7 59.1 592 402-1076 13-795 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 7E-47 2.4E-51 475.9 58.9 557 341-1011 10-601 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-45 4E-50 464.7 57.1 465 400-1007 7-501 (814)
13 1vyh_C Platelet-activating fac 100.0 1.1E-44 3.8E-49 413.4 39.2 284 341-658 105-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 9.2E-40 3.1E-44 358.9 40.0 286 341-658 29-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 3.3E-39 1.1E-43 358.6 43.2 286 341-657 52-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 6.1E-39 2.1E-43 358.0 43.1 293 337-657 56-354 (354)
17 3frx_A Guanine nucleotide-bind 100.0 4E-39 1.4E-43 354.2 40.7 295 341-661 14-318 (319)
18 2ynn_A Coatomer subunit beta'; 100.0 9.8E-39 3.4E-43 348.6 39.1 289 338-660 6-302 (304)
19 1vyh_C Platelet-activating fac 100.0 1E-38 3.6E-43 364.1 39.2 286 401-766 103-409 (410)
20 3iz6_a 40S ribosomal protein R 100.0 5.3E-39 1.8E-43 362.9 35.7 300 336-661 57-376 (380)
21 3ow8_A WD repeat-containing pr 100.0 3.4E-38 1.2E-42 346.3 39.8 287 402-766 28-319 (321)
22 1got_B GT-beta; complex (GTP-b 100.0 8.1E-38 2.8E-42 347.4 41.0 286 401-765 50-340 (340)
23 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-38 1.8E-42 349.4 39.3 296 341-662 12-337 (345)
24 4g56_B MGC81050 protein; prote 100.0 2.4E-38 8.2E-43 353.4 36.5 292 342-661 40-344 (357)
25 4gqb_B Methylosome protein 50; 100.0 4.8E-38 1.7E-42 347.4 37.8 297 342-661 28-332 (344)
26 1r5m_A SIR4-interacting protei 100.0 1.4E-37 4.9E-42 358.8 42.0 327 403-918 42-424 (425)
27 2ynn_A Coatomer subunit beta'; 100.0 3.4E-37 1.2E-41 336.3 39.6 249 400-661 7-260 (304)
28 1r5m_A SIR4-interacting protei 100.0 3.9E-37 1.3E-41 355.1 40.1 357 338-767 39-424 (425)
29 4ery_A WD repeat-containing pr 100.0 1.8E-36 6.2E-41 332.9 43.3 286 341-659 20-311 (312)
30 2pbi_B Guanine nucleotide-bind 100.0 8.6E-37 3E-41 340.6 41.0 287 401-765 59-354 (354)
31 4gqb_B Methylosome protein 50; 100.0 3.6E-37 1.2E-41 340.5 36.7 297 735-1068 28-333 (344)
32 2pm9_A Protein WEB1, protein t 100.0 1.6E-38 5.4E-43 365.6 26.0 292 343-661 11-338 (416)
33 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-36 9.5E-41 335.6 42.8 326 575-1069 6-338 (345)
34 4g56_B MGC81050 protein; prote 100.0 3.3E-37 1.1E-41 344.2 35.2 292 734-1068 39-345 (357)
35 1erj_A Transcriptional repress 100.0 1E-36 3.5E-41 345.9 39.6 308 337-661 57-390 (393)
36 3iz6_a 40S ribosomal protein R 100.0 6.8E-37 2.3E-41 345.6 37.9 320 565-1013 47-377 (380)
37 2xzm_R RACK1; ribosome, transl 100.0 1.2E-36 4.2E-41 338.5 39.4 296 340-661 17-341 (343)
38 1k32_A Tricorn protease; prote 100.0 1.3E-35 4.6E-40 380.1 54.2 554 343-1068 13-639 (1045)
39 2pm9_A Protein WEB1, protein t 100.0 5.8E-38 2E-42 361.0 28.2 336 406-920 12-415 (416)
40 2hes_X YDR267CP; beta-propelle 100.0 1.8E-36 6E-41 334.9 38.5 290 341-660 11-328 (330)
41 3frx_A Guanine nucleotide-bind 100.0 4.6E-36 1.6E-40 329.7 41.1 296 401-768 12-317 (319)
42 4aow_A Guanine nucleotide-bind 100.0 5.1E-36 1.7E-40 334.2 40.2 299 337-661 30-338 (340)
43 4ery_A WD repeat-containing pr 100.0 1.3E-35 4.5E-40 326.0 42.3 289 401-766 18-310 (312)
44 1gxr_A ESG1, transducin-like e 100.0 6.2E-36 2.1E-40 333.0 38.3 323 343-766 8-335 (337)
45 3vl1_A 26S proteasome regulato 100.0 6.9E-36 2.3E-40 344.0 36.8 344 407-919 57-419 (420)
46 3vl1_A 26S proteasome regulato 100.0 4.8E-36 1.6E-40 345.3 32.9 332 345-767 57-418 (420)
47 2hes_X YDR267CP; beta-propelle 100.0 1.3E-34 4.4E-39 319.9 42.5 307 573-1011 3-328 (330)
48 1gxr_A ESG1, transducin-like e 100.0 3.8E-35 1.3E-39 326.7 38.3 320 405-876 8-336 (337)
49 2xzm_R RACK1; ribosome, transl 100.0 1.9E-34 6.6E-39 320.8 41.8 299 401-768 16-340 (343)
50 3dm0_A Maltose-binding peripla 100.0 4.1E-35 1.4E-39 359.6 39.8 294 340-659 378-692 (694)
51 3gre_A Serine/threonine-protei 100.0 4.9E-36 1.7E-40 347.0 29.4 382 351-916 34-437 (437)
52 3ei3_B DNA damage-binding prot 100.0 7.7E-35 2.6E-39 330.4 36.7 291 340-660 69-382 (383)
53 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-36 1.4E-40 348.5 25.3 343 405-919 132-517 (524)
54 1erj_A Transcriptional repress 100.0 3.6E-34 1.2E-38 325.0 40.5 303 492-919 62-389 (393)
55 2j04_B YDR362CP, TAU91; beta p 100.0 4E-36 1.4E-40 348.6 24.6 342 334-769 123-518 (524)
56 1k32_A Tricorn protease; prote 100.0 1.5E-33 5.1E-38 361.1 50.2 531 327-1013 35-639 (1045)
57 3v7d_B Cell division control p 100.0 2.6E-33 8.8E-38 327.0 45.9 292 327-661 104-422 (464)
58 3zwl_B Eukaryotic translation 100.0 1.1E-33 3.7E-38 319.4 40.9 289 337-661 25-347 (369)
59 1sq9_A Antiviral protein SKI8; 100.0 4.4E-34 1.5E-38 326.2 37.3 292 341-661 13-396 (397)
60 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-33 1.5E-37 322.7 45.8 323 339-768 113-442 (445)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-33 1.1E-37 323.8 43.4 316 446-919 113-442 (445)
62 4e54_B DNA damage-binding prot 100.0 1E-34 3.4E-39 334.7 29.4 294 341-661 116-431 (435)
63 3ei3_B DNA damage-binding prot 100.0 1.7E-33 5.8E-38 319.3 38.4 316 568-1066 57-382 (383)
64 4aow_A Guanine nucleotide-bind 100.0 7.4E-33 2.5E-37 308.6 42.2 291 444-879 31-339 (340)
65 3odt_A Protein DOA1; ubiquitin 100.0 3.8E-33 1.3E-37 306.8 39.3 287 336-661 9-297 (313)
66 1k8k_C P40, ARP2/3 complex 41 100.0 1E-33 3.6E-38 319.9 35.3 292 343-666 7-367 (372)
67 3k26_A Polycomb protein EED; W 100.0 3.3E-34 1.1E-38 323.2 30.8 290 342-659 16-365 (366)
68 3v7d_B Cell division control p 100.0 1.3E-32 4.3E-37 321.1 44.9 346 575-1008 112-460 (464)
69 3i2n_A WD repeat-containing pr 100.0 6.7E-34 2.3E-38 319.5 32.8 287 342-661 16-354 (357)
70 4h5i_A Guanine nucleotide-exch 100.0 2.1E-33 7.3E-38 314.1 32.8 300 343-661 13-344 (365)
71 2j04_A TAU60, YPL007P, hypothe 100.0 2.4E-34 8.1E-39 321.5 24.4 260 344-659 15-296 (588)
72 4a11_B DNA excision repair pro 100.0 1.7E-33 5.9E-38 322.6 32.2 350 563-1066 22-405 (408)
73 3zwl_B Eukaryotic translation 100.0 3.6E-32 1.2E-36 306.8 40.1 288 400-769 26-347 (369)
74 3dwl_C Actin-related protein 2 100.0 2.6E-34 8.7E-39 325.5 21.9 285 343-658 10-377 (377)
75 4a11_B DNA excision repair pro 100.0 1.9E-32 6.6E-37 313.9 36.9 369 364-919 20-405 (408)
76 3k26_A Polycomb protein EED; W 100.0 1.5E-33 5.2E-38 317.8 27.1 315 447-919 14-366 (366)
77 4e54_B DNA damage-binding prot 100.0 2.6E-33 9E-38 322.8 29.4 301 578-1014 113-433 (435)
78 3gre_A Serine/threonine-protei 100.0 7E-33 2.4E-37 320.5 32.9 298 333-657 50-437 (437)
79 4aez_A CDC20, WD repeat-contai 100.0 2.1E-32 7.1E-37 311.9 35.8 292 338-662 85-382 (401)
80 3dm0_A Maltose-binding peripla 100.0 3.3E-32 1.1E-36 333.8 39.7 307 401-767 377-692 (694)
81 2pm7_B Protein transport prote 100.0 2.1E-32 7.2E-37 297.3 33.4 251 401-659 4-284 (297)
82 4gga_A P55CDC, cell division c 100.0 5.7E-32 2E-36 310.2 38.9 281 346-661 107-396 (420)
83 1sq9_A Antiviral protein SKI8; 100.0 2.6E-32 8.8E-37 311.5 35.2 313 400-768 10-395 (397)
84 2pm7_B Protein transport prote 100.0 4.6E-32 1.6E-36 294.6 34.3 250 340-615 5-284 (297)
85 1k8k_C P40, ARP2/3 complex 41 100.0 1.2E-31 4.1E-36 303.0 37.2 244 402-660 4-274 (372)
86 2j04_A TAU60, YPL007P, hypothe 100.0 9E-34 3.1E-38 316.8 19.2 315 405-865 14-349 (588)
87 3dwl_C Actin-related protein 2 100.0 3.7E-33 1.3E-37 315.9 23.9 242 402-659 7-280 (377)
88 3dw8_B Serine/threonine-protei 100.0 2.6E-32 8.7E-37 317.1 31.3 298 341-658 25-444 (447)
89 4ggc_A P55CDC, cell division c 100.0 5.1E-31 1.7E-35 290.5 38.9 281 347-661 28-316 (318)
90 3odt_A Protein DOA1; ubiquitin 100.0 4.4E-31 1.5E-35 290.3 38.2 290 485-926 9-303 (313)
91 4h5i_A Guanine nucleotide-exch 100.0 7.3E-32 2.5E-36 301.7 32.3 293 451-920 14-344 (365)
92 3i2n_A WD repeat-containing pr 100.0 1.5E-31 5.2E-36 300.2 33.0 311 400-768 12-353 (357)
93 1yfq_A Cell cycle arrest prote 100.0 3.8E-31 1.3E-35 295.0 33.6 279 342-656 9-320 (342)
94 3bg1_A Protein SEC13 homolog; 100.0 8.7E-32 3E-36 295.1 26.5 249 341-615 10-292 (316)
95 1p22_A F-BOX/WD-repeat protein 100.0 6.7E-31 2.3E-35 303.0 35.2 272 342-661 131-415 (435)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 2.2E-31 7.5E-36 303.8 30.4 295 346-661 36-343 (402)
97 3bg1_A Protein SEC13 homolog; 100.0 8.3E-32 2.8E-36 295.3 25.8 249 401-659 8-292 (316)
98 4aez_A CDC20, WD repeat-contai 100.0 2E-30 6.8E-35 295.5 36.7 281 740-1070 96-384 (401)
99 3mmy_A MRNA export factor; mRN 100.0 2E-30 6.7E-35 292.5 33.5 288 335-658 29-344 (368)
100 3dw8_B Serine/threonine-protei 100.0 3.5E-30 1.2E-34 299.0 36.3 248 404-661 26-374 (447)
101 4gga_A P55CDC, cell division c 100.0 3.2E-29 1.1E-33 287.3 41.8 284 738-1068 106-397 (420)
102 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-30 7.4E-35 289.7 30.0 297 340-661 7-338 (351)
103 4ggc_A P55CDC, cell division c 100.0 4.8E-29 1.6E-33 274.7 39.5 281 541-919 28-315 (318)
104 3jrp_A Fusion protein of prote 100.0 6E-30 2E-34 289.8 32.0 252 341-618 8-289 (379)
105 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-29 5.3E-34 282.7 34.6 211 400-617 5-250 (351)
106 1p22_A F-BOX/WD-repeat protein 100.0 3.6E-29 1.2E-33 288.5 35.8 282 403-769 130-415 (435)
107 1yfq_A Cell cycle arrest prote 100.0 2.5E-29 8.4E-34 280.3 33.0 248 402-661 7-283 (342)
108 3jrp_A Fusion protein of prote 100.0 1.6E-29 5.3E-34 286.4 31.5 253 401-661 6-288 (379)
109 3mmy_A MRNA export factor; mRN 100.0 6.2E-29 2.1E-33 280.2 33.7 299 480-921 24-348 (368)
110 2aq5_A Coronin-1A; WD40 repeat 100.0 3.4E-29 1.2E-33 285.6 30.1 246 408-661 36-300 (402)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-28 6.1E-33 283.9 35.4 299 345-661 5-392 (450)
112 1l0q_A Surface layer protein; 100.0 2.3E-27 7.7E-32 269.8 41.1 274 357-668 2-282 (391)
113 2w18_A PALB2, fancn, partner a 100.0 1.8E-27 6.3E-32 249.3 35.7 297 408-917 41-355 (356)
114 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-28 9.6E-33 271.8 30.5 276 342-661 17-337 (355)
115 3bws_A Protein LP49; two-domai 100.0 1.3E-26 4.4E-31 267.6 45.2 364 343-919 26-432 (433)
116 3jro_A Fusion protein of prote 100.0 5.1E-29 1.7E-33 306.6 26.2 252 341-618 6-287 (753)
117 3bws_A Protein LP49; two-domai 100.0 1.5E-27 5.1E-32 275.5 36.3 302 327-659 103-431 (433)
118 2w18_A PALB2, fancn, partner a 100.0 3.4E-27 1.2E-31 247.3 34.3 282 588-1009 42-355 (356)
119 2xyi_A Probable histone-bindin 100.0 3.7E-28 1.3E-32 279.1 29.7 265 337-617 121-411 (430)
120 1l0q_A Surface layer protein; 100.0 1.8E-26 6E-31 262.4 43.0 327 467-953 4-364 (391)
121 3vu4_A KMHSV2; beta-propeller 100.0 2E-27 6.8E-32 264.9 33.0 294 522-968 3-338 (355)
122 2xyi_A Probable histone-bindin 100.0 2.3E-27 7.8E-32 272.5 32.2 253 400-661 122-411 (430)
123 3jro_A Fusion protein of prote 100.0 5.4E-28 1.8E-32 297.5 28.1 253 401-661 4-286 (753)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-27 6.2E-32 264.6 29.0 279 458-919 43-333 (343)
125 4gq1_A NUP37; propeller, trans 100.0 8.8E-28 3E-32 272.0 25.9 303 345-659 16-388 (393)
126 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.2E-27 3.1E-31 269.6 34.5 242 407-658 5-337 (450)
127 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-27 3.8E-32 266.3 24.5 267 351-659 43-332 (343)
128 1nir_A Nitrite reductase; hemo 100.0 1.1E-25 3.8E-30 263.5 40.9 274 351-661 144-459 (543)
129 4gq1_A NUP37; propeller, trans 100.0 3.8E-27 1.3E-31 266.8 23.1 249 340-614 85-387 (393)
130 1nir_A Nitrite reductase; hemo 99.9 3.5E-25 1.2E-29 259.3 38.0 325 458-925 144-520 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.7E-24 5.7E-29 246.2 28.8 283 345-661 63-388 (415)
132 2ecf_A Dipeptidyl peptidase IV 99.9 1.8E-23 6.1E-28 259.2 35.6 303 344-660 36-413 (741)
133 2ecf_A Dipeptidyl peptidase IV 99.9 3.1E-23 1.1E-27 257.1 35.3 244 406-659 36-366 (741)
134 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-23 3.9E-28 260.2 26.5 287 346-661 18-394 (723)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.5E-23 1.9E-27 233.7 29.2 280 327-641 97-409 (415)
136 3u4y_A Uncharacterized protein 99.9 8.9E-22 3E-26 217.8 34.5 279 350-661 3-305 (331)
137 2z3z_A Dipeptidyl aminopeptida 99.9 7.9E-22 2.7E-26 242.8 36.6 237 409-659 28-341 (706)
138 3vgz_A Uncharacterized protein 99.9 2.2E-21 7.4E-26 216.9 34.3 276 342-651 38-335 (353)
139 1xfd_A DIP, dipeptidyl aminope 99.9 2.8E-22 9.6E-27 247.8 29.7 385 540-1018 18-450 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-21 4.3E-26 241.0 32.4 243 806-1068 122-437 (706)
141 2ojh_A Uncharacterized protein 99.9 1.4E-21 4.9E-26 212.1 26.0 257 362-651 17-293 (297)
142 1ri6_A Putative isomerase YBHE 99.9 1.2E-20 4.2E-25 209.8 33.1 244 803-1066 36-308 (343)
143 1ri6_A Putative isomerase YBHE 99.9 2.1E-20 7.2E-25 207.9 34.5 274 356-659 4-307 (343)
144 3u4y_A Uncharacterized protein 99.9 2.3E-20 7.8E-25 206.4 33.0 276 507-921 9-306 (331)
145 3vgz_A Uncharacterized protein 99.9 8.2E-20 2.8E-24 204.0 35.8 276 587-1002 42-335 (353)
146 1pby_B Quinohemoprotein amine 99.9 5.4E-20 1.8E-24 204.0 32.6 280 598-1020 2-319 (337)
147 3hfq_A Uncharacterized protein 99.9 1.8E-19 6E-24 200.6 33.3 249 803-1068 38-321 (347)
148 1pby_B Quinohemoprotein amine 99.9 2E-19 6.7E-24 199.4 33.4 302 509-888 2-321 (337)
149 3o4h_A Acylamino-acid-releasin 99.9 4.2E-20 1.4E-24 221.4 26.9 271 344-659 21-314 (582)
150 2ojh_A Uncharacterized protein 99.9 5.9E-20 2E-24 199.4 25.4 244 334-607 31-293 (297)
151 1z68_A Fibroblast activation p 99.8 3.7E-20 1.3E-24 228.2 23.5 277 349-660 20-391 (719)
152 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-18 5.7E-23 197.1 34.1 318 737-1066 36-405 (434)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 9.3E-19 3.2E-23 199.2 29.7 259 344-614 36-331 (434)
154 3hfq_A Uncharacterized protein 99.8 1.6E-18 5.6E-23 192.8 31.0 268 327-620 20-323 (347)
155 1z68_A Fibroblast activation p 99.8 6.3E-19 2.2E-23 217.3 28.8 331 411-842 20-451 (719)
156 4a5s_A Dipeptidyl peptidase 4 99.8 7E-18 2.4E-22 207.5 37.0 381 541-1019 19-457 (740)
157 4a5s_A Dipeptidyl peptidase 4 99.8 4.7E-18 1.6E-22 209.1 35.2 274 346-661 18-354 (740)
158 3pe7_A Oligogalacturonate lyas 99.8 2.7E-18 9.2E-23 194.5 30.6 297 337-659 23-381 (388)
159 3o4h_A Acylamino-acid-releasin 99.8 9.4E-19 3.2E-23 209.6 28.0 235 406-658 21-274 (582)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-18 8.2E-23 191.7 28.5 242 809-1073 4-332 (349)
161 3scy_A Hypothetical bacterial 99.8 7.8E-17 2.7E-21 180.2 40.4 312 548-989 11-360 (361)
162 3scy_A Hypothetical bacterial 99.8 3.4E-17 1.2E-21 183.1 35.9 271 359-659 15-336 (361)
163 1jmx_B Amine dehydrogenase; ox 99.8 7.8E-18 2.7E-22 187.5 30.6 293 507-887 10-335 (349)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-17 7E-22 184.8 28.8 248 805-1067 40-342 (365)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.7E-17 1.3E-21 182.8 30.2 246 406-661 39-342 (365)
166 3pe7_A Oligogalacturonate lyas 99.8 8.4E-18 2.9E-22 190.4 24.7 254 402-661 26-330 (388)
167 2oiz_A Aromatic amine dehydrog 99.8 4.9E-16 1.7E-20 172.4 34.8 312 507-901 14-360 (361)
168 2oiz_A Aromatic amine dehydrog 99.8 1.8E-16 6.2E-21 175.8 30.8 218 807-1045 110-358 (361)
169 3c5m_A Oligogalacturonate lyas 99.8 6.2E-17 2.1E-21 183.8 25.5 282 347-658 38-380 (396)
170 3c5m_A Oligogalacturonate lyas 99.7 9.4E-17 3.2E-21 182.3 24.2 319 567-1014 13-387 (396)
171 3azo_A Aminopeptidase; POP fam 99.7 8.9E-16 3E-20 187.2 32.3 250 400-658 17-321 (662)
172 1qks_A Cytochrome CD1 nitrite 99.7 7.5E-14 2.6E-18 162.3 43.5 274 357-661 167-478 (567)
173 1qks_A Cytochrome CD1 nitrite 99.7 1.3E-13 4.6E-18 160.2 44.5 331 505-975 164-547 (567)
174 3azo_A Aminopeptidase; POP fam 99.7 1.7E-15 5.7E-20 184.7 26.7 287 340-661 19-370 (662)
175 3fvz_A Peptidyl-glycine alpha- 99.7 8.9E-15 3E-19 160.5 29.2 245 345-616 24-322 (329)
176 1q7f_A NHL, brain tumor CG1071 99.7 4.5E-14 1.5E-18 151.8 33.1 245 343-617 28-281 (286)
177 4a2l_A BT_4663, two-component 99.7 1.4E-10 4.8E-15 143.7 69.1 585 344-1066 42-659 (795)
178 1q7f_A NHL, brain tumor CG1071 99.7 5.8E-14 2E-18 150.9 33.2 243 803-1067 28-281 (286)
179 2gop_A Trilobed protease; beta 99.7 7.5E-15 2.6E-19 163.1 27.0 262 345-659 15-330 (347)
180 4a2l_A BT_4663, two-component 99.7 4.2E-11 1.4E-15 148.4 63.5 542 406-1068 42-616 (795)
181 3fvz_A Peptidyl-glycine alpha- 99.7 1.8E-14 6.1E-19 158.1 28.7 252 803-1067 22-323 (329)
182 2dg1_A DRP35, lactonase; beta 99.6 1.2E-13 4.2E-18 152.2 29.2 272 345-651 6-301 (333)
183 3e5z_A Putative gluconolactona 99.6 3.3E-13 1.1E-17 145.8 31.6 244 340-619 23-289 (296)
184 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.8E-18 168.4 31.9 249 403-662 121-416 (710)
185 2gop_A Trilobed protease; beta 99.6 2.8E-13 9.7E-18 150.3 30.1 243 517-918 42-330 (347)
186 3v9f_A Two-component system se 99.6 4E-09 1.4E-13 130.4 69.7 594 344-1066 18-656 (781)
187 2dg1_A DRP35, lactonase; beta 99.6 3.5E-13 1.2E-17 148.5 29.6 275 737-1056 5-300 (333)
188 3no2_A Uncharacterized protein 99.6 2.4E-13 8.2E-18 143.8 26.9 253 815-1084 4-270 (276)
189 3dsm_A Uncharacterized protein 99.6 2.4E-13 8.3E-18 148.7 27.1 242 805-1072 44-307 (328)
190 2xdw_A Prolyl endopeptidase; a 99.6 1.9E-13 6.5E-18 167.3 28.8 248 343-618 123-416 (710)
191 3no2_A Uncharacterized protein 99.6 6E-13 2E-17 140.7 28.6 242 359-635 7-271 (276)
192 2mad_H Methylamine dehydrogena 99.6 4.6E-12 1.6E-16 140.2 36.7 201 808-1018 128-357 (373)
193 3sjl_D Methylamine dehydrogena 99.6 1.1E-12 3.6E-17 142.2 30.4 205 807-1020 139-372 (386)
194 2bkl_A Prolyl endopeptidase; m 99.6 1E-13 3.6E-18 169.0 24.9 247 403-661 117-398 (695)
195 2z2n_A Virginiamycin B lyase; 99.6 9.2E-12 3.1E-16 134.7 37.5 282 343-661 13-296 (299)
196 2bkl_A Prolyl endopeptidase; m 99.6 7.5E-14 2.6E-18 170.3 23.2 248 343-619 119-400 (695)
197 3e5z_A Putative gluconolactona 99.6 1E-12 3.5E-17 141.8 28.4 235 402-659 23-285 (296)
198 3dsm_A Uncharacterized protein 99.6 8.4E-13 2.9E-17 144.4 27.5 269 365-659 15-301 (328)
199 3sjl_D Methylamine dehydrogena 99.6 2.1E-12 7.2E-17 139.9 29.5 301 503-947 39-384 (386)
200 3v9f_A Two-component system se 99.5 1.2E-08 4E-13 126.1 67.2 558 406-1068 18-613 (781)
201 2z2n_A Virginiamycin B lyase; 99.5 4.8E-11 1.6E-15 129.0 40.3 281 736-1068 13-297 (299)
202 1rwi_B Serine/threonine-protei 99.5 1.2E-12 4.2E-17 139.2 27.0 240 346-619 25-267 (270)
203 1rwi_B Serine/threonine-protei 99.5 2.1E-12 7.2E-17 137.4 26.5 239 806-1068 25-266 (270)
204 3c75_H MADH, methylamine dehyd 99.5 6.7E-12 2.3E-16 138.8 28.7 204 808-1019 180-410 (426)
205 2qc5_A Streptogramin B lactona 99.5 8.7E-11 3E-15 127.0 37.2 279 343-658 18-298 (300)
206 1yr2_A Prolyl oligopeptidase; 99.5 2.1E-12 7.2E-17 158.6 25.7 245 404-661 160-442 (741)
207 2mad_H Methylamine dehydrogena 99.5 1.9E-10 6.5E-15 127.2 38.1 291 458-884 27-357 (373)
208 1yr2_A Prolyl oligopeptidase; 99.4 4.9E-12 1.7E-16 155.3 25.4 247 343-619 161-444 (741)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 5.5E-11 1.9E-15 129.5 29.5 248 343-616 16-299 (314)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1E-10 3.5E-15 127.4 30.9 239 805-1067 18-300 (314)
211 2qc5_A Streptogramin B lactona 99.4 1.2E-09 3.9E-14 118.0 37.3 278 537-917 18-298 (300)
212 3c75_H MADH, methylamine dehyd 99.4 3.1E-11 1.1E-15 133.5 23.2 272 354-661 82-403 (426)
213 3hrp_A Uncharacterized protein 99.4 4.3E-10 1.5E-14 126.3 31.6 253 805-1064 131-408 (409)
214 1xip_A Nucleoporin NUP159; bet 99.3 1.4E-10 4.7E-15 126.4 24.0 175 804-997 37-230 (388)
215 3g4e_A Regucalcin; six bladed 99.3 8.3E-10 2.8E-14 118.7 30.2 229 805-1056 13-263 (297)
216 3hrp_A Uncharacterized protein 99.3 3.6E-10 1.2E-14 126.9 28.3 238 345-614 131-408 (409)
217 3iuj_A Prolyl endopeptidase; h 99.3 3.8E-10 1.3E-14 137.0 27.8 250 343-620 127-409 (693)
218 3g4e_A Regucalcin; six bladed 99.3 9.1E-10 3.1E-14 118.4 27.6 228 344-605 12-261 (297)
219 3dr2_A Exported gluconolactona 99.3 6.7E-10 2.3E-14 120.0 26.5 229 342-607 42-298 (305)
220 2qe8_A Uncharacterized protein 99.3 1.9E-10 6.3E-15 126.7 21.5 270 345-651 17-312 (343)
221 1kb0_A Quinohemoprotein alcoho 99.3 1.2E-09 4.1E-14 131.0 29.6 192 824-1020 189-516 (677)
222 1mda_H Methylamine dehydrogena 99.3 9.8E-11 3.3E-15 127.5 18.1 196 808-1019 127-354 (368)
223 2qe8_A Uncharacterized protein 99.2 1.2E-10 4E-15 128.3 18.3 271 738-1063 17-318 (343)
224 3iuj_A Prolyl endopeptidase; h 99.2 3.7E-10 1.3E-14 137.1 24.2 244 403-661 125-406 (693)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 4.5E-09 1.5E-13 114.5 30.5 224 346-605 50-291 (326)
226 1yiq_A Quinohemoprotein alcoho 99.2 4E-09 1.4E-13 126.7 30.9 200 418-625 70-347 (689)
227 1yiq_A Quinohemoprotein alcoho 99.2 2.6E-09 8.8E-14 128.4 29.1 192 824-1020 182-514 (689)
228 4a0p_A LRP6, LRP-6, low-densit 99.2 2.5E-05 8.6E-10 91.9 62.8 533 420-1019 8-557 (628)
229 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.3E-13 111.0 31.2 222 807-1056 51-293 (326)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.2 1.8E-08 6.3E-13 112.5 33.3 297 467-916 55-375 (376)
231 1xip_A Nucleoporin NUP159; bet 99.2 3.4E-10 1.2E-14 123.3 18.0 183 346-558 39-233 (388)
232 3s94_A LRP-6, low-density lipo 99.2 1.2E-05 4E-10 94.7 57.5 526 426-1014 16-554 (619)
233 3dr2_A Exported gluconolactona 99.2 5.2E-09 1.8E-13 113.0 26.4 232 403-652 41-299 (305)
234 1mda_H Methylamine dehydrogena 99.2 8.2E-10 2.8E-14 120.2 19.5 266 358-668 33-353 (368)
235 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-08 5.4E-13 121.3 31.9 233 418-658 77-421 (677)
236 3q7m_A Lipoprotein YFGL, BAMB; 99.1 3.4E-08 1.2E-12 110.4 32.4 223 417-661 52-297 (376)
237 3hxj_A Pyrrolo-quinoline quino 99.1 4.1E-09 1.4E-13 115.5 24.0 301 456-919 24-324 (330)
238 1fwx_A Nitrous oxide reductase 99.1 1.1E-08 3.8E-13 115.2 25.7 260 549-924 100-436 (595)
239 3hxj_A Pyrrolo-quinoline quino 99.1 6E-09 2E-13 114.2 22.3 218 411-657 24-241 (330)
240 2ece_A 462AA long hypothetical 99.1 8.6E-08 2.9E-12 104.1 30.3 189 809-999 142-399 (462)
241 3s94_A LRP-6, low-density lipo 99.1 2.1E-05 7.3E-10 92.5 53.6 457 342-920 37-552 (619)
242 3ei3_A DNA damage-binding prot 99.1 0.00018 6E-09 90.5 68.5 577 348-1011 330-999 (1158)
243 2ece_A 462AA long hypothetical 99.0 5.4E-08 1.9E-12 105.6 26.0 238 351-604 88-399 (462)
244 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00014 4.8E-09 85.6 58.6 460 344-923 36-553 (628)
245 1fwx_A Nitrous oxide reductase 99.0 1.7E-08 5.8E-13 113.7 21.6 237 815-1072 100-437 (595)
246 2hz6_A Endoplasmic reticulum t 99.0 5.2E-10 1.8E-14 124.0 7.7 189 417-625 8-201 (369)
247 1npe_A Nidogen, entactin; glyc 99.0 2.4E-06 8.1E-11 89.9 35.6 222 407-642 36-263 (267)
248 1kv9_A Type II quinohemoprotei 98.9 2.8E-07 9.6E-12 110.4 28.8 192 824-1020 177-497 (668)
249 2hz6_A Endoplasmic reticulum t 98.9 4.3E-10 1.5E-14 124.6 3.9 186 815-1019 8-200 (369)
250 1w6s_A Methanol dehydrogenase 98.8 2.6E-06 8.9E-11 99.3 32.5 191 824-1020 181-512 (599)
251 1kv9_A Type II quinohemoprotei 98.8 1.5E-06 5.1E-11 104.1 31.0 190 467-662 68-335 (668)
252 1npe_A Nidogen, entactin; glyc 98.8 2.4E-06 8.1E-11 89.9 28.2 202 806-1019 37-246 (267)
253 3ott_A Two-component system se 98.8 0.0013 4.3E-08 80.7 62.2 537 406-1068 21-588 (758)
254 3ei3_A DNA damage-binding prot 98.8 0.0016 5.6E-08 81.8 65.1 569 410-1066 330-999 (1158)
255 2ad6_A Methanol dehydrogenase 98.8 1.7E-06 5.9E-11 101.2 28.6 191 824-1020 175-503 (571)
256 2iwa_A Glutamine cyclotransfer 98.8 1E-06 3.6E-11 90.0 23.1 201 806-1012 22-238 (266)
257 2iwa_A Glutamine cyclotransfer 98.7 6.8E-07 2.3E-11 91.4 20.8 222 835-1068 9-239 (266)
258 2ad6_A Methanol dehydrogenase 98.7 2.4E-06 8.2E-11 99.9 26.7 109 509-625 63-194 (571)
259 1flg_A Protein (quinoprotein e 98.7 1.6E-05 5.4E-10 93.0 32.9 148 868-1020 291-525 (582)
260 3nol_A Glutamine cyclotransfer 98.7 1.8E-06 6.1E-11 86.9 21.1 204 836-1053 32-243 (262)
261 2fp8_A Strictosidine synthase; 98.6 1.3E-05 4.5E-10 86.8 29.1 239 807-1068 21-315 (322)
262 3nol_A Glutamine cyclotransfer 98.6 2.4E-06 8.3E-11 85.9 20.8 186 805-999 43-243 (262)
263 1w6s_A Methanol dehydrogenase 98.6 1.9E-05 6.4E-10 92.1 30.7 112 509-626 63-201 (599)
264 1flg_A Protein (quinoprotein e 98.6 8.1E-05 2.8E-09 87.0 35.2 376 468-904 71-544 (582)
265 1k3i_A Galactose oxidase precu 98.6 5.1E-06 1.7E-10 99.8 24.6 277 349-649 190-530 (656)
266 3ott_A Two-component system se 98.5 0.0056 1.9E-07 74.9 69.3 571 344-1066 21-626 (758)
267 3nok_A Glutaminyl cyclase; bet 98.5 6E-06 2.1E-10 82.9 20.4 186 804-999 54-253 (268)
268 2xe4_A Oligopeptidase B; hydro 98.5 9.4E-06 3.2E-10 98.9 26.4 245 346-619 175-461 (751)
269 2fp8_A Strictosidine synthase; 98.5 3E-05 1E-09 83.9 27.2 255 346-616 20-313 (322)
270 2p4o_A Hypothetical protein; p 98.5 8.5E-05 2.9E-09 79.6 30.2 225 407-650 32-278 (306)
271 3mbr_X Glutamine cyclotransfer 98.5 3.3E-05 1.1E-09 77.1 23.9 205 836-1054 10-223 (243)
272 3nok_A Glutaminyl cyclase; bet 98.5 1.7E-05 5.7E-10 79.8 21.5 181 408-605 56-254 (268)
273 3v64_C Agrin; beta propeller, 98.5 0.00032 1.1E-08 76.4 33.7 247 345-624 34-283 (349)
274 3mbr_X Glutamine cyclotransfer 98.4 2E-05 6.7E-10 78.7 21.2 189 803-999 19-222 (243)
275 2p4o_A Hypothetical protein; p 98.4 9.6E-05 3.3E-09 79.2 28.4 237 333-606 20-278 (306)
276 3v65_B Low-density lipoprotein 98.4 0.00028 9.5E-09 78.1 31.6 245 347-624 79-326 (386)
277 1ijq_A LDL receptor, low-densi 98.4 0.00037 1.3E-08 74.8 30.6 229 818-1068 3-240 (316)
278 3v64_C Agrin; beta propeller, 98.3 0.00035 1.2E-08 76.0 30.4 237 807-1068 36-277 (349)
279 3qqz_A Putative uncharacterize 98.3 0.00035 1.2E-08 70.9 27.6 202 343-570 25-250 (255)
280 1ijq_A LDL receptor, low-densi 98.3 0.00097 3.3E-08 71.5 32.8 231 365-623 8-245 (316)
281 2xbg_A YCF48-like protein; pho 98.3 0.0023 7.9E-08 68.9 35.8 279 343-657 34-319 (327)
282 3v65_B Low-density lipoprotein 98.3 0.00024 8.2E-09 78.6 28.5 236 808-1068 80-320 (386)
283 1k3i_A Galactose oxidase precu 98.2 0.00012 4.3E-09 87.7 25.6 118 543-661 190-324 (656)
284 3p5b_L Low density lipoprotein 98.2 0.00086 2.9E-08 74.5 30.3 230 817-1068 84-322 (400)
285 3tc9_A Hypothetical hydrolase; 98.2 0.00055 1.9E-08 76.8 28.3 250 806-1065 138-429 (430)
286 4hw6_A Hypothetical protein, I 98.2 0.0005 1.7E-08 77.1 27.3 251 806-1065 140-432 (433)
287 2xbg_A YCF48-like protein; pho 98.2 0.0017 5.7E-08 70.1 30.6 195 805-1009 122-320 (327)
288 3qqz_A Putative uncharacterize 98.2 0.0013 4.5E-08 66.7 27.6 204 803-1010 25-252 (255)
289 2xe4_A Oligopeptidase B; hydro 98.2 0.00017 5.9E-09 87.7 25.3 200 403-614 169-398 (751)
290 3amr_A 3-phytase; beta-propell 98.2 0.0019 6.5E-08 67.9 29.1 187 824-1019 49-272 (355)
291 3p5b_L Low density lipoprotein 98.1 0.0018 6.1E-08 71.9 30.1 231 327-582 94-329 (400)
292 3tc9_A Hypothetical hydrolase; 98.1 0.00047 1.6E-08 77.4 25.1 240 408-658 138-428 (430)
293 3sov_A LRP-6, low-density lipo 98.1 0.0039 1.3E-07 66.6 30.4 237 358-624 6-246 (318)
294 4hw6_A Hypothetical protein, I 98.0 0.0014 4.9E-08 73.4 27.1 240 407-659 139-432 (433)
295 3sov_A LRP-6, low-density lipo 98.0 0.00095 3.3E-08 71.3 24.2 227 818-1068 6-240 (318)
296 3kya_A Putative phosphatase; s 98.0 0.0024 8.1E-08 71.5 27.1 256 806-1068 140-477 (496)
297 2xzh_A Clathrin heavy chain 1; 97.9 0.025 8.6E-07 58.1 31.1 237 352-620 74-336 (365)
298 3m0c_C LDL receptor, low-densi 97.9 0.0043 1.5E-07 74.6 30.0 231 327-581 406-640 (791)
299 3m0c_C LDL receptor, low-densi 97.9 0.0095 3.2E-07 71.6 32.6 212 405-623 422-639 (791)
300 3kya_A Putative phosphatase; s 97.8 0.0049 1.7E-07 68.9 26.2 246 408-661 140-476 (496)
301 1n7d_A LDL receptor, low-densi 97.7 0.00052 1.8E-08 82.1 17.5 209 407-625 406-623 (699)
302 3amr_A 3-phytase; beta-propell 97.7 0.0061 2.1E-07 64.1 23.1 185 467-659 42-262 (355)
303 1n7d_A LDL receptor, low-densi 97.6 0.00044 1.5E-08 82.8 15.5 207 805-1019 406-622 (699)
304 2ism_A Putative oxidoreductase 97.6 0.023 8E-07 61.6 27.4 229 806-1054 32-333 (352)
305 1bpo_A Protein (clathrin); cla 97.6 0.064 2.2E-06 57.4 29.0 240 350-621 71-336 (494)
306 3a9g_A Putative uncharacterize 97.6 0.039 1.3E-06 59.7 28.2 228 805-1054 29-330 (354)
307 2p9w_A MAL S 1 allergenic prot 97.5 0.013 4.5E-07 61.0 22.7 164 347-528 15-216 (334)
308 2xzh_A Clathrin heavy chain 1; 97.5 0.11 3.9E-06 53.3 30.2 261 563-921 48-334 (365)
309 2p9w_A MAL S 1 allergenic prot 97.5 0.019 6.6E-07 59.8 23.1 204 806-1011 14-265 (334)
310 1bpo_A Protein (clathrin); cla 97.5 0.16 5.6E-06 54.3 32.7 261 563-921 47-333 (494)
311 2xtc_A F-box-like/WD repeat-co 97.4 0.00013 4.4E-09 58.1 4.3 35 1-35 1-35 (90)
312 3a9g_A Putative uncharacterize 97.4 0.066 2.3E-06 57.9 27.4 230 345-603 29-329 (354)
313 2ism_A Putative oxidoreductase 97.3 0.065 2.2E-06 58.0 25.6 108 344-471 30-152 (352)
314 2vpj_A Kelch-like protein 12; 97.2 0.025 8.5E-07 60.0 20.7 232 815-1073 14-283 (301)
315 2g8s_A Glucose/sorbosone dehyd 97.2 0.097 3.3E-06 56.6 25.6 233 806-1059 19-347 (353)
316 3ii7_A Kelch-like protein 7; p 97.1 0.035 1.2E-06 59.0 21.7 233 816-1073 12-277 (306)
317 3sre_A PON1, serum paraoxonase 97.1 0.071 2.4E-06 57.0 23.2 202 807-1019 52-308 (355)
318 3sre_A PON1, serum paraoxonase 97.0 0.48 1.6E-05 50.6 29.3 197 408-615 51-297 (355)
319 3pbp_A Nucleoporin NUP82; beta 97.0 0.041 1.4E-06 59.0 19.4 110 810-921 26-160 (452)
320 2xn4_A Kelch-like protein 2; s 96.9 0.054 1.9E-06 57.3 20.8 231 815-1073 15-281 (302)
321 2vpj_A Kelch-like protein 12; 96.9 0.093 3.2E-06 55.4 22.5 194 417-619 62-281 (301)
322 3ii7_A Kelch-like protein 7; p 96.8 0.15 5E-06 54.0 23.0 230 419-661 13-273 (306)
323 2g8s_A Glucose/sorbosone dehyd 96.8 0.37 1.3E-05 52.0 25.9 234 345-603 18-340 (353)
324 3sbq_A Nitrous-oxide reductase 96.8 0.26 9E-06 54.5 23.8 115 806-922 324-481 (638)
325 3das_A Putative oxidoreductase 96.7 0.78 2.7E-05 48.7 29.1 235 804-1054 31-326 (347)
326 2xn4_A Kelch-like protein 2; s 96.7 0.12 4.3E-06 54.5 21.6 231 417-661 15-277 (302)
327 1cru_A Protein (soluble quinop 96.7 0.61 2.1E-05 52.2 27.4 104 805-908 27-163 (454)
328 4asc_A Kelch repeat and BTB do 96.6 0.21 7.3E-06 53.0 22.2 225 825-1074 13-283 (315)
329 1zgk_A Kelch-like ECH-associat 96.5 0.11 3.8E-06 55.0 19.2 234 812-1073 21-292 (308)
330 1zgk_A Kelch-like ECH-associat 96.3 0.3 1E-05 51.7 20.9 232 415-661 22-288 (308)
331 4asc_A Kelch repeat and BTB do 96.3 0.36 1.2E-05 51.2 21.6 216 421-650 8-253 (315)
332 3s25_A Hypothetical 7-bladed b 96.2 1.5 5.1E-05 45.8 26.7 169 459-650 21-204 (302)
333 2uvk_A YJHT; unknown function, 96.0 0.24 8.2E-06 53.8 19.1 231 815-1068 19-344 (357)
334 2be1_A Serine/threonine-protei 95.9 0.031 1.1E-06 59.2 10.3 200 859-1071 11-236 (339)
335 1xi4_A Clathrin heavy chain; a 95.8 0.31 1.1E-05 60.5 19.9 237 352-620 73-335 (1630)
336 1xi4_A Clathrin heavy chain; a 95.8 0.82 2.8E-05 56.9 23.3 266 563-920 47-332 (1630)
337 3pbp_A Nucleoporin NUP82; beta 95.8 0.096 3.3E-06 56.2 13.6 126 346-481 67-209 (452)
338 2woz_A Kelch repeat and BTB do 95.8 0.82 2.8E-05 48.4 21.6 227 420-661 18-288 (318)
339 1uuj_A Platelet-activating fac 95.6 0.009 3.1E-07 47.2 3.5 53 5-57 10-64 (88)
340 3s25_A Hypothetical 7-bladed b 95.5 2.8 9.6E-05 43.7 29.4 204 412-648 58-280 (302)
341 2woz_A Kelch repeat and BTB do 95.4 0.52 1.8E-05 50.0 18.4 195 812-1017 53-293 (318)
342 3das_A Putative oxidoreductase 95.4 3.4 0.00012 43.8 32.9 109 538-651 31-161 (347)
343 1tl2_A L10, protein (tachylect 95.1 0.075 2.6E-06 51.3 9.0 145 806-958 42-202 (236)
344 1cru_A Protein (soluble quinop 94.9 6.1 0.00021 44.0 31.4 112 344-471 26-162 (454)
345 1tl2_A L10, protein (tachylect 94.8 0.16 5.5E-06 49.1 10.2 147 847-1004 42-203 (236)
346 2nxp_A Transcription initiatio 94.7 0.083 2.8E-06 48.5 7.9 79 71-149 51-136 (156)
347 2uvk_A YJHT; unknown function, 94.5 1.6 5.5E-05 47.1 19.5 119 507-626 200-352 (357)
348 2wg3_C Hedgehog-interacting pr 94.4 7.9 0.00027 43.0 24.8 55 408-462 15-79 (463)
349 2be1_A Serine/threonine-protei 94.4 0.12 4E-06 54.7 9.2 190 467-663 12-234 (339)
350 3sbq_A Nitrous-oxide reductase 94.3 2.1 7.3E-05 47.5 19.0 192 815-1012 141-409 (638)
351 2j4b_A TAF5, transcription ini 94.1 0.041 1.4E-06 49.2 4.2 77 72-149 33-116 (138)
352 2j49_A Transcription initiatio 94.1 0.03 1E-06 50.6 3.4 81 67-149 31-118 (148)
353 4hvt_A Ritya.17583.B, post-pro 92.5 21 0.00071 42.2 25.7 249 347-615 131-429 (711)
354 3qhy_B Beta-lactamase inhibito 92.2 4.3 0.00015 41.8 16.9 223 806-1067 25-247 (282)
355 2zwa_A Leucine carboxyl methyl 91.9 7.1 0.00024 46.3 20.7 200 416-620 396-639 (695)
356 3qhy_B Beta-lactamase inhibito 91.5 7.4 0.00025 40.0 17.8 183 806-1011 64-246 (282)
357 2wg3_C Hedgehog-interacting pr 88.3 35 0.0012 37.8 28.5 105 806-910 15-160 (463)
358 3kci_A Probable E3 ubiquitin-p 88.2 32 0.0011 37.2 23.4 208 848-1065 55-292 (389)
359 4hvt_A Ritya.17583.B, post-pro 87.4 22 0.00074 42.0 19.5 244 410-659 132-429 (711)
360 3kci_A Probable E3 ubiquitin-p 85.8 42 0.0014 36.2 26.3 210 847-1066 106-345 (389)
361 3q6k_A 43.2 kDa salivary prote 85.3 43 0.0015 35.7 21.8 196 345-556 87-341 (381)
362 2zwa_A Leucine carboxyl methyl 83.7 18 0.00063 42.8 16.8 113 549-661 451-578 (695)
363 3q6k_A 43.2 kDa salivary prote 81.1 62 0.0021 34.5 21.7 155 826-1011 124-306 (381)
364 3b7f_A Glycosyl hydrolase, BNR 80.3 68 0.0023 34.5 23.2 216 845-1073 54-327 (394)
365 3b7f_A Glycosyl hydrolase, BNR 78.9 75 0.0026 34.2 29.7 236 406-654 54-366 (394)
366 3no0_A DNA gyrase subunit A; D 77.1 66 0.0023 32.6 20.7 206 847-1066 25-246 (276)
367 4gq2_M Nucleoporin NUP120; bet 76.5 1.3E+02 0.0044 37.0 21.3 42 980-1021 235-276 (950)
368 2zuy_A YESX protein; beta-prop 74.3 1.2E+02 0.0041 34.1 25.3 54 573-626 355-414 (620)
369 2zux_A YESW protein; beta-prop 74.1 1.2E+02 0.004 34.0 26.7 165 450-626 177-410 (591)
370 1zi0_A DNA gyrase subunit A; b 71.4 98 0.0033 31.9 27.0 191 416-615 1-225 (307)
371 2zux_A YESW protein; beta-prop 70.0 1.4E+02 0.0049 33.3 25.5 313 319-660 155-532 (591)
372 4d9s_A UVB-resistance protein 69.7 1.3E+02 0.0044 32.5 35.0 247 805-1065 68-356 (406)
373 3uc1_A DNA gyrase subunit A; D 68.3 1.2E+02 0.004 31.6 22.5 169 889-1066 95-279 (327)
374 4gq2_M Nucleoporin NUP120; bet 68.1 31 0.0011 42.5 13.0 40 889-928 236-275 (950)
375 3no0_A DNA gyrase subunit A; D 67.5 1.1E+02 0.0037 30.9 20.8 158 737-920 23-197 (276)
376 3zwu_A Alkaline phosphatase PH 65.8 72 0.0025 36.4 14.3 60 937-998 476-548 (592)
377 3uc1_A DNA gyrase subunit A; D 63.3 1.5E+02 0.005 30.9 24.9 213 737-966 41-279 (327)
378 1zi0_A DNA gyrase subunit A; b 61.2 1.5E+02 0.0052 30.4 26.2 240 815-1066 2-277 (307)
379 3f7f_A Nucleoporin NUP120; nuc 57.8 84 0.0029 36.5 12.9 37 982-1020 223-259 (729)
380 4a9v_A PHOX; hydrolase, beta-p 57.6 35 0.0012 38.4 9.5 61 937-999 476-549 (592)
381 3l6v_A GYRA, DNA gyrase subuni 55.3 2.1E+02 0.0073 30.3 27.5 147 415-571 4-178 (370)
382 3l6v_A GYRA, DNA gyrase subuni 52.9 2.3E+02 0.0079 30.0 26.1 239 814-1064 5-314 (370)
383 2wpv_A GET4, UPF0363 protein Y 51.0 58 0.002 33.6 9.4 110 38-186 17-127 (312)
384 1suu_A DNA gyrase subunit A; t 50.2 2.3E+02 0.0078 29.1 27.0 193 815-1014 7-234 (312)
385 4fhn_B Nucleoporin NUP120; pro 47.7 91 0.0031 39.3 12.5 37 847-884 239-275 (1139)
386 2d68_A FOP, FGFR1OP; alpha hel 47.0 17 0.00059 28.5 3.5 29 7-35 20-48 (82)
387 2k9m_A RNA polymerase sigma fa 47.0 23 0.00078 31.0 4.8 90 3-104 19-122 (130)
388 3mkr_A Coatomer subunit epsilo 42.4 1.5E+02 0.0052 30.0 11.4 84 6-100 65-156 (291)
389 3zwu_A Alkaline phosphatase PH 40.8 78 0.0027 36.0 9.3 64 540-603 477-548 (592)
390 1wp5_A Topoisomerase IV; broke 36.4 3.8E+02 0.013 27.6 24.1 243 814-1066 3-277 (323)
391 3mkr_A Coatomer subunit epsilo 35.4 1E+02 0.0034 31.4 8.6 105 7-120 102-211 (291)
392 4a9v_A PHOX; hydrolase, beta-p 34.0 1.4E+02 0.0048 33.6 9.6 64 540-603 477-548 (592)
393 3lpz_A GET4 (YOR164C homolog); 33.3 1.4E+02 0.0049 30.9 9.0 109 38-185 16-128 (336)
394 2lni_A Stress-induced-phosphop 33.0 2E+02 0.0069 23.8 9.3 88 8-101 19-111 (133)
395 3f7f_A Nucleoporin NUP120; nuc 32.2 1.8E+02 0.0061 33.8 10.4 34 407-442 222-255 (729)
396 4fhn_B Nucleoporin NUP120; pro 32.0 73 0.0025 40.2 8.1 40 889-928 238-277 (1139)
397 4gco_A Protein STI-1; structur 31.9 1.5E+02 0.0052 25.2 8.0 96 15-118 23-124 (126)
398 3qou_A Protein YBBN; thioredox 31.1 1.9E+02 0.0065 29.1 9.9 102 13-121 125-231 (287)
399 4asv_A Small glutamine-rich te 29.5 32 0.0011 27.4 2.5 19 1-19 15-33 (92)
400 4ga2_A E3 SUMO-protein ligase 28.3 2.9E+02 0.0099 24.2 9.6 93 21-121 13-111 (150)
401 2xz2_A CSTF-50, isoform B; RNA 28.1 65 0.0022 23.8 3.7 30 5-34 16-45 (66)
402 3u4t_A TPR repeat-containing p 27.9 2.2E+02 0.0077 27.8 9.8 91 7-101 4-101 (272)
403 4d9s_A UVB-resistance protein 27.3 5.9E+02 0.02 27.1 31.8 68 587-659 122-200 (406)
404 3elq_A Arylsulfate sulfotransf 25.2 7.6E+02 0.026 27.7 14.9 132 941-1077 211-395 (571)
405 4f3v_A ESX-1 secretion system 24.6 3E+02 0.01 27.7 9.5 93 5-101 101-198 (282)
406 2cn3_A Xyloglucanase, beta-1,4 24.5 9E+02 0.031 28.3 37.6 80 587-667 24-117 (737)
407 1suu_A DNA gyrase subunit A; t 24.3 5.8E+02 0.02 26.0 27.6 192 416-616 6-231 (312)
408 3mez_A Mannose-specific lectin 23.6 3.2E+02 0.011 22.7 8.2 55 892-964 22-76 (111)
409 1elw_A TPR1-domain of HOP; HOP 23.1 2.9E+02 0.0098 22.0 9.4 87 9-101 8-99 (118)
410 3mvd_K Regulator of chromosome 22.9 7.1E+02 0.024 26.5 32.8 69 846-919 294-374 (423)
411 4gcn_A Protein STI-1; structur 22.0 2.3E+02 0.0079 23.9 7.3 99 16-116 19-123 (127)
412 1wp5_A Topoisomerase IV; broke 21.5 6.7E+02 0.023 25.7 27.2 193 416-616 3-225 (323)
413 2ion_A PDCD4, programmed cell 20.7 2.1E+02 0.0072 25.6 6.7 19 82-100 17-35 (152)
414 2cn3_A Xyloglucanase, beta-1,4 20.5 1.1E+03 0.036 27.6 44.2 105 452-557 23-151 (737)
415 2nsz_A Programmed cell death p 20.0 2.3E+02 0.008 24.4 6.7 18 82-99 15-32 (129)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.6e-68 Score=641.58 Aligned_cols=565 Identities=21% Similarity=0.341 Sum_probs=485.7
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
++.+|++.|+|++|||||++ ||+|+.|+.|+|||. +++.+. .+.+|.+.|++++|||||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 45579999999999999995 689999999999995 555543 388999999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
++||+++.|++|+|||+. ++.+. .+.+|.+.|.+++|+||++ +|++++.|+.+++|+..+.......+|...|.
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCcee
Confidence 999999999999999964 45444 6889999999999999999 89999999999999977788888899999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+.+++ ++..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.+.
T Consensus 144 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~ 215 (577)
T 2ymu_A 144 GVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQ 215 (577)
T ss_dssp EEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEE
T ss_pred eeeeec--CCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEE
Confidence 999977 55789999999999999854 3445556677888999999999999999986 899999995 577888
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.+.+|.. .+.+++|+|++++|++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+.
T Consensus 216 ~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 216 TLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp EEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 8888877 8999999999999999999999999996 45666666655 448999999999999999999999999996
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
... ....+ .+|..
T Consensus 292 ~~~--~~~~~-----------------------------------------------------------------~~h~~ 304 (577)
T 2ymu_A 292 NGQ--LLQTL-----------------------------------------------------------------TGHSS 304 (577)
T ss_dssp TSC--EEEEE-----------------------------------------------------------------CCCSS
T ss_pred CCc--EEEEE-----------------------------------------------------------------ecCCC
Confidence 432 11111 23778
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
.|.+++|+|++..+++++.||.+++|+..... +.. +. +|...+.+++|+|+|++
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------~~~--~~--~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------LQT--LT--GHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------EEE--EC--CCSSCEEEEEECTTSSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------eEE--Ee--CCCCCEEEEEECCCCCE
Confidence 89999999999999999999999999854211 101 11 37889999999999999
Q ss_pred EEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 819 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 819 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
+++++ +|.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 99998 899999995 6788889999999999999999 9999999999999999995 677888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEeccC
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQ 976 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 976 (1101)
||+++|++++.|++|++||... +. +....++. ..+.+++|+||+++|+++ .|+.|++||. +++.+..+..|
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~~-~~-----~~~~~~~~-~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRNG-QL-----LQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTS-CE-----EEEEECCS-SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred CCCCEEEEEcCCCEEEEEECCC-CE-----EEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence 9999999999999999999754 22 22233444 789999999999999995 4899999995 57778887765
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 977 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
...|++++|+|||++|++++.||.|++||. +++++..+.+ |.. .+.+++|+| |+++|+|++.|
T Consensus 508 ---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~----------h~~--~v~~~~fs~-dg~~l~s~~~D 570 (577)
T 2ymu_A 508 ---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSS--SVWGVAFSP-DGQTIASASSD 570 (577)
T ss_dssp ---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC----------CSS--CEEEEEECT-TSSCEEEEETT
T ss_pred ---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC----------CCC--CEEEEEEcC-CCCEEEEEeCC
Confidence 899999999999999999999999999996 5777776653 555 457999999 79999999999
Q ss_pred CeEEEEe
Q 001319 1057 GSVKVME 1063 (1101)
Q Consensus 1057 g~v~iWd 1063 (1101)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.5e-66 Score=620.15 Aligned_cols=576 Identities=13% Similarity=0.156 Sum_probs=459.9
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+.+.+.+++|||||++ +|+++ ++.|+||++.+++... ++.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 4678899999999995 57775 6799999998776543 4889999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEEcCCceeEEeecCCcCeE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| .++.+..+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999998665432 225789999999999999999 67777654 4788888 5667788999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++|+|+. ...|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 99998843 136999999999999999888888889999999999999999999999986 8999999999999988
Q ss_pred Eec-------ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-CCCCeeEEecCCCEEEEEEcC
Q 001319 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 579 ~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+. +|.. .+.+++|+|++++|++++.|++|++||+.+++.+..+...... ..+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 884 5665 8999999999999999999999999999999988887643211 12334444 78899999999
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
+.+++|+...+. ....+
T Consensus 304 ~~i~~~~~~~~~-~~~~~-------------------------------------------------------------- 320 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQVR-------------------------------------------------------------- 320 (611)
T ss_dssp CCEEEEETTTTE-EEEEE--------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cceEE--------------------------------------------------------------
Confidence 999999976541 11111
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
.+|...|.+++|+|+|+++++++.||.|++|++... ....... ..|...|.++
T Consensus 321 ---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----------------------~~~~~~~--~~h~~~v~~~ 373 (611)
T 1nr0_A 321 ---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------------------ISNRVFP--DVHATMITGI 373 (611)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------------CEEECSS--CSCSSCEEEE
T ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----------------------ceeeecc--cCCcceEEEE
Confidence 348889999999999999999999999999987532 1111111 1388899999
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEE---eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
+|++++.++..+.|+.+++|+..++..... .........+++|+| ++.+++++ .++.+++|+ .++ +..+. |
T Consensus 374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~ 447 (611)
T 1nr0_A 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-I 447 (611)
T ss_dssp EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-C
T ss_pred EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-c
Confidence 999887655555599999999876543210 011234567899999 78777776 467899998 444 55554 8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK 966 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~ 966 (1101)
...+.+++|+|||++|++|+.|++|++||+.++.... ... .+|. ..+.+++|+|||++|++++ |+.|++|++.+
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~-~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS-SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC-CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 8899999999999999999999999999998754321 111 2333 7899999999999999965 99999999987
Q ss_pred -ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE-eeCCCCcCCCcccCCCCccceEEEEEec
Q 001319 967 -MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIAPSTYLSPSVLNGSQTVYPLVVAAHP 1044 (1101)
Q Consensus 967 -~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~l~~~p 1044 (1101)
++.+... ....|...|.+++|||||++|++|+.|++|++||+.++.... ... .+|. ...+.+++|+|
T Consensus 523 ~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---------~~h~-~~~v~~v~fs~ 591 (611)
T 1nr0_A 523 NFELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---------GAHA-MSSVNSVIWLN 591 (611)
T ss_dssp TTEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---------TSST-TSCEEEEEEEE
T ss_pred CCceeeee-eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---------ccCc-ccCeeEEEEcC
Confidence 5554321 112358999999999999999999999999999999875322 211 1141 34567999999
Q ss_pred CCCCEEEEEECCCeEEEEeCC
Q 001319 1045 LEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1045 ~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
++. |++++.||+|++|++.
T Consensus 592 -d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 592 -ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -TTE-EEEEETTSCEEEEECC
T ss_pred -CCE-EEEecCCCCEEEEecc
Confidence 566 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.8e-63 Score=597.45 Aligned_cols=547 Identities=16% Similarity=0.219 Sum_probs=444.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+|++... .......+|.+.|++++|||||+ +||+|+.|++|+|||+.+++.... ..+.+|.
T Consensus 43 l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSL-TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFS 103 (611)
T ss_dssp EEETTCS-SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSS
T ss_pred EecCCCc-ccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee-----------------EeecccC
Confidence 6766532 22333346999999999999998 569999999999999976543221 2367899
Q ss_pred ccEEEEEEccCCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-
Q 001319 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
+.|.+++|+|||++||+++.+ +.|++|| +++... .+.+|.+.|++++|+|++.. .|++|+.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEEC
Confidence 999999999999999999865 4678887 455444 67899999999999999874 599999999999999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-------CCCCceEEEEEccCCCEEE
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~d~~~l~ 554 (1101)
.+++++..+.+|...|.+++|+| +|++|++++.|++|++||+.+++....+. .|...|.+++|+|+|++|+
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 88888999999999999999987 67899999999999999999888777663 6888999999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCc--ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1101)
+++. |+.|++||+.+++.+..+..+... ....+.| +++.+++++.|+.+++|+...++....+..| ...|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--~~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGH--NKAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCC--SSCE
T ss_pred EEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCC--CCCE
Confidence 9986 899999999999999888754332 2333444 6889999999999999999998877777655 4489
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~-------------------------------------------- 362 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF-------------------------------------------- 362 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS--------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec--------------------------------------------
Confidence 999999999999999999999999998762 11111
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcc
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 792 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1101)
...|...|.+++|++++ .+++++.|+.+++|+..........
T Consensus 363 --------------------~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~----------------- 404 (611)
T 1nr0_A 363 --------------------PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK----------------- 404 (611)
T ss_dssp --------------------SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----------------
T ss_pred --------------------ccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----------------
Confidence 02377889999999776 5889999999999987543211100
Q ss_pred ceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEE
Q 001319 793 LMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~i 872 (1101)
.... .......+++++|||+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++
T Consensus 405 ~~~~-----~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~l 474 (611)
T 1nr0_A 405 AVAN-----KLSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHV 474 (611)
T ss_dssp CCEE-----ECSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEE
T ss_pred eeee-----ecCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEE
Confidence 0000 023456789999999988888889999999 344 44554 778899999999 9999999999999999
Q ss_pred EEeecceE--EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 873 YNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 873 wd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
||+.++.. +.. .+|...|++++|+|||++|++++.|++|++|++.+ ++..... ...+|. ..|.+++|+|||+
T Consensus 475 wd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~---~~~~H~-~~V~~v~fspdg~ 549 (611)
T 1nr0_A 475 YKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN---SWTFHT-AKVACVSWSPDNV 549 (611)
T ss_dssp EEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---CCCCCS-SCEEEEEECTTSS
T ss_pred EEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee---eeeecc-cceeEEEECCCCC
Confidence 99988754 233 68999999999999999999999999999999987 4332210 112243 7899999999999
Q ss_pred EEEEEe-CCeEEEEEcCCcee-e-eEeccCCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 950 RMLVVH-ETQLAIYDASKMER-I-RQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 950 ~l~~~~-d~~i~v~d~~~~~~-~-~~~~~~~~h-~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
+|++++ |+.|++|++.++.. + ..+ .+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 550 ~lasgs~D~~v~lW~~~~~~~~~~~~~---~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 550 RLATGSLDNSVIVWNMNKPSDHPIIIK---GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEET---TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEEECCCcEEEEECCCcccccchhh---ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999965 99999999988653 2 233 345 78999999999998 9999999999999974
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.5e-62 Score=585.54 Aligned_cols=533 Identities=21% Similarity=0.359 Sum_probs=457.0
Q ss_pred ccccCCCCcceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC
Q 001319 327 TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 405 (1101)
+|+. ..++.+++ +|.+.|++++|||||+ +||+|+.|++|+|||.. ++.+. .+.+|
T Consensus 42 iWd~---~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~-------------------~~~~~ 97 (577)
T 2ymu_A 42 LWNR---NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQ-------------------TLTGH 97 (577)
T ss_dssp EECT---TSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEE-------------------EECCC
T ss_pred EEEC---CCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEEE-------------------EEECC
Confidence 6763 44555555 4999999999999998 56899999999999964 55443 37889
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
...|.+++|+|||++|++++.|+.+++|+...... ....+|...|.++.|+|++. .+++++.++.+++|+..+.
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE----EEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeeccccccee----eeccCCCCceeeeeeecCCc--cceecccccceecccccee
Confidence 99999999999999999999999999999776432 24678999999999999999 7899999999999998888
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
.......|...|.++++++ ++.++++++.|+.|++||. +.+....+..+...|.+++|+|+++++++++. ++.
T Consensus 172 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~ 244 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKT 244 (577)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSC
T ss_pred eeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCE
Confidence 8888899999999999977 6689999999999999995 45666778888899999999999999999985 889
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
|++||. +++.+..+.+|.. .+..++|+|+++.+++++.|+.|++||.. ++.+..+..+ ...|.+++|+|+++.|+
T Consensus 245 i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h--~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 245 VKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCC--SSCEEEEEECTTSSEEE
T ss_pred EEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecC--CCCeEEEEECCCCCEEE
Confidence 999995 5677888888876 89999999999999999999999999974 5666666655 44899999999999999
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+++.|+.|++|+..... ...+
T Consensus 320 t~~~d~~i~~w~~~~~~--~~~~--------------------------------------------------------- 340 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQH--LQTL--------------------------------------------------------- 340 (577)
T ss_dssp EEETTSCEEEEETTSCE--EEEE---------------------------------------------------------
T ss_pred EEeCCCeEEEEeCCCCe--eEEE---------------------------------------------------------
Confidence 99999999999975431 1111
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
.+|...+.+++|+|+++.+++++.||.+++|+... ..+.. +. +|..
T Consensus 341 --------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~--~~~~ 386 (577)
T 2ymu_A 341 --------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LT--GHSS 386 (577)
T ss_dssp --------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EE--CCSS
T ss_pred --------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ec--CCCC
Confidence 23677899999999999999999999999998421 11111 11 3888
Q ss_pred CEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 806 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
.|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|++|++||. +++.+..+
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~ 463 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTL 463 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEE
Confidence 999999999999999998 899999995 6788889999999999999999 8999999999999999996 57788899
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEE
Q 001319 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYD 963 (1101)
Q Consensus 885 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d 963 (1101)
.+|...|++++|+||+++|++++.|++|++||.. ++.. ....+|. ..|.+++|+||+++|++++ |+.|++||
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~-----~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-----QTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEE-----EEEECCS-SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEE-----EEEeCCC-CCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999999999999999999999999999964 3432 2334444 7899999999999999854 89999999
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
. +++.+..+..| ...|++++|+|||++|++++.|++|++||
T Consensus 537 ~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 537 R-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp T-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 6 57777777665 89999999999999999999999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-62 Score=648.35 Aligned_cols=617 Identities=14% Similarity=0.173 Sum_probs=504.3
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
...+|.+.|++++|||||+ ++|+|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCC
Confidence 3446999999999999999 56899999999999999988765 377899999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 678999999999999976555899999999999999 8999999999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-------------CCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
.+++|+| ++.++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~ 819 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KN 819 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TT
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CC
Confidence 9999987 6689999999999999999887765544321 23688999999999999986 67
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
.+.+||..++.....+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..+. ..|.+++|+|+|+.+
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEE
Confidence 899999999998888874445589999999999999999999999999999999988887664 489999999999999
Q ss_pred EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCC
Q 001319 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQ 724 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (1101)
++++.|+.|++|++.+......... .......+.+++..+........ ..++. ...+.
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~ 955 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVL--------KQEIDVVFQENETMVLAVDNIRG-------------LQLIA-GKTGQ 955 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSE--------EEEEEEEEETTEEEEEEEESSSS-------------EEEEE-ESSCC
T ss_pred EEEeCCCeEEEEEccccceeeeecc--------cceeeEEEcCCCcEEEEecCCcc-------------eEEEe-cCcce
Confidence 9999999999999875421111000 00111222222222211111000 00111 11111
Q ss_pred eEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCC
Q 001319 725 CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1101)
... .....+.+++++|+++.+++++.+|.+++|++... ..... .. +|.
T Consensus 956 ~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~----------------------~~~~~-~~--~h~ 1003 (1249)
T 3sfz_A 956 IDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----------------------RVFSS-GV--GHK 1003 (1249)
T ss_dssp EEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT----------------------SCEEE-CC--CCS
T ss_pred EEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC----------------------ceeee-cc--cCC
Confidence 111 14567999999999999999999999999986532 11111 11 388
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
..|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++++.||.|++||+.+++.+..
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCceeEE
Confidence 9999999999999999998 8999999999988764 557899999999999 65 567899999999999999999999
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEE
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 962 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~ 962 (1101)
+.+|.+.|++++|+|++++|++++.||+|++||+.+++.... ..+|. ..+.+++|+|++++|++++ |+.|++|
T Consensus 1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-----l~~h~-~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-----LKGHN-GCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp EECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-----CCCCS-SCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred EcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-----eccCC-CcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 999999999999999999999999999999999998875443 33444 7899999999999999965 8999999
Q ss_pred EcCCceeeeEecc------CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccc
Q 001319 963 DASKMERIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1036 (1101)
Q Consensus 963 d~~~~~~~~~~~~------~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 1036 (1101)
|+.+++.+..+.. ...|...|++++|||||++|++++ |.|++||+.+++.+..+.. |.. .
T Consensus 1155 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~----------~~~--~ 1220 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT----------NGT--N 1220 (1249)
T ss_dssp ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC----------SSC--C
T ss_pred ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec----------cCC--c
Confidence 9999988766521 134588999999999999999886 8999999999988765542 333 3
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1037 PLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1037 ~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
+.+++|+| |+.+|++++.||.|++|++.
T Consensus 1221 i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1221 LKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred ccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 45789999 79999999999999999975
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-59 Score=571.17 Aligned_cols=558 Identities=11% Similarity=0.163 Sum_probs=470.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCC----ceeccccceeecccccCccccccccccCCcc-EEEEEEcc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-v~~~~~sp 416 (1101)
.|.+.|.+++|||||++ +|+++ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 47889999999999995 56765 889999999987 4433 47889999 99999999
Q ss_pred --CCCEEEEEECCCeEEEEeecCCc-----ccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEEcCCc
Q 001319 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1101)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd~~~~ 485 (1101)
|+++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999998651 1122336778999999999999999 78888877 7899998 677
Q ss_pred eeEEeecCCcCeEEEecccCCCcc-EEEEeccCCeEEEEecCCCCeeeeccCCCC---ceEEEEEccC-CCEEEEeecCC
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~d-~~~l~~~~~~~ 560 (1101)
.+..+.+|...|.+++|+++ +. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--
Confidence 88999999999999999884 44 899999999999999999998888888888 9999999999 999999986
Q ss_pred CCCceEEEEeCCCCeeEEEe-c---ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC--CCCCCe
Q 001319 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPR 634 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 634 (1101)
++.|++||+.+++.+..+ . +|.. .+..++|+ +++++++++.|+.|++||+.+++.+..+..+.. ...+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 889999999999999998 5 5655 89999999 999999999999999999999999888876521 134667
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCce
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1101)
+.|+ ++.++++++.|+.|++||+.++ .....+
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~---------------------------------------------- 335 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTI---------------------------------------------- 335 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEE----------------------------------------------
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEE----------------------------------------------
Confidence 7775 8999999999999999998764 222211
Q ss_pred EEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccce
Q 001319 715 ILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 715 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
.+|...|.+++| |+ +++++.||.+++|++. .+
T Consensus 336 -------------------~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~ 367 (615)
T 1pgu_A 336 -------------------SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------SM 367 (615)
T ss_dssp -------------------CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------EE
T ss_pred -------------------eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------hh
Confidence 237888999999 88 9999999999999753 01
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
. ..|...|.+++| +++..+++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+.+|
T Consensus 368 ~-----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~ 432 (615)
T 1pgu_A 368 H-----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLIL 432 (615)
T ss_dssp E-----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEE
T ss_pred c-----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEE
Confidence 1 138899999999 5566666666 9999999987655432 678999999 88888777 78999999
Q ss_pred EeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 874 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 874 d~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++... ....++. ..+.+++|+|++++|+
T Consensus 433 ~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~-~~v~~~~~s~~g~~l~ 504 (615)
T 1pgu_A 433 QSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR-AKPSYISISPSETYIA 504 (615)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS-SCEEEEEECTTSSEEE
T ss_pred eccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc-CceEEEEECCCCCEEE
Confidence 999999888876 88999999999 889999999 9999999999864321 2333443 7899999999999999
Q ss_pred EEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc----------CCCEEEEEeCCCcEEEEeCCCC-ceeEeeCC
Q 001319 953 VVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC----------NSQLVFATFCDGNIGVFDADTL-RLRCYIAP 1020 (1101)
Q Consensus 953 ~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~----------dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~ 1020 (1101)
+++ |+.|++||+.+++.+..+... |...|++++|+| ++++|++|+.||.|++||+.++ +.+..+..
T Consensus 505 ~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 505 AGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp EEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred EcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 965 899999999999998876651 389999999999 9999999999999999999998 56655542
Q ss_pred CCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1021 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1021 ~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
|. ..+.+++|+| ++. |++++.||+|++|++.+
T Consensus 583 ----------h~--~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 583 ----------HK--DGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ----------ST--TCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ----------Cc--cceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 44 4567999999 577 99999999999999875
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-58 Score=604.16 Aligned_cols=568 Identities=16% Similarity=0.250 Sum_probs=476.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999998766 6789999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++++..+.+|...|.+++|++..++.++++++.|+.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 89999999999999999999999777789999999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccC------------CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1101)
++.|++||+.+++....+.... ...+.+++|+|+++.+++++ ++.+.+||+.++.....+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 8999999999998877664321 12567789999999999887 68999999999988877752 3
Q ss_pred CCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccC
Q 001319 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1101)
Q Consensus 628 ~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 707 (1101)
+...|.+++|+|+++++++++.|+.|++|++.++ .....+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~--------------------------------------- 878 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADC--------------------------------------- 878 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEE---------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeec---------------------------------------
Confidence 3458999999999999999999999999998765 221111
Q ss_pred CCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeee-------
Q 001319 708 PVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS------- 780 (1101)
Q Consensus 708 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~------- 780 (1101)
.+|...|.+++|+|++..+++++.||.+++|++..............
T Consensus 879 --------------------------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 879 --------------------------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp --------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred --------------------------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 33788899999999999999999999999999764321111000000
Q ss_pred -----------ccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCe
Q 001319 781 -----------AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 848 (1101)
Q Consensus 781 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i 848 (1101)
.....+...++.... .....+.+++++|+++++++++ +|.|++||+.+++....+.+|...|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred CCcEEEEecCCcceEEEecCcceEEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 011122222222221 1456799999999999999998 8999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.||+|++||+.+++......
T Consensus 1007 ~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~- 1082 (1249)
T 3sfz_A 1007 RHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFT- 1082 (1249)
T ss_dssp CCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEE-
T ss_pred EEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEc-
Confidence 9999999 8999999999999999999999876 456899999999999975 67889999999999999987654432
Q ss_pred eecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 929 HIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
++. ..+.+++|+|++.++++++ |+.|++||+.+++.+..+..| ...|++++|+|||++|++|+.||.|++|
T Consensus 1083 ----~~~-~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1083 ----CHQ-GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---NGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp ----CCS-SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---SSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred ----ccC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---CCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 233 6799999999999999864 999999999999988777654 8899999999999999999999999999
Q ss_pred eCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q 001319 1008 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1008 d~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~ 1069 (1101)
|+.+++.+..+.+..... ...+|.. .+.+++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1155 d~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEE-GTATHGG--WVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp ESSSSCCCCCCCCCC--------CCS--CCCEEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred ECCCCceEEEeccccccc-cccccCc--eEEEEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 999998876653211111 1112443 456899999 788998885 9999999999883
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-57 Score=565.94 Aligned_cols=602 Identities=10% Similarity=0.086 Sum_probs=447.3
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.....+|.+.|++++|+|+|+ +||+|+.||.|+||+..+++... ...|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence 345568999999999999998 67999999999999987765432 234788999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee--------
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~-------- 487 (1101)
|++||+++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .++++.
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 8899999999999999999988765 443 778999999999999 899999999999999 555543
Q ss_pred ---EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------------------CCceEEEEE
Q 001319 488 ---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLY 546 (1101)
Q Consensus 488 ---~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~ 546 (1101)
..+.+|.++|.+++|+|. ++..+++++.|+.| +||+++.+....+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 234679999999999885 34689999999999 9999998877666554 357999999
Q ss_pred ccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE--ec---cc------------CCcceEEEEEeC----CC-CEEEEEe
Q 001319 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAVG 604 (1101)
Q Consensus 547 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~~~ 604 (1101)
+|+|++|++++. |+.|++||+.+++++.. +. +| ....|..++|++ ++ ..+++|+
T Consensus 220 spdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cCCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 999999999986 89999999999987764 21 22 122688999964 43 4566666
Q ss_pred CC-----CcEEEEECC------------------CCeeeEeeccCCCCCCCCeeEEec----------CCCEEEEEEcCC
Q 001319 605 ED-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADN 651 (1101)
Q Consensus 605 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~g~~l~~~~~d~ 651 (1101)
.| +.+.+|++. +.+....+.. .+...|.++.+.+ ++..+++++.|+
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 65 378899852 1222333322 1123567777654 345789999999
Q ss_pred cEEEEEccccccccccccCC-CcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 652 GFKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 652 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
.|++|++.++.........+ ........++++++++....+-.+..... .... ..+
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~---------------------~~~~--~~l 431 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA---------------------QNKD--YLL 431 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT---------------------BCCC--CSC
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc---------------------cCCC--Ccc
Confidence 99999997663222211111 11223356777777654332211100000 0000 011
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
.+|...+..++|+|+++.+++++.||+|++||+........ ..+... +... ...+|...|.++
T Consensus 432 ---~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~~-~~~~h~~~V~sv 494 (902)
T 2oaj_A 432 ---KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSRT-LNKAKELAVDKI 494 (902)
T ss_dssp ---CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHHH-TTCSSSCCEEEE
T ss_pred ---cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chhh-cCCCCCCceeEE
Confidence 44777788899999999999999999999999875421100 000000 0000 011488899999
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCCc---------------------------------------------eEEEEeeCC
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMTF---------------------------------------------KVMTTFMSP 844 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~~---------------------------------------------~~~~~~~~~ 844 (1101)
+|+|||++||+|+ ||+|+|||+.++ +++..+.+|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 9999999999998 899999999765 346778889
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE-----eec-cCCCCeeEEEEc-----CCC---CEEEEEeCCC
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLK-GHQKRITGLAFS-----TSL---NILVSSGADA 910 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~-----~~~-~h~~~V~~l~~s-----~d~---~~l~s~s~Dg 910 (1101)
.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|+ ||| ++|++|+.|+
T Consensus 575 ~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 575 KGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp SCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 99999999999 88 99999999999999998877653 343 899999999999 885 8999999999
Q ss_pred cEEEEEC---CCCccccceEEeecCCCCCCCcceEE-Ec----------------------CCCCEEEEEeCCeEEEEEc
Q 001319 911 QLCVWSI---DTWEKRKSVTIHIPAGKTPTGDTRVQ-FN----------------------ADQVRMLVVHETQLAIYDA 964 (1101)
Q Consensus 911 ~v~lwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~-~s----------------------~d~~~l~~~~d~~i~v~d~ 964 (1101)
+|++||+ .+|+....+.-+....+. ..+..++ |+ +++..|+ +.+..++||++
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~-~~~~~ir~~~~ 730 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDITNVTSK-GPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI-TGFDDIRLITL 730 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECCSS-CCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE-ECSSEEEEECT
T ss_pred cEEEEEEecCCCCcEEEEecCceecCCC-CceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE-EeccceEEEeC
Confidence 9999999 777755444333222112 4555555 55 4555444 44889999999
Q ss_pred CCceeeeEeccCCCCCCCEEEE---E------EccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 965 SKMERIRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 965 ~~~~~~~~~~~~~~h~~~v~~v---~------~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.+++.......+ ...+.++ . |+++|..|++++.||.|++|++.+++++..+..
T Consensus 731 ~~~k~~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 731 GKSKSTHKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp TCCCEEEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ccccceeeEccc---ceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 999988777443 4556665 6 789999999999999999999999999988874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6e-56 Score=539.93 Aligned_cols=536 Identities=14% Similarity=0.202 Sum_probs=453.1
Q ss_pred ccccCCC--C-cceeEeecCCCc-EEEEEEec--CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 327 TWSLDDL--P-RTVAVSLHQGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 327 ~~~~~~~--~-~~~~~~~~h~~~-V~~v~fsp--dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+|+.+.. + .......+|.+. |++++|+| +|+ +||+|+.||.|+|||+.++........ ....
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------~~~~ 110 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-----------NVKS 110 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE-----------EEEE
T ss_pred EEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccc-----------cccc
Confidence 7777643 1 334444569999 99999999 998 568999999999999976511000000 0112
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
.+.+|...|.+++|+|||++|++++.+ +.|++|| .++.+. .+.+|...|.+++|+|+++. .+++++.|+.
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~ 184 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGS 184 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTE
T ss_pred hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCc
Confidence 367799999999999999999999988 6889998 444444 67899999999999999975 6999999999
Q ss_pred EEEEE-cCCceeEEeecCCc---CeEEEecccCCC-ccEEEEeccCCeEEEEecCCCCeeeec-c---CCCCceEEEEEc
Q 001319 477 IKVWE-LSGRKLFNFEGHEA---PVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRVDY-D---APGHWCTTMLYS 547 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~~h~~---~v~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~s 547 (1101)
|++|| .+++.+..+.+|.. .|.+++|++ + +.+|++++.|+.|++||+.+++....+ . .+...|.+++|+
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred EEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc
Confidence 99999 88899999999999 999999987 5 689999999999999999999988888 5 788899999999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC---CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+++++++++. ++.|++||+.+++.+..+..+. ...+..+.+. +++++++++.||.|++||+.+++.+..+.
T Consensus 263 -~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 263 -DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp -SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred -CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 9999999986 8999999999999999988763 2356667775 88999999999999999999998888887
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCccee
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 704 (1101)
.+. ..|.+++| |+ +++++.||.|++|++. .+.
T Consensus 337 ~~~--~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~-------------------------------------- 368 (615)
T 1pgu_A 337 GHN--KGITALTV-NP---LISGSYDGRIMEWSSS----SMH-------------------------------------- 368 (615)
T ss_dssp CCS--SCEEEEET-TT---TEEEETTSCEEETTTT----EEE--------------------------------------
T ss_pred CCC--CCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--------------------------------------
Confidence 654 48999999 88 9999999999999875 110
Q ss_pred ccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccc
Q 001319 705 RSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 784 (1101)
Q Consensus 705 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~ 784 (1101)
..|...|.+++| +++..+++++.||.+++|++....
T Consensus 369 -----------------------------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~-------------- 404 (615)
T 1pgu_A 369 -----------------------------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE-------------- 404 (615)
T ss_dssp -----------------------------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE--------------
T ss_pred -----------------------------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc--------------
Confidence 116778899999 667889999999999999875321
Q ss_pred ccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 785 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|+++
T Consensus 405 ------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~ 462 (615)
T 1pgu_A 405 ------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVG 462 (615)
T ss_dssp ------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEE
T ss_pred ------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEe
Confidence 1225788999999999999989999999999999988887 78899999998 6799999
Q ss_pred eC-CCcEEEEEeecceEE-EeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceE
Q 001319 865 TE-DSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 942 (1101)
Q Consensus 865 ~~-dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 942 (1101)
+. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++.. ....+.....+.++
T Consensus 463 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~~ 537 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----TSRWAFRTSKINAI 537 (615)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----ECCSCCCSSCEEEE
T ss_pred ecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-----eEeecCCCCceeEE
Confidence 99 999999999988776 778899999999999999999999999999999999987653 23333123789999
Q ss_pred EEcC----------CCCEEEEEe-CCeEEEEEcCCc-eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 943 QFNA----------DQVRMLVVH-ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 943 ~~s~----------d~~~l~~~~-d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
+|+| ++.+|++++ |+.|++||+.++ +.+..+..| ...|++++|+|||+ |++++.||.|++|+++
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9999 999999965 899999999998 667666554 89999999999999 9999999999999987
Q ss_pred C
Q 001319 1011 T 1011 (1101)
Q Consensus 1011 ~ 1011 (1101)
+
T Consensus 614 ~ 614 (615)
T 1pgu_A 614 L 614 (615)
T ss_dssp -
T ss_pred c
Confidence 5
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-55 Score=548.74 Aligned_cols=592 Identities=11% Similarity=0.098 Sum_probs=433.1
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+|...|++++|+|||++||+|+.||+|+|||..+++... ...|...|++++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999998765443 235788999999999 77 799999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee-----------eeccCCCCceEEEEEccC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----------VDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~d 549 (1101)
.+++++..+. |.+.|++++|+| ++.+|++|+.||+|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 8888888886 778999999987 6689999999999999999887653 233567789999999996
Q ss_pred C-CEEEEeecCCCCCceEEEEeCCCCeeEEEeccc-----------------CCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 550 G-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-----------------RKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 550 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
+ ..+++++. ++.| +||+++++.++.+.++ +...+.+++|+|+|++|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777764 8899 9999999999988766 1236999999999999999999999999
Q ss_pred EECCCCeeeEeec-----cC-----------CCCCCCCeeEEec----CC-CEEEEEEcC-----CcEEEEEcccccccc
Q 001319 612 WDMDNVNILTSTD-----AE-----------GGLPNLPRLRFSK----EG-NLLAVTTAD-----NGFKILANAIGLRSL 665 (1101)
Q Consensus 612 wd~~~~~~~~~~~-----~~-----------~~~~~v~~v~~s~----~g-~~l~~~~~d-----~~i~iwd~~~~~~~~ 665 (1101)
||+.+++.+.... .+ .+...|.+++|++ ++ .++++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 9999988765421 11 1233689999964 43 567777665 3788888532100 0
Q ss_pred ccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEe
Q 001319 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLY 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 745 (1101)
. . + ..+. +. . + +......+.+. ..+...|..+.+
T Consensus 317 ~-~-~-s~~~----~~--~-------------------------------~--~~~~~~~~~~~----~~~~~~v~~~~~ 350 (902)
T 2oaj_A 317 S-I-T-SYEG----MK--N-------------------------------Y--YANPKQMKIFP----LPTNVPIVNILP 350 (902)
T ss_dssp G-G-C-CHHH----HH--H-------------------------------H--HHSCSEEEEEC----CSSSSCEEEEEE
T ss_pred c-c-c-chhh----hh--h-------------------------------h--hcCccceEEEe----cCCCCceEEEEE
Confidence 0 0 0 0000 00 0 0 00000001111 113456666666
Q ss_pred ec----------CcccEEEeecCCeEEEEEecCCCCCCC------------CCe----eeeccccccccCC---ccceee
Q 001319 746 TN----------SAVGLLALGSNGVQKLWKWHRNEQNPS------------GKA----TASAVPQHWLPSS---GLLMAN 796 (1101)
Q Consensus 746 s~----------~~~~l~~~~~dg~v~~w~~~~~~~~~~------------~~~----~~~~~~~~~~~~~---~~~~~~ 796 (1101)
.+ +...+++++.||.+++|++........ ... .......+|+... +.. ..
T Consensus 351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~ 429 (902)
T 2oaj_A 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-DY 429 (902)
T ss_dssp CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CC
T ss_pred CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-CC
Confidence 44 334688888999999999853311000 000 0001112233110 000 01
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEE----EE--ee-----CCCCCeeEEEEecCCCCEEEEE
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM----TT--FM-----SPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~~~~~la~g 864 (1101)
.+. +|...+.+++|+||+++||+|+ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|
T Consensus 430 ~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsg 506 (902)
T 2oaj_A 430 LLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVS 506 (902)
T ss_dssp SCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEE
T ss_pred ccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEE
Confidence 122 4777788899999999999998 999999999877431 11 11 7888999999999 99999999
Q ss_pred eCCCcEEEEEeecc---------------------------------------------eEEEeeccCCCCeeEEEEcCC
Q 001319 865 TEDSTIHIYNVRVD---------------------------------------------EVKSKLKGHQKRITGLAFSTS 899 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~---------------------------------------------~~~~~~~~h~~~V~~l~~s~d 899 (1101)
+.||+|+||++.++ +++..+.+|.+.|++|+||||
T Consensus 507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 99999999999876 346788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEeecC-CCCCCCcceEEEc-----CCC---CEEEEEe-CCeEEEEEc---CC
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFN-----ADQ---VRMLVVH-ETQLAIYDA---SK 966 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s-----~d~---~~l~~~~-d~~i~v~d~---~~ 966 (1101)
| +||+|+.|++|++||+.++..+....+.... +|. ..|++++|+ ||| .+|++++ |++|++||+ .+
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~-~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~ 664 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS-ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG 664 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC-CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc-cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC
Confidence 9 9999999999999999886543221222232 555 789999999 886 7888854 999999999 78
Q ss_pred ceeeeEeccCC--CCCCCEEEEE-Ec----------------------cCCCEEEEEeCCCcEEEEeCCCCceeEeeCCC
Q 001319 967 MERIRQWTPQD--ALSAPISCAV-YS----------------------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 967 ~~~~~~~~~~~--~h~~~v~~v~-~s----------------------~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
|+....+..+. .|..+|..++ |+ ++|..|+++ +..|+||++.++++.+....
T Consensus 665 g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~- 741 (902)
T 2oaj_A 665 GKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK- 741 (902)
T ss_dssp GCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS-
T ss_pred CcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc-
Confidence 88887776653 2357777776 65 455555544 77899999999988776542
Q ss_pred CcCCCcccCCCCccceEEE---E------EecCCCCEEEEEECCCeEEEEeCCCCC--CccccCCC
Q 001319 1022 TYLSPSVLNGSQTVYPLVV---A------AHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVSPP 1076 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l---~------~~p~d~~~l~s~~~Dg~v~iWd~~~~~--~~~~~~~~ 1076 (1101)
|. ..+.++ . |++ ++..|++++.||+|++|++.+.+ ...+++++
T Consensus 742 ---------~~--~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 742 ---------YP--LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp ---------SC--EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred ---------cc--eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence 33 333444 4 567 68899999999999999999999 45555444
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7e-47 Score=475.89 Aligned_cols=557 Identities=13% Similarity=0.159 Sum_probs=422.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|.+++|||+|+ ++|+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+|++
T Consensus 10 ~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred ecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCE
Confidence 45999999999999998 56899999999999999887665 37789999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~~~v~ 498 (1101)
||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++|| .++ .....+.+|...|.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999999999999999988766 6789999999999999999 799999999999999 555 67788899999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEcc--CCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..+++
T Consensus 145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (814)
T ss_dssp EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCc
Confidence 9999873 45799999999999999998887777666554 7899999999 9999999985 8899999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE-EEEEEcCCcEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LAVTTADNGFK 654 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~-l~~~~~d~~i~ 654 (1101)
.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.++.+.
T Consensus 220 ~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 220 CVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEETTEEE
T ss_pred EEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEeCCCEE
Confidence 9999998876 899999999999999999999999999999999888876644 7999999999873 24444567788
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCc-ceeccCCCCCCceEEEEEEeCCC--eEEEEcC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC-KVERSSPVRPSPIILAEIVDSGQ--CRLVTMP 731 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 731 (1101)
+|++.... ..+.++|+++.++.+...... .+....... .+....... .....+
T Consensus 297 ~~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~- 352 (814)
T 3mkq_A 297 VLSLGNDE------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRG-----NEEVEQDEPLSLQTKEL- 352 (814)
T ss_dssp EEECSCCS------------------CCEEECSSSEEEEECCTTSCTTCEEEEECCS-----CCCCCSSSCBCCCCEEE-
T ss_pred EEEcCCCC------------------ceeEECCCCCEEEECcccccceeeeeeeccc-----ccccccCccceeeeecC-
Confidence 99876541 234666777666543222210 000000000 000000000 000011
Q ss_pred CCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEE
Q 001319 732 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 811 (1101)
Q Consensus 732 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 811 (1101)
..+...+.+++|+|+|+.+++++ +|.+.+|++... .. .+.+.+.+++
T Consensus 353 --~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~-----------------~~-------------~~~~~i~~~~ 399 (814)
T 3mkq_A 353 --GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW-----------------RN-------------KAFGKCQDFV 399 (814)
T ss_dssp --CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT-----------------EE-------------EEEEECSEEE
T ss_pred --CCCccCCceeEECCCCCEEEEec-CCEEEEEECccc-----------------cc-------------cCCCceEEEE
Confidence 23566789999999999888877 899999985311 00 1345678999
Q ss_pred ecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC---CEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 812 LSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 812 ~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
|+|||+++++++ +|.|++|+. +.+|...+.+++|+| ++ .+|++++.|+.|++||+.+++.+..+..|
T Consensus 400 ~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 470 (814)
T 3mkq_A 400 WGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN 470 (814)
T ss_dssp ECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTTTCCEEEEESSC
T ss_pred EeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCCEEEEEECCcCcEEEEEecC
Confidence 999999999997 899999963 355778899999999 77 57888899999999999999999999888
Q ss_pred CCCeeEEEEcCCCCEEEEE------eCCCcEEEEECC---------------CCccccceEEeecCCCCCCCcceEEEcC
Q 001319 888 QKRITGLAFSTSLNILVSS------GADAQLCVWSID---------------TWEKRKSVTIHIPAGKTPTGDTRVQFNA 946 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~------s~Dg~v~lwd~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 946 (1101)
.. .++|+|||++|+++ +.++.+.+|--. .+.......+... . ..+.+..|.
T Consensus 471 ~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~i~s~~w~- 542 (814)
T 3mkq_A 471 AK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYEL-S---ESITSGKWV- 542 (814)
T ss_dssp EE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEE-C---SCCSEEEEE-
T ss_pred CC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEe-c---cEEEeeEEe-
Confidence 65 89999999999999 666555555421 0000001111110 1 345566665
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 947 DQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 947 d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
+..++... .+.+..+.......+..+ ..++..+.|.+++..++....++.+.+|++..
T Consensus 543 -~~~~i~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 543 -GDVFIFTTATNRLNYFVGGKTYNLAHY------TKEMYLLGYLARDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp -TTEEEEECTTSEEEEEETTEEEEEEEC------SSCCEEEEEEGGGTEEEEECTTCCEEEEECCH
T ss_pred -CCEEEEEcCCCeEEEEeCCeeEEEEEC------CccEEEEEEEecCCEEEEEcCCCCEEEEEECc
Confidence 33444433 344444322211122221 45566777889999999999999999999864
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-45 Score=464.73 Aligned_cols=465 Identities=15% Similarity=0.194 Sum_probs=385.7
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+.+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.||.|++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 81 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3578899999999999999999999999999999999987666 6779999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC-CeeeeccCCCCceEEEEEcc-CCCEEEEe
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~ 556 (1101)
|| .+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+++. .....+..+...|.+++|+| ++..++++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99 89999999999999999999987 5689999999999999999887 55567778889999999999 88899998
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC--CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+. ++.|++||+.++.....+..+....+..++|+| +++++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 160 ~~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 85 899999999999888888887756899999999 999999999999999999999999888876644 7999
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCce
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1101)
++|+|+++++++++.||.|++||..++ .....+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~---------------------------------------------- 266 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL---------------------------------------------- 266 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE----------------------------------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe----------------------------------------------
Confidence 999999999999999999999998765 222111
Q ss_pred EEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccE-EEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 715 ILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 715 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
..+...+.+++|+|++..+ ++++.++.+.+|++..
T Consensus 267 -------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 302 (814)
T 3mkq_A 267 -------------------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN------------------------- 302 (814)
T ss_dssp -------------------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-------------------------
T ss_pred -------------------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-------------------------
Confidence 2256688999999998754 7777788888887431
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC---eEEE------EECCCceE----EEEeeCCCCCeeEEEEecCCCC
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG---KISL------FNMMTFKV----MTTFMSPPPASTFLAFHPQDNN 859 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg---~i~v------wd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~ 859 (1101)
....+.++|+|+.++++. +. .+.. |++..+.. ...+..+...+.+++|+| +++
T Consensus 303 ------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~ 369 (814)
T 3mkq_A 303 ------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGR 369 (814)
T ss_dssp ------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSS
T ss_pred ------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCC
Confidence 123567889999988875 22 1222 23333322 234455667899999999 999
Q ss_pred EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 860 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
+|++++ ||.+.+|++...... +.+.|.+++|+||++++++++.||.|++|+...+ +. ..+
T Consensus 370 ~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~-------------~~-~~v 429 (814)
T 3mkq_A 370 FVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE-------------VT-SWS 429 (814)
T ss_dssp EEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETTEE-------------CT-TCC
T ss_pred EEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC-------------cc-ceE
Confidence 999998 899999997654432 3567899999999999999999999999974332 11 567
Q ss_pred ceEEEcCCC---CEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEE------eCCCcEEEE
Q 001319 940 TRVQFNADQ---VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT------FCDGNIGVF 1007 (1101)
Q Consensus 940 ~~~~~s~d~---~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~------~~dg~i~vw 1007 (1101)
..+.|+|++ ..|++ +.++.|++||+.+++.+..+..+ . ..++|||||++|+++ +.++.+.+|
T Consensus 430 ~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~---~---~~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 430 VPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN---A---KDVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp CCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC---E---EEEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC---C---CEEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 788999998 34444 77999999999999999888765 2 299999999999999 555544444
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-44 Score=413.44 Aligned_cols=284 Identities=21% Similarity=0.374 Sum_probs=263.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++
T Consensus 105 ~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCE
Confidence 36889999999999998 56999999999999999887654 37889999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
||+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ +|++|+.|++|++|| .++.++..+.+|...|.+
T Consensus 165 l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp EEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 9999999999999999987766 6789999999999999999 899999999999999 899999999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC--------------------CCEEEEeecC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGTS 559 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d--------------------~~~l~~~~~~ 559 (1101)
+++++ ++.+|++++.|++|++||+.+......+..|...|.+++|+|+ |.++++++.
T Consensus 240 ~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~- 316 (410)
T 1vyh_C 240 VRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR- 316 (410)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-
T ss_pred EEECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC-
Confidence 99977 6689999999999999999999999999999999999999996 678999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
|+.|++||+.+++++..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|
T Consensus 317 ---D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~ 390 (410)
T 1vyh_C 317 ---DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHK 390 (410)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECS
T ss_pred ---CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcC
Confidence 89999999999999999999887 899999999999999999999999999999999888876654 799999999
Q ss_pred CCCEEEEEEcCCcEEEEEc
Q 001319 640 EGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.+|++|+.|++|++|+.
T Consensus 391 ~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSCEEEEETTSEEEEEC-
T ss_pred CCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=358.86 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=260.2
Q ss_pred ecCCCcEEEEEEecC----CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 341 LHQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 341 ~~h~~~V~~v~fspd----g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+|.+.|++++|+|+ ++ +|++|+.|++|+||++.+++.... ..+.+|...|.+++|+|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~~~~~~~ 90 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVVSVDISH 90 (321)
T ss_dssp TSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECS
T ss_pred ccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEEEEEECC
Confidence 359999999999986 44 679999999999999987653221 23789999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++.++++|+.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|..
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~ 165 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGK 165 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence 99999999999999999999988766 6778999999999999999 899999999999999 88999999999999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|.+++|+| ++++|++++.|+.|++||+.+++....+..+...|.+++|+|++++|++++. ++.|++||+.+++
T Consensus 166 ~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 166 FILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHAN 239 (321)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCC
T ss_pred eEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcc
Confidence 999999987 6689999999999999999999988899999999999999999999999986 8999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
....+.+|.. .+.+++|+|++++|++++.|++|++||+.+++.+..+..+. ..|.+++|+|++++|++++.|+.|++
T Consensus 240 ~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 240 LAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred eeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999887 89999999999999999999999999999999999887654 47999999999999999999999999
Q ss_pred EEc
Q 001319 656 LAN 658 (1101)
Q Consensus 656 wd~ 658 (1101)
||.
T Consensus 317 wd~ 319 (321)
T 3ow8_A 317 YDC 319 (321)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.3e-39 Score=358.64 Aligned_cols=286 Identities=19% Similarity=0.282 Sum_probs=257.6
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|||+ +|++|+.||.|+|||+.+++.+. .+..|...|.+++|+|+|++
T Consensus 52 ~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEECCCCCE
Confidence 45999999999999998 56899999999999999887664 26779999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcc-cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
||+|+.|+.|++||+.+++. ......+.+|.+.|.+++|++++. +++++.|++|++|| .+++++..+.+|.+.|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987643 233346789999999999999875 88999999999999 88999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++|+| ++.++++++.|++|++||++++.....+..|...|.+++|+|+++++++++. |+.|++||+.+++.+.
T Consensus 189 ~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEE
Confidence 999987 5689999999999999999999999999999999999999999999999986 8999999999998887
Q ss_pred EecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 579 TYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 579 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
.+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++|+.|+.|++||
T Consensus 263 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 775432 2358899999999999999999999999999999888887664 4899999999999999999999999996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.1e-39 Score=358.01 Aligned_cols=293 Identities=17% Similarity=0.248 Sum_probs=261.0
Q ss_pred eeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
..+++ +|.+.|++++|+|+|+ +||+|+.||+|+|||..+++... .+..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEEC
Confidence 34444 5999999999999998 56999999999999998877654 256688899999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcc---cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
|+|.+||+|+.|+.|++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++++..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999875421 223346779999999999999999 799999999999999 8999999999
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
+|...|.++++++.+++.+|++++.||+|++||+++++....+..|...|.+++|+|++.++++++. |+.|++||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 9999999999998877889999999999999999999999899999999999999999999999986 899999999
Q ss_pred CCCeeEEEecccCC-cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 572 SEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+++.+..+..+.. ..+.+++|+|+++++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcCC
Confidence 99988877765432 357889999999999999999999999999999888887654 489999999999999999999
Q ss_pred CcEEEEE
Q 001319 651 NGFKILA 657 (1101)
Q Consensus 651 ~~i~iwd 657 (1101)
++|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4e-39 Score=354.18 Aligned_cols=295 Identities=21% Similarity=0.278 Sum_probs=256.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|++..+|++|+.|++|++|++......... +...+.+|...|.+++|+|||++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCCCCE
Confidence 3599999999999987457899999999999998754322110 11347899999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v 500 (1101)
|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||..++++..+.+|...|.++
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEE
Confidence 9999999999999999998766 6889999999999999999 8999999999999998889999999999999999
Q ss_pred ecccCC----CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 501 CPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 501 ~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++.|.. ++..+++++.|+.|++||+.+......+..|...|.+++|+|+|++|++++. |+.|++||+.+++.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKKA 230 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 998743 3458999999999999999998888888999999999999999999999986 89999999999999
Q ss_pred EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC------CCCCCCeeEEecCCCEEEEEEcC
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG------GLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+.... +...+.+++|+|+|++|++|+.|
T Consensus 231 ~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 231 MYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 99988653 68999999999998887755 59999999887776654321 23457899999999999999999
Q ss_pred CcEEEEEcccc
Q 001319 651 NGFKILANAIG 661 (1101)
Q Consensus 651 ~~i~iwd~~~~ 661 (1101)
+.|++||+.++
T Consensus 308 g~i~vWd~~t~ 318 (319)
T 3frx_A 308 NVIRVWQVMTA 318 (319)
T ss_dssp SCEEEEEEEEC
T ss_pred ceEEEEEEeec
Confidence 99999998754
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.8e-39 Score=348.55 Aligned_cols=289 Identities=17% Similarity=0.292 Sum_probs=251.4
Q ss_pred eEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 338 ~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+++ +|.+.|++++|||+|+ ++++|+.||.|+|||+.++..+. .+.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~ 65 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIA 65 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEG
T ss_pred EEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeC
Confidence 3344 4999999999999998 56899999999999999887654 3677999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCC
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~ 494 (1101)
++++|++|+.|++|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~ 140 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence 99999999999999999999998766 6889999999999999999 899999999999999 655 4557789999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEcc--CCCEEEEeecCCCCCceEEEEeC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..|.+++|+|. ++.+|++++.|++|++||+........+. .+...+..+.|+| ++.++++++. |+.|++||+
T Consensus 141 ~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~ 215 (304)
T 2ynn_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (304)
T ss_dssp SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEET
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeC
Confidence 99999999874 45799999999999999998877665554 4456788999987 7789999986 999999999
Q ss_pred CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC--EEEEEEc
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTA 649 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~--~l~~~~~ 649 (1101)
++++++..+.+|.. .+..++|+|++++|++|+.||+|++||..+++.+..+..+. ..+.+++|+|++. ++++|+.
T Consensus 216 ~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEEET
T ss_pred CCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEecC
Confidence 99999999999987 89999999999999999999999999999999999887654 3789999999875 5777765
Q ss_pred CCcEEEEEccc
Q 001319 650 DNGFKILANAI 660 (1101)
Q Consensus 650 d~~i~iwd~~~ 660 (1101)
| .+.+|++.+
T Consensus 293 ~-g~~~~~~~~ 302 (304)
T 2ynn_A 293 N-GFTVLSLGN 302 (304)
T ss_dssp T-EEEEEECC-
T ss_pred C-ceEEEEecc
Confidence 5 466777654
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1e-38 Score=364.07 Aligned_cols=286 Identities=19% Similarity=0.316 Sum_probs=261.4
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|++++|+|++.+||+|+.||+|+|||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLW 177 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999998766 7889999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++++..+.+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..|...|.++.+++++.++++++.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~- 254 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN- 254 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC-
Confidence 9 88889999999999999999988 5679999999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC--------------------CCEEEEEeCCCcEEEEECCCCee
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++..
T Consensus 255 ---D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 255 ---DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp ---TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred ---CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 89999999999999999999887 8999999996 67899999999999999999999
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCC
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 699 (1101)
+..+..+.. .|.+++|+|+|++|++++.|+.|++||+.++ .....+
T Consensus 331 ~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~------------------------------- 376 (410)
T 1vyh_C 331 LMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL------------------------------- 376 (410)
T ss_dssp EEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE-------------------------------
T ss_pred EEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE-------------------------------
Confidence 988876644 7999999999999999999999999998765 222221
Q ss_pred CcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 700 NCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
.+|...|.+++|+|++.++++++.||.|++|+.
T Consensus 377 ----------------------------------~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 ----------------------------------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----------------------------------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ----------------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 237888999999999999999999999999974
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-39 Score=362.90 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=258.7
Q ss_pred ceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
.+.+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEE
Confidence 344444 59999999999999985 6899999999999999887654 37789999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcc----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++|| .+++.+..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999976431 1223357899999999999998654 699999999999999 88888877
Q ss_pred e-----ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-CCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 490 F-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 490 ~-----~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+ .+|...|.+++|++. ++.++++|+.|++|++||++. ......+.+|...|.+++|+|+++++++++. |
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D 270 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----D 270 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----S
T ss_pred eecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----C
Confidence 7 679999999999754 557999999999999999984 4666778889999999999999999999986 8
Q ss_pred ceEEEEeCCCCeeEEEecccCC------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc--CCCCCCCCee
Q 001319 564 SFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPRL 635 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v 635 (1101)
+.|++||+.+++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||...++.+..+.. .++...|.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 9999999999999988876533 1378899999999999999999999999999888776632 2345689999
Q ss_pred EEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+|+|+|++|++|+.|++|++|++...
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999999999998755
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=346.33 Aligned_cols=287 Identities=14% Similarity=0.274 Sum_probs=257.3
Q ss_pred cccCCccEEEEEEccC----CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 402 FKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5679999999999985 679999999999999999876532 2235789999999999999999 89999999999
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
++|| .+++++..+..|...+.+++|+| ++++|++++.|+.|++|+++++.....+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999 88999999999999999999987 66899999999999999999999998888888899999999999999999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.|+.|++||+.+++....+..+. ..|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEEEE
Confidence 86 89999999999999999999877 89999999999999999999999999999999888887654 4799999
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|++++|++++.|++|++||+.++ ..+..+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~------------------------------------------------ 286 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTF------------------------------------------------ 286 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEE------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEE------------------------------------------------
Confidence 9999999999999999999999766 222222
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
.+|...|.+++|+|++..|++++.||.|++||.
T Consensus 287 -----------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 287 -----------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -----------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred -----------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 237788999999999999999999999999985
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.1e-38 Score=347.41 Aligned_cols=286 Identities=15% Similarity=0.218 Sum_probs=256.6
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|.+++|+|||++||+|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999987665 6778999999999999999 89999999999999
Q ss_pred E-cCC----ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 481 d-~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
| .++ +....+.+|.+.|.++.|++ ++ .+++++.|++|++||+.++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 443 34577889999999999976 33 5889999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
++. |+.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 986 89999999999999999999887 8999999999999999999999999999999888877655555578999
Q ss_pred EEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1101)
+|+|+|++|++|+.|+.|++||..++ .....+
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~----------------------------------------------- 308 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL----------------------------------------------- 308 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-----------------------------------------------
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC-cEeeEe-----------------------------------------------
Confidence 99999999999999999999998765 111111
Q ss_pred EEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 716 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|...|.+++|+|+|..|++++.||.|++|+
T Consensus 309 ------------------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 ------------------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------------------ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23888999999999999999999999999995
No 23
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=349.45 Aligned_cols=296 Identities=17% Similarity=0.248 Sum_probs=244.5
Q ss_pred ecCCC-cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 341 LHQGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 341 ~~h~~-~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
.+|.+ .|++++|||+|+ +||+|+.|+.|+|||+.++..... .....+|...|.+++|+|||+
T Consensus 12 ~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp CCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEECTTSS
T ss_pred cCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEECCCCC
Confidence 35877 999999999998 569999999999999987754321 112468999999999999999
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---ceeEEeecCCc
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEA 495 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~~~~~~~~h~~ 495 (1101)
+||+|+.|++|++||+.++.. .....+.+|.+.|.+++|+|+++ +|++|+.|++|++|| .++ .++..+.+|..
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred EEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 999999999999999987642 22336889999999999999999 899999999999999 554 34677889999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
.|.+++|+| ++.+|++++.|++|++||.+... ....+..|...|.+++|+|+|++|++++. |+.|++||...
T Consensus 152 ~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW~~~~ 225 (345)
T 3fm0_A 152 DVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIWRQYL 225 (345)
T ss_dssp CEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEEEC
T ss_pred CeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEecccc
Confidence 999999988 56799999999999999998765 34577888999999999999999999986 89999999632
Q ss_pred ---------------CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee----e---EeeccCCCCCC
Q 001319 574 ---------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI----L---TSTDAEGGLPN 631 (1101)
Q Consensus 574 ---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~---~~~~~~~~~~~ 631 (1101)
.+++..+.+.+...+..++|+|++..+++++.|+.|++|+...+.. . ......+|...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 2345566665555899999999999999999999999999875421 1 11112244568
Q ss_pred CCeeEEecCC-CEEEEEEcCCcEEEEEccccc
Q 001319 632 LPRLRFSKEG-NLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 632 v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
|.+++|+|++ .+|++++.||.|++|++.++.
T Consensus 306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 9999999987 599999999999999998763
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-38 Score=353.38 Aligned_cols=292 Identities=15% Similarity=0.165 Sum_probs=238.1
Q ss_pred cCCCcEEEEEEecCCceEEEEEec------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.|...|++|+|||||+ +||+|+. |+.|++|+..++...... .....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEEc
Confidence 5899999999999998 5688887 678999988776543311 11245688999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccc-eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
|++++| +++.||+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 5778999999999988764322 23558999999999999999 899999999999999 889999999999
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEe
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd 570 (1101)
...|.+++|+++.+ .++++++.|++|++||+++++....+. .+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999987543 478899999999999999887765543 455679999999985 56777764 88999999
Q ss_pred CCCCeeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEEEEE
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT 648 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~ 648 (1101)
+.+++.+..+.+|.. .+.+++|+|++ ++|++|+.|++|+|||+.+++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887765 3445899999998 899999999
Q ss_pred cCCcEEEEEcccc
Q 001319 649 ADNGFKILANAIG 661 (1101)
Q Consensus 649 ~d~~i~iwd~~~~ 661 (1101)
.|++|++|++...
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999998765
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=347.43 Aligned_cols=297 Identities=14% Similarity=0.138 Sum_probs=238.3
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCc-cccccccccCCccEEEEEEccCCCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL-PFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.|...|.+++|||||+ +|++++ |+++++||..... |+...... .........|...|.+++|+||+ +
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3667899999999998 567665 7889999843211 10000000 00011123467789999999985 6
Q ss_pred EEEEECCCeEEEEeecCCcccccce-eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~-~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
|++|+.||+|+|||+.+++.+.... .+.+|.+.|++++|+|||+ +|++|+.|++|++|| .+++++..+.+|.+.|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 8899999999999999988765332 3568999999999999999 899999999999999 89999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEEEEccC-CCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
+++|++++. .++++++.|++|++||+++++....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 999987532 588999999999999999988877654 34557899999995 567777775 8999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGF 653 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i 653 (1101)
++..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++++. +. +|...|.+++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999987 89999999998 578899999999999999988654 33 3455899999999886 67789999999
Q ss_pred EEEEcccc
Q 001319 654 KILANAIG 661 (1101)
Q Consensus 654 ~iwd~~~~ 661 (1101)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99998764
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=358.83 Aligned_cols=327 Identities=14% Similarity=0.197 Sum_probs=266.4
Q ss_pred ccCCccEEEEEEccCCC-EEEEEECCCeEEEEee----cCCcccc---cceeeec----------ccCcEEEEEEecCCC
Q 001319 403 KDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSY----AGSNDLR---QHSQIDA----------HVGAVNDLAFAYPNK 464 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~----~~~~~~~---~~~~l~~----------h~~~V~~l~~s~d~~ 464 (1101)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 8877200 0112222 688999999999999
Q ss_pred ceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc----
Q 001319 465 LLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW---- 540 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---- 540 (1101)
+|++++.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.++.....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988999999999999999999987 6689999999999999999998888877777666
Q ss_pred -----------eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 541 -----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 541 -----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
+.+++|++++. +++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 89999999865 555554 88999999998877777766654 56666666666666666666666
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecc
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 689 (1101)
++||+.+++.+..+.
T Consensus 272 ~i~d~~~~~~~~~~~----------------------------------------------------------------- 286 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFY----------------------------------------------------------------- 286 (425)
T ss_dssp EEECSSSBSCSEEEC-----------------------------------------------------------------
T ss_pred EEEECCCCccceEec-----------------------------------------------------------------
Confidence 666654431100000
Q ss_pred ccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCC
Q 001319 690 SSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 769 (1101)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~ 769 (1101)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCe
Q 001319 770 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 848 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i 848 (1101)
.|...|.+++|+|++ ++++++ +|.|++||+.+++.+..+..|...|
T Consensus 287 --------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 287 --------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp --------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred --------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence 155667888888888 776666 8899999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEeecce--------------------EEEeeccCCC--CeeEEEEcCCCCEEEEE
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------VKSKLKGHQK--RITGLAFSTSLNILVSS 906 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--------------------~~~~~~~h~~--~V~~l~~s~d~~~l~s~ 906 (1101)
.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|+++
T Consensus 334 ~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 334 FAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999 89999999999999999999988 8899999977 99999999999999999
Q ss_pred eCCCcEEEEECC
Q 001319 907 GADAQLCVWSID 918 (1101)
Q Consensus 907 s~Dg~v~lwd~~ 918 (1101)
+.||.|++|++.
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999986
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.4e-37 Score=336.31 Aligned_cols=249 Identities=18% Similarity=0.310 Sum_probs=225.8
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+++.+|.+.|.+++|+|||++||+|+.||+|++||+.+++.++ .+.+|..+|.+++|+|+++ +|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEE
Confidence 3588999999999999999999999999999999999987666 6789999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEcc-CCCEEEEe
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-d~~~l~~~ 556 (1101)
|| .+++++..+.+|.+.|.+++|+| ++.+|++++.|++|++||+++... ...+..|...|.+++|+| ++.+++++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99 89999999999999999999987 568999999999999999988744 456788999999999999 67899999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC--CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+. |+.|++||+.++.....+..++...+..+.|+| ++.+|++++.|++|++||+++++.+..+..|.. .|.+
T Consensus 160 s~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~ 233 (304)
T 2ynn_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (304)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEE
Confidence 86 999999999988877777666555788889986 678999999999999999999999999887644 7999
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++|+|++.+|++++.||.|++||..++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999998776
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=355.15 Aligned_cols=357 Identities=13% Similarity=0.181 Sum_probs=279.7
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEec----CCCce------eccccceeecccccCcccc-ccccccCC
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDR------LVSKPFKIWDMAACSLPFQ-ASIFKDVP 406 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~~~~h~ 406 (1101)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ..... .++. .....+|.
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR----------HPFALSASSGKTT 108 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE----------CCCCCC------C
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc----------ccccccccccCCC
Confidence 3344577999999999999834689999999999999 87773 21100 0000 01123478
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
+.|++++|+|+|++||+|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence 8999999999999999999999999999 5555444 6779999999999999999 799999999999999 8899
Q ss_pred eeEEeecCCcC---------------eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC
Q 001319 486 KLFNFEGHEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1101)
Q Consensus 486 ~~~~~~~h~~~---------------v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~ 550 (1101)
.+..+..+... +.+++|+++ ..+++++.|+.|++||+.+......+..+...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 99988888877 889999763 368899999999999999998888888899999999999999
Q ss_pred CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+++++++. ++.|++||+.+++....+.+|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+..
T Consensus 260 ~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 331 (425)
T 1r5m_A 260 KLLLSASD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-- 331 (425)
T ss_dssp TEEEEEET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--
T ss_pred CEEEEEcC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--
Confidence 99999985 88999999999999999988876 89999999999 999999999999999999999888876544
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.|.+++|+|++++|++++.||.|++|++.++......+......
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~------------------------------------ 375 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG------------------------------------ 375 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc------------------------------------
Confidence 79999999999999999999999999998763222222111000
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcc--cEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
.+.......... + ..|.. .|.+++|+|++++|++++.||.|++|++.
T Consensus 376 -----~~~~~~~~~~~~--~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 376 -----ILNPLPIPLYAS--Y---QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --------CEECCEEEE--E---CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred -----ccCcccchhhhh--h---cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 000000011111 1 23544 89999999999999999999999999864
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-36 Score=332.89 Aligned_cols=286 Identities=18% Similarity=0.292 Sum_probs=253.3
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|+|+ ++|+|+.||.|+||++.+++... .+.+|...|.+++|+|++++
T Consensus 20 ~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCE
Confidence 45999999999999998 56899999999999998877654 37789999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++++..+..|..+|.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 9999999999999999988766 6789999999999999999 899999999999999 889999999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
++|++ ++.++++++.|+.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.+++.+.
T Consensus 155 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 155 VHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEE
T ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEE
Confidence 99987 66899999999999999999888776554 34557999999999999999986 8999999999999999
Q ss_pred EecccCCcc--eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE--cCCcEE
Q 001319 579 TYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--ADNGFK 654 (1101)
Q Consensus 579 ~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d~~i~ 654 (1101)
.+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..+. ..|.+++|+|+++++++++ .|+.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALENDKTIK 306 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEccCCccEE
Confidence 998886532 2223334678899999999999999999999998887664 4799999999999999997 699999
Q ss_pred EEEcc
Q 001319 655 ILANA 659 (1101)
Q Consensus 655 iwd~~ 659 (1101)
+|+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99864
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.6e-37 Score=340.58 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=255.2
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478899999999999999999999999999999999887655 5778999999999999999 89999999999999
Q ss_pred E-cCC------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc--CCC
Q 001319 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGS 551 (1101)
Q Consensus 481 d-~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--d~~ 551 (1101)
+ ... .....+.+|.+.|.+++|++ ++..|++++.|++|++||+++++....+..|...|.+++|+| +|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9 322 34567788999999999987 557999999999999999999999999999999999999987 578
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
++++++. |+.|++||+++++++..+.+|.. .+.+++|+|++++|++++.|++|++||++.++.+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999986 89999999999999999999887 899999999999999999999999999999888777765554456
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
+.+++|+|+|++|++++.|+.|++||+.++. .+..+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l------------------------------------------- 322 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL------------------------------------------- 322 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE-------------------------------------------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE-------------------------------------------
Confidence 7899999999999999999999999987652 11111
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|...|.+++|+|+|.+|++++.||.|++|+
T Consensus 323 ----------------------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 ----------------------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ----------------------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ----------------------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 33888999999999999999999999999995
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=340.48 Aligned_cols=297 Identities=12% Similarity=0.130 Sum_probs=230.8
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc-eeeccCCCCCCCCEeEEEec
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL-MANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s 813 (1101)
.+...|.+++|+|||+.+++++ |+++++|+.... .|+...... .........+...|.+++|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 4677899999999999776655 778888874211 111100000 00000001256789999999
Q ss_pred CCCCeEEEEcCCeEEEEECCCceEEEE----eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC
Q 001319 814 KNDSYVMSATGGKISLFNMMTFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 889 (1101)
Q Consensus 814 ~dg~~la~~~dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~ 889 (1101)
||+.+++.+.||+|+|||+.+++.... +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 997655444599999999998875443 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC-CCEEEEEe-CCeEEEEEcCC
Q 001319 890 RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQLAIYDASK 966 (1101)
Q Consensus 890 ~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~-d~~i~v~d~~~ 966 (1101)
.|++++|++++. +|++++.|++|++||+.+++........ .....+.+++|+|+ +.++++++ |+.|++||+.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 999999999985 7899999999999999998754432211 11246889999995 56677754 89999999999
Q ss_pred ceeeeEeccCCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 967 MERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 967 ~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
++.+..+..| ...|++++|+||| ++|++|+.||+|+|||+.++++.. +. +|.. .+.+++|+|+
T Consensus 247 ~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~----------~H~~--~V~~v~~sp~ 310 (344)
T 4gqb_B 247 TSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ----------AHRD--FVRDATWSPL 310 (344)
T ss_dssp --CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC----------CCSS--CEEEEEECSS
T ss_pred CcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec----------CCCC--CEEEEEEeCC
Confidence 9999988765 8999999999998 579999999999999999987653 22 2555 4579999996
Q ss_pred CCCEEEEEECCCeEEEEeCCCCC
Q 001319 1046 EPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1046 d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+..+|++++.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 66788899999999999998754
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=365.65 Aligned_cols=292 Identities=16% Similarity=0.264 Sum_probs=246.9
Q ss_pred CCCcEEEEEEecCCceEEEEE----------eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg----------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
+...|.+++|||+|+.++|+| +.|+.|+|||+.+++.... .....|...|.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~ 73 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDL 73 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEE
Confidence 345899999999998678999 8899999999988763210 0123588999999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCcc-cccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE-cCCc----
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR---- 485 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd-~~~~---- 485 (1101)
+|+|++++||+|+.||.|++||+.+... ......+.+|.+.|++++|+|+ ++ +|++++.|+.|++|| .+++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence 9999999999999999999999987211 1123367899999999999999 66 799999999999999 6655
Q ss_pred --ee---EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------CCceEEEEEccCC-CEE
Q 001319 486 --KL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-SRL 553 (1101)
Q Consensus 486 --~~---~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~d~-~~l 553 (1101)
.. ..+.+|...|.+++|+++. +.++++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 32 2346799999999998752 579999999999999999998888877776 6789999999998 577
Q ss_pred EEeecCCCCCc---eEEEEeCCCC-eeEEEec-ccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCC
Q 001319 554 FSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1101)
Q Consensus 554 ~~~~~~~~~~~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1101)
++++. ++ .|++||++++ .....+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 231 ~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 231 ATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp EEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred EEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 77764 55 9999999986 6677777 7766 899999999 89999999999999999999999998887664
Q ss_pred CCCCCCeeEEecCC-CEEEEEEcCCcEEEEEcccc
Q 001319 628 GLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 628 ~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~ 661 (1101)
. .|.+++|+|++ .+|++++.|+.|++|++.+.
T Consensus 306 ~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 306 N--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp S--CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred C--ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 4 79999999999 89999999999999999876
No 33
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=335.58 Aligned_cols=326 Identities=17% Similarity=0.206 Sum_probs=244.4
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEee-ccCCCCCCCCeeEEecCCCEEEEEEcCCcE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i 653 (1101)
+++.++.+|....+..++|+|+|++|++|+.|++|++||+.++...... ...++...|.+++|+|+|++|++++.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 4667788888768999999999999999999999999999887654322 223455689999999999999999999999
Q ss_pred EEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
++|+...+...
T Consensus 86 ~iw~~~~~~~~--------------------------------------------------------------------- 96 (345)
T 3fm0_A 86 CIWKKNQDDFE--------------------------------------------------------------------- 96 (345)
T ss_dssp EEEEECCC-EE---------------------------------------------------------------------
T ss_pred EEEEccCCCeE---------------------------------------------------------------------
Confidence 99997543100
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
. +.. +. +|...|.+++|+
T Consensus 97 ------------------~--------~~~----------------------------------~~--~h~~~v~~v~~s 114 (345)
T 3fm0_A 97 ------------------C--------VTT----------------------------------LE--GHENEVKSVAWA 114 (345)
T ss_dssp ------------------E--------EEE----------------------------------EC--CCSSCEEEEEEC
T ss_pred ------------------E--------EEE----------------------------------cc--CCCCCceEEEEe
Confidence 0 000 00 277788889999
Q ss_pred CCCCeEEEEc-CCeEEEEECCCc---eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce--EEEeeccC
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLKGH 887 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--~~~~~~~h 887 (1101)
|++++|++++ |+.|++||+.++ .++..+.+|...|.+++|+| ++.+|++|+.|++|++||..+++ +...+.+|
T Consensus 115 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h 193 (345)
T 3fm0_A 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGH 193 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC
Confidence 9999888887 888999998765 45667888999999999999 89999999999999999999875 45788999
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCc
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 967 (1101)
...|++++|+|++++|++++.|++|++|+........ .+.... .+ ...
T Consensus 194 ~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~-------------~~~~~~-----------~~--------~~~ 241 (345)
T 3fm0_A 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ-------------GVACSG-----------SD--------PSW 241 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT-------------CCCCC----------------------CEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc-------------cceeec-----------cC--------Ccc
Confidence 9999999999999999999999999999964422110 010000 00 011
Q ss_pred eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCC
Q 001319 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1047 (1101)
Q Consensus 968 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~ 1047 (1101)
+++..+.. .|...|.+++|++++.+|++++.|+.|++|+...+........ ........+|. ..+.+++|+|+++
T Consensus 242 ~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~--~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 242 KCICTLSG--FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF-SLTAHLHQAHS--QDVNCVAWNPKEP 316 (345)
T ss_dssp EEEEEECS--SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE-EEEEEETTSSS--SCEEEEEECSSST
T ss_pred ceeEEecC--CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE-EEEeeeccccc--CcEeEeEEeCCCc
Confidence 22333333 2488999999999999999999999999999876532100000 00000001244 4567999999655
Q ss_pred CEEEEEECCCeEEEEeCCCCCC
Q 001319 1048 NQFAIGLTDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1048 ~~l~s~~~Dg~v~iWd~~~~~~ 1069 (1101)
.+|++|+.||+|++|++.+.+.
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TEEEEEETTSCEEEEEECC---
T ss_pred eEEEEcCCCCcEEEEEecCCCC
Confidence 7999999999999999998874
No 34
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.3e-37 Score=344.19 Aligned_cols=292 Identities=16% Similarity=0.215 Sum_probs=232.0
Q ss_pred CCCcccEEEEEeecCcccEEEeec------CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeec-cCCCCCCCC
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGS------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND-VAGVNLEEA 806 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~------dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 806 (1101)
..|...|.+++|+|||++|++++. ||.+++|+.. ++...... ....+|...
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 96 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP----------------------EGAPNESLCTAGVQTEAG 96 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC----------------------C---CGGGCSEEEECSSC
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC----------------------CCCcceeEecccCCCCCC
Confidence 348899999999999999999987 4556666533 22211000 011137888
Q ss_pred EeEEEecCCCCeEEEEcCCeEEEEECCCceEEE----EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 807 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMT----TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
|.+++|+|++++++++.||+|++||+.+++... ...+|...|++++|+| ++++|++|+.||+|++||+.+++.+.
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999998887779999999998876543 3447899999999999 99999999999999999999999999
Q ss_pred eeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC-CEEEEE-eCCeE
Q 001319 883 KLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVV-HETQL 959 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~-~d~~i 959 (1101)
.+.+|...|++++|++++. ++++++.||+|++||+.+++....... ......+.+++|+|++ .+|+++ .|+.|
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee----ccccccccchhhhhcccceEEEeecccce
Confidence 9999999999999999875 789999999999999998775543321 1222678999999985 567765 48999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
++||+.+++.+..+..+ ...|++++|+|++ ++|++|+.||+|+|||+++++++..+. |.. .+.
T Consensus 252 ~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~-----------H~~--~V~ 315 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-----------HRD--FVT 315 (357)
T ss_dssp EEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC-----------CSS--CEE
T ss_pred eEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC-----------CCC--CEE
Confidence 99999999999888765 8899999999997 579999999999999999998776543 655 457
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1039 VVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+++|+|.|+.+|+|++.||+|++|++.+..
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999789999999999999999997654
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-36 Score=345.89 Aligned_cols=308 Identities=17% Similarity=0.249 Sum_probs=248.9
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
+...++|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 4456689999999999999994 57775 789999999998876421100000 00000000011123445699999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
||++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++|| .++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999987665 6889999999999999999 799999999999999 7888777776 566
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------cCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
.+.+++|++. ++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|+|+++++++. |+.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999874 5689999999999999999988776555 467788999999999999999986 899999
Q ss_pred EeCCCC------------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
||+.+. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998753 34567778876 789999999999999999999999999999999988876644 799999
Q ss_pred Eec------CCCEEEEEEcCCcEEEEEcccc
Q 001319 637 FSK------EGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 637 ~s~------~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
|++ ++++|++|+.|++|++|++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 876 6889999999999999998643
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.8e-37 Score=345.59 Aligned_cols=320 Identities=13% Similarity=0.175 Sum_probs=264.1
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
.+..|+.....+.+++.+|.. .|.+++|+|++++|++|+.||+|++||..+++....+..+.. .|.+++|+|+|++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 345578888888999999988 899999999999999999999999999999999988887654 79999999999999
Q ss_pred EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCC
Q 001319 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQ 724 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (1101)
++++.|+.+++|++.+.........
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~------------------------------------------------------- 148 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMP------------------------------------------------------- 148 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSST-------------------------------------------------------
T ss_pred EEeeCCCcEEEEECCCCccccCCcc-------------------------------------------------------
Confidence 9999999999999865410000000
Q ss_pred eEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCC
Q 001319 725 CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1101)
....+. +|.
T Consensus 149 ---------------------------------------------------------------------~~~~~~--gh~ 157 (380)
T 3iz6_a 149 ---------------------------------------------------------------------VSRVLT--GHK 157 (380)
T ss_dssp ---------------------------------------------------------------------TCCBCC--CCS
T ss_pred ---------------------------------------------------------------------ceeecc--CCC
Confidence 000001 277
Q ss_pred CCEeEEEecCCC-CeEEEEc-CCeEEEEECCCceEEEEe-----eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-
Q 001319 805 EAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR- 876 (1101)
Q Consensus 805 ~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~- 876 (1101)
..+.+++|+|++ ..|++++ |++|++||+.+++.+..+ .+|...|.+++|++.++.+|++|+.||+|++||+.
T Consensus 158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 778888888864 4678887 899999999999988877 57889999999987688999999999999999997
Q ss_pred cceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC-CCCCCCcceEEEcCCCCEEEEEe
Q 001319 877 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 877 ~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
.++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+++........... ......+.+++|+|+|.+|+++.
T Consensus 238 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence 55778889999999999999999999999999999999999997754433221111 11113589999999999999975
Q ss_pred -CCeEEEEEcCCceeeeEecc-CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 956 -ETQLAIYDASKMERIRQWTP-QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 956 -d~~i~v~d~~~~~~~~~~~~-~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
|+.|++||..+++.+..+.. ..+|...|++++|+|||++|++|+.||+|+||++...+
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999988877643 24569999999999999999999999999999998654
No 37
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-36 Score=338.52 Aligned_cols=296 Identities=17% Similarity=0.273 Sum_probs=242.1
Q ss_pred eecCCCcEEEEEE-----ec-CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE
Q 001319 340 SLHQGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1101)
Q Consensus 340 ~~~h~~~V~~v~f-----sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 413 (1101)
..+|.+.|++++| +| |++ +||+|+.|++|+|||+.+++.... ...+...+.+|...|.+++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEE
Confidence 3459999999999 77 887 679999999999999976543210 0001235789999999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee--
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-- 491 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-- 491 (1101)
|+|++.+|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|++|++||..+.......
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeeeecc
Confidence 99999999999999999999999988665 6889999999999999999 8999999999999995566555544
Q ss_pred -cCCcCeEEEecccCCC--------ccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 492 -GHEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 492 -~h~~~v~~v~~~~~~~--------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+|...|.+++|+|... +.++++++.|++|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---- 233 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK---- 233 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC----
Confidence 7899999999987532 268999999999999994 45566677888899999999999999999986
Q ss_pred CceEEEEeCC-CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE--eecc---------CCCCC
Q 001319 563 DSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDA---------EGGLP 630 (1101)
Q Consensus 563 ~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------~~~~~ 630 (1101)
|+.|++||+. .......+.. . ..+.+++|+|++.+++ ++.|+.|++||+.+++... .+.. .++..
T Consensus 234 dg~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC
T ss_pred CCeEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC
Confidence 9999999994 4444444432 2 2689999999987765 5568889999998776543 3321 13445
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7899999999999999999999999998765
No 38
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.3e-35 Score=380.07 Aligned_cols=554 Identities=13% Similarity=0.088 Sum_probs=393.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+...+.+.+|||+ ++ |.++. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 44 55443 689999998876432 677999999999999999999
Q ss_pred EEECC------CeEEEEeecCCcccccceeeecccCcE-------EEEEEecCCCceEEEEecCC------ceEEEEEcC
Q 001319 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (1101)
Q Consensus 423 s~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V-------~~l~~s~d~~~~~l~s~~~d------~~v~iwd~~ 483 (1101)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999998763 2 577888888 9999999998 67777754 457788854
Q ss_pred CceeEEeecCCcCeEEEecccCCCccEEEEecc------------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC
Q 001319 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1101)
Q Consensus 484 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 551 (1101)
+.....+..+. ...++|+| | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44445554443 34566765 4 7777642 345667754444555556788889999999988 4
Q ss_pred EEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC---
Q 001319 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 627 (1101)
.++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++..... ..+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccc
Confidence 4444432 55666776542 33445555544 35567999999998887 489999999954443 3443321
Q ss_pred ------CCCCCCeeEEe-cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCC
Q 001319 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1101)
Q Consensus 628 ------~~~~v~~v~~s-~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 700 (1101)
+...+..++|+ |||+.|++++ ++.+.+|+..++.. . .+
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~-~~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-L-KV-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-E-EC--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-E-Ec--------------------------------
Confidence 11258899999 9999999888 78899998765511 0 01
Q ss_pred cceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc-cEEEEEeecCcccEEEeecCCeEE-EEEecCCCCCCCCCee
Q 001319 701 CKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGLLALGSNGVQK-LWKWHRNEQNPSGKAT 778 (1101)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~v~-~w~~~~~~~~~~~~~~ 778 (1101)
..+.. .+..++|+ +|+.++.++.++.+. +|+...
T Consensus 333 ---------------------------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~---------- 368 (1045)
T 1k32_A 333 ---------------------------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT---------- 368 (1045)
T ss_dssp ---------------------------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT----------
T ss_pred ---------------------------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC----------
Confidence 11334 67788999 999899888876666 666432
Q ss_pred eeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCC
Q 001319 779 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 857 (1101)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 857 (1101)
+.... +. .+...+..++|||||++|++++ ++.|++||+.+++....+..|...+.+++|+| |
T Consensus 369 ------------~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-D 431 (1045)
T 1k32_A 369 ------------GKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-N 431 (1045)
T ss_dssp ------------CCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-T
T ss_pred ------------CCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-C
Confidence 22111 11 2667899999999999999887 78999999999999888888999999999999 8
Q ss_pred CCEEEEEeCCC----------cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 858 NNIIAIGTEDS----------TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 858 ~~~la~g~~dg----------~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
+++|++++.++ .|++||+.+++ ...+..|...+..++|+|||++|++++.++...+|+.......
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~---- 506 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS---- 506 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE----
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccc----
Confidence 99998887654 89999999888 6777889889999999999999999999999999987643211
Q ss_pred EeecCCCCCCCcceEEEcCCCCEE--EEE--eCCeEEEEEcCCc-eeeeEeccCCCCCCCEEEEEEccCCCEEEE-----
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRM--LVV--HETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFA----- 997 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l--~~~--~d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s----- 997 (1101)
... ...+..+.+++++... +.. .+.....|++... ..+..+..+ ...+..++|+|||+++++
T Consensus 507 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~---~~~~~~~~~s~dg~~~~~~~~~g 578 (1045)
T 1k32_A 507 --FEV---VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD---PGDYRMIIPLESSILIYSVPVHG 578 (1045)
T ss_dssp --CCS---CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC---CBCEEEEEECSSEEEEEECCCCC
T ss_pred --ccc---CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC---CCChhheEEcCCCeEEEEecccC
Confidence 000 0223344445444432 211 1111224555432 223333332 678999999999997775
Q ss_pred --------EeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 998 --------TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 998 --------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
...+..|.+||+.+++..... ..+..++|+| |+..|++++.| .|++||+.+++
T Consensus 579 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----------------~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 579 EFAAYYQGAPEKGVLLKYDVKTRKVTEVK----------------NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCCEEEEE----------------EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccccccCCCceEEEEECCCCcEEEee----------------cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 123557889999988754322 1345789999 79999988876 89999998876
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-38 Score=360.95 Aligned_cols=336 Identities=12% Similarity=0.142 Sum_probs=267.3
Q ss_pred CccEEEEEEccCCC-EEEEE----------ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 406 PISVSRVAWSPDGN-YVGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 406 ~~~v~~~~~spdg~-~las~----------~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
...|.+++|+|||+ +||+| +.|+.|++||+.+++....... ..|...|++++|+|+++ +|++++.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccC
Confidence 34788999999997 99999 8899999999998764322222 36899999999999999 79999999
Q ss_pred ceEEEEE-cC----CceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC------eeee---ccCCCCc
Q 001319 475 KLIKVWE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRVD---YDAPGHW 540 (1101)
Q Consensus 475 ~~v~iwd-~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~---~~~~~~~ 540 (1101)
+.|++|| .+ .+.+..+.+|...|.+++|+++ ++.+|++++.|+.|++||+.+.. .... ...+...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999 44 3588899999999999999875 25799999999999999998876 3332 2456667
Q ss_pred eEEEEEccC-CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 541 CTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 541 v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
|.+++|+|+ +.++++++. ++.|++||+.+++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888888 567777664 677777877777666655543220
Q ss_pred eEeeccCCCCCCCCeeEEecCC-CEEEEEEcCC---cEEEEEccccccccccccCCCcccccCcceeeeeeecccccccc
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 695 (1101)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......+.
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-------------------------- 258 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-------------------------- 258 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--------------------------
Confidence 1113467888888886 5888888888 899998865411111000
Q ss_pred CCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCC
Q 001319 696 GTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 775 (1101)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~ 775 (1101)
T Consensus 259 -------------------------------------------------------------------------------- 258 (416)
T 2pm9_A 259 -------------------------------------------------------------------------------- 258 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEE
Q 001319 776 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF 853 (1101)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 853 (1101)
.+|...|.+++|+| ++++|++++ ||.|++||+.+++.+..+..|...|.+++|
T Consensus 259 -------------------------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 259 -------------------------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp -------------------------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred -------------------------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE
Confidence 01677899999999 899999988 899999999999999999999999999999
Q ss_pred ecCCC-CEEEEEeCCCcEEEEEeecceEEEeec-----------------------------------cCCCCeeEEEEc
Q 001319 854 HPQDN-NIIAIGTEDSTIHIYNVRVDEVKSKLK-----------------------------------GHQKRITGLAFS 897 (1101)
Q Consensus 854 s~~~~-~~la~g~~dg~v~iwd~~~~~~~~~~~-----------------------------------~h~~~V~~l~~s 897 (1101)
+| ++ .+|++++.||.|++|++.+++...... .|..++.+++|+
T Consensus 314 s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 392 (416)
T 2pm9_A 314 AP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWA 392 (416)
T ss_dssp CT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEE
T ss_pred CC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEe
Confidence 99 66 899999999999999998765332211 167788899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q 001319 898 TSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
|||++|++++.|++|+||++.+.
T Consensus 393 ~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 393 FGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TTTEEECBCTTSSCBCCBCCCCC
T ss_pred eCCeEEEEeCCCCeEEEEEeccC
Confidence 99999999999999999999873
No 40
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=334.86 Aligned_cols=290 Identities=16% Similarity=0.217 Sum_probs=229.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccc-c-cCCccEEEEEEccCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRVAWSPDG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~h~~~v~~~~~spdg 418 (1101)
.+|.+.|++++|+|+ +||+|+.|+.|+|||+.++.... . ..+ . +|...|.+++|+|++
T Consensus 11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~----------------~-~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL----------------I-DVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE----------------E-EEECTTCCCSCEEEEEECTTS
T ss_pred ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE----------------E-EEEecCCccCCEEEEEECCCC
Confidence 459999999999998 57999999999999998753211 0 113 3 499999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCc----ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc-CC----ceeEE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG----RKLFN 489 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~-~~----~~~~~ 489 (1101)
++||+|+.|++|+|||+.... .......+.+|.+.|++++|+|+++ +|++|+.|++|++||. .+ +++..
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 999999999999999996432 1223346789999999999999999 8999999999999994 32 45678
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC--CeeeeccCCCCceEEEEEccC--CCEEEEeecCCCCCce
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~~~~~~~ 565 (1101)
+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+.+|...|.+++|+|+ +.++++++. |+.
T Consensus 149 ~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~~ 222 (330)
T 2hes_X 149 LQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DST 222 (330)
T ss_dssp ECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TSC
T ss_pred eccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CCe
Confidence 899999999999988 5689999999999999998766 456778889999999999999 778999886 899
Q ss_pred EEEEeCCCC--------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee--eEeeccCCCCC-CCCe
Q 001319 566 LVEWNESEG--------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLP-NLPR 634 (1101)
Q Consensus 566 i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~~ 634 (1101)
|++||+..+ .....+.+.+...+.+++|++++ .|++++.||.|++||..+++. .... ...+.. .|.+
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~ 300 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINV 300 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEE
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEE
Confidence 999998764 44555655334489999999764 899999999999999987742 2222 123333 6899
Q ss_pred eEEec--CCCEEEEEEcCCcEEEEEccc
Q 001319 635 LRFSK--EGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 635 v~~s~--~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
++|+| ++++|++++.||+|++|++..
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999 789999999999999999864
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.6e-36 Score=329.73 Aligned_cols=296 Identities=18% Similarity=0.284 Sum_probs=251.8
Q ss_pred ccccCCccEEEEEEccCC-CEEEEEECCCeEEEEeecCCccc--ccceeeecccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
++.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 588999999999999965 89999999999999999754321 22346889999999999999999 89999999999
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC------C
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------G 550 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d------~ 550 (1101)
++|| .+++++..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...|.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 89999999999999999999987 56899999999999999986 4566677888899999999985 4
Q ss_pred CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~ 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence 48888885 89999999999999999999887 8999999999999999999999999999999998888754 3
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.|.+++|+|++.+|++++.+ .+++|++... .....+.....
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~------------------------------------- 279 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFA------------------------------------- 279 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCT-------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCcccc-------------------------------------
Confidence 68999999999999988765 5999998755 22221111000
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecC
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~ 768 (1101)
.....+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus 280 --------------------~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 280 --------------------GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp --------------------TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred --------------------ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 00022566789999999999999999999999999753
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.1e-36 Score=334.22 Aligned_cols=299 Identities=22% Similarity=0.307 Sum_probs=256.2
Q ss_pred eeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
+..+| +|.+.|++|+|+|++..+||||+.|++|+|||+.+++.... .+...+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEEC
Confidence 33444 59999999999998544789999999999999987654321 1223578999999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGH 493 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h 493 (1101)
|||++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++|| ... .......+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999876555 5667888999999999999 799999999999999 333 334556789
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
...+..++|++.+...++++++.|+.|++||+.+......+..|...|.+++|+|++++|++++. |+.|++||+.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~ 246 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNE 246 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTT
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEecc
Confidence 99999999998877788999999999999999999999999999999999999999999999986 89999999999
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc-------CCCCCCCCeeEEecCCCEEEE
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
++.+..+..+. .+..++|+|++ .+++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|++|++
T Consensus 247 ~~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 GKHLYTLDGGD--IINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TEEEEEEECSS--CEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CceeeeecCCc--eEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 99999888754 68899999986 556677899999999999887766542 234568999999999999999
Q ss_pred EEcCCcEEEEEcccc
Q 001319 647 TTADNGFKILANAIG 661 (1101)
Q Consensus 647 ~~~d~~i~iwd~~~~ 661 (1101)
|+.||.|++||+.+|
T Consensus 324 gs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 324 GYTDNLVRVWQVTIG 338 (340)
T ss_dssp EETTSCEEEEEEEC-
T ss_pred EeCCCEEEEEeCCCc
Confidence 999999999999887
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-35 Score=325.96 Aligned_cols=289 Identities=20% Similarity=0.312 Sum_probs=255.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999887665 6789999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..+...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88999999999999999999987 5689999999999999999999988888889999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe-
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS- 638 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s- 638 (1101)
++.|++||+.+++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 8899999999999888887666667899999999999999999999999999999998888766543233334444
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
+++.+|++++.||.|++||+.++ ..+..+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~-------------------------------------------------- 275 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK-EIVQKL-------------------------------------------------- 275 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC-CEEEEE--------------------------------------------------
T ss_pred CCCcEEEEECCCCEEEEEECCCc-hhhhhh--------------------------------------------------
Confidence 57889999999999999998766 222222
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee--cCCeEEEEEe
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG--SNGVQKLWKW 766 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~v~~w~~ 766 (1101)
.+|...|.+++|+|++..+++++ .|+.|++|+.
T Consensus 276 ---------------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 276 ---------------QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ---------------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ---------------hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 23778899999999999999886 6899999975
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.2e-36 Score=333.05 Aligned_cols=323 Identities=13% Similarity=0.143 Sum_probs=273.3
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|.+.|.+++|||||+. ++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 5678999999999995 5666666666666544332221 1447999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeee--cccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc--eeEEeecCCcCe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~--~~~~~~~h~~~v 497 (1101)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887665544454 7999999999999999 899999999999999 6665 567788999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999987 5689999999999999999999888888889999999999999999999985 899999999999988
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
..+.. . ..+..++|+|+++++++++.++.|++||+.+++... +.. +...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88753 3 368999999999999999999999999999887653 333 345799999999999999999999999999
Q ss_pred ccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCc
Q 001319 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTS 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
+.++.... . ..+.
T Consensus 294 ~~~~~~~~-~------------------------------------------------------------------~~~~ 306 (337)
T 1gxr_A 294 TPYGASIF-Q------------------------------------------------------------------SKES 306 (337)
T ss_dssp TTTCCEEE-E------------------------------------------------------------------EECS
T ss_pred CCCCeEEE-E------------------------------------------------------------------ecCC
Confidence 87662110 0 1156
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
..+.++.|+|+++.+++++.||.+++|++
T Consensus 307 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 77899999999999999999999999986
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.9e-36 Score=344.01 Aligned_cols=344 Identities=9% Similarity=0.099 Sum_probs=282.2
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999999887665 34455 4556667899999 899999999999999 7788
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
....+.+|.+.|.+++|++ ++.+|++++.|+.|++||+.+++....+..|...|.+++|+|+++++++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 8888889999999999987 5689999999999999999999988889999999999999999999999986 889
Q ss_pred EEEEeCCCCeeEEEecccC--CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 566 LVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
|++||+.+++.+..+..+. ...+..+++.+.+... .... +...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEI--STSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGG--CCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeec--ccCcccceEEcCCCCE
Confidence 9999999999999988643 2357777776654321 1111 1336899999999999
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCC
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSG 723 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 723 (1101)
|++++.||.|++||+.++..... +
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~-~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQ-L------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE-E-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEE-c-------------------------------------------------------
Confidence 99999999999999875511000 0
Q ss_pred CeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCC
Q 001319 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1101)
. ..|
T Consensus 286 --------------------------------------------------------------------------~--~~~ 289 (420)
T 3vl1_A 286 --------------------------------------------------------------------------P--SKF 289 (420)
T ss_dssp --------------------------------------------------------------------------C--CTT
T ss_pred --------------------------------------------------------------------------c--ccc
Confidence 0 016
Q ss_pred CCCEeEEEecCCCC-eEEEEc-CCeEEEEECCCceE-EEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-
Q 001319 804 EEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKV-MTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD- 878 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~- 878 (1101)
...|.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++|++.+.
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTT
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCC
Confidence 67899999999998 888887 89999999988754 666666 6667888855 4 5789999999999999999873
Q ss_pred --------eEEEeeccCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 001319 879 --------EVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 879 --------~~~~~~~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~ 919 (1101)
.....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 368 SERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 12234567899999999999999 788888899999999865
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-36 Score=345.31 Aligned_cols=332 Identities=15% Similarity=0.150 Sum_probs=269.5
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
..+++++|+|+|++ +++|+.|+.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999996 5889999999999998776543 24445 456666899999999999
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecc
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
+.|+.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|.+.|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887655 5679999999999999999 899999999999999 8899999999999999999998
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCeeeeccCC---C---------------------CceEEEEEccCCCEEEEeecC
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---G---------------------HWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~---------------------~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ ++.+|++++.|++|++||+++++....+..+ . ..+.+++|+|+++++++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 7 5689999999999999999998887766542 2 33444556889999999985
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCCee-eEeeccCCCCCCCCeeEE
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~ 637 (1101)
++.|++||+.+++....+...+...+.+++|+|+++ +|++++.||.|++||+.+++. +..+..+. ...|.++.
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~- 342 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVY- 342 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEE-
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEE-
Confidence 889999999999988888765555899999999998 999999999999999998754 55555432 33677774
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
.+++++|++++.|+.|++|++............
T Consensus 343 ~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~----------------------------------------------- 375 (420)
T 3vl1_A 343 FAAGALFVSSGFDTSIKLDIISDPESERPAIEF----------------------------------------------- 375 (420)
T ss_dssp EETTEEEEEETTTEEEEEEEECCTTCCSCEECT-----------------------------------------------
T ss_pred eCCCCEEEEecCCccEEEEeccCCCCCccceec-----------------------------------------------
Confidence 557889999999999999998764211111000
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc---cEEEeecCCeEEEEEec
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV---GLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~v~~w~~~ 767 (1101)
.....+ ..+...|..++|+|++. .+++++.+|.+.+|++.
T Consensus 376 -----~~~~~~-----~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 376 -----ETPTFL-----VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp -----TSCEEE-----CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred -----cCccEE-----ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 000000 33778899999999999 89999999999999864
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=319.94 Aligned_cols=307 Identities=15% Similarity=0.211 Sum_probs=232.9
Q ss_pred CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+.+++..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ .....+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566778888887 8999999987 9999999999999999875 344444322255589999999999999999999
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
++|++|+........ ..
T Consensus 80 ~~v~iw~~~~~~~~~--~~------------------------------------------------------------- 96 (330)
T 2hes_X 80 STVSIWAKEESADRT--FE------------------------------------------------------------- 96 (330)
T ss_dssp SCEEEEEC---------CC-------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc--cc-------------------------------------------------------------
Confidence 999999975321000 00
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
.. . +.. +. +|...|.++
T Consensus 97 ------------------~~-~--------~~~----------------------------------~~--~h~~~V~~v 113 (330)
T 2hes_X 97 ------------------MD-L--------LAI----------------------------------IE--GHENEVKGV 113 (330)
T ss_dssp ------------------CE-E--------EEE----------------------------------EC------CEEEE
T ss_pred ------------------ce-e--------EEE----------------------------------Ec--CCCCcEEEE
Confidence 00 0 000 00 278889999
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc--eEEEe
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSK 883 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~--~~~~~ 883 (1101)
+|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++ +++..
T Consensus 114 ~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~ 192 (330)
T 2hes_X 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAV 192 (330)
T ss_dssp EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEE
Confidence 9999999999998 89999999842 356778899999999999999 8999999999999999999876 67889
Q ss_pred eccCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCccccc---eEEeecCCCCCCCcceEEEcCCCCEEEEEeCCe
Q 001319 884 LKGHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 958 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~ 958 (1101)
+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++..... .......+.....+.+++|++++.++.++.|+.
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~ 272 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV 272 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSC
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCE
Confidence 9999999999999999 77999999999999999976532111 222333332337899999998875444467999
Q ss_pred EEEEEcCCcee--eeEeccCCCCCC-CEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC
Q 001319 959 LAIYDASKMER--IRQWTPQDALSA-PISCAVYSC--NSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 959 i~v~d~~~~~~--~~~~~~~~~h~~-~v~~v~~s~--dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
|++|+..+++. ..... .+|.. .|.+++|+| ++++|++|+.||+|++||+++
T Consensus 273 v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999987742 32221 23355 899999999 789999999999999999865
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.8e-35 Score=326.68 Aligned_cols=320 Identities=15% Similarity=0.218 Sum_probs=271.0
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
|.+.|.+++|||||++++++..++.+.+|+........ ...+|...|++++|+|+++ ++++++ |+.|++|| .+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 56789999999999999999887777777554432222 3458999999999999999 788888 99999999 55
Q ss_pred Cce---eEEee--cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 484 GRK---LFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 484 ~~~---~~~~~--~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+.. +..+. +|...|.+++|++ ++++|++++.|+.|++||+.+.+ ....+..+...+.+++|+|++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 543 33333 7999999999987 66899999999999999999877 455677788889999999999999999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+. ++.|++||+.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+... ..+.+++
T Consensus 160 ~~----dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~ 231 (337)
T 1gxr_A 160 CS----DGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLG 231 (337)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEE
T ss_pred eC----CCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---CceEEEE
Confidence 85 88999999999999999998876 8999999999999999999999999999999988877543 3689999
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|+++++++++.++.|++|++.+... . .
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~~-~-~------------------------------------------------- 260 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPDK-Y-Q------------------------------------------------- 260 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSCE-E-E-------------------------------------------------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCe-E-E-------------------------------------------------
Confidence 999999999999999999999865410 0 0
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
T Consensus 261 -------------------------------------------------------------------------------- 260 (337)
T 1gxr_A 261 -------------------------------------------------------------------------------- 260 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEe
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 875 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~ 875 (1101)
.. .|...+.+++|+|+++++++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++
T Consensus 261 -~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 261 -LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred -Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 00 1667789999999999999887 899999999998887554 4788999999999 8999999999999999997
Q ss_pred e
Q 001319 876 R 876 (1101)
Q Consensus 876 ~ 876 (1101)
.
T Consensus 336 ~ 336 (337)
T 1gxr_A 336 I 336 (337)
T ss_dssp E
T ss_pred e
Confidence 4
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-34 Score=320.77 Aligned_cols=299 Identities=19% Similarity=0.305 Sum_probs=241.5
Q ss_pred ccccCCccEEEEEE-----cc-CCCEEEEEECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEE
Q 001319 401 IFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~-----sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s 470 (1101)
++.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|++++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 9999999999999999999865421 22336789999999999999999 8999
Q ss_pred ecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc---CCCCceEEEEE
Q 001319 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (1101)
Q Consensus 471 ~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 546 (1101)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+... ...... .+...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999 88999999999999999999987 6689999999999999999743 333322 56778999999
Q ss_pred ccCC----------CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 547 SADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 547 s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
+|++ .++++++. ++.|++|| ..++....+.+|.. .+.+++|+|++++|++|+.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68999886 89999999 55677788888877 899999999999999999999999999944
Q ss_pred -CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccc-ccccCCCcccccCcceeeeeeeccccccc
Q 001319 617 -VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL-RAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 617 -~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
......+.. . ..|.+++|+|++.+++++ .|+.|++|++.+..... ..+...... .
T Consensus 245 ~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~---------------~---- 301 (343)
T 2xzm_R 245 LTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPIT---------------K---- 301 (343)
T ss_dssp CSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGG---------------G----
T ss_pred CcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcch---------------h----
Confidence 434444432 2 258999999999888755 57889999987652110 011100000 0
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~ 768 (1101)
.....+|...|.+++|+|+|+.|++++.||.|++|++..
T Consensus 302 -----------------------------------~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 302 -----------------------------------AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp -----------------------------------BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred -----------------------------------hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 000034778899999999999999999999999998753
No 50
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.1e-35 Score=359.55 Aligned_cols=294 Identities=20% Similarity=0.297 Sum_probs=251.1
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
..+|.+.|++|+|+|++..+|++|+.|++|+|||+.+...... .....+.+|...|.+++|+|||+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence 3469999999999998766889999999999999986543211 01134789999999999999999
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEe----ecCCc
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEA 495 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~h~~ 495 (1101)
+|++|+.|++|+|||+.+++..+ .+.+|...|.+++|+|+++ +|++|+.|++|++||..+.+...+ .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987666 6789999999999999999 799999999999999555554443 46899
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|+|+++++++. |+.|++||+.+++
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGK 594 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 999999998665578999999999999999999998899999999999999999999999986 8999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC-----------------CCCCCeeEEe
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLRFS 638 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s 638 (1101)
.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+++|+
T Consensus 595 ~~~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 595 KLYSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp EEECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred eEEEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 88877654 3689999999987776665 56699999999988876653211 1135789999
Q ss_pred cCCCEEEEEEcCCcEEEEEcc
Q 001319 639 KEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
|+|++|++|+.||.|++|++.
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999975
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-36 Score=346.99 Aligned_cols=382 Identities=12% Similarity=0.137 Sum_probs=278.2
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEEEEECCCe
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~las~~~d~~ 429 (1101)
.|+|+++. +++++ .|+. +++.+.. ...+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 37888884 45543 4874 3554431 2388999999999999 9999999999999
Q ss_pred EEEEeecC---CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc----CCceeEEeecCCcCeEEEec
Q 001319 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL----SGRKLFNFEGHEAPVYSICP 502 (1101)
Q Consensus 430 i~vwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~----~~~~~~~~~~h~~~v~~v~~ 502 (1101)
|+|||+.+ +........+ +|.+.|++++|+|+++ +|++|+.|++|++||. +++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433322233 6999999999999999 8999999999999993 67777777666 6777777
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE--EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
++.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 6532 112233444 6789999999986 899999999999999999
Q ss_pred cc--cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe----cCCCEEEEEEcCCcEE
Q 001319 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS----KEGNLLAVTTADNGFK 654 (1101)
Q Consensus 581 ~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~g~~l~~~~~d~~i~ 654 (1101)
.+ |.. .+.+++|+|++++|++|+.||.|++||+++++.+..+.... ...|.+++|+ +++.+|++++.|+.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 88 554 89999999999999999999999999999999988875322 3378999554 5688999999999999
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
+||+.++ .....+..
T Consensus 287 iwd~~~~-~~~~~~~~---------------------------------------------------------------- 301 (437)
T 3gre_A 287 IWNFVKG-HCQYAFIN---------------------------------------------------------------- 301 (437)
T ss_dssp EEETTTT-EEEEEEES----------------------------------------------------------------
T ss_pred EEEcCCC-cEEEEEEc----------------------------------------------------------------
Confidence 9999876 33333322
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
|...+..+.|+|+++.+ .+.. +.+..|...|.+++|+
T Consensus 302 -~~~~~~~~~~~~~~~~l----~~~~-------------------------------------~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 302 -SDEQPSMEHFLPIEKGL----EELN-------------------------------------FCGIRSLNALSTISVS- 338 (437)
T ss_dssp -SSSCCCGGGGSCBCSSG----GGCC-------------------------------------CCCCCSGGGGCCEEEE-
T ss_pred -CCCCCccceeccccccc----ccce-------------------------------------ecccccCCceEEEEEC-
Confidence 22222223333433322 0000 0111277889999999
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCC---CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 890 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 890 (1101)
++++|++++ ||.|++||+.+++....+.+|.. .+....+++ ...+++.. |+...+.....+..|.+.
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~ 409 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDI 409 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCC
T ss_pred CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccc
Confidence 888999998 99999999999999998887643 345566666 44444433 333344445666789999
Q ss_pred eeEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001319 891 ITGLAFSTS--LNILVSSGADAQLCVWS 916 (1101)
Q Consensus 891 V~~l~~s~d--~~~l~s~s~Dg~v~lwd 916 (1101)
|++++|+++ +.+|++|+.||.|++|+
T Consensus 410 I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 410 INSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 999999998 77999999999999995
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.7e-35 Score=330.40 Aligned_cols=291 Identities=13% Similarity=0.184 Sum_probs=242.9
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DG 418 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg 418 (1101)
..+|.+.|++++|+|+|..+||+|+.||.|+|||+.+++.... ....+|...|.+++|+| ++
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCSTTCBEEEEEEETTEE
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCcCCceeEEEeCCCCC
Confidence 3459999999999999933679999999999999998765431 11347999999999999 78
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
++|++++.|+.|++||+.+ ..+..+....+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|.
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCEE
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcEE
Confidence 9999999999999999996 44443333345568899999999999 89999999999999988999999999999999
Q ss_pred EEecccCCCcc-EEEEeccCCeEEEEecCC----CCeeeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCC
Q 001319 499 SICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 499 ~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
+++|++ ++. ++++++.|+.|++||+++ ......+ .+...|.+++|+| +++++++++. ++.|++||+.
T Consensus 209 ~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~ 281 (383)
T 3ei3_B 209 HAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSY 281 (383)
T ss_dssp EEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETT
T ss_pred EEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECC
Confidence 999987 446 899999999999999987 4444444 5788999999999 9999999985 8999999999
Q ss_pred CCeeEEEecccCC----------------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 573 EGTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 573 ~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~ 359 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK 359 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE
Confidence 9888777765431 12333566666665 66789999999999999999998765555677889
Q ss_pred EecCCCEEEEEEcCCcEEEEEccc
Q 001319 637 FSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
|+|++++|++++ |+.|++||+++
T Consensus 360 ~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 360 FSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCccEEEEec-CCcEEEEecCC
Confidence 999999999997 89999999864
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=348.46 Aligned_cols=343 Identities=11% Similarity=0.096 Sum_probs=235.1
Q ss_pred CCccEEEEEEccCC---------CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 405 h~~~v~~~~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57799999999987 899999866420 01368888 799999999
Q ss_pred eEEEEE-cCCcee----EEeecCCcCeEEEecccC----CCccEEEEeccCCeEEEEecCCCCe-----------eeecc
Q 001319 476 LIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (1101)
Q Consensus 476 ~v~iwd-~~~~~~----~~~~~h~~~v~~v~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~ 535 (1101)
+|+||| .+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 555542 456778899999999986 3467999999999999999976542 23566
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcceEEE--EEeCCC-CEEEEEeCCCcEEE
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 611 (1101)
.|...|++++|++++ .|++|+. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999865 7888885 9999999999764 4556788877 78888 578887 89999999999999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccc
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 691 (1101)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++. ....+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l----------------------- 393 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPL----------------------- 393 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEE-----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceee-----------------------
Confidence 999988776665544322357899999999999999999999999987541 11000
Q ss_pred ccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCC
Q 001319 692 AVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 771 (1101)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~ 771 (1101)
.
T Consensus 394 ------------------------------------------~------------------------------------- 394 (524)
T 2j04_B 394 ------------------------------------------V------------------------------------- 394 (524)
T ss_dssp ------------------------------------------E-------------------------------------
T ss_pred ------------------------------------------e-------------------------------------
Confidence 0
Q ss_pred CCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC-----CC
Q 001319 772 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-----PP 845 (1101)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-----~~ 845 (1101)
+|...|.+++|+|+|++|++|+ ||+|++||+... ....... +.
T Consensus 395 ------------------------------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~ 443 (524)
T 2j04_B 395 ------------------------------SRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKS 443 (524)
T ss_dssp ------------------------------ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCC
T ss_pred ------------------------------cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceee
Confidence 1555666666666666666665 666666665432 1111110 11
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cceEEEeeccCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 001319 846 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~ 919 (1101)
..+.+++|+| ++..+ .... .+++|+.. ++.++..+.+|...|.+++|+|++. ++|+|+.||.|+||++..
T Consensus 444 ~~v~~v~~sp-~g~~~-~~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 444 LRLWKWDYSI-KDDKY-RIDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CEEEECBCCS-SSCEE-EECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eEEEEeccCC-CCCeE-EccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2467889999 77755 2222 34444443 5677888999999999999999964 999999999999999876
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-34 Score=324.97 Aligned_cols=303 Identities=12% Similarity=0.258 Sum_probs=234.2
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC------------------CceEEEEEccCCCEE
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------------------HWCTTMLYSADGSRL 553 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------------------~~v~~~~~s~d~~~l 553 (1101)
+|.+.|.+++|+| +|++|++++ ++.+++|++.+++....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 5999999999987 668999876 7899999999888776655432 248999999999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.|++|++||+.+++....+..+. .+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcE
Confidence 99986 89999999999999999999987 89999999999999999999999999999999887776433 589
Q ss_pred eeEEec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 634 RLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 634 ~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
+++|+| ++++|++++.|+.|++||+.++. ....+....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~---------------------------------------- 249 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSEN---------------------------------------- 249 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccc----------------------------------------
Confidence 999999 89999999999999999987652 111110000
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcc
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 792 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1101)
....+|...|.+++|+|+++.+++++.||.|++||+.....
T Consensus 250 ------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~--------------------- 290 (393)
T 1erj_A 250 ------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN--------------------- 290 (393)
T ss_dssp ---------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------
T ss_pred ------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC---------------------
Confidence 00012444455555555555555555555555554321000
Q ss_pred ceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEE
Q 001319 793 LMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~i 872 (1101)
..... ....+.+...+.+|...|.+++|+| ++.+|++|+.||.|++
T Consensus 291 --------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 291 --------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLF 336 (393)
T ss_dssp -------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEE
T ss_pred --------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 00000 0012345567788999999999999 8999999999999999
Q ss_pred EEeecceEEEeeccCCCCeeEEEEcC------CCCEEEEEeCCCcEEEEECCC
Q 001319 873 YNVRVDEVKSKLKGHQKRITGLAFST------SLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 873 wd~~~~~~~~~~~~h~~~V~~l~~s~------d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
||+.+++.+..+.+|.+.|.+++|++ ++++|++|+.||+|++|++..
T Consensus 337 wd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999999999999999999986 688999999999999999865
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=348.60 Aligned_cols=342 Identities=9% Similarity=0.068 Sum_probs=248.5
Q ss_pred CcceeEeecCCCcEEEEEEecCC---------ceEEEE-------------------EeccCcEEEEecCCCceeccccc
Q 001319 334 PRTVAVSLHQGSTVISMDFHPSH---------QTLLLV-------------------GSSNGEITLWELAMRDRLVSKPF 385 (1101)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg---------~~llas-------------------g~~d~~i~iwd~~~~~~~~~~~~ 385 (1101)
......++.+.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++....
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--- 198 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--- 198 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEE---
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce---
Confidence 45555666678889999999886 4 3455 45778999999987764210
Q ss_pred eeecccccCccccccccccCCccEEEEEEccC------CCEEEEEECCCeEEEEeecCCccc--------ccceeeeccc
Q 001319 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPD------GNYVGVAFTKHLIQLYSYAGSNDL--------RQHSQIDAHV 451 (1101)
Q Consensus 386 ~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd------g~~las~~~d~~i~vwd~~~~~~~--------~~~~~l~~h~ 451 (1101)
...++.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.. .....+.+|.
T Consensus 199 ------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 199 ------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp ------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred ------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 01125668899999999997 679999999999999999877532 1223678999
Q ss_pred CcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCCcCeEEEecccCCCc-cEEEEeccCCeEEEEecCCC
Q 001319 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 452 ~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~ 528 (1101)
..|++++|++++ .|++|+.||+|++|| .++ .+...+.+|.+.|.+|++...+++ .+|++++.|++|++||+++.
T Consensus 267 ~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 267 SLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp TCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 999999999864 599999999999999 555 345678999999999943223355 79999999999999999887
Q ss_pred CeeeeccCCC--CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 529 GSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 529 ~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
+....+..+. ..|.+++|+|+++.+++++. ++.|++||++++.++..+.+|.. .|.+++|+|++++|++|+.|
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETT
T ss_pred CcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECC
Confidence 6655544433 24789999999999998875 78999999999998888988877 89999999999999999999
Q ss_pred CcEEEEECCCCeeeEeeccC---CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc-ccccccccccCCCcccccCccee
Q 001319 607 SQIKFWDMDNVNILTSTDAE---GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA-IGLRSLRAVENPPFEALRTPIES 682 (1101)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~ 682 (1101)
|+|++||+..+ .+...... .....+..++|+|++..+. ... .+.+|+.. ++ ....
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g-~~~~---------------- 477 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVND-VSKA---------------- 477 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC--------------------------
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCC-ccee----------------
Confidence 99999998654 22221110 0111356889999987442 111 12222111 01 0000
Q ss_pred eeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc---cEEEeecCC
Q 001319 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV---GLLALGSNG 759 (1101)
Q Consensus 683 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg 759 (1101)
.+ .+|...|.+++|+|++. .+++++.+|
T Consensus 478 ----------------------------------------------~l---~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 478 ----------------------------------------------KI---DAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp -----------------------------------------------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred ----------------------------------------------ee---cCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 01 34778899999999964 788888899
Q ss_pred eEEEEEecCC
Q 001319 760 VQKLWKWHRN 769 (1101)
Q Consensus 760 ~v~~w~~~~~ 769 (1101)
.|++|++...
T Consensus 509 ~vrlw~l~~~ 518 (524)
T 2j04_B 509 LLTLEYLSLE 518 (524)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEcccc
Confidence 9999997643
No 56
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.5e-33 Score=361.12 Aligned_cols=531 Identities=11% Similarity=0.026 Sum_probs=379.1
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc------CcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+|..+.......+...|...|.+++|||||++| |.++.+ ..|.+|++.+++..
T Consensus 35 l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~l-a~~s~~~~~~~~~~i~~~d~~~g~~~-------------------- 93 (1045)
T 1k32_A 35 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKI-AIRVMRGSSLNTADLYFYNGENGEIK-------------------- 93 (1045)
T ss_dssp EEEEETTTCCEEEEECSSSEEEEEEECTTSSEE-EEEEEESTTCCEEEEEEEETTTTEEE--------------------
T ss_pred EEEEECCCCcEEEeeeCCCcccCeEECCCCCEE-EEEEeeccCCCCCeEEEEECCCCCeE--------------------
Confidence 444443445566667799999999999999965 555433 48999999887642
Q ss_pred ccccCCccE-------EEEEEccCCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceE
Q 001319 401 IFKDVPISV-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (1101)
Q Consensus 401 ~~~~h~~~v-------~~~~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~ 467 (1101)
.+..|...+ .+++|||||+.+++++.+ ..|.+||+.+++... +..+ ....++|+| | +
T Consensus 94 ~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~ 163 (1045)
T 1k32_A 94 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---R 163 (1045)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---E
T ss_pred EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---E
Confidence 266788888 999999999977777644 458888888875432 3233 235677999 6 4
Q ss_pred EEEecC------------CceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC-Ceeee
Q 001319 468 VVTCGD------------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVD 533 (1101)
Q Consensus 468 l~s~~~------------d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 533 (1101)
+++++. +...++|. ..+.....+.+|...+.+++|++ + .++++++.|+.+++|.++.. .....
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceE
Confidence 666542 34567776 43355667789999999999975 4 57778888999999987653 33334
Q ss_pred ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC----------CcceEEEEEe-CCCCEEEE
Q 001319 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQFD-TTQNHFLA 602 (1101)
Q Consensus 534 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~ 602 (1101)
+..+. .+...+|+|||++++++. ++.|++||....+.. .+.++. ...+..++|+ |+|+++++
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 44333 466779999999999874 778999999554443 555421 1257789999 99999998
Q ss_pred EeCCCcEEEEECCCCeeeEeeccCCCCC-CCCeeEEecCCCEEEEEEcCCcEE-EEEccccccccccccCCCcccccCcc
Q 001319 603 VGEDSQIKFWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVENPPFEALRTPI 680 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~g~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1101)
++ ++.|++|+...++... +.. +.. .+..++|+ ||+.|++++.++.+. +|+..++.. ..+
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l------------ 374 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKF------------ 374 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EEC------------
T ss_pred EE-cCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEe------------
Confidence 87 7899999998877554 322 222 57889999 999999999887788 888765411 000
Q ss_pred eeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCe
Q 001319 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 760 (1101)
Q Consensus 681 ~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 760 (1101)
..+...+..++|+|||+.+++++.++.
T Consensus 375 -----------------------------------------------------~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 375 -----------------------------------------------------EENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp -----------------------------------------------------CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred -----------------------------------------------------cCCccceeeeEECCCCCEEEEECCCCe
Confidence 114567788999999999999999999
Q ss_pred EEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC----------eEEE
Q 001319 761 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----------KISL 829 (1101)
Q Consensus 761 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg----------~i~v 829 (1101)
+++|++.. +..... .. .+...+.+++|||||++|++++ ++ .|++
T Consensus 402 v~~~d~~t----------------------g~~~~~-~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 402 IMTVDLET----------------------GKPTVI-ER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EEEEETTT----------------------CCEEEE-EE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred EEEEECCC----------------------CceEEe-cc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 99998643 222111 11 2677788999999999998876 33 7999
Q ss_pred EECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEE--EEEe
Q 001319 830 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL--VSSG 907 (1101)
Q Consensus 830 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l--~s~s 907 (1101)
||+.+++ ...+..|...+..++|+| ++++|+.++.++...+|+....... ..+...+..+.+++++... +..+
T Consensus 457 ~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1045)
T 1k32_A 457 YDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFS---FEVVSKPFVIPLIPGSPNPTKLVPR 531 (1045)
T ss_dssp EETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEE---CCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred EECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccc---cccCceeEEEEeCCCCCCccccCcC
Confidence 9999887 667777888899999999 9999999999999999987644332 2245566777777766543 3222
Q ss_pred CC-CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE--------------EeCCeEEEEEcCCceeeeE
Q 001319 908 AD-AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--------------VHETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 908 ~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--------------~~d~~i~v~d~~~~~~~~~ 972 (1101)
.+ ...+.|++..... .... ...+. ..+..++++|||..+++ .....+.+||+.+++....
T Consensus 532 ~~~~~~~~~d~~g~~~-~~~~---l~~~~-~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l 606 (1045)
T 1k32_A 532 SMTSEAGEYDLNDMYK-RSSP---INVDP-GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV 606 (1045)
T ss_dssp GGSCCCCCCCCTTGGG-GCEE---CSCCC-BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE
T ss_pred ccccccccccccCHhH-ceEE---cCCCC-CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe
Confidence 22 2223455543211 1111 11121 56788999999987775 1245788999988875433
Q ss_pred eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 973 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 973 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
. ..+..++|||||++|++++.| .|++||+.+++
T Consensus 607 ~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 607 K-------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E-------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred e-------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 2 457899999999999999866 89999998877
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-33 Score=326.98 Aligned_cols=292 Identities=16% Similarity=0.252 Sum_probs=249.4
Q ss_pred ccccCCCCcceeEeecCCCcE-EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V-~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 405 (1101)
.|.............+|.+.| .+++|+ ++ ++++|+.||.|++||+.+++.+. .+.+|
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h 161 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGH 161 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCC
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCC
Confidence 444444444444555688774 666664 55 56899999999999999987665 37789
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec--CCCceEEEEecCCceEEEEE-c
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.+.|.+++|+|++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCC
Confidence 9999999999998 99999999999999999988665 6789999999999995 556 899999999999999 5
Q ss_pred CCc-----------------------eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC
Q 001319 483 SGR-----------------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1101)
Q Consensus 483 ~~~-----------------------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 539 (1101)
++. .+..+.+|...|.++.. ++.++++++.|+.|++||+.+.+....+..|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 543 25577889999998853 557999999999999999999999999999999
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
.|.+++|+|+++++++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp CEEEEEEETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 9999999999999999986 89999999999999999999887 78888887 57999999999999999999877
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
...... ...+..++|+++++++++++ |+.|++||+.++
T Consensus 385 ~~~~~~---~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 385 KFSYHH---TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEC---TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eeeecC---CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 666542 22578899999999999998 899999999887
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=319.36 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=255.3
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.....+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVDC 84 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECT
T ss_pred cEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEcC
Confidence 344556999999999999998 56899999999999999887665 3778999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC-----ceEEEEE-cCCc-----
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR----- 485 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~v~iwd-~~~~----- 485 (1101)
++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999999999999988766 344 888999999999999 78998888 9999999 4432
Q ss_pred ------eeEEeecCCc--CeEEEecccCCCccEEEEeccCCeEEEEecCC-CCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 486 ------KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 486 ------~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
.+..+..|.+ .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 4455666776 899999987 668999999999999999998 66777888888999999999999999999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC--------------cEEEEECCCCeeeEe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILTS 622 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~ 622 (1101)
+. ++.|++||+.+++.+..+.. ...+..++|+|+++++++++.++ .+++||..+++.+..
T Consensus 237 ~~----d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 237 SR----DTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp ET----TSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred cC----CceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 85 88999999999999988883 23688999999999999999888 899999999999988
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+..+.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 311 ~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 311 VQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred eecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 876644 8999999999999999999999999999876
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.4e-34 Score=326.17 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=250.6
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC---
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--- 417 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--- 417 (1101)
.+|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|+
T Consensus 13 ~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~ 76 (397)
T 1sq9_A 13 KAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQAIER 76 (397)
T ss_dssp SCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEEEEET
T ss_pred hhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEeccccc
Confidence 35999999999999 4 57899999999999999876211000 01236789999999999999
Q ss_pred -C---CEEEEEECCCeEEEEeecCCcc-----cccceeeecc-----cCcEEEEEEe----cCCCceE-EEEecCCceEE
Q 001319 418 -G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDDKLIK 478 (1101)
Q Consensus 418 -g---~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h-----~~~V~~l~~s----~d~~~~~-l~s~~~d~~v~ 478 (1101)
| ++|++++.|+.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|+.|+
T Consensus 77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTY 151 (397)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEE
T ss_pred CCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEE
Confidence 9 9999999999999999999876 44 56778 5899999999 9999 7 99999999999
Q ss_pred EEE-cC------CceeE-----Eee-------cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC---
Q 001319 479 VWE-LS------GRKLF-----NFE-------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--- 536 (1101)
Q Consensus 479 iwd-~~------~~~~~-----~~~-------~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--- 536 (1101)
+|| .+ ++.+. .+. .|...|.+++|++ ++ ++++++.|+.|++||+++......+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 999 66 66666 774 4889999999987 66 999999999999999999888888887
Q ss_pred C---CCceEEEEEccCCCEEEEeecCCCCC---ceEEEEeCCCCeeEEEecc-------------cCCcceEEEEEeCCC
Q 001319 537 P---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 537 ~---~~~v~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~ 597 (1101)
| ...|.+++|+|+++++++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCC
Confidence 7 889999999999999999986 7 8999999999999999988 665 89999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeec------cC-------------CCCCCCCeeEEecCC----------CEEEEEE
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLLAVTT 648 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~g----------~~l~~~~ 648 (1101)
++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999998887 43 014579999999998 7999999
Q ss_pred cCCcEEEEEcccc
Q 001319 649 ADNGFKILANAIG 661 (1101)
Q Consensus 649 ~d~~i~iwd~~~~ 661 (1101)
.||.|++|++.++
T Consensus 384 ~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 LDRSIRWFREAGG 396 (397)
T ss_dssp TTTEEEEEEEEC-
T ss_pred CCCcEEEEEcCCC
Confidence 9999999998765
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-33 Score=322.67 Aligned_cols=323 Identities=18% Similarity=0.260 Sum_probs=274.2
Q ss_pred EeecCCCcE-EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 339 VSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 339 ~~~~h~~~V-~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
...+|.+.| .| ++++|+ ++++|+.||.|++||+.+++.+. .+.+|...|.+++|+
T Consensus 113 ~l~~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEECSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--
T ss_pred EecccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--
Confidence 344688765 55 555677 56899999999999999988765 377899999999997
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999987765 678999999999996 44 699999999999999 889999999999999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
|.++++ ++.++++++.||.|++||+++.+....+..+...|.+++| ++.++++++. ++.|++||+.+++.
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNC 311 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCE
Confidence 999998 4578999999999999999999999899999999999999 8899999986 89999999999999
Q ss_pred EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-CCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
+..+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ +++|++++.||.|++
T Consensus 312 ~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 312 IHTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL 386 (445)
T ss_dssp EEEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred EEEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE
Confidence 999998876 6666665 56799999999999999999999988887532 44578888885 689999999999999
Q ss_pred EEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCC
Q 001319 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTD 735 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (1101)
||+.++. .+..+.. .....
T Consensus 387 wd~~~~~-~~~~~~~------------------------------------------------------------~~~~~ 405 (445)
T 2ovr_B 387 WDLKTGE-FIRNLVT------------------------------------------------------------LESGG 405 (445)
T ss_dssp EETTTCC-EEEEEEE------------------------------------------------------------CTTGG
T ss_pred EECCCCc-eeeeeec------------------------------------------------------------cccCC
Confidence 9998762 2221100 00023
Q ss_pred CcccEEEEEeecCcccEEEeecCCe----EEEEEecC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGV----QKLWKWHR 768 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~----v~~w~~~~ 768 (1101)
+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 6788999999999999999999997 99999764
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.2e-33 Score=323.82 Aligned_cols=316 Identities=19% Similarity=0.311 Sum_probs=272.7
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+.+|.+.|.. +++++++ ++++|+.||+|++|| .+++.+..+.+|.+.|.+++|+ +.++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57799987533 3555677 899999999999999 8999999999999999999985 35899999999999999
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
+.+++....+..|...|.++.++ +..+++++. ++.|++||+.+++.+..+.+|.. .+.++++ +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99999999999999999999995 667898885 89999999999999999998877 7888888 688999999
Q ss_pred CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
.||.|++||+.+++.+..+..+. ..|.+++| ++.++++++.|+.|++||+.++. ....+.
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~--------------- 316 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLT--------------- 316 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEEC---------------
T ss_pred CCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEc---------------
Confidence 99999999999999998887654 47888888 88999999999999999987651 110000
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC
Q 001319 765 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 843 (1101)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 843 (1101)
+|...+.++.+ ++.++++++ ||.|++||+.+++.+..+..
T Consensus 317 -------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 317 -------------------------------------GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp -------------------------------------CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred -------------------------------------CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 14455666665 466888887 89999999999999999886
Q ss_pred ---CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee-----ccCCCCeeEEEEcCCCCEEEEEeCCCc----
Q 001319 844 ---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-----KGHQKRITGLAFSTSLNILVSSGADAQ---- 911 (1101)
Q Consensus 844 ---~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~---- 911 (1101)
|...|++++|+ +.+|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|++.+|++++.||+
T Consensus 358 ~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp TTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred CCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccE
Confidence 78889999995 479999999999999999999988887 578899999999999999999999998
Q ss_pred EEEEECCC
Q 001319 912 LCVWSIDT 919 (1101)
Q Consensus 912 v~lwd~~~ 919 (1101)
|.+||+..
T Consensus 435 l~v~df~~ 442 (445)
T 2ovr_B 435 LLVLDFDV 442 (445)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99999976
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-34 Score=334.66 Aligned_cols=294 Identities=17% Similarity=0.231 Sum_probs=237.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~ 419 (1101)
.+|...|+|++|+|.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| |+.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCC
Confidence 458899999999996555789999999999999987764321 13678999999999998 789
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~ 499 (1101)
+|++|+.||+|++||++++.. ..+.....+...+.+++|+|+++ +|++|+.||.|++||.+++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 999999999999999987543 22222234455788999999999 899999999999999888889999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeee---eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++|+|..+ .++++++.|++|++||+++..... ....|...|++++|+|+|++|++++. |+.|++||+.+++.
T Consensus 256 v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC 330 (435)
T ss_dssp EEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS
T ss_pred eeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc
Confidence 99988542 588899999999999998766543 33457789999999999999999986 89999999999988
Q ss_pred EEEecccCCc-----ceEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCeeeEeeccCCCCCCCCee-EEe
Q 001319 577 KRTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFS 638 (1101)
Q Consensus 577 ~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 638 (1101)
...+..|... ......|+|++..+++++ .++.|++||..+++.+..+... +...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEEC
Confidence 8887665431 122356777777776654 3467999999999988876532 33467777 699
Q ss_pred cCCCEEEEEEcCCcEEEEEcccc
Q 001319 639 KEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
|+|++|++|+ |+.|+||++.++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999876
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-33 Score=319.34 Aligned_cols=316 Identities=15% Similarity=0.201 Sum_probs=255.1
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEE
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~ 645 (1101)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 355566777888888877 89999999999 999999999999999999988888777655666899999999 789999
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999998632 0000000
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
...+..
T Consensus 159 --------------------------------------------------------------------------~~~~~~ 164 (383)
T 3ei3_B 159 --------------------------------------------------------------------------TDSWDY 164 (383)
T ss_dssp --------------------------------------------------------------------------CCCSSC
T ss_pred --------------------------------------------------------------------------cCCCCC
Confidence 001567
Q ss_pred CEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEEeec----ce
Q 001319 806 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRV----DE 879 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~v~iwd~~~----~~ 879 (1101)
.|.+++|+|+++++++++ |+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++++.|+.|++||+.+ +.
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 242 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNS 242 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence 799999999999999998 899999999 6788889999999999999999 777 999999999999999998 66
Q ss_pred EEEeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC-CCCcceEEEcCCCCEEEEEeCC
Q 001319 880 VKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHET 957 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~d~ 957 (1101)
++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++.......+...... ...+. +.|+|
T Consensus 243 ~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p----------- 309 (383)
T 3ei3_B 243 YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHP----------- 309 (383)
T ss_dssp EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECS-----------
T ss_pred eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccC-----------
Confidence 66666 6999999999999 9999999999999999999998766544332211110 01111 23433
Q ss_pred eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccce
Q 001319 958 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYP 1037 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 1037 (1101)
...+..++|+|||++ +|+.||.|+|||+.+++.+..+.. |.+...+
T Consensus 310 ----------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~----------~~~~~~~ 355 (383)
T 3ei3_B 310 ----------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD----------PNAAGII 355 (383)
T ss_dssp ----------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB----------TTBCSCC
T ss_pred ----------------------CCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC----------CCCCceE
Confidence 345677889999998 999999999999999999888864 3333344
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1038 LVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1038 ~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
..++|+| ++.+|++|+ ||.|++||+.+
T Consensus 356 ~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 5679999 799999997 99999999975
No 64
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-33 Score=308.59 Aligned_cols=291 Identities=19% Similarity=0.299 Sum_probs=242.7
Q ss_pred ceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-----eeEEeecCCcCeEEEecccCCCccEEEEeccC
Q 001319 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-----KLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d 517 (1101)
..+|+||.+.|++++|+|++.. +|+||+.|++|+||| .+++ +...+.+|...|.+++|++ ++.+|++++.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~~~d 107 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSGSWD 107 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEEETT
T ss_pred EEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEEccc
Confidence 3478999999999999998533 899999999999999 4433 4677899999999999987 67899999999
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe-cccCCcceEEEEEeCC
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~ 596 (1101)
+.|++|+............+...+..+.+++++.++++++. ++.+++||.......... .+|.. .+..++|+++
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~ 182 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPN 182 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEECSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEccC
Confidence 99999999998888888888889999999999999999986 889999999876655443 44444 7888999876
Q ss_pred C--CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcc
Q 001319 597 Q--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFE 674 (1101)
Q Consensus 597 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 674 (1101)
+ ..+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.|+.|++||+.+.. .+..+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~------ 253 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTL------ 253 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEEE------
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-eeeee------
Confidence 5 567889999999999999999988887664 489999999999999999999999999986541 00000
Q ss_pred cccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEE
Q 001319 675 ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 754 (1101)
Q Consensus 675 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 754 (1101)
T Consensus 254 -------------------------------------------------------------------------------- 253 (340)
T 4aow_A 254 -------------------------------------------------------------------------------- 253 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCC
Q 001319 755 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT 834 (1101)
Q Consensus 755 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~ 834 (1101)
.+...+.+++|+|++.+++++.|+.|++||+.+
T Consensus 254 -----------------------------------------------~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 254 -----------------------------------------------DGGDIINALCFSPNRYWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp -----------------------------------------------ECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred -----------------------------------------------cCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence 033457788888888777777788888888887
Q ss_pred ceEEEEee---------CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 835 FKVMTTFM---------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 835 ~~~~~~~~---------~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
+..+..+. +|...|++++|+| ++++|++|+.||.|+|||+.+|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 77665543 5788999999999 99999999999999999999885
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-33 Score=306.80 Aligned_cols=287 Identities=17% Similarity=0.266 Sum_probs=249.0
Q ss_pred ceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
++...+ +|.+.|++++| |++++ +++|+.||.|++||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344444 59999999999 99984 6899999999999998776554 36678999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCC
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~ 494 (1101)
+|++++|++|+.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876554555578899999999999 456 799999999999999 778888999999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
..+.++++.+. ++.++++++.|+.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+.+
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999763 457999999999999999 3444555555 778899999999998 777765 89999999999
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcE
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i 653 (1101)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998877 89999999998 699999999999999999999988877644 799999999998 6679999999
Q ss_pred EEEEcccc
Q 001319 654 KILANAIG 661 (1101)
Q Consensus 654 ~iwd~~~~ 661 (1101)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-33 Score=319.94 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=246.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCc--eeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|.++|++++|+|+|+ ++|+|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 56889999999999998875 332 36789999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce---e-EEeecCCc
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK---L-FNFEGHEA 495 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~---~-~~~~~h~~ 495 (1101)
|++++.|+.|++||+.+++.... ..+.+|...|.+++|+|+++ +|++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 99999999999999998764332 23568999999999999999 899999999999999 55552 2 33367899
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecC------------------CCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.|.+++|++ ++.+|++++.|+.|++||+. .......+..+...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999988 56899999999999999954 5667777778888999999999999999998
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--Ceee---------------
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNIL--------------- 620 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (1101)
. ++.|++||+.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 89999999999999999998876 79999999999877776 999999999987 4310
Q ss_pred -----------------------EeeccCCCCCCCCeeEEe-cCC---CEEEEEEcCCcEEEEEccccccccc
Q 001319 621 -----------------------TSTDAEGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (1101)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~v~~s-~~g---~~l~~~~~d~~i~iwd~~~~~~~~~ 666 (1101)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++...++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 2455689999976 566 9999999999999999987754443
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.3e-34 Score=323.18 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=243.8
Q ss_pred cCCCcEEEEEEecC---CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-
Q 001319 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspd---g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd- 417 (1101)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999994 444556666778999999998766532 1 11112347789999999999
Q ss_pred ---CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCceeEEe--
Q 001319 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1101)
Q Consensus 418 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-- 490 (1101)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987766 6779999999999999 777 899999999999999 788888888
Q ss_pred -ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc----------------------------CCCCce
Q 001319 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (1101)
Q Consensus 491 -~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------------~~~~~v 541 (1101)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 68999999999987 56899999999999999998765443332 277889
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--------------EEEecccCCcceEEEEEeCC--CCEEEEEeC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 605 (1101)
.+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 779999875 89999999987643 777777776 7888999999 999999999
Q ss_pred CCcEEEEECCCCee----eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 606 DSQIKFWDMDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 606 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998764 3356665445689999999999999999999999999975
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-32 Score=321.10 Aligned_cols=346 Identities=16% Similarity=0.209 Sum_probs=270.4
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..+. ..|.+++|+|++ .+++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3556788888755666666 46799999999999999999999999887654 489999999988 999999999999
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
+||+.++ .....+ .
T Consensus 187 vwd~~~~-~~~~~~-----------------------------------------------------------------~ 200 (464)
T 3v7d_B 187 VWDIKKG-CCTHVF-----------------------------------------------------------------E 200 (464)
T ss_dssp EEETTTT-EEEEEE-----------------------------------------------------------------C
T ss_pred EEECCCC-cEEEEE-----------------------------------------------------------------C
Confidence 9999876 222222 2
Q ss_pred CCcccEEEEEee--cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEe
Q 001319 735 DTSSKVVRLLYT--NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812 (1101)
Q Consensus 735 ~~~~~i~~~~~s--~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 812 (1101)
+|...|.++.++ +++..+++++.||.+++|++.....................+........... +|...+.++
T Consensus 201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~-- 276 (464)
T 3v7d_B 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHMASVRTV-- 276 (464)
T ss_dssp CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC--CCSSCEEEE--
T ss_pred CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc--CccceEEEE--
Confidence 377888888888 57789999999999999998765432211111101111111111111122222 377777776
Q ss_pred cCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 813 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 813 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
++++.++++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|...|
T Consensus 277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 67889999998 89999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 971 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 971 (1101)
.+++|+ +++|++++.||+|++||+.+++..... . ....+..++|++++.++++++|+.|++||+.+++.+.
T Consensus 356 ~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 356 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--H-----HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--E-----CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--c-----CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe
Confidence 999997 579999999999999999986643222 1 1256788999999999999999999999999999887
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
..... |...|.+++|+ ++.++++++.||.+.+|-
T Consensus 427 ~~~~~--~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 427 ANILK--DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SCTTT--TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhcc--CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 64433 38999999997 444555666777665553
No 69
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=319.48 Aligned_cols=287 Identities=13% Similarity=0.213 Sum_probs=240.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEec---cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd- 417 (1101)
+|.+.|.+++|+|+|++++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 499999999999999888888887 99999999998875431 13368999999999999
Q ss_pred --CCEEEEEECCCeEEEEeecCCc-ccccceeeecccCcEEEEEE------ecCCCceEEEEecCCceEEEEE-cCCc-e
Q 001319 418 --GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVWE-LSGR-K 486 (1101)
Q Consensus 418 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~l~~h~~~V~~l~~------s~d~~~~~l~s~~~d~~v~iwd-~~~~-~ 486 (1101)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999987 444 67899999999955 67888 899999999999999 6665 6
Q ss_pred eEEeecCCc----CeEEEe----cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc---CCCEEEE
Q 001319 487 LFNFEGHEA----PVYSIC----PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---DGSRLFS 555 (1101)
Q Consensus 487 ~~~~~~h~~----~v~~v~----~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~ 555 (1101)
+..+..|.+ .+.+++ |++ ++.++++++.|+.|++||+++...... ..+...|.+++|+| ++.++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence 777776665 788888 544 678999999999999999998876444 45677899999999 9999999
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEec-----ccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC------------
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV------------ 617 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~------------ 617 (1101)
++. ++.|++||+.+++....+. +|.. .+.+++|+|+++ ++++++.||.|++||+..+
T Consensus 230 ~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 230 TSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp EES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred ECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 985 8999999998877665554 6766 899999999998 7999999999999998754
Q ss_pred -------eeeEeeccCCCCCCCCeeEEecCCCEEE-EEEcCCcEEEEEcccc
Q 001319 618 -------NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1101)
Q Consensus 618 -------~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~~ 661 (1101)
+.+..+..+ ...|.+++|+|++++|+ +++.|+.|++|++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344455544 44899999999999998 7999999999998764
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-33 Score=314.12 Aligned_cols=300 Identities=11% Similarity=0.114 Sum_probs=231.2
Q ss_pred CCCcEEEEEEecCCceEEEEEecc-------CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d-------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
-+.+|+|++|+|||+ +||+|+.| +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999998 67888653 35999999876543211111 01112477899999988764
Q ss_pred cCCCEEEEE-----------ECCCeEEEEeecCCcccccc------eeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 416 PDGNYVGVA-----------FTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 416 pdg~~las~-----------~~d~~i~vwd~~~~~~~~~~------~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
++.+++| +.|+.+++|++.++...... .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 5666665 35778999999876432211 1123455679999999999965566778999999
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee--eccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
||| .+++++..+. |.+.|.+++|+| ||+++++++.+ .+++|+..++.... ....+...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888876 778899999987 67899998855 56666666666554 33456678999999999999999
Q ss_pred eecCCCCCceEEEEeCCCCee----EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEee-ccCCCCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLP 630 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (1101)
++.+......+++|+...... ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987554455789999877653 345666666 7999999999999999999999999999999988875 444 45
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.|++++|+|||++|++++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999655
No 71
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=321.47 Aligned_cols=260 Identities=12% Similarity=0.076 Sum_probs=209.7
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|.+|+|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|||
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC-----
Confidence 46899999999998 679999999999 644332 256899999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCc-----CeE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PVY 498 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~-----~v~ 498 (1101)
.++.+.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||.|++||..+ ++..+. |.. .|.
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~ 133 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYH 133 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEE
Confidence 4555555554432211 12 5688999999999999 799999999999999444 667777 765 499
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCe-------eeec----cCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+++|+| ||++|++|+.||+|++||+.++.. ...+ .+|..+|.+++|+||| +++++. |+.|+
T Consensus 134 svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVr 205 (588)
T 2j04_A 134 CFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVF 205 (588)
T ss_dssp EEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEE
T ss_pred EEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEE
Confidence 999988 779999999999999999988752 3443 5667799999999999 666664 89999
Q ss_pred EEeCCCCee---EEEec-ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE--ecCC
Q 001319 568 EWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKEG 641 (1101)
Q Consensus 568 iwd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~g 641 (1101)
+||+.++.. .+++. +|. ..|..++|+ ++.+++++ +++|++||+.+++....... +...|..++| +|++
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKES 279 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSC
T ss_pred EEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCC
Confidence 999988774 35664 554 489999999 68888887 69999999998887444433 4558999999 9999
Q ss_pred CEEEEEEcCCcEEEEEcc
Q 001319 642 NLLAVTTADNGFKILANA 659 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~ 659 (1101)
..+++++.+|+ ++|...
T Consensus 280 ~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEEECSSCEE-EEEESS
T ss_pred CEEEEEcCCCC-EEEeec
Confidence 99999999999 999864
No 72
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=322.64 Aligned_cols=350 Identities=15% Similarity=0.188 Sum_probs=248.7
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeecc-----------CCCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-----------EGGLP 630 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 630 (1101)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44577888888888888888877 899999999 999999999999999999998766544431 12455
Q ss_pred CCCeeEEec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 631 NLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 631 ~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.|.+++|+| ++.+|++++.|+.|++||+.++. ....
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~------------------------------------------ 137 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADV------------------------------------------ 137 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-EEEE------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-ccee------------------------------------------
Confidence 899999999 77899999999999999987541 0000
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccC
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 789 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1101)
+
T Consensus 138 ------------------------------------------------------~------------------------- 138 (408)
T 4a11_B 138 ------------------------------------------------------F------------------------- 138 (408)
T ss_dssp ------------------------------------------------------E-------------------------
T ss_pred ------------------------------------------------------c-------------------------
Confidence 0
Q ss_pred CccceeeccCCCCCCCCEeEEEecC---CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEE
Q 001319 790 SGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIG 864 (1101)
Q Consensus 790 ~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g 864 (1101)
.+...+.++++++ ++.++++++ +|.|++||+.+++.+..+..|...|++++|+| ++. +|++|
T Consensus 139 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~ 205 (408)
T 4a11_B 139 ------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATA 205 (408)
T ss_dssp ------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEE
T ss_pred ------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEE
Confidence 0334456666666 445888887 89999999999999999999999999999999 666 69999
Q ss_pred eCCCcEEEEEeecce-EEEee---------------ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 865 TEDSTIHIYNVRVDE-VKSKL---------------KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.......
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 285 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG 285 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc
Confidence 999999999998764 33333 57899999999999999999999999999999999876543322
Q ss_pred eecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 929 HIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
...................+.+++++.++.|++||+.+++.+..+..| ...|++++|+|++++|++|+.||.|++||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 286 KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 222222212333344455666666788999999999999999988765 89999999999999999999999999999
Q ss_pred CCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1009 ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
+.+++.+..... .. ....+.+.....+.+++.|+.+++|+...
T Consensus 363 ~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 363 PSLYEPVPDDDE-----------TT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ECC-------------------------------------------------------
T ss_pred CCCCCccCCCCc-----------eE----eccccccccceeecccCccCceeecCCcc
Confidence 999987655432 11 12234444566777888999999998764
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-32 Score=306.82 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=248.5
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
..+.+|...|++++|+|||++||+|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3588999999999999999999999999999999999988766 6889999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC-----CeEEEEecCCCCe-----------eeeccCCCC--c
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGS-----------RVDYDAPGH--W 540 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~-----------~~~~~~~~~--~ 540 (1101)
|| .+++.+..+. |...|.+++|++ ++.++++++.+ +.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 99 8888888887 888999999987 66899999998 9999999876542 223333444 8
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++.
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 999999999999999885 89999999999 788888888876 899999999999999999999999999999999
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCC--------------cEEEEEccccccccccccCCCcccccCcceeeee
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--------------GFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1101)
+..+.. ...+..++|+|+++++++++.++ .+++||..++ ...
T Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~-------------------- 308 (369)
T 3zwl_B 253 LKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEI-------------------- 308 (369)
T ss_dssp EEEEEC---SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEE--------------------
T ss_pred eeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cch--------------------
Confidence 888873 33689999999999999999988 4555555443 111
Q ss_pred eeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 686 KVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 686 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..+ .+|...|.+++|+|+++.+++++.||.|++|+
T Consensus 309 ----------------------------------------~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 309 ----------------------------------------GRV-----QGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp ----------------------------------------EEE-----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ----------------------------------------hhe-----ecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 111 23788999999999999999999999999999
Q ss_pred ecCC
Q 001319 766 WHRN 769 (1101)
Q Consensus 766 ~~~~ 769 (1101)
+...
T Consensus 344 ~~~~ 347 (369)
T 3zwl_B 344 FEKS 347 (369)
T ss_dssp ECHH
T ss_pred Cccc
Confidence 8653
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-34 Score=325.47 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=224.6
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCC--ceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 567999999999998 5689999999999999877 3332 47889999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEeec-CCc
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~~-h~~ 495 (1101)
||+|+.|++|++||+.+++.......+.+|...|++++|+|+++ +|++++.|+.|++|| .+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999999873333446778999999999999999 799999999999999 5555 4677887 999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCC------------------CCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.|.+++|++ ++.+|++++.|+.|++||+.. ......+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 668999999999999999853 3334445 7788899999999999999998
Q ss_pred cCCCCCceEEEEeCCCCee----EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee--------------
Q 001319 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-------------- 619 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------- 619 (1101)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+......
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 89999999999887 778888876 79999999999998888766665 666542110
Q ss_pred -------------------------eEeecc-----------CCCCCCCCeeEEecC-CC---EEEEEEcCCcEEEEEc
Q 001319 620 -------------------------LTSTDA-----------EGGLPNLPRLRFSKE-GN---LLAVTTADNGFKILAN 658 (1101)
Q Consensus 620 -------------------------~~~~~~-----------~~~~~~v~~v~~s~~-g~---~l~~~~~d~~i~iwd~ 658 (1101)
...... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000000 014557888887654 33 6999999999999985
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=313.88 Aligned_cols=369 Identities=13% Similarity=0.128 Sum_probs=252.8
Q ss_pred eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCCcccc
Q 001319 364 SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR 442 (1101)
Q Consensus 364 ~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~ 442 (1101)
..++.+++|+++.++... ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++...
T Consensus 20 ~~~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 80 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS 80 (408)
T ss_dssp HHHHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS
T ss_pred eccCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 356678888887765443 4778999999999999 99999999999999999999987665
Q ss_pred cceee----------ecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC-Ccc
Q 001319 443 QHSQI----------DAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE-NIQ 509 (1101)
Q Consensus 443 ~~~~l----------~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~-~~~ 509 (1101)
..... .+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+. +...+.++++.+.. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (408)
T 4a11_B 81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHC 157 (408)
T ss_dssp CEEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCC
T ss_pred eEeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCc
Confidence 32211 25999999999999 555 799999999999999 7777776666 77889999988753 456
Q ss_pred EEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCE-EEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcc
Q 001319 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKS 587 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~ 587 (1101)
++++++.|+.|++||++++.....+..+...|.+++|+|++++ +++++. ++.|++||++++. ....+..+...
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~- 232 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA----DSRVKLWDVRRASGCLITLDQHNGK- 232 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTCSSCCSEECCTTTTC-
T ss_pred EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC----CCcEEEEECCCCCcccccccccccc-
Confidence 9999999999999999999988889999999999999999995 777775 8899999998764 33333322210
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccccc
Q 001319 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1101)
Q Consensus 588 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 667 (1101)
......... ..+...|.+++|+|++++|++++.|+.|++||+.++... ..
T Consensus 233 ---------------------------~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~ 282 (408)
T 4a11_B 233 ---------------------------KSQAVESAN--TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT-LV 282 (408)
T ss_dssp ---------------------------SCCCTTTSS--CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC-CC
T ss_pred ---------------------------cceeecccc--ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc-ee
Confidence 000011111 233457999999999999999999999999999876221 11
Q ss_pred ccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeec
Q 001319 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 747 (1101)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 747 (1101)
.......
T Consensus 283 ~~~~~~~------------------------------------------------------------------------- 289 (408)
T 4a11_B 283 NYGKVCN------------------------------------------------------------------------- 289 (408)
T ss_dssp CCCCCCC-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 1000000
Q ss_pred CcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeE
Q 001319 748 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 827 (1101)
Q Consensus 748 ~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i 827 (1101)
. ..............+.+++++.++.|
T Consensus 290 -------~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 290 -------N----------------------------------------------SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp -------C----------------------------------------------CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred -------c----------------------------------------------ccccceeEEecCCCceEEEEecCCEE
Confidence 0 00111112222334555566669999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcC-CCCEEEEE
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSS 906 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~-d~~~l~s~ 906 (1101)
++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +...+.+.
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSS 392 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeeccc
Confidence 9999999999999999999999999999 8999999999999999999999877655443322 22333 33455677
Q ss_pred eCCCcEEEEECCC
Q 001319 907 GADAQLCVWSIDT 919 (1101)
Q Consensus 907 s~Dg~v~lwd~~~ 919 (1101)
+.|+.+++|+...
T Consensus 393 ~~~~~~~~W~~~~ 405 (408)
T 4a11_B 393 DEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------
T ss_pred CccCceeecCCcc
Confidence 8899999998754
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-33 Score=317.78 Aligned_cols=315 Identities=16% Similarity=0.269 Sum_probs=239.4
Q ss_pred eecccCcEEEEEEecC---CCceEEEEecCCceEEEEE-cCCceeEEeec-----CCcCeEEEecccCCC--ccEEEEec
Q 001319 447 IDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-----HEAPVYSICPHHKEN--IQFIFSTA 515 (1101)
Q Consensus 447 l~~h~~~V~~l~~s~d---~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~-----h~~~v~~v~~~~~~~--~~~l~s~~ 515 (1101)
..+|.+.|++++|+|+ +.. .+++++.++.|++|| .+++.+..+.. |...|.+++|+++.+ +.+|++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~-~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDP-LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSC-EEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCc-eEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 4589999999999985 444 455555577999999 76777766654 557899999998643 67999999
Q ss_pred cCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCCCeeEEEe---cccCCcceEEE
Q 001319 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY---AGFRKKSNGVV 591 (1101)
Q Consensus 516 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~---~~~~~~~v~~~ 591 (1101)
.||.|++||+.+.+....+..+...|.+++|+| ++.++++++. ++.|++||+.+++.+..+ .+|.. .+.++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK----DHALRLWNIQTDTLVAIFGGVEGHRD-EVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTTTEEEEEECSTTSCSS-CEEEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC----CCeEEEEEeecCeEEEEecccccccC-ceeEE
Confidence 999999999999999988989999999999999 9999999986 899999999999999988 56655 79999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCC
Q 001319 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1101)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 671 (1101)
+|+|++++|++++.||.|++||+.+++....+.. .+.++|++..+...........+ .
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---------~----- 225 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE--------SYDYNPNKTNRPFISQKIHFPDF---------S----- 225 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH--------HHTCCGGGCSSCCCCEEECCCSE---------E-----
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccce--------eEEecCCCCcccccceeeccCcc---------c-----
Confidence 9999999999999999999999988766544432 23334433222111000000000 0
Q ss_pred CcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCccc
Q 001319 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 751 (1101)
Q Consensus 672 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 751 (1101)
. ...
T Consensus 226 ---------------------------------------------------------~---~~~---------------- 229 (366)
T 3k26_A 226 ---------------------------------------------------------T---RDI---------------- 229 (366)
T ss_dssp ---------------------------------------------------------E---CSS----------------
T ss_pred ---------------------------------------------------------c---ccC----------------
Confidence 0 011
Q ss_pred EEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEE
Q 001319 752 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 830 (1101)
Q Consensus 752 l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw 830 (1101)
|...|.+++|+ ++++++++ ||.|++|
T Consensus 230 ---------------------------------------------------~~~~v~~~~~~--~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 230 ---------------------------------------------------HRNYVDCVRWL--GDLILSKSCENAIVCW 256 (366)
T ss_dssp ---------------------------------------------------CSSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred ---------------------------------------------------CcceEEEEEEc--CCEEEEEecCCEEEEE
Confidence 44445555554 34444444 4555555
Q ss_pred ECCCc--------------eEEEEeeCCCCCeeEEEEecCC--CCEEEEEeCCCcEEEEEeecce----EEEeeccC--C
Q 001319 831 NMMTF--------------KVMTTFMSPPPASTFLAFHPQD--NNIIAIGTEDSTIHIYNVRVDE----VKSKLKGH--Q 888 (1101)
Q Consensus 831 d~~~~--------------~~~~~~~~~~~~i~~l~~s~~~--~~~la~g~~dg~v~iwd~~~~~----~~~~~~~h--~ 888 (1101)
|+.++ ..+..+..|...|++++|+| + +++|++|+.||.|++||+.+++ ....+.+| .
T Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 335 (366)
T 3k26_A 257 KPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG 335 (366)
T ss_dssp EESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCC
T ss_pred eCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccC
Confidence 55443 34677888999999999999 7 9999999999999999999875 44577777 7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
..|++++|+|++++|++++.||.|++||+.+
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999999999999999999999863
No 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-33 Score=322.81 Aligned_cols=301 Identities=15% Similarity=0.198 Sum_probs=232.3
Q ss_pred EEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEEEEEcCCcEEE
Q 001319 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~i 655 (1101)
....+|.. .|++++|+| +++.|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34445554 799999999 46789999999999999999887766666666677999999998 7899999999999999
Q ss_pred EEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCC
Q 001319 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTD 735 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (1101)
||+.+.. ...+
T Consensus 192 wd~~~~~--~~~~------------------------------------------------------------------- 202 (435)
T 4e54_B 192 QDFKGNI--LRVF------------------------------------------------------------------- 202 (435)
T ss_dssp EETTSCE--EEEE-------------------------------------------------------------------
T ss_pred eeccCCc--eeEE-------------------------------------------------------------------
Confidence 9986431 0000
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
.... .+...+.+++|+|+
T Consensus 203 ------------------~~~~--------------------------------------------~~~~~~~~~~~~~~ 220 (435)
T 4e54_B 203 ------------------ASSD--------------------------------------------TINIWFCSLDVSAS 220 (435)
T ss_dssp ------------------ECCS--------------------------------------------SCSCCCCCEEEETT
T ss_pred ------------------eccC--------------------------------------------CCCccEEEEEECCC
Confidence 0000 13445678899999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE---eeccCCCCe
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS---KLKGHQKRI 891 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~---~~~~h~~~V 891 (1101)
+++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|.+..+|++|+.|+.|+|||+.+.+... ...+|...|
T Consensus 221 ~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v 299 (435)
T 4e54_B 221 SRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299 (435)
T ss_dssp TTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCE
T ss_pred CCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccc
Confidence 99999998 8999999986 456677889999999999999555689999999999999998765443 336799999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-------------CCe
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------------ETQ 958 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-------------d~~ 958 (1101)
++++|+|+|++|++++.||+|++||+.+++.......+..............|+|++..++++. ++.
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 9999999999999999999999999999876544322221111112344566777777766642 357
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEE-EEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCA-VYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v-~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
|++||..+++.+..+..++ ...|.++ +|+|||++|++|+ |+.|+|||+++++.
T Consensus 380 i~iwd~~~g~~~~~l~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECSSSCCEEEEECCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCcEEEEEeCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 9999999999988876543 7778887 6999999999886 88999999998865
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-33 Score=320.50 Aligned_cols=298 Identities=13% Similarity=0.191 Sum_probs=241.8
Q ss_pred CCcceeEee--cCCCcEEEEEEec-CCceEEEEEeccCcEEEEecCC---CceeccccceeecccccCccccccccccCC
Q 001319 333 LPRTVAVSL--HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 333 ~~~~~~~~~--~h~~~V~~v~fsp-dg~~llasg~~d~~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
....+...+ +|.+.|++++|+| +|+ +||+|+.||.|+|||+.+ +.... .....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc-----------------eeeeccCC
Confidence 334555555 4889999999999 998 569999999999999977 33111 01122599
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeec---CCcccccce-----ee--ec--ccCcEEEEE--EecCCCceEEEEec
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-----QI--DA--HVGAVNDLA--FAYPNKLLCVVTCG 472 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~~-----~l--~~--h~~~V~~l~--~s~d~~~~~l~s~~ 472 (1101)
..|.+++|+|++++|++|+.||.|++||+. +++...... .+ .. +...+.++. +++++. ++++|+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 189 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALT 189 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEe
Confidence 999999999999999999999999999995 554433110 11 11 556677777 456777 899999
Q ss_pred CCceEEEEE-cCCceeEEeec--CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEc-
Q 001319 473 DDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYS- 547 (1101)
Q Consensus 473 ~d~~v~iwd-~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s- 547 (1101)
.|+.|++|| .+++++..+.+ |.+.|.+++|++ ++.+|++++.||.|++||+++......+. .+...|.+++++
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 999999999 88999999998 899999999987 56899999999999999999988877765 566689999655
Q ss_pred ---cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-------------------------CcceEEEEEeCCCCE
Q 001319 548 ---ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNH 599 (1101)
Q Consensus 548 ---~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~ 599 (1101)
+++.++++++. ++.|++||+.+++.+..+.++. ...+.+++|+ ++++
T Consensus 268 ~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 268 FYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp TTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred ccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 56889999875 8999999999999998888652 2347788999 7789
Q ss_pred EEEEeCCCcEEEEECCCCeeeEeeccCC-----------------------------------CCCCCCeeEEecC--CC
Q 001319 600 FLAVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GN 642 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~v~~s~~--g~ 642 (1101)
|++++.||.|++||+.+++....+..+. +...|.+++|+++ +.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~ 422 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP 422 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence 9999999999999999988777665421 4568999999998 78
Q ss_pred EEEEEEcCCcEEEEE
Q 001319 643 LLAVTTADNGFKILA 657 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd 657 (1101)
+|++|+.||.|++|+
T Consensus 423 ~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEcCCceEEEeC
Confidence 999999999999994
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-32 Score=311.87 Aligned_cols=292 Identities=14% Similarity=0.221 Sum_probs=244.0
Q ss_pred eEeecCCCc--EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 338 AVSLHQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 338 ~~~~~h~~~--V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
....+|.+. +.+++|++ ..+ ++++.|+.|+|||+.+++.... ....|...|.+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EECTTCCCCTTCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeCCCCcCCceEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 333355555 44566665 445 5677999999999999876542 123388999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeEEeecC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGH 493 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~~~~h 493 (1101)
|+|++||+|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ ++++|+.|+.|++|| . .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999988666 677999999999994 45 799999999999999 4 57778899999
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
.+.|.+++|++ ++.+|++++.|+.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAAT 293 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTT
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCC
Confidence 99999999988 6689999999999999999999998888889999999999998765554331 11388999999999
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
++.+..+..+ ..+..++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|+|++|++++.||
T Consensus 294 ~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 294 GARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9999888643 3699999999999999954 89999999999977766654445556899999999999999999999
Q ss_pred cEEEEEccccc
Q 001319 652 GFKILANAIGL 662 (1101)
Q Consensus 652 ~i~iwd~~~~~ 662 (1101)
.|++|++.++.
T Consensus 372 ~i~iw~~~~~~ 382 (401)
T 4aez_A 372 NLKFWRVYDGD 382 (401)
T ss_dssp EEEEEECCC--
T ss_pred cEEEEECCCCc
Confidence 99999998873
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.3e-32 Score=333.76 Aligned_cols=307 Identities=19% Similarity=0.253 Sum_probs=246.1
Q ss_pred ccccCCccEEEEEEccCC-CEEEEEECCCeEEEEeecCCccc--ccceeeecccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.++... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 478999999999999974 79999999999999999875432 12236789999999999999999 89999999999
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee---ccCCCCceEEEEEccCC--C
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADG--S 551 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~d~--~ 551 (1101)
++|| .+++++..+.+|...|.+++|++ ++.+|++++.|++|++||......... ...|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 88999999999999999999987 568999999999999999765433322 23566789999999987 5
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
.+++++. |+.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888885 89999999999999999999987 8999999999999999999999999999999988777643 36
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
|.+++|+|++.++++++ ++.|++||+.++ ..+..+..+..... ...+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~--------~~~~~---------------------- 652 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKVDLKAEA--------EKADN---------------------- 652 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECCCCC--------------------------------------
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcccccccc--------ccccc----------------------
Confidence 89999999998888766 566999999877 33333221110000 00000
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
.+. .....+...+++++|+|+|++|++++.||.|++|++.
T Consensus 653 ----------~~~------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 653 ----------SGP------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------ccc------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 000 0001133457899999999999999999999999864
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-32 Score=297.26 Aligned_cols=251 Identities=19% Similarity=0.290 Sum_probs=211.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|.+++|+|||++||+|+.|++|+|||+.++.. .....+.+|.+.|++++|+++ ++ +|+||+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 4778999999999999999999999999999999975421 122378899999999999864 77 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe--eeeccCCCCceEEEEEccC----
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD---- 549 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d---- 549 (1101)
+|| .+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 6553 567788999999999999865578999999999999999987642 3556778889999999997
Q ss_pred ---------CCEEEEeecCCCCCceEEEEeCCCCe----eEEEecccCCcceEEEEEeCCC---CEEEEEeCCCcEEEEE
Q 001319 550 ---------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 550 ---------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd 613 (1101)
+++|++++. |+.|++||+.+++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 578999986 8999999998765 6677888877 89999999984 7899999999999999
Q ss_pred CCCCe---eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.+.. ....+....+...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 97643 12223223345578999999999999999999999999975
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.7e-32 Score=310.19 Aligned_cols=281 Identities=15% Similarity=0.250 Sum_probs=240.4
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
-...|+||+++ +||+| .|++|+|||..+|+.... ..+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvg-ld~tV~lWd~~tg~~~~~-----------------~~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-----------------EEecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 66877 599999999999987642 12567889999999999999999999
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEecc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
.||+|+|||+.+++.++ .+.+|...|.+++|+ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998776 688999999998885 55 799999999999999 4456678899999999999997
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccCCCEE-EEeecCCCCCceEEEEeCCCCeeEE
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+ ++.++++++.|+.+++|+..+++. ......+...|.+++|+|++..+ ++++. ..|+.|++||+.++++..
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 7 668999999999999999987653 34556777889999999976654 44432 248899999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEE
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 656 (1101)
.+..+. .+..+.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|+|++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 988765 578899999999998865 79999999999999999988664 489999999999999999999999999
Q ss_pred Ecccc
Q 001319 657 ANAIG 661 (1101)
Q Consensus 657 d~~~~ 661 (1101)
|+...
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98754
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.6e-32 Score=311.54 Aligned_cols=313 Identities=8% Similarity=0.064 Sum_probs=250.1
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcc---cccceeeecccCcEEEEEEecC----C---CceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVV 469 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d----~---~~~~l~ 469 (1101)
.++.+|.+.|++++|+| ++||+|+.||.|++||+.+++. ......+.+|...|++++|+|+ + + +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 35789999999999999 8999999999999999998871 1122367799999999999999 8 8 899
Q ss_pred EecCCceEEEEE-cCCce-----eEEeecC-----CcCeEEEecccC--CCccE-EEEeccCCeEEEEecCC------CC
Q 001319 470 TCGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MG 529 (1101)
Q Consensus 470 s~~~d~~v~iwd-~~~~~-----~~~~~~h-----~~~v~~v~~~~~--~~~~~-l~s~~~d~~i~~wd~~~------~~ 529 (1101)
+++.|+.|++|| .+++. +..+.+| ...|.+++|++. +++.+ |++++.||.|++||+.+ ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999 77776 8888888 589999999822 36688 99999999999999988 55
Q ss_pred eee-----ec-------cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc---c---CCcceEEE
Q 001319 530 SRV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVV 591 (1101)
Q Consensus 530 ~~~-----~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~~v~~~ 591 (1101)
... .+ ..+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.. | .. .+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 544 44 4467789999999999 8888875 89999999999999999988 6 55 89999
Q ss_pred EEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeeccCC-----------CCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 592 QFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 592 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
+|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.|+.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999999888887611 344799999999999999999999999999
Q ss_pred ccccccccccccCCCcc-cccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCC
Q 001319 658 NAIGLRSLRAVENPPFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDT 736 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (1101)
+.++ ..+..+...... ..... ...+.. .....|
T Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~------~~~g~~---------------------------------------~~~~~~ 353 (397)
T 1sq9_A 320 VKTK-ERITTLNMHCDDIEIEED------ILAVDE---------------------------------------HGDSLA 353 (397)
T ss_dssp TTTT-EEEEEEECCGGGCSSGGG------CCCBCT---------------------------------------TSCBCS
T ss_pred cCCC-ceeEEEecccCcccchhh------hhcccc---------------------------------------cccccc
Confidence 9876 333333210000 00000 000000 000225
Q ss_pred cccEEEEEeecCc----------ccEEEeecCCeEEEEEecC
Q 001319 737 SSKVVRLLYTNSA----------VGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 737 ~~~i~~~~~s~~~----------~~l~~~~~dg~v~~w~~~~ 768 (1101)
...|.+++|+|++ ..+++++.||.|++|++..
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8899999999998 7899999999999999764
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.6e-32 Score=294.57 Aligned_cols=250 Identities=14% Similarity=0.200 Sum_probs=206.8
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--C
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d 417 (1101)
..+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++.... ...+.+|.+.|.+++|+| +
T Consensus 5 ~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~-----------------~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCC-----------------CEEECCCSSCEEEEEECCGGG
T ss_pred ccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEE-----------------EEEEccccCCeEEEEecCCCc
Confidence 346999999999999999 56999999999999997542110 124789999999999987 4
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCc--eeEEeec
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEG 492 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~--~~~~~~~ 492 (1101)
|++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++. ....+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 899999999999999999987522 22357789999999999998 77 899999999999999 5442 2467789
Q ss_pred CCcCeEEEecccCC-----------CccEEEEeccCCeEEEEecCCCC----eeeeccCCCCceEEEEEccCC---CEEE
Q 001319 493 HEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRLF 554 (1101)
Q Consensus 493 h~~~v~~v~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~d~---~~l~ 554 (1101)
|...|.+++|+|.. ++.+|++++.|++|++||+++.. ....+..|...|.+++|+|++ .+|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 99999999998852 25799999999999999998766 445678899999999999995 7899
Q ss_pred EeecCCCCCceEEEEeCCCCe--e-EEEe--cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 555 SCGTSKDGDSFLVEWNESEGT--I-KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~--~-~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+++. |+.|++||+.++. . ...+ ..+.. .+..++|+|++++|++++.||.|++|+..
T Consensus 224 s~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9886 8999999987643 1 2233 34443 78999999999999999999999999976
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.2e-31 Score=303.02 Aligned_cols=244 Identities=15% Similarity=0.135 Sum_probs=215.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc--ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+..|..+|.+++|+|||++||+|+.|+.|++||+.+++ .+. .+.+|...|++++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCC--EEEEEcCCCeEEE
Confidence 44589999999999999999999999999999999876 444 6789999999999999999 8999999999999
Q ss_pred EE-cCCceeE--EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccCCCE
Q 001319 480 WE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 480 wd-~~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~ 552 (1101)
|| .+++... .+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6666443 4467999999999987 568999999999999999988763 2333566789999999999999
Q ss_pred EEEeecCCCCCceEEEEeC------------------CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 553 LFSCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
+++++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+
T Consensus 157 l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999985 889999995 46788888888776 8999999999999999999999999999
Q ss_pred CCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999988887664 379999999999988887 899999999987
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-34 Score=316.81 Aligned_cols=315 Identities=10% Similarity=0.022 Sum_probs=248.0
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
-..+|.+++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.++
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457999999999999999999999999 766654 346999999999999998 377777777555
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC-----ceEEEEEccCCCEEEEeecC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~~ 559 (1101)
..+..+ +|...|.+++|+| +|.+|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++.
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~- 149 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE- 149 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-
Confidence 444444 4588999999988 678999999999999999544 444444 443 4999999999999999986
Q ss_pred CCCCceEEEEeCCCCee-------EEEe----cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee---Eeecc
Q 001319 560 KDGDSFLVEWNESEGTI-------KRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL---TSTDA 625 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~ 625 (1101)
|++|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++... .++..
T Consensus 150 ---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 150 ---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp ---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred ---CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 99999999998853 5666 55554 89999999998 889999999999999887742 34421
Q ss_pred CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
.+...|.+++|+ |+.|++++ ++.|++||+.++......
T Consensus 224 -~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-------------------------------------- 261 (588)
T 2j04_A 224 -ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-------------------------------------- 261 (588)
T ss_dssp -CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE--------------------------------------
T ss_pred -cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE--------------------------------------
Confidence 233479999999 68999887 699999998866221110
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEe--ecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLY--TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 783 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~ 783 (1101)
.+|...|..++| +|++..++++..+|+ ++|..+
T Consensus 262 ----------------------------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 262 ----------------------------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp ----------------------------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred ----------------------------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 237788889999 999999999999999 999742
Q ss_pred cccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 784 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+
T Consensus 297 -------------------------~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~ 347 (588)
T 2j04_A 297 -------------------------ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAI 347 (588)
T ss_dssp -------------------------SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEE
T ss_pred -------------------------cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEE
Confidence 25588888887775 7888888875443 333333 55688899999 8888887
Q ss_pred Ee
Q 001319 864 GT 865 (1101)
Q Consensus 864 g~ 865 (1101)
++
T Consensus 348 ~~ 349 (588)
T 2j04_A 348 VY 349 (588)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-33 Score=315.94 Aligned_cols=242 Identities=14% Similarity=0.106 Sum_probs=200.8
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC--cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~--~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+..+.+.|.+++|+|||++||+|+.|+.|++||+.++ +.+. .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3446779999999999999999999999999999987 4444 6789999999999999998 7999999999999
Q ss_pred EE-cCCc---eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe---eeeccC-CCCceEEEEEccCCC
Q 001319 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (1101)
Q Consensus 480 wd-~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~d~~ 551 (1101)
|| .+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+. ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6665 6778889999999999988 668999999999999999998763 555666 888999999999999
Q ss_pred EEEEeecCCCCCceEEEEeCC------------------CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001319 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1101)
++++++. ++.|++||+. .++++..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999986 8899999985 35566666 6655 899999999999999999999999999
Q ss_pred CCCCee----eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999877 56666554 479999999999999988766665 66654
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=317.09 Aligned_cols=298 Identities=14% Similarity=0.222 Sum_probs=231.8
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC------------cc
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------IS 408 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~ 408 (1101)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++......... ......+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~--------~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGE--------YNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCC--------EEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccc--------eeEecccccccccccccccccccCc
Confidence 45778999999999998 56899999999999998876311000000 00112467887 88
Q ss_pred EEEEEEccCC--CEEEEEECCCeEEEEeecCCccccc------------------------------------c-eeeec
Q 001319 409 VSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQ------------------------------------H-SQIDA 449 (1101)
Q Consensus 409 v~~~~~spdg--~~las~~~d~~i~vwd~~~~~~~~~------------------------------------~-~~l~~ 449 (1101)
|.+++|+|++ .+|++++.|++|++||+.+++.... . ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 8999999999999999987443100 0 11358
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeE-------EeecCCcCeEEEecccCCCc-cEEEEeccCCe
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENI-QFIFSTAIDGK 519 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~-------~~~~h~~~v~~v~~~~~~~~-~~l~s~~~d~~ 519 (1101)
|...|++++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|+| ++ .+|++++.||.
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSC
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCe
Confidence 999999999999999 78888 799999999 4 344444 3668999999999987 44 79999999999
Q ss_pred EEEEecCCCCe----eeeccCCCC------------ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecc
Q 001319 520 IKAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAG 582 (1101)
Q Consensus 520 i~~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~ 582 (1101)
|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998876 566666665 899999999999999886 48999999997 888888888
Q ss_pred cCCcc--------------eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC----------------------
Q 001319 583 FRKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE---------------------- 626 (1101)
Q Consensus 583 ~~~~~--------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 626 (1101)
|.... +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 75311 223899999999999999999999999998775422110
Q ss_pred --------CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 627 --------GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 627 --------~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.....|..++|+|++++|++++.++ +++|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123678899999999999998775 777764
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.1e-31 Score=290.55 Aligned_cols=281 Identities=15% Similarity=0.258 Sum_probs=235.0
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~ 426 (1101)
..+|+||+++ +||+| .|++|+|||+.+++.+.. ..+.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~-----------------~~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-----------------EEecCCCCeEEEEEECCCCCEEEEEEC
Confidence 4679999987 56776 599999999999987642 125678899999999999999999999
Q ss_pred CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEeccc
Q 001319 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHH 504 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~ 504 (1101)
||+|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999998776 67899998887665 455 799999999999999 44466788899999999999977
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCee----eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
++.++++++.|++|++||+.+++.. .....+...|.+++++|++..++.... ...++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 5689999999999999999876543 344556778999999998776543221 234789999999998877766
Q ss_pred cccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.... .+..+.|+++++.+++++ .|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++++.|++|++||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 588899999999988765 79999999999999999988664 48999999999999999999999999998
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-31 Score=290.29 Aligned_cols=290 Identities=15% Similarity=0.190 Sum_probs=247.3
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
+.+..+.+|.+.|.+++| + ++.+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. ++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg 81 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----DT 81 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----TS
T ss_pred HHHHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----CC
Confidence 567889999999999999 5 5579999999999999999988888888888999999999999999999986 88
Q ss_pred eEEEEeCCCC---eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-C
Q 001319 565 FLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-E 640 (1101)
Q Consensus 565 ~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 640 (1101)
.|++|++... +....+.+|.. .+.+++| +++++++++.||.|++|| .++....+..+. ..+.++.|+| +
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~~~~~~~~~ 154 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVWDAKVVSFS 154 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEEEEEEEETT
T ss_pred eEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC--CceeEEEEccCC
Confidence 9999998654 66777888776 7888888 578999999999999999 666777776554 4789999998 9
Q ss_pred CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
+.++++++.|+.|++||.... ...+
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~~---~~~~---------------------------------------------------- 179 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDKV---IKTF---------------------------------------------------- 179 (313)
T ss_dssp TTEEEEEETTSCEEEEETTEE---EEEE----------------------------------------------------
T ss_pred CCEEEEEECCCCEEEEecCce---EEEE----------------------------------------------------
Confidence 999999999999999983211 0000
Q ss_pred eCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCC
Q 001319 721 DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1101)
.
T Consensus 180 --------------------------------------------~----------------------------------- 180 (313)
T 3odt_A 180 --------------------------------------------S----------------------------------- 180 (313)
T ss_dssp --------------------------------------------C-----------------------------------
T ss_pred --------------------------------------------e-----------------------------------
Confidence 0
Q ss_pred CCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 801 VNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 801 ~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
..+...+.+++|+|++. +++++ +|.|++||+.+++.+..+..|...|++++|+| ++ .|++++.||.|++||+.+++
T Consensus 181 ~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 181 GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCC
T ss_pred ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCc
Confidence 01667789999999998 55555 89999999999999999999999999999999 77 58899999999999999999
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~ 926 (1101)
.+..+..|...|.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 258 LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999999999999999998 667999999999999987765443
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.3e-32 Score=301.68 Aligned_cols=293 Identities=11% Similarity=0.135 Sum_probs=209.7
Q ss_pred cCcEEEEEEecCCCceEEEEecCCc-------eEEEEE-cCCce----------eEEeecCCcCeEEEecccCCCccEEE
Q 001319 451 VGAVNDLAFAYPNKLLCVVTCGDDK-------LIKVWE-LSGRK----------LFNFEGHEAPVYSICPHHKENIQFIF 512 (1101)
Q Consensus 451 ~~~V~~l~~s~d~~~~~l~s~~~d~-------~v~iwd-~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~~l~ 512 (1101)
..||++++|+||++ +|++|+.|. .|++|+ ..+.. ...+.+|...|.++++. +..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEE
Confidence 45899999999999 899987543 599999 33321 12456788888888763 34666
Q ss_pred EeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE----EEec----ccC
Q 001319 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK----RTYA----GFR 584 (1101)
Q Consensus 513 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~----~~~~----~~~ 584 (1101)
++..++..++|... .++.+++|++...... .... ...
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 66544433333211 1223333333221100 0000 011
Q ss_pred CcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 585 KKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
...+.+++|+|||+++++++ .|++|++||+.+++.+..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 12477899999999987654 7899999999999998888633 369999999999999999855 56666655441
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEE
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVR 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 742 (1101)
......
T Consensus 209 ~~~~~~-------------------------------------------------------------------------- 214 (365)
T 4h5i_A 209 CIARKT-------------------------------------------------------------------------- 214 (365)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 110000
Q ss_pred EEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE
Q 001319 743 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 822 (1101)
Q Consensus 743 ~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 822 (1101)
. ..|...|.+++|+||+++++++
T Consensus 215 -------------------------------------------------------~--~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 215 -------------------------------------------------------D--FDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp -------------------------------------------------------C--CCTTEEEEEEEEEETTEEEEEE
T ss_pred -------------------------------------------------------c--CCCCCCEEEEEEcCCCCEEEEE
Confidence 0 0155567777888888777777
Q ss_pred c-CC----eEEEEECCCceE----EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee-ccCCCCee
Q 001319 823 T-GG----KISLFNMMTFKV----MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRIT 892 (1101)
Q Consensus 823 ~-dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~-~~h~~~V~ 892 (1101)
+ ++ .+++|++..+.. ...+.+|...|++++|+| ++++||+|+.|++|+|||+.+++++..+ .+|...|+
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 6 44 477788765543 346778999999999999 9999999999999999999999999875 79999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+|+|+|||++||||+.|++|+|||+...
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999653
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=300.24 Aligned_cols=311 Identities=13% Similarity=0.178 Sum_probs=240.8
Q ss_pred cccccCCccEEEEEEccCCCEEE-EEEC---CCeEEEEeecCCcccccceeeecccCcEEEEEEecC---CCceEEEEec
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVG-VAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG 472 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~la-s~~~---d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~~~l~s~~ 472 (1101)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ +. +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 45778999999999999996555 5555 89999999999875432 23379999999999999 57 799999
Q ss_pred CCceEEEEE-cCCc-eeEEeecCCcCeEEEeccc----CCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCC----ce
Q 001319 473 DDKLIKVWE-LSGR-KLFNFEGHEAPVYSICPHH----KENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGH----WC 541 (1101)
Q Consensus 473 ~d~~v~iwd-~~~~-~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~----~v 541 (1101)
.|+.|++|| .+++ .+..+.+|...|.+++|.+ .+++.+|++++.|+.|++||+.+.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 7776 8899999999999996532 3477899999999999999999876 4555544433 78
Q ss_pred EEEE----EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC---CCCEEEEEeCCCcEEEEEC
Q 001319 542 TTML----YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT---TQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 542 ~~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+++ |+|+++++++++. ++.|++||+++++.... ..+.. .+.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7899999999985 88999999999987555 34444 799999999 9999999999999999999
Q ss_pred CCCeeeEeec---cCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccc
Q 001319 615 DNVNILTSTD---AEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 615 ~~~~~~~~~~---~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
.+++....+. ...+...|.+++|+|+++ ++++++.||.|++||+..+...... . +++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-----------------~~g~ 303 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK-D-----------------SEGI 303 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C-C-----------------TTSC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc-c-----------------CCCC
Confidence 8876655443 113345899999999998 8999999999999999866322110 0 0010
Q ss_pred cccccCCCCCcceeccCCCCCCceEEEEEEeCCC-eEEEEcCCCCCCcccEEEEEeecCcccEE-EeecCCeEEEEEecC
Q 001319 691 SAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQ-CRLVTMPESTDTSSKVVRLLYTNSAVGLL-ALGSNGVQKLWKWHR 768 (1101)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~v~~w~~~~ 768 (1101)
.... .+. .....+ ..|...|.+++|+|+++.++ +++.||.+++|++..
T Consensus 304 ~~~~---------------------------~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 304 EMGV---------------------------AGSVSLLQNV---TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CCCC---------------------------CCEEEEEEEE---ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cccc---------------------------ccccceeecc---ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 0000 000 001111 34888999999999999998 799999999999753
No 93
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.8e-31 Score=294.95 Aligned_cols=279 Identities=10% Similarity=0.113 Sum_probs=236.5
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC-E
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~ 420 (1101)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5899999999999998 56889999999999998876211 0012457999999999999999 9
Q ss_pred EEEEECCCeEEEEee-cCCcccccceeeec--ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC---------Ccee
Q 001319 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (1101)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~l~~--h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~---------~~~~ 487 (1101)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88754 25778 999999999999 77 899999999999999 66 6667
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-CCe--eeeccCCCCceEEEEEcc-CCCEEEEeecCCCCC
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~ 563 (1101)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 7776 889999999976 43 99999999999999988 443 334455677899999999 9999999985 8
Q ss_pred ceEEEEeCCCC------eeEEEecccCC--------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 564 ~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
+.|++|+.... +....+.+|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+. .
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-E 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-S
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-C
Confidence 99999999887 77788887743 378999999999999999999999999999999988877650 3
Q ss_pred CCCCeeEEecCCCEEEEEEcCCc-EEEE
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~-i~iw 656 (1101)
..|.+++ |++++|++++.||. .+.+
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEec--CCCCeEEEEecCCcccccc
Confidence 3788888 99999999999998 4443
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.7e-32 Score=295.14 Aligned_cols=249 Identities=15% Similarity=0.208 Sum_probs=203.5
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg 418 (1101)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| ++
T Consensus 10 ~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCC
Confidence 36999999999999998 56999999999999998765321 023789999999999986 48
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCce---eEEeec
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEG 492 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~~---~~~~~~ 492 (1101)
++||+|+.|++|++||+.+++.. ....+.+|...|++++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999987532 22357799999999999998 66 799999999999999 44422 355678
Q ss_pred CCcCeEEEecccCC---------------CccEEEEeccCCeEEEEecCCC---CeeeeccCCCCceEEEEEccCC----
Q 001319 493 HEAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADG---- 550 (1101)
Q Consensus 493 h~~~v~~v~~~~~~---------------~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~d~---- 550 (1101)
|...|.+++|+|.. ++.+|++++.|++|++||++.. .....+..|...|.+++|+|++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 99999999998752 1468999999999999999755 3455678888999999999987
Q ss_pred CEEEEeecCCCCCceEEEEeCCCC---e-eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEG---T-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
.+|++++. |+.|++|++.+. . ....+..|.. .+.+++|+|++++|++++.|+.|++|+..
T Consensus 229 ~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999986 999999998762 1 2233445544 89999999999999999999999999975
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.7e-31 Score=303.03 Aligned_cols=272 Identities=19% Similarity=0.293 Sum_probs=236.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+|...|.|++| +|+ ++++|+.||.|++||+.+++.+. .+.+|...|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 46778999888 677 56899999999999999887664 37789999999999 89999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee---EEeecCCcCe
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~---~~~~~h~~~v 497 (1101)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998766 6789999999999974 4 799999999999999 666655 6778999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.++++ ++.++++++.||.|++||+++++....+..+...|.++.+ ++.++++++. ++.|++||+.+++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 4579999999999999999999999999999999999998 5789999885 899999999999999
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe---------eeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
..+.+|.. .+.+++| +++++++|+.||.|++||+.++. .+..+..+ ...|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEe
Confidence 99999877 7888888 78899999999999999997765 66666655 447999999 788999999
Q ss_pred cCCcEEEEEcccc
Q 001319 649 ADNGFKILANAIG 661 (1101)
Q Consensus 649 ~d~~i~iwd~~~~ 661 (1101)
.||.|++||+.+.
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999876
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.2e-31 Score=303.80 Aligned_cols=295 Identities=12% Similarity=0.150 Sum_probs=239.7
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~las~ 424 (1101)
....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 3456899999876767788999999999966433210 1124788999999999999 99999999
Q ss_pred ECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe--ecCCcCe
Q 001319 425 FTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPV 497 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~--~~h~~~v 497 (1101)
+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|++|++|| .+++.+..+ .+|.+.|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 223368899999999999999844 899999999999999 888999999 8899999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCc-eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.+++|++ ++.+|++++.|+.|++||+++++....+ ..+... +.+++|+|++++++++.. ...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999987 6689999999999999999998888777 566654 899999999999998831 1138999999999876
Q ss_pred e-EEEecccCCcceEEEEEeCCCCEEEEE-eCCCcEEEEECCCCee-eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 576 I-KRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 576 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
. ...........+..++|+|++++++++ +.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 333333333468899999999999764 5799999999998874 444444434558999999999988764 5679
Q ss_pred EEEEEcccc
Q 001319 653 FKILANAIG 661 (1101)
Q Consensus 653 i~iwd~~~~ 661 (1101)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999865
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.3e-32 Score=295.31 Aligned_cols=249 Identities=17% Similarity=0.292 Sum_probs=205.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|+||+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 47889999999999999999999999999999999987532 22368899999999999864 67 799999999999
Q ss_pred EEE-cCC--ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe---eeeccCCCCceEEEEEccC---
Q 001319 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1101)
Q Consensus 479 iwd-~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d--- 549 (1101)
+|| .++ ..+..+.+|...|.+++|+|+.++.+|++++.|++|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 665 4667888999999999999876678999999999999999987642 2445667778999999998
Q ss_pred --------------CCEEEEeecCCCCCceEEEEeCCCC---eeEEEecccCCcceEEEEEeCCC----CEEEEEeCCCc
Q 001319 550 --------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQ 608 (1101)
Q Consensus 550 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 608 (1101)
+++|++++. |+.|++||+..+ +....+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888875 899999999765 46677888877 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 609 IKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 11222223 3479999999999999999999999999975
No 98
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-30 Score=295.51 Aligned_cols=281 Identities=15% Similarity=0.256 Sum_probs=230.0
Q ss_pred EEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeE
Q 001319 740 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 819 (1101)
Q Consensus 740 i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 819 (1101)
+..+.++ +..+++++.||.|++|++... ........ .|...|.+++|+|++++|
T Consensus 96 ~~~~~~s--~~~l~~~~~d~~v~lw~~~~~----------------------~~~~~~~~--~~~~~v~~v~~s~~~~~l 149 (401)
T 4aez_A 96 LNLLDWS--NLNVVAVALERNVYVWNADSG----------------------SVSALAET--DESTYVASVKWSHDGSFL 149 (401)
T ss_dssp CBCEEEC--TTSEEEEEETTEEEEEETTTC----------------------CEEEEEEC--CTTCCEEEEEECTTSSEE
T ss_pred EEEEeec--CCCEEEEECCCeEEEeeCCCC----------------------cEeEeeec--CCCCCEEEEEECCCCCEE
Confidence 4445555 456999999999999986532 22211111 278899999999999999
Q ss_pred EEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cceEEEeeccCCCCeeEEEEc
Q 001319 820 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 820 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s 897 (1101)
++++ ||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+. .+..+..+.+|.+.|.+++|+
T Consensus 150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 9998 89999999999999999999999999999954 699999999999999998 567788899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE-EEEEe---CCeEEEEEcCCceeeeEe
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR-MLVVH---ETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~---d~~i~v~d~~~~~~~~~~ 973 (1101)
|++++|++++.||.|++||+.+++... ...++. ..+.+++|+|++.. +++++ |+.|++||+.+++.+..+
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~-----~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~ 300 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKF-----TKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEE-----EECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccE-----EecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 999999999999999999999865432 223333 78999999997754 44453 899999999999998888
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEE--EeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFA--TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
.. ...|.+++|+|+|++|++ |+.||.|++||+.++........ .+|.. .+.+++|+| ++.+|+
T Consensus 301 ~~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~--------~~h~~--~v~~~~~s~-dg~~l~ 365 (401)
T 4aez_A 301 DA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI--------PAHDT--RVLYSALSP-DGRILS 365 (401)
T ss_dssp EC----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--------ECCSS--CCCEEEECT-TSSEEE
T ss_pred eC----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--------cCCCC--CEEEEEECC-CCCEEE
Confidence 64 678999999999999999 44899999999999766554331 11444 456899999 799999
Q ss_pred EEECCCeEEEEeCCCCCCc
Q 001319 1052 IGLTDGSVKVMEPSESEGK 1070 (1101)
Q Consensus 1052 s~~~Dg~v~iWd~~~~~~~ 1070 (1101)
+++.||.|++|++.+++..
T Consensus 366 s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTSEEEEEECCC----
T ss_pred EEeCCCcEEEEECCCCccc
Confidence 9999999999999998843
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=2e-30 Score=292.49 Aligned_cols=288 Identities=17% Similarity=0.232 Sum_probs=237.4
Q ss_pred cceeEee-cCCCcEEEEEEecC---CceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccE
Q 001319 335 RTVAVSL-HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1101)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspd---g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v 409 (1101)
......+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|...|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v 89 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGPV 89 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSCE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCCE
Confidence 3344444 49999999999999 56 678999999999999987 44331 2377899999
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEE--ecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~--s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|++++| ++++. +|++++.|+.|++|| .+++.
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSC
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcE
Confidence 999999999999999999999999999987554 5679999999999 88888 899999999999999 88888
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEEEEccCCCE----EEEeecCC
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR----LFSCGTSK 560 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~----l~~~~~~~ 560 (1101)
+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .....+.++++.++... +++++.
T Consensus 164 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-- 236 (368)
T ss_dssp SEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--
T ss_pred EEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC--
Confidence 88888765 566666543 478889999999999998876554332 23445677777666654 888875
Q ss_pred CCCceEEEEeCCCC---eeEEEecccCCc-----------ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 561 DGDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 237 --dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 237 --EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp --TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 899999999987 567777777643 5899999999999999999999999999999999888765
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 315 ~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 D--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp S--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred C--CCceEEEECCCCCeEEEEecccccccccc
Confidence 4 48999999999999999999886555544
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=3.5e-30 Score=299.00 Aligned_cols=248 Identities=12% Similarity=0.184 Sum_probs=205.1
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcc--------cccceeeeccc------------CcEEEEEEecCC
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHV------------GAVNDLAFAYPN 463 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~--------~~~~~~l~~h~------------~~V~~l~~s~d~ 463 (1101)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999998762 11233678998 889999999998
Q ss_pred --CceEEEEecCCceEEEEE-cCCcee---------------------------------------EE-eecCCcCeEEE
Q 001319 464 --KLLCVVTCGDDKLIKVWE-LSGRKL---------------------------------------FN-FEGHEAPVYSI 500 (1101)
Q Consensus 464 --~~~~l~s~~~d~~v~iwd-~~~~~~---------------------------------------~~-~~~h~~~v~~v 500 (1101)
. .|++++.|++|++|| .++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 799999999999999 443321 12 36899999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeee--------eccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEeC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--------DYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--------~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
+|++ ++.+|+++ .|+.|++||++...... .+..|...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9988 56899998 79999999998544333 255778899999999999 89999986 899999999
Q ss_pred CCCee----EEEecccCC-----------cceEEEEEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCC----
Q 001319 572 SEGTI----KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPN---- 631 (1101)
Q Consensus 572 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 631 (1101)
.+++. ...+.++.. ..+.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788888764 27999999999999999999 9999999997 887777776543111
Q ss_pred ---------CCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 632 ---------LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 632 ---------v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999876
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=3.2e-29 Score=287.33 Aligned_cols=284 Identities=15% Similarity=0.221 Sum_probs=234.6
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
-....+.|++++ +++++.|++|++||... |.+... +...+|...|++++|+|||+
T Consensus 106 ~y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~~-~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 106 YYLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQL-LQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp TTCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEE-EECCSTTCCEEEEEECTTSS
T ss_pred ccceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEE-EEecCCCCcEEEEEECCCCC
Confidence 345678999764 56666799999998643 332221 11124788999999999999
Q ss_pred eEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-eEEEeeccCCCCeeEEE
Q 001319 818 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLA 895 (1101)
Q Consensus 818 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~ 895 (1101)
+||+|+ ||.|++||+.+++.+..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999998 8999999999999999999999999998885 579999999999999998764 55678899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE-EEE---eCCeEEEEEcCCceeee
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM-LVV---HETQLAIYDASKMERIR 971 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~---~d~~i~v~d~~~~~~~~ 971 (1101)
|+|+++++++++.|+.|++|+..+++...... .....+. ..|.+++|+|++..+ +++ .|+.|++||+.+++.+.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~-~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCS-EEECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceee-eeecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 99999999999999999999999876543222 2222333 789999999976554 443 38999999999999988
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATF--CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
.+.. ...+.++.|+++++.+++++ .||.|+|||+.+++++..+.+ |.. .+++++|+| |+.+
T Consensus 316 ~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g----------H~~--~V~~l~~sp-dg~~ 378 (420)
T 4gga_A 316 AVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG----------HTS--RVLSLTMSP-DGAT 378 (420)
T ss_dssp EEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC----------CSS--CEEEEEECT-TSSC
T ss_pred eecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC----------CCC--CEEEEEEcC-CCCE
Confidence 8876 56799999999999988765 799999999999999988874 554 567999999 7999
Q ss_pred EEEEECCCeEEEEeCCCCC
Q 001319 1050 FAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1050 l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
|+||+.||+|+|||+.+..
T Consensus 379 l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 379 VASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEETTTEEEEECCSCSS
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999998755
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.2e-30 Score=289.73 Aligned_cols=297 Identities=9% Similarity=0.118 Sum_probs=219.4
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--C
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d 417 (1101)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCC
Confidence 346999999999999998 568999999999999987643211 1124678999999999999 6
Q ss_pred CCEEEEEECCCeEEEEeecCCccc------ccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCceeE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~------~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
+++|++|+.||.|++||+.+++.. .....+.+|.+.|.+++|+|+ +. ++++++.|+.|++|| .+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 999999999999999999987431 233467799999999999999 88 899999999999999 7776554
Q ss_pred Eee-------------cCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCCe--eeeccCCCCceEEEEEccCC--
Q 001319 489 NFE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG-- 550 (1101)
Q Consensus 489 ~~~-------------~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d~-- 550 (1101)
.+. +|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 433 68889999999884 1257999999999998888777665 55677788899999999998
Q ss_pred --CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE----EeCCCcEEEEECCCCeeeEeec
Q 001319 551 --SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA----VGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 551 --~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+++++++. |+.|++||+.++........... ........+....+.. +.....+.+|+....+.+..+.
T Consensus 229 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 229 WYQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp SSEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEEC
T ss_pred cceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 78999885 89999999987655444333222 2222333333333333 2344556677766677777776
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.+. ..|.+++|+|++++|++++.||.|++|++.++
T Consensus 304 ~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 304 DHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 554 47999999999999999999999999999876
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4.8e-29 Score=274.69 Aligned_cols=281 Identities=16% Similarity=0.212 Sum_probs=227.8
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
.+.|+||+++ .|+++. |++|++||+.++++++.+..+. ...|.+++|+|+++++++|+.||.|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4679999886 677664 8899999999999998876543 33699999999999999999999999999999999
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCC
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 699 (1101)
+..+..+.. ....+++++..+++++.++.+++|+..........+
T Consensus 102 ~~~~~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------------------------------- 146 (318)
T 4ggc_A 102 LRNMTSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------------------- 146 (318)
T ss_dssp EEEEECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------------------------------
T ss_pred EEEecCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE-------------------------------
Confidence 998876643 445667788899999999999999987653222211
Q ss_pred CcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeee
Q 001319 700 NCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 779 (1101)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 779 (1101)
.+|...+..+.+.+++..+++++.||.|++||+...+.....
T Consensus 147 ----------------------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 188 (318)
T 4ggc_A 147 ----------------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP---- 188 (318)
T ss_dssp ----------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----
T ss_pred ----------------------------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----
Confidence 237788899999999999999999999999997643211100
Q ss_pred eccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEE---EEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEec
Q 001319 780 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM---SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 855 (1101)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la---~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 855 (1101)
..... .+...|.++++++++..++ +++ ++.|++||........... +...+..++|++
T Consensus 189 ---------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~ 250 (318)
T 4ggc_A 189 ---------------LQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP 250 (318)
T ss_dssp ---------------SEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET
T ss_pred ---------------eeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc
Confidence 00011 2778899999999876443 344 6889999999887776654 567899999999
Q ss_pred CCCCEEEEEe--CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 856 QDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 856 ~~~~~la~g~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
++..+++++ .||.|+|||+.+++++..+.+|.+.|++++|+||+++|+||+.||+|++||+..
T Consensus 251 -~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 251 -HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 666666544 799999999999999999999999999999999999999999999999999976
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-30 Score=289.85 Aligned_cols=252 Identities=15% Similarity=0.203 Sum_probs=209.2
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--C
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--g 418 (1101)
-+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|...|.+++|+|+ +
T Consensus 8 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp EECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCGGGC
T ss_pred cCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCCCCCC
Confidence 35999999999999998 56899999999999998432211 1237789999999999987 9
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCC--ceeEEeecC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~--~~~~~~~~h 493 (1101)
++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .++ .....+.+|
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred CEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 99999999999999999998621 22257789999999999999 88 899999999999999 555 345567889
Q ss_pred CcCeEEEecccCC-----------CccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccC---CCEEEE
Q 001319 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSAD---GSRLFS 555 (1101)
Q Consensus 494 ~~~v~~v~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d---~~~l~~ 555 (1101)
...|.+++|+|.. ++.++++++.|+.|++||+++... ...+..|...|.+++|+|+ ++++++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999998842 468999999999999999987653 3466778889999999999 899999
Q ss_pred eecCCCCCceEEEEeCCCCe---eEEEec--ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 556 CGTSKDGDSFLVEWNESEGT---IKRTYA--GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~---~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
++. ++.|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++..+.
T Consensus 227 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 227 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 985 8999999998864 222222 2333 78999999999999999999999999998543
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.6e-29 Score=282.74 Aligned_cols=211 Identities=11% Similarity=0.146 Sum_probs=180.0
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCccc-ccceeeecccCcEEEEEEec--CCCceEEEEecCCce
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKL 476 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~ 476 (1101)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.|++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 458899999999999999999999999999999999976432 23346789999999999999 577 8999999999
Q ss_pred EEEEE-cCC---------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-----------
Q 001319 477 IKVWE-LSG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------- 535 (1101)
Q Consensus 477 v~iwd-~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------- 535 (1101)
|++|| .++ +.+..+.+|...|.+++|+++.++.++++++.||.|++||+.+.+....+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 99999 555 557888899999999999885336899999999999999998876543322
Q ss_pred --CCCCceEEEEEccC---CCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCC----CEEEEEe
Q 001319 536 --APGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQ----NHFLAVG 604 (1101)
Q Consensus 536 --~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~ 604 (1101)
.+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .+.+++|+|++ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEc
Confidence 45668999999997 899999885 88888888877765 667777766 89999999998 7999999
Q ss_pred CCCcEEEEECCCC
Q 001319 605 EDSQIKFWDMDNV 617 (1101)
Q Consensus 605 ~dg~i~iwd~~~~ 617 (1101)
.||.|++||+..+
T Consensus 238 ~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 238 KDGRIRIFKITEK 250 (351)
T ss_dssp TTSCEEEEEEEEC
T ss_pred CCCeEEEEeCCCC
Confidence 9999999998754
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.6e-29 Score=288.48 Aligned_cols=282 Identities=16% Similarity=0.301 Sum_probs=236.2
Q ss_pred ccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457778998887 89999999999999999999988766 68899999999999 677 899999999999999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEeec
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 89999999999999999999853 58999999999999999887765 567788889999998 7889999985
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.|++||+.+++.+..+.+|.. .+.+++++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-
Confidence 89999999999999999998877 78888884 6899999999999999999999998887654 47888888
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
++.+|++|+.||.|++||+.++.........
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 375 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT------------------------------------------------ 375 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT------------------------------------------------
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCccccccc------------------------------------------------
Confidence 7899999999999999998765211100000
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCC
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 769 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~ 769 (1101)
.....+ .+|...|.+++| ++..+++++.||.|++|++...
T Consensus 376 ------~~~~~~---~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 376 ------LCLRTL---VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp ------TEEEEE---CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred ------hheeec---cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 000011 337788888888 7888999999999999998653
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.5e-29 Score=280.26 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=210.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5679999999999999999999999999999999988732223356689999999999999872 388899999999999
Q ss_pred c-CCceeEEeec--CCcCeEEEecccCCCccEEEEeccCCeEEEEecCC---------CCeeeeccCCCCceEEEEEccC
Q 001319 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 482 ~-~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~d 549 (1101)
. .......+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...+.+++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878889999 999999999987 47999999999999999987 65555555 7778999999998
Q ss_pred CCEEEEeecCCCCCceEEEEeCCC-Cee--EEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCC------ee
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NI 619 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~ 619 (1101)
+ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++... +.
T Consensus 162 ~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEEEeC----CCeEEEEECCccccccceeeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 8 777764 88999999988 543 23333344 4799999999 9999999999999999999876 66
Q ss_pred eEeeccCCC-------CCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 620 LTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 620 ~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 666665532 337999999999999999999999999999876
No 108
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=286.44 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=216.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|.+++|+||+++||+|+.||.|+|||+..+.. .....+.+|.+.|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 4788999999999999999999999999999999984322 222367899999999999987 77 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEcc-----
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 548 (1101)
+|| .+++ .+..+.+|...|.+++|+++.++.++++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 7776 77888899999999999886336899999999999999998874 3445667888999999999
Q ss_pred --------CCCEEEEeecCCCCCceEEEEeCCCCe----eEEEecccCCcceEEEEEeCC---CCEEEEEeCCCcEEEEE
Q 001319 549 --------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 549 --------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1101)
++.++++++. ++.|++||+.++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999986 8899999997754 5567777776 8999999999 89999999999999999
Q ss_pred CCCCe---eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.++. .........+...|.+++|+|++++|++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98864 2333333334557999999999999999999999999998754
No 109
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.2e-29 Score=280.16 Aligned_cols=299 Identities=14% Similarity=0.164 Sum_probs=235.9
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCC-CCee-eeccCCCCceEEEEEccCCCEEEE
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT-MGSR-VDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
|+ ...+.+..+.+|.+.|.+++|+++. +|.+|++++.||.|++||+.+ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 44 5666778889999999999998852 158999999999999999997 4443 567778899999999999999999
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE--eCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF--DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
++. ++.|++||+.+++.+.. .+|.. .+.+++| +++++++++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQI-AQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCceee-ccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 986 89999999999987774 44555 7999999 8999999999999999999999999888887653 344
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1101)
++.+ .+..+++++.++.+.+|++............
T Consensus 175 ~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------------------- 209 (368)
T 3mmy_A 175 CADV--IYPMAVVATAERGLIVYQLENQPSEFRRIES------------------------------------------- 209 (368)
T ss_dssp EEEE--ETTEEEEEEGGGCEEEEECSSSCEEEEECCC-------------------------------------------
T ss_pred EEEe--cCCeeEEEeCCCcEEEEEeccccchhhhccc-------------------------------------------
Confidence 4444 4568889999999999998654211111100
Q ss_pred eEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 714 IILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 714 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
T Consensus 210 -------------------------------------------------------------------------------- 209 (368)
T 3mmy_A 210 -------------------------------------------------------------------------------- 209 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCe----EEEEc-CCeEEEEECCCc---eEEEEeeCCCC------------CeeEEEE
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSY----VMSAT-GGKISLFNMMTF---KVMTTFMSPPP------------ASTFLAF 853 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~----la~~~-dg~i~vwd~~~~---~~~~~~~~~~~------------~i~~l~~ 853 (1101)
.....+.++++.++... +++++ +|.|++||+... .....+..|.. .|++++|
T Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 210 --------PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp --------SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred --------cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 01122233333333322 55665 788888888766 45666666655 7999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001319 854 HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 854 s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-..+
T Consensus 282 sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 282 HP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp CT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred ec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 99 89999999999999999999999999999999999999999999999999999877766655443
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.4e-29 Score=285.62 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=207.2
Q ss_pred cEEEEEEccCCCEEE-EEECCCeEEEEeecCC-cccccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cC
Q 001319 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 408 ~v~~~~~spdg~~la-s~~~d~~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
....++++|+...++ +++.||.|+||++... +.......+.+|.+.|++++|+| +++ +|++|+.|++|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688999876554 5788999999999654 32233446789999999999999 777 899999999999999 66
Q ss_pred C-------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec--cCCCCceEEEEEccCCCEEE
Q 001319 484 G-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 484 ~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~ 554 (1101)
+ +++..+.+|...|.+++|++++ ..+|++++.|+.|++||+.+++....+ ..|...|.+++|+|++++++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 6 5678999999999999998843 259999999999999999999888888 78888999999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEe-cccCCcceEEEEEeCCCCEEEEE---eCCCcEEEEECCCCee-eEeeccCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1101)
+++. ++.|++||+++++.+..+ .+|....+..++|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9985 899999999999999998 67777558889999999999998 7999999999998665 323322 233
Q ss_pred CCCCeeEEecCCCEEEEEE-cCCcEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~ 661 (1101)
..+.+++|+|++++|++++ .|+.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 4689999999999997554 7999999999876
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=283.93 Aligned_cols=299 Identities=12% Similarity=0.061 Sum_probs=232.1
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCc---eeccccceeeccccc----------------------------
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~---~~~~~~~~~~d~~~~---------------------------- 393 (1101)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999999 44544 67899999999998 3321 110000
Q ss_pred ------------CccccccccccCCccEEEEEEccCCCEE-EEEECCCeEEEEeec--CCcccccceeeecccCcEEEEE
Q 001319 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (1101)
Q Consensus 394 ------------~~~~~~~~~~~h~~~v~~~~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~l~~h~~~V~~l~ 458 (1101)
....+.....+|.+.|.+++|+|||++| |+|+.||.|++||+. +++.+..+. ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111234677789999999999996 889999999999999 777666321 136778999999
Q ss_pred EecCCCceEEEEecCCceEEEEE-cCCceeE----EeecCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCCeee
Q 001319 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF----NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1101)
Q Consensus 459 ~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~----~~~~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~ 532 (1101)
|+|+++ +|++|+.|+.|++|+ .+++... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6666443 78899999999999884 126899999999999999999888776
Q ss_pred e-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc------------------------CCcc
Q 001319 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------------------RKKS 587 (1101)
Q Consensus 533 ~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------------------~~~~ 587 (1101)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+ ....
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999985 899999999999988887642 1235
Q ss_pred eEEEEEeCCCCEEEEEe-CCCcEEEEEC--CCC---eeeEeeccCCCCCCCCeeEEecCCCEEEEEEc------CCcEEE
Q 001319 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (1101)
Q Consensus 588 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------d~~i~i 655 (1101)
+..++|+|+++++++++ .++.|++|++ ..+ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999998 8999999999 555 666666654 36899999996533333332 455888
Q ss_pred EEcccc
Q 001319 656 LANAIG 661 (1101)
Q Consensus 656 wd~~~~ 661 (1101)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 876543
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.3e-27 Score=269.80 Aligned_cols=274 Identities=9% Similarity=0.054 Sum_probs=222.4
Q ss_pred ceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE-EEEECCCeEEEEee
Q 001319 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSY 435 (1101)
Q Consensus 357 ~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-as~~~d~~i~vwd~ 435 (1101)
++++++++.|+.|++||+.+++.+.. +.+|. .+.+++|+|||++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 45789999999999999998876642 44454 58999999999987 56668999999999
Q ss_pred cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEE-EE
Q 001319 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FS 513 (1101)
Q Consensus 436 ~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s 513 (1101)
.+++.+. .+..+. .+.+++|+|++++ ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9988665 444444 8999999999994 446777889999999 778877777754 4689999987 55666 78
Q ss_pred eccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE
Q 001319 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1101)
Q Consensus 514 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 593 (1101)
++.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+.+++....+..+. .+..++|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~ 207 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV 207 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence 888999999999988877766654 45799999999998865443 37899999999999888876532 5788999
Q ss_pred eCCCCEEEEEe---CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE-EEEEcCCcEEEEEccccccccccc
Q 001319 594 DTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 594 ~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~ 668 (1101)
+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.++ .....+
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~ 282 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATM 282 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEE
Confidence 99999999987 68999999999999888887643 46889999999988 56678999999999887 444333
No 113
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.8e-27 Score=249.29 Aligned_cols=297 Identities=13% Similarity=0.064 Sum_probs=204.1
Q ss_pred cEEEEEEccCCC---EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 408 SVSRVAWSPDGN---YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 408 ~v~~~~~spdg~---~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
.+.++-|-.-|- .+++++. ..|++|+..++......+++.+|..+|..++|.||..+++.++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN----------- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-----------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-----------
Confidence 567777755443 5666665 4799999999855556668999999999999999988755554331
Q ss_pred ceeEEeecCCcCeEEEecccCCC----ccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
-+...|.+++++| | ++++++++.+ +++|++. +|+.+.+++.
T Consensus 109 -------~~~~~v~sla~sp--d~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~-- 153 (356)
T 2w18_A 109 -------LEIREIRALFCSS--DDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGT-- 153 (356)
T ss_dssp -------SSEEEEEEECC--------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESS--
T ss_pred -------ccccceEEEEECC--CccccccEEEeCCCe--EEEEecC----------------------CCcEEEeccc--
Confidence 1455789999977 5 6889888754 7778653 4444444321
Q ss_pred CCCceEEEEeC-CCCeeEEEecccCCcceEEEEEeC---CCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-CCCCCCee
Q 001319 561 DGDSFLVEWNE-SEGTIKRTYAGFRKKSNGVVQFDT---TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRL 635 (1101)
Q Consensus 561 ~~~~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v 635 (1101)
..++.|++|++ .+|+.+..+.+|.. .+..++|++ ++..|++++.|++|+|||+.+++.+.++..+. +...+.++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEE
Confidence 12667777777 44666677777766 788889999 77999999999999999999999999986432 23355666
Q ss_pred EEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1101)
+|+|+|.++++++.+.. +|+
T Consensus 233 afSpdG~~lvs~s~~~~--~w~---------------------------------------------------------- 252 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCA--KES---------------------------------------------------------- 252 (356)
T ss_dssp EEEETTEEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCCEEEEeccCCC--cce----------------------------------------------------------
Confidence 78888877776654322 121
Q ss_pred EEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 716 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
+++++.|+++++|
T Consensus 253 ------------------------------------laSGs~D~tIklW------------------------------- 265 (356)
T 2w18_A 253 ------------------------------------ESLRSPVFQLIVI------------------------------- 265 (356)
T ss_dssp -----------------------------------------CCEEEEEE-------------------------------
T ss_pred ------------------------------------eeccCCCcEEEEE-------------------------------
Confidence 2333444444544
Q ss_pred eccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEe-----eCCCCCeeEEEEecCCCCEEEEEeCCCcE
Q 001319 796 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDSTI 870 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~v 870 (1101)
|..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|
T Consensus 266 -----------------------------------d~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTI 307 (356)
T 2w18_A 266 -----------------------------------NPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTI 307 (356)
T ss_dssp -----------------------------------ETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCE
T ss_pred -----------------------------------ECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcE
Confidence 44444433332 234433333333 46799999999999
Q ss_pred EEEEeecceEEEeeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 871 HIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 871 ~iwd~~~~~~~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999988765 5899999999999999999999996
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.8e-28 Score=271.81 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=214.0
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.|.+.|++++|||||+ +||+|+.++ ++|||+.+++.... .+...+..++++++++++
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999998 568887664 78999987765431 122258889999999988
Q ss_pred E-EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCCcCeE
Q 001319 422 G-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1101)
Q Consensus 422 a-s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~~~v~ 498 (1101)
+ +|+.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCc
Confidence 5 56778999999999998766 443 67799999998764 33333 78999999 666 66666655 333
Q ss_pred EEecccCCCccEEEE--eccCCeEEEEecCCCC----------------eeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 499 SICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+++++ .+++. ++.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 444544 34554 6899999999998765 15677889999999999999999999986
Q ss_pred CCCce-EEEEeCCCCeeEEEec-c-cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE--eec-----------
Q 001319 561 DGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STD----------- 624 (1101)
Q Consensus 561 ~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~----------- 624 (1101)
|++ |++||+.+++.+..+. + |.. .+.+++|+|++++|++++.|++|++||+..+.... .+.
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 898 9999999999999998 5 554 89999999999999999999999999997653211 100
Q ss_pred -------c-CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 625 -------A-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 625 -------~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
. .........++|+++|+.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 011123477999999999999999999999998765
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.3e-26 Score=267.59 Aligned_cols=364 Identities=14% Similarity=0.168 Sum_probs=261.9
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE---EccCCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA---WSPDGN 419 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~---~spdg~ 419 (1101)
...+|..+.|+|....++..+......+++... ....+..++ |+|+++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 345788899999755444433222222333221 233456666 777666
Q ss_pred EEEEEE--------------CCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 420 YVGVAF--------------TKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 420 ~las~~--------------~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.+++.+ .++ .|..||..++. ......+..+ ..+.+++|+|++. ++++++.|+.|++|| .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 555432 233 34444444342 1222234444 4466999999666 788899999999999 7
Q ss_pred CCceeE-----EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 483 SGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 483 ~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
+++.+. .+.+|.+.|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 788776 4568899999999966 668999999999999999999888888888888999999999999987655
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
. .++.|++||+.+++.+..+..+. .+..++|+|+++++++++.++ . .+.
T Consensus 231 ~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-------------------~---~~~---- 279 (433)
T 3bws_A 231 W---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSA-------------------S---NQE---- 279 (433)
T ss_dssp T---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEES-------------------C---TTC----
T ss_pred c---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCC-------------------C---ccc----
Confidence 3 37899999999999988887643 488899999999988876321 0 000
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
..|+.|++||+.++. ....
T Consensus 280 ----------~~dg~i~~~d~~~~~-~~~~-------------------------------------------------- 298 (433)
T 3bws_A 280 ----------SGGGRLGIYSMDKEK-LIDT-------------------------------------------------- 298 (433)
T ss_dssp ----------SCCEEEEEEETTTTE-EEEE--------------------------------------------------
T ss_pred ----------cCCCeEEEEECCCCc-EEee--------------------------------------------------
Confidence 234556666654330 0000
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeec
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1101)
+
T Consensus 299 -----------------------------------~-------------------------------------------- 299 (433)
T 3bws_A 299 -----------------------------------I-------------------------------------------- 299 (433)
T ss_dssp -----------------------------------E--------------------------------------------
T ss_pred -----------------------------------c--------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCEeEEEecCCCCeE-EEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---------
Q 001319 798 VAGVNLEEAVPCIALSKNDSYV-MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE--------- 866 (1101)
Q Consensus 798 ~~~~~~~~~v~~~~~s~dg~~l-a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~--------- 866 (1101)
.+...+.+++|+|+++.+ ++++ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++.
T Consensus 300 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 300 ----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp ----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCT
T ss_pred ----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecCCCcccccc
Confidence 012235667888888755 4444 7889999999888887776 567899999999 8888888876
Q ss_pred ------CCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 001319 867 ------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDT 919 (1101)
Q Consensus 867 ------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~ 919 (1101)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999888876 457999999999999988875 99999999864
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-29 Score=306.59 Aligned_cols=252 Identities=15% Similarity=0.194 Sum_probs=210.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--C
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--g 418 (1101)
-+|.+.|++++|+|+|++ +++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ +
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSC
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCC
Confidence 469999999999999985 6899999999999998433211 1247889999999999998 9
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCC--ceeEEeecC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~--~~~~~~~~h 493 (1101)
++|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ ++ ++++|+.||.|++|| .++ .....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 99999999999999999997621 22367789999999999999 88 899999999999999 544 345677889
Q ss_pred CcCeEEEecccCC-----------CccEEEEeccCCeEEEEecCCCC----eeeeccCCCCceEEEEEccC---CCEEEE
Q 001319 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD---GSRLFS 555 (1101)
Q Consensus 494 ~~~v~~v~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~d---~~~l~~ 555 (1101)
...|.+++|+|.. ++.++++++.||.|++||+++.. ....+..|...|.+++|+|+ ++++++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 9999999998842 46799999999999999998774 34566788899999999999 899999
Q ss_pred eecCCCCCceEEEEeCCCCe-----eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 556 CGTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
++. ++.|++||+.++. .......+.. .+.+++|+|+++++++++.||.|++|++..+.
T Consensus 225 ~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Eec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 986 8999999998864 2222233444 78889999999999999999999999998644
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.5e-27 Score=275.51 Aligned_cols=302 Identities=9% Similarity=0.067 Sum_probs=244.7
Q ss_pred ccccCCCC--cceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLP--RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|.++... ......+.+...+.+++|+|+++ ++++++.++.|++||+.+++...... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 56655532 25556666667788999999654 77888889999999999887654211 113568
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
|...|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999987665 56689999999999999994 446777899999999 78
Q ss_pred CceeEEeecCCcCeEEEecccCCCccEEEEec--------cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 484 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
++.+..+..+. .+.+++|++ +++++++++ .|+.|++||+.+++....+ .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKIG-LPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCCS-EEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCCC-CceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 88887777654 589999977 567888887 4889999999887665544 23446889999999987765
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC---------------CCcEEEEECCCCeee
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~ 620 (1101)
.+. .++.|++||+.+++.+..+... ..+..++|+|+++++++++. ||.|++||..+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 543 4889999999999988887632 36888999999999998876 579999999999998
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEc-CCcEEEEEcc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~ 659 (1101)
..+.... .+.+++|+|+|++|++++. |+.|++|++.
T Consensus 395 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 8887532 5789999999999998875 9999999975
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.4e-27 Score=247.31 Aligned_cols=282 Identities=14% Similarity=0.112 Sum_probs=205.2
Q ss_pred eEEEEEeCCCC---EEEEEeCCCcEEEEECCCC---eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 588 NGVVQFDTTQN---HFLAVGEDSQIKFWDMDNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 588 v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+..+.|-..+- -+++++ ...|++|+..++ +++++...+.. +|..+.+.||-.-|++..-.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~----------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEV--PVLQIVPVPDVYNLVCVALG----------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSS--CEEEECCCTTCCSCEEEEEC-----------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCc--eeEEEEEcCcccceeeeeec-----------
Confidence 34455544332 345555 568999999998 78888877644 79999999976544432210
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
.-+...|.
T Consensus 108 ------------------------------------------------------------------------~~~~~~v~ 115 (356)
T 2w18_A 108 ------------------------------------------------------------------------NLEIREIR 115 (356)
T ss_dssp ------------------------------------------------------------------------SSSEEEEE
T ss_pred ------------------------------------------------------------------------cccccceE
Confidence 11455677
Q ss_pred EEEeecC----cccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 742 RLLYTNS----AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 742 ~~~~s~~----~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
.++++|+ +..++.++.+ +++|++ ++|+
T Consensus 116 sla~spd~~~~~~~l~s~g~~--~~v~~l-----------------------------------------------~~g~ 146 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNI--KAVLGL-----------------------------------------------TKRR 146 (356)
T ss_dssp EECC------CCEEEEEEEEE--EEEEEE-----------------------------------------------TTTE
T ss_pred EEEECCCccccccEEEeCCCe--EEEEec-----------------------------------------------CCCc
Confidence 8888888 7777776643 555532 4677
Q ss_pred eEEEEc---CCeEEEEEC-CCceEEEEeeCCCCCeeEEEEec--CCCCEEEEEeCCCcEEEEEeecceEEEeeccCC---
Q 001319 818 YVMSAT---GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ--- 888 (1101)
Q Consensus 818 ~la~~~---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--- 888 (1101)
++.++. |+.|++|++ .+|+.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+.+|+++..+.+|.
T Consensus 147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v 226 (356)
T 2w18_A 147 LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ 226 (356)
T ss_dssp EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence 777754 888999999 55888888889999999888887 467999999999999999999999999998754
Q ss_pred CCeeEEEEcCCCCEE------------EEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 889 KRITGLAFSTSLNIL------------VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l------------~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
..+.+++|+|||+++ ++|+.|++|++||..+++.........+.++. ... +..+.++.++++++
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~--lsg~~sg~~lASgS~ 303 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRF--LEGDVKDHCAAAILT 303 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCE--EEEEEETTEEEEEET
T ss_pred eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-cee--EccccCCCEEEEEcC
Confidence 367788999999876 66889999999999998866544433344543 222 33344477888865
Q ss_pred CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 956 ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 956 d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
|++|+|||+.+++.+..+..|. ...+.+++|||||++|++|+.|++|+|||+
T Consensus 304 DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999998653 334556999999999999999999999996
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=3.7e-28 Score=279.08 Aligned_cols=265 Identities=14% Similarity=0.243 Sum_probs=215.1
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
....++|.+.|++++|+|++..++|+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45667899999999999985558899999999999999763111000 000001224778999999999999
Q ss_pred CCC-EEEEEECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---cee
Q 001319 417 DGN-YVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKL 487 (1101)
Q Consensus 417 dg~-~las~~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~~~ 487 (1101)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999885432 223457799999999999995444 899999999999999 555 577
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-CCeeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCce
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSF 565 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~ 565 (1101)
..+..|...|.+++|++.. ..++++++.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 8888999999999998853 24789999999999999998 455677778889999999999996 5777764 889
Q ss_pred EEEEeCCC--------------CeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 001319 566 LVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 566 i~iwd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1101)
|++||+.. .+.+..+.+|.. .+..++|+|+++ .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356677777766 799999999999 8899999999999998754
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.8e-26 Score=262.42 Aligned_cols=327 Identities=10% Similarity=0.099 Sum_probs=256.1
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEE-EEeccCCeEEEEecCCCCeeeeccCCCCceEEE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1101)
++++++.|+.|++|| .+++.+..+.+|. .+.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999 8888888888775 489999987 55665 677899999999999888877776555 89999
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE-EEEeCCCcEEEEECCCCeeeEee
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999876653 36899999999999988887654 57889999999988 57778999999999999988887
Q ss_pred ccCCCCCCCCeeEEecCCCEE-EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcc
Q 001319 624 DAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1101)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 702 (1101)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++. ....
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~----------------------------------- 195 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDT----------------------------------- 195 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEE-----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEE-----------------------------------
Confidence 7643 46899999999988 566778999999986541 0000
Q ss_pred eeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 703 VERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
.
T Consensus 196 -------------------------------------------------------------~------------------ 196 (391)
T 1l0q_A 196 -------------------------------------------------------------V------------------ 196 (391)
T ss_dssp -------------------------------------------------------------E------------------
T ss_pred -------------------------------------------------------------E------------------
Confidence 0
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc----CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT----GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 858 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 858 (1101)
.+...+.+++|+|+|+++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++
T Consensus 197 -------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg 255 (391)
T 1l0q_A 197 -------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DG 255 (391)
T ss_dssp -------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TS
T ss_pred -------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CC
Confidence 0233467788999998877764 6889999999999988888754 578999999 77
Q ss_pred CEE-EEEeCCCcEEEEEeecceEEEeeccCCCCee---EEEEcC------------CC----------CEEEEEeCCCcE
Q 001319 859 NII-AIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT---GLAFST------------SL----------NILVSSGADAQL 912 (1101)
Q Consensus 859 ~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~---~l~~s~------------d~----------~~l~s~s~Dg~v 912 (1101)
++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+...+.|..+
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 766 6778899999999999999988877755431 122222 11 346666778999
Q ss_pred EEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 913 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 913 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
++|++..+.... ..-....|+++|.+.+.
T Consensus 336 ~~W~~~~g~~~~------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 336 WKWDFGDGSSSK------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EEEECSSSCEEC------------SSSCEECCSSCEEEEEE
T ss_pred EEEECCCCcccC------------cCCCeEEeCCCceEEEE
Confidence 999998865311 12234679999988775
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2e-27 Score=264.91 Aligned_cols=294 Identities=11% Similarity=0.094 Sum_probs=204.9
Q ss_pred EEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEE
Q 001319 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1101)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1101)
+|.+.+.........|...|.+++|+|||++|++++ +..+++||..+++.......+ .+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEEEEEEEECS---CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcceeeeeecC---CeEEEEEcCCCCEEE
Confidence 355555555556677888999999999999999986 335789999988776654432 467788989888885
Q ss_pred -EEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcc
Q 001319 602 -AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1101)
Q Consensus 602 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1101)
+++.|++|++||..+++.+..+... ..|.+++|+++. ++++ .++.|++||+.+....+..+..
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------- 138 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------- 138 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----------
T ss_pred EEECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----------
Confidence 5778899999999999999888743 368999998764 4444 4789999998765211111100
Q ss_pred eeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCe
Q 001319 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 760 (1101)
Q Consensus 681 ~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 760 (1101)
.
T Consensus 139 ----------------------------------------------------------~--------------------- 139 (355)
T 3vu4_A 139 ----------------------------------------------------------F--------------------- 139 (355)
T ss_dssp ----------------------------------------------------------E---------------------
T ss_pred ----------------------------------------------------------C---------------------
Confidence 0
Q ss_pred EEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE--c-CCeEEEEECCCce-
Q 001319 761 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA--T-GGKISLFNMMTFK- 836 (1101)
Q Consensus 761 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~-dg~i~vwd~~~~~- 836 (1101)
...+++++ .+++++ + +|.|++||+.++.
T Consensus 140 ----------------------------------------------~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 140 ----------------------------------------------GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp ----------------------------------------------EEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred ----------------------------------------------CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence 01122222 233332 2 4555555555433
Q ss_pred --------------E-EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCc-EEEEEeecceEEEeec-c-CCCCeeEEEEcC
Q 001319 837 --------------V-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDST-IHIYNVRVDEVKSKLK-G-HQKRITGLAFST 898 (1101)
Q Consensus 837 --------------~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~-v~iwd~~~~~~~~~~~-~-h~~~V~~l~~s~ 898 (1101)
+ +..+.+|...|++++|+| ++++||+|+.||+ |+|||+.+++++..+. + |.+.|.+++|+|
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC
Confidence 2 677889999999999999 9999999999998 9999999999999998 6 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccccceEE------------------eecCCCCCCCcceEEEcCCCCEEEEEe-CCeE
Q 001319 899 SLNILVSSGADAQLCVWSIDTWEKRKSVTI------------------HIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL 959 (1101)
Q Consensus 899 d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i 959 (1101)
|+++|++++.|++|++||+..+.......+ ..... .......++|++|+..++++. |+.+
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 999999999999999999987643322111 11111 112347799999999999965 9999
Q ss_pred EEEEcCCce
Q 001319 960 AIYDASKME 968 (1101)
Q Consensus 960 ~v~d~~~~~ 968 (1101)
++|++..++
T Consensus 330 ~~~~~~~~~ 338 (355)
T 3vu4_A 330 ETFKVVFDD 338 (355)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEcCC
Confidence 999986543
No 122
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=2.3e-27 Score=272.54 Aligned_cols=253 Identities=15% Similarity=0.232 Sum_probs=211.4
Q ss_pred cccccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCC-------cccccceeeecccCcEEEEEEecCCCceEEEEe
Q 001319 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~ 471 (1101)
....+|.+.|++++|+|+ +.+||+|+.||.|++||+.+. ........+.+|...|.+++|+|++.. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 346779999999999997 789999999999999999862 112333468899999999999999876 69999
Q ss_pred cCCceEEEEE-cCCce-------eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC---CeeeeccCCCCc
Q 001319 472 GDDKLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHW 540 (1101)
Q Consensus 472 ~~d~~v~iwd-~~~~~-------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~ 540 (1101)
+.||.|++|| .++.. ...+.+|...|.+++|++. ++.++++++.|+.|++||+++. .....+..+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999 44221 4567789999999999885 3479999999999999999987 455667788889
Q ss_pred eEEEEEccCCC-EEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 001319 541 CTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 541 v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1101)
|++++|+|++. .+++++. ++.|++||+++ +..+..+.+|.. .+.+++|+|+++ .+++++.||.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred eEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999998 5777775 89999999998 567888888876 899999999985 5888999999999999872
Q ss_pred --------------eeeEeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEcccc
Q 001319 618 --------------NILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 618 --------------~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.+.....+ ...|.+++|+|++. +|++++.||.|++|++...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 344444443 44799999999999 9999999999999998755
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-28 Score=297.47 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=213.8
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|++++|+|+|++||+|+.||.|+|||+.++.. .....+.+|.+.|++++|+|+ ++ +|++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999985432 223368899999999999998 77 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEcc-----
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 548 (1101)
+|| .+++ .+..+.+|...|.+++|+|+.++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888899999999999986437899999999999999998873 3445667888999999999
Q ss_pred --------CCCEEEEeecCCCCCceEEEEeCCCC----eeEEEecccCCcceEEEEEeCC---CCEEEEEeCCCcEEEEE
Q 001319 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 549 --------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1101)
++.++++++. ++.|++||+.++ .....+.+|.. .+.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999986 899999999877 56677788876 8999999999 89999999999999999
Q ss_pred CCCCeee---EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 12222334557999999999999999999999999998865
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-27 Score=264.57 Aligned_cols=279 Identities=8% Similarity=0.057 Sum_probs=217.4
Q ss_pred EEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC
Q 001319 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1101)
Q Consensus 458 ~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 536 (1101)
.+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4455677 899999999999999 8888888876 567888888763 99999999999998632
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC--CCCEEEEEeCCCcEEEEEC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+.+||..+++.+..+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 3677898888877776633344799999999 9999999999999999999
Q ss_pred CCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
.+++.......+ +...|.+++|+|+|.+|++|+.||.|++||+.++......+..
T Consensus 157 ~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------------------ 211 (343)
T 3lrv_A 157 EDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------------------------ 211 (343)
T ss_dssp SSSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC------------------------
T ss_pred CCCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec------------------------
Confidence 999886665433 2336899999999999999999999999998765211000000
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 774 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~ 774 (1101)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC---CCCCee--
Q 001319 775 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS---PPPAST-- 849 (1101)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~-- 849 (1101)
+|...|.+++|+|+|.+|++++++.|++||+.+++....+.. |...+.
T Consensus 212 ---------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 212 ---------------------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp ---------------------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred ---------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccce
Confidence 167789999999999999999877999999988876555443 333444
Q ss_pred EEEEecCCCCEEEEEeC-CCcEEEEEeecceEEEeeccCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 001319 850 FLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFST---SLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 850 ~l~~s~~~~~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
+++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +.+.+++++.||.+.++-...
T Consensus 265 ~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 265 TYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 699999 9999999998 999999999765433222 5678889988 889999999999999886544
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=8.8e-28 Score=271.96 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=199.9
Q ss_pred CcEEEEEE---ecCCceEEEEEeccCcEEEEecCCCceecc-----ccceeecccccC-----ccccccccccCCccEEE
Q 001319 345 STVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFKIWDMAACS-----LPFQASIFKDVPISVSR 411 (1101)
Q Consensus 345 ~~V~~v~f---spdg~~llasg~~d~~i~iwd~~~~~~~~~-----~~~~~~d~~~~~-----~~~~~~~~~~h~~~v~~ 411 (1101)
....++.| +|++..++++| .++.|.+|+......... .....+...... .+........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 45556666 45555576665 678899998643322111 001111110000 00011123345556666
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccc--cceeeecccCcEEEEEEec--------CCCceEEEEecCCceEEEEE
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~--------d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+++++.+||+|+.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 6777788999999999999999999886543 2235779999999999998 777 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------------------------c
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------------------------D 535 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------------------------~ 535 (1101)
.++.++..+.+|..+|.+++|+|.+ ..+|++++.|++|++||+.++...... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 7888888888999999999998842 358999999999999999876543321 2
Q ss_pred CCCCceEEEEEc-cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEE------------------EEEeC-
Q 001319 536 APGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV------------------VQFDT- 595 (1101)
Q Consensus 536 ~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~~~- 595 (1101)
.+...+.++.|+ +|++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 345567888886 79999999985 89999999998876666554432 1211 23333
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 596 -TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 596 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
++.++++|+.||.|++||..+++.......+.. .|.+++|+|||++||+++.+| +.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 233556678999999999999988777665543 799999999999999998766 5566543
No 126
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.2e-27 Score=269.57 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=202.5
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeee--------------------------------------
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------------------------------------- 448 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~-------------------------------------- 448 (1101)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977666 57789999999998221111222
Q ss_pred ----------------cccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--CCceeEEee--cCCcCeEEEecccCCC
Q 001319 449 ----------------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLFNFE--GHEAPVYSICPHHKEN 507 (1101)
Q Consensus 449 ----------------~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~--~~~~~~~~~--~h~~~v~~v~~~~~~~ 507 (1101)
+|.+.|++++|+|+++. ++++|+.|+.|++|| . +++++..+. .|...|.+++|+| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34557999999999993 248999999999999 6 788888876 5778999999987 6
Q ss_pred ccEEEEeccCCeEEEEecCCCCeee----eccCCCCceEEEEEccC---CCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 508 IQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 508 ~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 6899999999999999998776543 66678889999999999 999999986 889999999999988874
Q ss_pred -cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----------------------CCCCCCCeeE
Q 001319 581 -AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------------------GGLPNLPRLR 636 (1101)
Q Consensus 581 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~v~ 636 (1101)
.+|.. .+.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|.+++
T Consensus 237 ~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 237 LFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred ecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 46665 89999999 9999999999999999999999988777532 1123678999
Q ss_pred EecCCCEEEEEE-cCCcEEEEEc
Q 001319 637 FSKEGNLLAVTT-ADNGFKILAN 658 (1101)
Q Consensus 637 ~s~~g~~l~~~~-~d~~i~iwd~ 658 (1101)
|+|++++|++++ .++.|++|++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999 8999999998
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-27 Score=266.28 Aligned_cols=267 Identities=8% Similarity=0.064 Sum_probs=210.6
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
.+.++++ ++++|+.||.|++||+.+++.+.. +. ...|.+++|+|+ +++|+.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456676 679999999999999999877642 11 456778889988 9999999999
Q ss_pred EEEeec---------CCcccccceeeecccCcEEEEEEec--CCCceEEEEecCCceEEEEE-cCCceeEEee-cCCcCe
Q 001319 431 QLYSYA---------GSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV 497 (1101)
Q Consensus 431 ~vwd~~---------~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-~h~~~v 497 (1101)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++|| .+++++.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1226778999999999 998 899999999999999 7888766664 455689
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCee-eeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|+|.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999987 6689999999999999999998877 67777 889999999999999999997 3389999999987
Q ss_pred eEEEecccCC--cce--EEEEEeCCCCEEEEEeC-CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec---CCCEEEEE
Q 001319 576 IKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVT 647 (1101)
Q Consensus 576 ~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~~ 647 (1101)
.+..+..+.. ..+ .+++|+|++++|++++. |+.+++|++......... .++..++|++ ++..++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655543211 122 36999999999999988 999999999765443332 2456788888 88999999
Q ss_pred EcCCcEEEEEcc
Q 001319 648 TADNGFKILANA 659 (1101)
Q Consensus 648 ~~d~~i~iwd~~ 659 (1101)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999887543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.1e-25 Score=263.54 Aligned_cols=274 Identities=10% Similarity=0.083 Sum_probs=216.5
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccc-cCCccEEEEEEccCCCEEEEEECCCe
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
+|+|+++ ++++++.|++|.+||..+++.+.. +. ++. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3789886 778999999999999999887652 33 343 889999999999999999999
Q ss_pred EEEEee--cCCcccccceeeecccCcEEEEEEec----CCCceEEEEec-CCceEEEEE-cCCceeEEeecC--------
Q 001319 430 IQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGH-------- 493 (1101)
Q Consensus 430 i~vwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~----d~~~~~l~s~~-~d~~v~iwd-~~~~~~~~~~~h-------- 493 (1101)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+|| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776655 454 445689999999 999 566666 589999999 899988887642
Q ss_pred --C-cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee--eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 494 --E-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 494 --~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
. ..+.++.++++. +.++++...++.|.+||+.+.+... .+ .....+..++|+|+|+++++++. .++.|.+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~---~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN---NSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG---GGTEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec---CCCeEEE
Confidence 2 268889998753 3677888899999999998765433 22 24556888999999998887654 3778999
Q ss_pred EeCCCCeeEEEecc----cCCcceEEEEEeCC-CCEEEEEe-CCCcEEEEECCC-------CeeeEeeccCCCCCCCCee
Q 001319 569 WNESEGTIKRTYAG----FRKKSNGVVQFDTT-QNHFLAVG-EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 569 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v 635 (1101)
||..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||..+ .+.+.++..++. .+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred EECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEE
Confidence 99999999988875 322 12222 5787 44455554 689999999998 888899887654 57889
Q ss_pred EEecCCCEEEEEE-------cCCcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTT-------ADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~-------~d~~i~iwd~~~~ 661 (1101)
+++|+|++|++++ .+++|.+||+.+.
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 9999999999987 2679999999876
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.8e-27 Score=266.78 Aligned_cols=249 Identities=6% Similarity=-0.073 Sum_probs=176.1
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc---
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--- 416 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--- 416 (1101)
...|...+....++++++ ++|+|+.|++|+|||..+++..... ....+.||.+.|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~ 149 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYS 149 (393)
T ss_dssp CC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEEC
T ss_pred ccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccc
Confidence 334556666666777776 6799999999999999988654321 1124889999999999998
Q ss_pred -----CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE-
Q 001319 417 -----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (1101)
Q Consensus 417 -----dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~- 489 (1101)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 150 ~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 150 ADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp TTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-----
T ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccc
Confidence 89999999999999999999876555 56689999999999999865 799999999999999 66654322
Q ss_pred ------------------------eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEE-
Q 001319 490 ------------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM- 544 (1101)
Q Consensus 490 ------------------------~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~- 544 (1101)
..+|...+.++.|.. +++..|++++.|+++++||+........+..+...+..+
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 246778888888863 377899999999999999998766555444443333222
Q ss_pred -----------------EEcc-CCC-EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC
Q 001319 545 -----------------LYSA-DGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 545 -----------------~~s~-d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
.+++ .+. ++++++ .++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs----~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHS----QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEET----TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEES
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEEC----CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeC
Confidence 2332 333 445554 389999999999998888888876 8999999999999999987
Q ss_pred CCcEEEEEC
Q 001319 606 DSQIKFWDM 614 (1101)
Q Consensus 606 dg~i~iwd~ 614 (1101)
+| +.+|.+
T Consensus 380 ~G-v~lvrL 387 (393)
T 4gq1_A 380 GS-VLLTRL 387 (393)
T ss_dssp SE-EEEEEE
T ss_pred CC-eEEEEE
Confidence 76 555554
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.5e-25 Score=259.34 Aligned_cols=325 Identities=14% Similarity=0.118 Sum_probs=252.0
Q ss_pred EEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEec--CCCCeeeec
Q 001319 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDY 534 (1101)
Q Consensus 458 ~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~ 534 (1101)
+|+|++. ++++++.|++|.+|| .+++++.++..+.. +..++|+| +|++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788887 899999999999999 89999999884333 88898977 7789999999999999999 777766666
Q ss_pred cCCCCceEEEEEcc----CCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc----------CCcceEEEEEeCCCCEE
Q 001319 535 DAPGHWCTTMLYSA----DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 535 ~~~~~~v~~~~~s~----d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l 600 (1101)
. .+..+..++|+| ||+++++++. .++.|.+||..+++++..+..+ ....+..+.++|+++.+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 5 455689999999 9999998874 3789999999999999888652 23357789999987665
Q ss_pred E-EEeCCCcEEEEECCCCeeeE--eeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccccCCCcccc
Q 001319 601 L-AVGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 601 ~-~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+ +...++.|.+||..+.+.+. .+.. ...+.+++|+|+|+++++++ .+++|.+||..++ +....+..
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~------ 364 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDV------ 364 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEEC------
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeecc------
Confidence 5 46689999999998866544 3332 22578999999999877665 5889999998876 22111100
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
+
T Consensus 365 -------------------------------------------------------------------------------g 365 (543)
T 1nir_A 365 -------------------------------------------------------------------------------G 365 (543)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC-CCeEEEEc--CCeEEEEECC
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT--GGKISLFNMM 833 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~~--dg~i~vwd~~ 833 (1101)
. ..|......+ ++|+ |.+++++. +++|.+||+.
T Consensus 366 ~-------------------------------------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 366 K-------------------------------------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp S-------------------------------------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred C-------------------------------------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 0 0022222222 3566 66667664 6889999998
Q ss_pred C-------ceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-------CCCcEEEEEeecceEE-Eee--------ccCCCC
Q 001319 834 T-------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-------EDSTIHIYNVRVDEVK-SKL--------KGHQKR 890 (1101)
Q Consensus 834 ~-------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-------~dg~v~iwd~~~~~~~-~~~--------~~h~~~ 890 (1101)
+ ++++.++.+|...+..++|+| ++++|++++ .+++|.|||+.+++.. ..+ ..+...
T Consensus 402 ~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 480 (543)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred CCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence 8 899999999998999999999 999999987 2779999999988766 443 456788
Q ss_pred eeEEEEcCCCCEEEEEe-----CCCcEEEEECCCCccccc
Q 001319 891 ITGLAFSTSLNILVSSG-----ADAQLCVWSIDTWEKRKS 925 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s-----~Dg~v~lwd~~~~~~~~~ 925 (1101)
+..++|+|||++|+++. .|+.|.|||..+++++..
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp EEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 99999999999888763 479999999999886543
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.7e-24 Score=246.25 Aligned_cols=283 Identities=9% Similarity=0.035 Sum_probs=219.1
Q ss_pred CcEEEEEEecCCceEEEEEe----ccC----cEEEEec--CCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~----~d~----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.. ..+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-----------------NSYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-----------------EEEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-----------------eEEEcChhHHHHHHH
Confidence 57888889999987888886 457 8999999 88876532 125667777777777
Q ss_pred cc--------------CCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 415 sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 75 26677776654 799999998543 33 5778999999999999999 78888877
Q ss_pred c---eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEE-EeccCCe--EEEEecCCCCeeeeccCCCCceEEEEEc
Q 001319 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1101)
Q Consensus 475 ~---~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 547 (1101)
+ .|++|| .+++. ..+..|.+.+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 66665 46778888999999988 567666 6666654 99999988665 4566677789999999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeec
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (1101)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998873 223447899999888753 3333333 67789999999999988754 589999999887643 33
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCC---cEEEEEcccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIG 661 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~ 661 (1101)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 22 2 688999999999999988876 7999998643
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.8e-23 Score=259.19 Aligned_cols=303 Identities=11% Similarity=0.059 Sum_probs=211.1
Q ss_pred CCcEEEEEEecCCceEEEEEec-cC-----cEEEEecCCCceeccccceeecc-----cccCccccccccccCCccEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWDM-----AACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~-d~-----~i~iwd~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
...|.+++|||||++| ++++. |+ .|.+||+.+++............ .......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 4579999999999965 66666 87 89999999887543211000000 0000000000000001358899
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCc--ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 233 4667888999999999999 677766 56999999 55555444
Q ss_pred eecCCcC----------------eEEEecccCCCccEEEEeccCC---------------------------------eE
Q 001319 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (1101)
Q Consensus 490 ~~~h~~~----------------v~~v~~~~~~~~~~l~s~~~d~---------------------------------~i 520 (1101)
...+... +..++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4434332 36788877 678888887765 78
Q ss_pred EEEecCC-CCeeeecc--CCCCceEEEEEccCCCEEEEeec-CCCCCceEEEEeCCCCeeEEEecccCCc---ceEEEEE
Q 001319 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGT-SKDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (1101)
Q Consensus 521 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~ 593 (1101)
.+||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8999887 66554332 35567899999 99999997764 2234678999999999888777665432 2356899
Q ss_pred eCCCCEEEEEeCCCcEEEEECC-CCeeeEeeccCCCCCCCCee-EEecCCCEEEEEEc-CC--cEEEEEccc
Q 001319 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTA-DN--GFKILANAI 660 (1101)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~g~~l~~~~~-d~--~i~iwd~~~ 660 (1101)
+|||+.+++++.||.+.+|.+. .+. ...+..+ ...+..+ .|+|+|+.|+..+. ++ .+++|++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899988888765 344 5555433 3356666 59999998765544 44 889998764
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3.1e-23 Score=257.06 Aligned_cols=244 Identities=10% Similarity=0.013 Sum_probs=184.8
Q ss_pred CccEEEEEEccCCCEEEEEEC-CC-----eEEEEeecCCcccccceeeeccc------------------------CcEE
Q 001319 406 PISVSRVAWSPDGNYVGVAFT-KH-----LIQLYSYAGSNDLRQHSQIDAHV------------------------GAVN 455 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~-d~-----~i~vwd~~~~~~~~~~~~l~~h~------------------------~~V~ 455 (1101)
...|.+++|||||++||+++. |+ .|++||+.+++... .+..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999987544 233332 2388
Q ss_pred EEEEecCCCceEEEEecCCceEEEEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee
Q 001319 456 DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1101)
Q Consensus 456 ~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 532 (1101)
+++|+|||+ +|++++. +.|++|| .++. .+..+..|...+..++|+| ||++|++++ ++.|++||+.+++...
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777765 9999999 4442 5667788888999999987 678888877 5699999998876654
Q ss_pred eccCCCCc----------------eEEEEEccCCCEEEEeecCCC-----------------------------CCceEE
Q 001319 533 DYDAPGHW----------------CTTMLYSADGSRLFSCGTSKD-----------------------------GDSFLV 567 (1101)
Q Consensus 533 ~~~~~~~~----------------v~~~~~s~d~~~l~~~~~~~~-----------------------------~~~~i~ 567 (1101)
....+... +.+++|||||++|++++.+.. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 44333322 478999999999998865221 112788
Q ss_pred EEeCCC-CeeEEEecc-cCCcceEEEEEeCCCCEEEEEeC-----CCcEEEEECCCCeeeEeeccCCC--CCCCCeeEEe
Q 001319 568 EWNESE-GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE-----DSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1101)
Q Consensus 568 iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 638 (1101)
+||+.+ ++......+ .....+..++| |||++|++++. +..|++||+.+++....+..+.. ...+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 876655433 22336788999 99999998653 57899999999887766654321 1135689999
Q ss_pred cCCCEEEEEEcCCcEEEEEcc
Q 001319 639 KEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
|||+++++++.++.+++|...
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999988888888888888654
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.2e-23 Score=260.23 Aligned_cols=287 Identities=10% Similarity=0.104 Sum_probs=209.3
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCc---cEEEEEEccCCCEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~v~~~~~spdg~~la 422 (1101)
.+.+++|||||+ ++++ +.||.|++||+.+++... ++.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 467899999999 4455 689999999999987643 2444543 499999999999999
Q ss_pred EEECC---------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec
Q 001319 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1101)
Q Consensus 423 s~~~d---------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~ 492 (1101)
+++.+ +.|.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++|| .+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7888999999875 32223345666699999999999 5776664 7999999 66766655554
Q ss_pred CCcCe------------------EEEecccCCCccEEEEeccCC----------------------------------eE
Q 001319 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (1101)
Q Consensus 493 h~~~v------------------~~v~~~~~~~~~~l~s~~~d~----------------------------------~i 520 (1101)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 7889977 678888887653 79
Q ss_pred EEEecCCCCeeeeccCC------CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce----EE
Q 001319 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (1101)
Q Consensus 521 ~~wd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v----~~ 590 (1101)
++||+.+++....+..+ ...+..++|||||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999888755555543 457899999999999877765444567899999999988776654433233 36
Q ss_pred EEEeCCCCEEEEE--eCCC------cEEEEE-CCCCee--eEeeccCCCCCCCCe-eEEecCCCEEEEEEcC---CcEEE
Q 001319 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (1101)
Q Consensus 591 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~g~~l~~~~~d---~~i~i 655 (1101)
++|+|||+.|+.. ..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999987764 4666 577777 444441 3333321 113443 6899999999877665 78999
Q ss_pred EEcccc
Q 001319 656 LANAIG 661 (1101)
Q Consensus 656 wd~~~~ 661 (1101)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 998643
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=5.5e-23 Score=233.69 Aligned_cols=280 Identities=10% Similarity=0.041 Sum_probs=209.5
Q ss_pred cccc--CCCCcceeE-eecCCCcEEEEEEecC--------------CceEEEEEec--c---CcEEEEecCCCceecccc
Q 001319 327 TWSL--DDLPRTVAV-SLHQGSTVISMDFHPS--------------HQTLLLVGSS--N---GEITLWELAMRDRLVSKP 384 (1101)
Q Consensus 327 ~~~~--~~~~~~~~~-~~~h~~~V~~v~fspd--------------g~~llasg~~--d---~~i~iwd~~~~~~~~~~~ 384 (1101)
+|++ ......... ..+|...+..+++++. +.+++.++.. + +.|++||++.+.. .
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~--- 172 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F--- 172 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E---
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E---
Confidence 7777 443322223 3458888999988861 4445444332 2 7999999975432 2
Q ss_pred ceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCC---eEEEEeecCCcccccceeeecccCcEEEEEEec
Q 001319 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1101)
Q Consensus 385 ~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 461 (1101)
.+.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+..|.+.+.+++|+|
T Consensus 173 ----------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 173 ----------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSP 232 (415)
T ss_dssp ----------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECT
T ss_pred ----------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----EeecCCCcccCEEEcC
Confidence 2667899999999999999999999875 9999999998754 3667888999999999
Q ss_pred CCCceEEEEecCCce--EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccC
Q 001319 462 PNKLLCVVTCGDDKL--IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDA 536 (1101)
Q Consensus 462 d~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~ 536 (1101)
||+. ++++++.|+. |++||..+.....+..|...+.+++|+| ||+.|++++. ++ .|.+||+.++.. ..+..
T Consensus 233 dg~~-la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~ 308 (415)
T 2hqs_A 233 DGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITW 308 (415)
T ss_dssp TSSE-EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCC-EECCC
T ss_pred CCCE-EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCCCCE-EEEec
Confidence 9994 3336766654 9999943344577888999999999987 6678887775 45 677778877653 34455
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC---cEEEEE
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWD 613 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd 613 (1101)
+...+.+++|+|||++|++++.+ +++..|++||+.+++.. .+..+. .+..++|+|+|++|++++.++ .|++||
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 66788999999999999988752 23578999999998874 444442 688899999999999988776 799999
Q ss_pred CCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 614 MDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
+.. .....+..+ ...|.+++|+|.-
T Consensus 385 ~~g-~~~~~l~~~--~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 385 TDG-RFKARLPAT--DGQVKFPAWSPYL 409 (415)
T ss_dssp TTS-CCEEECCCS--SSEEEEEEECCCC
T ss_pred CCC-CcEEEeeCC--CCCCcCCcccccc
Confidence 874 445555544 3479999999964
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=8.9e-22 Score=217.77 Aligned_cols=279 Identities=10% Similarity=0.053 Sum_probs=204.9
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC-CC
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~-d~ 428 (1101)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 356777777889999999999999999887542 22344556 9999999998777766 88
Q ss_pred eEEEEeecCCcc-cccceeeecccCcEEEEEEecCCCceEEEEecCC-c--eEEEEE-cCCceeEEeecCCcCeEEEecc
Q 001319 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-K--LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-~--~v~iwd-~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 4556666666699999999 56655555 3 899999 778877777654 456899998
Q ss_pred cCCCccEE-EEeccCCe-EEEEecCCCCeee----eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee-
Q 001319 504 HKENIQFI-FSTAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (1101)
Q Consensus 504 ~~~~~~~l-~s~~~d~~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~- 576 (1101)
| +|+++ ++...++. |.+|+++...... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 55544 44455578 9999988654432 22233456899999999998776653 478899999999888
Q ss_pred --EEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCee--eEeeccC----CC-CCCCCeeEEecCCCEEEE
Q 001319 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE----GG-LPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 577 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~g~~l~~ 646 (1101)
+..+... ..+..++|+|+|++++++. .++.|.+||..+++. +..+... .. ......++|+|+|++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7777654 2567799999999887765 578899999999887 3333222 11 111245899999998877
Q ss_pred EEc-CCcEEEEEcccc
Q 001319 647 TTA-DNGFKILANAIG 661 (1101)
Q Consensus 647 ~~~-d~~i~iwd~~~~ 661 (1101)
++. ++.|.+||+...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999998765
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=7.9e-22 Score=242.81 Aligned_cols=237 Identities=10% Similarity=-0.010 Sum_probs=167.0
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEeecCCccc-ccceeeeccc-----------------CcEEEEEEecCCCceEEEE
Q 001319 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVVT 470 (1101)
Q Consensus 409 v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~l~~h~-----------------~~V~~l~~s~d~~~~~l~s 470 (1101)
+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. ++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVLF 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEEE
Confidence 4557788 66777777888 8 9999999863 32 22332 56999999999 52 3444
Q ss_pred ecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-----CCeeeeccCCCCc-----
Q 001319 471 CGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW----- 540 (1101)
Q Consensus 471 ~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~----- 540 (1101)
. ++.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++.......+...
T Consensus 99 -~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 99 -T-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp -E-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred -E-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 3 5999999944444555666777888999987 66788874 689999999988 6655433333332
Q ss_pred ---------eEEEEEccCCCEEEEeecC-----------------------------CCCCceEEEEeCCCCeeEEEecc
Q 001319 541 ---------CTTMLYSADGSRLFSCGTS-----------------------------KDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 541 ---------v~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
+.+++|||||++|++++.+ ...+..|++||+.+++......+
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4789999999999988631 11357899999999887655433
Q ss_pred -cCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEECCCC-eeeEeeccC--CCCCCCCeeEEec--CCCEEEEEEcCC
Q 001319 583 -FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNV-NILTSTDAE--GGLPNLPRLRFSK--EGNLLAVTTADN 651 (1101)
Q Consensus 583 -~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~-~~~~~~~~~--~~~~~v~~v~~s~--~g~~l~~~~~d~ 651 (1101)
.....+..++|+|||++|++++.++ .|++||+.++ ......... .....+..++|+| ||++++++..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2233678899999999999987665 8999999998 433322211 1111346789999 999999888888
Q ss_pred cEEEEEcc
Q 001319 652 GFKILANA 659 (1101)
Q Consensus 652 ~i~iwd~~ 659 (1101)
.+++|.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=2.2e-21 Score=216.91 Aligned_cols=276 Identities=11% Similarity=0.091 Sum_probs=214.1
Q ss_pred cCCCcEEEEEEecCCceEEEEEec------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.....+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..++|+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~s 97 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATIN 97 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEEC
Confidence 345678999999999977555433 67899999998876542 11 23357789999
Q ss_pred cCCCEEEEEE-CCCeEEEEeecCCcccccceeeecccC---------cEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 416 PDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 416 pdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~---------~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
|||+++++++ .++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+|| .++
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 9999766654 57899999999988665 3333322 27899999999952222224688999999 788
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC----CCCceEEEEEccCCCEEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+.+..+..+...+.+++|++ +++++++++.++.|.+||..+++....+.. +...+..++|+|+|++++++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-- 250 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-- 250 (353)
T ss_dssp EEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--
T ss_pred ceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--
Confidence 88888875666688888877 667899999999999999998887765554 3446788999999998887764
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
.++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|+|
T Consensus 251 -~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~ 323 (353)
T 3vgz_A 251 -KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSA 323 (353)
T ss_dssp -SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECT
T ss_pred -CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcC
Confidence 368999999999998888775432 4589999999777665 78999999999999888876543 468999999
Q ss_pred CCCEEEEEEcCC
Q 001319 640 EGNLLAVTTADN 651 (1101)
Q Consensus 640 ~g~~l~~~~~d~ 651 (1101)
+|++|+++..++
T Consensus 324 dg~~l~v~~~~~ 335 (353)
T 3vgz_A 324 DGKTLYVSVKQK 335 (353)
T ss_dssp TSCEEEEEEECC
T ss_pred CCCEEEEEEccc
Confidence 999888777654
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=2.8e-22 Score=247.79 Aligned_cols=385 Identities=10% Similarity=0.060 Sum_probs=251.9
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCc--ceEEEEEeCCCCEEEEEeCC---------Cc
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGED---------SQ 608 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 608 (1101)
.+.+++|+|||+++++ + .++.|++||..+++....+.++... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3668899999997765 3 2779999999999988888766532 38889999999999998764 78
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeec
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1101)
+++||+.+++.........+...+..++|||||+.|+.++. +.|++|++.++. ..+........
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~-------------- 156 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEG-------------- 156 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTT--------------
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCC--------------
Confidence 89999998876322222223334889999999999999886 799999988762 21111110000
Q ss_pred cccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC-CeEEEEEec
Q 001319 689 ASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWH 767 (1101)
Q Consensus 689 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~v~~w~~~ 767 (1101)
.+ .....+. + .. ..-...+..++|+|||+.|+.++.+ +.+.+|++.
T Consensus 157 --~~-----------------------~~g~~~~-----v-~~--ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 157 --VI-----------------------YNGLSDW-----L-YE--EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp --TE-----------------------EEEECCH-----H-HH--HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred --ce-----------------------ECcccce-----e-EE--EEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 00 0000000 0 00 0011234789999999999888765 566777653
Q ss_pred CCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCC---
Q 001319 768 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP--- 844 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~--- 844 (1101)
.... .+...+..+.|+++|.. ..+..|++||+.+++....+..+
T Consensus 204 ~~~~------------------------------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 204 TYTG------------------------------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp CCSS------------------------------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred ccCC------------------------------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccC
Confidence 2100 02234678888888763 22457999999998876666654
Q ss_pred ---CCCeeEEEEecCCCCEEEEEeC----CCcEEEEEeecceEEEeecc-CCCCe----eEEEEcCCCCEEEE--EeCCC
Q 001319 845 ---PPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDEVKSKLKG-HQKRI----TGLAFSTSLNILVS--SGADA 910 (1101)
Q Consensus 845 ---~~~i~~l~~s~~~~~~la~g~~----dg~v~iwd~~~~~~~~~~~~-h~~~V----~~l~~s~d~~~l~s--~s~Dg 910 (1101)
...+..++||| |+++|++... +..|++||+.++++...+.. |.+.+ ..++|+|||+.|+. +..++
T Consensus 251 ~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 251 RMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 45689999999 8888877653 35799999999987766544 33444 38899999997775 45666
Q ss_pred ------cEEEEE-CCCCcc--ccceEEeecCCCCCCCcc-eEEEcCCCCEEEEE-eC---CeEEEEEcCCce--eeeEec
Q 001319 911 ------QLCVWS-IDTWEK--RKSVTIHIPAGKTPTGDT-RVQFNADQVRMLVV-HE---TQLAIYDASKME--RIRQWT 974 (1101)
Q Consensus 911 ------~v~lwd-~~~~~~--~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~-~d---~~i~v~d~~~~~--~~~~~~ 974 (1101)
.|.+|| ..+++. ... ...++ ..+. .++|+|||+.|+.. .+ +.+++|+++... ....+.
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~----l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 403 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQS----ITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS 403 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCB----SCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred CCcceeEEEEEeccCCCCccceeE----eecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence 466777 344330 111 11111 2333 36999999999864 33 789999986432 233333
Q ss_pred cCCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEee
Q 001319 975 PQDALSAPISCAVYSCNSQLVFATFC-DG--NIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 975 ~~~~h~~~v~~v~~s~dg~~l~s~~~-dg--~i~vwd~~~~~~~~~~ 1018 (1101)
....|...+..++|||||++|+.... .+ ...+++..++..+..+
T Consensus 404 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 404 CDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp TTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred ccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 21113567889999999998886543 22 3455676666554444
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.3e-21 Score=241.00 Aligned_cols=243 Identities=11% Similarity=0.066 Sum_probs=175.1
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCC-----ceEEEEeeCCCCC--------------eeEEEEecCCCCEEEEEe-
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPA--------------STFLAFHPQDNNIIAIGT- 865 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~~~~~la~g~- 865 (1101)
.+.+++|||||+.|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 35567888898888887788899999887 7766544433332 58999999 999999887
Q ss_pred --------------------------------CCCcEEEEEeecceEEEeec--cCCCCeeEEEEcCCCCEEEEEeCCC-
Q 001319 866 --------------------------------EDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNILVSSGADA- 910 (1101)
Q Consensus 866 --------------------------------~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg- 910 (1101)
.++.|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999988655442 5677899999999999999988776
Q ss_pred ----cEEEEECCCCccccceEEeecCCCCCCCcceEEEcC--CCCEEEEEe-CCeEEEEEcC-CceeeeEeccCCCCCCC
Q 001319 911 ----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA--DQVRMLVVH-ETQLAIYDAS-KMERIRQWTPQDALSAP 982 (1101)
Q Consensus 911 ----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~-d~~i~v~d~~-~~~~~~~~~~~~~h~~~ 982 (1101)
.|++||+.+++............ ....+..++|+| ||++++++. ++.++||.++ +++.+..+..+ ...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~-~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKH-YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSS-CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS---SSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCC-eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC---CeE
Confidence 89999999983322221111111 102346789999 999888764 7788888876 56666666554 667
Q ss_pred EEE-EEEccCCCEEEEEeC-CC----cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 983 ISC-AVYSCNSQLVFATFC-DG----NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 983 v~~-v~~s~dg~~l~s~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
+.. ++|+|||++|+.++. ++ .|..||+.+++. ..+. |... +..++|+| |+.+++.+..+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-----------~~~~--~~~~~~sp-dg~~l~~~~~~ 421 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-----------PESG--MHRTQLSP-DGSAIIDIFQS 421 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-----------CSSS--EEEEEECT-TSSEEEEEEEC
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-----------CCCc--eEEEEECC-CCCEEEEEecC
Confidence 776 899999998876554 44 677778777653 2222 3332 45799999 67777665443
Q ss_pred ----CeEEEEeCCCCC
Q 001319 1057 ----GSVKVMEPSESE 1068 (1101)
Q Consensus 1057 ----g~v~iWd~~~~~ 1068 (1101)
+.|.+||+.+++
T Consensus 422 ~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 422 PTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCSCEEEEEESSSCE
T ss_pred CCCCcEEEEEECCCCe
Confidence 569999998876
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.4e-21 Score=212.12 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=191.8
Q ss_pred EEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC-Ccc
Q 001319 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (1101)
Q Consensus 362 sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~-~~~ 440 (1101)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999998876543 455888999999999999999987 78999999999 765
Q ss_pred cccceeeecc-cCcEEEEEEecCCCceEEEEec--CCceEEEEE--cCCceeEEeecCCcCeEEEecccCCCccEEE-Ee
Q 001319 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (1101)
Q Consensus 441 ~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~~--~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~ 514 (1101)
.. ...+| ...|.+++|+||++ +|++++ .++.+.||. ..+.....+..+. .+..++|+| +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 54 23344 46889999999999 677766 445555555 4455555665444 488889987 556665 78
Q ss_pred ccCCeEEEEecCCC-CeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEEE
Q 001319 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (1101)
Q Consensus 515 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~ 592 (1101)
+.++.+++|+++.. .....+..+...+.+++|+|+|+++++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 88999999997543 334555666678999999999999887763 25567777765 4555566666554 678899
Q ss_pred EeCCCCEEEEEeCC-----------CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 593 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+|+.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988765 569999999886644443222334689999999999999887654
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.2e-20 Score=209.78 Aligned_cols=244 Identities=9% Similarity=0.127 Sum_probs=175.0
Q ss_pred CCCCEeEEEecCCCCeEEEEc-C-CeEEEEECC--Cce--EEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEe
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-G-GKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNV 875 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~ 875 (1101)
+...+.+++|+|+|+++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788899999999888876 4 899999997 554 344555444 789999999 888776665 4889999999
Q ss_pred ---ecceEEEeeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cccccce--EEeecCCCCCCCcceEEEcCCC
Q 001319 876 ---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDT-WEKRKSV--TIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 876 ---~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~-~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
.+.+.+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ ++..... ......+ ..+..++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG---AGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT---CCEEEEEECTTS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC---CCcceEEECCCC
Confidence 455556665544 4589999999999888877 899999999987 5433222 2222222 467789999999
Q ss_pred CEEEEE--eCCeEEEEEcCC--cee--eeEec---cCCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCC--CC--ce
Q 001319 949 VRMLVV--HETQLAIYDASK--MER--IRQWT---PQDALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDAD--TL--RL 1014 (1101)
Q Consensus 949 ~~l~~~--~d~~i~v~d~~~--~~~--~~~~~---~~~~h~~~v~~v~~s~dg~~l~s-~~~dg~i~vwd~~--~~--~~ 1014 (1101)
++++++ .++.+.+|++.. ++. ..... ........+..++|+|||++|++ +..++.|.+||+. ++ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 987764 478999999953 432 22222 11112356789999999998875 4579999999998 33 33
Q ss_pred eEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCeEEEEeCCC
Q 001319 1015 RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSE 1066 (1101)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~-~Dg~v~iWd~~~ 1066 (1101)
+..+.. +.. +..++|+| ++.+|++++ .|+.|.+|++..
T Consensus 270 ~~~~~~----------~~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 270 EGFQPT----------ETQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEC----------SSS---CCCEEECT-TSSEEEEECTTTCEEEEEEEET
T ss_pred eeeecC----------CCc---cceEEECC-CCCEEEEecCCCCeEEEEEEcC
Confidence 333331 111 45799999 688777776 689999996553
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.1e-20 Score=207.88 Aligned_cols=274 Identities=14% Similarity=0.168 Sum_probs=192.3
Q ss_pred CceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC-CeEEEE
Q 001319 356 HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLY 433 (1101)
Q Consensus 356 g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d-~~i~vw 433 (1101)
+++++++++.|+.|++|+++. ++.... ....|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345667768899999999963 322110 123366789999999999999999886 899999
Q ss_pred eec--CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc-CCc---eeEEeecCCcCeEEEecccCCC
Q 001319 434 SYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR---KLFNFEGHEAPVYSICPHHKEN 507 (1101)
Q Consensus 434 d~~--~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~-~~~---~~~~~~~h~~~v~~v~~~~~~~ 507 (1101)
++. +++. .....+..+. .+..++|+|+++. +++++..++.|.+||. ++. .+..+.. ...+.+++|++ +
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--D 139 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--T
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--C
Confidence 998 5542 2222344433 7899999999994 3445556899999994 332 3344443 34588889977 5
Q ss_pred ccEEEEec-cCCeEEEEecCC-CCeee----ecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC--Cee--
Q 001319 508 IQFIFSTA-IDGKIKAWLYDT-MGSRV----DYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI-- 576 (1101)
Q Consensus 508 ~~~l~s~~-~d~~i~~wd~~~-~~~~~----~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~-- 576 (1101)
++++++++ .++.|++||+.+ +.... ... .....+..++|+|+|+++++++. .++.|.+|++.. ++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 56777666 899999999987 43321 222 23447889999999998876653 378999999953 433
Q ss_pred EEEecccC-----CcceEEEEEeCCCCEEEEEe-CCCcEEEEECC--C--CeeeEeeccCCCCCCCCeeEEecCCCEEEE
Q 001319 577 KRTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--N--VNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 577 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
...+.... ...+..++|+|++++++++. .++.|.+||+. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 12355799999999888654 78999999998 2 34444444332 3789999999999988
Q ss_pred EE-cCCcEEEEEcc
Q 001319 647 TT-ADNGFKILANA 659 (1101)
Q Consensus 647 ~~-~d~~i~iwd~~ 659 (1101)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999665
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.3e-20 Score=206.39 Aligned_cols=276 Identities=10% Similarity=0.046 Sum_probs=203.2
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee-EEEecccCC
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRK 585 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~ 585 (1101)
.+..+++.+.++.|++||..+++....+..+...+ .++|+|+|+++++++. +++.|.+||..+++. ...+..+..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD---FCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES---TTCEEEEEECSSSSCEEEEEEECSS
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC---CCCeEEEEECCCCceeEEecccCCC
Confidence 34567888899999999999988877777666667 9999999998887764 467999999999987 666665544
Q ss_pred cceEEEEEeCCCCEEEEEeCCC---cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE-EcCCc-EEEEEccc
Q 001319 586 KSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNG-FKILANAI 660 (1101)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~-i~iwd~~~ 660 (1101)
....++|+|++++++++..++ .|.+||+.+++.+..+.... ...+++|+|+|++++++ ..++. +.+|++..
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 85 -SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp -CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred -CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 444489999999999655553 89999999999888776543 35899999999866555 55588 99999764
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccE
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKV 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 740 (1101)
......
T Consensus 161 ~g~~~~-------------------------------------------------------------------------- 166 (331)
T 3u4y_A 161 DGVLFD-------------------------------------------------------------------------- 166 (331)
T ss_dssp TCCEEE--------------------------------------------------------------------------
T ss_pred CCcEee--------------------------------------------------------------------------
Confidence 310000
Q ss_pred EEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEE
Q 001319 741 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 820 (1101)
Q Consensus 741 ~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 820 (1101)
.. .. .+ ........++|+|||++++
T Consensus 167 --~~----~~-~~------------------------------------------------~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 167 --TG----QE-FI------------------------------------------------SGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp --EE----EE-EE------------------------------------------------CSSSSEEEEEECTTSSEEE
T ss_pred --cC----Cc-cc------------------------------------------------cCCCCccceEECCCCCEEE
Confidence 00 00 00 0223367899999999665
Q ss_pred EEc--CCeEEEEECCCceE---EEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceE--EEeeccC----C
Q 001319 821 SAT--GGKISLFNMMTFKV---MTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEV--KSKLKGH----Q 888 (1101)
Q Consensus 821 ~~~--dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~--~~~~~~h----~ 888 (1101)
++. ++.|.+||+.+++. +..+.. ...+..++|+| ++++|++++ .++.|.+||+.+++. +..+..+ .
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence 543 78899999998887 777764 46678999999 888666554 578899999998877 3333322 2
Q ss_pred CC---eeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 001319 889 KR---ITGLAFSTSLNILVSSG-ADAQLCVWSIDTWE 921 (1101)
Q Consensus 889 ~~---V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~ 921 (1101)
.. +..++|+||+++|++++ .++.|.+||+....
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 22 35589999999886555 56799999998743
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=8.2e-20 Score=204.01 Aligned_cols=276 Identities=10% Similarity=0.076 Sum_probs=211.6
Q ss_pred ceEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEc
Q 001319 587 SNGVVQFDTTQNHFLAVGE-------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~ 658 (1101)
.+..++|+|+++++++++. ++.|.+||..+++.+..+.... .+..++|+|+|+.++++. .++.|.+||.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4677999999999988773 5689999999999888876543 368899999999666555 4789999998
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.++. ....+.. .
T Consensus 119 ~~~~-~~~~~~~------------------------------------------------------------~------- 130 (353)
T 3vgz_A 119 KTGE-VKGRLVL------------------------------------------------------------D------- 130 (353)
T ss_dssp TTCC-EEEEEES------------------------------------------------------------C-------
T ss_pred CCCe-eEEEEec------------------------------------------------------------C-------
Confidence 7652 1111000 0
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
.+ . .... .....+.+++|+|||++
T Consensus 131 ---------~~-------~-----------------------------~~~~-----------~~~~~~~~~~~s~dg~~ 154 (353)
T 3vgz_A 131 ---------DR-------K-----------------------------RTEE-----------VRPLQPRELVADDATNT 154 (353)
T ss_dssp ---------CC-------C-----------------------------CCSS-----------CCCCEEEEEEEETTTTE
T ss_pred ---------CC-------c-----------------------------cccc-----------cCCCCCceEEECCCCCE
Confidence 00 0 0000 01223577899999997
Q ss_pred EEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc----CCCCe
Q 001319 819 VMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQKRI 891 (1101)
Q Consensus 819 la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~----h~~~V 891 (1101)
++++. ++.|.+||..+++.+..+..+...+..++|+| ++++|++++.++.|.+||+.+++.+..+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 76664 67899999999999988886666789999999 899999999999999999999998877654 55678
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce
Q 001319 892 TGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME 968 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~ 968 (1101)
.+++|+|+++++++++. ++.|.+||+.+++....... .....++|+|++++++++. ++.|.+||..+++
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 89999999997776665 48999999999876544332 1235699999999777644 7999999999999
Q ss_pred eeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 969 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 969 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
.+..+.. ...+..++|+|||++|+++..++
T Consensus 306 ~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 306 VVKTFDT----PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEC----CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEec----CCCCCeEEEcCCCCEEEEEEccc
Confidence 9888765 45789999999999888777664
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=5.4e-20 Score=203.96 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=207.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE-EcCCcEEEEEccccccccccccCCCcccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.++++ ..++.|.+||+.++. ....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~------ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDL------ 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEEC------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEc------
Confidence 47888999999999999999988887654311136889999999876554 457899999987651 1110000
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
.
T Consensus 75 ---------------------------------------------------------------------~---------- 75 (337)
T 1pby_B 75 ---------------------------------------------------------------------S---------- 75 (337)
T ss_dssp ---------------------------------------------------------------------C----------
T ss_pred ---------------------------------------------------------------------C----------
Confidence 0
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-------------c
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-------------T 823 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-------------~ 823 (1101)
..+ .+...+.+++|+|||++++++ .
T Consensus 76 ~~~------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 76 TPE------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp BTT------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred Ccc------------------------------------------cccccccceEECCCCCEEEEEeccccccccccccc
Confidence 000 001123456777777776666 3
Q ss_pred CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEE
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL 903 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 903 (1101)
++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..++|+||++.+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 58899999999998887765 45688899999 88877777 689999999999988777654411 133789999877
Q ss_pred EEEeCCC------------------------cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE
Q 001319 904 VSSGADA------------------------QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959 (1101)
Q Consensus 904 ~s~s~Dg------------------------~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 959 (1101)
+..+.++ .|.+||+.+++.. ...... + ...+..++|+||+++++++ ++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~-~~~~~~~~~s~dg~~l~~~-~~~v 262 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---M-DVFYFSTAVNPAKTRAFGA-YNVL 262 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---C-SSCEEEEEECTTSSEEEEE-ESEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---C-CCceeeEEECCCCCEEEEe-CCeE
Confidence 6554332 4689999998764 222221 1 1456789999999999988 7999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+..
T Consensus 263 ~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 263 ESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999998877765 34578999999999999999999999999999998887764
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.8e-19 Score=200.64 Aligned_cols=249 Identities=11% Similarity=0.161 Sum_probs=172.1
Q ss_pred CCCCEeEEEecCCCCeEEEEc---CCeEEEEECCCce--EEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEee
Q 001319 803 LEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR 876 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~ 876 (1101)
+......++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567899999999444443 3789999998766 3445455677899999999 888888777 78999999996
Q ss_pred -cc--eEEEeecc---------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCccccceEEeecCCCCCCCcceEE
Q 001319 877 -VD--EVKSKLKG---------HQKRITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQ 943 (1101)
Q Consensus 877 -~~--~~~~~~~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 943 (1101)
++ +.+..+.. +...+.+++|+|||+.+++...++.|++|++. +++...........+ .....++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g---~~p~~~~ 193 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG---FGPRHLV 193 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT---CCEEEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC---CCCceEE
Confidence 22 33333321 12348899999999977777778899999998 444322222222222 4567899
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC--cee--eeEeccCCC---CCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCC-C
Q 001319 944 FNADQVRMLVVH--ETQLAIYDASK--MER--IRQWTPQDA---LSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADT-L 1012 (1101)
Q Consensus 944 ~s~d~~~l~~~~--d~~i~v~d~~~--~~~--~~~~~~~~~---h~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~-~ 1012 (1101)
|+|||++++++. ++.+.+|+++. ++. +..+..... ....+..++|+|||++|+ +...++.|.+|++.. +
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 999999877743 78999999874 443 222222110 014589999999999885 555689999999973 2
Q ss_pred --ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEEC-CCeEEEE--eCCCCC
Q 001319 1013 --RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-DGSVKVM--EPSESE 1068 (1101)
Q Consensus 1013 --~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~-Dg~v~iW--d~~~~~ 1068 (1101)
+.+..+.. + ...+..++|+| |+.+|++++. ++.|.+| |..+++
T Consensus 274 ~~~~~~~~~~----------~--~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 274 HLTLIQQIST----------E--GDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp CEEEEEEEEC----------S--SSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEEeEEEec----------C--CCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 33333321 1 22345899999 6887777765 5899999 555565
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=2e-19 Score=199.44 Aligned_cols=302 Identities=9% Similarity=0.059 Sum_probs=206.5
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCC--ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC--
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 584 (1101)
+++++++.++.|++||+.+++....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877766654332 4788999999988776653 36789999999999887776432
Q ss_pred --CcceEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 585 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
...+..++|+|+|+++++++ .++.|.+||+.+++.+..+.... .+.+++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11355689999999999886 57999999999998887776532 46889999999988888 6
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
+.|.+||+.++. ....+..... .....++|+++.+......... +
T Consensus 154 ~~i~~~d~~~~~-~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~--------------~-------------- 198 (337)
T 1pby_B 154 RDLHVMDPEAGT-LVEDKPIQSW------EAETYAQPDVLAVWNQHESSGV--------------M-------------- 198 (337)
T ss_dssp SSEEEEETTTTE-EEEEECSTTT------TTTTBCCCBCCCCCCCCTTTTE--------------E--------------
T ss_pred CeEEEEECCCCc-Eeeeeecccc------CCCceeCCCccEEeeeccCCCc--------------e--------------
Confidence 899999998773 3222221110 0112556666554322111100 0
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
..+.......++..... .....+.+|| ..++........ .+...+.++
T Consensus 199 -------~~~~~~~~~~~~~~~~~-~~~~~v~~~d----------------------~~~~~~~~~~~~--~~~~~~~~~ 246 (337)
T 1pby_B 199 -------ATPFYTARKDIDPADPT-AYRTGLLTMD----------------------LETGEMAMREVR--IMDVFYFST 246 (337)
T ss_dssp -------EEEEEEEBTTSCTTSGG-GEEEEEEEEE----------------------TTTCCEEEEEEE--ECSSCEEEE
T ss_pred -------eeeeecccccccccccc-ccccceEEEe----------------------CCCCCceEeecC--CCCCceeeE
Confidence 00000000000000000 0111344444 444443222221 245678899
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 888 (1101)
+|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|++||+.+++.+..+..+.
T Consensus 247 ~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 247 AVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 999999999888 79999999999998887764 35678999999 88888888999999999999999888776543
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.2e-20 Score=221.36 Aligned_cols=271 Identities=11% Similarity=0.054 Sum_probs=195.7
Q ss_pred CCcEEEEEEecCCceEEEEEec-cCcEEEEecCCCceeccccceeecccccCccccccccccCC-ccEEEEEEccCCCEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYV 421 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~-d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~l 421 (1101)
..+|++++|||||++| |+++. ||++.||++++++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~l-a~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKL-LVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTEE-EEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCeE-EEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 3479999999999965 55555 9999999997665432 33444 68999999999 777
Q ss_pred EEEEC---CCeEEEEeecC--CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 422 GVAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 422 as~~~---d~~i~vwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++.+ +|| .+++...... +..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~-~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELAR-LPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEE-ESS
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeec-CCC
Confidence 77765 45567766654 22112 122222 3446799999987566666666555 999 6665544333 333
Q ss_pred CeEEEecccCCCccEEEEeccC----CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 496 PVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||++|+++.. ++...|++||+
T Consensus 153 --~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 7778876 77899988877 78999999877655 55667778899999999999995443 23348999999
Q ss_pred CCCeeEEEecccCCcceEEEE--------EeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.+++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++..... ...+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CCEE
Confidence 999887 6666544 444455 9999988888999999999999 6655421 1357889999 9999
Q ss_pred EEEEEcCCc---EEEEEcc
Q 001319 644 LAVTTADNG---FKILANA 659 (1101)
Q Consensus 644 l~~~~~d~~---i~iwd~~ 659 (1101)
+++++.+.+ +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 988887744 5555543
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=5.9e-20 Score=199.35 Aligned_cols=244 Identities=13% Similarity=0.092 Sum_probs=182.3
Q ss_pred CcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccC-CccEEE
Q 001319 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSR 411 (1101)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~v~~ 411 (1101)
.........|...|.+++|||||+++ ++++ ++.|.+||+.+ ++... +..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~l-~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKYL-LLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSEE-EEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCCEE-EEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence 34455666789999999999999954 6654 88999999988 76543 13334 478899
Q ss_pred EEEccCCCEEEEEE--CCCeEEEEee--cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc
Q 001319 412 VAWSPDGNYVGVAF--TKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (1101)
Q Consensus 412 ~~~spdg~~las~~--~d~~i~vwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~ 485 (1101)
++|+|||++|++++ .++.+.||.+ .+++ .. .+..+. .+..++|+||++. ++++++.|+.+++|+ ..+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3345555555 4443 22 333333 4899999999994 344788899999999 5566
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEec-cCCeEEEEecC-CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC--
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD-- 561 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~-- 561 (1101)
....+..+...+.+++|++ +++.|+.++ .++.+++|+++ .......+..+...+.+++|+|+|++|++++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 6677888888999999987 556666555 58999999987 45556666667778999999999999998875321
Q ss_pred -----CCceEEEEeCCCCeeEEE--ecccCCcceEEEEEeCCCCEEEEEeCCC
Q 001319 562 -----GDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1101)
Q Consensus 562 -----~~~~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1101)
++..|++||+.+++.... +.++.. .+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 236799999998866433 335544 677799999999999887543
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=228.25 Aligned_cols=277 Identities=11% Similarity=0.092 Sum_probs=194.0
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCc---cEEEEEEccCCCEEEEEE
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~v~~~~~spdg~~las~~ 425 (1101)
.++|+|||+ +++++ .|+.|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 55554 69999999999987643 1333333 489999999999999987
Q ss_pred C---------CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe-ecCC
Q 001319 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (1101)
Q Consensus 426 ~---------d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-~~h~ 494 (1101)
. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998763101 12 25688999999999 566665 78999999 666654322 2333
Q ss_pred cCe-----------------EEEecccCCCccEEEEeccCC----------------------------------eEEEE
Q 001319 495 APV-----------------YSICPHHKENIQFIFSTAIDG----------------------------------KIKAW 523 (1101)
Q Consensus 495 ~~v-----------------~~v~~~~~~~~~~l~s~~~d~----------------------------------~i~~w 523 (1101)
..| .+++|+| ||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 222 4788877 778999887652 78899
Q ss_pred ecCCCCee--ee------ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEe----CCCCeeEEEe----cccCCcc
Q 001319 524 LYDTMGSR--VD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN----ESEGTIKRTY----AGFRKKS 587 (1101)
Q Consensus 524 d~~~~~~~--~~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 587 (1101)
|+.++... .. +..+...+..++||||++.+++.....+....|++|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99877642 11 2346667899999999877776543233345799999 8888766555 24433 4
Q ss_pred eE-----EEEEeCCCCEEEE--EeCCC--cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC-----CcE
Q 001319 588 NG-----VVQFDTTQNHFLA--VGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGF 653 (1101)
Q Consensus 588 v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i 653 (1101)
+. .++|+|||+.++. ...+| .|++||+.+++. ..+... ...+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999997655 33455 577778877663 333322 2246677777 88888777765 778
Q ss_pred EEEEccc
Q 001319 654 KILANAI 660 (1101)
Q Consensus 654 ~iwd~~~ 660 (1101)
++|.+..
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8888753
No 152
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.7e-18 Score=197.14 Aligned_cols=318 Identities=14% Similarity=0.099 Sum_probs=202.2
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
...+..+++++++..+++++.+| +++|+........... .....+...... .. ..+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~----~~---~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQG----LL---VPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCC----EE---ECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcc----cc---ccCCCcccEEEEcCCC
Confidence 44678899999999999988887 8888754221100000 000000000000 00 1256789999999999
Q ss_pred CeEE----EEc-CCeEEEEECCCc--------e---EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 817 SYVM----SAT-GGKISLFNMMTF--------K---VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 817 ~~la----~~~-dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
++|+ +++ |+.|++||+.++ + ....+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 566 789999998765 2 24556678999999999994489999999999999999999987
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC-CCCCCcceEEEcCCCCEEEEEe--CC
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVH--ET 957 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--d~ 957 (1101)
+....+|...|.+++|+|+|++|++|+.||+|++||+. ++.......+.... .....+.++.|++++.++++.. ++
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 77777899999999999999999999999999999998 43322221111100 1113788999999999887743 32
Q ss_pred ------eEEEEEcCCce-----eeeEeccC----CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC--ce-eEee
Q 001319 958 ------QLAIYDASKME-----RIRQWTPQ----DALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTL--RL-RCYI 1018 (1101)
Q Consensus 958 ------~i~v~d~~~~~-----~~~~~~~~----~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~--~~-~~~~ 1018 (1101)
.+++|++.+.+ ....+... .....+-..+.+-+|.+++++++ ..+.|.|...... .. ....
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~ 343 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLL 343 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEE
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEec
Confidence 38999997642 11221111 01122333344447777776655 4555666664331 11 1111
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecC--C------------CCEEEEEECCCeEEEEeCCC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPL--E------------PNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~--d------------~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.........+-.......++++++.-. + --.|..-+.||.+..|.+-.
T Consensus 344 ~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 344 EDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111111111111234455666655321 1 13678888999999999866
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=9.3e-19 Score=199.25 Aligned_cols=259 Identities=12% Similarity=0.084 Sum_probs=174.9
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE-
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG- 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la- 422 (1101)
...+..+++++++. ++++|+.++ |+||+........... .+.. ............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 557787787 9998864321110000 0000 000000011223567899999999999999
Q ss_pred ---EEECCCeEEEEeecCC--------cccccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 423 ---VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 423 ---s~~~d~~i~vwd~~~~--------~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999875 222233456789999999999998 55 899999999999999 77777777
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecCC--
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK-- 560 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~-- 560 (1101)
..+|...|.+++|++ +|++|++|+.||+|++||.+ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999988 56899999999999999988 4444433322 22789999999998887655321
Q ss_pred -CCCceEEEEeCCCCe-----eEEEec-------ccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEEC
Q 001319 561 -DGDSFLVEWNESEGT-----IKRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM 614 (1101)
Q Consensus 561 -~~~~~i~iwd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 614 (1101)
+....+++|++...+ ....+. +... ....+..-++.+.+++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999987642 112221 1111 122233446777776655 4444555553
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.6e-18 Score=192.76 Aligned_cols=268 Identities=14% Similarity=0.110 Sum_probs=185.6
Q ss_pred ccccCCCCccee--EeecCCCcEEEEEEecCCceEEEEEec--cCcEEEEecCCCceeccccceeecccccCcccccccc
Q 001319 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1101)
Q Consensus 327 ~~~~~~~~~~~~--~~~~h~~~V~~v~fspdg~~llasg~~--d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 402 (1101)
+|.++....... ....+...+..++|||||+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 666665544443 3455778899999999998 7666543 78999999977653220 113
Q ss_pred ccCCccEEEEEEccCCCEEEEEE-CCCeEEEEeecCCcccccceeeec---------ccCcEEEEEEecCCCceEEEEec
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~---------h~~~V~~l~~s~d~~~~~l~s~~ 472 (1101)
..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 44677889999999999999888 689999999964322332222221 123488999999999 788888
Q ss_pred CCceEEEEE-c-CCcee--EEeecCC-cCeEEEecccCCCccEEEE-eccCCeEEEEecCC--CCee--eeccCCC----
Q 001319 473 DDKLIKVWE-L-SGRKL--FNFEGHE-APVYSICPHHKENIQFIFS-TAIDGKIKAWLYDT--MGSR--VDYDAPG---- 538 (1101)
Q Consensus 473 ~d~~v~iwd-~-~~~~~--~~~~~h~-~~v~~v~~~~~~~~~~l~s-~~~d~~i~~wd~~~--~~~~--~~~~~~~---- 538 (1101)
.++.|.+|| . +++.. ..+..+. ..+..++|+| ||+++++ ...++.|.+|+++. +... ..+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 4 45433 2223222 3577899977 6675544 56789999999875 3221 1111111
Q ss_pred --CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC---CeeEEEecccCCcceEEEEEeCCCCEEEEEeC-CCcEEEE
Q 001319 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (1101)
Q Consensus 539 --~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw 612 (1101)
..+..++|+|||++|+++.. +++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 35889999999998866543 478899999872 245555555433 5778999999999988875 5899999
Q ss_pred --ECCCCeee
Q 001319 613 --DMDNVNIL 620 (1101)
Q Consensus 613 --d~~~~~~~ 620 (1101)
|..++++.
T Consensus 314 ~~d~~tg~l~ 323 (347)
T 3hfq_A 314 ARDLTSGKLS 323 (347)
T ss_dssp EECTTTCCEE
T ss_pred EEeCCCCeEE
Confidence 55566554
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=6.3e-19 Score=217.26 Aligned_cols=331 Identities=9% Similarity=0.032 Sum_probs=215.5
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccC---cEEEEEEecCCCceEEEEecC---------CceEE
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGD---------DKLIK 478 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~---~V~~l~~s~d~~~~~l~s~~~---------d~~v~ 478 (1101)
+++|+|||+++++ +.|++|++||+.+++... .+.+|.. .|.+++|||||+ .|++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEE---EEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEE
Confidence 7899999976655 469999999999988654 3444433 489999999999 5666654 78999
Q ss_pred EEE-cCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCce-------------
Q 001319 479 VWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWC------------- 541 (1101)
Q Consensus 479 iwd-~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v------------- 541 (1101)
+|| .+++.+ ..+ ...+..++|+| ||+.|+.+. ++.|++|++.++...... .++...+
T Consensus 94 ~~d~~~g~~~~~~~l---~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL---PRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEETTTTEECCSSCC---CSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred EEECCCCccccceec---CcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 999 555542 333 35688899987 667888775 789999999887665432 2221112
Q ss_pred ----EEEEEccCCCEEEEeecCCC------------------------------CCceEEEEeCCCCeeE--EE------
Q 001319 542 ----TTMLYSADGSRLFSCGTSKD------------------------------GDSFLVEWNESEGTIK--RT------ 579 (1101)
Q Consensus 542 ----~~~~~s~d~~~l~~~~~~~~------------------------------~~~~i~iwd~~~~~~~--~~------ 579 (1101)
.+++|||||++|++++.+.. ....|++||+.+++.. ..
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 48999999999999875321 1237899999988753 11
Q ss_pred ecccCCcceEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCeeeEee----ccCCCCCCCC-----eeEEecCCC
Q 001319 580 YAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWD----MDNVNILTST----DAEGGLPNLP-----RLRFSKEGN 642 (1101)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~~~v~-----~v~~s~~g~ 642 (1101)
+.++.. .+..++|+||++.+++.... ..|++|| ..+++....+ ..+ ...+. .+.|+|||+
T Consensus 248 ~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 248 IASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp HHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSS
T ss_pred CCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCC
Confidence 223333 67889999998766664322 3488999 8777765544 222 22455 789999999
Q ss_pred EEEE--EEcCCc--EEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 643 LLAV--TTADNG--FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 643 ~l~~--~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
.++. ...++. |.+|++.++. ...+.
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt------------------------------------------------- 353 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVEN--AIQIT------------------------------------------------- 353 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTT--CEECS-------------------------------------------------
T ss_pred eEEEEEEccCCceEEEEEECCCCc--eEecc-------------------------------------------------
Confidence 6655 334554 5555554431 11111
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC-----CeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-----GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
.+...+..+.++ +++.++..+.+ +..++|.+....... +. ..
T Consensus 354 ----------------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~--~~--------------~~ 400 (719)
T 1z68_A 354 ----------------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP--SK--------------KC 400 (719)
T ss_dssp ----------------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC--CE--------------EE
T ss_pred ----------------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC--Cc--------------ee
Confidence 123345556666 77777776654 888999875311000 00 00
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCeEEEEc--C--CeEEEEECCCceEEEEee
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSYVMSAT--G--GKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d--g~i~vwd~~~~~~~~~~~ 842 (1101)
+...+. ++...+..+.|+||+++++... . ..+.+||+.+++....+.
T Consensus 401 l~~~~~--~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 401 VTCHLR--KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSTTTT--TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ccCccC--CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 000011 1445677899999999887543 2 468999998888765554
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=7e-18 Score=207.52 Aligned_cols=381 Identities=9% Similarity=0.010 Sum_probs=241.2
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc--e--EEEEEeCCCCEEEEEeCC---------C
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS--N--GVVQFDTTQNHFLAVGED---------S 607 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--v--~~~~~~~~~~~l~~~~~d---------g 607 (1101)
..++.|+|||++++++ ++.|++||+.+++....+.++.... + ..++|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 5588999999888874 6789999999999888888775422 2 337899999999998875 6
Q ss_pred cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeee
Q 001319 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1101)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1101)
.+++||+.+++... +..+ ...+..++|||||+.||.+. ++.|++|++.++....-...+....
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67899999998654 3222 33688999999999999885 6899999987763211111110000
Q ss_pred ccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC-CeEEEEEe
Q 001319 688 SASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKW 766 (1101)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~v~~w~~ 766 (1101)
+..+...-.. . ..-......++|||||+.|+....| +.+.+|++
T Consensus 156 ----~~~g~~~~v~-----------------------------~--ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 156 ----IYNGITDWVY-----------------------------E--EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp ----EEESBCCHHH-----------------------------H--HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred ----eecCcccccc-----------------------------c--chhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 0000000000 0 0000222457899999999888765 44888876
Q ss_pred cCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCC---c---eEEEE
Q 001319 767 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT---F---KVMTT 840 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~---~---~~~~~ 840 (1101)
...... . .+...+..+.+.+.|... ...+|++||+.+ + +....
T Consensus 201 ~~~~~~-------------------~---------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 201 SFYSDE-------------------S---------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp EECCST-------------------T---------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSCCCEEEE
T ss_pred EeecCC-------------------C---------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCcceEEEe
Confidence 421100 0 133456677777766431 123699999998 7 33332
Q ss_pred ee-----CCCCCeeEEEEecCCCCEEEEEeC----CCcEEEEEeecce----EEE--ee--ccCCCCee-----EEEEcC
Q 001319 841 FM-----SPPPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDE----VKS--KL--KGHQKRIT-----GLAFST 898 (1101)
Q Consensus 841 ~~-----~~~~~i~~l~~s~~~~~~la~g~~----dg~v~iwd~~~~~----~~~--~~--~~h~~~V~-----~l~~s~ 898 (1101)
.. +|...+..++|+| |+++++.... +..|++||+.+++ +.. .+ .+|...|. .++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 22 2667799999999 8887665543 3379999999987 332 22 45665554 789999
Q ss_pred CCCEEE-EEeC-C--CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-C-------CeEEEEEcCC
Q 001319 899 SLNILV-SSGA-D--AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E-------TQLAIYDASK 966 (1101)
Q Consensus 899 d~~~l~-s~s~-D--g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d-------~~i~v~d~~~ 966 (1101)
||+.|+ ..+. + ..|.+||+.+++.. ++..+. ..+..+. .+|++.|+... . ..|...++..
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~--~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT--WEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS--SCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC--EEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999877 6653 3 35888898876532 222222 2344333 24477666533 2 2455556655
Q ss_pred ceeeeEeccC-CCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeEeeC
Q 001319 967 MERIRQWTPQ-DALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 967 ~~~~~~~~~~-~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~ 1019 (1101)
+.....+... ......+..+.|||||++++..... ..+.+++..+++....+.
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 5443344321 1124678899999999987754433 468889988887655543
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=4.7e-18 Score=209.05 Aligned_cols=274 Identities=12% Similarity=0.099 Sum_probs=182.8
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC-----ccEEEEEEccCCCE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-----ISVSRVAWSPDGNY 420 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-----~~v~~~~~spdg~~ 420 (1101)
...+++|+|||+ +++++ |+.|++||+.+++... ++.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCCE
Confidence 466899999997 55765 8999999999987643 133333 23345899999999
Q ss_pred EEEEECC---------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE-E
Q 001319 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-N 489 (1101)
Q Consensus 421 las~~~d---------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~-~ 489 (1101)
||+++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++|| .++...+ +
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 566799999987543 567888999999999999 466654 78999999 5655432 1
Q ss_pred eecCCcCe-----------------EEEecccCCCccEEEEeccCCe-EEEEecCCCCeeeeccCCCCceEEEEEccCCC
Q 001319 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1101)
Q Consensus 490 ~~~h~~~v-----------------~~v~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 551 (1101)
..++...+ ..+.|+| ||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333222 3477877 7788888876655 8888764221110 1233466777777764
Q ss_pred EEEEeecCCCCCceEEEEeCCC---Ce--eEEEecc-----cCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESE---GT--IKRTYAG-----FRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNV 617 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 617 (1101)
. +....|++||+.+ ++ ....+.. .+...+..++|+|||+.++... .+..|++||+.++
T Consensus 224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 3 1244799999998 73 2223332 1233678899999998766643 2347999999988
Q ss_pred e----ee--EeeccCCCCCCC-----CeeEEecCCCEEE-EEEc-CC--cEEEEEcccc
Q 001319 618 N----IL--TSTDAEGGLPNL-----PRLRFSKEGNLLA-VTTA-DN--GFKILANAIG 661 (1101)
Q Consensus 618 ~----~~--~~~~~~~~~~~v-----~~v~~s~~g~~l~-~~~~-d~--~i~iwd~~~~ 661 (1101)
+ +. ..+....+...| ..++|+|||+.++ ..+. +| .|++|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 22 111001112233 3789999999887 6653 33 5777776654
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=2.7e-18 Score=194.48 Aligned_cols=297 Identities=11% Similarity=-0.007 Sum_probs=195.8
Q ss_pred eeEeecCCCcEEE-----EEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCCccE
Q 001319 337 VAVSLHQGSTVIS-----MDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1101)
Q Consensus 337 ~~~~~~h~~~V~~-----v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v 409 (1101)
..+...|...+.. .+|||||++|+.++..++ .|.+||+.+++... +..++...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCc
Confidence 3344446666666 899999997655444367 48888988876543 244555566
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEE--EecCCCceEEEE-----------------
Q 001319 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVT----------------- 470 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~~~l~s----------------- 470 (1101)
..++|||||++|+.++.++.|++||+.+++... .+..+...+.... +++|++ .++.
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 678899999999999999999999999987554 3344555554444 489998 4542
Q ss_pred -----ecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCeeeeccCCC
Q 001319 471 -----CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 471 -----~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
.+.+..|.+|| .+++ ...+..+...+..++|+|. ||+.|+.+..+ ..|.++|..............
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 23457899999 5554 5555567777899999761 34677666543 367777776554433333222
Q ss_pred -CceEEEEEccCCCEEEEeecCCC-CCceEEEEeCCCCeeEE--EecccCC--cceEEEEEeCCCCEEEEE---------
Q 001319 539 -HWCTTMLYSADGSRLFSCGTSKD-GDSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV--------- 603 (1101)
Q Consensus 539 -~~v~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~--------- 603 (1101)
..+..++|+|||+.|+..+.... .+..|++||+.+++... .+.++.. ......+|+|||+.|+..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 35788999999998876654221 12359999999987533 3332100 001113699999988864
Q ss_pred eCCCcEEEEECCCCeeeEeeccCCCC--------CCCCeeEEecCCCEEEEEEc-CCcEEEEEcc
Q 001319 604 GEDSQIKFWDMDNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1101)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~ 659 (1101)
..+..|++||+.+++........... ..+..++|+|||+.|+.++. ++...+|.+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45678999999988764443322210 03678999999998887764 6766676554
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=9.4e-19 Score=209.62 Aligned_cols=235 Identities=13% Similarity=0.164 Sum_probs=177.4
Q ss_pred CccEEEEEEccCCCEEEEEEC-CCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEecC---CceEEEE
Q 001319 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~~---d~~v~iw 480 (1101)
..+|.+++|||||++||+++. ||+++||++++++..+ +..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 558999999999999999887 9999999998776433 44555 68999999999 5 6776654 5556676
Q ss_pred E--c--CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 481 d--~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
. . .+... .+.... .+...+|++++++..+++++.++. .+||+.+++.......+. .+++|||||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 55554 443322 344667888766555666555554 499998876554443332 789999999999988
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC--cEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 764333478999999988865 5555554 678899999999999888888 8999999998877 44433 335667
Q ss_pred eE--------EecCCCEEEEEEcCCcEEEEEc
Q 001319 635 LR--------FSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 635 v~--------~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77 9999999999999999999998
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.4e-18 Score=191.70 Aligned_cols=242 Identities=13% Similarity=0.101 Sum_probs=184.0
Q ss_pred EEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEE-EEEeCCCcEEEEEeecceEEEeec
Q 001319 809 CIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~l-a~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.++++++++++++++ ++.|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888887 8999999999999988887543 2578999999 77755 555678999999999998887765
Q ss_pred cCC------CCeeEEEEcCCCCEEEEEeCC------------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 886 GHQ------KRITGLAFSTSLNILVSSGAD------------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 886 ~h~------~~V~~l~~s~d~~~l~s~s~D------------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++......... . +..+.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~--~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--M--PRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--C--CSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--C--CCcccceeECCC
Confidence 332 237899999999999998865 899999999865443222211 1 135788999999
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeeEeccCCC-------------------------------------------------
Q 001319 948 QVRMLVVHETQLAIYDASKMERIRQWTPQDA------------------------------------------------- 978 (1101)
Q Consensus 948 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------------------------------- 978 (1101)
|+ ++++ ++.|.+||..+++.+..+.....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5554 44599999999888776654310
Q ss_pred ----------------CCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEE
Q 001319 979 ----------------LSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1041 (1101)
Q Consensus 979 ----------------h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~ 1041 (1101)
+...+..++|+| ||++++++ ++.|.+||+.+++.+..+.. .+ .+.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----------~~--~~~~~~ 301 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-----------DH--TYYCVA 301 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-----------SS--CCCEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-----------CC--CccceE
Confidence 012456778889 99999988 88999999999998777652 22 234799
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCCCcccc
Q 001319 1042 AHPLEPNQFAIGLTDGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1042 ~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~ 1073 (1101)
|+| ++.+|++++.++.|.+||+.+++....+
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6777777888999999999998843333
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=7.8e-17 Score=180.22 Aligned_cols=312 Identities=9% Similarity=0.082 Sum_probs=195.9
Q ss_pred cCCCEEEEeecCCCCCceEEEEeC--CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC----CcEEEEECCC--Cee
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDN--VNI 619 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~ 619 (1101)
+...++++++.....++.|++|++ .+++.......+ ......++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 344456666554444667888755 566554433322 3356679999999999998875 7999998765 443
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCC
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 698 (1101)
...............+++ ++++|++++ .++.|.+|++..... +.....
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~---------------------------- 138 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-LLPASD---------------------------- 138 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-BCSCSE----------------------------
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-Ccccce----------------------------
Confidence 222221111123455666 888888776 578899999864311 100000
Q ss_pred CCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCee
Q 001319 699 ANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 778 (1101)
Q Consensus 699 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 778 (1101)
.+.+ .+ .+
T Consensus 139 -------------------------------------------~~~~--~g--------~~------------------- 146 (361)
T 3scy_A 139 -------------------------------------------VIEF--KG--------SG------------------- 146 (361)
T ss_dssp -------------------------------------------EEEC--CC--------CC-------------------
T ss_pred -------------------------------------------eEEc--cC--------CC-------------------
Confidence 0000 00 00
Q ss_pred eeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCce-------E------EEEeeC
Q 001319 779 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFK-------V------MTTFMS 843 (1101)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~-------~------~~~~~~ 843 (1101)
. .....+...+.+++|+|||++++++. ++.|.+|++.... . ......
T Consensus 147 -------------~-----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (361)
T 3scy_A 147 -------------P-----DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA 208 (361)
T ss_dssp -------------S-----CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred -------------C-----CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence 0 00001334577899999999766654 6889999876433 1 111223
Q ss_pred CCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceE--EEee---ccCCCCeeEEEEcCCCCEEEEEeCC--CcEEEE
Q 001319 844 PPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEV--KSKL---KGHQKRITGLAFSTSLNILVSSGAD--AQLCVW 915 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~--~~~~---~~h~~~V~~l~~s~d~~~l~s~s~D--g~v~lw 915 (1101)
+...+..++|+| ++++|++++ .++.|.+|++.+++. +..+ ..+...+.+++|+|||++|+++..+ +.|.+|
T Consensus 209 ~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 209 PGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp TTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 455688999999 888777776 689999999998754 2222 3344557899999999998766654 899999
Q ss_pred ECC--CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEc--CCceeeeEeccCCCCCCCEEEEEEc
Q 001319 916 SID--TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDA--SKMERIRQWTPQDALSAPISCAVYS 989 (1101)
Q Consensus 916 d~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~--~~~~~~~~~~~~~~h~~~v~~v~~s 989 (1101)
++. +++......+.. + ..+..++|+|||++|+++. ++.|.+|++ .+++....... .+...+.|+.|.
T Consensus 288 ~~~~~~g~~~~~~~~~~--g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT--G---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD--IKVDKPVCLKFV 360 (361)
T ss_dssp EECTTTCCEEEEEEEEC--S---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC--EECSSEEEEEEE
T ss_pred EEcCCCCcEEEeeEecC--C---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee--eeCCCCeEEEEc
Confidence 996 444322222221 2 4678999999999988865 688999655 46665443222 125578899886
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=3.4e-17 Score=183.14 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=183.4
Q ss_pred EEEEEe----ccCcEEEEecCC--CceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC----C
Q 001319 359 LLLVGS----SNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (1101)
Q Consensus 359 llasg~----~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d----~ 428 (1101)
.+.+|+ .++.|.+|+++. ++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 345563 456899998753 443220 012 66778889999999999999886 7
Q ss_pred eEEEEeecCC-cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe------ec--------
Q 001319 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF------EG-------- 492 (1101)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~------~~-------- 492 (1101)
.|.+|++... ..+........+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999863 223333344445667778888 7774 445555789999999 433322111 11
Q ss_pred CCcCeEEEecccCCCccEEEE-eccCCeEEEEecCCCCe-------------eeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 493 HEAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGS-------------RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~-------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+...+.+++|+| +|+++++ ...++.|++|+++.... ..........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 122357789977 6675554 44589999999876542 1222334456789999999998887763
Q ss_pred CCCCCceEEEEeCCCCeeE--EEecccC--CcceEEEEEeCCCCEEEEEeC--CCcEEEEECC--CCe--eeEeeccCCC
Q 001319 559 SKDGDSFLVEWNESEGTIK--RTYAGFR--KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMD--NVN--ILTSTDAEGG 628 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 628 (1101)
.++.|.+|++.+++.. ..+.... ......++|+|+|++|+++.. ++.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 4788999999877652 3332221 123568999999999977665 4899999985 444 3334433 2
Q ss_pred CCCCCeeEEecCCCEEEEEE-cCCcEEEEEcc
Q 001319 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~ 659 (1101)
..+..++|+|+|++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999999888 57899997654
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=7.8e-18 Score=187.54 Aligned_cols=293 Identities=8% Similarity=-0.017 Sum_probs=193.6
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR- 584 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~- 584 (1101)
++.++++++.++.|++||..+++....+..+. ..+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccc
Confidence 66789999999999999999887776665443 25789999999997766543 47889999999999887776432
Q ss_pred ----CcceEEEEEeCCCCEEEEEeCC------------CcEEEEECCCCeee---EeeccCCCCCCCCeeEEecCCCEEE
Q 001319 585 ----KKSNGVVQFDTTQNHFLAVGED------------SQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 585 ----~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
...+..++|+|+|+++++++.+ +.|.+||+.+++.. .....+ ..+.+++|+|+|+ ++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-LY 162 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-EE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-EE
Confidence 2236678999999999998865 89999999885433 333322 2578999999999 65
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+++ +.|.+||..++. ....+....... + ..+.++...+ |.......
T Consensus 163 ~~~--~~i~~~d~~~~~-~~~~~~~~~~~~---~---~~~~~~~~~~------------------------~~~~~~~~- 208 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTGK-YTVALPLRNWNR---K---GYSAPDVLYF------------------------WPHQSPRH- 208 (349)
T ss_dssp EES--SSEEEECTTTCC-EEEEECSTTCCC---T---TBCCCBCCCC------------------------CCCCCTTC-
T ss_pred Ecc--CcEEEEeCCCCc-eeccccccccCC---c---cccCccceee------------------------ecCCCcce-
Confidence 554 459999988763 222221110000 0 0000000000 00000000
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccE-----------EEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccce
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGL-----------LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l-----------~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
.......+++++++... .....++.+++|++.
T Consensus 209 ----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 251 (349)
T 1jmx_B 209 ----------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------------- 251 (349)
T ss_dssp ----------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------------
T ss_pred ----------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------------
Confidence 00012234444433211 112223344444321
Q ss_pred eeccCCCCCCCCEeEEEecC-CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
.....+.+++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|++|
T Consensus 252 -------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 252 -------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp -------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred -------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEE
Confidence 1445678999999 99999888 88999999999998887764 34578999999 88888888889999999
Q ss_pred EeecceEEEeeccC
Q 001319 874 NVRVDEVKSKLKGH 887 (1101)
Q Consensus 874 d~~~~~~~~~~~~h 887 (1101)
|+.+++.+..+...
T Consensus 322 d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 322 NPDTLEKVKNIKLP 335 (349)
T ss_dssp ETTTTEEEEEEECS
T ss_pred eccccceeeeeecC
Confidence 99999988877644
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=2.1e-17 Score=184.83 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=171.3
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECC-CceEEEEeeCC-CCCeeEEEEecCCCCE--EEEEe-------------CC
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMM-TFKVMTTFMSP-PPASTFLAFHPQDNNI--IAIGT-------------ED 867 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~~-~~~i~~l~~s~~~~~~--la~g~-------------~d 867 (1101)
..+..++|+|||++|++++.+.|.+|++. +++........ .+.+.+++|+| ++++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999888874499999997 77765443211 13466799999 8884 55553 68
Q ss_pred CcEEEEEee-cceEEEeec----cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECC-CCccccceEEeecCCCCCCCcc
Q 001319 868 STIHIYNVR-VDEVKSKLK----GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDT 940 (1101)
Q Consensus 868 g~v~iwd~~-~~~~~~~~~----~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~ 940 (1101)
|++.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... ....+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 466544433 25567999999999998887654 6789999998 66543222222111 015688
Q ss_pred eEEEcCCCCEEEEEe--CCeEEEEEcC--Cceeee---EeccC----CCCCC------CEEEEE-EccCCCEEEEEeCCC
Q 001319 941 RVQFNADQVRMLVVH--ETQLAIYDAS--KMERIR---QWTPQ----DALSA------PISCAV-YSCNSQLVFATFCDG 1002 (1101)
Q Consensus 941 ~~~~s~d~~~l~~~~--d~~i~v~d~~--~~~~~~---~~~~~----~~h~~------~v~~v~-~s~dg~~l~s~~~dg 1002 (1101)
.++|+|||++++++. ++.|.+|+.+ +++... .+... .+|.. .+..++ |||||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988864 6899999875 555421 22211 11122 588999 999999988766432
Q ss_pred ------cEEEEeCC-CCceeEe---eCCCCcCCCcccCCCCccceEEEEEecC--CCCEEEEEEC-CCeEEEEeCCCC
Q 001319 1003 ------NIGVFDAD-TLRLRCY---IAPSTYLSPSVLNGSQTVYPLVVAAHPL--EPNQFAIGLT-DGSVKVMEPSES 1067 (1101)
Q Consensus 1003 ------~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~l~~~p~--d~~~l~s~~~-Dg~v~iWd~~~~ 1067 (1101)
.|.+|++. ++++... +.. +.. .+..++|+|. |+++|++++. +++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~----------~~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPT----------PTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEEC----------SSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeec----------CCC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 6665431 211 111 1235788994 5788888876 489999998765
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=3.7e-17 Score=182.77 Aligned_cols=246 Identities=9% Similarity=0.048 Sum_probs=171.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeec-CCcccccceeeecccCcEEEEEEecCCCceEEEEec------------
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------------ 472 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~------------ 472 (1101)
...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467899999999999999888 89999997 77643311 11111 235668999999953355553
Q ss_pred -CCceEEEEE-c-CCceeEEee----cCCcCeEEEecccCCCccEEEEec-cCCeEEEEecC-CCCeee--ecc--CCCC
Q 001319 473 -DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRV--DYD--APGH 539 (1101)
Q Consensus 473 -~d~~v~iwd-~-~~~~~~~~~----~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~--~~~--~~~~ 539 (1101)
.++++.+|+ . +|+....+. .+...+.+++|+| ||++++++. .++.|++|+++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 689999999 3 566554443 2456789999987 667777665 46899999998 555432 222 2355
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCC--CCeeEE---EecccC----C-c-------ceEEEE-EeCCCCEEE
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKR---TYAGFR----K-K-------SNGVVQ-FDTTQNHFL 601 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~----~-~-------~v~~~~-~~~~~~~l~ 601 (1101)
.+..++|+|||++++++.. .++.|.+|+.. +++... .+.... + . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 6899999999999988764 36788888754 565432 222111 1 1 367799 999999988
Q ss_pred EEeCC-C-----cEEEEECC-CCeeeEe---eccCCCCCCCCeeEEec---CCCEEEEEEcC-CcEEEEEcccc
Q 001319 602 AVGED-S-----QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (1101)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~g~~l~~~~~d-~~i~iwd~~~~ 661 (1101)
++..+ + .|.+|++. +++.... ..... ..+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76532 2 89999996 5665432 22222 2467899999 89999999864 89999998654
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=8.4e-18 Score=190.42 Aligned_cols=254 Identities=11% Similarity=0.012 Sum_probs=173.9
Q ss_pred cccCCccEEE-----EEEccCCCEEEEEEC-CC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC
Q 001319 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1101)
Q Consensus 402 ~~~h~~~v~~-----~~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~ 473 (1101)
+..|...... .+|||||++||.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655555 899999999999987 66 48888998887554 3345655666788999999 6888888
Q ss_pred CceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEe----------------------ccCCeEEEEecCCCCe
Q 001319 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----------------------AIDGKIKAWLYDTMGS 530 (1101)
Q Consensus 474 d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----------------------~~d~~i~~wd~~~~~~ 530 (1101)
++.|++|| .+++....+..+...+....+..++++..++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 777776666666665655555335577777642 2447899999988765
Q ss_pred eeeccCCCCceEEEEEcc-CCCEEEEeecCCC--CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC-C
Q 001319 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-D 606 (1101)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 606 (1101)
... ..+...+..++|+| ||+.|+.+..... ....|+++|...++............+...+|+|||+.|+..+. +
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 443 33455689999999 9999988764221 14478888887665443333222224667899999998866442 2
Q ss_pred ----CcEEEEECCCCeeeEeeccCCC--C-CCCCeeEEecCCCEEEEE---------EcCCcEEEEEcccc
Q 001319 607 ----SQIKFWDMDNVNILTSTDAEGG--L-PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIG 661 (1101)
Q Consensus 607 ----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~g~~l~~~---------~~d~~i~iwd~~~~ 661 (1101)
+.|++||+.+++.......... . .....+.|+|||+.|+.. ..+..|++||+.++
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2399999998875433322210 0 013445899999988864 44568999998765
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=4.9e-16 Score=172.40 Aligned_cols=312 Identities=9% Similarity=0.093 Sum_probs=208.4
Q ss_pred CccEEEEec------cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec------CCCCCceEEEEeCCCC
Q 001319 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEG 574 (1101)
Q Consensus 507 ~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~ 574 (1101)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445565543 4789999999888877666655444 8999999999998753 1123567999999999
Q ss_pred eeEEEecccC-----CcceEEEEEeCCCCEEEEEeC--CCcEEEEECCCCeeeEe-eccCCCCCCCCeeEEecCC-CEEE
Q 001319 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (1101)
Q Consensus 575 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~g-~~l~ 645 (1101)
+.+.++.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876431 123556899999999999863 68999999999998887 65432 1235667765 6778
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+.+.||.+.+|+............. ...+.+.
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~-----------~~~~~~~------------------------------------- 199 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRS-----------KQMFSVK------------------------------------- 199 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEEC-----------CCCSCTT-------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeeccc-----------cceEcCC-------------------------------------
Confidence 8889999999987542121100000 0000000
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
... ..+.+++++..++..+.++.+.++++....... ...|............ ...
T Consensus 200 -----------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~----~p~ 254 (361)
T 2oiz_A 200 -----------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDKAKNW----VPG 254 (361)
T ss_dssp -----------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHHHTTC----EEC
T ss_pred -----------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccccccc----ccC
Confidence 000 112234555556666667788888764321100 0001111100000000 001
Q ss_pred CEeEEEecCCCCeEEEEc------------CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 806 AVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
....++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++++. ++|.+|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEE
Confidence 112368999988766542 2479999999999999998876 99999999 8889988887 999999
Q ss_pred Eeecc--eEEEeeccCCCCeeEEEEcCCCC
Q 001319 874 NVRVD--EVKSKLKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 874 d~~~~--~~~~~~~~h~~~V~~l~~s~d~~ 901 (1101)
|..++ +.+..+..+......++++|+|+
T Consensus 331 D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999 99999877878889999999986
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.8e-16 Score=175.85 Aligned_cols=218 Identities=13% Similarity=0.103 Sum_probs=156.9
Q ss_pred EeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEE-eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-ceEE
Q 001319 807 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVK 881 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-~~~~ 881 (1101)
...++++|||++|+++. ++.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.+.+|++.. ++..
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 45689999999988874 46899999999998887 6532 2233567774557888899999999999875 5544
Q ss_pred E------eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCC
Q 001319 882 S------KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 882 ~------~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~ 949 (1101)
. .+..+..++ .+.+++++..++..+.++.|.++|+.............. .+..+.....++|+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 1 222333332 345577888888888899999999976543221111110 011112334589999988
Q ss_pred EEEEEe------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--cee
Q 001319 950 RMLVVH------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL--RLR 1015 (1101)
Q Consensus 950 ~l~~~~------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~--~~~ 1015 (1101)
.+.+.. .+.|.+||+.+++.+..+..+ . +..++|+|||++|++++. +.|.|||..++ +.+
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 888742 248999999999999998874 3 899999999999998887 99999999999 888
Q ss_pred EeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 1016 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
.++.. + ...+..++++|+
T Consensus 341 ~~i~~----------~--G~~P~~~~~~p~ 358 (361)
T 2oiz_A 341 RTIEG----------A--AEASLQVQFHPV 358 (361)
T ss_dssp EEETT----------S--CSSEEEEEECCC
T ss_pred EEecc----------C--CCCcEEEEecCC
Confidence 88642 1 234567899994
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=6.2e-17 Score=183.83 Aligned_cols=282 Identities=10% Similarity=-0.022 Sum_probs=183.2
Q ss_pred EEEEEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 347 VISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+.+++|||||++++++...++ .|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 778899999997655544433 68888988776432 112222223347899999999999
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEE-------------------EEEecCCCceEEEEe-----cCCceEEEE
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~-------------------l~~s~d~~~~~l~s~-----~~d~~v~iw 480 (1101)
+.++.|++||+.+++... ....+...... ++|+|+++. ++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999886543 22233332222 356777774 3332 467789999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCeeeeccCC-CCceEEEEEccCCCE
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~ 552 (1101)
| .+++.. .+..+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..++|+|||++
T Consensus 174 d~~~g~~~-~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELE-VIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEE-eeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 555544 44456677889999773 34555554433 36888888665433333321 235788999999998
Q ss_pred EEEeecCC-CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC-CCCEEEEEe----------------CCCcEEEEEC
Q 001319 553 LFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (1101)
Q Consensus 553 l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 614 (1101)
|+..+... ...+.|++||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 88775421 11245999999988765443221 123 88999 999888754 3478999999
Q ss_pred CCCeeeEeeccCCCC--------CCCCeeEEecCCCEEEEEEc-CCcEEEEEc
Q 001319 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~ 658 (1101)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 887754332221100 02467899999999887775 455555544
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=9.4e-17 Score=182.35 Aligned_cols=319 Identities=8% Similarity=-0.015 Sum_probs=205.7
Q ss_pred EEEeCCCCeeEEEecccCCc----ceEEEEEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 567 VEWNESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
..+|..++..+..+..+... .+..++|+|+|++|+..... ..|++||+.+++......... .....+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC
Confidence 34578888877777654331 14567899999998876543 478899998887655433222 1234488999
Q ss_pred CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEE
Q 001319 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEI 719 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 719 (1101)
||+.|+.++.++.|++|++.++.. ......
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~------------------------------------------------- 120 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEE-QVIYTV------------------------------------------------- 120 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCE-EEEEEC-------------------------------------------------
T ss_pred CCCEEEEEEcCCcEEEEECCCCCc-EEEEec-------------------------------------------------
Confidence 999999999999999999876521 110000
Q ss_pred EeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccC
Q 001319 720 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1101)
+.. ++++|+.++....++...+|.
T Consensus 121 ----------------~~~------~~~~g~~l~~~~~~~~~~~~~---------------------------------- 144 (396)
T 3c5m_A 121 ----------------DEE------WKGYGTWVANSDCTKLVGIEI---------------------------------- 144 (396)
T ss_dssp ----------------CTT------EEEEEEEEECTTSSEEEEEEE----------------------------------
T ss_pred ----------------ccc------cCCCCCEEEeccCCccccccc----------------------------------
Confidence 000 445555555554444333332
Q ss_pred CCCCCCCEeEEEecCCCCeEEEE------cCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC------
Q 001319 800 GVNLEEAVPCIALSKNDSYVMSA------TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED------ 867 (1101)
Q Consensus 800 ~~~~~~~v~~~~~s~dg~~la~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------ 867 (1101)
..++++||++.++.. .+..|++||+.+++..... .+...+..+.|+|.++..|+..+.+
T Consensus 145 --------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 145 --------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp --------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred --------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCC
Confidence 113467888877654 2457999999988776555 3566789999999446656655543
Q ss_pred CcEEEEEeecceEEEeeccC-CCCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccccceEEeecCCCCCCCcce
Q 001319 868 STIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 941 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1101)
..|++|++.+++........ ...+..++|+|||++|+.++.+ +.|++||+.+++.... .... ...
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l---~~~~-----~~~- 286 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV---MVMP-----PCS- 286 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE---EECC-----SEE-
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe---eeCC-----CCC-
Confidence 36888888766543333321 2358889999999988877554 4499999988764321 1111 122
Q ss_pred EEEcC-CCCEEEEEe-----------------CCeEEEEEcCCceeeeEeccCCCCCC----------CEEEEEEccCCC
Q 001319 942 VQFNA-DQVRMLVVH-----------------ETQLAIYDASKMERIRQWTPQDALSA----------PISCAVYSCNSQ 993 (1101)
Q Consensus 942 ~~~s~-d~~~l~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~h~~----------~v~~v~~s~dg~ 993 (1101)
+.|+| ||++++++. +..|.+||+.+++... +..+. .. .+..++|+|||+
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~--~~~~~~~~~~~~~~~~~~~s~dg~ 363 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHS--TSWDVLDGDRQITHPHPSFTPNDD 363 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECC--CCCCCBTTBSSTTCCCCEECTTSS
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCC--CccccccccccCCCCCceEccCCC
Confidence 89999 999888742 3689999998877543 33221 11 256688999999
Q ss_pred EEEEEeC-CCcEEEE--eCCCCce
Q 001319 994 LVFATFC-DGNIGVF--DADTLRL 1014 (1101)
Q Consensus 994 ~l~s~~~-dg~i~vw--d~~~~~~ 1014 (1101)
+|+.++. ++...+| ++.++..
T Consensus 364 ~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 364 GVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEEEECTTSSCEEEEEECCTTCC
T ss_pred eEEEEecCCCCceEEEEEEccccc
Confidence 8887664 5554554 5555443
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=8.9e-16 Score=187.18 Aligned_cols=250 Identities=10% Similarity=-0.021 Sum_probs=177.0
Q ss_pred cccccCCccEEEEEEccCCCEEEEE--ECCCeEEEEeecCCcccccceeeecccCcEE---------EEEEe--cCCCce
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN---------DLAFA--YPNKLL 466 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~--~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~d~~~~ 466 (1101)
..+.+|...|..++|++++.+++.. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3477899999999999887777777 558899999975444333 4556766666 66676 999941
Q ss_pred EEEEe-cCCceEEEEEcC--C-ceeEEeec-----CCcCeEEEecccCCCccEEEEeccC----------CeEEEEecCC
Q 001319 467 CVVTC-GDDKLIKVWELS--G-RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAID----------GKIKAWLYDT 527 (1101)
Q Consensus 467 ~l~s~-~~d~~v~iwd~~--~-~~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~~~d----------~~i~~wd~~~ 527 (1101)
|+.+ ..+..|.+|+.. + .....+.. |...+..++|+| ||+.|++++.+ ..|++||+.+
T Consensus 94 -la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 -LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp -EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred -EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 4433 345667777755 3 55566666 667788999987 67889888877 5899999987
Q ss_pred ------CCeeeecc-CCCCceEEEEEccCCCEEEEeecCCC----CCceEEEEeCC-CC---eeEEEecccCCcceEEEE
Q 001319 528 ------MGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNES-EG---TIKRTYAGFRKKSNGVVQ 592 (1101)
Q Consensus 528 ------~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~v~~~~ 592 (1101)
+.. ..+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..++
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 443 3444 45567888999999999998775321 13589999999 57 44444443333 688899
Q ss_pred EeCCCCEEEEEeCCC--cEEEEECCCCeeeEeeccCCCC------CCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 593 FDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 593 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
|+|||+.++++..++ .|++||..+++.......+... ..+..++|+|+++++++++. +.+++|.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777788 6777777677655444332211 01467888888888888888 88888854
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=7.5e-14 Score=162.34 Aligned_cols=274 Identities=13% Similarity=0.080 Sum_probs=195.6
Q ss_pred ceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeec
Q 001319 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1101)
Q Consensus 357 ~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~ 436 (1101)
++++++...++.|.++|..+++.+.. +. ....+..++|||||+++++++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 34677888899999999999887652 11 23356799999999999999999999999996
Q ss_pred --CCcccccceeeecccCcEEEEEEe----cCCCceEEEEecCCceEEEEE-cCCceeEEeecC----------Cc-CeE
Q 001319 437 --GSNDLRQHSQIDAHVGAVNDLAFA----YPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH----------EA-PVY 498 (1101)
Q Consensus 437 --~~~~~~~~~~l~~h~~~V~~l~~s----~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h----------~~-~v~ 498 (1101)
+++.+. ++... .....++|+ |||++ ++++...+++|.|+| .+.+.+..+... .. .+.
T Consensus 227 ~~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 227 MKEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SSSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 665554 34332 246799999 69995 455566679999999 888888766421 12 567
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeee-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.+..++.. ..+++....+|.|.++|+........ ..........+.|+|+|++++++.. +++.|.++|..+++.+
T Consensus 302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEE
T ss_pred EEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEE
Confidence 77776643 35677777889999999876543221 1123345678899999999988764 4778999999999988
Q ss_pred EEecc-cCCc-ceEEE-EEeCCCCEEEEEe--CCCcEEEEECCC-------CeeeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 578 RTYAG-FRKK-SNGVV-QFDTTQNHFLAVG--EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 578 ~~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
..+.. .... .-... .++|++..+++.+ .++.|.++|..+ .+.+..+...+. .-..+..+|+++++.
T Consensus 378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEE
T ss_pred EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEE
Confidence 77764 2211 10112 2688765555443 568999999987 567777765432 225578899999999
Q ss_pred EEEc-------CCcEEEEEcccc
Q 001319 646 VTTA-------DNGFKILANAIG 661 (1101)
Q Consensus 646 ~~~~-------d~~i~iwd~~~~ 661 (1101)
+... .+.|.++|+.+.
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCcccCceEEEEECCcc
Confidence 8763 358888887654
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=1.3e-13 Score=160.20 Aligned_cols=331 Identities=14% Similarity=0.064 Sum_probs=226.1
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC--CCeeEEEecc
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRTYAG 582 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~ 582 (1101)
++.+.++++...+++|.++|..+.+....+... ..+..+.|+|||+++++++. ++.|.+||+. +++.+.++..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEec
Confidence 334567778888999999999998887766543 34679999999999998874 7899999996 8888877765
Q ss_pred cCCcceEEEEEe----CCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCC---------CCCCCeeEEecCCCEEEEE-
Q 001319 583 FRKKSNGVVQFD----TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVT- 647 (1101)
Q Consensus 583 ~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~g~~l~~~- 647 (1101)
.. ....++|+ |+|++++++. .++.|.++|..+.+.+..+...+. ...+..+..++++..+++.
T Consensus 239 G~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 GS--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp CS--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CC--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 33 35679999 6999998876 569999999999988887754321 1133445555544333322
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
..+|.|.++|..+..
T Consensus 317 ~~~g~v~~vd~~~~~----------------------------------------------------------------- 331 (567)
T 1qks_A 317 KETGKILLVDYTDLN----------------------------------------------------------------- 331 (567)
T ss_dssp TTTTEEEEEETTCSS-----------------------------------------------------------------
T ss_pred cCCCeEEEEecCCCc-----------------------------------------------------------------
Confidence 233445544433210
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
.+++..+ ......
T Consensus 332 --------------------------------~~~v~~i-----------------------------------~~~~~~ 344 (567)
T 1qks_A 332 --------------------------------NLKTTEI-----------------------------------SAERFL 344 (567)
T ss_dssp --------------------------------EEEEEEE-----------------------------------ECCSSE
T ss_pred --------------------------------cceeeee-----------------------------------eccccc
Confidence 0000000 022335
Q ss_pred eEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeC-----CCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeec--
Q 001319 808 PCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRV-- 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~-- 877 (1101)
..+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+++++. .+++|.++|..+
T Consensus 345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 5788999999887765 68899999999998877654 32222222 5773355555554 468999999987
Q ss_pred -----ceEEEeeccCCCCeeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCcc---ccc-eEEeec----CCCCCC
Q 001319 878 -----DEVKSKLKGHQKRITGLAFSTSLNILVSSGA-------DAQLCVWSIDTWEK---RKS-VTIHIP----AGKTPT 937 (1101)
Q Consensus 878 -----~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-------Dg~v~lwd~~~~~~---~~~-~~~~~~----~~~~~~ 937 (1101)
.+.+.++......-..+..+|++++|.+... ..+|.++|+.+.+. ... ..+... .+....
T Consensus 424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP 503 (567)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence 5677777765444456889999999888663 35899999988621 111 122110 011125
Q ss_pred CcceEEEcCCCCEEEEE------eCCeEEEEEcCCceeeeEecc
Q 001319 938 GDTRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWTP 975 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~ 975 (1101)
.+..+.|+++|+.+.++ .++.|.|+|..+++.+..+..
T Consensus 504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 68899999999998875 268999999999999888774
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.7e-15 Score=184.72 Aligned_cols=287 Identities=11% Similarity=0.023 Sum_probs=188.3
Q ss_pred eecCCCcEEEEEEecCCceEEEEE--eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEE-------
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS------- 410 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg--~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~------- 410 (1101)
..+|...|..++|++++- +++++ +.++...||....+.... .+..|...+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 345888999999998864 34555 457889999964433222 1334444444
Q ss_pred --EEEEc--cCCCE-EEEEEC-CCeEEEEeec--C-Ccccccceeeec-----ccCcEEEEEEecCCCceEEEEecCC--
Q 001319 411 --RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD-- 474 (1101)
Q Consensus 411 --~~~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~~~l~s~~~d-- 474 (1101)
..+|+ |||++ ||.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 55565 99999 887654 4566667665 3 43 33 3444 677899999999999 67766666
Q ss_pred --------ceEEEEEcCC------ceeEEee-cCCcCeEEEecccCCCccEEEEeccC--------CeEEEEecC-CC--
Q 001319 475 --------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM-- 528 (1101)
Q Consensus 475 --------~~v~iwd~~~------~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~-- 528 (1101)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|++||++ ++
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred CCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999544 4556666 6667788888877 77888877755 379999998 45
Q ss_pred -CeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCc-------ceEEEEEeCCCCEE
Q 001319 529 -GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHF 600 (1101)
Q Consensus 529 -~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l 600 (1101)
........+...+..++|+|||++++++.. ++...|++||..+++.......+... .+..++|+|++..+
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEE
Confidence 333333334567899999999996555542 23347888888777765544433221 04568899999999
Q ss_pred EEEeCCCcEEEE--ECCCCeeeEeeccCCCCCCCCeeEEecCCCEE--EEEEcCCc--EEEEEcccc
Q 001319 601 LAVGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL--AVTTADNG--FKILANAIG 661 (1101)
Q Consensus 601 ~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l--~~~~~d~~--i~iwd~~~~ 661 (1101)
+++.. +.+++| |..+++ +..+..+. ..+..+ +++++..+ ++++.+.. |.+||+.++
T Consensus 309 ~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 309 VVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 99988 999999 665565 45554432 245555 14555443 33444444 445555454
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=8.9e-15 Score=160.52 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=182.4
Q ss_pred CcEEEEEEecCCceEEEEEecc------------------------CcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d------------------------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+.|.+|+++|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5799999999998 66776666 3689999887776431
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc-ccccceee---------ecccCcEEEEEEec-CCCceEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI---------DAHVGAVNDLAFAY-PNKLLCVV 469 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~l---------~~h~~~V~~l~~s~-d~~~~~l~ 469 (1101)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 122345678999999999988888889999999986542 222 22 24455789999999 676 677
Q ss_pred Eec-CCceEEEEEcCCceeEEeecC----------CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--C
Q 001319 470 TCG-DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--A 536 (1101)
Q Consensus 470 s~~-~d~~v~iwd~~~~~~~~~~~h----------~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~ 536 (1101)
+.+ .++.|++||.+|+.+..+... ......+++.++ .+.++++...++.|++|+.++++....+. .
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 775 689999999888888777432 234788999763 15788888889999999998777766653 3
Q ss_pred CCCceEEEEEccCCCEEEEeec---CCCCCceEEEEeCCCCeeEEEec---ccCCcceEEEEEeCCCCEEEEEeCCCcEE
Q 001319 537 PGHWCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 610 (1101)
....+..++++| +..+...+. .......|.+||..+++.+..+. ++.. ....++++|+|..+++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEE
Confidence 455788999999 444433321 01235589999999999998884 3333 578899999997777778899999
Q ss_pred EEECCC
Q 001319 611 FWDMDN 616 (1101)
Q Consensus 611 iwd~~~ 616 (1101)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=4.5e-14 Score=151.81 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=177.4
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE-ccCCCEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~-spdg~~l 421 (1101)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+.... . .....+|...+.++++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~-----~--------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFG-----E--------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEEC-----C--------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEec-----c--------cCCCcccccCceEEEEEcCCCeEE
Confidence 445799999999997 66777788999999987 44332100 0 0001235567899999 4777776
Q ss_pred EEEEC-CCeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee--cCCcCe
Q 001319 422 GVAFT-KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPV 497 (1101)
Q Consensus 422 as~~~-d~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~h~~~v 497 (1101)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 66643 88999999 5555443 232 3445789999999998 7888888899999997788777764 345568
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCCCc-eEEEEeCCCC
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEG 574 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~-~i~iwd~~~~ 574 (1101)
.++++.+ +|.++++...++.|++||.. ++....+... ...+..++++++|+++++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8999876 56777887889999999974 3444444433 256889999999988877653 54 8999995 56
Q ss_pred eeEEEecccCC-cceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 575 TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 575 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
+.+..+..+.. ..+..++++|+|+.+++ +.++.|++|+....
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66666655433 23667999999976665 67999999997653
No 177
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.68 E-value=1.4e-10 Score=143.71 Aligned_cols=585 Identities=11% Similarity=0.066 Sum_probs=338.5
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|++|.-.++|. |. .|+.+| +..||-. . |+.+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~---~-----f~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGY---A-----FTVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSS---C-----EEEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCC---c-----eEEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 35899999999996 43 455665 4556632 1 111111000 00 001245799999999887554
Q ss_pred EECCCeEEEEeecCCcccccceeeecccC----cEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec-C-CcC
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVG----AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP 496 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~----~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~-h-~~~ 496 (1101)
|+.+| +..||..+++... +..... .|.++...++|. +.+ ++. +.+..|| .+++. ..+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~-~~~~~~~~~~~ 173 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKF-IDDSFSTAMHK 173 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEE-ECSSSCHHHHT
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEE-EeccCCCCCCc
Confidence 55565 8999987764321 211111 288999988887 333 443 5588999 44433 22211 1 112
Q ss_pred -eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 497 -VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 497 -v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
|.++.... ++. |..++.++.|..|+..+....... ......|.++...++|.+.+... .+-|.+||..++
T Consensus 174 ~i~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 174 TIASTLYRQ--GDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTK 245 (795)
T ss_dssp CCEEEEEEE--TTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTT
T ss_pred ceEEEEECC--CCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCC
Confidence 77776643 444 555666656888987665543321 12345688888888887666542 334888998887
Q ss_pred eeEEEeccc------CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----CCCCCCCeeEEecCCCE
Q 001319 575 TIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 575 ~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~g~~ 643 (1101)
+........ ....+.++...++|... .|+.+ -|.+||..++......... -....|.++...++|.+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 655433221 12358888888877654 45555 5899998877654432211 11236788888888864
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCC
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSG 723 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 723 (1101)
.+|+.++-|..|+..+.. +..+.... ...
T Consensus 324 -Wigt~~~Gl~~~~~~~~~--~~~~~~~~---------------~~~--------------------------------- 352 (795)
T 4a2l_A 324 -WLGTYFGGLNYYHPIRNR--FKNIRNIP---------------YKN--------------------------------- 352 (795)
T ss_dssp -EEEESSSCEEEECGGGGS--SEEECCCT---------------TSS---------------------------------
T ss_pred -EEEECCCCeEEeCCCccc--ceEEcCCC---------------CCC---------------------------------
Confidence 557777778888765431 11111000 000
Q ss_pred CeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCC
Q 001319 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1101)
......|.++...++|. +..++.++.+..|+...... ..+....+. ....-.
T Consensus 353 ----------~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-----~~~~l~ 404 (795)
T 4a2l_A 353 ----------SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-----SARGIG 404 (795)
T ss_dssp ----------SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC-----------CCS
T ss_pred ----------CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-----cccCCC
Confidence 11345677888888776 56666666677776432110 000000000 000003
Q ss_pred CCCEeEEEecCCCC-eEEEEcCCeEEEEECCCceEEEEee----CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 804 EEAVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
...|.+++..++|. +.+...++.|..||..+++...... .+...|.++...+ ++.+.+ |+. +-+.+|+..++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQR 481 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTT
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCC
Confidence 46799999999998 5554446789999998876544322 1345688999887 676554 444 45899998877
Q ss_pred eEEEeecc------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-ecCCCCCCCcceEEEcCCCCEE
Q 001319 879 EVKSKLKG------HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 879 ~~~~~~~~------h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
+....... +...|.++...++|+..+... + -|..||..+++. ..... ...+-....+.++..+++|.+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred eEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 65432211 236799999999988766544 4 488898876543 11000 0111112467889999999977
Q ss_pred EEEeCCeEEEEEcCCceeeeEeccCCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC
Q 001319 952 LVVHETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1030 (1101)
Q Consensus 952 ~~~~d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
+++.. .+..||..+++... +...++ ....|.++...++|++.+++ ++-|..||..+++.. .+......+
T Consensus 558 igT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~----- 627 (795)
T 4a2l_A 558 VGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQ----- 627 (795)
T ss_dssp EEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCS-----
T ss_pred EEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCc-----
Confidence 66554 79999987765433 322111 14569999999999877665 345888998877643 333211111
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1031 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1031 h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
......-++...+ ++. |..|+.+| +..++...
T Consensus 628 -~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 628 -SNQFNTASYCRTS-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp -CSCEEEEEEEECT-TSC-EEEEETTE-EEEECGGG
T ss_pred -cccCccCceeECC-CCe-EEEecCCc-eEEEcHHH
Confidence 1111122444455 455 55556666 55666543
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=5.8e-14 Score=150.94 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=177.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC------CCCCeeEEEEecCCCCEEEEEeC-CCcEEEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGTE-DSTIHIYN 874 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~-dg~v~iwd 874 (1101)
+-....+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.++.++++... ++.|++|+
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456688999999999888876 7899999987 666666542 33568899995327777766643 88999999
Q ss_pred eecceEEEeec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 875 VRVDEVKSKLK-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 875 ~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||... +.... ... ... ...+..++++++|.++++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~--~~~-~~~-~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKH-LEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTT-CSSEEEEEECSSSEEEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEE--eCC-CCc-cCCcEEEEECCCCCEEEE
Confidence 6677766664 3456789999999999888888889999999653 32211 111 111 146789999999997776
Q ss_pred Ee-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeEeeCCCCcCCCcccCC
Q 001319 954 VH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAPSTYLSPSVLNG 1031 (1101)
Q Consensus 954 ~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~h 1031 (1101)
.. ++.|.+|+.. ++.+..+... ++...+..++++++|+++++...++ .|.+||. +++.+..+.. +
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----------~ 247 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----------K 247 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----------S
T ss_pred ECCCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----------c
Confidence 44 8899999974 5555555432 2236789999999999888888776 9999995 4666655542 2
Q ss_pred CCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1032 SQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1032 ~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
.....+.+++++| ++.++++ +.|++|++|++...
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 2223467899999 6777777 67999999998654
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=7.5e-15 Score=163.11 Aligned_cols=262 Identities=10% Similarity=0.119 Sum_probs=176.3
Q ss_pred CcEEEEEEecCCceEEEEE--------eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 345 STVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
..+...+| ||++++.+. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 36777888 898765442 236789999998876432 2 4688999999
Q ss_pred CCCEEEEEECC---C--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC------------------
Q 001319 417 DGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------ 473 (1101)
Q Consensus 417 dg~~las~~~d---~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~------------------ 473 (1101)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47888888876443 333334 999999999994 544432
Q ss_pred ---------CceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC-------eEEEEecCCCCeeeeccC
Q 001319 474 ---------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYDA 536 (1101)
Q Consensus 474 ---------d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 536 (1101)
...|.+|| .+++.+..+.. . .+..++|++ +| +++++..++ ...+|.+++ .....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeCC-CceEEecc
Confidence 35799999 56655355655 3 788888876 66 777765542 445665553 33333332
Q ss_pred CCCceEEEEEccCCCEEEEeecCCC----CCceEEEEeCCCCeeEEEecccCCcceEE-EEEeCCCCEEEEEeCCCcEEE
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i 611 (1101)
+ ..+..+ +|||++++.++.... ....|++|| +++......++.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 344444 999999988764221 235788898 5655444444333 5665 8899 88 8888899999999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcE-EEEEcc
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i-~iwd~~ 659 (1101)
| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 33678899999 677777776664 777765
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.67 E-value=4.2e-11 Score=148.41 Aligned_cols=542 Identities=10% Similarity=0.075 Sum_probs=321.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeee-----cccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~-----~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
...|.+|.-.++|. |-.|..+| +..||-.. .+.+.... -....|.++...++|. |..|+.+ -+..|
T Consensus 42 ~n~v~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~l~~n~I~~i~~d~~g~---lWigT~~-Gl~~y 112 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MWFATYDG-VNKYDGYA---FTVYQHNEDDPNSIANDISRIVKTDSQGR---VWIGTRD-GLSRY 112 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEETTE-EEEECSSC---EEEECCCTTCTTSCSCSCEEEEEECTTSC---EEEEESS-CEEEE
T ss_pred cceeEEEEEcCCCC-EEEeecCc-CcccCCCc---eEEEeCCCCCCCcccccceeEEEECCCCC---EEEEeCC-chhee
Confidence 45899999988884 45677777 66676432 22111000 0135699999998887 4445544 48899
Q ss_pred E-cCCceeEEeecCCc----CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-CCc-eEEEEEccCCCEE
Q 001319 481 E-LSGRKLFNFEGHEA----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHW-CTTMLYSADGSRL 553 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~----~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~-v~~~~~s~d~~~l 553 (1101)
| .+++ ...+..... .|.++.... +|.+.+ ++. +.|..||..+.......... ... |.++...++|...
T Consensus 113 d~~~~~-f~~~~~~~~~~~~~i~~i~~d~--~g~lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw 187 (795)
T 4a2l_A 113 DEEKDI-FQNFFYEKNGKHLQVNGIEEIS--PEQLLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIY 187 (795)
T ss_dssp ETTTTE-EEEECCEETTEECCCCEEEEEE--TTEEEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEE
T ss_pred CCCCCe-EEeccccccCCCceEEEEEECC--CCCEEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEE
Confidence 9 5444 333332111 177776543 554444 444 55888987654322211100 113 8888888888766
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----CC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GG 628 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~ 628 (1101)
+.. . ++-|..|+..+++............+.++...+++. +..++.++-+.+||..+++........ -.
T Consensus 188 igt-~----~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 261 (795)
T 4a2l_A 188 IGT-S----TDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSIS 261 (795)
T ss_dssp EEE-S----SSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCS
T ss_pred EEE-C----CCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccC
Confidence 543 2 335888998877654332221233577777777764 555655555899998877654332211 01
Q ss_pred CCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCC
Q 001319 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 708 (1101)
...|.++...++|.+.+ |+.+ -|.+|+..++. +..+..... +..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~--------------~~~------------------ 305 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS--FASYSSNPV--------------ENG------------------ 305 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE--EEEECCCTT--------------STT------------------
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe--EEEEecCCC--------------CCC------------------
Confidence 23578888888887555 4444 58888866541 111110000 000
Q ss_pred CCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 709 VRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 709 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
.-....|.++...++|. +..++.++.+..|+.....+ ..+..
T Consensus 306 -------------------------~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~ 347 (795)
T 4a2l_A 306 -------------------------SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------------KNIRN 347 (795)
T ss_dssp -------------------------SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------------EEECC
T ss_pred -------------------------CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------------eEEcC
Confidence 11345688888888887 56666666677775432211 00000
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC--------CCCCeeEEEEecCCCCE
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS--------PPPASTFLAFHPQDNNI 860 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~s~~~~~~ 860 (1101)
... ...-....|.+++..++|.+.+...++.|..|+..+++....... ....|.+++..+ ++.+
T Consensus 348 ~~~-------~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~ 419 (795)
T 4a2l_A 348 IPY-------KNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSL 419 (795)
T ss_dssp CTT-------SSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTE
T ss_pred CCC-------CCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCE
Confidence 000 000134569999999999877765677899999887765443211 235688999988 7775
Q ss_pred EEEEeCCCcEEEEEeecceEEEeec----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCC
Q 001319 861 IAIGTEDSTIHIYNVRVDEVKSKLK----GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 936 (1101)
Q Consensus 861 la~g~~dg~v~iwd~~~~~~~~~~~----~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 936 (1101)
|.+|+.++-|..||..+++...... .+...|.++...++|++.+.. .+| |.+||..+++...............
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCC
T ss_pred EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCC
Confidence 6678887789999988776543221 234679999998888866644 444 8899988754321110000001112
Q ss_pred CCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEecc----CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 937 TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTP----QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~----~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
..+.++..+++|.+.+... +.+..|+..+++. .+.. .......|.++...++|++.++.. . -|..||..++
T Consensus 498 ~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp CCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred ceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 5688899999999877766 7799999887765 2221 011246799999999999666544 3 5889998877
Q ss_pred ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1013 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+... +.....++ .. .+.++...+ ++.+.+++ ++.|..|+..+++
T Consensus 573 ~~~~-~~~~~gl~------~~--~i~~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 573 QIKR-YNTTNGLP------NN--VVYGILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EEEE-ECGGGTCS------CS--CEEEEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred cEEE-eCCCCCCc------hh--heEEEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 5543 22111111 11 245677776 57776665 4567888877654
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.8e-14 Score=158.08 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=184.8
Q ss_pred CCCCEeEEEecCCCCeEEEEc-C------------------------CeEEEEECCCceEEEEee-CCCCCeeEEEEecC
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-G------------------------GKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQ 856 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~ 856 (1101)
.-..+.+++++++|+++++.. + +.|.+||..+++.+..+. ++......+++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~- 100 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT- 100 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-
Confidence 346689999999999998887 4 379999999999877665 3445789999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecce-EEEee---------ccCCCCeeEEEEcC-CCCEEEEEe-CCCcEEEEECCCCcccc
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDE-VKSKL---------KGHQKRITGLAFST-SLNILVSSG-ADAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~-~~~~~---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~v~lwd~~~~~~~~ 924 (1101)
+++++++...++.|++|+..... .+..+ .++...+..++++| ++.++++.+ .++.|++|+. .++...
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEE
Confidence 88888888889999999975442 44444 34555789999999 788888886 6899999994 444332
Q ss_pred ceEEeecC----CCCCCCcceEEEcCC-CCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc------CC
Q 001319 925 SVTIHIPA----GKTPTGDTRVQFNAD-QVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC------NS 992 (1101)
Q Consensus 925 ~~~~~~~~----~~~~~~v~~~~~s~d-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~------dg 992 (1101)
.....-.. .........++++|+ +.++++. .++.|++|+..+++.+..+... .+...+..++|+| +|
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEETTEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecCCEEEEeCC
Confidence 22111000 001134788999999 5544443 3789999999989988887543 3367788999999 44
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
+..++...+..|++||+.+++.+..+... ..+...+.+++++| ++.++++...+++|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV---------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS---------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC---------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 43333445568999999999998877521 12234567899999 6789999999999999998653
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.2e-13 Score=152.22 Aligned_cols=272 Identities=10% Similarity=0.015 Sum_probs=184.4
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
..|.+++|+|++.. ++..+.++.++.|. ++... .+.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 35788899999874 45557788999992 22221 144566678999999999988888
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEE-cCCceeEEee--cCCcCe
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd-~~~~~~~~~~--~h~~~v 497 (1101)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+|| .++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999999876433 1224667899999999998 66666656 6899999 4444332332 244568
Q ss_pred EEEecccCCCccEEEEecc------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..+++.+ +|.++++... .+.|..|+.++.+... +......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8999876 5667666553 2455555554433322 2222335788999999997765542 2678999998
Q ss_pred CC-CeeEEEe------cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC----CCCCCeeEEecC
Q 001319 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (1101)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~ 640 (1101)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322211 1111125677999999988887778899999998 4666666644321 114789999999
Q ss_pred CCEEEEEEcCC
Q 001319 641 GNLLAVTTADN 651 (1101)
Q Consensus 641 g~~l~~~~~d~ 651 (1101)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 88887776653
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=3.3e-13 Score=145.75 Aligned_cols=244 Identities=7% Similarity=-0.014 Sum_probs=174.7
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
...+.....+++|+|+|+.+++++..++.|..||..++ . . .+..+...+.+++|+|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-------------------~~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-------------------PEMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-------------------EEESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-------------------EEECCCCCcceeeECCCCc
Confidence 33456778999999999877788889999999999876 2 2 1334667899999999999
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEE----ec-------------CCceEEEEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVT----CG-------------DDKLIKVWE 481 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s----~~-------------~d~~v~iwd 481 (1101)
++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 888777778999999988764321111111 123567899999998 6776 33 134566666
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-CCCe---eeeccCCCCceEEEEEccCCCEEEEee
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
..++ +..+..+......++|++ +++.+++.+.++.|.+|++. ++.. ...+......+.+++++++|++.++.
T Consensus 160 ~~g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PDGT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TTSC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CCCC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 4444 445556667789999977 56777888888999999987 3333 22223344457789999999877665
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE-eCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
++.|.+||.. ++.+..+..+.. +..++| +|+++.|++++.+ .+..++..+.++
T Consensus 236 -----~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 -----GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp -----TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred -----CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4579999986 777777776654 777889 5888999988876 455556655543
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.62 E-value=1.4e-13 Score=168.45 Aligned_cols=249 Identities=9% Similarity=0.006 Sum_probs=172.7
Q ss_pred ccCCccEEEEEEccCCCEEEEEECCC-----eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce-
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~- 476 (1101)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. + ..+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~-~-~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE-R-VKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE-E-ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc-C-cccceEEEEeCCC--EEEEEEECCcc
Confidence 34666899999999999999876543 899999999886542 121 2 2367899999999 5666666655
Q ss_pred ---------------EEEEE-cCCce----eEEeecCCcCeEEEecccCCCccEEEEecc-----CCeEEEEecCC----
Q 001319 477 ---------------IKVWE-LSGRK----LFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (1101)
Q Consensus 477 ---------------v~iwd-~~~~~----~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-----d~~i~~wd~~~---- 527 (1101)
|++|+ .++.. +.....|...+..+.|++ ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 55542 222233555678888877 6678877664 56899999976
Q ss_pred --CC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCC-cceEEEEEeCCCCEEE
Q 001319 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (1101)
Q Consensus 528 --~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 601 (1101)
+. ....+..+...+.. .|+++|+.++..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 33444444444444 58899998887765333356899999988742 244444433 3577788887777777
Q ss_pred EEeCCCc--EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc----CCcEEEEEccccc
Q 001319 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1101)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~~ 662 (1101)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+.++.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777874 667787678777777655 335778889999887765432 4689999987763
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=2.8e-13 Score=150.28 Aligned_cols=243 Identities=10% Similarity=0.119 Sum_probs=164.5
Q ss_pred CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC-CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 517 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
++.|.+||+.+++.... ..+..++|||||++|+..+... ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 67899999987765433 4578899999999999876422 134568999999888766554432 78899999
Q ss_pred CCCEEEEEeC---------------------------CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 596 TQNHFLAVGE---------------------------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 596 ~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
+|+.|+.++. ...|++||+.+++.+..+.. . .+..++|+|+| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEe
Confidence 9999988763 25799999998887444443 1 57899999999 777665
Q ss_pred cCC-------cEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 649 ADN-------GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 649 ~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
.++ ...+|.+.++
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~------------------------------------------------------------ 208 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG------------------------------------------------------------ 208 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT------------------------------------------------------------
T ss_pred cccccccccccccEEEeCCC------------------------------------------------------------
Confidence 442 1222221110
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1101)
..+.+ .
T Consensus 209 --~~~~l------------------------~------------------------------------------------ 214 (347)
T 2gop_A 209 --KEEKM------------------------F------------------------------------------------ 214 (347)
T ss_dssp --EEEEE------------------------E------------------------------------------------
T ss_pred --ceEEe------------------------c------------------------------------------------
Confidence 00000 0
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-C--------CeEEEEECCCceEEEEeeCCCCCeeE-EEEecCCCCEEEEEeCCCcEE
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-G--------GKISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-d--------g~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg~v~ 871 (1101)
.+ ..+..+ +|||+.|+.++ + ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEE
Confidence 01 112222 66666665543 2 3577888 56655545556677886 8897 45 889999999999
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcE-EEEECC
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL-CVWSID 918 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v-~lwd~~ 918 (1101)
|| +.+++... +..+.+.|.+++|+| ..+++++.++.. .+|.++
T Consensus 287 l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 88766544 444578899999999 677777777765 788776
No 186
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=4e-09 Score=130.37 Aligned_cols=594 Identities=11% Similarity=0.087 Sum_probs=335.5
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|.+|.-.++|.-. .|+.+| +..||-.+ |+.+... . .+.. ...-....|.++...++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~--------f~~~~~~-~-~~~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLW--FATEEG-LNKFDGTR--------FITYYKE-E-QSSS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCEE--EEESSC-EEEECSSS--------EEEECCC-S-SCSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCEE--EccCCc-CccccCCc--------eEEEEcC-C-CCCc--cccccccccceEEEcCCCCEEEE
Confidence 4589999999999733 455665 55666322 1111110 0 0000 00012357999999988884566
Q ss_pred EECCCeEEEEeecCCccccccee-eec---ccCcEEEEEEec--CCCceEEEEecCCceEEEEEcCCceeEEeec-----
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQ-IDA---HVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG----- 492 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~-l~~---h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----- 492 (1101)
|+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999887653221000 000 123688888877 665 4445545568889943333333321
Q ss_pred -CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------cCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 493 -h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
....|.++.... +| .|..++.++-|..||..+....... ......|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 124577776533 44 4555666656888887665433211 11235689999988888766542 3
Q ss_pred eEEEEeCCCCeeEEEecc------cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec-------cC-----
Q 001319 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE----- 626 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 626 (1101)
-|.+||..+++....... .....|.++...++| .+..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 588999887765433221 123357778877776 45666665678899987765432211 00
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceecc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 706 (1101)
-....|.++...++|. |.+|+.++-|..++..+.. +..+.. .+..
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~---------------~~~~----------------- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY---------------SPTQ----------------- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------C-----------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc---------------Cccc-----------------
Confidence 1123577888888776 5556767778787765431 111100 0000
Q ss_pred CCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccc
Q 001319 707 SPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 786 (1101)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~ 786 (1101)
..........|.++...++|. +..++.++.+..|+...... ..+
T Consensus 355 -----------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~ 398 (781)
T 3v9f_A 355 -----------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA------------IYN 398 (781)
T ss_dssp -----------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE------------ECC
T ss_pred -----------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE------------EEc
Confidence 000011335577888777776 55566555566665322100 000
Q ss_pred ccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEee--CCCCCeeEEEEecCCCCEEEEE
Q 001319 787 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~la~g 864 (1101)
. .. .......|.+++..++|.+.+...++.+..+|..+++...... .....|.++...+ ++.+. +|
T Consensus 399 ~-~~---------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-ig 466 (781)
T 3v9f_A 399 K-EN---------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IG 466 (781)
T ss_dssp ---------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EE
T ss_pred c-CC---------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EE
Confidence 0 00 0014567999999888887775556779999988776543321 1345788988887 66544 45
Q ss_pred eCCCcEEEEEeecceEEEeeccC-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
+. +-|..|+..+++........ ...|.++...++|++.+....+| |..||..+++.. ......+-....+
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~~~~l~~~~i 541 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQYEGFCSNTI 541 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECTTTTCSCSCE
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccCCCCCCCCee
Confidence 55 55899998776543322211 46799999999888666443345 777888765321 1111222223567
Q ss_pred ceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 001319 940 TRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.++...++|.+.+++.+|-+..||..+++.. .+....+ ....|.++...++|++.+++ ..| |..|+..+..... +
T Consensus 542 ~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~~~-~ 617 (781)
T 3v9f_A 542 NQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCFYT-Y 617 (781)
T ss_dssp EEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEEEE-E
T ss_pred EEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCceEE-e
Confidence 8899999999777766443388888776532 3322211 13468899999999866654 455 8888988765433 3
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
......+ ......-++...+ ++. |..|+.+| +..++...
T Consensus 618 ~~~dGl~------~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 618 DHSNNIP------QGSFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp CGGGTCC------SSCEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred cccCCcc------ccccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 2111111 1111122344445 455 55566666 56677654
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=3.5e-13 Score=148.55 Aligned_cols=275 Identities=12% Similarity=0.094 Sum_probs=184.2
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
...+.++.|++++..++..+.++.++.|.-. .... +. .+...+.+++|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~--~~~~~~~~~~~~~~g 56 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-IS--KKGLQLEGLNFDRQG 56 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EE--SSCCCEEEEEECTTS
T ss_pred ccccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Ee--ccCccccCcEECCCC
Confidence 3456778899998888877777777777311 0000 11 144557899999999
Q ss_pred CeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC----CcEEEEEeecceEEEeec--cCCC
Q 001319 817 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLK--GHQK 889 (1101)
Q Consensus 817 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~v~iwd~~~~~~~~~~~--~h~~ 889 (1101)
++++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|++||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9887776 78999999998887665545667899999999 88888777666 689999988776543332 3456
Q ss_pred CeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEE
Q 001319 890 RITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAI 961 (1101)
Q Consensus 890 ~V~~l~~s~d~~~l~s~s~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v 961 (1101)
.+.+++++|+|+++++... .+.|..|+..+++...... . ......++|+||++.|.++. ++.|.+
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~------~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-N------ISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-E------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-C------CCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 7999999999998887654 2455566655543321111 1 03467899999999776643 689999
Q ss_pred EEcCC-ceeeeEe-----ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCcc
Q 001319 962 YDASK-MERIRQW-----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1035 (1101)
Q Consensus 962 ~d~~~-~~~~~~~-----~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~ 1035 (1101)
|+..+ +..+..+ ..... ...+..++++++|+++++...++.|.+||. +++.+..+..... . ..+..
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~----~--~g~~~ 280 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR----D--EGHML 280 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG----G--GTCSC
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC----c--ccccc
Confidence 99963 3322211 11111 246788999999998888878899999998 4666655542110 0 01111
Q ss_pred ceEEEEEecCCCCEEEEEECC
Q 001319 1036 YPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 1036 ~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
.+.+++|+| |+..|+.++.+
T Consensus 281 ~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 281 RSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp BCCEEEECT-TSCEEEEEEEC
T ss_pred CcceEEECC-CCCEEEEEeCc
Confidence 456889998 56555544444
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=2.4e-13 Score=143.78 Aligned_cols=253 Identities=9% Similarity=0.045 Sum_probs=190.0
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC-CCe
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRI 891 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~V 891 (1101)
.+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998876 5789999999 889888 45788999998 899998887653 578
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCcee
Q 001319 892 TGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 969 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 969 (1101)
.++.+.+||+++++.+. ++.|..+|. +|+.+..................+++.++|.++++.. ++.|..||.+ |+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 89999999999999887 777777776 5555444433211111113455678899999998864 8999999998 999
Q ss_pred eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 970 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 970 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
+..+... ..+..+.+.++|..+++++.++.|..+|..+|+.+..+...... ...-..+..+...+ ++.+
T Consensus 158 ~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~~~~~-~G~i 226 (276)
T 3no2_A 158 LNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQLFPLQ-NGGL 226 (276)
T ss_dssp EEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEEEECT-TSCE
T ss_pred EEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------CccccccccceEcC-CCCE
Confidence 8888763 34556788999999999988889999999999998887621100 11123466788888 6888
Q ss_pred EEEEECC--------CeEEEEeC-CCCCCccccCCCCCCCCCCc
Q 001319 1050 FAIGLTD--------GSVKVMEP-SESEGKWGVSPPVDNGILNS 1084 (1101)
Q Consensus 1050 l~s~~~D--------g~v~iWd~-~~~~~~~~~~~~~~~~~~~~ 1084 (1101)
+++.... +..+++++ .+++-.|......+-|.+++
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 8877421 23456666 46678888877777776665
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=2.4e-13 Score=148.70 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=176.1
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
.....+++. ++++.++.. ++.|.+||..+++.+.++.. ......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 446677775 344555554 79999999999999888853 46788999998 776555554899999999999988876
Q ss_pred eccCC-----CCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-C
Q 001319 884 LKGHQ-----KRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 956 (1101)
Q Consensus 884 ~~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d 956 (1101)
+.... .....+++ .+++.+++.. .++.|.+||..+++....... + .....++++|+|++++++. +
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g---~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G---IQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S---SCBCCCEECTTSEEEEEBCCB
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C---CCccceEEcCCCCEEEEECCC
Confidence 65332 14567888 3444444433 488999999999876544322 2 3456789999999777743 3
Q ss_pred ----------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 957 ----------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 957 ----------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
+.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++..... +.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~-- 262 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FL-- 262 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SB--
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----ee--
Confidence 689999999999887765432 246889999999999988765 8999999988763211 00
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEE----ECCCeEEEEeCCCCCCccc
Q 001319 1027 SVLNGSQTVYPLVVAAHPLEPNQFAIG----LTDGSVKVMEPSESEGKWG 1072 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d~~~l~s~----~~Dg~v~iWd~~~~~~~~~ 1072 (1101)
......+.+++++|.++.++++. ..+++|.+||.. ++..+.
T Consensus 263 ----~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 263 ----EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp ----CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred ----cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 11134567899999767888887 678999999998 774333
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=1.9e-13 Score=167.27 Aligned_cols=248 Identities=8% Similarity=-0.019 Sum_probs=170.1
Q ss_pred CCCcEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
|...+.+++|||||++|+.+.+.+| .|++||+.+++.+.. .+ ....+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~--~~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VL--ERVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EE--EEECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cc--cCcccceEEEEeCC
Confidence 4457899999999997644433333 899999999876531 01 11236789999999
Q ss_pred CEEEEEECCCe----------------EEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecC-----Cce
Q 001319 419 NYVGVAFTKHL----------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKL 476 (1101)
Q Consensus 419 ~~las~~~d~~----------------i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-----d~~ 476 (1101)
+.|+.++.++. |++|++.+++... .......|...+..++|+|||++ |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 9999998876321 11122235666889999999995 443332 678
Q ss_pred EEEEE-cC------Cc-eeEEeecCCcCeEEEecccCCCccEEEEeccC----CeEEEEecCCCCe--eeeccCCC--Cc
Q 001319 477 IKVWE-LS------GR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS--RVDYDAPG--HW 540 (1101)
Q Consensus 477 v~iwd-~~------~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~--~~~~~~~~--~~ 540 (1101)
|.+|| .+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+. ..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 44 43 466777777666553 555 44555554432 3699999987642 22333333 36
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCC
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDN 616 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 616 (1101)
+..++|++++.++++... ++...|++|++.+++.++.+..+.. .+..++++|+++.++... ..+.|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999877766666654 3345688889878887777777643 677788999988776542 457899999988
Q ss_pred Ce
Q 001319 617 VN 618 (1101)
Q Consensus 617 ~~ 618 (1101)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 76
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=6e-13 Score=140.75 Aligned_cols=242 Identities=11% Similarity=0.075 Sum_probs=179.5
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC-ccEEEEEEccCCCEEEEEECCCeEEEEeecC
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~las~~~d~~i~vwd~~~ 437 (1101)
++++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 678999999999999989987653 33333 4688999999999998 45778999999 7
Q ss_pred Ccccccceeeecc-cCcEEEEEEecCCCceEEEEecC-CceEEEEEcCCceeEEeecC------CcCeEEEecccCCCcc
Q 001319 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQ 509 (1101)
Q Consensus 438 ~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~h------~~~v~~v~~~~~~~~~ 509 (1101)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+..+... ......+++ ..+|+
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 77665 34443 34788999999999 6777766 78888889889988776521 123334444 34778
Q ss_pred EEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC----
Q 001319 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---- 585 (1101)
++++...++.|..||.+ ++....+.... .+.++.+.++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999987 88888877653 4567788899999988764 66899999999999988864321
Q ss_pred -cceEEEEEeCCCCEEEEEeCC--------CcEEEEEC-CCCeeeEeeccCCCCCCCCee
Q 001319 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 586 -~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v 635 (1101)
..+..++..++|+.+++.... +..+++.+ .+++.+..+........+..+
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 125678888999888776411 23345555 477888887766655555554
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=4.6e-12 Score=140.15 Aligned_cols=201 Identities=10% Similarity=0.020 Sum_probs=142.6
Q ss_pred eEEEecCCCCeEEEEc---CCeEEEEECCCceEEEE-eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 808 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||++.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4689999999988775 36799999 99998887 65322 24555635566777889999999999 8876633
Q ss_pred ec-----cCCCC-eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCCEE
Q 001319 884 LK-----GHQKR-ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 884 ~~-----~h~~~-V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l 951 (1101)
.. ....+ .....+.+++..++..+..+.|.+.|+.++.......+... .+..+.....++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 11122 23356677766655555788999999976543211111111 11111334458899999988
Q ss_pred EEEe-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEee
Q 001319 952 LVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 952 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.+.. .+.|.++|..+++.+..+.. ......++|+|||+ +++++. .++.|.|||+.+++.+..+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8743 25799999999999999865 44689999999999 777776 5899999999999999884
No 193
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=1.1e-12 Score=142.21 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=144.9
Q ss_pred EeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-ceEEE
Q 001319 807 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKS 882 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-~~~~~ 882 (1101)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34588999999887764 4789999999999999886532 1 233433 566777888899999888876 55432
Q ss_pred eeccC----CCCee-EEEEc-CCCCEEEEEeCCCcEEEEECCCCccccceEEee------cCCCCCCCcceEEEcCCCCE
Q 001319 883 KLKGH----QKRIT-GLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI------PAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 883 ~~~~h----~~~V~-~l~~s-~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~d~~~ 950 (1101)
....+ ..++. ..+|. ++|++++ .+.+|+|.+.|+.++.......+.. ..+-.+.....+++++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 21111 12222 24664 6775544 6668999999998765322111110 11212245567899999999
Q ss_pred EEEEe-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEe
Q 001319 951 MLVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCY 1017 (1101)
Q Consensus 951 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~ 1017 (1101)
+.+.. .+.|.++|+.+++.+..+.. ..++..++|++|++ +|+++. .++.|.|+|..+++.+.+
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 98853 25799999999999999887 45788999999997 666654 589999999999999998
Q ss_pred eCC
Q 001319 1018 IAP 1020 (1101)
Q Consensus 1018 ~~~ 1020 (1101)
+..
T Consensus 370 i~~ 372 (386)
T 3sjl_D 370 VNQ 372 (386)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1e-13 Score=168.99 Aligned_cols=247 Identities=10% Similarity=-0.054 Sum_probs=164.8
Q ss_pred ccCCccEEEEEEccCCCEEEEE-----ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce-
Q 001319 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~- 476 (1101)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4577789999999999999944 4456899999999886511 011111 126899999999 6777777665
Q ss_pred ------------EEEEE-cCCc----eeEEeecCCcCeEEEecccCCCccEEEEeccCC----eEEEEecCCCCeeeecc
Q 001319 477 ------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 477 ------------v~iwd-~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~ 535 (1101)
|++|+ .++. .+.....|...+..+.|++ ||++|+.++.++ .|.+|+..++.. ..+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence 99999 5554 3334445666788889877 667887777665 666676544433 3333
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee---EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEE
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1101)
.+...+....+ ++|. ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444555556 6777 555443222468899999987753 333433324357778887 56677778889988887
Q ss_pred ECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc----CCcEEEEEcccc
Q 001319 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1101)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~ 661 (1101)
.+. +++....+..+. ...+..++++|++..++.... .++|++||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 654 355555554332 235678889999987775433 468999998876
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=9.2e-12 Score=134.66 Aligned_cols=282 Identities=9% Similarity=-0.054 Sum_probs=192.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... ....+...+.+++++++|.+.+
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 55555557899999987 543220 1222456799999999999888
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~~~v~~v~ 501 (1101)
+...++.|..||.+ ++ .... .+......+.++++.++|. ++++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 77778889999986 33 2211 2223455789999999998 67777778899999975554322 233445688888
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeee-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+.+ +|.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEEE
Confidence 865 5667777777889999998 4443322 333345688999999998766653 2678999999 66644321
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
.......+..++++++|+.+++...++.|..||. +++. ..+....+...+.++++ ++|.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212236788999999886666657889999998 4543 33332233346788999 8887766554 56677777654
Q ss_pred c
Q 001319 661 G 661 (1101)
Q Consensus 661 ~ 661 (1101)
.
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=7.5e-14 Score=170.27 Aligned_cols=248 Identities=7% Similarity=-0.066 Sum_probs=162.2
Q ss_pred CCCcEEEEEEecCCceEEEEE----eccCcEEEEecCCCcee-ccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg----~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
|...+.+++|||||++|+.+. +.+..|++||+.+++.+ .. .+.+. ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 555799999999999764443 33468999999998764 10 01111 1267999999
Q ss_pred CCEEEEEECCCe-------------EEEEeecCCccc-ccceeeecccCcEEEEEEecCCCceEEEEecCCc----eEEE
Q 001319 418 GNYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKV 479 (1101)
Q Consensus 418 g~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~----~v~i 479 (1101)
|+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||++ |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999998776 999999987632 112233346678999999999995 44444333 6777
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEec---cCCeEEEEecCCCCe---eeeccCC-CCceEEEEEccCCCE
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAP-GHWCTTMLYSADGSR 552 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~d~~~ 552 (1101)
||..+.....+..+...+....+ + +|.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++..
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 257 KRPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp ECTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EcCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 77433345566666666666655 3 344444444 258899999987653 2223222 4467888887 5666
Q ss_pred EEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCee
Q 001319 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1101)
+++... ++...|+++++. ++..+.+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 333 v~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 333 SLEYLK--DATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE--TTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE--CCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 666654 223344444543 5555666555343566778889988777433 457899999988764
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=1e-12 Score=141.84 Aligned_cols=235 Identities=12% Similarity=0.048 Sum_probs=165.9
Q ss_pred cccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 444566788999999998 7778888999999999986 33 4556778899999999998 67777778899999
Q ss_pred E-cCCceeEEeecC----CcCeEEEecccCCCccEEEE----ecc-------------CCeEEEEecCCCCeeeeccCCC
Q 001319 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 481 d-~~~~~~~~~~~h----~~~v~~v~~~~~~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
| .+|+........ ...+..+++.+ +|.++++ ++. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 577754333221 12456788865 6677776 331 2345555443 3334444455
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCee---EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
.....++|+|+|+.+++.. .++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 5678999999999985543 36789999986 5554 3444 2222345679999999866655 889999998
Q ss_pred CCCeeeEeeccCCCCCCCCeeEE-ecCCCEEEEEEcCCcEEEEEcc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~-s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +..++..
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 6 777777765432 789999 58999999988763 3333443
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=8.4e-13 Score=144.38 Aligned_cols=269 Identities=11% Similarity=-0.024 Sum_probs=184.3
Q ss_pred ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccc
Q 001319 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (1101)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 444 (1101)
.++.|.+||..+++..... +. ...-.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~---------~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FY---------RANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HH---------HHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hh---------hhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3889999999998765420 00 00001122456777774 455555556678999999999987663
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC-----cCeEEEecccCCCccEEEEec-cC
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA-ID 517 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~-----~~v~~v~~~~~~~~~~l~s~~-~d 517 (1101)
+. .......++++++++ ++++...++.|.+|| .+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 33 346689999999986 666665799999999 7777776665433 13456666 2 334444443 48
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC------CceEEEEeCCCCeeEEEecccCCcceEEE
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 591 (1101)
+.|.+||..+.+....+... .....++++++|++++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 89999999988776665543 345788999999977766431000 26899999999998877764433357889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEEEE----EcCCcEEEEEcc
Q 001319 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANA 659 (1101)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~----~~d~~i~iwd~~ 659 (1101)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||..
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999999988765 89999998887642211111122467899999 45555554 467899999987
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=2.1e-12 Score=139.89 Aligned_cols=301 Identities=12% Similarity=0.057 Sum_probs=199.5
Q ss_pred ccCCCccEEEEecc-----CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC------CCCCceEEEEeC
Q 001319 503 HHKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNE 571 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~------~~~~~~i~iwd~ 571 (1101)
.|.+++..+++... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34557777777765 679999999998888777655554 4 9999999998876520 012567999999
Q ss_pred CCCeeEEEecccC------CcceEEEEEeCCCCEEEEEeC--CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 572 SEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 572 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.+.+.+.++.... +.....++|+|||++++++.. ++.|.++|+.+++.+.++...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 9999988875422 113445899999999998863 68999999999999998865321 2233334567
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCC
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSG 723 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 723 (1101)
+++.+.||.+.+.++.+..........
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~----------------------------------------------------- 218 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTE----------------------------------------------------- 218 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECC-----------------------------------------------------
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecc-----------------------------------------------------
Confidence 778888888888777542111000000
Q ss_pred CeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCC
Q 001319 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1101)
.+++ .
T Consensus 219 -------------------------------------------------------------~~~~--------------~ 223 (386)
T 3sjl_D 219 -------------------------------------------------------------VFHP--------------E 223 (386)
T ss_dssp -------------------------------------------------------------CCSC--------------T
T ss_pred -------------------------------------------------------------eecc--------------c
Confidence 0000 0
Q ss_pred CCCE-eEEEe-cCCCCeEEEEcCCeEEEEECCCce--EEEEee---------C-CCCCeeEEEEecCCCCEEEEEeC---
Q 001319 804 EEAV-PCIAL-SKNDSYVMSATGGKISLFNMMTFK--VMTTFM---------S-PPPASTFLAFHPQDNNIIAIGTE--- 866 (1101)
Q Consensus 804 ~~~v-~~~~~-s~dg~~la~~~dg~i~vwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~~~~~la~g~~--- 866 (1101)
..++ ....| .++|+++....+|++.+.|+.+.. ....+. + ..+....+++++ +++.+.+...
T Consensus 224 ~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRD 302 (386)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECC
T ss_pred cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEecccc
Confidence 0000 01133 367766666567888888886553 222221 0 123455688898 6666666542
Q ss_pred -------CCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCC-EEEEE-eCCCcEEEEECCCCccccceEEeecCCCCCC
Q 001319 867 -------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 867 -------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
.++|.++|+.+++.+..+..- .++..|++++|++ +|++. ..++.|.++|..+++.+...... .
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-------~ 374 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-------G 374 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-------C
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-------C
Confidence 257999999999999887632 3688999999997 66664 55899999999998866544322 3
Q ss_pred CcceEEEcCC
Q 001319 938 GDTRVQFNAD 947 (1101)
Q Consensus 938 ~v~~~~~s~d 947 (1101)
....+.+++|
T Consensus 375 ~p~~l~~s~d 384 (386)
T 3sjl_D 375 HGPQVITTAD 384 (386)
T ss_dssp SSCCEEEECC
T ss_pred CCceeEECCc
Confidence 4456666665
No 200
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.2e-08 Score=126.14 Aligned_cols=558 Identities=11% Similarity=0.026 Sum_probs=317.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeec--------ccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA--------HVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~--------h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
...|.+|.-.++|. |-.|..+| +..||-.. .+.+.. .. ....|.++...++|. .|..|+.++-+
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl 89 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYK-EEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGL 89 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECC-CSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEc-CCCCCccccccccccceEEEcCCCC--EEEEEeCCCCc
Confidence 45899999888875 66777887 67777443 221111 11 123588998887776 25556666578
Q ss_pred EEEE-cCCceeEEeec--------CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-----CCCCceEE
Q 001319 478 KVWE-LSGRKLFNFEG--------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTT 543 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~--------h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~ 543 (1101)
..|| .+++. ..+.. ....|.++......++ .|..++.++.|..||..+........ .....|.+
T Consensus 90 ~~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 167 (781)
T 3v9f_A 90 NAYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWT 167 (781)
T ss_dssp EEEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEE
T ss_pred ceECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEE
Confidence 9999 54443 33311 1235777765321134 45556655668888876554332211 12345888
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc------cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
+...++|...+.. . .+-|..||..+++....... .....+.++...+++...+ |+.+ -+.+||..++
T Consensus 168 i~~d~~g~lwigt-~----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 168 ATEAEDGKLYIGH-V----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTE 240 (781)
T ss_dssp EEEEETTEEEEEE-T----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTT
T ss_pred EEECCCCCEEEEe-c----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCC
Confidence 8888888766543 2 33588899888765432211 1123577788877776544 4555 6899998776
Q ss_pred eeeEeeccC-----CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccc
Q 001319 618 NILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1101)
Q Consensus 618 ~~~~~~~~~-----~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 692 (1101)
+........ -....|.++...++|. |.+|+..+-|.+++..+.. +.......+. .+.-..+.
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~f~-------~~~~~~~~--- 307 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ--FLLPEQIRFE-------FIREGDNN--- 307 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------CE-------EECBCSST---
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe--eeeeeccccc-------cccCCCCC---
Confidence 544322111 1123578888877775 5556665677888876541 1111000000 00000000
Q ss_pred cccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCC
Q 001319 693 VSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 772 (1101)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~ 772 (1101)
.......|.++....+|. +..++.++-+..++.....+
T Consensus 308 ----------------------------------------~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~- 345 (781)
T 3v9f_A 308 ----------------------------------------YSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF- 345 (781)
T ss_dssp ----------------------------------------TSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC-
T ss_pred ----------------------------------------CCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc-
Confidence 011445678888888876 66666566666665432111
Q ss_pred CCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEe---eCCCCCee
Q 001319 773 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF---MSPPPAST 849 (1101)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~ 849 (1101)
..+...... .....-....|.+++..++|.+.+...++.|..||..++...... ......|.
T Consensus 346 -----------~~~~~~~~~----~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 346 -----------HTWSYSPTQ----MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp -----------EEEC----C----CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred -----------eeeccCccc----cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 000000000 000001345699999998888776655677999998765433211 12345688
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec--cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 850 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 850 ~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
+++..+ ++.+. +|+.++-+..++..+++...... .....|.++...++|.+.+ |+. +-|..||..+++......
T Consensus 411 ~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence 888877 66654 57776779999987776543221 2346799999988876555 444 458899988765432111
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
.. ........+.++...++|.+.+...++.+..|+..+++..............|.++...++|.+.++.. +|.|..|
T Consensus 487 ~~-~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~ 564 (781)
T 3v9f_A 487 TS-NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFP 564 (781)
T ss_dssp TT-TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEES
T ss_pred Cc-ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEE
Confidence 00 001112568889999999988877666788899877654332221111256799999999998666544 6655889
Q ss_pred eCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1008 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1008 d~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
|..+++... +.....++ ... +.++...+ ++.+.+++ .+| |..++..+.+
T Consensus 565 d~~~~~~~~-~~~~~gl~------~~~--i~~i~~d~-~g~lW~~t-~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 565 SARNFDYQV-FQRKEGLP------NTH--IRAISEDK-NGNIWAST-NTG-ISCYITSKKC 613 (781)
T ss_dssp CTTTCCCEE-ECGGGTCS------CCC--CCEEEECS-SSCEEEEC-SSC-EEEEETTTTE
T ss_pred CCCCCcEEE-ccccCCCC------Cce--EEEEEECC-CCCEEEEc-CCc-eEEEECCCCc
Confidence 988776432 22111111 112 23566666 56666654 333 6777766544
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=4.8e-11 Score=128.97 Aligned_cols=281 Identities=9% Similarity=0.076 Sum_probs=191.8
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
....+.++++.++|..+++...++.+..|+.. +........ .....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~--~~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLP--TPDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECS--STTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCC--cccCceeeEEECCC
Confidence 45678999999999866666667888888643 111111111 13456889999999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEE-EEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe-eccCCCCee
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRIT 892 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~V~ 892 (1101)
|.+.++.. ++.|..||.. ++.. ..+......+..+++.+ ++.++++...++.|.+||. +++.... ...+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888876 7889999986 4332 22223455789999999 8888887777889999998 5554332 333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeee
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 971 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 971 (1101)
++++.++|+.+++...++.|..||. +++... .... .. ...+..++++++|.+.++.. ++.|.+|+. +++...
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE 217 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-ST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence 9999999988887777889999998 554321 1111 11 24577899999999766653 789999999 665433
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
+... .+...+.+++++++|+++++...++.|.+||. ++... .+.. ......+.++++ + ++.+++
T Consensus 218 -~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~----------~~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 218 -FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI----------QIKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp -EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC----------SSSSCCEEEEEE-C-SSCEEE
T ss_pred -EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC----------CCCCCccceEEe-c-CCCEEE
Confidence 3221 12567999999999997777667889999998 45433 2221 011224567888 6 677777
Q ss_pred EEECCCeEEEEeCCCCC
Q 001319 1052 IGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1052 s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.. .+.+..++..+++
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 6778888876643
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=1.2e-12 Score=139.17 Aligned_cols=240 Identities=7% Similarity=-0.062 Sum_probs=166.9
Q ss_pred cEEEEEEecCCceEEE-EEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~lla-sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 666 54678899999976544221 011233567889999999966655
Q ss_pred ECCCeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEec
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~ 502 (1101)
. ++.|.+||..++.... +. .....+..++++++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987754321 21 2335789999999998 677777788999998 444333222233345778888
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
.+ +|.++++...++.|.+||................+.+++++++|...++.. .++.|.+||............
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 66 567777777789999999877655443333335688999999997666654 367899999876554332222
Q ss_pred cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
+ ...+..++++++|+.+++...++.|+++++...+.
T Consensus 232 ~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2 13578899999998878888899999999876543
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=2.1e-12 Score=137.36 Aligned_cols=239 Identities=8% Similarity=0.021 Sum_probs=168.5
Q ss_pred CEeEEEecCCCCeEE-EEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 806 AVPCIALSKNDSYVM-SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la-~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|++||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 434 68899999866544332223345688999999 778666655 88999999876543322
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEE
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 962 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~ 962 (1101)
.......+.+++++++|+.+++...++.|.+|+..+..... ..... ......++++++|+++++.. ++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS-CCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc-CCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 22333678999999999988887788899999765533211 11111 14678899999998666654 6899999
Q ss_pred EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEE
Q 001319 963 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042 (1101)
Q Consensus 963 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~ 1042 (1101)
+............. ...+..++++++|.++++...++.|.+||..+..... .. ......+.++++
T Consensus 177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----------FTGLNTPLAVAV 241 (270)
T ss_dssp CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----------CCSCSCEEEEEE
T ss_pred ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----------cCCCCCceeEEE
Confidence 98876654332221 3678999999999877777788999999987654332 11 112235678999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1043 HPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1043 ~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++ +++++++...+++|.++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 68899999999999999988765
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=6.7e-12 Score=138.83 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=144.8
Q ss_pred eEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe-
Q 001319 808 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK- 883 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~- 883 (1101)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|.+...+++.+.||++.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3578999999888764 46899999999999988875221 233442446666777888888888866554422
Q ss_pred ---eccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCCEEEE
Q 001319 884 ---LKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 884 ---~~~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+............ .+..+.....++++||+.++.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22222222 2457899998888778889999999976542211111110 0001123345799999998887
Q ss_pred Ee-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEeeC
Q 001319 954 VH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 954 ~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
.. .+.|.++|..+++.+..+.. ......++|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 53 25799999999999999876 44688999999999 888887 59999999999999998873
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=8.7e-11 Score=126.98 Aligned_cols=279 Identities=10% Similarity=-0.042 Sum_probs=190.2
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
....+.+++++++|+ ++++...++.|.+||.. ++... + .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999998 55665567899999987 54321 0 1223346789999999999887
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~~~v~~v~ 501 (1101)
+...++.|..||.. ++... ..+......+.++++.++|+ ++++...++.|..||..++.... +......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77667889999988 54321 12223446789999999998 67777778899999955665422 333445688888
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+.+ ++.+.++...++.|..|+. +++... ........+..+++.++|+..++.. ..+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEEE
Confidence 865 5666666666789999987 333322 2223345688999999998766653 2567999998 55544332
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.......+..++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2212235778999999886666666789999998 45433 332222234678999999998665544 4 6666654
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=2.1e-12 Score=158.56 Aligned_cols=245 Identities=11% Similarity=0.043 Sum_probs=159.5
Q ss_pred cCCccEEEEEEccCCCEEEEEECC-----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc---
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--- 475 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--- 475 (1101)
+|...+..++|||||++||.++.+ ..|++||+++|+.+.. ..+...+..++|+|| + .|+.++.|+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455678999999999999987654 4699999999986441 112222467899999 8 455555444
Q ss_pred -----------eEEEEE-cCCc----eeEEeecCCcCeEEEecccCCCccEEEEeccCC-----eEEEEecCCC--Ceee
Q 001319 476 -----------LIKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSRV 532 (1101)
Q Consensus 476 -----------~v~iwd-~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~ 532 (1101)
.|++|+ .++. .+.....+...+..+.|++ ||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 388999 4444 2222223334578888876 778887776544 8999999876 3133
Q ss_pred eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEE
Q 001319 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1101)
Q Consensus 533 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 610 (1101)
.+..+...+.... +|+|+.|+..+........|.+||+.++ +....+..+ ...+..+++. ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 3333433444443 4899999887754334677999999885 344444443 3356667776 455666777888877
Q ss_pred EEECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc----CCcEEEEEcccc
Q 001319 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1101)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~ 661 (1101)
+|.+. +++....+..+. ...+..++++|++..++.... .++|++||+.++
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77554 455555555332 235778889999876664432 478999998776
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.9e-10 Score=127.18 Aligned_cols=291 Identities=9% Similarity=-0.019 Sum_probs=185.4
Q ss_pred EEecCCCceEEEEe-cCCc--eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEec----------cCCeEEEE
Q 001319 458 AFAYPNKLLCVVTC-GDDK--LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAW 523 (1101)
Q Consensus 458 ~~s~d~~~~~l~s~-~~d~--~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~----------~d~~i~~w 523 (1101)
...|++++++++.. +.+. +|.++| .+++.+.++.....+ .++++| ||++++.+. .++.|.+|
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECC--CCCEEEEEeccccccccCCCCCeEEEE
Confidence 44567774222222 2222 889999 888888877654444 888877 667888775 36789999
Q ss_pred ecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE-ecccCCcceEEEEEeC
Q 001319 524 LYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 524 d~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~ 595 (1101)
|..+.+....+... ......++++|||++|+++... .++.|.++| .+++.+.. +.... ++.+.|
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~--~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~ 174 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA--AGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHP 174 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC--CCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEe
Confidence 99887766655432 2235689999999999987631 146799999 99998877 65321 244556
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCeeeEeecc----CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccC
Q 001319 596 TQ-NHFLAVGEDSQIKFWDMDNVNILTSTDA----EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1101)
Q Consensus 596 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 670 (1101)
++ +.+++.+.||.+.++|. +++....... .+...-.....+.+++..++..+..+.+.+.|+.+....+ ...
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v--~~~ 251 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN--KAP 251 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE--eee
Confidence 55 44556778999999999 8776643221 1111111234566666655555567788888775431100 000
Q ss_pred CCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc
Q 001319 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750 (1101)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 750 (1101)
. .+ .........+
T Consensus 252 --~-------------------------------------------------------~~-----~~~~~~~~~~----- 264 (373)
T 2mad_H 252 --I-------------------------------------------------------DA-----LSGGRKADTW----- 264 (373)
T ss_pred --e-------------------------------------------------------ee-----cCCcccccce-----
Confidence 0 00 0000000001
Q ss_pred cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-------
Q 001319 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------- 823 (1101)
Q Consensus 751 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~------- 823 (1101)
.......+++++|++.+.++.
T Consensus 265 ----------------------------------------------------~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 265 ----------------------------------------------------RPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred ----------------------------------------------------ecCceEeEEECCCCCEEEEEeccCCccc
Confidence 111123356677776655532
Q ss_pred ----CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEEe-CCCcEEEEEeecceEEEee
Q 001319 824 ----GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 824 ----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~-~dg~v~iwd~~~~~~~~~~ 884 (1101)
++.|.++|+.+++.+.++.. ......++|+| |++ +++++. .++.|.+||+.+++.+..+
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 25799999999999998864 34689999999 777 777776 5899999999999988774
No 208
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=4.9e-12 Score=155.31 Aligned_cols=247 Identities=8% Similarity=-0.049 Sum_probs=156.9
Q ss_pred CCCcEEEEEEecCCceEEEEEecc----CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
|...+.+++|||||++++.+.+.+ ..|++||+.+++.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 344789999999999764443333 3699999999876431 011122357899999
Q ss_pred CEEEEEECCCe--------------EEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecC-----CceEE
Q 001319 419 NYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIK 478 (1101)
Q Consensus 419 ~~las~~~d~~--------------i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-----d~~v~ 478 (1101)
+.|+.++.++. |++|++.++.... .......+...+..+.|+|||+. |+..+. ...|.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99999887654 8999998765321 11122233446899999999995 444433 34899
Q ss_pred EEE-cCC--ceeEEeecCCcCeEEEecccCCCccEEEEecc----CCeEEEEecCCCC--eeeeccCCCCceEEEEEccC
Q 001319 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd-~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~d 549 (1101)
+|| .++ ++...+..+...+....+ + +|+.|+..+. ++.|.+||+.+.. ....+..+...+..++++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 555 315666666655555433 4 5566666654 3459999988752 233333444456677776 4
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCee
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1101)
+..+++... ++...|++++. ++...+.+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 455555543 23334555565 35556666554344677888999988666432 457899999988873
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=5.5e-11 Score=129.54 Aligned_cols=248 Identities=11% Similarity=0.060 Sum_probs=164.6
Q ss_pred CCCcEEEEEEecCCceEEEE-------EeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 343 QGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llas-------g~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... . .....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~------------~~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C------------KPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E------------CCEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E------------ecccCCCCCCCceEEEe
Confidence 345678999999997 6666 56788999999887765320 0 00012345679999999
Q ss_pred cC-CCEEEEEECCCeEEEEeecCCccccc-ceeee-cccCcEEEEEEecCCCceEEEEecCC---------------ceE
Q 001319 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD---------------KLI 477 (1101)
Q Consensus 416 pd-g~~las~~~d~~i~vwd~~~~~~~~~-~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d---------------~~v 477 (1101)
++ |+++++. ..+.|.+||.+ ++.... ..... .....+.+++++++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 6655544 44479999988 653321 10001 1224588999999998 56655544 567
Q ss_pred EEEEcCCceeEEeecCCcCeEEEecc--cCCCccEE-EEeccCCeEEEEecC-CCC-----eeeeccCCC-CceEEEEEc
Q 001319 478 KVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFI-FSTAIDGKIKAWLYD-TMG-----SRVDYDAPG-HWCTTMLYS 547 (1101)
Q Consensus 478 ~iwd~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~l-~s~~~d~~i~~wd~~-~~~-----~~~~~~~~~-~~v~~~~~s 547 (1101)
..||..++... +..+......++++ .+++++.+ ++...++.|.+|+++ .+. ....+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 77774465433 33333456778886 11366555 444568999999976 332 112233332 567889999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE-eCCCcEEEEECCC
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDN 616 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 616 (1101)
++|+..++... ++.|.+||..+++....+..+.. .+..++++++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988877653 67899999988877777765543 68889999999966655 4668899999864
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=1e-10 Score=127.38 Aligned_cols=239 Identities=13% Similarity=0.136 Sum_probs=164.1
Q ss_pred CCEeEEEecCCCCeEEE-------Ec-CCeEEEEECCCceEEEEee----CCCCCeeEEEEecCC-CCEEEEEeCCCcEE
Q 001319 805 EAVPCIALSKNDSYVMS-------AT-GGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQD-NNIIAIGTEDSTIH 871 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~~-~~~la~g~~dg~v~ 871 (1101)
....+++|+++|.++++ +. ++.|.+||..+++...... ++...+..+++++ + ++++++.. .+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 34678999999988887 33 7899999988887653322 1446789999999 6 66555544 45799
Q ss_pred EEEeecceEEEe-ecc----CCCCeeEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCccccceEEeec
Q 001319 872 IYNVRVDEVKSK-LKG----HQKRITGLAFSTSLNILVSSGAD---------------AQLCVWSIDTWEKRKSVTIHIP 931 (1101)
Q Consensus 872 iwd~~~~~~~~~-~~~----h~~~V~~l~~s~d~~~l~s~s~D---------------g~v~lwd~~~~~~~~~~~~~~~ 931 (1101)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..|+.. ++...... ..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~- 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF- 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC-
Confidence 99988 765433 221 12458899999999988877655 456666655 33221111 10
Q ss_pred CCCCCCCcceEEEc----CCCCEEEEEe--CCeEEEEEcC-Cceee--eEeccCCCCC-CCEEEEEEccCCCEEEEEeCC
Q 001319 932 AGKTPTGDTRVQFN----ADQVRMLVVH--ETQLAIYDAS-KMERI--RQWTPQDALS-APISCAVYSCNSQLVFATFCD 1001 (1101)
Q Consensus 932 ~~~~~~~v~~~~~s----~d~~~l~~~~--d~~i~v~d~~-~~~~~--~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~d 1001 (1101)
.....++++ |+++.+.++. ++.|.+|+.. +++.. ..+.....+. ..+..++++++|+++++...+
T Consensus 172 -----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 172 -----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 345788999 9997766653 6899999976 44321 1111111113 568899999999988888788
Q ss_pred CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC-EEEEEECCCeEEEEeCCCC
Q 001319 1002 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1002 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~-~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
+.|.+||..+++....+.. +. ..+.+++|+| ++. ++++...++.|..|++...
T Consensus 247 ~~i~~~d~~~g~~~~~~~~----------~~--~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRC----------PF--EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TEEEEECTTCBSCSEEEEC----------SS--SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred CEEEEEcCCCCcEeEEEeC----------CC--CCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999999987776655542 11 3567899988 577 6666667789999998753
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.40 E-value=1.2e-09 Score=118.05 Aligned_cols=278 Identities=11% Similarity=0.059 Sum_probs=183.6
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
....+.++++.++|+..++.. .++.|.+||.. ++............+..+++.++++.+++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQH----KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEET----TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECCCCCEEEEcC----CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 345688999999999777654 26789999988 655442222222367889999999877777678899999987
Q ss_pred CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccC
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 696 (1101)
++.. .+........+..+++.++|+++++...++.|..++.. +.. . .+
T Consensus 92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~-~~---------------------------- 139 (300)
T 2qc5_A 92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y-EY---------------------------- 139 (300)
T ss_dssp SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E-EE----------------------------
T ss_pred CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E-Ec----------------------------
Confidence 5543 23222222367899999999887776667888888765 311 0 00
Q ss_pred CCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCC
Q 001319 697 TPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 776 (1101)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 776 (1101)
.++ .....+..+++.++|+..++...++.+..++..
T Consensus 140 --------------------------------~~~---~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--------- 175 (300)
T 2qc5_A 140 --------------------------------DLP---NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--------- 175 (300)
T ss_dssp --------------------------------ECS---STTCCEEEEEECTTSSEEEEETTTTEEEEECTT---------
T ss_pred --------------------------------cCC---CCCCCceeEEECCCCCEEEEecCCCeEEEECCC---------
Confidence 000 023356778888888855555556777777531
Q ss_pred eeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEE-eeCCCCCeeEEEEe
Q 001319 777 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT-FMSPPPASTFLAFH 854 (1101)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s 854 (1101)
+........ .....+.+++++++|.+.++.. .+.|.+||. +++.... +..+...+.+++++
T Consensus 176 --------------g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 176 --------------GKLEEYPLP--TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp --------------CCEEEEECS--STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred --------------CcEEEeeCC--CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 111111111 1345678999999998777766 678999998 5554433 33345678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeecceEEE-eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 855 PQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 855 ~~~~~~la~g~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+ ++++.++...++.|..|+. +++... .+......+.++++.++|+.+++.. . .|..+|.
T Consensus 239 ~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 239 K-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp S-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred C-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9 7887766666789999998 454332 2333456789999999998766555 4 6666664
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=3.1e-11 Score=133.49 Aligned_cols=272 Identities=8% Similarity=0.059 Sum_probs=182.0
Q ss_pred cCCceEEEEEecc----CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE----
Q 001319 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (1101)
Q Consensus 354 pdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~---- 425 (1101)
|++++++++...+ +.|.+.|..+++.+.. +.--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 4566666665544 7999999999887753 1111234 899999999998886
Q ss_pred ------CCCeEEEEeecCCcccccceeee--c---ccCcEEEEEEecCCCceEEEEec--CCceEEEEE-cCCceeEEee
Q 001319 426 ------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 426 ------~d~~i~vwd~~~~~~~~~~~~l~--~---h~~~V~~l~~s~d~~~~~l~s~~--~d~~v~iwd-~~~~~~~~~~ 491 (1101)
.++.|.++|..+++.+..+. +. . ....-..++|+|||++ ++.+. .++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 21 0 1123457899999995 44443 368999999 8888887776
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----eccCCCCc-eEEEEEccCCCEEEEeecCCCCCceE
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
-... ....|.+. ..+++.+.||.+.+.+..+.+... .+.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 3221 12223322 455666678887777774443331 11212222 124567899988777654 5689
Q ss_pred EEEeCCCCeeE--EEeccc---------CCcceEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCeeeEeecc
Q 001319 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.+.|...+... ..+... .......++++|+++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0001223789999998887642 35799999999999998875
Q ss_pred CCCCCCCCeeEEecCCC-EEEEEE-cCCcEEEEEcccc
Q 001319 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~~g~-~l~~~~-~d~~i~iwd~~~~ 661 (1101)
.. ....++|+|||+ +++++. .++.|.++|+.+.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 43 358999999999 888888 5899999999988
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.36 E-value=4.3e-10 Score=126.30 Aligned_cols=253 Identities=9% Similarity=0.011 Sum_probs=168.6
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC--cEEEEEeecceEE
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVK 881 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~~ 881 (1101)
.....++++++|+++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999999777766 68999999998877766554 33334 99999 888888888766 7888887765443
Q ss_pred Eee----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC-cceEEEcCCCCEEEEEe-
Q 001319 882 SKL----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 882 ~~~----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~- 955 (1101)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++........ ...+..... ...++|+|++..|.+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 22456788999999655666677788999999987653211000 011111111 13999999655555543
Q ss_pred -CCeEEEEEcCCceeeeEeccCC---C---------CCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCC
Q 001319 956 -ETQLAIYDASKMERIRQWTPQD---A---------LSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 956 -d~~i~v~d~~~~~~~~~~~~~~---~---------h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
++.|+.|+.+.. +..+.... + .-.....++++++|+++++-. .++.|+.|++.++.........
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 688999987643 22222211 0 023578999999999888877 8899999998888754433210
Q ss_pred Cc--CCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1022 TY--LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1022 ~~--~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.. .....-....-..+..+++++ ++.++++-..+++|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 00 000000011234578999999 5888888888999988775
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=1.4e-10 Score=126.43 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=136.5
Q ss_pred CCCEeEEEecCCCCeEEEEcCCeEEEEECCCce-----------EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEE
Q 001319 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~i 872 (1101)
...+..+++++...++++|+...+.+|++++.. ..... .+.. |+.++| ++.+|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 346889999999999999997788889876443 11222 2455 999999 56888888 8899999
Q ss_pred EEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 873 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 873 wd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
||+.+.........|..++.++.+.+.. +++++.||.|.+||+.++.... .. ..+++++|||+| ..+
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~-------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA-------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE-------ESEEEEEECSSE-EEE
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc-------CCceEEEEcCCc-eEE
Confidence 9998766555666788889988887653 8889999999999999876532 11 579999999999 444
Q ss_pred EEeCCeEEEEEcCCcee--eeEecc------CCCCCCCEEEEEEccCCCEEEE
Q 001319 953 VVHETQLAIYDASKMER--IRQWTP------QDALSAPISCAVYSCNSQLVFA 997 (1101)
Q Consensus 953 ~~~d~~i~v~d~~~~~~--~~~~~~------~~~h~~~v~~v~~s~dg~~l~s 997 (1101)
...|+.+++|+.+.++. ...+.. +.+|...|.+|.|.++++++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 46699999999988775 555522 1135789999999999999887
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.33 E-value=8.3e-10 Score=118.73 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=152.3
Q ss_pred CCEeEEEecCCCCeEEEE-c-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 805 EAVPCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
.-..+..|++++..|... . ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++...
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 345688999966554444 4 789999999887653 332 356799999999 7886554 4 5689999998876543
Q ss_pred eecc----CCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 883 KLKG----HQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 883 ~~~~----h~~~V~~l~~s~d~~~l~s~s~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
.... ....+.+++++|+|+++++...+ ..-.+|.+............. .....++|+||++
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg~ 161 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDHK 161 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTSC
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCCC
Confidence 3221 12458899999999977755322 334666665432211111111 3457899999999
Q ss_pred EEEEEe--CCeEEEEEc--CCceee--eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCc
Q 001319 950 RMLVVH--ETQLAIYDA--SKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1023 (1101)
Q Consensus 950 ~l~~~~--d~~i~v~d~--~~~~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1023 (1101)
.|.+++ ++.|.+|++ .++... ..+.....+......++++++|++.++...++.|.+||.++++.+..+..
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--- 238 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--- 238 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC---
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---
Confidence 887754 688999987 455431 11211111145678999999999888888888999999999998887763
Q ss_pred CCCcccCCCCccceEEEEEe-cCCCCEEEEEECC
Q 001319 1024 LSPSVLNGSQTVYPLVVAAH-PLEPNQFAIGLTD 1056 (1101)
Q Consensus 1024 ~~~~~~~h~~~~~~~~l~~~-p~d~~~l~s~~~D 1056 (1101)
+ ...+++++|. |+...++++...+
T Consensus 239 -------p--~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 239 -------P--VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -------S--SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -------C--CCCceEEEEeCCCCCEEEEEcCCc
Confidence 1 1356799998 7434455555443
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=3.6e-10 Score=126.90 Aligned_cols=238 Identities=11% Similarity=0.012 Sum_probs=159.6
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
.....|+|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999998 777777778999999987765431 111 22233 9999999999998
Q ss_pred ECCC--eEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe-----ecCCc
Q 001319 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-----EGHEA 495 (1101)
Q Consensus 425 ~~d~--~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-----~~h~~ 495 (1101)
..++ .|.+|+..++........+.. ....+.+++++|++.. |+.+..++.|+.|| .++. ...+ .++..
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLG 265 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCC-EEEEEECCCCSCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCC-EEEEecccccCCCC
Confidence 8766 789999877654332211112 4567889999995553 33366688999999 4444 3333 22222
Q ss_pred Ce--EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC---------------CCceEEEEEccCCCEEEEeec
Q 001319 496 PV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---------------GHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 496 ~v--~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.- ..++|++. ++.++++-..++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 266 ~~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~- 341 (409)
T 3hrp_A 266 TNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG- 341 (409)
T ss_dssp CSSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-
T ss_pred CCccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-
Confidence 22 38898774 3566777777899999987643 2222111 13478999999999666643
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccC--------------CcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+++.|+.|+..++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 --~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 --FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp --TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred --CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02778999998887754 333320 124667999999776666677788887765
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=3.8e-10 Score=137.01 Aligned_cols=250 Identities=11% Similarity=0.038 Sum_probs=162.8
Q ss_pred CCCcEEEEEEecCCceEEEEE----eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
|...+..++|||||++++.+. +....|++||+.+|+.+.. .+ +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PL--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EE--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------cc--CCceeccEEEe-CC
Confidence 445789999999999764443 3335799999999886431 01 11113578999 99
Q ss_pred CEEEEEECCC-------------eEEEEeecCCcccc-cceeeec-ccCcEEEEEEecCCCceEEEEec---CCceEEEE
Q 001319 419 NYVGVAFTKH-------------LIQLYSYAGSNDLR-QHSQIDA-HVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVW 480 (1101)
Q Consensus 419 ~~las~~~d~-------------~i~vwd~~~~~~~~-~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~---~d~~v~iw 480 (1101)
+.|+.++.+. .|++|++.++..-. .+..... |...+..+.|+|||+++ +++.+ .+..|.+|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998874 39999998765321 1112233 45568899999999963 33332 23589999
Q ss_pred E-cCCc-eeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCe--eeeccCCCCceEEEEEccCCCEE
Q 001319 481 E-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 481 d-~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
| .++. ....+..+....... +.+. ++.+++.+..+ +.|..|++.+... ...+..+...+. .|++++++|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4443 556666666665554 3333 23444555443 6799999987654 123344444444 899999998
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC----CcEEEEECCCCeee
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (1101)
+.... .++...|++||+..+. .+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 87764 2334579999988554 444443332346667778888877765544 88999999877643
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=9.1e-10 Score=118.39 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=155.6
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
..-..+..|+|+++.|+++...++.|..||..+++... + .....+.+++++|+|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999877788888888999999998765421 1 13457999999999995554
Q ss_pred EECCCeEEEEeecCCcccccceeee-c-ccCcEEEEEEecCCCceEEEEe-cC----------CceEEEEEcCCceeEEe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTC-GD----------DKLIKVWELSGRKLFNF 490 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~~~l~s~-~~----------d~~v~iwd~~~~~~~~~ 490 (1101)
. ++.|.+||.++++... +.... + ....+++++++|+|+ ++++. .. .+.|..++..++... +
T Consensus 71 -~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp -E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred -E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 4 5679999998876422 11111 1 124588999999998 44443 21 234444444454433 3
Q ss_pred ecCCcCeEEEecccCCCccEE-EEeccCCeEEEEecC--CCCee-----eeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 491 EGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR-----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33344568899977 55555 566678899999974 33221 122222346789999999987776653
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEeC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1101)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999988887644 68889998 88888777654
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=6.7e-10 Score=120.05 Aligned_cols=229 Identities=11% Similarity=0.027 Sum_probs=154.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEE
Confidence 355678899999999988888888899999987 443211 33355678999999999977
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecc-cCcEEEEEEecCCCceEEEE----ecC-------------CceEEEEE-c
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKVWE-L 482 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s----~~~-------------d~~v~iwd-~ 482 (1101)
++...++.|.+|+.+ ++.........+. ...++++++.++|+ +.+| |.. .+.|..|| .
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 666566789999986 4422111111111 23467899999998 6665 332 35677888 4
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEE
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
+++..... .......++|++ +++.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 56544332 344567889977 56767666554 7899999875431 11112223345678999999955
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1101)
++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++
T Consensus 254 v~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 254 SSS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ECC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE
T ss_pred Eec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe
Confidence 543 1 3 4999998 567777776544 477789999999998888764
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=1.9e-10 Score=126.67 Aligned_cols=270 Identities=12% Similarity=0.024 Sum_probs=171.2
Q ss_pred CcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+..|+++|+|+ ++++.. .++.++||.+.+++.. ++.-|. ....+|-..+..++|+|+|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 556643 2343677777644432 111111 01234667899999999998666
Q ss_pred EEEC-----CCeEEEEeecCCcccccceeee----cccCcEEEEEEecCCCceEEEEec---CCceEEEEE-cCCceeEE
Q 001319 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 423 s~~~-----d~~i~vwd~~~~~~~~~~~~l~----~h~~~V~~l~~s~d~~~~~l~s~~---~d~~v~iwd-~~~~~~~~ 489 (1101)
+-.. ++.|.+||+++++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+|| .+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 5543 578999999988755422 121 22345789999987654 455555 678999999 77877666
Q ss_pred eecCCcCeE-EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 490 ~~~h~~~v~-~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
+.+|..... ...+.. +|..+.+.+.++.++.|. ..+..++++|||+.|+.+.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 665533211 122322 456677777788877663 13678999999998888754 1335555
Q ss_pred EeCC---CCe-----eEE--EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 110 000 1112222 3445899999988888888999999998566644333221 12346789999
Q ss_pred cCCCEEEEEEcCC
Q 001319 639 KEGNLLAVTTADN 651 (1101)
Q Consensus 639 ~~g~~l~~~~~d~ 651 (1101)
++|.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9888777665443
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=1.2e-09 Score=130.99 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=136.1
Q ss_pred CCeEEEEECCCceEEEEeeCCCCC--------------------------------eeEEEEecCCCCEEEEEeCCC---
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPA--------------------------------STFLAFHPQDNNIIAIGTEDS--- 868 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~~~~~la~g~~dg--- 868 (1101)
+|.|+.||..+|+.+..+...... ...+++++ ++.+|++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 477888888888888776542211 13578888 677888887664
Q ss_pred ----------------cEEEEEeecceEEEeecc--CC-------CCeeEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 001319 869 ----------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSL---NILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 869 ----------------~v~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~d~---~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998877653 21 122223344477 68999999999999999999
Q ss_pred ccccceEEeec--------CCC--------------------C-CCCcceEEEcCCCCEEEEEe----------------
Q 001319 921 EKRKSVTIHIP--------AGK--------------------T-PTGDTRVQFNADQVRMLVVH---------------- 955 (1101)
Q Consensus 921 ~~~~~~~~~~~--------~~~--------------------~-~~~v~~~~~s~d~~~l~~~~---------------- 955 (1101)
+.+........ .+. . ...-..++|+|++.++++..
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 87644332100 000 0 00112678999988887732
Q ss_pred ----------------------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 956 ----------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 956 ----------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
.+.|..||+.+++.+..+.. ..++....++.+|.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 16799999999998877764 3344455567788899999999999999
Q ss_pred eCCCCceeEeeCC
Q 001319 1008 DADTLRLRCYIAP 1020 (1101)
Q Consensus 1008 d~~~~~~~~~~~~ 1020 (1101)
|..+|+.+..+..
T Consensus 504 D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 504 HAATGEKLWEAPT 516 (677)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCceeeeeeC
Confidence 9999999998873
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=9.8e-11 Score=127.52 Aligned_cols=196 Identities=10% Similarity=0.036 Sum_probs=129.4
Q ss_pred eEEEecCCCCeEEEEc---CCeEEE--EECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-----
Q 001319 808 PCIALSKNDSYVMSAT---GGKISL--FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----- 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~----- 877 (1101)
..++++|||++++++. ++.+.+ +|+.+ +.++... +. ..+.|++...+++.+.||++.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3588999999888775 356888 88877 4444321 11 223343455666777899999999887
Q ss_pred ceEEE----eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEee------cCCCCCCCcceEEEcCC
Q 001319 878 DEVKS----KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI------PAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 878 ~~~~~----~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~d 947 (1101)
++... .+.-...+. + ++++..++..+. +.|.+.|+.+........+.. ..+..+.....++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 44331 111112333 3 666666666666 899999997643211111110 01111122334789999
Q ss_pred CCEEEEE-e-C--------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE-EEEEe-CCCcEEEEeCCCCcee
Q 001319 948 QVRMLVV-H-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL-VFATF-CDGNIGVFDADTLRLR 1015 (1101)
Q Consensus 948 ~~~l~~~-~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~~-~dg~i~vwd~~~~~~~ 1015 (1101)
++.+.++ . . +.+.++|+.+++.+..+.. ......++|++||++ +++.. .++.|.|+|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988874 3 2 3677999999999988876 346889999999985 45555 5999999999999999
Q ss_pred EeeC
Q 001319 1016 CYIA 1019 (1101)
Q Consensus 1016 ~~~~ 1019 (1101)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8886
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=1.2e-10 Score=128.25 Aligned_cols=271 Identities=8% Similarity=0.029 Sum_probs=178.7
Q ss_pred ccEEEEEeecCcccEEEeec--CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 738 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~--dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
..+..++++++|+.+++... ++.+++|.+.. ++..... .|.. ....+...+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~p---~~~~----------~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPFP---PQSG----------NAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEESC---CCCS----------SCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecCC---Cccc----------CcccceeEeeEEEEcCC
Confidence 56789999999987777542 34467777641 1111000 0000 01125567899999999
Q ss_pred CCeEEEEc------CCeEEEEECCCceEEEEeeCC------CCCeeEEEEecCCCCEEEEEe---CCCcEEEEEeecceE
Q 001319 816 DSYVMSAT------GGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEV 880 (1101)
Q Consensus 816 g~~la~~~------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~---~dg~v~iwd~~~~~~ 880 (1101)
|++.++.. +++|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98776653 478999999999977766532 234688999983455555555 678999999998888
Q ss_pred EEeeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CC
Q 001319 881 KSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 957 (1101)
Q Consensus 881 ~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~ 957 (1101)
...+.+|..... ...+.++|..+.+.+.|+.++.|. ..+..++|+|||+.|.++. ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCC
Confidence 777766533211 145566787888888888876663 2345799999999888865 33
Q ss_pred eEEEEEcCC---ce-----e---eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 958 QLAIYDASK---ME-----R---IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 958 ~i~v~d~~~---~~-----~---~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
.+..++... +. . +..+ .. ......++++++|.++++...++.|.+||..+++......
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~------- 286 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERY-SE---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT------- 286 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEE-EE---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEec-cc---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------
Confidence 555554321 10 0 0111 11 2345679999999999999899999999996676433332
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEe
Q 001319 1027 SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1063 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd 1063 (1101)
......+.++++.+ ++.++++.+..+.+.+|.
T Consensus 287 ----~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 287 ----DEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ----CGGGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ----CCceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 11234678999999 688888887666665554
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=3.7e-10 Score=137.05 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=158.3
Q ss_pred ccCCccEEEEEEccCCCEEEEEE-----CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~-- 475 (1101)
.+|...+..++|||||++||.+. .+..|++||+++|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 34666899999999999999643 235799999999985432 1111 113578999 999 455555553
Q ss_pred -----------eEEEEE-cCCc----eeEEeec-CCcCeEEEecccCCCccEEEEecc----CCeEEEEecCCCC-eeee
Q 001319 476 -----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVD 533 (1101)
Q Consensus 476 -----------~v~iwd-~~~~----~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~~ 533 (1101)
.|++|+ -++. ++..... |...+..+.+++ ||++|+.... +..|.+||+.++. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 4443 2333333 444567788876 6677654332 2589999988764 3334
Q ss_pred ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCCCEEEEEeC-CC--c
Q 001319 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--Q 608 (1101)
Q Consensus 534 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~ 608 (1101)
+..+....... ++++|..++..+........|..+|+.++.. .+.+..+....+ .|++++++|+.... ++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887776654322357899999988754 344555544333 88999998888664 43 6
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC----CcEEEEEcccc
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIG 661 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----~~i~iwd~~~~ 661 (1101)
|++|++..+. ...+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8999987544 44444322 2245667778888877766554 78999998766
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=4.5e-09 Score=114.50 Aligned_cols=224 Identities=14% Similarity=0.046 Sum_probs=150.6
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
-..+.+|+|+++.+++++..++.|..||..+++... +. ....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 457889999877788888888999999998765321 11 23579999999999987754
Q ss_pred CCCeEEEEeecCCcccccceeee-c-ccCcEEEEEEecCCCceEEEEecC------CceEEEEEcCCceeEEeecCCcCe
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~h~~~v 497 (1101)
.+ .|.+||..+++... +.... + ....+++++++|+|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 44 49999998876432 11111 1 124689999999998 4444331 24555566 5543 3333333456
Q ss_pred EEEecccCCCccEE-EEeccCCeEEEEecC--CC-Ce-----eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 498 YSICPHHKENIQFI-FSTAIDGKIKAWLYD--TM-GS-----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
..++|++ +++.+ ++.+.++.|.+|+++ ++ .. ...+......+..++++++|++.++... .+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888876 55555 455567899999986 43 21 1122223446788999999987776542 568999
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEeC
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1101)
||. +++.+..+..... .+.+++|+ ++++.|++++.
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 998 5777777765543 68889998 88887766553
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=4e-09 Score=126.67 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=126.5
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccC----------cE-EEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG----------AV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~----------~V-~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
+..|++++.++.|.-+|.++|+.+-.. ..+.. .+ ..++. ++. .++.++.|+.|..+| .+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 566777778888999999999865432 11111 01 11222 244 577788899999999 8999
Q ss_pred eeEEeecC--CcCeEEEecccC-CCccEEEEec------cCCeEEEEecCCCCeeeeccCCC------------------
Q 001319 486 KLFNFEGH--EAPVYSICPHHK-ENIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPG------------------ 538 (1101)
Q Consensus 486 ~~~~~~~h--~~~v~~v~~~~~-~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~------------------ 538 (1101)
.+..+... ......+...|. .++ .++.++ .++.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98777642 111111111110 033 444443 37899999999999887654210
Q ss_pred -------------CceEEEEEccCCCEEEEeecCCC-----------CC----ceEEEEeCCCCeeEEEecccCC-----
Q 001319 539 -------------HWCTTMLYSADGSRLFSCGTSKD-----------GD----SFLVEWNESEGTIKRTYAGFRK----- 585 (1101)
Q Consensus 539 -------------~~v~~~~~s~d~~~l~~~~~~~~-----------~~----~~i~iwd~~~~~~~~~~~~~~~----- 585 (1101)
.....++++|++..++.+..+.. ++ +.|..+|..+|+.+-.+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788898888888764210 01 1499999999999887765311
Q ss_pred ---cceEEEEEeCCCC---EEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 586 ---KSNGVVQFDTTQN---HFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 586 ---~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
..........+|+ .++.++.+|.++++|..+|+.+.....
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 0111122223554 688889999999999999999877654
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=2.6e-09 Score=128.39 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=132.6
Q ss_pred CCeEEEEECCCceEEEEeeCCC-------------------------------CCeeEEEEecCCCCEEEEEeCCCc---
Q 001319 824 GGKISLFNMMTFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGTEDST--- 869 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg~--- 869 (1101)
+|.|+.||..+|+.+..+.... .....++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888777665210 1113578888 7788888887764
Q ss_pred ----------------EEEEEeecceEEEeecc--CC-------CCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCc
Q 001319 870 ----------------IHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 870 ----------------v~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999877653 21 1222222233565 78899999999999999998
Q ss_pred cccceEEee-----------------------c-CCC---------CCCCcceEEEcCCCCEEEEEe-------------
Q 001319 922 KRKSVTIHI-----------------------P-AGK---------TPTGDTRVQFNADQVRMLVVH------------- 955 (1101)
Q Consensus 922 ~~~~~~~~~-----------------------~-~~~---------~~~~v~~~~~s~d~~~l~~~~------------- 955 (1101)
.+....... . .+. -...-..++|+|+..++.+..
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 763221110 0 000 001123478999888877631
Q ss_pred ---------------------------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 956 ---------------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 956 ---------------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
++.|..||+.+++.+.....+ .++..-.++..|.++++|+.||
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCC
Confidence 267999999999988877653 2233345566788999999999
Q ss_pred cEEEEeCCCCceeEeeCC
Q 001319 1003 NIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++.||.++|+.+..+..
T Consensus 497 ~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCCCccceeeeC
Confidence 999999999999988763
No 228
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.21 E-value=2.5e-05 Score=91.93 Aligned_cols=533 Identities=10% Similarity=-0.006 Sum_probs=283.9
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeec-CCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-h~~~v~ 498 (1101)
+|+.+ ....|+..++++...... ..+ ..-..+..++|.+.+.. ++++-..++.|..++.+|..+..+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVA-IPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEE-CCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceE-EEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 456799999987543211 112 22346889999997765 56676778899999966654444332 223466
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+++.+. .+++.++-...+.|.+.+++.................+++.|...+|...-. ...+.|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3456666667789999998765544444344456789999996666665432 125678888876554433
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEE
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKIL 656 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iw 656 (1101)
.... ......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. + .|+.+. ..+.|...
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~-~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-D-YIYWTDWSRRSIERA 233 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-T-EEEEEETTTTEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-C-EEEEecCCCCEEEEE
Confidence 3332 22567799999888877765 567899999875443 223221 12335677754 3 455444 47788888
Q ss_pred EccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCC
Q 001319 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDT 736 (1101)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (1101)
|..++.. ...+..... .+..-..+.+..+. ..+.|......+ . .+-.....+......-+.....
T Consensus 234 dk~tg~~-~~~l~~~~~----~p~~i~v~~~~~q~-----~~n~C~~~ng~C---~--~~C~~~~~~~~~C~C~~g~~l~ 298 (628)
T 4a0p_A 234 NKTSGQN-RTIIQGHLD----YVMDILVFHSSRQS-----GWNECASSNGHC---S--HLCLAVPVGGFVCGCPAHYSLN 298 (628)
T ss_dssp ETTTCCS-CEEEECSCC----SCCEEEEECGGGSC-----CCCTTTTTGGGC---S--SEEEEETTTEEEEECSTTCEEC
T ss_pred ECCCCCc-eEEEecCCC----Ccceeeeeeecccc-----cceEeccCCCCc---c--hhhhcCCCCCeeEEcCCCcEec
Confidence 8766632 222221110 11111122222111 011110000000 0 0000000010110000000000
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
....++.. + ...++.+ ....|+-..+... ......... ..-..+..++|.+.+
T Consensus 299 ~d~~~C~~--~-~~~Ll~s-~~~~i~~i~l~~~--------------------~~~~~~l~~---~~~~~~~~ld~d~~~ 351 (628)
T 4a0p_A 299 ADNRTCSA--P-TTFLLFS-QKSAINRMVIDEQ--------------------QSPDIILPI---HSLRNVRAIDYDPLD 351 (628)
T ss_dssp TTSSCEEC--C-SSEEEEE-ETTEEEEECCCTT--------------------CCCCEECCC---TTCSCEEEEEEETTT
T ss_pred ccCCcCcc--c-cceeeee-ccceEEEEecccc--------------------cCceEEEEe---hhcCCceEEEEecCC
Confidence 00001110 1 1122222 2223322221100 000000001 123457889999877
Q ss_pred CeEEEEc--CCeEEEEECCCceEEEEeeC------CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee-ccC
Q 001319 817 SYVMSAT--GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGH 887 (1101)
Q Consensus 817 ~~la~~~--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~-~~h 887 (1101)
..|..++ .+.|+.++.........+.. ....+..+++....+.+..+-+..+.|.+.++. |+....+ ...
T Consensus 352 ~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~ 430 (628)
T 4a0p_A 352 KQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGE 430 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECT
T ss_pred CeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCC
Confidence 7777665 57899998765433333322 234678999988345566666678899999986 4444333 334
Q ss_pred CCCeeEEEEcCC-CCEEEEEeCCC--cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEE
Q 001319 888 QKRITGLAFSTS-LNILVSSGADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIY 962 (1101)
Q Consensus 888 ~~~V~~l~~s~d-~~~l~s~s~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~ 962 (1101)
.....+|++.|. |.++++-.... .|...+++..... .. .. .. ......+++++++..|..++ .+.|..+
T Consensus 431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~l-~~---~~-l~~P~gla~D~~~~~LYw~D~~~~~I~~~ 504 (628)
T 4a0p_A 431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-VL-FF---SG-LSKPIALALDSRLGKLFWADSDLRRIESS 504 (628)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-EE-EC---SS-CSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-EE-Ee---cc-CCCccEEEEeCCCCEEEEEeCCCCEEEEE
Confidence 567899999994 44444433222 4666666543221 11 11 11 14568899999988888865 5789999
Q ss_pred EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 963 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 963 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
+++.... ..+.... ......+++.. +....+-...+.|...|..+|+....+.
T Consensus 505 ~~dG~~r-~~~~~~~--~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 505 DLSGANR-IVLEDSN--ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp ETTSCSC-EEEECSS--CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred eCCCCce-EEEEcCC--CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 9865433 3332111 34456777654 4444455566788888888777555444
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=1.3e-08 Score=110.98 Aligned_cols=222 Identities=9% Similarity=0.043 Sum_probs=144.9
Q ss_pred EeEEEecCCCCe-EEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 807 VPCIALSKNDSY-VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 807 v~~~~~s~dg~~-la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
..+.+|+|++.. +++.. ++.|..||..+++... +. ....+.++++++ +++++++. .+ .|++||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 567889998554 44444 6889999998876543 32 346799999999 78777654 44 4999998887654322
Q ss_pred cc---C-CCCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 885 KG---H-QKRITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 885 ~~---h-~~~V~~l~~s~d~~~l~s~s~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
.. . ...+.+++++|+|+++++... .+.|..++ +++... ..... .....++|+||++.++++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~------~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI------SIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE------SSEEEEEECTTSCEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC------cccCCeEEcCCCCEEEEE
Confidence 21 1 245899999999997776542 23455555 433221 11110 345689999999988775
Q ss_pred e--CCeEEEEEcC--Cc-eee--eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCc
Q 001319 955 H--ETQLAIYDAS--KM-ERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1027 (1101)
Q Consensus 955 ~--d~~i~v~d~~--~~-~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1027 (1101)
+ ++.|.+|+.. ++ ... ..+.........+..++++++|.++++...++.|.+||. +++.+..+..
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~------- 268 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV------- 268 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-------
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-------
Confidence 4 6789999986 55 321 112111111456788999999998887777789999998 5776665542
Q ss_pred ccCCCCccceEEEEEe-cCCCCEE-EEEECC
Q 001319 1028 VLNGSQTVYPLVVAAH-PLEPNQF-AIGLTD 1056 (1101)
Q Consensus 1028 ~~~h~~~~~~~~l~~~-p~d~~~l-~s~~~D 1056 (1101)
+. ..+.+++|. + ++..| ++...+
T Consensus 269 ---~~--~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 269 ---PG--KQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp ---SC--SBEEEEEEEST-TSCEEEEEEBCT
T ss_pred ---CC--CCcEEEEEecC-CCCEEEEEecCC
Confidence 12 246789998 7 55544 555444
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=1.8e-08 Score=112.53 Aligned_cols=297 Identities=11% Similarity=0.090 Sum_probs=181.2
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCC---------cCeE-EEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHE---------APVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~---------~~v~-~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
.++.++.++.|..+| .+|+.+..+.... ..+. .+.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 477778889999999 7899886665421 2222 2222 23578888899999999999999887665
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc----eEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
............ + ..+++++. ++.|..+|..+|+.+..+....... ....... +..+++++.++.++.
T Consensus 131 ~~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 543322222222 3 35555543 7889999999999887766532210 0112222 457888888999999
Q ss_pred EECCCCeeeEeeccCCCCC-----CCCeeEEec--CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 612 WDMDNVNILTSTDAEGGLP-----NLPRLRFSK--EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~-----~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
+|..+++.+.......... .+..+...| .+..+++++.++.+..+|..++..
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--------------------- 261 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--------------------- 261 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE---------------------
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE---------------------
Confidence 9999999887765432100 000010111 234555555566666666544411
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
+|
T Consensus 262 ------------------------------------------------------------------------------~w 263 (376)
T 3q7m_A 262 ------------------------------------------------------------------------------MW 263 (376)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 01
Q ss_pred EecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC-
Q 001319 765 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS- 843 (1101)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~- 843 (1101)
... ......+... ++.+++...++.+..+|..+++.+.....
T Consensus 264 ~~~------------------------------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~ 306 (376)
T 3q7m_A 264 KRE------------------------------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDL 306 (376)
T ss_dssp EEC------------------------------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred ecc------------------------------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence 100 0011122222 33334444478899999999988877662
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE-EEEcCCCCEEEEEeCCCcEEEEE
Q 001319 844 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
....+...... +..|++++.+|.|+++|..+++.+.........+.. ... .+..|+.++.+|.|..|+
T Consensus 307 ~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 307 LHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 22233444443 356778899999999999999988777653344332 222 245788899999999887
No 231
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=3.4e-10 Score=123.34 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=132.8
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.+..+++++... ++++|+.+ .+++|++.......... ...++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~---------~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD---------STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS---------SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc---------cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 56777777 56669976543111000 00011111233566 999999 99999999
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEeccc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~ 504 (1101)
.++.|++||+.+..... ....|..+|.++.+.+. -+++++.||.|.+|| .++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998865333 45677888988887755 277788999999999 5565543 456899999988
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCe--eeec------c---CCCCceEEEEEccCCCEEEEeec
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+| ++.|..||++++|+.+.... ..++ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 67899999999998877664 4344 2 35678999999999999887543
No 232
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.18 E-value=1.2e-05 Score=94.67 Aligned_cols=526 Identities=8% Similarity=-0.002 Sum_probs=268.5
Q ss_pred CCCeEEEEeecCCc-ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCce--eEEeecCCcCeEEEec
Q 001319 426 TKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICP 502 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~h~~~v~~v~~ 502 (1101)
....|+..|+.+.. ... .+.........++|++.+.. ++++-...+.|..++.+|.. ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34568888887642 111 12233445789999997775 55565667889888855542 2233333356788888
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-. ...+.|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCceEEEEeC
Confidence 654 3356666677889999998766544444344456789999997666665432 1245677777654333222222
Q ss_pred cCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE-EcCCcEEEEEccc
Q 001319 583 FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAI 660 (1101)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~ 660 (1101)
.-.....++++++++.|+.+. ..+.|...|+............ ......+++..+ .|+.+ ...+.|...|..+
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED--ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSS
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC--EEEEecCCCCEEEEEECCC
Confidence 223567799999877777765 5678999998764443332211 112357777654 45544 4567888888877
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC-CCeEEEEcCCCCCCccc
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS-GQCRLVTMPESTDTSSK 739 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 739 (1101)
+.. ...+.... ..+..-..+++..+... .+.|......+ . .+-..... .......-+...-....
T Consensus 244 g~~-~~~i~~~~----~~p~~i~v~~~~~qp~~----~n~C~~~ng~C---s--~lCl~~~~~~~~~C~C~~g~~l~~d~ 309 (619)
T 3s94_A 244 GEG-LREIHSDI----FSPMDIHAFSQQRQPNA----TNPCGIDNGGC---S--HLCLMSPVKPFYQCACPTGVKLLENG 309 (619)
T ss_dssp CCC-CEECCSCC----CCCSEEEECCGGGSCCC----CCTTTTTGGGC---S--SEEEECSSTTSEEEECCTTCCBCTTS
T ss_pred Ccc-cEEEecCC----CCCcEEEEEccccCCCc----cccccCCCCcc---c--ceEECCCCCCCceEeCCchheecccC
Confidence 632 22222111 01111112222211100 00010000000 0 00000000 00000000000000000
Q ss_pred EEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeE
Q 001319 740 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 819 (1101)
Q Consensus 740 i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 819 (1101)
.++. +....++..+..+.|+..++..... ......+ ..-..+.+++|.+.+..|
T Consensus 310 ~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~~~~~~~---~~l~~~~~ld~d~~~~~l 363 (619)
T 3s94_A 310 KTCK---DGATELLLLARRTDLRRISLDTPDF--------------------TDIVLQL---EDIRHAIAIDYDPVEGYI 363 (619)
T ss_dssp SCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------CCEECCC---SCCSSEEEEEEETTTTEE
T ss_pred cccC---CCCceEEEEEcccceEEEecCCCcc--------------------ceeEEec---cccCccEEEEEEcCCCeE
Confidence 0000 0011122222233444333321110 0000001 123457789999866666
Q ss_pred EEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 820 MSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 820 a~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
..++ .+.|+.+++........+.........+++...++++.++-...+.|.+.++........+...-....+|++.
T Consensus 364 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 364 YWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEE
T ss_pred EEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEE
Confidence 5554 67899999876544444443345677899986355666666677899999887543222223344568999999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCceeeeEe
Q 001319 898 TSLNILVSSGA--DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 898 ~d~~~l~s~s~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~ 973 (1101)
|....|..+.. ...|...+++..... . +- .. .......+++++++..|..++ .+.|..++++........
T Consensus 444 p~~G~ly~tD~g~~~~I~r~~~dG~~~~-~--l~--~~-~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~ 517 (619)
T 3s94_A 444 PMVGYMYWTDWGEIPKIERAALDGSDRV-V--LV--NT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517 (619)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCE-E--EE--CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred cCCCcEEEecCCCCCEEEEEccCCCccE-E--EE--eC-CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence 97555554432 356777777653321 1 11 11 115677899999888888765 568888988654432222
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCce
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg~i~vwd~~~~~~ 1014 (1101)
...-.|. ..+++..+ +|+. -...+.|...|..+|..
T Consensus 518 ~~~l~~P---~glav~~~--~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 518 EDKIPHI---FGFTLLGD--YVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp ECCCCSS---CCEEEETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred ccCCCCc---EEEEEECC--EEEEeecCCCeEEEEEcCCCce
Confidence 2221122 34454332 4444 44566787778777743
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.17 E-value=5.2e-09 Score=112.96 Aligned_cols=232 Identities=12% Similarity=0.070 Sum_probs=152.4
Q ss_pred ccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 403 KDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|+
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSD 113 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEEC
Confidence 33455678899999999 5556667889999988 443 22 3445667899999999998 566666668899999
Q ss_pred cCCceeEEeecC-----CcCeEEEecccCCCccEEEE----ecc-------------CCeEEEEecCCCCeeeeccCCCC
Q 001319 482 LSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1101)
Q Consensus 482 ~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~ 539 (1101)
.+|+.. .+..+ ...+..+++.+ +|.+.++ |.. .+.|..||..+++..... ...
T Consensus 114 ~~g~~~-~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 114 ADGQAH-LLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp TTSCEE-EEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCCCEE-EEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 556543 22211 12356778765 6677775 332 245667766555443332 334
Q ss_pred ceEEEEEccCCCEEEEeecCC--CCCceEEEEeCCCCeeE--EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 540 WCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
....++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+ |.++..+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-
Confidence 567899999999887765310 01268999998765421 122111122345588999998 4444444 4999998
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
.++.+..+.... .+..++|+++++.|++++.++.
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 566777766543 4789999999999988887643
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=8.2e-10 Score=120.22 Aligned_cols=266 Identities=6% Similarity=-0.080 Sum_probs=167.6
Q ss_pred eEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE--------
Q 001319 358 TLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-------- 425 (1101)
Q Consensus 358 ~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-------- 425 (1101)
+++++...++ .|.+.|..+++.+.. +-.+. .+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3555655555 888999999888753 12222 34 799999999999986
Q ss_pred --CCCeEEEEeecCCcccccceeeecc-----cCcEEEEEEecCCCceEEEEec--CCceEEE--EE-cCCceeEEeecC
Q 001319 426 --TKHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCG--DDKLIKV--WE-LSGRKLFNFEGH 493 (1101)
Q Consensus 426 --~d~~i~vwd~~~~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~~~l~s~~--~d~~v~i--wd-~~~~~~~~~~~h 493 (1101)
.++.|.+||..+++.+..+. +.+. ......++|+|||++ ++.+. .+..|.+ +| .+ +..+.-.
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998776432 1100 123567999999995 44443 3567888 99 44 4444311
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCC-----CCeee----eccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
+. +.+.+.+. ..+++.+.|+.+.+.++++ ++... .+.....+. . ++++..++..+. +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 11 12233333 3455667788888888776 22111 011112222 3 566666665542 5
Q ss_pred eEEEEeCCCCe--eEEEeccc------CC---cceEEEEEeCCCCEEEEEeC---------CCcEEEEECCCCeeeEeec
Q 001319 565 FLVEWNESEGT--IKRTYAGF------RK---KSNGVVQFDTTQNHFLAVGE---------DSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 565 ~i~iwd~~~~~--~~~~~~~~------~~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 624 (1101)
.+.+.|..++. .+..+... .. .....++++|++++++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888886532 23322111 00 01222689999999887543 2356699999999988887
Q ss_pred cCCCCCCCCeeEEecCCCE-EEEEE-cCCcEEEEEccccccccccc
Q 001319 625 AEGGLPNLPRLRFSKEGNL-LAVTT-ADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~-l~~~~-~d~~i~iwd~~~~~~~~~~~ 668 (1101)
... ....++|+|||+. +++.. .++.|.++|+.+. +.++.+
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I 353 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEE
Confidence 544 3689999999984 55555 4899999999987 444444
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=1.6e-08 Score=121.28 Aligned_cols=233 Identities=10% Similarity=0.079 Sum_probs=148.1
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeeccc---------CcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV---------GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~---------~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~ 487 (1101)
+..|++++.++.|.-+|.++|+.+-... ..... .....+++ ++. .++.++.|+.|..+| .+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~a~--~~~--~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVAL--WKG--KVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCccccccccccCCCCCceE--ECC--EEEEEcCCCEEEEEECCCCCEE
Confidence 5566677778889999999887654221 11100 00112333 344 577788899999999 899999
Q ss_pred EEeecC-C----cCeEEEecccCCCccEEEEecc------CCeEEEEecCCCCeeeeccCCCCc----------------
Q 001319 488 FNFEGH-E----APVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHW---------------- 540 (1101)
Q Consensus 488 ~~~~~h-~----~~v~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~---------------- 540 (1101)
..+..+ . ..+.+ .|.-.+..++.++. ++.|+.||..+++.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~---~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITG---APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEETTTTCCSSCBCCS---CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeecCCcCcCcCccccc---CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 888754 2 11111 11111235555543 799999999999988766432211
Q ss_pred ----------------eEEEEEccCCCEEEEeecCCC-----------CC----ceEEEEeCCCCeeEEEecccCC----
Q 001319 541 ----------------CTTMLYSADGSRLFSCGTSKD-----------GD----SFLVEWNESEGTIKRTYAGFRK---- 585 (1101)
Q Consensus 541 ----------------v~~~~~s~d~~~l~~~~~~~~-----------~~----~~i~iwd~~~~~~~~~~~~~~~---- 585 (1101)
...+++++++..++.+..+.. ++ +.|..+|..+|+.+-.+.....
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 135788899888887764210 11 2599999999999887764321
Q ss_pred ----cceEEEEEeCCC---CEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-----------------------------
Q 001319 586 ----KSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL----------------------------- 629 (1101)
Q Consensus 586 ----~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------- 629 (1101)
.....+....+| +.++.++.+|.++++|..+|+.+..+......
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223344467 67888999999999999999998766532100
Q ss_pred ----CCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 630 ----PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 630 ----~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
..-..++++|++.++++...+-...++..
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 00125788999888888877655555543
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.15 E-value=3.4e-08 Score=110.36 Aligned_cols=223 Identities=8% Similarity=0.024 Sum_probs=142.9
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecc-------cCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h-------~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
++..|.+++.++.|..+|.++|+.+-... +... ...+.+.-.. ++. .++.++.++.|..+| .+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 36678888889999999999998654221 1111 2233332222 334 467778899999999 8899887
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCce-----EEEEEccCCCEEEEeecCCCCC
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC-----TTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
.............. .+..++.++.++.|..+|..+++............ ...... +..++.+.. +
T Consensus 128 ~~~~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~----~ 197 (376)
T 3q7m_A 128 QTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD----N 197 (376)
T ss_dssp EEECSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT----T
T ss_pred EEeCCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC----C
Confidence 76544322211121 12477888899999999999998887665433211 122222 345666553 7
Q ss_pred ceEEEEeCCCCeeEEEecccCCcc---------e-EEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKS---------N-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
+.|..+|..+|+.+.......... + ....+ .+..++.++.++.++.+|..+++.+...... ...
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~ 271 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVN 271 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCC
Confidence 789999999999877665321100 0 11111 2567888889999999999999988776532 223
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.+.. ++..+++++.++.+..+|..++
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 3333 4667888888888888887766
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=4.1e-09 Score=115.54 Aligned_cols=301 Identities=11% Similarity=0.041 Sum_probs=184.8
Q ss_pred EEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 456 ~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
+.....++. +..++.++.|..||.+++.+..+..+...+.++.... ++ .++.++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEec--CC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 344555665 6777788889999977777665554444455555433 44 45566655 888875 444444443
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
..........+. + ..+..++. ++.|..+|.. ++....+..... .+..+...+++. ++.++.++.|+.+|..
T Consensus 95 ~~~~~~~~~~~~-~-~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF-E-DILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE-T-TEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE-C-CEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 333323333333 4 44555543 6789999988 777666654433 455566666665 6677888999999998
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccccc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 695 (1101)
++....+..... .+.++.+.+++.+.+ ++ +.+..+| .++..
T Consensus 166 -g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-------------------------------- 206 (330)
T 3hxj_A 166 -GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-------------------------------- 206 (330)
T ss_dssp -SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE--------------------------------
T ss_pred -CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE--------------------------------
Confidence 777766654432 567777777776544 33 6677666 33210
Q ss_pred CCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCC
Q 001319 696 GTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 775 (1101)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~ 775 (1101)
+|....
T Consensus 207 -------------------------------------------------------------------~~~~~~------- 212 (330)
T 3hxj_A 207 -------------------------------------------------------------------KWNFYA------- 212 (330)
T ss_dssp -------------------------------------------------------------------EEEECC-------
T ss_pred -------------------------------------------------------------------EEEEcc-------
Confidence 011000
Q ss_pred CeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEec
Q 001319 776 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 855 (1101)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 855 (1101)
....+.++++.++|.+.+...++.+..+|. +++....+......+..+.+.+
T Consensus 213 ---------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 264 (330)
T 3hxj_A 213 ---------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN 264 (330)
T ss_dssp ---------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT
T ss_pred ---------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC
Confidence 112244556666776666555677777764 5555555554444455566655
Q ss_pred CCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 856 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 856 ~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+ |..++.+|.+++.....
T Consensus 265 -~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 265 -TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred -CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 44 4667888889999995 6777766665566778888877776 45588899999887765
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.11 E-value=1.1e-08 Score=115.17 Aligned_cols=260 Identities=14% Similarity=0.048 Sum_probs=173.4
Q ss_pred CCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE-e-CCCCEEEEEe------------------CCCc
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-D-TTQNHFLAVG------------------EDSQ 608 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~ 608 (1101)
||++++.+.. .+..|.+.|+.+.++...+.-........+++ + |+++++++++ .++.
T Consensus 100 DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 8999998754 46789999999999888665433335677777 5 9999999985 2457
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc---------------EEEEEccccccccccccCCCc
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG---------------FKILANAIGLRSLRAVENPPF 673 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~---------------i~iwd~~~~~~~~~~~~~~~~ 673 (1101)
+.+.|..+.+...++...+. -..++++|+|+++++++.+.. +.+.+....
T Consensus 177 vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~------------ 241 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI------------ 241 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH------------
T ss_pred EEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce------------
Confidence 99999999999998876542 367889999999999987632 111111100
Q ss_pred ccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEE
Q 001319 674 EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 753 (1101)
Q Consensus 674 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 753 (1101)
..+.++|+...
T Consensus 242 ---------------------------------------------------------------------~~~v~~Gk~~~ 252 (595)
T 1fwx_A 242 ---------------------------------------------------------------------EKAIAAGDYQE 252 (595)
T ss_dssp ---------------------------------------------------------------------HHHHHHTCSEE
T ss_pred ---------------------------------------------------------------------eEeccCCCeeE
Confidence 00122333222
Q ss_pred EeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEE
Q 001319 754 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFN 831 (1101)
Q Consensus 754 ~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd 831 (1101)
. +.|.+.|....+ +......+. -.....++.++|||+++++++ +++|.++|
T Consensus 253 i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 253 L----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp E----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred E----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 2 235555543210 111000000 123456799999999988886 68899999
Q ss_pred CCCce------------EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec----------ceEEEeeccCCC
Q 001319 832 MMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----------DEVKSKLKGHQK 889 (1101)
Q Consensus 832 ~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~----------~~~~~~~~~h~~ 889 (1101)
+.+.+ ....+. -......++|++ +|...++.-.|++|.+||+.+ .+.+.++..|..
T Consensus 306 ~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 306 VTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp GGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred CcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 98653 333333 345688899999 776566777899999999987 567777776654
Q ss_pred Ce-----eEEEEcCCCCEEEEEeC---CCc----------EEEEECCCCcccc
Q 001319 890 RI-----TGLAFSTSLNILVSSGA---DAQ----------LCVWSIDTWEKRK 924 (1101)
Q Consensus 890 ~V-----~~l~~s~d~~~l~s~s~---Dg~----------v~lwd~~~~~~~~ 924 (1101)
+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 384 pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 384 PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 32 33456899999998753 442 2889997666443
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=6e-09 Score=114.21 Aligned_cols=218 Identities=13% Similarity=0.122 Sum_probs=140.9
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEe
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 490 (1101)
++.+..+|. |.+++.++.|..|| .+++.+.. ...+...+.++...++|. +..++.+ |..+|.+|+.+..+
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINPDGTEKWRF 93 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECCCGGGGGGS
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECCCCcEEEEE
Confidence 344444554 55666788899999 87775432 223444567777777775 5555544 88888777665554
Q ss_pred ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEe
Q 001319 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 570 (1101)
...........+. + ..++.++.++.|..+|.. +............+.++...+++...+. +. ++.|..+|
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vg-t~----~~~l~~~d 163 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVG-SN----DNYLYAIN 163 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEE-CT----TSEEEEEC
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEE-cC----CCEEEEEC
Confidence 4333222223332 2 467788889999999988 6666666555556677788888875554 32 67899999
Q ss_pred CCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.. ++....+..... .+..+.+.+++. ++.++ +.|+.+| .+++......... ..+.++...++|. |.+++.+
T Consensus 164 ~~-g~~~~~~~~~~~-~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~ 234 (330)
T 3hxj_A 164 PD-GTEKWRFKTNDA-ITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLD 234 (330)
T ss_dssp TT-SCEEEEEECSSC-CCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETT
T ss_pred CC-CCEeEEEecCCC-ceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCC
Confidence 98 877766654433 566667777765 44455 8899999 7777766665433 3577888887775 4456666
Q ss_pred CcEEEEE
Q 001319 651 NGFKILA 657 (1101)
Q Consensus 651 ~~i~iwd 657 (1101)
+.+..++
T Consensus 235 ~gl~~~~ 241 (330)
T 3hxj_A 235 GHLYAIN 241 (330)
T ss_dssp TEEEEEC
T ss_pred CeEEEEC
Confidence 6666665
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=8.6e-08 Score=104.10 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=128.0
Q ss_pred EEEecCCCCeEEEEc-C------CeEEEEECCCceEEEEeeCCCC---CeeEEEEecCCCCEEEEEe-------------
Q 001319 809 CIALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT------------- 865 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~------------- 865 (1101)
.+..+||| +++++. + |.|.++|.++++.+.++..... --..+.|+| +++.+++..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 35556666 444432 2 6799999999999998863222 234588899 888887774
Q ss_pred ------CCCcEEEEEeecceEEEeeccC-C-CCeeEEEE--cCCCCEEEEEe------CCCcEEEEECCCCccccceEEe
Q 001319 866 ------EDSTIHIYNVRVDEVKSKLKGH-Q-KRITGLAF--STSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 866 ------~dg~v~iwd~~~~~~~~~~~~h-~-~~V~~l~~--s~d~~~l~s~s------~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
.+.+|.+||+.+++.+.++..- . .....+.| +|+++++.+++ .+++|.+|..+.++......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999999888877642 1 23455655 99999888776 4568888776654433222222
Q ss_pred ecCC----CC----------CCCcceEEEcCCCCEEEEEe--CCeEEEEEcC---CceeeeEeccCCC-----C------
Q 001319 930 IPAG----KT----------PTGDTRVQFNADQVRMLVVH--ETQLAIYDAS---KMERIRQWTPQDA-----L------ 979 (1101)
Q Consensus 930 ~~~~----~~----------~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~---~~~~~~~~~~~~~-----h------ 979 (1101)
.... .. ......+.+|+||++|.++. .+.|.+||+. +.+.+..+...-. |
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence 1111 00 14578899999999999975 7899999986 3355555543200 0
Q ss_pred CCCEEEEEEccCCCEEEEEe
Q 001319 980 SAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~ 999 (1101)
...-..+.+||||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 11357899999999999887
No 241
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.08 E-value=2.1e-05 Score=92.48 Aligned_cols=457 Identities=11% Similarity=-0.015 Sum_probs=237.2
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
..-..+.+++|++.+.+++.+-...+.|..++++...... .++...-.....+|+.+.++.|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------------------~v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------------------NVVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE------------------EEECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------------------EEEeCCCCCcCeEEEEecCCEE
Confidence 3455789999999877776665567788888887542110 0122223468899999976666
Q ss_pred EEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEEcCCceeEEeec-CCcCeE
Q 001319 422 GVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1101)
Q Consensus 422 as~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~-h~~~v~ 498 (1101)
..+. ..+.|.+.++++..... .+...-.....|++.|.+.. ++++- +..+.|...+.+|.....+.. .-....
T Consensus 99 y~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence 6554 56889999998653221 12234455778999998664 34443 334566666677766555532 334578
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+++.+.. +.+.++-...+.|...+++................++++..+ .++.+-. +.+.|...|..+++...
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCE
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccE
Confidence 88887642 345555556678888888654443333222233456777655 4544432 36678888877665433
Q ss_pred EecccCCc------------------------ceEEEEE-----------eCCC--------------C-EEEEEeCCCc
Q 001319 579 TYAGFRKK------------------------SNGVVQF-----------DTTQ--------------N-HFLAVGEDSQ 608 (1101)
Q Consensus 579 ~~~~~~~~------------------------~v~~~~~-----------~~~~--------------~-~l~~~~~dg~ 608 (1101)
.+...... ....+|+ +|.| . +|+. +..+.
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~-~~~~~ 327 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL-ARRTD 327 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE-EESSC
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE-Ecccc
Confidence 32211000 0001111 1211 1 1222 22334
Q ss_pred EEEEECCCCeeeE-eeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccccCCCcccccCcceeeeee
Q 001319 609 IKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1101)
Q Consensus 609 i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1101)
|+..++....... .+.. .+...+.+++|++.+..|+.+. ..+.|+.++...... ..+.
T Consensus 328 i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~--~~v~----------------- 387 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS--QFVV----------------- 387 (619)
T ss_dssp EEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE-----------------
T ss_pred eEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--EEEE-----------------
Confidence 5555554432111 1111 1122456778887555555554 355666666543210 0000
Q ss_pred eccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEe-ecCCeEEEEE
Q 001319 687 VSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKLWK 765 (1101)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~~w~ 765 (1101)
........++++...+..|+.+ ...+.|.+.+
T Consensus 388 -----------------------------------------------~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 388 -----------------------------------------------TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp -----------------------------------------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -----------------------------------------------ECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 0011233456666544434443 3456666665
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEee
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~ 842 (1101)
++... ...... ..-.....+++.|....|..+. ..+|...+++.........
T Consensus 421 ~~G~~-----------------------~~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~ 475 (619)
T 3s94_A 421 LNGTM-----------------------RKILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN 475 (619)
T ss_dssp TTSCS-----------------------CEEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CCCCe-----------------------EEEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe
Confidence 43210 000000 1234578899999755554443 3567777775433333333
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
..-.....+++++.++++.++=+..+.|..+++........+...-....+|++..+ ...++-...+.|...|..++
T Consensus 476 ~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 476 TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 334567899999834444444445578888887644322222222233456666543 34444444566777777665
No 242
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.08 E-value=0.00018 Score=90.53 Aligned_cols=577 Identities=9% Similarity=0.023 Sum_probs=282.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC----CCEEEE
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGV 423 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd----g~~las 423 (1101)
.|+++-.+| ++..|+..|.=.+|.+..........+.+.| --..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 455555566 4567888787777877653211000011100 1123457777776532 235555
Q ss_pred EE---CCCeEEEEeecCCcccccceeeecccCcEEEEEEec---CCCceEEEEecCCceEEEEEcCCceeEEee--cCCc
Q 001319 424 AF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEA 495 (1101)
Q Consensus 424 ~~---~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~h~~ 495 (1101)
++ .+|.+++..-.=+-.......+.+ ...++.+.... .+. +|+.+..+.+ .|+..++..+.... +-..
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~~gf~~ 471 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETELMGFVD 471 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECCTTCCS
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCcccccccccccC
Confidence 43 467888765432211111112332 24566665432 233 5666665666 45654444444432 1111
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
....++...-+++ .++=.. ...|++.+.........+..+. ..|...+.+. .+++.+. .+.+.++++..+
T Consensus 472 ~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~~ 542 (1158)
T 3ei3_A 472 DQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHPQ 542 (1158)
T ss_dssp SSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEETT
T ss_pred CCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeCC
Confidence 1111111111111 222222 2346666655444444444333 3566665543 4555553 356777777665
Q ss_pred eeEEEecccCCcceEEEEEeCC------CCEEEEEeC-CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec--CCCEEE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTT------QNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK--EGNLLA 645 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~g~~l~ 645 (1101)
++.......-...+.++++.+. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...+|.
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~ 621 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLL 621 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEE
Confidence 4333222222336888888763 368888885 99999999998776655443221 1223343332 345788
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+|-.||.+..+.+......+...+ .......++.-..+...+...+...+... .+-+...+..
T Consensus 622 igl~dG~l~~~~~d~~tg~l~d~r--~~~LG~~pv~L~~~~~~~~~~V~a~s~rp---------------~liy~~~~~l 684 (1158)
T 3ei3_A 622 CALGDGALFYFGLNIETGLLSDRK--KVTLGTQPTVLRTFRSLSTTNVFACSDRP---------------TVIYSSNHKL 684 (1158)
T ss_dssp EEETTSEEEEEEECTTTCCEEEEE--EEECCSSCCEEEEEESSSCEEEEEESSSC---------------EEEEESSSSE
T ss_pred EEeCCCeEEEEEEcCCCCccccce--eEEcCCCceEEEEEeeCCceeEEEECCCC---------------EEEEEcCCce
Confidence 899999887665542110000000 00000123333333333322222211111 1111222222
Q ss_pred EEEEcCCCCCCcccEE-EEEeecCc--ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCC
Q 001319 726 RLVTMPESTDTSSKVV-RLLYTNSA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 802 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~-~~~~s~~~--~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1101)
....+.. ..+. ...|+... ..++..+ ++.+++..++.... |. ...++
T Consensus 685 ~~s~l~~-----~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--------------~~-------~~~ip--- 734 (1158)
T 3ei3_A 685 VFSNVNL-----KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--------------LH-------IRTVP--- 734 (1158)
T ss_dssp EEEEBSS-----SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--------------EE-------EEEEE---
T ss_pred EEeccCh-----HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--------------ee-------EEEEe---
Confidence 2221111 1121 12232211 2244333 44588776642210 00 00000
Q ss_pred CCCCEeEEEecCCCCeEEEEc--------------------------------------------------CCeEEEEEC
Q 001319 803 LEEAVPCIALSKNDSYVMSAT--------------------------------------------------GGKISLFNM 832 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~--------------------------------------------------dg~i~vwd~ 832 (1101)
-...+..++++|+.+.++.+. .+.|++.|.
T Consensus 735 L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp 814 (1158)
T 3ei3_A 735 LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ 814 (1158)
T ss_dssp CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET
T ss_pred CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeC
Confidence 122334444444333222110 134788888
Q ss_pred CCceEEEEeeCCCC-CeeEEE---EecCCCCEEEEEe----------CCCcEEEEEeecceEEEee-ccCCCCeeEEEEc
Q 001319 833 MTFKVMTTFMSPPP-ASTFLA---FHPQDNNIIAIGT----------EDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFS 897 (1101)
Q Consensus 833 ~~~~~~~~~~~~~~-~i~~l~---~s~~~~~~la~g~----------~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s 897 (1101)
.+++.+..+.-... .+.+++ |..+...++++|+ ..|.|++|++..+++.... ....++|++++--
T Consensus 815 ~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~ 894 (1158)
T 3ei3_A 815 HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF 894 (1158)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE
T ss_pred CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee
Confidence 88888776654333 345554 4332357899887 3488999999866443222 2346789888754
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEE--EEcCCceeeeEec
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAI--YDASKMERIRQWT 974 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v--~d~~~~~~~~~~~ 974 (1101)
+|+.|+.. ...|++|++...+.+. ...... ..+..+.....+.++++|+ -..+.+ |+....+....-.
T Consensus 895 -~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~-----~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~ 965 (1158)
T 3ei3_A 895 -NGKLLASI--NSTVRLYEWTTEKELR-TECNHY-----NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR 965 (1158)
T ss_dssp -TTEEEEEE--TTEEEEEEECTTSCEE-EEEEEC-----CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred -CCEEEEEc--CCEEEEEECCCCceEE-EEeecc-----ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence 35444433 4789999998754332 111111 1233334444677888887 445554 4554444433322
Q ss_pred cCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 975 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 975 ~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
+.+...++++.|-.++ .++.+..+|.|.+.....
T Consensus 966 --D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 --DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred --ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 2337889999998665 677799999999987765
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.03 E-value=5.4e-08 Score=105.63 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=151.8
Q ss_pred EEe--cCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC-CccEEEEEEccCCCEEEEEECC
Q 001319 351 DFH--PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 351 ~fs--pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~v~~~~~spdg~~las~~~d 427 (1101)
+++ +++++|++.|..++.|.|+|+.+..... +-.+..+ +..+.... ...-..+..+||| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 347 8899999999999999999987541100 0001100 00001111 1245677889999 66665544
Q ss_pred ------CeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEec-------------------CCceEEEEE
Q 001319 428 ------HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG-------------------DDKLIKVWE 481 (1101)
Q Consensus 428 ------~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~-------------------~d~~v~iwd 481 (1101)
+.|.+.|.++++.+..... .+.. .--..+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 7899999999887764321 1222 2234688899999 677764 478999999
Q ss_pred -cCCceeEEeecC-C-cCeEEEecccCCCccEEEEec------cCCeEEEEecCCCCee--ee--ccC-------C----
Q 001319 482 -LSGRKLFNFEGH-E-APVYSICPHHKENIQFIFSTA------IDGKIKAWLYDTMGSR--VD--YDA-------P---- 537 (1101)
Q Consensus 482 -~~~~~~~~~~~h-~-~~v~~v~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~--~~--~~~-------~---- 537 (1101)
.+++.+.++.-. . .....+.|.+++++++++.++ .+++|.+|..+.+... .. +.. .
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 777777777642 1 234556664455777877766 4568877766542211 00 000 0
Q ss_pred -----CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC---CeeEEEecccCC---------c----ceEEEEEeCC
Q 001319 538 -----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQFDTT 596 (1101)
Q Consensus 538 -----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~v~~~~~~~~ 596 (1101)
......+.+|+||++|.++.. +.+.|.++|+.. .+.+..+..... . ....++++||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 234678999999999998876 578999999852 355555443210 0 2456899999
Q ss_pred CCEEEEEe
Q 001319 597 QNHFLAVG 604 (1101)
Q Consensus 597 ~~~l~~~~ 604 (1101)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999886
No 244
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.03 E-value=0.00014 Score=85.61 Aligned_cols=460 Identities=10% Similarity=-0.008 Sum_probs=246.0
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
-..+.+++|++.+..++.+-..++.|..++++...... ++.........+|+.+.++.|..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY~ 96 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLYW 96 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEEE
Confidence 35789999999877777777778899999887543221 11112235678999887666655
Q ss_pred EE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEEcCCceeEEeecCCcCeEEEe
Q 001319 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 424 ~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+. ..+.|.+.++++... .. .+...-.....+++.|.... ++++- +..+.|...+.+|.....+...-.....++
T Consensus 97 tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gla 172 (628)
T 4a0p_A 97 ADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLT 172 (628)
T ss_dssp EETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEE
T ss_pred EECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEE
Confidence 54 467899999876532 21 12233455789999996654 34443 335677777777776665554455678898
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
+.+.. +.+.++-...+.|...+++...... +.........+++.. + .++..-. ..+.|...|..+++....+.
T Consensus 173 lD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~-~-~ly~tD~---~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 173 IDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ-D-YIYWTDW---SRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET-T-EEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred Ecccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC-C-EEEEecC---CCCEEEEEECCCCCceEEEe
Confidence 87642 3444555667889999987654432 222333456777754 3 4444322 36678888876665333332
Q ss_pred ccCC-----------------------cceEEEEEe----------CCCC--------------EEEEEeCCCcEEEEEC
Q 001319 582 GFRK-----------------------KSNGVVQFD----------TTQN--------------HFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 582 ~~~~-----------------------~~v~~~~~~----------~~~~--------------~l~~~~~dg~i~iwd~ 614 (1101)
.... .....+|+. |.|- +++.+ ....|+-..+
T Consensus 246 ~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l 324 (628)
T 4a0p_A 246 GHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMVI 324 (628)
T ss_dssp CSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEEECC
T ss_pred cCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEEEec
Confidence 1100 001112221 1111 11111 1122222222
Q ss_pred CCCee-eEeeccCCCCCCCCeeEEecCCCEEEEEEc-CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccc
Q 001319 615 DNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1101)
Q Consensus 615 ~~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 692 (1101)
..... ...+.. .....+..++|.+....|+.+.. .+.|+.++..... ....+...
T Consensus 325 ~~~~~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-~~~v~~~~--------------------- 381 (628)
T 4a0p_A 325 DEQQSPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-GFTVVVSS--------------------- 381 (628)
T ss_dssp CTTCCCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-----------------------
T ss_pred ccccCceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-ceEEEEcc---------------------
Confidence 21110 001111 11234567778776656655543 4555555543220 00000000
Q ss_pred cccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEe-ecCCeEEEEEecCCCC
Q 001319 693 VSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKLWKWHRNEQ 771 (1101)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~~w~~~~~~~ 771 (1101)
.........+..+++...++.|+.+ +..+.|.+.+++.
T Consensus 382 --------------------------------------~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G--- 420 (628)
T 4a0p_A 382 --------------------------------------VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG--- 420 (628)
T ss_dssp --------------------------------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred --------------------------------------cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC---
Confidence 0000012345677887776655544 3456666665431
Q ss_pred CCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC-CCeEEEEc-CC--eEEEEECCCceEEEEeeCCCCC
Q 001319 772 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPA 847 (1101)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~ 847 (1101)
........ ........+++.|. |.++.+-. .. +|...+++...........-..
T Consensus 421 --------------------~~~~~l~~--~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~ 478 (628)
T 4a0p_A 421 --------------------RSVGVVLK--GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSK 478 (628)
T ss_dssp --------------------CEEEEEEE--CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSC
T ss_pred --------------------CeEEEEEe--CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCC
Confidence 11111011 12345789999994 54444433 32 6777777644333333333456
Q ss_pred eeEEEEecCCCCEEEEE-eCCCcEEEEEeecceEEEeec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 001319 848 STFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g-~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~ 923 (1101)
...+++.+ .+..|..+ +..+.|..+++... ....+. .......+|++.. +...++-...+.|...|..+|+..
T Consensus 479 P~gla~D~-~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 479 PIALALDS-RLGKLFWADSDLRRIESSDLSGA-NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EEEEEEET-TTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred ccEEEEeC-CCCEEEEEeCCCCEEEEEeCCCC-ceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence 78999999 55455444 45678999988543 333332 3344567888764 455555555677888887776643
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.00 E-value=1.7e-08 Score=113.74 Aligned_cols=237 Identities=7% Similarity=0.030 Sum_probs=164.9
Q ss_pred CCCeEEEEc--CCeEEEEECCCceEEEEeeCC-CCCeeEEEE-e-cCCCCEEEEEe------------------CCCcEE
Q 001319 815 NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAF-H-PQDNNIIAIGT------------------EDSTIH 871 (1101)
Q Consensus 815 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~~~~~la~g~------------------~dg~v~ 871 (1101)
||+++.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + | +++++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 888888776 567999999999988855433 245888888 5 7 888888774 345799
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC--------------------------------------cEE
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--------------------------------------QLC 913 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------------~v~ 913 (1101)
+.|..+.+...++.--. ....++++|||+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999998888776322 457788999999999888553 477
Q ss_pred EEECCC--Ccc-ccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce------------eeeEeccC
Q 001319 914 VWSIDT--WEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME------------RIRQWTPQ 976 (1101)
Q Consensus 914 lwd~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~------------~~~~~~~~ 976 (1101)
+.|..+ ++. ....... .....+.++|||+++++++ +.+|.++|+.+.+ .+.....
T Consensus 258 VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred EEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence 777776 332 2222222 3566799999999999975 7899999999763 3344433
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC----------CceeEeeCCCCcCCCcccCCCCccceEEEEEecCC
Q 001319 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT----------LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1046 (1101)
Q Consensus 977 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d 1046 (1101)
......++|++||...++..-|+.|.+||+++ ...+.++.. .+.+ +|.+ ...++..+| |
T Consensus 330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqp----Gh~~--~~~g~t~~~-D 398 (595)
T 1fwx_A 330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP----GHLK--TVMGETLDA-T 398 (595)
T ss_dssp ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE----EEEE--ETTTTSTTC-C
T ss_pred ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccc----ccce--eccceEeCC-C
Confidence 56789999999994344567899999999987 445555542 1110 1111 111234567 7
Q ss_pred CCEEEEEECC--CeE-----------EEEeCCCCCCccc
Q 001319 1047 PNQFAIGLTD--GSV-----------KVMEPSESEGKWG 1072 (1101)
Q Consensus 1047 ~~~l~s~~~D--g~v-----------~iWd~~~~~~~~~ 1072 (1101)
+.+|+++..- .++ .++|+++++.++-
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 8888887542 223 8899977774433
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=5.2e-10 Score=123.99 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=113.1
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++..|++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678999999999999999999987653 333 4555666667777 677888999999999 78988777654422
Q ss_pred CeEEEecccCC-CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 496 ~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
... ..+|.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 111 111111 23578888999999999999998887766543 2345678888888875 789999999999
Q ss_pred eeEEEecccCCcceEEEEEeCCC---CEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
+.+..+.... ....++..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8766554221 1122333332 5678889999999999999998887764
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.96 E-value=2.4e-06 Score=89.87 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=145.9
Q ss_pred ccEEEEEEccCCCEEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
..+..++|+|+++.|..+. .++.|.+++..++.... .+.........+++++++.. ++++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999877666655 46789999998754321 12222346789999998764 5566666789999996665
Q ss_pred eeEEeec-CCcCeEEEecccCCCccEEEEecc---CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 486 ~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
....+.. .......+++.+. +..|+.+.. .+.|..++++.................+++++++..|..+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4443332 2245688888763 234444433 468888887654433222233346789999999888776654
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
+.+.|..+|.........+.+.. ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 46789999998655444443322 23445554 45666655 66899999999999888876432 223578888887
Q ss_pred CC
Q 001319 641 GN 642 (1101)
Q Consensus 641 g~ 642 (1101)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.91 E-value=2.8e-07 Score=110.36 Aligned_cols=192 Identities=15% Similarity=0.166 Sum_probs=130.2
Q ss_pred CCeEEEEECCCceEEEEeeCCC-------------------------------CCeeEEEEecCCCCEEEEEeCCC----
Q 001319 824 GGKISLFNMMTFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGTEDS---- 868 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg---- 868 (1101)
+|.|..+|..+|+.+..+.... .....+++.+ +..++++++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888877765311 0112478888 677888887776
Q ss_pred ---------------cEEEEEeecceEEEeecc--CC-------CCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCc
Q 001319 869 ---------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 869 ---------------~v~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.|..+|..+|+.+..++. |. .++....+..+|+ .++.++.+|.++++|..+|+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999999877653 32 2333333334665 68899999999999999998
Q ss_pred cccceEEee---------cCCC--------------------C-CCCcceEEEcCCCCEEEEE-----------------
Q 001319 922 KRKSVTIHI---------PAGK--------------------T-PTGDTRVQFNADQVRMLVV----------------- 954 (1101)
Q Consensus 922 ~~~~~~~~~---------~~~~--------------------~-~~~v~~~~~s~d~~~l~~~----------------- 954 (1101)
.+....... ..+. . ...-..++++|+...+.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 763221100 0000 0 0011237888887776641
Q ss_pred --------------------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 955 --------------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 955 --------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
.++.|..||..+++.+-..... .+.....+...|.++++++.||.+++||.++|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1277999999999988776653 2233334455788999999999999999999999
Q ss_pred eEeeCC
Q 001319 1015 RCYIAP 1020 (1101)
Q Consensus 1015 ~~~~~~ 1020 (1101)
+.++..
T Consensus 492 l~~~~~ 497 (668)
T 1kv9_A 492 LWQFEA 497 (668)
T ss_dssp EEEEEC
T ss_pred heEecC
Confidence 988874
No 249
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.90 E-value=4.3e-10 Score=124.64 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=109.9
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC-ee
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-IT 892 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-V~ 892 (1101)
++..+++++ ||.|+.||..+|+.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 456666666 89999999999999998886 4565555666 6777888889999999999999877666543211 11
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceee
Q 001319 893 -GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERI 970 (1101)
Q Consensus 893 -~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~ 970 (1101)
...+. ++..+++++.|+.|+.||..+|+.+...... . ...++|++..+++ +.++.|..||..+|+.+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-------~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-------F---ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC-------C---cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11111 3457788889999999999999875443321 1 1345567777776 45899999999999877
Q ss_pred eEeccCCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 971 RQWTPQDALSAPISCAVYSCNS---QLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg---~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
..+... .....+++.+. ..+++++.||.|+.||..+|+.+-...
T Consensus 154 W~~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecc-----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 665432 12233344432 567788899999999999999876654
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.83 E-value=2.6e-06 Score=99.31 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCeEEEEECCCceEEEEeeCCCCC-------------------------------------e-eEEEEecCCCCEEEEEe
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPA-------------------------------------S-TFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------------i-~~l~~s~~~~~~la~g~ 865 (1101)
+|.|+.+|..+|+.+..+...... + ..+++.+ ...++..++
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 577888888888888776542211 0 1356667 556777776
Q ss_pred CC----------------CcEEEEEeecceEEEeeccCC----------CCeeEEEEc-CCC---CEEEEEeCCCcEEEE
Q 001319 866 ED----------------STIHIYNVRVDEVKSKLKGHQ----------KRITGLAFS-TSL---NILVSSGADAQLCVW 915 (1101)
Q Consensus 866 ~d----------------g~v~iwd~~~~~~~~~~~~h~----------~~V~~l~~s-~d~---~~l~s~s~Dg~v~lw 915 (1101)
.+ +.|..+|..+|+.+-.++... .++. +... .+| +.++.++.+|.+.++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 379999999999887665322 1121 2222 467 467788999999999
Q ss_pred ECCCCccccceEEee----------cCCCC-----------------------CCCcceEEEcCCCCEEEEE--------
Q 001319 916 SIDTWEKRKSVTIHI----------PAGKT-----------------------PTGDTRVQFNADQVRMLVV-------- 954 (1101)
Q Consensus 916 d~~~~~~~~~~~~~~----------~~~~~-----------------------~~~v~~~~~s~d~~~l~~~-------- 954 (1101)
|..+|+.+-...... ..+.. ...-..++++|+..++.+.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999998764432110 00000 0111346777776665542
Q ss_pred --------------------------------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 955 --------------------------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 955 --------------------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
..+.|..||+.+++.+-..... .+...-.+.-.|.+++.++.||
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcceEecCCEEEEECCCC
Confidence 2367888888888887666432 1111111223577888899999
Q ss_pred cEEEEeCCCCceeEeeCC
Q 001319 1003 NIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++.||.++|+.+-++..
T Consensus 495 ~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEEEeeC
Confidence 999999999999988764
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=1.5e-06 Score=104.09 Aligned_cols=190 Identities=12% Similarity=0.130 Sum_probs=124.5
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCe-----------EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-----------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v-----------~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 534 (1101)
.++.++.++.|..+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 366666788999999 8999987775432210 11121 2357888889999999999999998876
Q ss_pred cCCCC----ceEE-EEEccCCCEEEEeecCC--CCCceEEEEeCCCCeeEEEecccCC----------------------
Q 001319 535 DAPGH----WCTT-MLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIKRTYAGFRK---------------------- 585 (1101)
Q Consensus 535 ~~~~~----~v~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 585 (1101)
..... .+.+ ..+ .++ .++++.... ..++.|..+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 54311 1111 111 133 455443211 1258899999999999887753110
Q ss_pred --------cceEEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCeeeEeeccCCCC-------CC
Q 001319 586 --------KSNGVVQFDTTQNHFLAVGEDS-------------------QIKFWDMDNVNILTSTDAEGGL-------PN 631 (1101)
Q Consensus 586 --------~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (1101)
.....+++.++.+.++.+..++ .|..+|..+|+.+..++...+. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888998887766 3999999999999887653221 11
Q ss_pred CCeeEEecCCC---EEEEEEcCCcEEEEEccccc
Q 001319 632 LPRLRFSKEGN---LLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 632 v~~v~~s~~g~---~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.....+..+|+ .++.++.+|.++++|..++.
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 11222333665 68889999999999999883
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.80 E-value=2.4e-06 Score=89.90 Aligned_cols=202 Identities=8% Similarity=-0.013 Sum_probs=133.4
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
....+++++++..|..+. ++.|.+++.........+.........+++++.++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999777666654 688999999766554444333356889999983345555555678999999864332222
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCe
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 958 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~ 958 (1101)
..........++++|++..|..+.. .+.|..++++.... . .+. .. .......+++++++..|.+++ .+.
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~--~~~--~~-~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R--ILA--QD-NLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E--EEE--CT-TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E--EEE--EC-CCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 2222246789999997666655543 36788888865321 1 111 11 114567899999988877755 678
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeC
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
|.+++.+.......... ......+++. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 191 I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 99999986554333332 2334566654 45555444 56899999999999888876
No 253
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.79 E-value=0.0013 Score=80.68 Aligned_cols=537 Identities=10% Similarity=0.045 Sum_probs=285.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...|.+|.-..+|. |-.|..+| +..||-..-+..... -......|.++.-..+|. |..|+.+| +..+| .++
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 56799998887775 44566777 666763221111100 011234688888877765 55555555 78899 554
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee----ccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+...........|.++.. .+| .|..++.+ .+..+|..+...... .......|.++....+|...+..
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt---- 163 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT---- 163 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE----
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe----
Confidence 322211112234666643 244 45555555 677788765543321 11234468888888888766643
Q ss_pred CCCceEEEEeCCCCeeEEEeccc----CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGF----RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
.+-|..++..+++........ ....+.++....++..|..|+. +-+..+|..+++........ ...|.++.
T Consensus 164 --~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~ 238 (758)
T 3ott_A 164 --YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLA 238 (758)
T ss_dssp --TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEE
T ss_pred --CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEE
Confidence 224778888776643321111 1223677777777776666664 46888998776543221111 12467777
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
...+|.+.+ |+.+ -+.+++..+.. +..+..... +..
T Consensus 239 ~d~~g~lWi-gT~~-Gl~~~~~~~~~--~~~~~~~~~--------------~~~-------------------------- 274 (758)
T 3ott_A 239 LDGNGDLLA-GTDN-GLYVYHNDTTP--LQHIIHDSR--------------NIQ-------------------------- 274 (758)
T ss_dssp ECTTCCEEE-EETT-EEEEECCTTSC--CEEECCCTT--------------CTT--------------------------
T ss_pred EcCCCCEEE-EeCC-ceeEEecCCCc--EEEEEcCCC--------------CcC--------------------------
Confidence 777776555 4444 56677654431 111100000 000
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
.-....|.++....+|. |..++..| +.++.... . . ..+.. .
T Consensus 275 -----------------~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~----~--------~~~~~-------~ 315 (758)
T 3ott_A 275 -----------------SLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A----L--------QFIPI-------S 315 (758)
T ss_dssp -----------------SCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC------C--------EEEEH-------H
T ss_pred -----------------cCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c----e--------eEEec-------c
Confidence 01334567777666665 44455555 33322100 0 0 00000 0
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCce--EEEEeeC-------CCCCeeEEEEecCCCCEEEEEeCC
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK--VMTTFMS-------PPPASTFLAFHPQDNNIIAIGTED 867 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~--~~~~~~~-------~~~~i~~l~~s~~~~~~la~g~~d 867 (1101)
..........|.++....+|.+-+... +.+..++..+++ ....+.. ....|.++.-.. ++.+. .|+ +
T Consensus 316 ~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt-~ 391 (758)
T 3ott_A 316 QITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLW-IAT-D 391 (758)
T ss_dssp HHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEE-EEE-T
T ss_pred cCCCCCCCceEEEEEEcCCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEE-EEe-C
Confidence 000001335688898888888766554 456667665432 1112211 123578888776 56554 455 4
Q ss_pred CcEEEEEeecceEEEee--cc----CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc--cce----EEeecCCCC
Q 001319 868 STIHIYNVRVDEVKSKL--KG----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR--KSV----TIHIPAGKT 935 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~--~~----h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~--~~~----~~~~~~~~~ 935 (1101)
+-+..|+..+++..... .. ....|.++....+|++.+ |+..+-|.++|..+.... ... ......+-.
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS 470 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccccccc
Confidence 56999998877654321 11 234588888877766544 665555888885431000 000 111112222
Q ss_pred CCCcceEEEcCCCCEEE-EEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 936 PTGDTRVQFNADQVRML-VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 936 ~~~v~~~~~s~d~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
...+.++...++|.+.+ .+..+.|..||..+++..............+.++....+|.+.+. +..| +..||..++..
T Consensus 471 ~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~ 548 (758)
T 3ott_A 471 GMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQ 548 (758)
T ss_dssp CSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCC
T ss_pred cceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCce
Confidence 24588899999999876 345667999999877654432111111356889998889987664 4444 88888876653
Q ss_pred eEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1015 RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.. +. ...+ ... .+.++.. . ++.+.+++ .. .|..+|..+.+
T Consensus 549 ~~-~~-~~gl------~~~--~i~~i~~-~-~g~lWi~t-~~-Gl~~~~~~~~~ 588 (758)
T 3ott_A 549 QS-IS-FGSF------SNN--EILSMTC-V-KNSIWVST-TN-GLWIIDRKTMD 588 (758)
T ss_dssp CB-CC-CCC---------C--CEEEEEE-E-TTEEEEEE-SS-CEEEEETTTCC
T ss_pred EE-ec-ccCC------Ccc--ceEEEEE-C-CCCEEEEC-CC-CeEEEcCCCce
Confidence 22 11 0001 111 2345544 2 45555544 44 47777877655
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.79 E-value=0.0016 Score=81.84 Aligned_cols=569 Identities=8% Similarity=0.022 Sum_probs=277.2
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCcc-----cccceeeecccCcEEEEEEecCC----CceEEEEe--cCCceEE
Q 001319 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPN----KLLCVVTC--GDDKLIK 478 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~----~~~~l~s~--~~d~~v~ 478 (1101)
+++++-.+| +|+.|+..|.=.+|.+..... +....++ ..-++|.+++..... .+ +++.+ +.+|.++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~-i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQ-LVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCE-EEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCe-EEEEECcCCCCeEE
Confidence 566666555 788898888777777764322 1212222 345689888886432 22 33322 2567898
Q ss_pred EEE--cCCceeEEeec-CCcCeEEEeccc-CCCccEEEEeccCCeEEEEecCCCCeeeeccCC-----CCceEEEEEccC
Q 001319 479 VWE--LSGRKLFNFEG-HEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-----GHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd--~~~~~~~~~~~-h~~~v~~v~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~d 549 (1101)
+.. ..-+.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+... ........ ...+.+-.+ .+
T Consensus 407 ~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT
T ss_pred EEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC
Confidence 887 44443333321 123455554321 123357776666666 45554321 22221111 111222222 22
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
..++=.. ...|++.+...+..+..+....+..|...+.+ +.+++.+. ++.+.++.+..+++..... ..-.
T Consensus 484 -~~ivQVt-----~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~ 553 (1158)
T 3ei3_A 484 -QQLIQIT-----SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISH-TEME 553 (1158)
T ss_dssp -TEEEEEE-----SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEE-EECS
T ss_pred -CeEEEEe-----cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecc-cCCC
Confidence 2444333 44577788766666666765544456655554 34666665 6788888877654332211 1112
Q ss_pred CCCCeeEEecC------CCEEEEEEc-CCcEEEEEccccccccccccCCCcccccCcceeeeeeecc--ccccccCCCCC
Q 001319 630 PNLPRLRFSKE------GNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA--SSAVSSGTPAN 700 (1101)
Q Consensus 630 ~~v~~v~~s~~------g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~ 700 (1101)
..|.|+++.|. +.++++|.. |++++|+++.+. +.+....-. . .....++.+..-+ -++..+...+.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~~~~~~L~-~---~~~p~si~l~~~~~~~~L~igl~dG~ 628 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF-ELLHKEMLG-G---EIIPRSILMTTFESSHYLLCALGDGA 628 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC-CEEEEEECC-S---SCCEEEEEEEEETTEEEEEEEETTSE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC-CeEEEEECC-C---CCCCcEEEEEEeCCCcEEEEEeCCCe
Confidence 36899998763 479999996 999999999754 222111100 0 0111222222111 12222222221
Q ss_pred cceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc-cEEEeecCCeEEEEEecCCCCCCCCCeee
Q 001319 701 CKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATA 779 (1101)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 779 (1101)
.-....... ...+.+. +...+ ...++.=..+...|. .+++++ +....++.-
T Consensus 629 l~~~~~d~~---tg~l~d~------r~~~L-----G~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~------------- 680 (1158)
T 3ei3_A 629 LFYFGLNIE---TGLLSDR------KKVTL-----GTQPTVLRTFRSLSTTNVFACS-DRPTVIYSS------------- 680 (1158)
T ss_dssp EEEEEECTT---TCCEEEE------EEEEC-----CSSCCEEEEEESSSCEEEEEES-SSCEEEEES-------------
T ss_pred EEEEEEcCC---CCccccc------eeEEc-----CCCceEEEEEeeCCceeEEEEC-CCCEEEEEc-------------
Confidence 100000000 0001000 00111 011222222222222 222222 222222211
Q ss_pred eccccccccCCccceeeccCCCCCCCCEe-EEEecCC--CCeEEEEcCCeEEEEECCCce--EEEEeeCCCCCeeEEEEe
Q 001319 780 SAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSKN--DSYVMSATGGKISLFNMMTFK--VMTTFMSPPPASTFLAFH 854 (1101)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d--g~~la~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s 854 (1101)
.+.+....+ ....+. ...|+.. ..-++..+++.+++..+++.. .++.+.- ...+..++++
T Consensus 681 ----------~~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~ 745 (1158)
T 3ei3_A 681 ----------NHKLVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQ 745 (1158)
T ss_dssp ----------SSSEEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEE
T ss_pred ----------CCceEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeC-CCCceEEEEc
Confidence 011111111 111222 2334332 234555556668887765432 2333332 3567888888
Q ss_pred cCCCCEEEEEeCC-------------------------------------------------CcEEEEEeecceEEEeec
Q 001319 855 PQDNNIIAIGTED-------------------------------------------------STIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 855 ~~~~~~la~g~~d-------------------------------------------------g~v~iwd~~~~~~~~~~~ 885 (1101)
| ..+.++++..+ +.|++.|-.+.+.+..+.
T Consensus 746 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~ 824 (1158)
T 3ei3_A 746 E-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ 824 (1158)
T ss_dssp G-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE
T ss_pred C-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe
Confidence 8 55554444311 134555555555444332
Q ss_pred c-CCCCeeEEE---EcCC-CCEEEEEe----------CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 886 G-HQKRITGLA---FSTS-LNILVSSG----------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 886 ~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
- ....+.+++ |..+ ..++++|. ..|.|.++++..++...... ... .+.+++++--. | +
T Consensus 825 l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v----~g~v~al~~~~-g-~ 897 (1158)
T 3ei3_A 825 FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEV----KGAVYSMVEFN-G-K 897 (1158)
T ss_dssp CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEE----SSCEEEEEEET-T-E
T ss_pred CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEc----CCcCEEEeeeC-C-E
Confidence 1 122344444 3333 46888776 34789999997433221111 111 15566655432 3 7
Q ss_pred EEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE--eCCCCceeEeeCCCCcCCCcc
Q 001319 951 MLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF--DADTLRLRCYIAPSTYLSPSV 1028 (1101)
Q Consensus 951 l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~ 1028 (1101)
|+++-.+++++|++...+.++ ..... -..|..+.....|.+++.|+.-..|.++ +...+++...-.
T Consensus 898 Lla~ig~~l~vy~l~~~~~L~-~~~~~--~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--------- 965 (1158)
T 3ei3_A 898 LLASINSTVRLYEWTTEKELR-TECNH--YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--------- 965 (1158)
T ss_dssp EEEEETTEEEEEEECTTSCEE-EEEEE--CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE---------
T ss_pred EEEEcCCEEEEEECCCCceEE-EEeec--cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe---------
Confidence 777888999999998765444 11100 1112233333357789999877777765 444444433333
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1029 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1029 ~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
+-.+.+++++.+-. ...++.+..+|++.+.....
T Consensus 966 --D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 --DFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --CCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred --ecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 34556778888875 35788899999999998754
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=1.7e-06 Score=101.18 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=123.4
Q ss_pred CCeEEEEECCCceEEEEeeCCCCC--------------------------------------eeEEEEecCCCCEEEEEe
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPA--------------------------------------STFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------i~~l~~s~~~~~~la~g~ 865 (1101)
++.|..+|..+|+.+.++...... ...+++.+ ....+..++
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~ 253 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEEC
Confidence 567888888888887776542211 02356777 445666665
Q ss_pred CC----------------CcEEEEEeecceEEEeecc--CC--------CCeeEEEEcCCCC---EEEEEeCCCcEEEEE
Q 001319 866 ED----------------STIHIYNVRVDEVKSKLKG--HQ--------KRITGLAFSTSLN---ILVSSGADAQLCVWS 916 (1101)
Q Consensus 866 ~d----------------g~v~iwd~~~~~~~~~~~~--h~--------~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd 916 (1101)
.+ +.|..+|..+|+.+..++. |. .++. +....+|+ .++.++.+|.+.++|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 32 3599999999998876642 21 2221 22234674 577889999999999
Q ss_pred CCCCccccceEEee----------cCCCC------------------C-----CCcceEEEcCCCCEEEEEe--------
Q 001319 917 IDTWEKRKSVTIHI----------PAGKT------------------P-----TGDTRVQFNADQVRMLVVH-------- 955 (1101)
Q Consensus 917 ~~~~~~~~~~~~~~----------~~~~~------------------~-----~~v~~~~~s~d~~~l~~~~-------- 955 (1101)
..+|+.+....... ..+.. + ..-..++++|+..++.+..
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 99998654432211 00000 0 0013568888887776632
Q ss_pred ------------------------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001319 956 ------------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIG 1005 (1101)
Q Consensus 956 ------------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~ 1005 (1101)
++.|..||..+++.+...... .++....+...+..++.++.||.|+
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEE
Confidence 368999999999987776542 2222222333567788899999999
Q ss_pred EEeCCCCceeEeeCC
Q 001319 1006 VFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~~ 1020 (1101)
.||.++|+.+.++..
T Consensus 489 a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 489 ALDNKDGKELWNFKM 503 (571)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeC
Confidence 999999999988874
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=1e-06 Score=90.04 Aligned_cols=201 Identities=11% Similarity=0.049 Sum_probs=141.0
Q ss_pred CEeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 806 AVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
....++|++|+.+.++.+ ++.|.++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876666543 47899999999999988764222 22345554 3455555567899999999999999
Q ss_pred EeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEE
Q 001319 882 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLA 960 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~ 960 (1101)
.++..-... ...+++||+.|+++..++.|.++|..+.+......+... +........+.|. +|...+.. .++.|.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 888532122 344566888777777788999999999877665554321 1111235677777 67544443 378999
Q ss_pred EEEcCCceeeeEeccCC----------CCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCC
Q 001319 961 IYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~----------~h~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~~ 1012 (1101)
+.|..+++.+..+.... ........++|+|+++.++ ++...+.+++.++...
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999988886520 0024568999999987655 5667888988887664
No 257
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=6.8e-07 Score=91.39 Aligned_cols=222 Identities=11% Similarity=0.015 Sum_probs=148.2
Q ss_pred ceEEEEeeCCCC--CeeEEEEecCCCCEEEEEeC--CCcEEEEEeecceEEEeeccCC-CCeeEEEEcCCCCEEEEEeCC
Q 001319 835 FKVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD 909 (1101)
Q Consensus 835 ~~~~~~~~~~~~--~i~~l~~s~~~~~~la~g~~--dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~s~s~D 909 (1101)
.+.+.++. |.. ....++|++ ++.++++.+. +++|.++|+.+++.+..+.-.. .....+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 34556664 333 357899998 6655555443 5799999999999988765222 1223455552 2344455567
Q ss_pred CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC--CCCCEEEE
Q 001319 910 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA--LSAPISCA 986 (1101)
Q Consensus 910 g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~~v 986 (1101)
+.+.++|..+.+.+..+... .+ ....+++||+.+++++ ++.|.++|..+.+.+..+..... .-..+..+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g--~~------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ--MK------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC--SS------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCcEEEEEECC--CC------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 89999999998776554322 01 1244667888777754 78999999999998888775321 01246788
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 987 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 987 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.|. +|+..+....++.|.+.|..+++.+.++......... ...+.....+.+++|+|...++++++...++|.+-++.
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 7765555556889999999999999988742110000 00012223457999999666788888899999999987
Q ss_pred CCC
Q 001319 1066 ESE 1068 (1101)
Q Consensus 1066 ~~~ 1068 (1101)
+.+
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=2.4e-06 Score=99.95 Aligned_cols=109 Identities=8% Similarity=0.052 Sum_probs=70.1
Q ss_pred cEEEEecc-CCeEEEEec-CCCCeeeeccCCCCc-----------eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 509 ~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.|..+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35666666 788989998 888888776544320 012232 3445666543 7889999999999
Q ss_pred eEEEecccCC---cceE-EEEEeCCCCEEEEEeC------CCcEEEEECCCCeeeEeecc
Q 001319 576 IKRTYAGFRK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 576 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.+-.+..... ..+. ...+. +..+++++. ++.|+.+|..+|+.+..+..
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 8877653221 0111 11111 346666654 79999999999999887754
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.68 E-value=1.6e-05 Score=93.05 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=96.5
Q ss_pred CcEEEEEeecceEEEeecc--CC--------CCeeEEEEc-CCCC---EEEEEeCCCcEEEEECCCCccccceEEeec--
Q 001319 868 STIHIYNVRVDEVKSKLKG--HQ--------KRITGLAFS-TSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP-- 931 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~~~--h~--------~~V~~l~~s-~d~~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~-- 931 (1101)
+.|..+|..+|+.+-.++. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+-.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999999877642 32 1221 1221 4674 788899999999999999987643322110
Q ss_pred --------CCC-------CC----------------------CCcceEEEcCCCCEEEEE--------------------
Q 001319 932 --------AGK-------TP----------------------TGDTRVQFNADQVRMLVV-------------------- 954 (1101)
Q Consensus 932 --------~~~-------~~----------------------~~v~~~~~s~d~~~l~~~-------------------- 954 (1101)
.+. .+ ..-..++++|+...+.+.
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 00 001246777776655542
Q ss_pred --------------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 955 --------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 955 --------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++.|..||+.+++.+-...... ++..-.+...|.+++.|+.||.++.||.++|+.+-++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 14779999999999876665431 111111222467888899999999999999999988874
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.68 E-value=1.8e-06 Score=86.88 Aligned_cols=204 Identities=11% Similarity=0.110 Sum_probs=134.5
Q ss_pred eEEEEeeCCCCC--eeEEEEecCCCCEEEEEeCCC--cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEE-eCCC
Q 001319 836 KVMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADA 910 (1101)
Q Consensus 836 ~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~-s~Dg 910 (1101)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+... .......+.++++.|... -.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 4455553 4433 4778898 457777777766 8999999999998887643 334333333345555544 4588
Q ss_pred cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC-C-CCCEEEEE
Q 001319 911 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA-L-SAPISCAV 987 (1101)
Q Consensus 911 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~-h-~~~v~~v~ 987 (1101)
.+.+||..+.+.+..+... . ....+++|+..|++++ ++.|.++|..+.+.+..+..... . -..+..+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~-------~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD-------G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEEEETTTCCEEEEEECS-------S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECccCcEEEEEECC-------C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 9999999998877665442 1 2234446777777754 77899999999998888766321 0 13345577
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001319 988 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 988 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~ 1053 (1101)
+. +|+..+..-.++.|.+.|..+|+.+..+......+.....+....-..+++|+|...++++||
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76 787555555788999999999999999986443221100122223457899999655556665
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=1.3e-05 Score=86.83 Aligned_cols=239 Identities=10% Similarity=0.020 Sum_probs=148.0
Q ss_pred EeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC-------------------CCCCeeEEEEecCCCCEEEEEeC
Q 001319 807 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-------------------PPPASTFLAFHPQDNNIIAIGTE 866 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-------------------~~~~i~~l~~s~~~~~~la~g~~ 866 (1101)
..+++++++|+++.++. ++.|..|+..+++....... ....+..+++.+.+++ |.++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 45788999998666665 78999999876554321110 0134788999862444 555555
Q ss_pred CCcEEEEEeecceEEEee---cc-CCCCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcccc
Q 001319 867 DSTIHIYNVRVDEVKSKL---KG-HQKRITGLAFST-SLNILVSSGA-----------------DAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 867 dg~v~iwd~~~~~~~~~~---~~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~v~lwd~~~~~~~~ 924 (1101)
.+.|..+|..+++..... .+ .......+++.+ +|+..++-.. ++.|..||..+++...
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 556888887655322111 11 123478899999 9987776432 3678888887665322
Q ss_pred ceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce--eeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME--RIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~--~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
... .. .....++++++++.|.+++ .+.|.+|++.... ....+... .+ ...+++.++|+++++...
T Consensus 180 ~~~-~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 180 LLK-EL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEE-EE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEE
T ss_pred ecc-CC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecC
Confidence 111 11 3456799999999777754 5789999987521 11112111 23 788999999997776544
Q ss_pred ----------CCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1001 ----------DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1001 ----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.|..+|.. ++.+..+....... ...+..+++ . ++.++++....+.|..+++....
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~--------~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA--------GEHFEQIQE-H-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT--------TSCCCEEEE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCc--------cccceEEEE-e-CCEEEEeecCCCceEEEeccccc
Confidence 4678888874 77766665322110 112334555 3 57777777788999999987554
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=2.4e-06 Score=85.90 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=129.2
Q ss_pred CCEeEEEecCCCCeEEEEc-CC--eEEEEECCCceEEEEeeCCCCCeeE--EEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 805 EAVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
.....+.|+ ++.+..+.+ +| .|+++|+++++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 344778898 676655555 55 79999999999999887533 3333 4443 34555555568999999999999
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCe
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 958 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~ 958 (1101)
.+.++... . ....+++|++.|+.+..++.|.++|..+.+......+.. .+.....+..+.|. +|+..+.. .++.
T Consensus 119 ~~~ti~~~-~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 119 QVRSFNYD-G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEEEECS-S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEECC-C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE-CCEEEEEEccCCe
Confidence 99888743 2 223344577777777667889999999988776655532 11111334456776 67655444 4789
Q ss_pred EEEEEcCCceeeeEeccCC---------CCCCCEEEEEEccCCCEEEEEe
Q 001319 959 LAIYDASKMERIRQWTPQD---------ALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~---------~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
|.+.|..+++.+..+.... ....-...|+|+|+++.|++.+
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999988876531 1124568999999988877766
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=1.9e-05 Score=92.11 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=72.2
Q ss_pred cEEEEecc-CCeEEEEec-CCCCeeeeccCCCCc-----------eEEEEEccCCCE----EEEeecCCCCCceEEEEeC
Q 001319 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSR----LFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 509 ~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~d~~~----l~~~~~~~~~~~~i~iwd~ 571 (1101)
..++.++. ++.|..+|. .+++.+..+...... ...++++|.+.. ++.++. ++.|..+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 35666666 788888998 888888776554321 123556443333 666653 789999999
Q ss_pred CCCeeEEEecccCC---cceE-EEEEeCCCCEEEEEe------CCCcEEEEECCCCeeeEeeccC
Q 001319 572 SEGTIKRTYAGFRK---KSNG-VVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
.+|+.+-....... ..+. ...+. +..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 99998876653321 0111 11121 34566654 3899999999999998877543
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=8.1e-05 Score=87.04 Aligned_cols=376 Identities=10% Similarity=0.026 Sum_probs=197.4
Q ss_pred EEEecCCceEEEEE-cCCceeEEeecCCcCe---------EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC
Q 001319 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV---------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1101)
Q Consensus 468 l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v---------~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 537 (1101)
++.++.++.|..+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44444433488899 8999887775433210 11121 2346788888999999999999998776543
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEeecC--CCCCceEEEEeCCCCeeEEEecccCC---------------------
Q 001319 538 GH----WCT-TMLYSA---DGS-RLFSCGTS--KDGDSFLVEWNESEGTIKRTYAGFRK--------------------- 585 (1101)
Q Consensus 538 ~~----~v~-~~~~s~---d~~-~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 585 (1101)
.. .+. +..+.. +|+ .+++++.. ...++.|..+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111112 234 45554321 01367899999999988766543110
Q ss_pred -------------------cceEEEEEeCCCCEEEEEeC--------------------C----CcEEEEECCCCeeeEe
Q 001319 586 -------------------KSNGVVQFDTTQNHFLAVGE--------------------D----SQIKFWDMDNVNILTS 622 (1101)
Q Consensus 586 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 622 (1101)
.....++++|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 01123567777788887663 2 5899999999999988
Q ss_pred eccCCCC----CCCCe-eEEe---cCCC---EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccc
Q 001319 623 TDAEGGL----PNLPR-LRFS---KEGN---LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1101)
Q Consensus 623 ~~~~~~~----~~v~~-v~~s---~~g~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 691 (1101)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..++......-...... ....+... .++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~----~~~~~~~~-~g~p 381 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT----WASHIDLK-TGRP 381 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC----SEEEECTT-TCCE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc----cccccccc-CCCE
Confidence 7643221 01111 2222 4674 78889999999999999884332221110000 00000000 0000
Q ss_pred cccc-CCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 692 AVSS-GTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 692 l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
+... ..... +.. ........+..|...+. ..-..++++|+...+++...+-...++.....
T Consensus 382 ~~~~~~~~~~---------------~~~-~~~~~~~~~~~P~~~Gg-~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~- 443 (582)
T 1flg_A 382 VEREGQRPPL---------------PEP-GQKHGKAVEVSPPFLGG-KNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS- 443 (582)
T ss_dssp EECTTCSCCC---------------CCT-TCSSCCCEEESSCTTCS-SCSSCCEECTTTCCEEEEEECEEEEEEECCCC-
T ss_pred eEccccCCcc---------------ccc-cccCCCceEECcCCccc-cCCCCceECCCCCEEEEechhcceeeeccccc-
Confidence 0000 00000 000 00000011112211111 11135677887777777665544443322100
Q ss_pred CCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeE
Q 001319 771 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTF 850 (1101)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 850 (1101)
...|. ......+...|++ ...+|.|..||+.+++.+.+..... .+..
T Consensus 444 -----------------~~~g~-----------~~~g~~~~~~p~~----~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~ 490 (582)
T 1flg_A 444 -----------------YTKGS-----------AYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHL-PLWA 490 (582)
T ss_dssp -----------------CCTTS-----------CCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESS-CCCS
T ss_pred -----------------ccCCC-----------ceeccceeecCCC----CCCcceEEEEECCCCCEEEEecCCC-CCcc
Confidence 00010 0000111122321 0125789999999999988776432 2222
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe-eEEEEcCCCCEEE
Q 001319 851 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI-TGLAFSTSLNILV 904 (1101)
Q Consensus 851 l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V-~~l~~s~d~~~l~ 904 (1101)
-.... .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.|..+|+..+
T Consensus 491 g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 491 GVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 12222 45678889999999999999999998887543322 2366667877443
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.56 E-value=5.1e-06 Score=99.80 Aligned_cols=277 Identities=8% Similarity=0.009 Sum_probs=153.3
Q ss_pred EEEEec-CCceEEEEEeccC-----------cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 349 ~v~fsp-dg~~llasg~~d~-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
++++.| +|+ +++.|+.+. .+.+||..+++..... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 667788 776 777776542 5788998877643210 00112333445678889
Q ss_pred CCCEEEEEEC-CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CC-----ceEEEEE-cCCceeE
Q 001319 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKLF 488 (1101)
Q Consensus 417 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d-----~~v~iwd-~~~~~~~ 488 (1101)
+|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++|+ +++.|+ .+ ..+.+|| .+++-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~- 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT- 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE-
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce-
Confidence 9999999984 5589999998764222 1112111 1113455667888 777777 44 5789999 554422
Q ss_pred EeecC-----CcCeEEEecccCCCccEEEEeccCC---------eEEEEecCCCCeeeeccCC---------CCceEEEE
Q 001319 489 NFEGH-----EAPVYSICPHHKENIQFIFSTAIDG---------KIKAWLYDTMGSRVDYDAP---------GHWCTTML 545 (1101)
Q Consensus 489 ~~~~h-----~~~v~~v~~~~~~~~~~l~s~~~d~---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~~ 545 (1101)
.+... ...-...++.. ++...+.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~--~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRS--DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTT--TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCccccccccccccceeec--CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 22100 00000011111 334445554443 5677887765432211111 11234444
Q ss_pred Ec-cCCCEEEEeecCCCC----Cc---eEEEEeCCCCeeEEEe--cccCCcceEEEEEeCCCCEEEEEeCC---------
Q 001319 546 YS-ADGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED--------- 606 (1101)
Q Consensus 546 ~s-~d~~~l~~~~~~~~~----~~---~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 606 (1101)
|. .+++.++.|+..... .. .|.+||..+....... ..........++..|+++.++.||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 54 367777777642100 11 6888898877655543 22222223445677899999998854
Q ss_pred --CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
..+.+||..+.+....-..........+..+.|+|+.++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987765432211111111223456689999999885
No 266
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.54 E-value=0.0056 Score=74.88 Aligned_cols=571 Identities=12% Similarity=0.096 Sum_probs=295.3
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|.+|.-..+|... .|+.+| +..||-..-+... . . -......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~~~~--------~-------~---~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQQHF--------T-------Y---GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEEECS--------C-------T---TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceEEEE--------c-------c---CCCCCceEEEEEEcCCC-cEEE
Confidence 4579999999999733 345666 5556621111000 0 0 01124578888877766 5566
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee-----cCCcCe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPV 497 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-----~h~~~v 497 (1101)
|+.+| +..||..+++.... .......|.++.. .+|. |..++.+ -+..+| .+++ +..+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~-~~~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRK-LTSFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCC-EEEECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCe-EEEeccCCCCcCCCeE
Confidence 66666 88999887542221 1112335777754 3554 4444544 678889 4444 33331 123457
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeee-ccC----CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
.++.... +|.+. .++.+ -+..++..+...... ... ....|.++...+++..|..+. ++-+..+|..
T Consensus 149 ~~i~~d~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETT
T ss_pred EEEEEcC--CCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCC
Confidence 7776533 44444 45544 466777655433221 111 122478888877776555554 2347889988
Q ss_pred CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-----CCCCCCeeEEecCCCEEEEE
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~~~ 647 (1101)
+++..... ......+.++....+|... .|+. +-+.+++..+++......... ....|.++....+|.+. +|
T Consensus 220 ~~~~~~~~-~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iG 295 (758)
T 3ott_A 220 TGQIKQTE-AFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LG 295 (758)
T ss_dssp TTEEEEEE-EEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EE
T ss_pred CCeEEecc-CCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EE
Confidence 77643321 1112256777777776554 4454 458888877665432221110 11246677766666544 45
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
+..| +.++..... .... .......
T Consensus 296 T~~G-l~~~~~~~~---~~~~---------------~~~~~~~------------------------------------- 319 (758)
T 3ott_A 296 TDYG-ISLSRYNSA---LQFI---------------PISQITG------------------------------------- 319 (758)
T ss_dssp ESSS-EEEECCCC----CEEE---------------EHHHHSC-------------------------------------
T ss_pred eCCc-ccccccCCc---eeEE---------------ecccCCC-------------------------------------
Confidence 5555 443321110 0000 0000000
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
......|.++....+|. +..++.+| +..++....... ....+..... ...-....|
T Consensus 320 ------~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v 375 (758)
T 3ott_A 320 ------TGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRI 375 (758)
T ss_dssp ------SCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCE
T ss_pred ------CCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccc---------eeEEeccCCc-------CCCCCCCce
Confidence 01233566676666776 44444555 333332110000 0000000000 000033568
Q ss_pred eEEEecCCCCeEEEEcCCeEEEEECCCceEEEEee-C-----CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec----
Q 001319 808 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S-----PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---- 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~---- 877 (1101)
.++....+|.+-+.. ++.+..||..+++...... . ....|.++...+ ++. |-+|+..+-+.+++..+
T Consensus 376 ~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~ 452 (758)
T 3ott_A 376 RHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQS 452 (758)
T ss_dssp EEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHC
T ss_pred EEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEcccccccc
Confidence 899988888866544 5679999998876543221 1 123577887766 555 55677666788888653
Q ss_pred --ceEE--Eeec---c-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC-CCCcceEEEcCCC
Q 001319 878 --DEVK--SKLK---G-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQ 948 (1101)
Q Consensus 878 --~~~~--~~~~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~ 948 (1101)
.... ..+. + ....|.++...++|...+.++..+-|..+|..+++... .. ..... ...+.++....+|
T Consensus 453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~-~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LF-ADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---EC-TTTSCGGGCEEEEEECTTS
T ss_pred CCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ec-CCCcCCCcccceEEECCCC
Confidence 1111 1111 1 12358999999898877643434458888987754221 11 11111 1346678888888
Q ss_pred CEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcc
Q 001319 949 VRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV 1028 (1101)
Q Consensus 949 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1028 (1101)
.+.+.+ .+.+..|+..+++... +....-....|.++... +|++.+ ++..| |..+|..+.+....-. +
T Consensus 529 ~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~~~~~-----~--- 595 (758)
T 3ott_A 529 LLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDARQQNM-----T--- 595 (758)
T ss_dssp CEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEEEC-------C---
T ss_pred CEEEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeEEecC-----C---
Confidence 887665 4568889877654322 11100114568888764 665444 44555 7888988876543111 0
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1029 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1029 ~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
..... ...+.. ....|..|+.+| +..++...
T Consensus 596 ---~~~~~--~~~~~~-~~G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 596 ---NKRFT--SLLFDP-KEDCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp ---CCCCS--EEEEET-TTTEEEEECBSE-EEEEEC--
T ss_pred ---CCcee--eeEEEC-CCCcEEEecCCc-eEEEChhh
Confidence 11111 233333 245566677776 45566654
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=6e-06 Score=82.94 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=129.3
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeE--EEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
......+.|+ ++.+..+.+ +|.|+++|+++++.+..+ . ...... +++. ++++.+..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 3445678887 345555555 788999999999998887 3 233333 5554 445666666789999999999999
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQL 959 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 959 (1101)
+.++..- ..-..++ +|++.|+.+..++.|.++|..+.+.+....+... +.....+..+.|. +|+..+.. .++.|
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-CCEEEEEECCCCeE
Confidence 9988742 3334444 5788888777789999999999887766655431 1111344566766 67655444 37899
Q ss_pred EEEEcCCceeeeEeccC----------CCCCCCEEEEEEccCCCEEEEEe
Q 001319 960 AIYDASKMERIRQWTPQ----------DALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~----------~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.+.|..+++.+..+... .....-...|+++|+++.|++.+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998887652 11134678999999877666554
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.53 E-value=9.4e-06 Score=98.88 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=132.8
Q ss_pred cEEEEEEe-cCCceEEEEEeccC----cEEEEecCCC-ceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 346 ~V~~v~fs-pdg~~llasg~~d~----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
.+...+|| |||++++.+.+.+| .|+++|+.++ +.+.. .+ ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KV---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CE---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------cc---cCceeeEEEecCCC
Confidence 68899999 99997655544333 5999999988 63220 01 11235789999999
Q ss_pred EEEEEECC-----CeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEec-CCceEEEEE-cCCc-ee--E
Q 001319 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGR-KL--F 488 (1101)
Q Consensus 420 ~las~~~d-----~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iwd-~~~~-~~--~ 488 (1101)
.|+....| ..|.++++.++...... .+. ........+.|+|||+++++.+.. ....|.++| .++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 25888888776432111 222 233456788999999963333322 244688888 4431 22 3
Q ss_pred Eee-cCCcCeEEEecccCCCccEEEEeccC----CeEEEEecCCCCeeee-ccCCCC--ceEEEEEccCCCEEEEeecCC
Q 001319 489 NFE-GHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 489 ~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+. +..+...++.|+. ++.+++....+ ..|..+++.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 333 3344555554432 23344444443 2566666654222112 222222 3445554 4566655443 2
Q ss_pred CCCceEEEEeC-------CCCeeEEEecccCCcceEEEEE------eCCCCEEE-EEeC---CCcEEEEECCCCee
Q 001319 561 DGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF------DTTQNHFL-AVGE---DSQIKFWDMDNVNI 619 (1101)
Q Consensus 561 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~-~~~~---dg~i~iwd~~~~~~ 619 (1101)
++...|.++++ .+++....+..... ...+.+ +++++.++ +.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEP--IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCS--SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCc--eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34556777886 34431333322111 222334 34555443 3332 25678888877654
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=3e-05 Score=83.95 Aligned_cols=255 Identities=9% Similarity=0.025 Sum_probs=142.4
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcc--cc-c---cccccCCccEEEEEEccCCC
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP--FQ-A---SIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~--~~-~---~~~~~h~~~v~~~~~spdg~ 419 (1101)
...+++|+++|+ ++.++..++.|..|+..+++... |........ .. . .........+..+++.+++.
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 467788999987 34567788999999887654321 100000000 00 0 00001123578999998333
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeec-ccCcEEEEEEec-CCCceEEEEecC-----------------CceEEEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIKVW 480 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~-d~~~~~l~s~~~-----------------d~~v~iw 480 (1101)
.|.++...+.|..+|..+++.........+ .......+++.+ +|. +.++... ++.|..|
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEE
Confidence 455555555688888776542111001111 123578899999 887 4554322 4778889
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEE-EeccCCeEEEEecCCC---CeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
| .+++. ..+.........+++++ +++.|+ +-...+.|.+|++... ........ .. ...+++.++|++.++
T Consensus 171 d~~~~~~-~~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 171 DPSTKET-TLLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp ETTTTEE-EEEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEE
T ss_pred eCCCCEE-EEeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEE
Confidence 9 44543 22222223356788866 556554 4466789999998752 11111112 22 788999999987666
Q ss_pred eecCC------CCCceEEEEeCCCCeeEEEecccCC---cceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 556 CGTSK------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 556 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
..... ...+.|..+|.. ++.+..+....+ ..+..+++ .++..+++...++.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 53200 013568888874 777776654432 23555555 3444444444677888888753
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=8.5e-05 Score=79.59 Aligned_cols=225 Identities=14% Similarity=0.071 Sum_probs=137.1
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CCc-eEEEEE-cC
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK-LIKVWE-LS 483 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~-~v~iwd-~~ 483 (1101)
.....++|+|+|+++++-..++.|..||.++.. .. ..........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~----~~~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI----HATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE----EEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE----EEeCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 356789999999977776678899999987632 21 112235688999999998 444443 333 577777 66
Q ss_pred CceeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee----------ccCCCCceEEEEEccCCCE
Q 001319 484 GRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----------YDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 484 ~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------~~~~~~~v~~~~~s~d~~~ 552 (1101)
++....... .......++..+ ++..+++-..++.|.++|......... ..........+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 664322221 122234444322 334455555688888888765322111 01111234555 889888
Q ss_pred EEEeecCCCCCceEEEEeCCC-Cee--EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE--eeccCC
Q 001319 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDAEG 627 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 627 (1101)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++... .+...
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~- 253 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG- 253 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT-
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc-
Confidence 776654 467899999864 322 1122111 123448899999877776678899999975 55432 23322
Q ss_pred CCCCCCeeEEe---cCCCEEEEEEcC
Q 001319 628 GLPNLPRLRFS---KEGNLLAVTTAD 650 (1101)
Q Consensus 628 ~~~~v~~v~~s---~~g~~l~~~~~d 650 (1101)
.....+++|. |+++.|++++..
T Consensus 254 -~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -cCCceEEEEecccCCCCEEEEECCC
Confidence 2356889998 888888877654
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.48 E-value=3.3e-05 Score=77.09 Aligned_cols=205 Identities=9% Similarity=0.099 Sum_probs=133.1
Q ss_pred eEEEEeeCCCC--CeeEEEEecCCCCEEEEEeCCC--cEEEEEeecceEEEeeccCCCC-eeEEEEcCCCCEEEEEeCCC
Q 001319 836 KVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNILVSSGADA 910 (1101)
Q Consensus 836 ~~~~~~~~~~~--~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~~l~s~s~Dg 910 (1101)
+.+.++. |.. -...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+...... -..+++.. ++..+..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCC
Confidence 4555553 443 356899985 56666666654 8999999999998877533221 12344432 33444455688
Q ss_pred cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC--CCCCEEEEE
Q 001319 911 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA--LSAPISCAV 987 (1101)
Q Consensus 911 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~~v~ 987 (1101)
.+.+||..+.+.+..+... . ....+.+|+..|.+++ ++.|.++|..+.+.+..+..... .-..+..+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-------~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-------G--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-------S--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCC-------C--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999999998877665432 1 1234446677777654 78899999999998888776321 013455666
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCccc-CCCCccceEEEEEecCCCCEEEEEE
Q 001319 988 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL-NGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 988 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
+. +|+..+..-.+..|.+.|..+|+.+..+......+.... .+....-..+++|+|..+++++||=
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 777555555688999999999999999986543322100 0112224568999996566666663
No 272
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=1.7e-05 Score=79.78 Aligned_cols=181 Identities=7% Similarity=0.026 Sum_probs=125.9
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
....+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++| .+.+.
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCcE
Confidence 45678887 4666677778889999999999987754 322 2333233445665 445566789999999 89999
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--C---ceEEEEEccCCCEEEEeecCCC
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--H---WCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~---~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+.++... ..-..+++ +++.|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+.. +...
T Consensus 129 ~~ti~~~-~eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw--- 198 (268)
T 3nok_A 129 ERTTRYS-GEGWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIW--- 198 (268)
T ss_dssp EEEEECS-SCCCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEET---
T ss_pred EEEEeCC-CceeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEEC---
Confidence 9888753 23344543 45677777778999999999888776554422 2 34567776 77544 4433
Q ss_pred CCceEEEEeCCCCeeEEEeccc------------CCcceEEEEEeCCCCEEEEEeC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
....|.+.|..+++.+..+... .....+.++++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 3668999999999998887642 1235678999998887777664
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.46 E-value=0.00032 Score=76.42 Aligned_cols=247 Identities=13% Similarity=0.015 Sum_probs=151.9
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+..+|.+..+++ +|+++ ....|+..++....... +......+..++|++.+..|...
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677767754 35443 45568888876543321 11123458899999877666655
Q ss_pred E-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEec
Q 001319 425 F-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1101)
Q Consensus 425 ~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~ 502 (1101)
. ..+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 4 56789999988764322 12222344678999986664 5566666789999997666544443 33355788888
Q ss_pred ccCCCccEEEEeccC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 503 HHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
.|. ++.+.++-... +.|...+++.................+++++++..|..+-. +.+.|..+|+........+.
T Consensus 167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 764 33445554445 78888887754444333334456789999998887776643 46789999987543333333
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 34556663 33344444466778888766666555543
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=2e-05 Score=78.70 Aligned_cols=189 Identities=11% Similarity=0.113 Sum_probs=129.3
Q ss_pred CCCCEeEEEecCCCCeEEEEc-C--CeEEEEECCCceEEEEeeCCCCC-eeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-G--GKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
.......+.|+. +.+..+.+ + ..|+.+|+.+++.+..+...... --.+++. ++++.+..-.++.+.+||..+.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC
Confidence 344566889986 55555544 3 47999999999999988754322 1234443 4556666667899999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCC
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HET 957 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~ 957 (1101)
+.+.++... ..-..++ +|++.|+.+..++.|.++|..+.+.+....+... +.....+..+.+. +|+..+.. .+.
T Consensus 96 ~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 TPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe-CCEEEEEECCCC
Confidence 999988743 2334444 5677777666788999999999887766555431 1111334455555 66655444 478
Q ss_pred eEEEEEcCCceeeeEeccCC----------CCCCCEEEEEEccCCCEEEEEe
Q 001319 958 QLAIYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~----------~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.|.+.|..+++.+..+.... ....-...|+++|+++.|++.+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988876431 1134678999999888777665
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=9.6e-05 Score=79.19 Aligned_cols=237 Identities=9% Similarity=0.019 Sum_probs=140.1
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
.+.+....+.-......++|+|+|+ |+++...++.|..||..+. ... . + .....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~--------------~-~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----H--------------A-TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----E--------------E-ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----E--------------E-eCCCCceeE
Confidence 3444555565456789999999998 6666667889999987653 211 0 1 112468899
Q ss_pred EEccCCCEEEEEECC-C-eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-eeE
Q 001319 413 AWSPDGNYVGVAFTK-H-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF 488 (1101)
Q Consensus 413 ~~spdg~~las~~~d-~-~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-~~~ 488 (1101)
+++++|+++++.... + .|..+|..+++... +..+ ........++..+++. .+++...++.|.++| ..++ .+.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 999999966655433 2 46667777765322 1111 1122334555555554 566666688899999 4432 121
Q ss_pred Eee---------cCCcCeEEEecccCCCcc-EEEEeccCCeEEEEecCC-CCe--eeeccCCCCceEEEEEccCCCEEEE
Q 001319 489 NFE---------GHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 489 ~~~---------~h~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
... +.-.....+ ++ ++. +.++-...+.|..++++. +.. ...+. .......++++++|++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEE
T ss_pred EECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEE
Confidence 111 111234445 34 344 445556678999999875 211 11111 1123567899999987666
Q ss_pred eecCCCCCceEEEEeCCCCeeEE--EecccCCcceEEEEEe---CCCCEEEEEeCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFD---TTQNHFLAVGED 606 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 606 (1101)
.. +.+.|.++|.. ++... .+... .....+++|. |+++.|+++...
T Consensus 229 ~~----~~~~V~~~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 TH----IYNSVVRIAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CB----TTCCEEEECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eC----CCCeEEEECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence 54 36789999975 55533 22222 1257789998 788887776643
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.40 E-value=0.00028 Score=78.13 Aligned_cols=245 Identities=13% Similarity=0.014 Sum_probs=150.7
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~- 425 (1101)
-.|.+..+.+ +|+++ ....|+..++..+.... +......+..++|.+.+..|....
T Consensus 79 ~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D~ 135 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSDV 135 (386)
T ss_dssp SCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEET
T ss_pred CeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEeC
Confidence 4456666644 35443 45678888887654321 112234688999998766666554
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEeccc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHH 504 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~~~ 504 (1101)
..+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.+.+|.....+. ........+++.|
T Consensus 136 ~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp 211 (386)
T 3v65_B 136 TLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP 211 (386)
T ss_dssp TTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc
Confidence 56789999988764222 12222334577899987664 5566666788988886666544443 2335678888876
Q ss_pred CCCccEEEEeccC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 505 KENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 505 ~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
. ++.+.++-... +.|...+++.................++++|++..|..+-. +.+.|..+|+........+...
T Consensus 212 ~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (386)
T 3v65_B 212 M-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQG 287 (386)
T ss_dssp T-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSS
T ss_pred C-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECC
Confidence 4 33444444444 67888887765444444444456789999988887776643 4678999998754433333322
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.. ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 288 ~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 288 LP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22 34556673 33444444567788888876776665554
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.36 E-value=0.00037 Score=74.78 Aligned_cols=229 Identities=8% Similarity=0.022 Sum_probs=144.7
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec----ceEEEeeccCCCCeeE
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----DEVKSKLKGHQKRITG 893 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~ 893 (1101)
+|+.+....|+..|+.+.+....+. ....+..++|++.++.++++-..++.|+.+++.. ......+.........
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4666666779999998876655544 3456789999984455666666678999999876 2222223323345688
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C-CeEEEEEcCCcee
Q 001319 894 LAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIYDASKMER 969 (1101)
Q Consensus 894 l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-~~i~v~d~~~~~~ 969 (1101)
+++.+.+. ..++-...+.|.+.+....... . ... .. ......++++|.+..|..++ . +.|..++.+...
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~-~~~-~~---~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~- 154 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-T-LFR-EN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 154 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEE-E-EEE-CT---TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceE-E-EEE-CC---CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-
Confidence 99987555 4455567788999998764321 1 111 11 14568899999777666654 2 678888876433
Q ss_pred eeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC
Q 001319 970 IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1048 (1101)
Q Consensus 970 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~ 1048 (1101)
...+.... -.....+++++++..|+.+. ..+.|..+|++.......... ......+.+++.. ++.
T Consensus 155 ~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~----------~~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 155 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED----------EKRLAHPFSLAVF--EDK 220 (316)
T ss_dssp EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC----------TTTTSSEEEEEEE--TTE
T ss_pred eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec----------CCccCCcEEEEEE--CCE
Confidence 22222111 45688999999877776554 567899999975433222221 1112245567664 367
Q ss_pred EEEEEECCCeEEEEeCCCCC
Q 001319 1049 QFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1049 ~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++++-...+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 77777778899999987776
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.35 E-value=0.00035 Score=76.04 Aligned_cols=237 Identities=10% Similarity=0.029 Sum_probs=151.6
Q ss_pred EeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 807 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
.+|.+..+ ..+|+.+....|+..++........+.. ...+..++|++.++.++.+-...+.|+.+++..+.....+..
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 45666666 3456666666788888876655444443 445889999984555666656778899999876654333333
Q ss_pred CCCCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C-CeEEEE
Q 001319 887 HQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIY 962 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-~~i~v~ 962 (1101)
.......+++.+.+. +.++-...+.|.+.+++..... .+. ... ......++++|.+..|..++ . +.|..+
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~---~l~--~~~-l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK---VLL--WQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEE--CTT-CSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE---EEE--eCC-CCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 334567899987555 4455556788999998764321 111 111 14568899999777777654 3 678888
Q ss_pred EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEE
Q 001319 963 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1041 (1101)
Q Consensus 963 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~ 1041 (1101)
+++........... ......+++++++..|..+. ..+.|..+|++.......+. .....+.+++
T Consensus 188 ~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~------------~~~~~P~gia 252 (349)
T 3v64_C 188 SMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFAIT 252 (349)
T ss_dssp ETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SSCSSEEEEE
T ss_pred eCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe------------CCCCCceEEE
Confidence 88754332222211 45678999998777666554 56789999987543332222 1122455677
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1042 AHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1042 ~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.. ++.++++-...+.|...+..+++
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 63 46777777778889999876766
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.33 E-value=0.00035 Score=70.92 Aligned_cols=202 Identities=9% Similarity=0.050 Sum_probs=130.1
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
-.+.+..++|+|+++.|+|+...++.|...|.. ++.+...+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 346899999999988788888888999999987 66554211 222 25678889999998777
Q ss_pred EEECCCeEEEEeecCCcccccceeee------cccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEee---
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQID------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFE--- 491 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~------~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~--- 491 (1101)
+.-.++.+.++++.....+....... ........++|+|++++++++.-..-..|..|+ ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 76667889999887654322111111 234457899999999863333332222566666 2222222221
Q ss_pred ----cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC---------CceEEEEEccCCCEEEEeec
Q 001319 492 ----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 492 ----~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.+...+.+++++|. .+.+++.....+.+..+|.... ....+.... .....|+|.++|+..+++ .
T Consensus 166 ~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E 242 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-E 242 (255)
T ss_dssp HHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-T
T ss_pred hccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-C
Confidence 13345788999886 4577788888889999986643 333332221 256899999999866664 2
Q ss_pred CCCCCceEEEEe
Q 001319 559 SKDGDSFLVEWN 570 (1101)
Q Consensus 559 ~~~~~~~i~iwd 570 (1101)
.+.++.+.
T Consensus 243 ----~n~~y~f~ 250 (255)
T 3qqz_A 243 ----PNRFYRFT 250 (255)
T ss_dssp ----TTEEEEEE
T ss_pred ----CceEEEEE
Confidence 44555554
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.00097 Score=71.49 Aligned_cols=231 Identities=11% Similarity=-0.039 Sum_probs=138.8
Q ss_pred ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEeecCC---cc
Q 001319 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---ND 440 (1101)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~---~~ 440 (1101)
....|+..|+.+.+... +......+..++|++++..|..+. .++.|..+++.+. ..
T Consensus 8 ~~~~I~~i~~~~~~~~~--------------------~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp CBSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred CCCeEEEEECCCcceEe--------------------hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc
Confidence 44678999988765332 111234678999999776666554 4688999998862 22
Q ss_pred cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEecccCCCccEEEEeccC-C
Q 001319 441 LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID-G 518 (1101)
Q Consensus 441 ~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d-~ 518 (1101)
... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ........+++.|. ++.++++.... +
T Consensus 68 ~~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 68 YDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPA 143 (316)
T ss_dssp CEE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSC
T ss_pred cEE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCC
Confidence 221 12222245678999976654 5566667889999997676554443 23356788888664 23344443333 6
Q ss_pred eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc-CCcceEEEEEeCCC
Q 001319 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQ 597 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 597 (1101)
.|...+++.................+++++++..|..+-. +.+.|..+|............. .......+++. .+
T Consensus 144 ~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TT
T ss_pred eEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CC
Confidence 8888887654433333334456889999998888777643 4678999998743332222211 11134456664 34
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEee
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
..+++-...+.|..++..+++.+..+
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 44444456778888887766655444
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0023 Score=68.90 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=149.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
....+.+|+|.+++. ++|+| .+|.| +...+.|+. |.... .........+.+|+|+| +..++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~-------~~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRT-------LVLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECC-------CCCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECC-------CCCCCCCccEEEEEecC-CeEEE
Confidence 345799999988776 55655 56654 333343431 11000 00112345788999986 44444
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCcee-EEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~h~~~v~~v~ 501 (1101)
++.++.|.. ..+.|+..........+.+.+..+.+.+++. +++.+. ++.|..-+..|+.- ....++...+..++
T Consensus 95 -~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 -VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp -EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESSTTSSEEEEECSCCCCEEEEE
T ss_pred -EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcCCCCCCEEeecCCCcceEEEE
Confidence 445664433 3444554332211112345678888887776 555554 55543222223322 22234556788888
Q ss_pred cccCCCccEEEEeccCCeEEEEec--CCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1101)
+.+ ++.+++.+...+..+-+|- .+-+.. -......+..+.+.++++.++.+. ++.+++.+...++.-..
T Consensus 170 ~~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 170 RSP--SGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp ECT--TSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EcC--CCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 866 4566666654444444442 111111 122345688899999998776653 56676664333433322
Q ss_pred eccc---CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-CCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 580 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
+... ....+..+.+.+++..+++ +.+|.| .+....++.-..+... .....+.++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 1124677888887665554 456766 3455556554444321 112357889887655 4666677887766
Q ss_pred EE
Q 001319 656 LA 657 (1101)
Q Consensus 656 wd 657 (1101)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.31 E-value=0.00024 Score=78.63 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=151.9
Q ss_pred eEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 808 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
.|.+..+ ..+|+.+....|+.+++........... ...+..++|.+.++.++++-...+.|+.+++..+.....+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3555555 4456666667789999877655444443 4568899999845666666667788999998766544444333
Q ss_pred CCCeeEEEEcCCCCEE-EEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C-CeEEEEE
Q 001319 888 QKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIYD 963 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l-~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-~~i~v~d 963 (1101)
......+++.+.+..| ++-...+.|.+.+++..... ..+ ..+ ......++++|.+..|..++ . +.|..++
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--~l~--~~~--l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLL--WQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--EEE--CSS--CSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--Eee--cCC--CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 3456789998765544 55556678888888754321 111 111 14568899999888777754 3 6788888
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEE
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~ 1042 (1101)
.+........... ......|++++++..|+.+ ...+.|..+|++.......+. .....+.+++.
T Consensus 232 ~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~giav 296 (386)
T 3v65_B 232 MDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFAITV 296 (386)
T ss_dssp TTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------SSCSSEEEEEE
T ss_pred CCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------CCCCCceEEEE
Confidence 8754433333222 4557899999877766654 456789999987543332222 11224556776
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1043 HPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1043 ~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
. ++.++++-...+.|..++..+++
T Consensus 297 ~--~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 297 F--EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEeeCCCCeEEEEECCCCc
Confidence 3 46777777788899999976766
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.23 E-value=0.00012 Score=87.69 Aligned_cols=118 Identities=9% Similarity=0.146 Sum_probs=75.0
Q ss_pred EEEEcc-CCCEEEEeecCCCC-------CceEEEEeCCCCeeEE--EecccCCcceEEEEEeCCCCEEEEEe-CCCcEEE
Q 001319 543 TMLYSA-DGSRLFSCGTSKDG-------DSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKF 611 (1101)
Q Consensus 543 ~~~~s~-d~~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 611 (1101)
..++.+ +++.++.|+...+. ...+.+||..+++... .+..........+++..+++.++.|| .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 88888887753321 1268899998876432 33222222334467788899988888 4568999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cC-----CcEEEEEcccc
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-AD-----NGFKILANAIG 661 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d-----~~i~iwd~~~~ 661 (1101)
||..+.+....-..... ..-.+++..++|++++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99988765544322221 1123456667999999988 34 46788887654
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.00086 Score=74.48 Aligned_cols=230 Identities=9% Similarity=0.009 Sum_probs=148.3
Q ss_pred CeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc----eEEEeeccCCCCee
Q 001319 817 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----EVKSKLKGHQKRIT 892 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~V~ 892 (1101)
.+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 45666667889999998765554443 35678899999845555555556788999988752 22233333445678
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CCeEEEEEcCCce
Q 001319 893 GLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKME 968 (1101)
Q Consensus 893 ~l~~s~d-~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~ 968 (1101)
.|++.+. +++.++-...+.|.+.+++....... +. . .......++++|.+..|..++ .+.|...+++...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--~~--~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FR--E--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--EE--C--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--Ee--C--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8999874 44555556678899999876432211 11 1 114568899999877777654 3678888887544
Q ss_pred eeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCC
Q 001319 969 RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1047 (1101)
Q Consensus 969 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~ 1047 (1101)
........ -.....|++++++..|+.+. ..+.|..+|++.......+.. ...-..+.+++.. ++
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----------~~~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED----------EKRLAHPFSLAVF--ED 301 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC----------SSTTSSEEEEEEE--TT
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC----------CCCCCCCEEEEEe--CC
Confidence 43333322 45688999999888777654 567899999876544333321 1112234566653 35
Q ss_pred CEEEEEECCCeEEEEeCCCCC
Q 001319 1048 NQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1048 ~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.++++-...+.|..++..+++
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCC
T ss_pred EEEEecCCCCeEEEEEcCCCC
Confidence 677777777889999977776
No 285
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00055 Score=76.85 Aligned_cols=250 Identities=10% Similarity=0.056 Sum_probs=146.3
Q ss_pred CEeEEEecC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC-CC----cEEEEEeecc
Q 001319 806 AVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DS----TIHIYNVRVD 878 (1101)
Q Consensus 806 ~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg----~v~iwd~~~~ 878 (1101)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 456789998 455555554 5789999998776554443 455688999999 7885555543 22 233333 333
Q ss_pred eEE--EeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe
Q 001319 879 EVK--SKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 879 ~~~--~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
... ..+. .......++++| ++.++++-..++.|..++..++.... ....... .....++|+|+|++|.+++
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~---~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS---GWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS---SCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC---CcceeEEEcCCCCEEEEEE
Confidence 221 2222 123467889999 67767666677899999998754321 1111111 3467899999999776654
Q ss_pred --CCeEEEEEcCC--cee--eeEeccC---CC---------CCCCEE-EEEEc--------cCCCEEEEEeCCCcEEEEe
Q 001319 956 --ETQLAIYDASK--MER--IRQWTPQ---DA---------LSAPIS-CAVYS--------CNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 956 --d~~i~v~d~~~--~~~--~~~~~~~---~~---------h~~~v~-~v~~s--------~dg~~l~s~~~dg~i~vwd 1008 (1101)
.+.|..++.+. +.. +..+... .+ .-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67899987653 221 1122111 00 011223 45553 4466666666678899998
Q ss_pred CCCCceeEeeCCC----CcCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1009 ADTLRLRCYIAPS----TYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~----~~~~~~-~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.+|......... ...... ......-..+..+++.|.++.++++-...++|+.++++
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 456544333210 000000 00011223688999999557777777777889888764
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.17 E-value=0.0005 Score=77.12 Aligned_cols=251 Identities=8% Similarity=0.016 Sum_probs=148.9
Q ss_pred CEeEEEecCC--CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC---C-cEEEEEeecc
Q 001319 806 AVPCIALSKN--DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---S-TIHIYNVRVD 878 (1101)
Q Consensus 806 ~v~~~~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~v~iwd~~~~ 878 (1101)
....++++|+ +..|..+. .+.|+.+|..+++...... .......+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568899985 34444444 5889999998877665443 455688999999 77755444321 1 1333332221
Q ss_pred eE-EEeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 879 EV-KSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 879 ~~-~~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
.. ...+. .......++++| +|.+.++-..++.|+.++..++...... .. .+.. .....++|+|++..|.+++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~--~~~~-~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VM--MDTK-GSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EE--CSCC-SSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-ec--cCCC-CCcccEEEeCCCCEEEEEeC
Confidence 11 01111 234457789999 6666666667788999998876542111 11 1111 2334699999999777755
Q ss_pred -CCeEEEEEcC--Ccee--eeEeccC---CC---------CCCCEEEEEE---------ccCCCEEEEEeCCCcEEEEeC
Q 001319 956 -ETQLAIYDAS--KMER--IRQWTPQ---DA---------LSAPISCAVY---------SCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 956 -d~~i~v~d~~--~~~~--~~~~~~~---~~---------h~~~v~~v~~---------s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
.+.|..++.+ ++.. ...+... .+ .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 6789998865 2321 1111111 00 0234677999 777877777777889999985
Q ss_pred CCCceeEeeCCCCc-----CCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1010 DTLRLRCYIAPSTY-----LSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1010 ~~~~~~~~~~~~~~-----~~~~-~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
+|...... +... .... .-....-..+..++++|.++.++++-...++|+.++++
T Consensus 373 -~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 56444333 2211 0000 00011223578999995468888877788899988764
No 287
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.17 E-value=0.0017 Score=70.06 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=114.1
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEE-eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE-Ee--ecceE
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY-NV--RVDEV 880 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw-d~--~~~~~ 880 (1101)
..+..+.+.+++..++++.+|.|.. ..+.|+.-.. .......+..+++.+ ++.+++++. +|.++.- |- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788777888887777665432 1222322222 223455788999999 788777664 4555443 21 22233
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
+. ......+..+++.++++.++ ++.+|.+++++.+.++.-.. +....-.....+..+++.+++..++++.++.+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~--~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i- 272 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGE--LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL- 272 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECC--CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEe--ccCCcccCCcceEEEEecCCCEEEEEeCCCeE-
Confidence 32 23456789999999987654 55678887775332221100 11110001134778899999998888888877
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
++..+.++.-..+.........+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 455665654444432111135678888876655 556667898776653
No 288
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.17 E-value=0.0013 Score=66.72 Aligned_cols=204 Identities=13% Similarity=0.122 Sum_probs=131.5
Q ss_pred CCCCEeEEEecCCCCeEEE-Ec-CCeEEEEECCCceEEEEeeCC-CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 803 LEEAVPCIALSKNDSYVMS-AT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~-~~-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
....+..++++|++..|.+ .. ++.|...|.. ++.++.+.-. ....-.+++.+ ++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 5567999999998765555 44 6789999997 8888877532 24577888888 77776666577899999887543
Q ss_pred E---EEeec------cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-e---cCCCCCCCcceEEEcC
Q 001319 880 V---KSKLK------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-I---PAGKTPTGDTRVQFNA 946 (1101)
Q Consensus 880 ~---~~~~~------~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~ 946 (1101)
. +.... ........|+|+|+++.|.++.......+|.+..........+. . ...........++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 22221 12345689999999987777776656666666421000011111 0 0011124678999999
Q ss_pred CCCEEEE-Ee-CCeEEEEEcCCceeeeEeccCCCC------CCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 947 DQVRMLV-VH-ETQLAIYDASKMERIRQWTPQDAL------SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 947 d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
....+.+ ++ .+.+.++|.. ++.+..+....+. -.....|+|.++|+ |...++.+.+++|.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 8776666 43 5778888866 5555555443211 13678999999998 5555777777777543
No 289
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.17 E-value=0.00017 Score=87.71 Aligned_cols=200 Identities=6% Similarity=-0.041 Sum_probs=111.3
Q ss_pred ccCCc-cEEEEEEc-cCCCEEEEEEC-C----CeEEEEeecCC-cccccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 403 KDVPI-SVSRVAWS-PDGNYVGVAFT-K----HLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 403 ~~h~~-~v~~~~~s-pdg~~las~~~-d----~~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
.+|.. .+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34554 78899999 99999997643 2 25999999998 63321 1211 2456899999985 3333333
Q ss_pred -----ceEEEEE-cCCce--eEEee-cCCcCeEEEecccCCCccEEEEecc---CCeEEEEecCCCC-ee--eec-cCCC
Q 001319 475 -----KLIKVWE-LSGRK--LFNFE-GHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMG-SR--VDY-DAPG 538 (1101)
Q Consensus 475 -----~~v~iwd-~~~~~--~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~-~~--~~~-~~~~ 538 (1101)
..|.+++ .++.. ...+. ........+.|++ ||++|+..+. ...|.++|+.++. .. ..+ ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 3577777 44431 22222 2233456677876 6677765553 3468888887753 12 222 2233
Q ss_pred CceEEEEEccCCCEEEEeecCC-CCCceEEEEeCCCC-eeEE-EecccCCcceEEEEEeCCCCEEEE-EeCCCc--EEEE
Q 001319 539 HWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG-TIKR-TYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQ--IKFW 612 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iw 612 (1101)
....++.|+ +|..|+..+... .+...|..+|+.++ +... .+.......+..+ .+.++.|+. ...++. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~--~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI--AVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE--EECSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE--EEECCEEEEEEEeCCEEEEEEE
Confidence 344454443 366665554322 24567888888753 3222 2332222123334 444555554 556665 5555
Q ss_pred EC
Q 001319 613 DM 614 (1101)
Q Consensus 613 d~ 614 (1101)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.15 E-value=0.0019 Score=67.91 Aligned_cols=187 Identities=9% Similarity=0.162 Sum_probs=122.5
Q ss_pred CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC----C---EEEEEeC---CCcEEEEEee--cceEEEeecc-----
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN----N---IIAIGTE---DSTIHIYNVR--VDEVKSKLKG----- 886 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~----~---~la~g~~---dg~v~iwd~~--~~~~~~~~~~----- 886 (1101)
.+.+.+||+ +|+.+..+.. +.+..+..-| +- + ++++... +++|.+|++. +++ +..+..
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv 123 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPI 123 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCE
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCc
Confidence 678999999 8898888863 5677777766 22 1 3333333 5799999884 333 444421
Q ss_pred -CC-CCeeEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-C
Q 001319 887 -HQ-KRITGLAF--STS-LN-ILVSSGADAQLCVWSID---TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 956 (1101)
Q Consensus 887 -h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~v~lwd~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d 956 (1101)
.. ..+..+++ ++. ++ ++++...+|.+..|++. .+............+ ..+..+...+....|.++. +
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCeEEEeccc
Confidence 12 56778888 774 43 68888889999999984 332222211222222 5678899999888888876 5
Q ss_pred CeEEEEEcC-----CceeeeEeccCCCCCCCEEEEEE--ccCCC-EEEEEe-CCCcEEEEeCC-CCceeEeeC
Q 001319 957 TQLAIYDAS-----KMERIRQWTPQDALSAPISCAVY--SCNSQ-LVFATF-CDGNIGVFDAD-TLRLRCYIA 1019 (1101)
Q Consensus 957 ~~i~v~d~~-----~~~~~~~~~~~~~h~~~v~~v~~--s~dg~-~l~s~~-~dg~i~vwd~~-~~~~~~~~~ 1019 (1101)
..|..|+.+ +++.+..+..... ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+..+.
T Consensus 201 ~GIw~~da~p~~~~~~~~v~~~~~g~l-~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 201 EAIWKFSAEPDGGSNGTVIDRADGRHL-TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEECSTTSCSCCEEEEEBSSSSB-CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ceEEEEeCCcCCCCCceEEEEecCCcc-ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 556666754 3455555432211 346888887 66777 677666 67799999997 777777774
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.11 E-value=0.0018 Score=71.90 Aligned_cols=231 Identities=9% Similarity=-0.045 Sum_probs=138.2
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+..++.-.............+.+++|++.+..|+.+-...+.|..++++....... ...+.....
T Consensus 94 I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~~~ 158 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDI 158 (400)
T ss_dssp EEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECSSC
T ss_pred eEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeCCC
Confidence 44444444444555556678999999997766766666678898888865321000 001122234
Q ss_pred ccEEEEEEccCCCEEEEE-ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEEcCC
Q 001319 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSG 484 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd~~~ 484 (1101)
.....+++.+.+..|..+ ...+.|.+.++++..... .+.........+++.|.+.. ++++- +..+.|...+.+|
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---EEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---EEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCC
Confidence 567899999855555554 457789999988654222 22233445789999997764 34443 3347888888777
Q ss_pred ceeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC--CCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
.....+.. .-.....|++.+.. +.+.++-...+.|..+|++.......... ......++++ ++..++..-.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~--- 308 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI--- 308 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEES---
T ss_pred CccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecC---
Confidence 66555532 33567889987643 34445555678899999876544433332 2234556666 3334443322
Q ss_pred CCceEEEEeCCCCeeEEEecc
Q 001319 562 GDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
+.+.|..+|..+|+.+..+..
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEEC
T ss_pred CCCeEEEEEcCCCCceEEEec
Confidence 366788888777766555543
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.00047 Score=77.38 Aligned_cols=240 Identities=8% Similarity=0.115 Sum_probs=138.0
Q ss_pred cEEEEEEcc-CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc----eEEEEEc
Q 001319 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVWEL 482 (1101)
Q Consensus 408 ~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~----~v~iwd~ 482 (1101)
....++|+| ++..|.++...+.|+.+|.+++.... +.........++|+++|+. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 567899998 46667776665789999998765322 3334556889999999985 333333222 3444444
Q ss_pred CCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecC
Q 001319 483 SGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 483 ~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
.+... ..+.. ......+++.+. ++.++++-..++.|..++.+........ .........++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 23322 223456677653 4566666667889999998765542222 222345789999999997666543
Q ss_pred CCCCceEEEEeCCC--Cee--EEEeccc------CC--------cceE-EEEEe--------CCCCEEEEEeCCCcEEEE
Q 001319 560 KDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKFW 612 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i~iw 612 (1101)
..+.|..++... ++. ...+.+. .. .... .+++. +++..+++=...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 367888877542 332 2222221 00 0122 35553 334444444566788888
Q ss_pred ECCCCeeeEeecc---------CC------CCCCCCeeEEecC-CCEEEEEEcCCcEEEEEc
Q 001319 613 DMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 613 d~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~ 658 (1101)
+ .++........ .+ ....-..++++|+ +.++++-..++.|+.++.
T Consensus 368 ~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 T-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp C-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 8 45554333221 00 0123467889985 544444445667777664
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0039 Score=66.56 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=144.5
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE-ECCCeEEEEeec
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYA 436 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~-~~d~~i~vwd~~ 436 (1101)
+||++ ....|+..+++....... ........+.+++|.+.+..|... ...+.|..++..
T Consensus 6 ~ll~~--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~ 65 (318)
T 3sov_A 6 LLLYA--NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN 65 (318)
T ss_dssp EEEEE--CEEEEEEEETTCTTSCCE------------------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--ccCeEEEEECCCCceEEE------------------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEcc
Confidence 35443 456899999886531110 011122357799999966666555 456789999988
Q ss_pred CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEecccCCCccEEEEec
Q 001319 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA 515 (1101)
Q Consensus 437 ~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~ 515 (1101)
++..... .+.........+++.+.+.. ++++-...+.|.+++.+|.....+. ........+++.+.. ..|+.+.
T Consensus 66 g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td 140 (318)
T 3sov_A 66 KTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTD 140 (318)
T ss_dssp SSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEE
T ss_pred CCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEe
Confidence 7642211 12222345678999986664 5566666789999997776554443 344567888887642 3444443
Q ss_pred --cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE
Q 001319 516 --IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1101)
Q Consensus 516 --~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 593 (1101)
..+.|...+++...........-.....+++++++..|..+-. +.+.|..+|+..........+... ....+++
T Consensus 141 ~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav 216 (318)
T 3sov_A 141 WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTL 216 (318)
T ss_dssp CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEE
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEE
Confidence 3577888887654433333333456789999998887776643 467899999875433333332222 3455666
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.. +..+++-...+.|..++..+++....+.
T Consensus 217 ~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 217 FE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 43 3344444467788888887776655554
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.02 E-value=0.0014 Score=73.38 Aligned_cols=240 Identities=9% Similarity=0.099 Sum_probs=138.0
Q ss_pred ccEEEEEEccC--CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC---c-eEEEE
Q 001319 407 ISVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---K-LIKVW 480 (1101)
Q Consensus 407 ~~v~~~~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d---~-~v~iw 480 (1101)
.....++|+|+ +..|.++...+.|+.+|..+++... +.........++|+++|+ ++++.... . .+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 4556666554889999998765432 333445689999999999 55554321 2 23334
Q ss_pred EcCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeec-cCCCCceEEEEEccCCCEEEEe
Q 001319 481 ELSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDY-DAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 481 d~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~-~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+..+... ..+. .-.....+++.+. +|.+.++-..++.|+.++..++.. .... .........++|+|+|++|..+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 4222211 1121 1233455666553 445555666678899998876554 1111 1222234579999999976665
Q ss_pred ecCCCCCceEEEEeCC--CCee--EEEeccc---C-----------CcceEEEEE---------eCCCCEEEEEeCCCcE
Q 001319 557 GTSKDGDSFLVEWNES--EGTI--KRTYAGF---R-----------KKSNGVVQF---------DTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~--~~~~--~~~~~~~---~-----------~~~v~~~~~---------~~~~~~l~~~~~dg~i 609 (1101)
-. ..+.|+.++.. ++.. ...+.+. . -.....+++ .++++.+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 46789887765 3322 1222221 0 012455888 6666666666677889
Q ss_pred EEEECCCCeeeEeeccCCC----------------CCCCCeeEEe-cCCCEEEEEEcCCcEEEEEcc
Q 001319 610 KFWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.++. ++...... ..+. ......++++ ++|.++++-..++.|+.++++
T Consensus 368 ~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 55443322 2110 1123578888 455555554556677776653
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.00 E-value=0.00095 Score=71.31 Aligned_cols=227 Identities=9% Similarity=-0.007 Sum_probs=141.8
Q ss_pred eEEEEcCCeEEEEECCCce--EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE-EeeccCCCCeeEE
Q 001319 818 YVMSATGGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGL 894 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l 894 (1101)
+|+.+....|+.+++.... ....+.+ ......++|.+.++.++.+-...+.|+.+++..+... ..+.........+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4555556778889987653 2122221 2346789999845566666667788999988765321 1222223456789
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CCeEEEEEcCCceee
Q 001319 895 AFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERI 970 (1101)
Q Consensus 895 ~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~~~ 970 (1101)
++.+.+. +.++-...+.|.+++++..... . +. .. .......++++|.+..|..++ .+.|..++.+.....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~--l~--~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRK-V--LF--WQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCE-E--EE--CS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEE-E--EE--eC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 9987544 5555556788999998764321 1 11 11 114568899999877777654 467888888643332
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
...... -.....+++++++..|+.+ +..+.|..+|++......... .....+.+++... +.+
T Consensus 159 ~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~glav~~--~~l 221 (318)
T 3sov_A 159 IIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK------------GSLPHPFALTLFE--DIL 221 (318)
T ss_dssp EEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SCCSCEEEEEEET--TEE
T ss_pred EEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec------------CCCCCceEEEEeC--CEE
Confidence 222221 4567899999977766655 456789999987543322222 1122445666643 567
Q ss_pred EEEEECCCeEEEEeCCCCC
Q 001319 1050 FAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1050 l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.+-...+.|..++..+++
T Consensus 222 ywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCeEEEEECCCCC
Confidence 7777778899999998877
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=0.0024 Score=71.47 Aligned_cols=256 Identities=7% Similarity=-0.008 Sum_probs=150.7
Q ss_pred CEeEEEecC-CCCeEEEEc--CCeEEEEECCCceEEEEeeCC---CCCeeEEEE-------ecCCCCEEEEEeCCC-c--
Q 001319 806 AVPCIALSK-NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGTEDS-T-- 869 (1101)
Q Consensus 806 ~v~~~~~s~-dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~la~g~~dg-~-- 869 (1101)
....++|+| ++..|.++. .+.|++.|++++......... ......++| ++ ++..|.++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 344444444 367999999887776655432 235789999 99 777565555443 2
Q ss_pred ----EEEEEeec-ceEE-----EeeccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCcc------c--
Q 001319 870 ----IHIYNVRV-DEVK-----SKLKGHQKRITGLAFSTS-LNILVSSGADAQLCVWSID-------TWEK------R-- 923 (1101)
Q Consensus 870 ----v~iwd~~~-~~~~-----~~~~~h~~~V~~l~~s~d-~~~l~s~s~Dg~v~lwd~~-------~~~~------~-- 923 (1101)
|.+++... +... ..+.. -.....++++|+ +.++++-..++.|..+|+. ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 66665343 2211 12211 123467889995 4555566677889999998 5543 0
Q ss_pred --cceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcC--Ccee--eeEeccC---CC---------CCCCE
Q 001319 924 --KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KMER--IRQWTPQ---DA---------LSAPI 983 (1101)
Q Consensus 924 --~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~--~~~~--~~~~~~~---~~---------h~~~v 983 (1101)
......... ......++|+|+|..|.+++ .+.|+.++.+ .+.. ...+... .+ .-...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 001122211 13467899999999766654 6788886543 3321 0111111 00 01234
Q ss_pred E-EEEEc-------cCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcC-----------CCc-ccCCCCccceEEEEEe
Q 001319 984 S-CAVYS-------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL-----------SPS-VLNGSQTVYPLVVAAH 1043 (1101)
Q Consensus 984 ~-~v~~s-------~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~-~~~h~~~~~~~~l~~~ 1043 (1101)
. .++.. ++|.+.++-.....|+.++ .+|. +.++.+.... ... .-....-..+..|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 45554 5677777777788999999 5664 3344332110 000 0011223457899999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1044 PLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1044 p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+..+.++++=....+|+.++++...
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 9437777777788899999987755
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.93 E-value=0.025 Score=58.05 Aligned_cols=237 Identities=14% Similarity=0.163 Sum_probs=149.3
Q ss_pred EecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEE
Q 001319 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1101)
Q Consensus 352 fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~ 431 (1101)
.+|..+ ++|.-. ...+.|+|+++.+.+.... -...|..=.|-.+ +.|+..+ +..|.
T Consensus 74 MnP~~~-ViALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~-~~L~lVT-~taVy 129 (365)
T 2xzh_A 74 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNAVY 129 (365)
T ss_dssp ECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCEEEEEECSS-SEEEEEE-SSEEE
T ss_pred eCCCcc-EEEEec-CCeEEEechHHhhhhccee--------------------cCCccEEEEecCC-CeEEEEc-CCcEE
Confidence 388876 666653 6789999999987765311 1347778888744 4455444 34699
Q ss_pred EEeecCCcccccceeeeccc----CcEEEEEEecCCCceEEEEec------CCceEEEEEcCCceeEEeecCCcCeEEEe
Q 001319 432 LYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 432 vwd~~~~~~~~~~~~l~~h~----~~V~~l~~s~d~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~h~~~v~~v~ 501 (1101)
-|++++...... .+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+.-+.+.||.+.-..+.
T Consensus 130 HWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~ 206 (365)
T 2xzh_A 130 HWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 206 (365)
T ss_dssp EEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC
T ss_pred EEcccCCCCCce--eeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEe
Confidence 999986443322 333443 357777778888852 33322 23678899988888889999987666655
Q ss_pred cccCCCcc-EEEEecc---CCeEEEEecCCC---Cee-----eecc----CCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 502 PHHKENIQ-FIFSTAI---DGKIKAWLYDTM---GSR-----VDYD----APGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 502 ~~~~~~~~-~l~s~~~---d~~i~~wd~~~~---~~~-----~~~~----~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
+...+... +++.+.. .+.+++-++... ... ..+. ...+...++..|+.-..+...+. -|.
T Consensus 207 ~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK----~G~ 282 (365)
T 2xzh_A 207 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGY 282 (365)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----TSE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----CcE
Confidence 43322222 3333332 268999988553 111 1111 12345667888887777777664 899
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
|++||++++.++..-+-..+ .+...+......-++.....|.|.--.++....+
T Consensus 283 ihlyDleTgt~i~~nrIS~d-~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 283 IHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEEETTTCCEEEEEECCSS-CEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEEEEcccCcEEEEeccCCC-ceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 99999999999887665544 4544444445455666667777666665554433
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.91 E-value=0.0043 Score=74.57 Aligned_cols=231 Identities=8% Similarity=-0.028 Sum_probs=136.5
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+..++.-.............+.+++|++.+.+|+.+-...+.|+.+++........ ...++....
T Consensus 406 Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l 470 (791)
T 3m0c_C 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDI 470 (791)
T ss_dssp EEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSC
T ss_pred eeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCC
Confidence 33333333344444555677899999997666777766678898888875321000 001122234
Q ss_pred ccEEEEEEccCCCEEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
.....|++.+.++.|..+. ..+.|.+.++++... .. .+.........|++.|.+.++|+.-.+..+.|.+.+.+|.
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 4667899998886666554 567899999886432 21 2223445688999999876533333233477888888887
Q ss_pred eeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--CceEEEEEccCCCEEEEeecCCCC
Q 001319 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 486 ~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
....+.. .-.....|++.+.. +.+.++-...+.|...+++.......+.... ....+|++ ++.+|+..-. +
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~ 621 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---I 621 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---T
T ss_pred ceEEEEeCCCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---C
Confidence 7665543 23567888887543 3444554566789999987655544443322 23445665 3335554432 3
Q ss_pred CceEEEEeCCCCeeEEEec
Q 001319 563 DSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~ 581 (1101)
.+.|...|..+|+.+..+.
T Consensus 622 ~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 622 NEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTEEEEEETTTCCCCEEEE
T ss_pred CCEEEEEeCCCCcceEEee
Confidence 5677777776665555543
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.90 E-value=0.0095 Score=71.63 Aligned_cols=212 Identities=10% Similarity=-0.023 Sum_probs=130.3
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCCeEEEEeecCCccc-ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~ 482 (1101)
....+..|+|.+.+..|... ...+.|+.+++...... .....+.........|++.+.+++ ++++-...+.|.+.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999966666555 45678999998763211 011123334456778999988865 5666677889999997
Q ss_pred CCceeEEeec-CCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 483 SGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 483 ~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+|.....+.. .......|++.+.. |.+.++-.. .+.|...+++.......+.........|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 7776655543 34457889987642 334444323 367888888765555544444567899999988887777643
Q ss_pred CCCceEEEEeCCCCeeEEEecccCC-cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEee
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 623 (1101)
+...|...++........+..... .....+++ .+.+|+.+. ..+.|...|..+++.+..+
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 467899999865544444332211 12233444 344555544 5567777777666555544
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.0049 Score=68.89 Aligned_cols=246 Identities=10% Similarity=0.098 Sum_probs=138.7
Q ss_pred cEEEEEEcc-CCCEEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEE-------ecCCCceEEEEecCC----
Q 001319 408 SVSRVAWSP-DGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-------AYPNKLLCVVTCGDD---- 474 (1101)
Q Consensus 408 ~v~~~~~sp-dg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~-------s~d~~~~~l~s~~~d---- 474 (1101)
....|+|+| ++..|.++. ..+.|++.|.+++........-.+.......++| +++|+. ++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~-lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY-MIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE-EEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCE-EEEEeCCCCCcc
Confidence 467899999 455555554 3467888898886543211100112235899999 999984 33333333
Q ss_pred --ceEEEEE-cC-Ccee-----EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-------CCCe--------
Q 001319 475 --KLIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS-------- 530 (1101)
Q Consensus 475 --~~v~iwd-~~-~~~~-----~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-------~~~~-------- 530 (1101)
..|.+.+ .. |... ..+.... ....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 2366776 22 2321 2222111 2345666653 45666677788899999987 4432
Q ss_pred -----eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC--CCCee--EEEeccc---CC-----------cc
Q 001319 531 -----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI--KRTYAGF---RK-----------KS 587 (1101)
Q Consensus 531 -----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~---~~-----------~~ 587 (1101)
.............++|+|+|++|..+-. ....|+.++. .++.. ...+.+. .+ ..
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 1111222345689999999996555532 3678888554 44432 1223221 00 01
Q ss_pred eE-EEEEe-------CCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC----------------------CCCCCCeeEE
Q 001319 588 NG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----------------------GLPNLPRLRF 637 (1101)
Q Consensus 588 v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v~~ 637 (1101)
.. .++.. +++..+++=..+..|+.++ .++. +.++.+.+ ....-..|++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 23 45554 4555555556778899998 4554 33332211 0122357888
Q ss_pred ecC-CCEEEEEEcCCcEEEEEcccc
Q 001319 638 SKE-GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 638 s~~-g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++ |.+.++=..++.|+.++++..
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCC
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCC
Confidence 886 655555556778888887654
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.70 E-value=0.00052 Score=82.12 Aligned_cols=209 Identities=12% Similarity=-0.030 Sum_probs=124.5
Q ss_pred ccEEEEEEccCCCEEEEEE-CCCeEEEEeecC----CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~-~d~~i~vwd~~~----~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+..++|++++..|..+. ..+.|+.+++.+ ..... .+.........|++.+.+.. ++++-...+.|.+.+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEe
Confidence 3567899999877777664 457899999875 22111 11112223566888866554 455656678899999
Q ss_pred cCCceeEEeec-CCcCeEEEecccCCCccEEEEec-cC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 482 LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTA-ID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~-~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
..|..+..+.. .......+++.+.. .+|+.+. .. +.|...+++.................|++++++..|+.+-.
T Consensus 482 ~dg~~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 482 TKGVKRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp SSSCCEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred cCCCceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 76765555432 22445777876642 3344333 22 67877776544333333333445678999998777766543
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
+.+.|..+++........+.... ......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 ---~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 ---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ---TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ---CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 46789999987543333322111 112233555443 3344445678999999888888777643
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.70 E-value=0.0061 Score=64.10 Aligned_cols=185 Identities=13% Similarity=0.185 Sum_probs=117.8
Q ss_pred EEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCC--Ccc---EEE-Eecc--CCeEEEEecCCCC-eeeeccC-
Q 001319 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIF-STAI--DGKIKAWLYDTMG-SRVDYDA- 536 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~--~~~---~l~-s~~~--d~~i~~wd~~~~~-~~~~~~~- 536 (1101)
+++.....+-+.++|.+|+.+..+.. +.++.+.+-+.- .|+ +++ +... +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 46666667889999999999998864 556666554310 111 223 3333 5789999874222 2322211
Q ss_pred -----CC-CceEEEEE--ccC-CC-EEEEeecCCCCCceEEEEeC-------CCCeeEEEecccCCcceEEEEEeCCCCE
Q 001319 537 -----PG-HWCTTMLY--SAD-GS-RLFSCGTSKDGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1101)
Q Consensus 537 -----~~-~~v~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1101)
.. ..+..+|+ ++. ++ ++++.. +++.+..|++ .+.+.++++.... .+..+...+...+
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 45677888 774 54 444443 3678888887 2346777777654 5777889998899
Q ss_pred EEEEeCCCcEEEEECC-----CCeeeEeeccCCCCCCCCeeEE--ecCCC-EEEEEE-cCCcEEEEEcc
Q 001319 600 FLAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~g~-~l~~~~-~d~~i~iwd~~ 659 (1101)
|+.+-++.-|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+..+.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777777754 3445554432221225677777 45555 566555 57799999986
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.64 E-value=0.00044 Score=82.76 Aligned_cols=207 Identities=10% Similarity=-0.025 Sum_probs=126.3
Q ss_pred CCEeEEEecCCCCeEEEEc--CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 805 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
..+..++|++++..|..+. .+.|+.+++.. ......+.........|++.+.++.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456788998777777765 57899999875 22222222222345678888635666666566789999998765
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
.....+.........|++.|++.+|+.+.. .+.|...++...... . + ... .......|+|+|++..|..++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~--l--~~~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S--L--VTE-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-E--E--SCS-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-E--E--EeC-CCCCccEEEEeccCCEEEEEec
Confidence 444333333355788999997665555443 267887777643211 1 1 111 114567899999877777755
Q ss_pred -CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 956 -ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 956 -d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
.+.|.+++++.......+... ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~~~~~~~~~-~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSCCEEECCCS-SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCceEEEEecC-CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 678999998754332222211 11223345555433 444455667899999998888877665
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.60 E-value=0.023 Score=61.56 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=121.6
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceE--EEEee---CCCCCeeEEEEecCC----CCEEEEEeCC-----CcEE
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV--MTTFM---SPPPASTFLAFHPQD----NNIIAIGTED-----STIH 871 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~----~~~la~g~~d-----g~v~ 871 (1101)
....++|.|||+++++-.+|.|.+++ +++. +..+. ........++|+| + +.+.++-..+ +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776689999998 4442 22221 1234688999999 5 4444444432 6788
Q ss_pred EEEeecc-----eE-EEeec---cCCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCcccc-----
Q 001319 872 IYNVRVD-----EV-KSKLK---GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWEKRK----- 924 (1101)
Q Consensus 872 iwd~~~~-----~~-~~~~~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~lwd~~~~~~~~----- 924 (1101)
.|+...+ +. +..+. +.......|+|.|||.+.++.+.. |.|.-++.+. +...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 8887643 11 22233 111234689999999877765432 4455555443 1000
Q ss_pred -----ceEEeecCCCCCCCcceEEEcC-CCCEEEEEe-CCeE------EEEEcCCce------------------eeeEe
Q 001319 925 -----SVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH-ETQL------AIYDASKME------------------RIRQW 973 (1101)
Q Consensus 925 -----~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~-d~~i------~v~d~~~~~------------------~~~~~ 973 (1101)
...+- ..+. .....++|+| ++.+.++-. .+.+ .|.-+..+. .+..+
T Consensus 188 ~~~~~~~~i~-a~G~--rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 188 GRRGARPEVY-SLGH--RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TCTTSCTTEE-EECC--SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCccEE-EEcC--CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 00000 0011 2356789999 666666522 2221 233222222 11122
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE-eeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1052 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s 1052 (1101)
.. ......++| .+|.++++....+.|...+++...... ......+. .....+..+++.| |+.++++
T Consensus 265 ~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-------~~~~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 265 PQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-------SGFGRLREVQVGP-DGALYVT 331 (352)
T ss_dssp TT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-------ESSCCEEEEEECT-TSCEEEE
T ss_pred CC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-------ccCCCeeEEEECC-CCcEEEE
Confidence 11 234567777 567766666666777777776432100 00000000 1123567899999 6777776
Q ss_pred EE
Q 001319 1053 GL 1054 (1101)
Q Consensus 1053 ~~ 1054 (1101)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.60 E-value=0.064 Score=57.43 Aligned_cols=240 Identities=14% Similarity=0.155 Sum_probs=151.5
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCe
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
.-.+|..+ ++|.-. ..++.|+|+++.+.+.... ....|..=.|-.+ +.|+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~--------------------~~e~VvfWkWis~-~~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEEEET-TEEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--------------------cCCCceEEEecCC-CeEEEEc-CCe
Confidence 34577776 556543 6799999999887765311 1235666677644 4455443 456
Q ss_pred EEEEeecCCcccccceeeeccc----CcEEEEEEecCCCceEEEEec------CCceEEEEEcCCceeEEeecCCcCeEE
Q 001319 430 IQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~----~~V~~l~~s~d~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~h~~~v~~ 499 (1101)
|.-|++.+...... .+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+.-+.+.||.+.-..
T Consensus 127 VyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 203 (494)
T ss_dssp EEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEE
T ss_pred eEEecccCCCCchh--heecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeeccccccchheeeeeeeEE
Confidence 99999976433322 333443 357777788888852 32222 346788999888888899999877666
Q ss_pred EecccCCCc-cEEEEecc---CCeEEEEecCCC---Ce-----eeecc----CCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 500 ICPHHKENI-QFIFSTAI---DGKIKAWLYDTM---GS-----RVDYD----APGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 500 v~~~~~~~~-~~l~s~~~---d~~i~~wd~~~~---~~-----~~~~~----~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+.+...... .++..+.. .+.+++-++... .. ...+. ...+...++..|+.-..+...+. -
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----~ 279 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----C
Confidence 655332222 23333333 278999988653 11 11111 12345678888888877777764 8
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
|.|++||++++.++..-+-... .+...+......-++.....|.|.--.++....+.
T Consensus 280 G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred ceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 9999999999999887665444 55555555555666666677777666666554443
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.55 E-value=0.039 Score=59.75 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=127.3
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCCce-EEEEee---CCCCCeeEEEEecC---CCCEEEEEeC---C----CcE
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGTE---D----STI 870 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~---d----g~v 870 (1101)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999777777899999974 454 222221 12345889999993 2554444432 3 567
Q ss_pred EEEEeecc-------eEE-Eeecc-CCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCcccc----
Q 001319 871 HIYNVRVD-------EVK-SKLKG-HQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWEKRK---- 924 (1101)
Q Consensus 871 ~iwd~~~~-------~~~-~~~~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~lwd~~~~~~~~---- 924 (1101)
..|+.... +.+ ..+.. .......|+|.|||.+.++.+.. |.|.-++.+. +...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence 77776643 111 11221 11234679999999877775432 3444444432 1000
Q ss_pred -ceEEeecCCCCCCCcceEEEcC-CCCEEEEEe--CC--eEEEEEcCCce------------------eeeEeccCCCCC
Q 001319 925 -SVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ET--QLAIYDASKME------------------RIRQWTPQDALS 980 (1101)
Q Consensus 925 -~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~--~i~v~d~~~~~------------------~~~~~~~~~~h~ 980 (1101)
...+. ..+. .....++|+| ++.+.++-. +. .|.+.. .+. .+..+.. . .
T Consensus 187 ~~~~i~-a~G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~--~-~ 258 (354)
T 3a9g_A 187 PNSPIW-SYGH--RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS--E-T 258 (354)
T ss_dssp TTCCEE-EECC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT--C-C
T ss_pred CCCcEE-EEcc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC--C-C
Confidence 00010 0111 3456899999 676666522 22 243332 221 1122211 1 3
Q ss_pred CCEEEEEEc-------cCCCEEEEEeCCCcEEEEeCCCC-cee--EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 981 APISCAVYS-------CNSQLVFATFCDGNIGVFDADTL-RLR--CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 981 ~~v~~v~~s-------~dg~~l~s~~~dg~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
.....++|. .+|.++++....+.|...+++.. +.. ..+. ......+..+++.| |+.++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----------~~~~~rp~~v~~~p-DG~ly 326 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----------KNVFGRLRDVVIDD-DGGIL 326 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----------TTTSCCEEEEEECT-TSCEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----------cCCCCCeeEEEECC-CCcEE
Confidence 457788883 57777777777788888888753 321 1111 01133567899999 67777
Q ss_pred EEEE
Q 001319 1051 AIGL 1054 (1101)
Q Consensus 1051 ~s~~ 1054 (1101)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7664
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.54 E-value=0.013 Score=61.04 Aligned_cols=164 Identities=9% Similarity=0.024 Sum_probs=107.5
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccc-ccCCccEEEEEE---ccCCCEEE
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-KDVPISVSRVAW---SPDGNYVG 422 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~~~v~~~~~---spdg~~la 422 (1101)
-.+++|.+.+..++++.-..++|..|+...+..... .+ ..... ......+..|.| .|+|++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------DGASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------TTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------CCccccCCCcceeeEEEEeccCCCCcEEE
Confidence 346788886555666655789999999875543221 00 00000 011235689999 68988888
Q ss_pred EEEC-------------CCeEEEEeec---CCcccccceeeecc-----------cCcEEEEEEecCCCceEEEEecCC-
Q 001319 423 VAFT-------------KHLIQLYSYA---GSNDLRQHSQIDAH-----------VGAVNDLAFAYPNKLLCVVTCGDD- 474 (1101)
Q Consensus 423 s~~~-------------d~~i~vwd~~---~~~~~~~~~~l~~h-----------~~~V~~l~~s~d~~~~~l~s~~~d- 474 (1101)
+... +..|..||+. +++.+... .|... ......++..++|+ ..++++.-
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~ 158 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM 158 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence 6542 6779999999 77665422 22221 13488999999999 77878877
Q ss_pred ceEEEEEcCCceeEEeecC------CcCeEEEecccCCCccEEEEeccCCeEEEEecCCC
Q 001319 475 KLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 475 ~~v~iwd~~~~~~~~~~~h------~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 528 (1101)
+.|...+.+|+.+..+... ....+.|+++| +|..|++....|.|..+|+...
T Consensus 159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 8888888777755443211 11256889877 5567777766999999998853
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.52 E-value=0.11 Score=53.29 Aligned_cols=261 Identities=10% Similarity=0.117 Sum_probs=151.5
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
...|.+.|+..+..+.+..-. ..+.-.+|..+.++.-. ...+.++|+++...+....... .|.--.|-. .+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis-~~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS-LN 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECS-SS
T ss_pred CCEEEEEECCCCCCccccccc----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecC-CC
Confidence 447888999886554332221 22345788888777755 6789999999999998887653 355555543 34
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.|+..+ +..|+-|++.....+.+.+..+..-
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L------------------------------------------------ 149 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 149 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhc------------------------------------------------
Confidence 555555 4589999987654444444433221
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeec-------CCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
....|.....+++.++++..+- .|.+.+|..+.....
T Consensus 150 -------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----------------------- 193 (365)
T 2xzh_A 150 -------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----------------------- 193 (365)
T ss_dssp -------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-----------------------
T ss_pred -------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc-----------------------
Confidence 1123333334444444433321 256666665432110
Q ss_pred eccCCCCCCCCEeEEEecCC---CCeEEEEc----CCeEEEEECCCc---e------EEEEeeC---CCCCeeEEEEecC
Q 001319 796 NDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF---K------VMTTFMS---PPPASTFLAFHPQ 856 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~d---g~~la~~~----dg~i~vwd~~~~---~------~~~~~~~---~~~~i~~l~~s~~ 856 (1101)
.+. +|......+.+..+ ..+++.+. .+++++.++... . .+..+-. ..+-..++..|+
T Consensus 194 -~ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~- 269 (365)
T 2xzh_A 194 -PIE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE- 269 (365)
T ss_dssp -EEC--CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET-
T ss_pred -eee--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc-
Confidence 000 12211111111111 11333332 268999988432 1 1111111 123356788888
Q ss_pred CCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.-.++..-+.-|.|++||+.++.++..-+--...|..-+......=++.....|.|.--.++...
T Consensus 270 kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 270 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 67788889999999999999999988776666777766665555556666688887777766544
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.49 E-value=0.019 Score=59.77 Aligned_cols=204 Identities=11% Similarity=0.065 Sum_probs=124.7
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEE-eeC----CCC--CeeEEEE---ecCCCCEEEEEe--------
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTT-FMS----PPP--ASTFLAF---HPQDNNIIAIGT-------- 865 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~-~~~----~~~--~i~~l~~---s~~~~~~la~g~-------- 865 (1101)
.-.+++|.+....+..++ .++|..||...+..... +.. ... .+..+.| .| +++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788877555555554 89999999986654433 221 011 3578999 68 678887644
Q ss_pred -----CCCcEEEEEee---cceEEEeec--cC-----------CCCeeEEEEcCCCCEEEEEeCC-CcEEEEECCCCccc
Q 001319 866 -----EDSTIHIYNVR---VDEVKSKLK--GH-----------QKRITGLAFSTSLNILVSSGAD-AQLCVWSIDTWEKR 923 (1101)
Q Consensus 866 -----~dg~v~iwd~~---~~~~~~~~~--~h-----------~~~V~~l~~s~d~~~l~s~s~D-g~v~lwd~~~~~~~ 923 (1101)
.+..|..||+. +++.+.... +. ......++..++|+..++++.. +.|...+.+... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 26789999999 777654432 11 1348899999999999998887 776666665432 2
Q ss_pred cceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCcee--eeEec-cCCCCCCCEEE-EEEccCCCE-EEE
Q 001319 924 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMER--IRQWT-PQDALSAPISC-AVYSCNSQL-VFA 997 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~--~~~~~-~~~~h~~~v~~-v~~s~dg~~-l~s 997 (1101)
................+.++++|||..|++. ..+.+..+|+.+... +..-. +.......... +..-.+|+. |++
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEE
Confidence 2222222222222457799999999988884 388999999884322 11110 11011222344 344457887 445
Q ss_pred EeCCCcEEEEeCCC
Q 001319 998 TFCDGNIGVFDADT 1011 (1101)
Q Consensus 998 ~~~dg~i~vwd~~~ 1011 (1101)
....+.+.+.+.+.
T Consensus 252 ~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 252 ARAPYAISFRSWDN 265 (334)
T ss_dssp EETTEEEEEECSST
T ss_pred cCCCCEEEEECCCC
Confidence 55566666665544
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.48 E-value=0.16 Score=54.34 Aligned_cols=261 Identities=10% Similarity=0.117 Sum_probs=155.5
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
...|.|.|+..+..+....- ...+.-.+|..+.++.-. ..++.|+|+++...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 44788899988655433222 122355788887777654 7899999999999998887654 35566665443
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.|+..+ +..|+-|++.....+.+.+..+..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 455444 4589999987654444444433221
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeec-------CCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
....|.....+++.++++..|- .|.+.+|..+.....+
T Consensus 149 -------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---------------------- 193 (494)
T 1bpo_A 149 -------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------------------- 193 (494)
T ss_dssp -------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----------------------
T ss_pred -------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----------------------
Confidence 1223334444444444443321 2666777654321100
Q ss_pred eccCCCCCCCCEeEEEecCC---CCeEEEEc----CCeEEEEECCCc--------eEEEEeeC----CCCCeeEEEEecC
Q 001319 796 NDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF--------KVMTTFMS----PPPASTFLAFHPQ 856 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~d---g~~la~~~----dg~i~vwd~~~~--------~~~~~~~~----~~~~i~~l~~s~~ 856 (1101)
+. +|......+.+..+ ..+++.+. .+++++.++... +....+.- ..+-..++..|+
T Consensus 194 --ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~- 268 (494)
T 1bpo_A 194 --IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE- 268 (494)
T ss_dssp --EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-
T ss_pred --he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-
Confidence 01 12222222222111 11333332 378999998532 11111111 123356788888
Q ss_pred CCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.-.++..-+.-|.|++||+.++.++..-+-....|..-+......=++.....|.|.--.++...
T Consensus 269 kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 269 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 67788899999999999999999988776667777776666665666667788888777776644
No 311
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.41 E-value=0.00013 Score=58.06 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001319 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1101)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1101)
|+....||+.||..||.|.||..||.+|.+||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999985
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.39 E-value=0.066 Score=57.92 Aligned_cols=230 Identities=16% Similarity=0.104 Sum_probs=119.5
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCc-eeccccceeecccccCccccccccccCCccEEEEEEccC---CCE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~ 420 (1101)
...++|+|.|||+ |+++ ..+|.|.+++ .+++ .+.. + . +..........|+|+|| +.+
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4689999999998 5554 5669999887 3443 1110 0 0 11222456889999998 555
Q ss_pred EEEEEC----C----CeEEEEeecCCc-cc---ccc-eeee-cccCcEEEEEEecCCCceEEEEecC-------------
Q 001319 421 VGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------- 473 (1101)
Q Consensus 421 las~~~----d----~~i~vwd~~~~~-~~---~~~-~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~------------- 473 (1101)
|.++.. + ..|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554433 3 568888876541 01 111 0121 1111246799999997 4555332
Q ss_pred CceEEEEEcCCce--------eEE-eecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCC------------
Q 001319 474 DKLIKVWELSGRK--------LFN-FEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG------------ 529 (1101)
Q Consensus 474 d~~v~iwd~~~~~--------~~~-~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~------------ 529 (1101)
.+.|.-.+.+|+. ... -.++. ....++|.+. ++.+.++-.... .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAG 243 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCC
Confidence 2456556655541 111 12343 3457788763 234443322211 13222 2111
Q ss_pred ------eeeeccCCCCceEEEEEc-------cCCCEEEEeecCCCCCceEEEEeCCCC-eeE--EEecccCCcceEEEEE
Q 001319 530 ------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVVQF 593 (1101)
Q Consensus 530 ------~~~~~~~~~~~v~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~ 593 (1101)
....+.........++|. .+|.++++.. ..+.|...++... +.. ..+.......+..+++
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~ 319 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI 319 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence 111221123357788884 4666655543 2567877777643 322 2232111235677888
Q ss_pred eCCCCEEEEE
Q 001319 594 DTTQNHFLAV 603 (1101)
Q Consensus 594 ~~~~~~l~~~ 603 (1101)
.|||..+++.
T Consensus 320 ~pDG~lyv~~ 329 (354)
T 3a9g_A 320 DDDGGILIST 329 (354)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 8888655554
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.27 E-value=0.065 Score=58.00 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC---CCE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~ 420 (1101)
-...+.|+|.|||+ ++++ ..+|.|.+++ .++... + .+. . +..........|+|+|| +.+
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~---~--~~~-------~--v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLST---Y--AEL-------S--VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEE---E--EEC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccE---e--ecc-------e--EeecCCCCceeEEECCCCCCCCE
Confidence 34688999999998 5554 5679999988 343211 0 000 0 12223457889999998 555
Q ss_pred EEEEEC-C-----CeEEEEeecCCccc--ccc-eeee---cccCcEEEEEEecCCCceEEEEe
Q 001319 421 VGVAFT-K-----HLIQLYSYAGSNDL--RQH-SQID---AHVGAVNDLAFAYPNKLLCVVTC 471 (1101)
Q Consensus 421 las~~~-d-----~~i~vwd~~~~~~~--~~~-~~l~---~h~~~V~~l~~s~d~~~~~l~s~ 471 (1101)
|.++.. + +.|..|+...+..- +.+ ..+. +.......++|.|||. +.++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 555443 2 57888888754211 111 1122 1111236899999996 45543
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.16 E-value=0.025 Score=59.96 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=121.8
Q ss_pred CCCeEEEEc-C------CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC-----CcEEEEEeecce---
Q 001319 815 NDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE--- 879 (1101)
Q Consensus 815 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~--- 879 (1101)
++.+++.|+ . ..+.+||+.+.+-...-..........+... ++.+++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 455555554 2 3589999887653322111111111222223 66788888765 468899987654
Q ss_pred --EEEeeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 880 --VKSKLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 880 --~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
.+..+......-..+. .+++.++.|+.++ .+.+||..+.+....... +.. ..-..++ .-+++.++
T Consensus 93 W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~---r~~~~~~-~~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTA---REGAGLV-VASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSC---CBSCEEE-EETTEEEE
T ss_pred eEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCC---cccceEE-EECCEEEE
Confidence 2322221111122222 2677777777543 588899887654332211 111 1111222 23666666
Q ss_pred EEe------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCC
Q 001319 953 VVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 953 ~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~ 1021 (1101)
.|. ...+.+||..+.+-...-..... ......+. -++++++.|+.+ ..+.+||+.+.+....-.
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-- 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC--
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC--
Confidence 643 25689999887655433222111 11122222 267777777764 468999999876544321
Q ss_pred CcCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCcccc
Q 001319 1022 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~~~~~~ 1073 (1101)
.+.. .... ..+.. ++.+++.|+.+ ..+.+||+.+.+ |..
T Consensus 240 --~p~~-----r~~~-~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 283 (301)
T 2vpj_A 240 --MTTP-----RCYV-GATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV 283 (301)
T ss_dssp --CSSC-----CBSC-EEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred --CCCc-----ccce-eEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111 1111 11222 57788888876 357888887755 554
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.16 E-value=0.097 Score=56.63 Aligned_cols=233 Identities=12% Similarity=0.106 Sum_probs=125.2
Q ss_pred CEeEEEecCCCC-eEEEEcCCeEEEEECCCceEEEEee-------CCCCCeeEEEEecC---CCCEEEEEeC-------C
Q 001319 806 AVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGTE-------D 867 (1101)
Q Consensus 806 ~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~la~g~~-------d 867 (1101)
....++|.|||+ ++++-..|.|++++.. +.....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7776668999999853 33221111 11345688999993 3444444332 2
Q ss_pred CcEEEEEeecc-------eEE-Eeecc---CCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCc--
Q 001319 868 STIHIYNVRVD-------EVK-SKLKG---HQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWE-- 921 (1101)
Q Consensus 868 g~v~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~lwd~~~~~-- 921 (1101)
..|..|++..+ +.+ ..+.. .......|+|.|||.+.++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666432 111 11211 11124679999999766665442 456666655320
Q ss_pred ----------cccceEEeecCCCCCCCcceEEEcC-CCCEEEEEe--CCeEEEEEcCCcee-------------------
Q 001319 922 ----------KRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ETQLAIYDASKMER------------------- 969 (1101)
Q Consensus 922 ----------~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~~i~v~d~~~~~~------------------- 969 (1101)
...... .+. .....++|+| +|.+.++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a----~G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS----YGI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp TCTTTTSTTSCTTEEE----ECC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCcCCCCCCccEEE----EcC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 000000 111 3467899999 566555522 22223322222211
Q ss_pred ------------eeEeccCCCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC
Q 001319 970 ------------IRQWTPQDALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1030 (1101)
Q Consensus 970 ------------~~~~~~~~~h~~~v~~v~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
+..+. +...+..++|.. +|+++++....+.|...+++.++...... +.
T Consensus 252 ~~~~~~~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~------ 318 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK----DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---IL------ 318 (353)
T ss_dssp CCBSSCTTSCCCSEEES----SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ES------
T ss_pred ccCCCCCCccCCeEEeC----CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cc------
Confidence 01111 123566777753 57777777777888888887654332211 00
Q ss_pred CCCccceEEEEEecCCCCEEEEEE-CCCeE
Q 001319 1031 GSQTVYPLVVAAHPLEPNQFAIGL-TDGSV 1059 (1101)
Q Consensus 1031 h~~~~~~~~l~~~p~d~~~l~s~~-~Dg~v 1059 (1101)
......+..+++.| |+.++++.. .+|.|
T Consensus 319 ~~~~~rp~~v~~~p-dG~lyv~td~~~g~I 347 (353)
T 2g8s_A 319 TDRGQRIRDVRTGP-DGYLYVLTDESSGEL 347 (353)
T ss_dssp GGGCCCEEEEEECT-TSCEEEEECSTTEEE
T ss_pred cCCCCceeEEEECC-CCcEEEEEeCCCCEE
Confidence 01123577899999 688777543 34443
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.15 E-value=0.035 Score=59.01 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=121.1
Q ss_pred CCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC----CcEEEEEeecceEEEeeccCC
Q 001319 816 DSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 816 g~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~v~iwd~~~~~~~~~~~~h~ 888 (1101)
+.+++.|+ ...+.+||..+.+-...-..........+..- ++.+++.|+.+ ..+.+||..+++-...-....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 25699999987653322111111111112223 66788888765 678889988764322211111
Q ss_pred CCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-------
Q 001319 889 KRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------- 955 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~------- 955 (1101)
......+..-+++.++.|+.+ ..+.+||..+.+......+ +.. ..-..++ .-+++.++.|.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~---r~~~~~~-~~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM--LTQ---RCSHGMV-EANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC--SSC---CBSCEEE-EETTEEEEECCEESCTTT
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC--cCC---cceeEEE-EECCEEEEECCCCCCCCc
Confidence 111112222367788888765 4588999988653222111 111 1111222 23566666542
Q ss_pred ---CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCCCcCCCc
Q 001319 956 ---ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPS 1027 (1101)
Q Consensus 956 ---d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 1027 (1101)
-..+.+||..+.+-...-..... ...-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-. .+..
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~ 237 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----MPWK 237 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----CSCC
T ss_pred ccccceEEEeCCCCCeEEECCCccch-hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----CCCC
Confidence 34588999987754433222111 111222222 67777777654 468999998876443211 1111
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCcccc
Q 001319 1028 VLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1028 ~~~h~~~~~~~~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~~~~~~ 1073 (1101)
.... ..+.. ++.+++.|+.+ ..+.+||+.+.+ |..
T Consensus 238 -----r~~~-~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~ 277 (306)
T 3ii7_A 238 -----GVTV-KCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVA 277 (306)
T ss_dssp -----BSCC-EEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEE
T ss_pred -----ccce-eEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEe
Confidence 1111 11222 57788888865 468888888765 544
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.11 E-value=0.071 Score=56.98 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=121.2
Q ss_pred EeEEEecCCCCeEEEE-------------cCCeEEEEECCC--ceEE-EEeeC-----CCCCeeEEEEecC-CC--CEEE
Q 001319 807 VPCIALSKNDSYVMSA-------------TGGKISLFNMMT--FKVM-TTFMS-----PPPASTFLAFHPQ-DN--NIIA 862 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~~-~~~~~-----~~~~i~~l~~s~~-~~--~~la 862 (1101)
...+++.|+|..++++ .+|.|.++|.++ ++.. ..+.+ .......+.+.++ ++ .+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4566778888777665 378899999873 2321 12222 1235666776552 23 2444
Q ss_pred EEeC--CCcEEEEEeecc----eEEEeeccC-CCCeeEEEEcCCCCEEEEEeC---C------------CcEEEEECCCC
Q 001319 863 IGTE--DSTIHIYNVRVD----EVKSKLKGH-QKRITGLAFSTSLNILVSSGA---D------------AQLCVWSIDTW 920 (1101)
Q Consensus 863 ~g~~--dg~v~iwd~~~~----~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~---D------------g~v~lwd~~~~ 920 (1101)
+-.. +.+|.+|++..+ ..+..+.+. -...+++++.++|.+.++... | ..=.+|.+..+
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 568899988753 223344432 245789999999998887641 1 22344444443
Q ss_pred ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCC-cee--eeEeccCCCCCCCEEEEEEcc-CCCE
Q 001319 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK-MER--IRQWTPQDALSAPISCAVYSC-NSQL 994 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~-~~~--~~~~~~~~~h~~~v~~v~~s~-dg~~ 994 (1101)
+.. ...-.. .....++|+||++.|.+++ .+.|..|++.. +.. ...+.. ......+++.+ +|.+
T Consensus 212 ~~~-~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 212 DVR-VVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVTGDL 280 (355)
T ss_dssp CCE-EEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTTCCE
T ss_pred eEE-EeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----CCCCceEEEeCCCCcE
Confidence 221 111111 4567899999999988865 68899999863 322 223321 46678999999 5998
Q ss_pred EEEEeCC-CcEEEEeCC--CCceeEeeC
Q 001319 995 VFATFCD-GNIGVFDAD--TLRLRCYIA 1019 (1101)
Q Consensus 995 l~s~~~d-g~i~vwd~~--~~~~~~~~~ 1019 (1101)
.+++..+ +.|..|+.. .+..+.++.
T Consensus 281 wva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8876544 345555544 355666665
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.03 E-value=0.48 Score=50.57 Aligned_cols=197 Identities=12% Similarity=0.081 Sum_probs=111.1
Q ss_pred cEEEEEEccCCCEEEEEE------------CCCeEEEEeecCCcc-cccceeeec-----ccCcEEEEEEec--CCCceE
Q 001319 408 SVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSND-LRQHSQIDA-----HVGAVNDLAFAY--PNKLLC 467 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~------------~d~~i~vwd~~~~~~-~~~~~~l~~-----h~~~V~~l~~s~--d~~~~~ 467 (1101)
..-.++..|+|..+.+++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445666788886666552 689999999974321 2222 2333 234677778766 454223
Q ss_pred EEEecC--CceEEEEE--cCCcee---EEeecC-CcCeEEEecccCCCccEEEEecc-----------------CCeEEE
Q 001319 468 VVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKA 522 (1101)
Q Consensus 468 l~s~~~--d~~v~iwd--~~~~~~---~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~-----------------d~~i~~ 522 (1101)
+++-.. +.+|.+|+ ..+... .++.+. -...+.+++.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56888888 333332 333332 23467777755 5666665431 234444
Q ss_pred EecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-Cee--EEEecccCCcceEEEEEeC-CCC
Q 001319 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQN 598 (1101)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 598 (1101)
++ .++.. .+...-...+.++|+||++.+..+.. ..+.|+.|++.. ++. .+.+.. ......+++.+ +|+
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 44 33222 22222235689999999998887754 367899999763 332 223321 22456688999 588
Q ss_pred EEEEEeCC-CcEEEEECC
Q 001319 599 HFLAVGED-SQIKFWDMD 615 (1101)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~ 615 (1101)
..+++..+ +.|..|+..
T Consensus 280 lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEESCHHHHHSCCTT
T ss_pred EEEEecCCceEEEEECCC
Confidence 77766533 344444443
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.98 E-value=0.041 Score=59.00 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=81.7
Q ss_pred EEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCC----CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-----
Q 001319 810 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV----- 880 (1101)
Q Consensus 810 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~----- 880 (1101)
.....+|.-++.+.++.||.-++......+.+... -..|..+..+| +|.+||..+ +..|.|-.+..+..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 34567888888888999999998755445555443 23688999999 999998886 55799988873310
Q ss_pred -------EEeecc------CCCCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 001319 881 -------KSKLKG------HQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 881 -------~~~~~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.+.+.- ...+|..+.|+|- +..|++-..|++|++||+....
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 112211 3577999999996 4589999999999999998743
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.95 E-value=0.054 Score=57.32 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=119.9
Q ss_pred CCCeEEEEc-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEecCCCCEEEEEeCC-----CcEEEEEeecceEEE-
Q 001319 815 NDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED-----STIHIYNVRVDEVKS- 882 (1101)
Q Consensus 815 dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~~~~- 882 (1101)
++.+++.|+ + ..+..||+.+.+-...-....... .+++. - ++.+++.|+.+ ..+.+||..+.+-..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 2 358899988765333211111111 12222 2 66788888755 358889887764322
Q ss_pred -eeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 883 -KLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 883 -~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
.+......-..+. -+++.++.|+.++ .+.+||+.+.+...... .. ....-.+++. -+++.++.|.
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p--~~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP---MN--TRRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC---CS--SCCBSCEEEE-ETTEEEEECCE
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC---CC--CcccCceEEE-ECCEEEEEeCC
Confidence 2221111112222 3677788887664 47788888765332211 11 1111122222 3556655532
Q ss_pred -------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCCCc
Q 001319 956 -------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTY 1023 (1101)
Q Consensus 956 -------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 1023 (1101)
-..+.+||..+.+-...-..... ......+. -++++++.|+.+ ..+.+||..+.+....-..
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--- 238 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM--- 238 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC---
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC---
Confidence 23588999987654433222111 11122222 267777787754 3689999988765433211
Q ss_pred CCCcccCCCCccceEEEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCcccc
Q 001319 1024 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-----SVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1024 ~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg-----~v~iWd~~~~~~~~~~ 1073 (1101)
+.. ..... .+.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 239 -~~~-----r~~~~-~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 239 -NMC-----RRNAG-VCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -SSC-----CBSCE-EEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCc-----cccCe-EEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 111 11111 1221 577888888764 48899988765 654
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.93 E-value=0.093 Score=55.43 Aligned_cols=194 Identities=8% Similarity=-0.021 Sum_probs=95.8
Q ss_pred CCCEEEEEECC-----CeEEEEeecCCcc--cccceeeecccCcEEEEEEecCCCceEEEEecCC-----ceEEEEE-cC
Q 001319 417 DGNYVGVAFTK-----HLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (1101)
Q Consensus 417 dg~~las~~~d-----~~i~vwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~v~iwd-~~ 483 (1101)
+++.++.|+.+ ..+.+||..+++. ......+......-.++. .+++ +++.|+.+ ..+.+|| .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777777754 3589999888651 111111111111112222 2555 56666643 3588888 44
Q ss_pred Ccee--EEeecCCcCeEEEecccCCCccEEEEeccC-----CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 484 GRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 484 ~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+=...-..........+..-+++.++.|
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 4322 222211111222222 45677777754 357788876654332211111111111122356677777
Q ss_pred ecCCCC-CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCee
Q 001319 557 GTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNI 619 (1101)
Q Consensus 557 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (1101)
+.+... ...+.+||+.+.+....-..........++. -+++.++.|+.+ ..+.+||..+.+.
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 653322 3568999998876554422222111112222 255666666654 3577888776654
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.15 Score=54.02 Aligned_cols=230 Identities=7% Similarity=-0.013 Sum_probs=114.2
Q ss_pred CEEEEEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEE-cCCcee--EE
Q 001319 419 NYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKL--FN 489 (1101)
Q Consensus 419 ~~las~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd-~~~~~~--~~ 489 (1101)
..++.|+. ...+.+||..+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+|| .+++-. ..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3568899988764221 111111111112222 2555 66777654 5688889 544322 11
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCeeeeccCCCCc-eEEEEEccCCCEEEEeecCCCC
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+.........+.+ ++.+++.|+.+ ..+.+||..+.+=...-..+... -.+++. -+++.++.++.....
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNN 162 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCC
Confidence 1111111222222 44677777765 45788887765432221111111 112222 366667776653322
Q ss_pred -----CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeeccCCCCCCC
Q 001319 563 -----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNL 632 (1101)
Q Consensus 563 -----~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1101)
...+.+||+.+.+-...-.......-..++.. +++.++.||.+ ..+.+||..+.+....-..... ..
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~ 239 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GV 239 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BS
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--cc
Confidence 35688999988765444222221112222222 55566666643 4689999988765443222211 11
Q ss_pred CeeEEecCCCEEEEEEcC-----CcEEEEEcccc
Q 001319 633 PRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~ 661 (1101)
...+..-++++++.|+.+ ..+.+||..+.
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 122222267777777754 45777777654
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.78 E-value=0.37 Score=52.01 Aligned_cols=234 Identities=9% Similarity=0.107 Sum_probs=116.7
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC---CCEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~l 421 (1101)
...+.|+|.|||++++++ ...|.|++++.+ +.... .+. + +. .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~--~~~--~-------~~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSA--PLS--G-------VP-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECC--CCB--S-------CC-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-Cceee--Eec--C-------Cc-ccccCCCCCceeEEECCCCCCCCEE
Confidence 467899999999844444 567899998853 32110 000 0 00 012223456789999996 5555
Q ss_pred EEEE-C-------CCeEEEEeecCCc-cccccee-ee--------cccCcEEEEEEecCCCceEEEEecC----------
Q 001319 422 GVAF-T-------KHLIQLYSYAGSN-DLRQHSQ-ID--------AHVGAVNDLAFAYPNKLLCVVTCGD---------- 473 (1101)
Q Consensus 422 as~~-~-------d~~i~vwd~~~~~-~~~~~~~-l~--------~h~~~V~~l~~s~d~~~~~l~s~~~---------- 473 (1101)
.++. . ...|..|++..+. .+..... +. .|. -..++|.|||. +++..|..
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGGCTT
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccCCCC
Confidence 4442 2 2356667765431 1111001 11 132 35799999996 34444332
Q ss_pred --CceEEEEEcCCc-------------eeEEe-ecCCcCeEEEecccCCCccEEEEeccC--CeEEEEecCCCCe-----
Q 001319 474 --DKLIKVWELSGR-------------KLFNF-EGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGS----- 530 (1101)
Q Consensus 474 --d~~v~iwd~~~~-------------~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~----- 530 (1101)
.+.|.-.+.+|. ....+ .+|. ....++|.+. +|. |+++... +.=.+..+..+..
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~ 237 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SNA-LWLNEHGPRGGDEINIPQKGKNYGWPL 237 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TTE-EEEEEECSBSCEEEECCCTTCBCCTTT
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CCC-EEEEecCCCCCcEEeEeccCCcCCCCC
Confidence 245666665554 11122 2333 3677888663 233 4443322 1112222211110
Q ss_pred --------------------------eeeccCCCCceEEEEEcc-------CCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 531 --------------------------RVDYDAPGHWCTTMLYSA-------DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 531 --------------------------~~~~~~~~~~v~~~~~s~-------d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
...+. +......++|.. +|.++++.. ..+.|...++..++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~----~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 238 ATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL----KDKDVIVMSVNGDKVT 312 (353)
T ss_dssp BCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET----TTTEEEEEEEETTEEE
T ss_pred ccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc----cCCEEEEEEeCCCeEe
Confidence 00011 112456777764 455555543 2567777777665443
Q ss_pred EE--ecccCCcceEEEEEeCCCCEEEEE
Q 001319 578 RT--YAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 578 ~~--~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
.. +.......+..+++.|||..+++.
T Consensus 313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 313 EDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 32 211112256778899998755543
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.77 E-value=0.26 Score=54.47 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=79.2
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCc------eE-------EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcE
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTF------KV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 870 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v 870 (1101)
....+.++|||+++++++ +.++.|+|+... +. ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688999999998887 788999998742 11 22222 234577899999 77666666689999
Q ss_pred EEEEeecc----------eEEEeeccCCCCeeEEE-----EcCCCCEEEEEe---CCCc----------EEEEECCCCcc
Q 001319 871 HIYNVRVD----------EVKSKLKGHQKRITGLA-----FSTSLNILVSSG---ADAQ----------LCVWSIDTWEK 922 (1101)
Q Consensus 871 ~iwd~~~~----------~~~~~~~~h~~~V~~l~-----~s~d~~~l~s~s---~Dg~----------v~lwd~~~~~~ 922 (1101)
.-|++... ..+.++.-|..+-...+ -.+||++|++.. .|.. -.+.|+...+.
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence 99999864 46667776655432222 257999999974 4543 36777766543
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.75 E-value=0.78 Score=48.72 Aligned_cols=235 Identities=13% Similarity=0.086 Sum_probs=124.8
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEE--Eee----CCCCCeeEEEEecC---CCCEEEEEe--CCCcEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT--TFM----SPPPASTFLAFHPQ---DNNIIAIGT--EDSTIH 871 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~--~~~----~~~~~i~~l~~s~~---~~~~la~g~--~dg~v~ 871 (1101)
-...+.++|.|||+++++-. .|+|++++..+++... .+. ........|+|+|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999998887 8999999876665422 221 12345789999983 344444322 345566
Q ss_pred EEEeecc----------eEE-Eeec-cCCCCeeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCcccc--
Q 001319 872 IYNVRVD----------EVK-SKLK-GHQKRITGLAFSTSLNILVSSGA-------------DAQLCVWSIDTWEKRK-- 924 (1101)
Q Consensus 872 iwd~~~~----------~~~-~~~~-~h~~~V~~l~~s~d~~~l~s~s~-------------Dg~v~lwd~~~~~~~~-- 924 (1101)
-|.+..+ +.+ ..+. +.......|+|.|||.+.++.+. .|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6655541 111 1222 11123467999999988887653 2444444443210000
Q ss_pred --ceEEeecCCCCCCCcceEEEcCCCCEEEE--EeCCeEEEEEcCCcee------------------eeEeccCCCCCCC
Q 001319 925 --SVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMER------------------IRQWTPQDALSAP 982 (1101)
Q Consensus 925 --~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~~~~------------------~~~~~~~~~h~~~ 982 (1101)
...+. ..++ .....++|+|+|.+.++ +.++.-.|.-+..+.. +..+..+ ...
T Consensus 191 f~~~~i~-a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~---~~a 264 (347)
T 3das_A 191 FPGSPVY-SYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD---EAS 264 (347)
T ss_dssp STTCCEE-EBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT---TCC
T ss_pred CCCCeEE-eeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC---CCC
Confidence 00011 1122 34678999999887776 3343333333333221 1111111 134
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001319 983 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 983 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
...++|. +|..++..-..+.|....++....... ...++ ......+..|+..| |+.++++..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e~~l------~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQAFL------EGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CEEES------TTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCCceecc--eEEee------cCCCCCccEEEECC-CCcEEEEEc
Confidence 5666665 466555555666666666654432100 00000 11223567888888 677766654
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.74 E-value=0.12 Score=54.47 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=113.2
Q ss_pred CCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC-----ceEEEEE-cCCce
Q 001319 417 DGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRK 486 (1101)
Q Consensus 417 dg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~v~iwd-~~~~~ 486 (1101)
++..++.|+.+ ..+..||..+.+-.. ...+......- +++ .-+++ +++.|+.+ ..+.+|| .+.+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~- 88 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRA-GMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQ- 88 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSC-EEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTE-
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccc-eEE-EECCE--EEEEeCcCCCccccceEEECCCCCc-
Confidence 34455556543 357888887754211 11111111111 122 22555 66677654 3578888 4443
Q ss_pred eEEee---cCCcCeEEEecccCCCccEEEEeccCC-----eEEEEecCCCCeeeeccCCCCc-eEEEEEccCCCEEEEee
Q 001319 487 LFNFE---GHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 487 ~~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~ 557 (1101)
-..+. ........+.+ ++.+++.|+.++ .+.+||+.+.+-...-...... -.+++. -+++.++.|+
T Consensus 89 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 163 (302)
T 2xn4_A 89 WTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGG 163 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeC
Confidence 22222 11111222222 446777777553 4667777655422221111111 112222 3666677766
Q ss_pred cCCCC---CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeeccCCCC
Q 001319 558 TSKDG---DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 558 ~~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
.+... ...+.+||+.+.+-...-..........++. -++..++.||.+ ..+.+||..+.+....-.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 53322 3468899998876554322211111122222 245666667654 4689999988765543322211
Q ss_pred CCCCeeEEecCCCEEEEEEcCC-----cEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~-----~i~iwd~~~~ 661 (1101)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 122222333677777777553 4788887765
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.68 E-value=0.61 Score=52.15 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCEeEEEecCCCCeEEEEcC-CeEEEEECCCceEEE--EeeC------CCCCeeEEEEecC---CCCEEEEEeC------
Q 001319 805 EAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMT--TFMS------PPPASTFLAFHPQ---DNNIIAIGTE------ 866 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~d-g~i~vwd~~~~~~~~--~~~~------~~~~i~~l~~s~~---~~~~la~g~~------ 866 (1101)
.....++|.|||+++++-.. +.|++++..+++... .+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999998888775 479998876555432 2221 1345678999993 3444444332
Q ss_pred ------CCcEEEEEeecc-------eEEE-eecc-CCCCeeEEEEcCCCCEEEEEeC
Q 001319 867 ------DSTIHIYNVRVD-------EVKS-KLKG-HQKRITGLAFSTSLNILVSSGA 908 (1101)
Q Consensus 867 ------dg~v~iwd~~~~-------~~~~-~~~~-h~~~V~~l~~s~d~~~l~s~s~ 908 (1101)
...|.-|++..+ +.+. .+.. .......|+|.|||++.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235665665432 1121 1221 1234789999999998777654
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.58 E-value=0.21 Score=53.01 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=114.8
Q ss_pred CeEEEEECCCceEEE-EeeCCCCCeeEEEEecCCCCEEEEEeC----CC-------cEEEEEeecceEEEeeccCCCCee
Q 001319 825 GKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTE----DS-------TIHIYNVRVDEVKSKLKGHQKRIT 892 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~----dg-------~v~iwd~~~~~~~~~~~~h~~~V~ 892 (1101)
..+..||..+.+-.. .+..+.......+... ++.+++.|+. ++ .+.+||..+++-...-.....+-.
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 679999998776432 2222223333333444 6788888873 11 277888777643221111111111
Q ss_pred EEEEcCCCCEEEEEeCC--------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeC-------C
Q 001319 893 GLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE-------T 957 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d-------~ 957 (1101)
..+..-+++.++.||.+ ..+.+||..+.+-.....+. . ......+..-+++.++.|.. .
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-----~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-----Y-VVYGHTVLSHMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-----S-CCBSCEEEEETTEEEEECCBCTTSCBCC
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-----C-cccceeEEEECCEEEEEeCCCCCCcccc
Confidence 11112256777777743 45889999876532221111 1 11222223345566666432 4
Q ss_pred eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeEeeCCCCcCCCcccCCC
Q 001319 958 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1032 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 1032 (1101)
.+.+||..+.+-...-..... ...-.++. -++++++.|+.++ .+.+||+.+.+....-. .+...
T Consensus 166 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r---- 234 (315)
T 4asc_A 166 KMCVYDPKKFEWKELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER---- 234 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC----
T ss_pred eEEEEeCCCCeEEECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc----
Confidence 689999887654332221111 11122222 2677777877654 48899998875544321 11111
Q ss_pred CccceEEEEEecCCCCEEEEEECCC--------------eEEEEeCCCCCCccccC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDG--------------SVKVMEPSESEGKWGVS 1074 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg--------------~v~iWd~~~~~~~~~~~ 1074 (1101)
... ..+.. ++.+++.|+.++ .+.+||+.+.+ |...
T Consensus 235 -~~~-~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 235 -SSL-SLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp -BSC-EEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred -cce-eEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 111 11221 567888888743 36778877765 5543
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.50 E-value=0.11 Score=55.02 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=121.4
Q ss_pred ecCCCCeEEEEc-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEecCCCCEEEEEeC----C-----CcEEEEEee
Q 001319 812 LSKNDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTE----D-----STIHIYNVR 876 (1101)
Q Consensus 812 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~----d-----g~v~iwd~~ 876 (1101)
..-++.+++.|+ + ..+.+||..+.+-...-....... .+++. - ++.+++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 344666777665 2 458999988765433211111111 12222 2 5677777775 2 468888887
Q ss_pred cceEEEe--eccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 877 VDEVKSK--LKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 877 ~~~~~~~--~~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
+.+-... +......-..+. -+++.++.|+.+ ..+.+||..+.+......+. .. ..-.+++.. +++
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~---r~~~~~~~~-~~~ 170 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TR---RIGVGVAVL-NRL 170 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SC---CBSCEEEEE-TTE
T ss_pred CCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cc---ccceEEEEE-CCE
Confidence 7643222 211111122222 267777777754 35888998876533221111 11 111122222 566
Q ss_pred EEEEEe------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEee
Q 001319 950 RMLVVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 950 ~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~ 1018 (1101)
.++.|. ...+.+||..+.+-...-..... ......+.+ ++++++.|+.+ ..+.+||+.+.+....-
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666543 24689999887654332221111 112223333 67777777764 56999999887654322
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCcccc
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-----SVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg-----~v~iWd~~~~~~~~~~ 1073 (1101)
. .+.. .... +++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 248 ~----~p~~-----r~~~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 292 (308)
T 1zgk_A 248 P----MKHR-----RSAL--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 292 (308)
T ss_dssp C----CSSC-----CBSC--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred C----CCCC-----ccce--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence 1 1111 1111 11111 577888888653 57888887765 543
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.28 E-value=0.3 Score=51.69 Aligned_cols=232 Identities=6% Similarity=-0.052 Sum_probs=113.4
Q ss_pred ccCCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC----C-----ceEEEEE
Q 001319 415 SPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWE 481 (1101)
Q Consensus 415 spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~----d-----~~v~iwd 481 (1101)
.-++..++.|+.+ ..+.+||..+++-.. ...+......- +++ ..+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3356777777632 358899988764221 11111111111 122 22555 5666665 2 3578888
Q ss_pred -cCCceeEEee---cCCcCeEEEecccCCCccEEEEeccC-----CeEEEEecCCCCeeeeccCC--CCceEEEEEccCC
Q 001319 482 -LSGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADG 550 (1101)
Q Consensus 482 -~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~ 550 (1101)
.+.+ -..+. ........+.+ ++.+++.|+.+ ..+.+||..+.+-...-... ......+.+ ++
T Consensus 97 ~~~~~-W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 97 PMTNQ-WSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR 169 (308)
T ss_dssp TTTTE-EEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred CCCCe-EeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC
Confidence 4443 22221 11111222222 44677777654 35777887665422211111 111122222 66
Q ss_pred CEEEEeecCCCC-CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeec
Q 001319 551 SRLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 551 ~~l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~ 624 (1101)
+.++.|+.+... ...+.+||+.+.+-...-..........++.. ++..++.||.+ ..+.+||+.+.+....-.
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 677776653222 35688999988765433221111111222222 55666667654 569999998876554332
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcC-----CcEEEEEcccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~ 661 (1101)
.... .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 249 ~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 249 MKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2211 11222222367777777643 34667776654
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.27 E-value=0.36 Score=51.23 Aligned_cols=216 Identities=8% Similarity=-0.057 Sum_probs=103.5
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC-----C------ceEEEEE-cCCceeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----D------KLIKVWE-LSGRKLF 488 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-----d------~~v~iwd-~~~~~~~ 488 (1101)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+|| .+++- .
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~ 80 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-L 80 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-E
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeE-E
Confidence 34454 468999998865321 12222222233333344666 5666662 1 1267788 44432 2
Q ss_pred EeecC---CcCeEEEecccCCCccEEEEeccC--------CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 489 NFEGH---EAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 489 ~~~~h---~~~v~~v~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.+... ......+.+ ++.+++.|+.+ ..+.+||..+.+=...-..+.......+..-+++.++.|+
T Consensus 81 ~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 22111 111112222 44667777743 3577888776532221111111111112224666667766
Q ss_pred cCC--CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeeeEeeccCCCCC
Q 001319 558 TSK--DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 558 ~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
... .....+.+||+.+.+-...-..........++. -+++.++.||.++ .+.+||..+.+....-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 421 113468999998876544322211111122222 2566677777543 588999988765544322211
Q ss_pred CCCeeEEecCCCEEEEEEcC
Q 001319 631 NLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d 650 (1101)
.....+..-++++++.|+.+
T Consensus 234 r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEE
T ss_pred ccceeEEEECCEEEEECCcc
Confidence 22222223367777777653
No 332
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.20 E-value=1.5 Score=45.79 Aligned_cols=169 Identities=9% Similarity=0.067 Sum_probs=97.1
Q ss_pred EecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc--------------CCeEEEEe
Q 001319 459 FAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI--------------DGKIKAWL 524 (1101)
Q Consensus 459 ~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~--------------d~~i~~wd 524 (1101)
|+.+|..+++.....++.|...+.+|.....+... .+..+ ++ +|.+|+-+.. ...|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~i--~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMYI--NA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEEE--EE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceeeE--EE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34566654444444456666666666655555432 12333 23 4455555543 24577777
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
++..+....... .+..+++++++|+....+.++...|...++......+... +.. .+++++++.|+-.+
T Consensus 95 ~dg~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~-~~~-----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN-HYL-----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES-SCC-----CCSEEETTEEEEEC
T ss_pred CCCCcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC-CCc-----eEeeEECCEEEEEe
Confidence 766554333221 1336788999998765223356778888887544433332 211 34678888888766
Q ss_pred C-CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 605 E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 605 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
. ...|++.++..+.....+. +. ....++|++.+|+-....
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~--~~----~~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD--CN----CYKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC--SC----EEEEEEEETTEEEEEEGG
T ss_pred CCCceEEEEECCCCCEEEEeC--CC----ccceeeecCCEEEEEEcC
Confidence 4 6788888887766544332 11 123466888888876644
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.03 E-value=0.24 Score=53.75 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=111.9
Q ss_pred CCCeEEEEc--CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC-C---------CcEEEEEeecc
Q 001319 815 NDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-D---------STIHIYNVRVD 878 (1101)
Q Consensus 815 dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-d---------g~v~iwd~~~~ 878 (1101)
++++++.|+ ...+.+||+.+ +..+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 677777775 45799999863 22222222111111222222 5677777776 2 46888998776
Q ss_pred eEEEeeccC-CCCeeEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEECC
Q 001319 879 EVKSKLKGH-QKRITGLAFSTSLNILVSSGAD---------------------------------------AQLCVWSID 918 (1101)
Q Consensus 879 ~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~D---------------------------------------g~v~lwd~~ 918 (1101)
+=...-... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 432211111 1222222222577888888865 468899998
Q ss_pred CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-------CCeEEEEEc--CCcee--eeEeccCCCCCCCEEEEE
Q 001319 919 TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------ETQLAIYDA--SKMER--IRQWTPQDALSAPISCAV 987 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-------d~~i~v~d~--~~~~~--~~~~~~~~~h~~~v~~v~ 987 (1101)
+.+-.....+ +... ..-.+++.. ++++++.|. ...+.+||+ .+.+- +..+... .......+
T Consensus 177 ~~~W~~~~~~--p~~~--~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~~~~~~ 248 (357)
T 2uvk_A 177 TQQWSYAGES--PWYG--TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGVAGGFA 248 (357)
T ss_dssp TTEEEEEEEC--SSCC--CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCCBSCEE
T ss_pred CCcEEECCCC--CCCC--cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---cccccceE
Confidence 8654332211 1111 111223332 555555532 245777876 43332 2222111 11111112
Q ss_pred EccCCCEEEEEeCC----------------------CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 988 YSCNSQLVFATFCD----------------------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 988 ~s~dg~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
...++++++.|+.+ ..+.+||+.+.+....-. .+.....| .++. -
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~------~~~~--~- 315 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRAYG------VSLP--W- 315 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCBSS------EEEE--E-
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcccc------eeEE--e-
Confidence 23367777777632 257899998765443211 11111111 1222 1
Q ss_pred CCCEEEEEECCC------eEEEEeCCCCC
Q 001319 1046 EPNQFAIGLTDG------SVKVMEPSESE 1068 (1101)
Q Consensus 1046 d~~~l~s~~~Dg------~v~iWd~~~~~ 1068 (1101)
++.+++.||.++ .|.+.++++++
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 578999999764 35556777766
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.031 Score=59.17 Aligned_cols=200 Identities=10% Similarity=0.096 Sum_probs=108.6
Q ss_pred CEEEEEeCCCcEEEEEeecceEEEeeccC-CCCeeEEEE--c-CCCCEEEEE-eCCCcEEEEECCCCccccceEEeecCC
Q 001319 859 NIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAF--S-TSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAG 933 (1101)
Q Consensus 859 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~--s-~d~~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~ 933 (1101)
.++++++.||.|+-+|..+|+.+-.+... ..++....- . .++..++.. +.||.|..++..+|..+....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999887654 122222110 0 123333333 689999999998875442222111110
Q ss_pred CCCCCcceEEE------------cCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCC----CCEEEEEEc-----cCC
Q 001319 934 KTPTGDTRVQF------------NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS----APISCAVYS-----CNS 992 (1101)
Q Consensus 934 ~~~~~v~~~~~------------s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~----~~v~~v~~s-----~dg 992 (1101)
..-+.. +.++..++.+.++.+...|+.+|+.+..+....... ....|.... ..+
T Consensus 91 -----~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 91 -----TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp -----TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred -----ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 011121 245544455679999999999999999887642100 001111111 124
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCcc
Q 001319 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1071 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~ 1071 (1101)
..|+.|..+..+.+.+ ++|+ +.......+....+ ...+. ..-..+. |+.+ +.++.||.|...|..+|+..|
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~---~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL---DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT---THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEeccccccccc---ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5677788777777777 4553 21111000100000 00000 0000011 3455 557889999999999999888
No 335
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.84 E-value=0.31 Score=60.53 Aligned_cols=237 Identities=13% Similarity=0.160 Sum_probs=138.3
Q ss_pred EecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEE
Q 001319 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1101)
Q Consensus 352 fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~ 431 (1101)
.+|..+ ++|.- ...++.|+|+++.+.+.... -...|..=.|-.+. .|+..+ +..|.
T Consensus 73 MnP~~~-iiALr-ag~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~aVy 128 (1630)
T 1xi4_A 73 MNPASK-VIALK-AGKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DNAVY 128 (1630)
T ss_pred cCCCcc-eEEEe-cCCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CCeEE
Confidence 466665 66654 36799999999877665311 13367777776444 444443 34699
Q ss_pred EEeecCCcccccceeeecc----cCcEEEEEEecCCCceEEEEe------cCCceEEEEEcCCceeEEeecCCcCeEEEe
Q 001319 432 LYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTC------GDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 432 vwd~~~~~~~~~~~~l~~h----~~~V~~l~~s~d~~~~~l~s~------~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~ 501 (1101)
-|++.+...... .+..| ...|..-.-+++.+++ +++| .-.|.+.+|..+.+.-+.+.||.+.-..+.
T Consensus 129 HW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~ 205 (1630)
T 1xi4_A 129 HWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 205 (1630)
T ss_pred EeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccccchhhhHhHhhhheec
Confidence 999976433222 23333 3467777888888862 3222 245788999977777777888877655554
Q ss_pred cccCCCccEEEE-ecc---CCeEEEEecCCC---Ceee-----eccC----CCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 502 PHHKENIQFIFS-TAI---DGKIKAWLYDTM---GSRV-----DYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 502 ~~~~~~~~~l~s-~~~---d~~i~~wd~~~~---~~~~-----~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
+...+....|++ +.. .+.+++-++... ...+ .+.. ......++..|+.-..+...+. .|.
T Consensus 206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G~ 281 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGY 281 (1630)
T ss_pred cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cce
Confidence 432222222333 221 268888888553 1111 1111 1234557777777766666654 889
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
|+++|+.++.++..-+-... .+...+......-++.....|.|.--.+.....+
T Consensus 282 ~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred EEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 99999999988766543333 3433333333344455556666655555544443
No 336
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.81 E-value=0.82 Score=56.94 Aligned_cols=266 Identities=12% Similarity=0.154 Sum_probs=141.1
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
...|.|.|+..+..+....- ...+.-.+|..+.++.-. ..++.|+|+.+...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 44788889887664422211 122245778776666543 7899999999988887776643 35555554333
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.|+..+ +..|.-|++.....+.+.+..+..-.
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~----------------------------------------------- 149 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA----------------------------------------------- 149 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhcc-----------------------------------------------
Confidence 444444 45799999976444444444322211
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEee-------cCCeEEEEEecCCCCCC-CCCeeeeccccccccCCccce
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-------SNGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~v~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
...|.....+++.++++..| -.|.+.+|........+ +|.. +...
T Consensus 150 --------------~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha-------------~~F~ 202 (1630)
T 1xi4_A 150 --------------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-------------ASFA 202 (1630)
T ss_pred --------------cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhH-------------hhhh
Confidence 12233333344444443322 23677777665432211 1110 0111
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCc---eE------EEEeeC---CCCCeeEEEEecCCCCEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF---KV------MTTFMS---PPPASTFLAFHPQDNNIIA 862 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~---~~------~~~~~~---~~~~i~~l~~s~~~~~~la 862 (1101)
...+.+..+...+.|.+.-. ..+++++|.++... .. +..+-. ...-..++..++ .-.++.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~-------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy 274 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRG-------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVF 274 (1630)
T ss_pred eeccCCCCCCceEEEEEEec-------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEE
Confidence 11111111222222222210 01368888887432 11 111111 122345677787 667788
Q ss_pred EEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 863 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 863 ~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
..+.-|.|++||+.++.++..-+-....|...+......-++.....|.|.--.++..
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 8889999999999999887655444555555554444333444456666666555553
No 337
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.80 E-value=0.096 Score=56.19 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc-----ccce--eecccccCccccccccccCCccEEEEEEcc--
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFK--IWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~-----~~~~--~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-- 416 (1101)
.|..+..||+|++| |.. .+..|.|-.+..+..... .+++ .|.+.. +......+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~lL-Al~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDLL-CLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSEE-EEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCEE-EEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEecccc
Confidence 68889999999955 543 456899988874432221 1111 111110 0111367899999999
Q ss_pred -CCCEEEEEECCCeEEEEeecCCccccc-c------eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQ-H------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 417 -dg~~las~~~d~~i~vwd~~~~~~~~~-~------~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
.|..|++-..|+.|++||+........ + ..+......|.+++|..++-.+++++....|.|+-.-
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 466899999999999999986332111 0 0111233578899999887766666666777766544
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.78 E-value=0.82 Score=48.44 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=106.8
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC----Cc-------eEEEEE-cCCcee
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----DK-------LIKVWE-LSGRKL 487 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~----d~-------~v~iwd-~~~~~~ 487 (1101)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++| .+++-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W- 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW- 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEE-
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcE-
Confidence 3444443 37889988765322 12221112222223344555 6666662 11 267788 44432
Q ss_pred EEee---cCCcCeEEEecccCCCccEEEEeccC-------CeEEEEecCCCCeeeeccCCCCce-EEEEEccCCCEEEEe
Q 001319 488 FNFE---GHEAPVYSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSC 556 (1101)
Q Consensus 488 ~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~v-~~~~~s~d~~~l~~~ 556 (1101)
..+. ........+.+ ++.+++.|+.+ ..+.+||..+.+=...-..+.... .+++. .+++.++.|
T Consensus 91 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G 165 (318)
T 2woz_A 91 VGLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLG 165 (318)
T ss_dssp EECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEEC
T ss_pred EECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEc
Confidence 2221 11111122222 44677777754 246777776543222211111111 12222 466777776
Q ss_pred ecCCC--CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeeccCCCC
Q 001319 557 GTSKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 557 ~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
+...+ ....+.+||+.+.+-...-..........++. -++..++.||.+ ..+.+||..+.+....-.....
T Consensus 166 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 243 (318)
T 2woz_A 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE- 243 (318)
T ss_dssp CEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-
T ss_pred CCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 64211 13458999998876554422222111122222 245666667643 3577899887765443222211
Q ss_pred CCCCeeEEecCCCEEEEEEcC--------------CcEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTAD--------------NGFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d--------------~~i~iwd~~~~ 661 (1101)
.....+..-++++++.|+.+ ..+.+||..+.
T Consensus 244 -r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 244 -RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp -CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred -ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 11222223366677776643 34666776554
No 339
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.57 E-value=0.009 Score=47.22 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC--HHHHHHHHhccCHHHHHHHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYL 57 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l 57 (1101)
++|+.+-|++||...||.+++.+|.+|.|+..+ ...-.+-+++-.|..++.+-
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQ 64 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQ 64 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHH
Confidence 679999999999999999999999999998875 11234445556665444443
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.53 E-value=2.8 Score=43.68 Aligned_cols=204 Identities=9% Similarity=0.110 Sum_probs=115.0
Q ss_pred EEEccCCCEEEEEECC--------------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe--cCCc
Q 001319 412 VAWSPDGNYVGVAFTK--------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC--GDDK 475 (1101)
Q Consensus 412 ~~~spdg~~las~~~d--------------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~--~~d~ 475 (1101)
--++++|++|+.+... ..|+..++++++... +... . +..|+++++.++++.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD--P--CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS--C--EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC--C--ccEEEEeCCEEEEEeecCCCCc
Confidence 3457899999887643 357777777765322 2221 1 2378889986444432 2344
Q ss_pred eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEE
Q 001319 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 476 ~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
.|..-+.+|.....+..+.. .++.+ +++.|+-.+. ..+|..-+++.......+.. ... ..+.|++.+|+
T Consensus 130 ~Iy~~~~dGs~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy 199 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVY 199 (302)
T ss_dssp EEEEEETTSCCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEE
T ss_pred eEEEEECCCCCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEE
Confidence 55555577776666765543 34444 4455654443 67788888766554443331 122 34569999998
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1101)
-.... ....|..-++..+... .+.. . .+ ..++|++++|+.+. ..+.|..-++........... .+
T Consensus 200 ~t~~~--~~~~I~~~~ldG~~~~-~Lt~--~-~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-----~~ 266 (302)
T 3s25_A 200 YMDVN--RDNAIVHVNINNPNPV-VLTE--A-NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-----EF 266 (302)
T ss_dssp EEEGG--GTTEEEEECSSSCCCE-ECSC--S-CE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----CE
T ss_pred EEEcC--CCcEEEEEECCCCCeE-EEeC--C-Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----cc
Confidence 76542 1246777777655432 2321 1 22 34888898888763 345677777754333222221 12
Q ss_pred CeeEEecCCCEEEEEE
Q 001319 633 PRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~ 648 (1101)
..+++.+.+|+-..
T Consensus 267 --~~i~i~~d~Iy~td 280 (302)
T 3s25_A 267 --CNINVTSQYVYFTD 280 (302)
T ss_dssp --EEEEECSSEEEEEE
T ss_pred --ceEEEeCCEEEEEE
Confidence 24455666666654
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.42 E-value=0.52 Score=50.04 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=97.2
Q ss_pred ecCCCCeEEEEc-C----C-------eEEEEECCCceEEEEeeCCCCC-eeEEEEecCCCCEEEEEeCC-------CcEE
Q 001319 812 LSKNDSYVMSAT-G----G-------KISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTED-------STIH 871 (1101)
Q Consensus 812 ~s~dg~~la~~~-d----g-------~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~d-------g~v~ 871 (1101)
...++++++.|+ . + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 345677777765 1 1 1778888765543221111111 1222222 56778888754 2577
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEc
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 945 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 945 (1101)
+||..+.+-...-......-...+...+++.++.|+.+ ..+.+||..+.+-...... . .......++.
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--p---~~r~~~~~~~- 204 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM--K---TPRSMFGVAI- 204 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC--S---SCCBSCEEEE-
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC--C---CCcccceEEE-
Confidence 88887654322111111111111222467777777642 3589999988653322111 1 1111122222
Q ss_pred CCCCEEEEEe-C-----CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC--------------CcEE
Q 001319 946 ADQVRMLVVH-E-----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--------------GNIG 1005 (1101)
Q Consensus 946 ~d~~~l~~~~-d-----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d--------------g~i~ 1005 (1101)
-+++.++.|. + ..+.+||..+.+-...-..... ......+. .++++++.|+.+ ..+.
T Consensus 205 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~ 281 (318)
T 2woz_A 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIW 281 (318)
T ss_dssp ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEE
T ss_pred ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEE
Confidence 3556666643 1 4578899887654332211111 11112222 367777777654 4588
Q ss_pred EEeCCCCceeEe
Q 001319 1006 VFDADTLRLRCY 1017 (1101)
Q Consensus 1006 vwd~~~~~~~~~ 1017 (1101)
+||+.+.+-...
T Consensus 282 ~yd~~~~~W~~~ 293 (318)
T 2woz_A 282 KYEDDKKEWAGM 293 (318)
T ss_dssp EEETTTTEEEEE
T ss_pred EEeCCCCEehhh
Confidence 899988765544
No 342
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.39 E-value=3.4 Score=43.77 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=64.4
Q ss_pred CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE--Eec---ccCCcceEEEEEeCC---CCEEEEE---eCC
Q 001319 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR--TYA---GFRKKSNGVVQFDTT---QNHFLAV---GED 606 (1101)
Q Consensus 538 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~~~---~~~~~~v~~~~~~~~---~~~l~~~---~~d 606 (1101)
-.....|+|.|||+.+++-- ..+.|++++..+++... .+. .........++++|+ +..|++. ..+
T Consensus 31 L~~P~~ia~~pdG~llVter----~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSR----DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CSSEEEEEECTTSCEEEEET----TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCceEEEEcCCCcEEEEEe----cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 34578999999999877753 26789999876655422 221 111234667999995 4555543 245
Q ss_pred CcEEEEECCCC----------eee-EeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 607 SQIKFWDMDNV----------NIL-TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 607 g~i~iwd~~~~----------~~~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
+.|.-|....+ +.+ ..+.. ........++|.|||.+.++.+..+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTT
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCC
Confidence 56777766541 111 12221 1112346799999997766655433
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.13 E-value=0.075 Score=51.32 Aligned_cols=145 Identities=12% Similarity=0.018 Sum_probs=81.2
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceE------EEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
.+..++|+|+|.+.++ .+|.++-.+..+... -..+-. --..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 888877766644211 111110 001137889999 8888777 5698887765331
Q ss_pred eEE------Eee-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce--EEeecCCCCCCCcceEEEcCCCC
Q 001319 879 EVK------SKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV--TIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 879 ~~~------~~~-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
..- ..+ .+-=..+..|.|.|+|.+.+.. |+.+.-+.--++...... ....-.+.. ..-+.+.|.+++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-DTFKFLFFSSVGT 194 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-GGEEEEEECTTSC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-ceEEEEEECCCCc
Confidence 110 011 1111467999999999887766 776543322221111000 000000000 2334566888888
Q ss_pred EEEEEeCCe
Q 001319 950 RMLVVHETQ 958 (1101)
Q Consensus 950 ~l~~~~d~~ 958 (1101)
+.++. ++.
T Consensus 195 l~~v~-~g~ 202 (236)
T 1tl2_A 195 LFGVQ-GGK 202 (236)
T ss_dssp EEEEE-TTE
T ss_pred EEEEe-CCe
Confidence 87777 553
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.90 E-value=6.1 Score=43.98 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCceEEEEEecc-CcEEEEecCCCceeccccceeecccccCcccccccc--ccCCccEEEEEEccC---
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSN-GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF--KDVPISVSRVAWSPD--- 417 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d-~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~h~~~v~~~~~spd--- 417 (1101)
-...++|+|.|||+ |+++- .. +.|++++..++..... . ++ .. .+ .........|+|+||
T Consensus 26 l~~P~~~a~~pdG~-l~V~e-~~gg~I~~~~~~~g~~~~~---~--~~-------~~-~~~~~~g~~Gllgia~~Pdf~~ 90 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTE-RATGKILRVNPESGSVKTV---F--QV-------PE-IVNDADGQNGLLGFAFHPDFKN 90 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEE-TTTCEEEEECTTTCCEEEE---E--EC-------TT-CCCCTTSSCSEEEEEECTTTTT
T ss_pred CCCceEEEEcCCCc-EEEEE-cCCCEEEEEECCCCcEeEE---e--cC-------Cc-cccccCCCCceeEEEECCCcCc
Confidence 34788999999998 65554 45 4688887655543210 0 00 00 11 113567889999996
Q ss_pred CCEEEEEEC-------------CCeEEEEeecCCc-cc---ccce-eee-cccCcEEEEEEecCCCceEEEEe
Q 001319 418 GNYVGVAFT-------------KHLIQLYSYAGSN-DL---RQHS-QID-AHVGAVNDLAFAYPNKLLCVVTC 471 (1101)
Q Consensus 418 g~~las~~~-------------d~~i~vwd~~~~~-~~---~~~~-~l~-~h~~~V~~l~~s~d~~~~~l~s~ 471 (1101)
+.+|.++.. ...|.-|+...+. .+ +.+. .+. ........|+|.|||. +++.+|
T Consensus 91 ~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 555554432 2356666665331 01 1111 111 1122478999999997 244444
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.78 E-value=0.16 Score=49.07 Aligned_cols=147 Identities=13% Similarity=0.083 Sum_probs=83.1
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE------Eee-c-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK------SKL-K-GHQKRITGLAFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~------~~~-~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
.++.++|+| ++.+.++ .+|.++-.+..++... ..+ . +-.. -.++.|.|+|.+.++ .||.|.-++--
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8987777 6777666555432110 111 0 1111 478999999988877 56988877653
Q ss_pred CCccccceE--EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceee-----eEeccCCCCCCCEEEEEEccC
Q 001319 919 TWEKRKSVT--IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-----RQWTPQDALSAPISCAVYSCN 991 (1101)
Q Consensus 919 ~~~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----~~~~~~~~h~~~v~~v~~s~d 991 (1101)
+.......- ..+-.+.- ..+..+.|.|+|.+.++. |+.++-....+.... ...... .....-+-+.|+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~-~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQ-GGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEES-SSGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCCC-CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceecc-CCcceEEEEEECCC
Confidence 322111100 00000000 356889999999999988 888644333322100 011010 11334555778999
Q ss_pred CCEEEEEeCCCcE
Q 001319 992 SQLVFATFCDGNI 1004 (1101)
Q Consensus 992 g~~l~s~~~dg~i 1004 (1101)
|.+.++. +|.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8876665 6633
No 346
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=94.71 E-value=0.083 Score=48.54 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=61.1
Q ss_pred hHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHH
Q 001319 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1101)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1101)
.++|+|+-|.||||+..|..++|..|+++.-.-+.....+.+++|..+....+..+++....+.. .+.+-..|
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL 130 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 130 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHH
Confidence 39999999999999999999999999987655555566788999998887777766666655554 34445667
Q ss_pred HHHHHh
Q 001319 144 LIELKK 149 (1101)
Q Consensus 144 ~~~l~~ 149 (1101)
+.-|++
T Consensus 131 ~~fL~~ 136 (156)
T 2nxp_A 131 KRHLQE 136 (156)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 766666
No 347
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.54 E-value=1.6 Score=47.07 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=54.1
Q ss_pred CccEEEEeccC------CeEEEEecCCCCeeeeccC----CCCceEEEEEccCCCEEEEeecCCCCC-------------
Q 001319 507 NIQFIFSTAID------GKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGD------------- 563 (1101)
Q Consensus 507 ~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~------------- 563 (1101)
++.+++.|+.+ ..+.+||++.....+.... ........+...+++.++.|+.+.++.
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 44667777643 3466677633333332211 111111122334667777776422110
Q ss_pred -----ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC------cEEEEECCCCeeeEeeccC
Q 001319 564 -----SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS------QIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 564 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~ 626 (1101)
..+.+||+.+.+-...-..... .....++..+++.++.||.++ .|.++++++++.+.....+
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred cccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 3578899887654433221111 111122334567777787542 4666788887776665443
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.38 E-value=7.9 Score=43.01 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=35.7
Q ss_pred cEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceee-----e----cccCcEEEEEEecC
Q 001319 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQI-----D----AHVGAVNDLAFAYP 462 (1101)
Q Consensus 408 ~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l-----~----~h~~~V~~l~~s~d 462 (1101)
.-..|+|.|||. .|+++...|.|++++.........+..+ . +..+....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 567899999996 5666778999999975432111111111 1 12456889999997
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.12 Score=54.71 Aligned_cols=190 Identities=10% Similarity=0.063 Sum_probs=103.3
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecC-CcCeEEEeccc-CCCccEEEEe-ccCCeEEEEecCCCCeeeeccCC----C
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHH-KENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAP----G 538 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h-~~~v~~v~~~~-~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~----~ 538 (1101)
+++.++.||.|.-.| .+|+.+.++... ..++....-.. ..++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 578888999999999 899998888654 12333221111 1133344443 68999999998776544432211 1
Q ss_pred CceEE---EEE-----ccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc------eEEEEEe-----CCCCE
Q 001319 539 HWCTT---MLY-----SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFD-----TTQNH 599 (1101)
Q Consensus 539 ~~v~~---~~~-----s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~~-----~~~~~ 599 (1101)
.++.. ..+ +..+..+++++. ++.+...|..+|+.+..+....... ..+.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 013456667765 8899999999999999987542111 0011110 12356
Q ss_pred EEEEeCCCcEEEEECCCCeeeEeeccCCC-CCCCC-----eeEEecCCCEEEEEEcCCcEEEEEcccccc
Q 001319 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLP-----RLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~-----~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
++.+..+..+.+.+ ++|+ +..+..... ...+. .-..+.|+.. ++++.||.|..+|..++..
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 77777777777766 3443 222110000 00000 0111234665 5578899999998887743
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.35 E-value=2.1 Score=47.47 Aligned_cols=192 Identities=9% Similarity=0.141 Sum_probs=114.4
Q ss_pred CCCeEEEEc--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEe--cCCCCEEEEEeC-------CCcE---------EEE
Q 001319 815 NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGTE-------DSTI---------HIY 873 (1101)
Q Consensus 815 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--~~~~~~la~g~~-------dg~v---------~iw 873 (1101)
||++|...+ +.+|...+++..++...+..+ ...+..++|- | +..+++.+++ ||.. .+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 788998887 577999999999887766653 3468888886 5 6677777763 3332 111
Q ss_pred Ee---ecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC---------------cEEEEECCC-------Cc--ccc--
Q 001319 874 NV---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA---------------QLCVWSIDT-------WE--KRK-- 924 (1101)
Q Consensus 874 d~---~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~v~lwd~~~-------~~--~~~-- 924 (1101)
.. .+.+....+.- .+..-.+...++|++.++.+.+. .+.++++.. |+ ...
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 11 11111111110 12333455567777777765431 244554321 11 000
Q ss_pred -ceEEeecC----C-------CCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCcee-------------eeEeccCC
Q 001319 925 -SVTIHIPA----G-------KTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER-------------IRQWTPQD 977 (1101)
Q Consensus 925 -~~~~~~~~----~-------~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~-------------~~~~~~~~ 977 (1101)
...+.... + ..+.....+.++|||++++++. +.++.|+|.++... +.....
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-- 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-- 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--
Confidence 00010000 0 0014556789999999999976 78999999885321 222222
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
.......+|.++|.-..|-.-|..|.-|++...
T Consensus 377 --GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 --GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp --CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred --CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 566788999999954556678999999999864
No 351
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=94.07 E-value=0.041 Score=49.21 Aligned_cols=77 Identities=12% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+|+-|.||||+..|..++|..|+.+.-.-+... .+.+++|..+....+..+++....+.. .+.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 999999999999999999999999998766555555 788888888777766655555443332 344556677
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
.-|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 352
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=94.05 E-value=0.03 Score=50.59 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=54.4
Q ss_pred cchhhHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHH
Q 001319 67 RYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTA 139 (1101)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1101)
++.. ++|+|+.|.||||+..| .++|..|+.+.-.-+.....+.+++|..+....+..+++....+.. .+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 3344 99999999999999999 9999999986554443445566777776666555554444443333 3444
Q ss_pred HHHHHHHHHh
Q 001319 140 RGIMLIELKK 149 (1101)
Q Consensus 140 r~~l~~~l~~ 149 (1101)
-..|+..|++
T Consensus 109 ~~lL~~fL~~ 118 (148)
T 2j49_A 109 LNLLLYFLNE 118 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666655
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.53 E-value=21 Score=42.16 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=122.8
Q ss_pred EEEEE-EecCCceEEEEEecc----CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 347 VISMD-FHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 347 V~~v~-fspdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
...+. ++|||++++++-|.. ..|+++|+.+++.+.. .|. ...+.. ++ -......++|..++..+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~------~~---~~~~~~~~~W~d~~~~~ 199 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSG------KL---LEGKFTYPTWINKDTII 199 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTC------CB---CCEETCCEEEEETTEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cccccc------cc---cccccceeeEECCCEEE
Confidence 33444 899999776654433 3899999999887642 111 000000 00 00112344776333333
Q ss_pred EEE----------ECCCeEEEEeecCCcccccceeeecccCcE-EEEEEecCCCce---EEEEecCC---ceEEEEEcC-
Q 001319 422 GVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKLL---CVVTCGDD---KLIKVWELS- 483 (1101)
Q Consensus 422 as~----------~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V-~~l~~s~d~~~~---~l~s~~~d---~~v~iwd~~- 483 (1101)
++. +....|+.|.+-+...-.. ..+.+....+ .....+++++.. .+++.+.+ ..+.+.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 321 1124688887766432111 1233333333 345556677641 35544322 345566633
Q ss_pred --CceeEEeecCCcCeEEEecccCCCccEEEEec----------cCCeEEEEecCCCC-------eeee-c-cCCCCceE
Q 001319 484 --GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDTMG-------SRVD-Y-DAPGHWCT 542 (1101)
Q Consensus 484 --~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~-------~~~~-~-~~~~~~v~ 542 (1101)
++ +..+....... +..+. ++.+++... ..+.|...++.+.. .... + ......+.
T Consensus 279 ~~~~-~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLK-LQKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCE-EEECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCc-ceEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 43 23332222211 11111 334444321 35678888887642 1111 2 22334677
Q ss_pred EEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEE-ecccCCcceEEEEEeCCCCEEEE-Ee---CCCcEEEEECC
Q 001319 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHFLA-VG---EDSQIKFWDMD 615 (1101)
Q Consensus 543 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~ 615 (1101)
.+.+..+ ..+++... ++...|.++|+.++. .... +.......+......++++.++. .+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 8888876 34444432 345678889887775 2333 32222224555666677655444 33 44678888876
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.17 E-value=4.3 Score=41.78 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=113.5
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.|..++.... ..++.. +|+++.|-....-.+.........|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 4566665433 233333 78888886543211111111123577777653 334444 5 9999999866432211111
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
.-...|..++...+. .+.-. ||.|..|-.....++... .. ....+..++...+... +.. |+.|..|-..
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~---~~---~~~~i~~i~~G~~~~~-~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVP---AE---AQSGVTALDGGVYTAL-AVK-NGGVIAWGDN 167 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCC---GG---GGSSEEEEEECSSEEE-EEE-TTEEEEEECC
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCC---cc---CCCCeEEEEcccCEEE-EEE-CCEEEEecCC
Confidence 113468888776543 33334 999999987654332210 00 0134555544433322 223 7889888766
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
....+..-... ...|..++...+.. ++. .||.|+.|-....-.+.. +... .. .+..++-..
T Consensus 168 ~~gqlg~p~~~---~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-------p~~~---~~--~v~~i~~G~- 228 (282)
T 3qhy_B 168 YFGQTTVPAEA---QSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-------PTEA---LS--GVSAIASGE- 228 (282)
T ss_dssp TTSTTSCCGGG---GSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-------CGGG---GS--SCCEEEECS-
T ss_pred CCCCCCCceec---CCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-------Cccc---CC--CceEEEcCC-
Confidence 43332211111 45688887654333 333 599999997655322211 1010 11 123444322
Q ss_pred CCCEEEEEECCCeEEEEeCCCC
Q 001319 1046 EPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1046 d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
...++.. ||.|..|-....
T Consensus 229 -~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 -WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp -SCEEEEE--TTEEEEESTTCC
T ss_pred -CEEEEEE--CCEEEEecCCCC
Confidence 3344444 999999986543
No 355
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.92 E-value=7.1 Score=46.33 Aligned_cols=200 Identities=6% Similarity=-0.027 Sum_probs=100.4
Q ss_pred cCCCEEEEEECC----CeEEEEeecCCcccccceeee---cccCc-EEEEEEec-CCCceEEEEecCCc------eEEEE
Q 001319 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQID---AHVGA-VNDLAFAY-PNKLLCVVTCGDDK------LIKVW 480 (1101)
Q Consensus 416 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~---~h~~~-V~~l~~s~-d~~~~~l~s~~~d~------~v~iw 480 (1101)
-++..++.|+.+ ..+.+||..+++-......+. ..... -.+++..+ +++ +++.||.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ--LLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE--EEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE--EEEEcCCCCCCCccccEEEE
Confidence 567777777753 458899988764222100000 01111 12233333 565 666666432 57788
Q ss_pred E-cCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCC--eEEEEecCCCCeeeec-----cCCCCceEEEEEccC-
Q 001319 481 E-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDY-----DAPGHWCTTMLYSAD- 549 (1101)
Q Consensus 481 d-~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~d- 549 (1101)
| .+..-. ..+......-.++.+. ++.+++.|+.++ .+.+||..+..=...- ........++.+..+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~---~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLP---DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECT---TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred eCCCCcEEECCCCCCCcccceEEEEc---CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 8 443221 1111111112222221 456778887655 6888887664322111 111122234555555
Q ss_pred CCEEEEeecCCCC---CceEEEEeCCCCe------eEEEecc-cCCcceEEEEEeCCCCEEEEEeC--------CCcEEE
Q 001319 550 GSRLFSCGTSKDG---DSFLVEWNESEGT------IKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE--------DSQIKF 611 (1101)
Q Consensus 550 ~~~l~~~~~~~~~---~~~i~iwd~~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i 611 (1101)
++.++.|+...++ ...+.+||+.+.. ....... .....-..++...++..++.||. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 6677777653322 3568899998876 2222111 11111222333333666677763 346999
Q ss_pred EECCCCeee
Q 001319 612 WDMDNVNIL 620 (1101)
Q Consensus 612 wd~~~~~~~ 620 (1101)
||..+.+..
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999887665
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.49 E-value=7.4 Score=40.00 Aligned_cols=183 Identities=11% Similarity=0.051 Sum_probs=96.4
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.|..++...+-. ++. .+|.|+.|-....-.+.....-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 456666544333 333 378888886543211111111123577777754 3444455 9999999876432221111
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
.....|..++...+. .++ -. ||.|..|-.....++.. .... ...+..++....... +. .++.|..|-..
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~---p~~~---~~~v~~i~~G~~hs~-al-~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTV---PAEA---QSGVDDVAGGIFHSL-AL-KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSC---CGGG---GSSEEEEEECSSEEE-EE-ETTEEEEEECC
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCC---ceec---CCCeEEEEecCCEEE-EE-ECCeEEEEECC
Confidence 233567777775443 233 33 79999998765433321 0000 134555555544443 34 78999999765
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
....+..-... ...|..|+...+.. ++.. ||.|+.|-...
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred CCCCCCCCccc---CCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 43322211111 34577777554333 3333 99999997654
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.33 E-value=35 Score=37.80 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=61.1
Q ss_pred CEeEEEecCCCC--eEEEEcCCeEEEEECCCce---EEEEeeC---------CCCCeeEEEEecC---CCCEEEEEeCC-
Q 001319 806 AVPCIALSKNDS--YVMSATGGKISLFNMMTFK---VMTTFMS---------PPPASTFLAFHPQ---DNNIIAIGTED- 867 (1101)
Q Consensus 806 ~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~---~~~~~~~---------~~~~i~~l~~s~~---~~~~la~g~~d- 867 (1101)
..+.|+|.|||. ++++-..|.|++++..... .+..+.. .......|+|+|+ ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 7777678999999754221 2222211 1345788999982 24444443321
Q ss_pred -----------CcEEEEEeec----------ceEEEeec--cCCCCeeEEEEcCCCCEEEEEeCCC
Q 001319 868 -----------STIHIYNVRV----------DEVKSKLK--GHQKRITGLAFSTSLNILVSSGADA 910 (1101)
Q Consensus 868 -----------g~v~iwd~~~----------~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg 910 (1101)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455432 12333322 1122367899999999888776543
No 358
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.16 E-value=32 Score=37.17 Aligned_cols=208 Identities=8% Similarity=-0.007 Sum_probs=102.8
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEeecc-e----------EEEeecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-E----------VKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVW 915 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-~----------~~~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lw 915 (1101)
+..++. +....+.-..||.|+.|-.... + ....+.. ....+..++++......+....||.|..|
T Consensus 55 i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444444 4456666778999999975431 1 1111221 22345556777666777777889999999
Q ss_pred ECCCCcccc-------ceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCce-----------eeeEeccCC
Q 001319 916 SIDTWEKRK-------SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME-----------RIRQWTPQD 977 (1101)
Q Consensus 916 d~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~-----------~~~~~~~~~ 977 (1101)
-.....++. ..+... ..-....+..++.. ....++...++.|..|-....- ....+....
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v-~~l~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVI-ESLRGIEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEEC-GGGTTSCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEe-cccCCCeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 765422110 111111 10000133333332 2233444668889999654311 111111111
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1057 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg 1057 (1101)
...|..++......+.+.-..||.|+.|-....-.+..-.......+..+..-....+..++.- ....+.-..||
T Consensus 210 --~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G---~~hs~alt~~G 284 (389)
T 3kci_A 210 --GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG---SQFSVALTKSG 284 (389)
T ss_dssp --TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE---TTEEEEEETTS
T ss_pred --CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC---CCEEEEEeCCC
Confidence 4567777765544566677789999999754321110000000000000000111123444432 34555567899
Q ss_pred eEEEEeCC
Q 001319 1058 SVKVMEPS 1065 (1101)
Q Consensus 1058 ~v~iWd~~ 1065 (1101)
.|..|-.-
T Consensus 285 ~v~~wG~n 292 (389)
T 3kci_A 285 AVYTWGKG 292 (389)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999753
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.39 E-value=22 Score=42.04 Aligned_cols=244 Identities=8% Similarity=0.010 Sum_probs=116.6
Q ss_pred EEEE-EccCCCEEEEEEC-----CCeEEEEeecCCcccccceeeeccc-----CcEEEEEEecCCCceEEEEe-------
Q 001319 410 SRVA-WSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHV-----GAVNDLAFAYPNKLLCVVTC------- 471 (1101)
Q Consensus 410 ~~~~-~spdg~~las~~~-----d~~i~vwd~~~~~~~~~~~~l~~h~-----~~V~~l~~s~d~~~~~l~s~------- 471 (1101)
..+. ++||+++++.+-+ -..|+++|+.+++.+.....-.... .....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~ 209 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEI 209 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCB
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCc
Confidence 3444 8899998887522 2369999999987654211100000 0123458874444 44432
Q ss_pred ---cCCceEEEEE-cCC--ceeEEeecCCcCe-EEEecccCCCcc---EEEEeccC---CeEEEEecCCCC-eeeeccCC
Q 001319 472 ---GDDKLIKVWE-LSG--RKLFNFEGHEAPV-YSICPHHKENIQ---FIFSTAID---GKIKAWLYDTMG-SRVDYDAP 537 (1101)
Q Consensus 472 ---~~d~~v~iwd-~~~--~~~~~~~~h~~~v-~~v~~~~~~~~~---~l~s~~~d---~~i~~wd~~~~~-~~~~~~~~ 537 (1101)
+....|+.|. -+. +-...+.+....+ .....+.++... .+++.+.+ ..+.+.+.+... ....+..+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 1224678887 222 1223344433333 223333333222 34443322 345555554322 22333333
Q ss_pred CCceEEEEEccCCCEEEEeecCC------CCCceEEEEeCCCCe-------eEE-EecccCCcceEEEEEeCCCCEEEEE
Q 001319 538 GHWCTTMLYSADGSRLFSCGTSK------DGDSFLVEWNESEGT-------IKR-TYAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 538 ~~~v~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~~~-------~~~-~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
... .+..+.++.+++....+. -..+.|...|+.++. ..+ .+.......+..+.+..+ ..+++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 321 223445665555432210 135678888877642 122 244434445667777765 455566
Q ss_pred eCCC--cEEEEECCCCe-eeEe-eccCCCCCCCCeeEEecCCCEEE-EEEc---CCcEEEEEcc
Q 001319 604 GEDS--QIKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGNLLA-VTTA---DNGFKILANA 659 (1101)
Q Consensus 604 ~~dg--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~g~~l~-~~~~---d~~i~iwd~~ 659 (1101)
..++ .++++++.+++ .... +.... ...+.....++++..++ +.+. -+.+..+|..
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6665 46777776664 2233 33322 12344455556655443 3332 2456566554
No 360
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.80 E-value=42 Score=36.17 Aligned_cols=210 Identities=9% Similarity=0.056 Sum_probs=105.9
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-----------eEEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-----------EVKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCV 914 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-----------~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~l 914 (1101)
.+..++++. +....+.-..||.|+.|-.... .....+..- ...|..++.. ....+....||.|..
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677777 6677777788999999965431 111122211 2256666664 345556678999999
Q ss_pred EECCCCccc------cceEEeecCCCCCCCcceEEEcC-CCCEEEEEeCCeEEEEEcCCcee-----------eeEeccC
Q 001319 915 WSIDTWEKR------KSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMER-----------IRQWTPQ 976 (1101)
Q Consensus 915 wd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~d~~i~v~d~~~~~~-----------~~~~~~~ 976 (1101)
|-....-++ ...............+..++... +...++...++.|..|-...... ...+...
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 976542211 11111111111113455555544 34455557789999996543211 1111111
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 977 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
. ...|..|+.. ..+.+.-..||.|+.|-....-.+..-.......+..+..-....++.++- .....+....|
T Consensus 263 ~--~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~~ 335 (389)
T 3kci_A 263 T--GLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTED 335 (389)
T ss_dssp T--TSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETT
T ss_pred C--CCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECCC
Confidence 1 3346666654 345555578999999976432111000000000000000011112334443 34455666889
Q ss_pred CeEEEEeCCC
Q 001319 1057 GSVKVMEPSE 1066 (1101)
Q Consensus 1057 g~v~iWd~~~ 1066 (1101)
|.|..|-...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999998654
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=85.28 E-value=43 Score=35.74 Aligned_cols=196 Identities=11% Similarity=0.148 Sum_probs=102.7
Q ss_pred CcEEEEEEecCCceEEE-EEec-------------cCcEEEEecCCC--ceeccccceeecccccCccccccccccCCcc
Q 001319 345 STVISMDFHPSHQTLLL-VGSS-------------NGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1101)
Q Consensus 345 ~~V~~v~fspdg~~lla-sg~~-------------d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 408 (1101)
-.|..+...++|+..++ +|-. --.|.+||+.++ +.++...+ +..... ....
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~------------p~~~~~-~~S~ 153 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYF------------PTRLVE-KPTY 153 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEEC------------CGGGCC-CGGG
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEEC------------CHHhcc-cCCc
Confidence 36777888887763322 2211 125889999998 77764222 212222 2457
Q ss_pred EEEEEEc---cC----CCEEEEEE-CCCeEEEEeecCCcccccce-----------eeecc----cCcEEEEEEecC---
Q 001319 409 VSRVAWS---PD----GNYVGVAF-TKHLIQLYSYAGSNDLRQHS-----------QIDAH----VGAVNDLAFAYP--- 462 (1101)
Q Consensus 409 v~~~~~s---pd----g~~las~~-~d~~i~vwd~~~~~~~~~~~-----------~l~~h----~~~V~~l~~s~d--- 462 (1101)
+..+++. |+ +.++..+. ..+-|.|+|+.+++..+... ...|. ...|..|+.+|+
T Consensus 154 l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~ 233 (381)
T 3q6k_A 154 FGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSE 233 (381)
T ss_dssp EEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTT
T ss_pred cceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCC
Confidence 8888887 32 33444443 35679999999987654321 00111 236788888887
Q ss_pred -CCceEEEEecCCceEEEEE---c-CC---ceeEEeecCCc---CeEEEecccCCCccEEEEeccCCeEEEEecCC-C--
Q 001319 463 -NKLLCVVTCGDDKLIKVWE---L-SG---RKLFNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-M-- 528 (1101)
Q Consensus 463 -~~~~~l~s~~~d~~v~iwd---~-~~---~~~~~~~~h~~---~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~-- 528 (1101)
++.+++-..+.. .+.--. . +. ..+..+ |..+ .-..+++. +.+|.++++--....|..|+... .
T Consensus 234 ~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D-~~~G~ly~~~~~~~aI~~w~~~~~~~~ 310 (381)
T 3q6k_A 234 GNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYD-PKTKVIFFAEANTKQVSCWNTQKMPLR 310 (381)
T ss_dssp SCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEEC-TTTCEEEEEESSSSEEEEEETTSCSBC
T ss_pred CCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEe-CCCCeEEEEeccCCeEEEEeCCCCccc
Confidence 564333333322 222111 1 11 111111 2222 22233332 13567777777888999998765 1
Q ss_pred --C-eeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 529 --G-SRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 529 --~-~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
. ........-..+..+.+..+|.+.+..
T Consensus 311 ~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 311 MKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp GGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred cCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 1 111222223356777777666544443
No 362
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=83.67 E-value=18 Score=42.77 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=63.2
Q ss_pred CCCEEEEeecCCCC--CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC--cEEEEECCCCeeeEeec
Q 001319 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 549 d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 624 (1101)
+++.++.||..... -..+.+||..+.+....-.......-.+++...++..++.||.++ .+.+||..+......-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 77777787764322 246889999886544432222111222233324777888887544 79999998876544322
Q ss_pred ---cCCCCCCCCeeEEecC-CCEEEEEEc--C-----CcEEEEEcccc
Q 001319 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (1101)
Q Consensus 625 ---~~~~~~~v~~v~~s~~-g~~l~~~~~--d-----~~i~iwd~~~~ 661 (1101)
.........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111111233555555 666677665 2 34777777655
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.11 E-value=62 Score=34.50 Aligned_cols=155 Identities=9% Similarity=0.134 Sum_probs=87.1
Q ss_pred eEEEEECCCc--eEEEEeeCC------CCCeeEEEEe---cC--C-CCEEEEEe-CCCcEEEEEeecceEEEeeccCCCC
Q 001319 826 KISLFNMMTF--KVMTTFMSP------PPASTFLAFH---PQ--D-NNIIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKR 890 (1101)
Q Consensus 826 ~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~--~-~~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~ 890 (1101)
+|.+||+.+. +.++++.-. ...+..+++. +. + +.++..+. ..+.|.|+|+.+++.-+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5778888888 777776532 2346777777 21 1 33444443 4678999999999877665311
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC----CCEEEEEeCCeEEEEEcCC
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQLAIYDASK 966 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~d~~i~v~d~~~ 966 (1101)
|.|+.....+ .+|.-.-|. ..+..++++|+ ++.|....=..-++|.+.+
T Consensus 201 -----~~pd~~~~~~--i~G~~~~~~--------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEYEFK--------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEEEEC--------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceE--ECCEEeEec--------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 3444111111 122211110 46778888887 6777765433334443321
Q ss_pred --------ceeeeEeccCCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCC
Q 001319 967 --------MERIRQWTPQDALSAPISCAVYS-CNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 967 --------~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
...+..+-. .+-...-..+++. .+|.+.++--+...|..|+..+
T Consensus 254 ~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 254 KELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred HHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 111111111 1102344566775 6787777777888999999876
No 364
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.26 E-value=68 Score=34.50 Aligned_cols=216 Identities=7% Similarity=0.015 Sum_probs=100.2
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCC--cEEEEEee-cce---EEEe---ecc--------CCCCeeEEEEcCC--CCEEEE
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVR-VDE---VKSK---LKG--------HQKRITGLAFSTS--LNILVS 905 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~-~~~---~~~~---~~~--------h~~~V~~l~~s~d--~~~l~s 905 (1101)
...|.+|++.|.+...|.++...| .-.||... .++ .+.. +.. +...|.++++.|. ...|..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 456999999984444455555554 11233332 222 2211 111 1125788999862 445555
Q ss_pred EeCCCcEEEEECCCCccccceEEeec---C------------CCCCCCcceEEEcCC--CCEEEEEeCCeEEEEEcCCce
Q 001319 906 SGADAQLCVWSIDTWEKRKSVTIHIP---A------------GKTPTGDTRVQFNAD--QVRMLVVHETQLAIYDASKME 968 (1101)
Q Consensus 906 ~s~Dg~v~lwd~~~~~~~~~~~~~~~---~------------~~~~~~v~~~~~s~d--~~~l~~~~d~~i~v~d~~~~~ 968 (1101)
++..+.|...+-....- ..+... . ......+..+.++|. +...+...++.|...+ +.++
T Consensus 134 g~~~ggl~~S~DgG~tW---~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~ 209 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASW---EPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT 209 (394)
T ss_dssp EEETTEEEEESSTTSBC---EECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred EecCCcEEEEcCCCCCe---EECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence 55555454443221111 111100 0 011135678889873 3444444455544332 2333
Q ss_pred eeeEeccC-CC-C--------CCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccce
Q 001319 969 RIRQWTPQ-DA-L--------SAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYP 1037 (1101)
Q Consensus 969 ~~~~~~~~-~~-h--------~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 1037 (1101)
.-..+... .. + ...+.++++.|+ ...|..+...+ |...+ +.++....+.. ..+ .......
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~--~l~-----~~~~~~~ 280 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD--AMP-----REVGDIG 280 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG--GSC-----TTTCSCE
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC--CCC-----CCCccce
Confidence 32222210 00 0 135899999986 35666666444 44443 22333322221 010 1101233
Q ss_pred EEEEEecCCCCEEEEEEC-----------CCeEEEEeCCCCCCcccc
Q 001319 1038 LVVAAHPLEPNQFAIGLT-----------DGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1038 ~~l~~~p~d~~~l~s~~~-----------Dg~v~iWd~~~~~~~~~~ 1073 (1101)
..++++|.++..+..+.. ++...+|....+..+|..
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~ 327 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQR 327 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEE
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceE
Confidence 467787755555555532 344567776666677765
No 365
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.92 E-value=75 Score=34.18 Aligned_cols=236 Identities=7% Similarity=-0.016 Sum_probs=107.8
Q ss_pred CccEEEEEEcc--CCCEEEEEECCC----eEEEEeecCCccccccee---eec--------ccCcEEEEEEecC--CCce
Q 001319 406 PISVSRVAWSP--DGNYVGVAFTKH----LIQLYSYAGSNDLRQHSQ---IDA--------HVGAVNDLAFAYP--NKLL 466 (1101)
Q Consensus 406 ~~~v~~~~~sp--dg~~las~~~d~----~i~vwd~~~~~~~~~~~~---l~~--------h~~~V~~l~~s~d--~~~~ 466 (1101)
...|.+|++.| ++...| +...| .|... .+.|+....... +.. ....|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 35799999999 455544 44443 33322 233433222111 111 1235888999873 34
Q ss_pred EEEEecCCceEEEEEcCCceeEEeec-------------------CCcCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 467 CVVTCGDDKLIKVWELSGRKLFNFEG-------------------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd~~~~~~~~~~~-------------------h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
.+..+...+.|...+..|+.-..+.. ....+.+|.+.+...+ .|+.+..++.|... ..
T Consensus 130 ~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 130 TWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp CEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 34444445555555444433222211 1234778888764333 34444444444332 33
Q ss_pred CCeeeeccC---C-----------CCceEEEEEccC-CCEEEEeecCCCCCceEEEEeCCCCeeEEEecc-cCC---cce
Q 001319 528 MGSRVDYDA---P-----------GHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRK---KSN 588 (1101)
Q Consensus 528 ~~~~~~~~~---~-----------~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~---~~v 588 (1101)
....+.... . ...+.++++.|+ ...+..+. .+.|...+- .++.-..+.. ... ..+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-----~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-----HCGIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-----TTEEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-----CCeEEEeCC-CCCcceECCCCCCCCCccce
Confidence 222221111 0 134889999886 35555554 233544432 2222222221 111 134
Q ss_pred EEEEEeC-CCCEEEEEeC-----------CCcEEEEECCC-CeeeEeecc--CC--CCC--CCCeeEEecC-CCEEEEEE
Q 001319 589 GVVQFDT-TQNHFLAVGE-----------DSQIKFWDMDN-VNILTSTDA--EG--GLP--NLPRLRFSKE-GNLLAVTT 648 (1101)
Q Consensus 589 ~~~~~~~-~~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~--~~~--~v~~v~~s~~-g~~l~~~~ 648 (1101)
..++++| +...++++.. ++...+|.... ++....+.. .. ... ....++++|. ...|++++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 5677776 3345555532 33345555444 333333321 11 000 1135788874 34566666
Q ss_pred cCCcEE
Q 001319 649 ADNGFK 654 (1101)
Q Consensus 649 ~d~~i~ 654 (1101)
.++.|.
T Consensus 361 ~~g~l~ 366 (394)
T 3b7f_A 361 TGGEIW 366 (394)
T ss_dssp TTSCEE
T ss_pred CCCeEE
Confidence 555544
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.08 E-value=66 Score=32.56 Aligned_cols=206 Identities=8% Similarity=0.044 Sum_probs=108.5
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEE---EEeecceEEEeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCcc
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHI---YNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEK 922 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~i---wd~~~~~~~~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~ 922 (1101)
.+..+.... ....|+.-+.+|.++- |++..+.....+. ....|.++.... +...++..+.+|.|+-..+.....
T Consensus 25 ~~~~~~~~~-t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVP-FTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEE-TTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEEC-CCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 344433333 3344555566776654 3333222111132 345566664421 467899999999999998766431
Q ss_pred cc--ceEEeecCCCCCCCcceEEEcCCC-CEEEEEeCCeEEEEEcCCcee-------eeEeccCCCCCCCEEEEEEccCC
Q 001319 923 RK--SVTIHIPAGKTPTGDTRVQFNADQ-VRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSCNS 992 (1101)
Q Consensus 923 ~~--~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~v~~s~dg 992 (1101)
.. ...+....+ ..+..+...... ..++.+..|.+..+....-.. +..+.... ...|..+...+++
T Consensus 103 ~~~G~~~i~lkeg---D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~--~d~vv~~~~~~~~ 177 (276)
T 3no0_A 103 KAQGMPIIKLTEG---DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK--NDETSGLRIWNGE 177 (276)
T ss_dssp CSTTEECSCCCTT---CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEESSC
T ss_pred hcCCeEEEecCCC---CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC--CCEEEEEEEeCCC
Confidence 11 111122222 344444444343 445557788888776532111 11122211 4567777666677
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEE--EeCCC
Q 001319 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV--MEPSE 1066 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~i--Wd~~~ 1066 (1101)
.+++..+..|.++...+.......+-. .. ++.......++.+.... ++..++..+.+|.+.. ++..+
T Consensus 178 ~~ll~~T~~G~~kr~~~~e~~~~~R~g-kG-----v~~i~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 178 PYLLVITAKGRVKKISHEEIPKTNRGV-KG-----TEVSGTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SEEEEEETTSCEEEEEGGGSCCCCTTC-CC-----EECCCSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEeEHHHcccCCCCC-cc-----eEEEcCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 789999999999998876544322210 00 00001122233333333 3556777788888887 87643
No 367
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.54 E-value=1.3e+02 Score=36.98 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=36.1
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCC
Q 001319 980 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
...+.+++..++..++++-+.|+++|||++.++.++......
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 446778888889999999999999999999999998887543
No 368
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=74.25 E-value=1.2e+02 Score=34.12 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=31.6
Q ss_pred CCeeEEEecccCCcceEEEEEeCC--CCEEEEEeCC----CcEEEEECCCCeeeEeeccC
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGED----SQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~ 626 (1101)
.|+.+......++.......|.|+ |-.++.+.++ .-..+.|..+|+.+......
T Consensus 355 dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 355 DGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp TSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEecCc
Confidence 344443333333335666667776 3455555554 25677899899988877543
No 369
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=74.07 E-value=1.2e+02 Score=33.98 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=88.2
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCce----------------------------EEEEE-cCCceeEEeecC--CcCe-
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKL----------------------------IKVWE-LSGRKLFNFEGH--EAPV- 497 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~----------------------------v~iwd-~~~~~~~~~~~h--~~~v- 497 (1101)
|-..+....|.-||+. -++....+++ +.|+| .+|+.+.++... .+.+
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5566777788888876 4555555554 78999 899988776432 2212
Q ss_pred --------------EEEecccCCCccEEEEec---cCCeEEEEecCCCCe--eeeccCC-----------CCceEEEEEc
Q 001319 498 --------------YSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS--RVDYDAP-----------GHWCTTMLYS 547 (1101)
Q Consensus 498 --------------~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~~-----------~~~v~~~~~s 547 (1101)
.+++.. +++...++.+- .-..|..||++..+. .+.+... .+...-..+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 233332 11222333322 122477788766644 2222221 1334444455
Q ss_pred cCCCE-EEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC--CEEEEEeCCC----cEEEEECCCCeee
Q 001319 548 ADGSR-LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDS----QIKFWDMDNVNIL 620 (1101)
Q Consensus 548 ~d~~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~~ 620 (1101)
-||+- |+.++.- +| ..|+.+......+...+....|.|+. -.++.+.+++ -..+.|..+|+.+
T Consensus 335 gDG~dEIv~Gs~~---------iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 335 GDGKDEIIFGSMA---------VD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSSSCEEEETTEE---------EC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCCCceEEEeeeE---------EC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 56653 3333221 22 23333333332333366777788873 4666666542 3556888999988
Q ss_pred EeeccC
Q 001319 621 TSTDAE 626 (1101)
Q Consensus 621 ~~~~~~ 626 (1101)
......
T Consensus 405 w~~~~~ 410 (591)
T 2zux_A 405 WGVYAG 410 (591)
T ss_dssp EEECCS
T ss_pred EEcCCC
Confidence 877543
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=71.35 E-value=98 Score=31.89 Aligned_cols=191 Identities=12% Similarity=0.098 Sum_probs=91.3
Q ss_pred cCCCEEEEEECCCeEEEEeecCCccccc------ceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE----c---
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ------HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE----L--- 482 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~------~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd----~--- 482 (1101)
|+..++++.+.+|.|+--.+.+-+..+. ...+..+ +.+..+....... .++..+..|.+.-.. .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 4566788899999998766654221110 0011122 2333333333333 234444455544433 1
Q ss_pred ---CCceeE---EeecCCcCeEEEeccc-CCCccEEEEeccCCeEEEEecCCCC-----eee--eccCCCCceEEEEEcc
Q 001319 483 ---SGRKLF---NFEGHEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMG-----SRV--DYDAPGHWCTTMLYSA 548 (1101)
Q Consensus 483 ---~~~~~~---~~~~h~~~v~~v~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~--~~~~~~~~v~~~~~s~ 548 (1101)
.|..+. .+. ....|.++.... -.+..+++..+..|.++.-.+.... ... .+... +.+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 111111 122 233455554321 1234578889999999988764221 111 22222 4454544444
Q ss_pred CCCEEEEeecCCCCCceEEEEeCCCC-------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+...++..+. .|.+..++...- .-++-+....+..+-.+....++..+++.+..|.++-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4445555543 666666664321 11111222222344444444455678888999998888764
No 371
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=69.99 E-value=1.4e+02 Score=33.28 Aligned_cols=313 Identities=12% Similarity=0.092 Sum_probs=150.2
Q ss_pred eecCCCccccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCc----------------------------EE
Q 001319 319 TYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGE----------------------------IT 370 (1101)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~----------------------------i~ 370 (1101)
.|.-.+..+|.++..+. ++.-.|-..+....|.-||+.=+++...+|+ +.
T Consensus 155 aY~ldG~~LW~idlg~n--i~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~ 232 (591)
T 2zux_A 155 AYKLDGTKLWRINLGKN--IRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLT 232 (591)
T ss_dssp EECTTSCEEEEEECCTT--SCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEE
T ss_pred EEECCCCEEEEEcCCCC--cccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEE
Confidence 45555566776654331 1111266788999999999866677767775 56
Q ss_pred EEecCCCceeccccceeecccccCccccc-cccccCCcc--EEEEEEccCCC--EEEEEE---CCCeEEEEeecCCcccc
Q 001319 371 LWELAMRDRLVSKPFKIWDMAACSLPFQA-SIFKDVPIS--VSRVAWSPDGN--YVGVAF---TKHLIQLYSYAGSNDLR 442 (1101)
Q Consensus 371 iwd~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~h~~~--v~~~~~spdg~--~las~~---~d~~i~vwd~~~~~~~~ 442 (1101)
|+|=.+|+.+...++.. ....... ---.++... ..++++- ||+ .++.+- ....|..||..+++...
T Consensus 233 vfdG~TG~~l~~~~~~p-----~rg~~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~ 306 (591)
T 2zux_A 233 VFQGSTGKELVTANFEP-----ARGNVSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK 306 (591)
T ss_dssp EEETTTCCEEEEEECSS-----CCCCGGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEE
T ss_pred EEeCCCCCEEecccCCC-----CCCcccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEE
Confidence 66666666554311100 0000000 000001000 1222221 221 222221 12246677776664322
Q ss_pred cceeee----------cc-cCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEe-ecCCcCeEEEecccCCCccE
Q 001319 443 QHSQID----------AH-VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF-EGHEAPVYSICPHHKENIQF 510 (1101)
Q Consensus 443 ~~~~l~----------~h-~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~ 510 (1101)
. ..+. +. .....-..+.-||+. -++.|+ .+.|.+|+.+... .+|...+..-.|.|+..|.-
T Consensus 307 ~-W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~d-EIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlE 379 (591)
T 2zux_A 307 L-WTLDSSKSGNEAFAGQGNHNLSIADVDGDGKD-EIIFGS-----MAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLE 379 (591)
T ss_dssp E-EEEETTSTTCGGGSSCCCSCCEEECCSSSSSC-EEEETT-----EEECTTSCEEEECSCCCCSCEEEECCCTTSSSCE
T ss_pred E-EEecCCCCCcccccccCCCCCeeEeCCCCCCc-eEEEee-----eEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcE
Confidence 1 1111 10 023444556667776 566555 2567777776655 37888877777877766667
Q ss_pred EEEeccCC----eEEEEecCCCCeeeeccCCCC--ceEEEEEccCCC--EEEEeecCCCCCceEEEEeCCCCeeEEEecc
Q 001319 511 IFSTAIDG----KIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGS--RLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 511 l~s~~~d~----~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
++.+.+++ -..+.|..+++.++....... ......|.|+.. .+.+ . . .+++.. |+.+.....
T Consensus 380 v~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-~-----~---~l~~~~-G~~i~~~~p 449 (591)
T 2zux_A 380 VFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA-N-----G---SLYSAK-GVKIGSGVP 449 (591)
T ss_dssp EEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE-T-----T---EEECTT-SCBCSSCCC
T ss_pred EEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe-c-----C---ceECCC-CCEecCCCC
Confidence 77776652 344578888888776654322 233333444422 1221 0 0 234433 333222100
Q ss_pred cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-----CCCCCCeeEE--ecCC-CEEEEEE-cCCcE
Q 001319 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRF--SKEG-NLLAVTT-ADNGF 653 (1101)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~--s~~g-~~l~~~~-~d~~i 653 (1101)
...-..+-|..+...-+.- .+.|.-|+...++....+...+ +...-.++.. --|. .-++..+ .+..+
T Consensus 450 --~~~N~~i~WdGDl~relld--~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~L 525 (591)
T 2zux_A 450 --SSTNFGIWWDGDLLREQLD--SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSAL 525 (591)
T ss_dssp --SCCSEEECCSSSSSCEEEE--TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEE
T ss_pred --CCcceeEEECCCCcHhhhC--CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeE
Confidence 1112235566665333332 2368889887776443333321 0111223332 2232 2344444 45569
Q ss_pred EEEEccc
Q 001319 654 KILANAI 660 (1101)
Q Consensus 654 ~iwd~~~ 660 (1101)
+||....
T Consensus 526 rIYtt~~ 532 (591)
T 2zux_A 526 RIYTTTI 532 (591)
T ss_dssp EEECCCC
T ss_pred EEEeCCC
Confidence 9997643
No 372
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=69.70 E-value=1.3e+02 Score=32.54 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=115.9
Q ss_pred CCEeEEEecCCCCeEEEEcC-CeEEEEECCCc---------e--EEEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEE
Q 001319 805 EAVPCIALSKNDSYVMSATG-GKISLFNMMTF---------K--VMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~d-g~i~vwd~~~~---------~--~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~ 871 (1101)
..|..++...+ ..++...+ +.|+.|-.... . ....+.. ....|..++. +....++-..||.|+
T Consensus 68 ~~i~~va~G~~-ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~---G~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 68 HQIVSVTCGAD-HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC---GDSHCLAVTMEGEVQ 143 (406)
T ss_dssp SCEEEEEECSS-EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEE
T ss_pred CCEEEEEeCcc-eEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE---ChhheEEEcCCCcEE
Confidence 35666665433 23334444 58888854211 0 1111111 2235666665 445666678899999
Q ss_pred EEEeecc-e----------EEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc------cceEEeecCC
Q 001319 872 IYNVRVD-E----------VKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR------KSVTIHIPAG 933 (1101)
Q Consensus 872 iwd~~~~-~----------~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~------~~~~~~~~~~ 933 (1101)
.|-.... + ....+... ...|..++... .+.+....||.|..|-.....++ ..........
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~ 221 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA--EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS 221 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC--CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc
Confidence 9975431 1 11112211 22566666643 45555678999999975442221 1111111111
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCcee-----------eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 934 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER-----------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 934 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-----------~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
.....+..++... ...++...++.|..|-...... ...+.... ...|..|+.. ..+.+.-..||
T Consensus 222 ~~~~~i~~va~G~-~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~v~~i~~G--~~hs~alt~~G 296 (406)
T 4d9s_A 222 TGGEKMSMVACGW-RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS--NSFISQISGG--WRHTMALTSDG 296 (406)
T ss_dssp STTCCEEEEEECS-SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT--TSCEEEEEEC--SSEEEEEETTS
T ss_pred cCCceEEEEEECC-CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccC--CCCEEEEEec--CCEEEEEcCCC
Confidence 1112333333322 2233446688888886443211 11111111 3446666543 44555566899
Q ss_pred cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1003 NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.|+.|-....-.+..-.......+..+.......+..++. .....+.-..||.|..|-.-
T Consensus 297 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~---G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 297 KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC---GWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp CEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE---CSSEEEEEETTSCEEEEECC
T ss_pred eEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe---CCCeEEEEeCCCCEEEecCC
Confidence 9999975542111100000000000000011122334442 34455666789999999863
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=68.31 E-value=1.2e+02 Score=31.61 Aligned_cols=169 Identities=9% Similarity=0.038 Sum_probs=94.1
Q ss_pred CCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCCccccc---eEEeecCCCCCCCcceEE-EcCCCCEEEEEeCCeEEE
Q 001319 889 KRITGLAFST---SLNILVSSGADAQLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRVQ-FNADQVRMLVVHETQLAI 961 (1101)
Q Consensus 889 ~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~-~s~d~~~l~~~~d~~i~v 961 (1101)
..|.++..-+ +..+++.++.+|.|+--.+........ ..+....+ ..+..+. .+.+...++.+..|.+..
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~---D~lv~~~~~~~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN---DELVGAVLCSAGDDLLLVSANGQSIR 171 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT---CCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC---CEEEEEEEecCCCEEEEEECCCeEEE
Confidence 4455554333 577999999999999998776443221 11222222 3344433 344445555577888887
Q ss_pred EEcC--Ccee-------eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCC
Q 001319 962 YDAS--KMER-------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1032 (1101)
Q Consensus 962 ~d~~--~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 1032 (1101)
+... .-.. +..+.... ...|.++...+++.+|+..+..|.++.-.+.......+-. ........ -.
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~-~G~~~~~l--~~ 246 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFNI--DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG-KGVLTVMY--DR 246 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCCT--TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS-CCEESSCC--CT
T ss_pred EECcccccCcCCcCCCCeeeecCCC--CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC-CcEEEEEe--cC
Confidence 7766 2211 11111111 5667777777777899999999999988876544332210 00000000 01
Q ss_pred CccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
....++.+.... +...++..+.+|.+.-++...
T Consensus 247 ~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 247 RRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred CCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 122334444333 456677778888888787643
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.09 E-value=31 Score=42.46 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
..|.+++..++..++++-+.|+++|+|++.++++.....+
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3577888888889999999999999999999988766554
No 375
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.53 E-value=1.1e+02 Score=30.93 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=92.2
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-C
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-N 815 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 815 (1101)
...+..+.......+++..++.|.+.--.. ++...+..... + .....|..+.... +
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~-------------------~~lp~~~~~~l-l---~~~e~i~~v~~~~~~ 79 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAG-------------------SQALQGSKVSL-K---SREEKIVGAFIREKF 79 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECS-------------------HHHHTSEECCC-S---STTCCEEEEEEGGGS
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEh-------------------hhCccCccccc-C---CCCCEEEEEECCcCC
Confidence 345556655666667888888887653221 11110000001 1 2455566654421 4
Q ss_pred CCeEEEEc-CCeEEEEECCCce------EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec---------ce
Q 001319 816 DSYVMSAT-GGKISLFNMMTFK------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---------DE 879 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~---------~~ 879 (1101)
..+++..+ +|.++-..+.... ....+. ....+..+.... +...|+..+..|.++.++... |.
T Consensus 80 ~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 80 GNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp CSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 56666666 8999988875432 111222 234566655555 556788888999998887653 11
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
..-.+.. ...|.++...+++..++..+..|.++...+...
T Consensus 158 ~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 158 QGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp ECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 2122322 356666666666778899999999999887653
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.80 E-value=72 Score=36.36 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=45.6
Q ss_pred CCcceEEEcCCCCEEEEEeC-------------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEE
Q 001319 937 TGDTRVQFNADQVRMLVVHE-------------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 998 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 998 (1101)
...-.|+|+|.|.++++-+. ..+.+.+..+++..+.+..+. ..+++.++|+||++.|++.
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 45567999999996666331 246667777888777666654 7899999999999998875
No 377
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.32 E-value=1.5e+02 Score=30.90 Aligned_cols=213 Identities=10% Similarity=0.058 Sum_probs=111.9
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE-EecC-
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI-ALSK- 814 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~- 814 (1101)
...+..+........++..++.|.+.......-+ .+. | ...|..+...+.. .....|.++ .+..
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp---~~~---------r-~~~G~~i~~~l~l-~~~e~i~~~~~~~~~ 106 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLP---EAS---------R-TARGQHVANLLAF-QPEERIAQVIQIRGY 106 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSC---BCC---------S-SSCCEEHHHHTTC-CTTCCEEEEEEESST
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCc---CCC---------c-cCCCEEHHHccCC-CCCCEEEEEEEeccC
Confidence 3445555555666667777777766543321100 000 0 0112222111211 234455554 3332
Q ss_pred -CCCeEEEEc-CCeEEEEECCCceE-------EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee--c------
Q 001319 815 -NDSYVMSAT-GGKISLFNMMTFKV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR--V------ 877 (1101)
Q Consensus 815 -dg~~la~~~-dg~i~vwd~~~~~~-------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~--~------ 877 (1101)
+..+++..+ +|.++-..+..... ...+.. ...+..+.... ....|+..+..|.+..+... .
T Consensus 107 ~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr 184 (327)
T 3uc1_A 107 TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGR 184 (327)
T ss_dssp TSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCT
T ss_pred CCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCc
Confidence 466777776 89999887654322 122332 34555555555 55677788899999988877 3
Q ss_pred ---ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc--eEEeecC-CCCCCCcceEE-EcCCCCE
Q 001319 878 ---DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS--VTIHIPA-GKTPTGDTRVQ-FNADQVR 950 (1101)
Q Consensus 878 ---~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~--~~~~~~~-~~~~~~v~~~~-~s~d~~~ 950 (1101)
|...-.+. ....|.++...+++..|+..+..|.++.-.+........ .-..... ......+..+. ...+...
T Consensus 185 ~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 185 ATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp TSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEE
T ss_pred CCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccE
Confidence 11111222 245677777766677899999999999888765433211 1111111 11012333333 3444455
Q ss_pred EEEEeCCeEEEEEcCC
Q 001319 951 MLVVHETQLAIYDASK 966 (1101)
Q Consensus 951 l~~~~d~~i~v~d~~~ 966 (1101)
++++.+|.+.-++...
T Consensus 264 ~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 264 YAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEGGGCEEEEEGGG
T ss_pred EEEcCCCeEEEEehhh
Confidence 5556777777776653
No 378
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.17 E-value=1.5e+02 Score=30.41 Aligned_cols=240 Identities=11% Similarity=0.088 Sum_probs=123.5
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEE---------EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-------
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMT---------TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV------- 877 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~---------~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~------- 877 (1101)
+..++++.+ +|.|+--.+.+.+... .+.. ...+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 344555555 7777766665432211 1122 23444444444 456677777888877766532
Q ss_pred --ceEEE---eeccCCCCeeEEEEc---CCCCEEEEEeCCCcEEEEECCCCccccc---eEEeecCCCCCCCcceE-EEc
Q 001319 878 --DEVKS---KLKGHQKRITGLAFS---TSLNILVSSGADAQLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRV-QFN 945 (1101)
Q Consensus 878 --~~~~~---~~~~h~~~V~~l~~s---~d~~~l~s~s~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~~-~~s 945 (1101)
|..+. .+. ....|.++..- .++.+++..+..|.++--.+........ ..+....+ ..+..+ ...
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~---d~lv~~~~~~ 155 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG---DELIGVDLTS 155 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT---CCEEEEEEEC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC---CEEEEEEEeC
Confidence 22221 122 23456655442 3556899999999999998764332211 11222222 333333 334
Q ss_pred CCCCEEEEEeCCeEEEEEcCCcee-------eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 001319 946 ADQVRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 946 ~d~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.+...++.+.+|.+..+....-.. +..+.... ...|.++....++..|++.+..|.++-.++.......+-
T Consensus 156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTT
T ss_pred CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCC
Confidence 455556667788888887643221 11111111 556777766666678888999999988877543322111
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
. ........ -.....++.+.... +...++..+.+|.+.-..+..
T Consensus 234 ~-kG~~~~~~--~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 234 T-KGVISIKV--TERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp S-CCEESSCC--CTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred C-CCEEeeEe--cCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 0 00000000 11122334444434 355667777888877766654
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.78 E-value=84 Score=36.50 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=31.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 982 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 982 ~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.|.++.+ +..+|++-+.|..+|+|+++++.++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665554 578999999999999999999998887765
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=57.56 E-value=35 Score=38.38 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=45.4
Q ss_pred CCcceEEEcCCCCEEEEEeC-------------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 937 TGDTRVQFNADQVRMLVVHE-------------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.....++|+++|.+.++.+. ..+..++..+++....+.... ...++.++||||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 56778999999988775331 257777777787766654432 56799999999999988764
No 381
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=55.34 E-value=2.1e+02 Score=30.25 Aligned_cols=147 Identities=11% Similarity=0.163 Sum_probs=74.3
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCc-------ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c----
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---- 482 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~---- 482 (1101)
-|+..++++.+.+|.|+--.+..-+ .+.- ..++ ..+.+..+....... .++..+..|.+.-+. .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~-~~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSA-ASTK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEE-EECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCcee-cccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 3678899999999999876554311 1110 0122 234455555544444 344344456554443 1
Q ss_pred -----CCceeEE---eecCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCCe-----ee--eccCCCCceEEEEE
Q 001319 483 -----SGRKLFN---FEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-----RV--DYDAPGHWCTTMLY 546 (1101)
Q Consensus 483 -----~~~~~~~---~~~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~-----~~--~~~~~~~~v~~~~~ 546 (1101)
.|..+.. +. ....|.++..... .+..+|+.++..|.++...+..... .. .+.. +..+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1222111 22 2344555543221 2346899999999999887643221 11 2222 334444444
Q ss_pred ccCCCEEEEeecCCCCCceEEEEeC
Q 001319 547 SADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 547 s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
......++..+. .|.+..++.
T Consensus 158 ~~~~~~i~l~T~----~G~~irf~~ 178 (370)
T 3l6v_A 158 TDGDRDVLLFAS----NGKTVRFGE 178 (370)
T ss_dssp ECSCCEEEEEET----TSEEEEEEG
T ss_pred eCCCceEEEEeC----CCeEEEEEc
Confidence 444445555543 566655654
No 382
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=52.86 E-value=2.3e+02 Score=29.96 Aligned_cols=239 Identities=8% Similarity=0.036 Sum_probs=123.4
Q ss_pred CCCCeEEEEc-CCeEEEEECCC---------ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec------
Q 001319 814 KNDSYVMSAT-GGKISLFNMMT---------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV------ 877 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~---------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~------ 877 (1101)
++..++++.+ +|.|+--.+.. +..-..++ ....+..+.... ....|+..+..|.++-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVN-THDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEec-CCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 4566666666 78888765432 12222233 244566666655 556677778888887766432
Q ss_pred ---ceEEEe---eccCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCCcccc---ceEEeecCCCCCCCcceEEE-
Q 001319 878 ---DEVKSK---LKGHQKRITGLAFST---SLNILVSSGADAQLCVWSIDTWEKRK---SVTIHIPAGKTPTGDTRVQF- 944 (1101)
Q Consensus 878 ---~~~~~~---~~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~- 944 (1101)
|..+.. +. ....|.++..-. ++.+|+.++..|.++.-.+....... ...+....+ ..+..+..
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~---d~lv~v~~~ 158 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG---DALVGVALT 158 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT---CCEEEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC---CEEEEEEEe
Confidence 222211 22 234565554432 45689999999999999876544321 111222111 33333333
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCcee-------eeEeccCCCCCCCEEEEEEcc---------------------------
Q 001319 945 NADQVRMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSC--------------------------- 990 (1101)
Q Consensus 945 s~d~~~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~v~~s~--------------------------- 990 (1101)
..+...++++.+|.+..+....-.. +..+.... ...|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAK--GEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEEEECCC-------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCC--CCEEEEEEEecccccccccccccccccccccccccccc
Confidence 4444455557788877777543211 11111111 44555555444
Q ss_pred --------CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEE
Q 001319 991 --------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 991 --------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
++..|++.+..|..+...+.......+-. ........ -.....++.+.+.. +...++..+..|.+.-.
T Consensus 237 ~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~-kGv~~~k~--~~~~g~lv~~~~v~-~~d~i~liT~~G~~iR~ 312 (370)
T 3l6v_A 237 VIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGT-QGVIGIQT--TERNGKLVRAVLLG-STDEVMLISDGGTLVRT 312 (370)
T ss_dssp ----------CEEEEEETTSEEEEEEGGGSCCBCTTS-CCEESSCC--CTTTCSEEEEEEEC-TTCEEEEEETTCCEEEE
T ss_pred ccccccccCCceEEEeeCCCCEEEEEHHHhcccccCC-cceEEEEe--cCCCCcEEEEEEeC-CCceEEEEcCCCeEEEe
Confidence 45689999999999988877654432211 00000000 01122334444443 34555556666665555
Q ss_pred eC
Q 001319 1063 EP 1064 (1101)
Q Consensus 1063 d~ 1064 (1101)
.+
T Consensus 313 ~v 314 (370)
T 3l6v_A 313 RG 314 (370)
T ss_dssp EG
T ss_pred eH
Confidence 44
No 383
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.04 E-value=58 Score=33.55 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHccCCHHHHHHHHHhhccc-ccccCHHHHHHHH
Q 001319 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKV-FSTFNEELFKEIT 116 (1101)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1101)
..+|++.|.+|+|-+|...+..+ ..-. +.+++.++|++.|..-..- ++.-....--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl-----------~~Ry---------~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI-----------ANRY---------VRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-----------HHHH---------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH-----------HHHH---------HHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67899999999999999888765 2112 3345566666666543222 1122233444555
Q ss_pred HhhcccCccccccccccCCchHHHHHHHHHHHhhcccCcccccccCCCCCChHHHHHHHHHHHHHHHhcC
Q 001319 117 QLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLC 186 (1101)
Q Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~c 186 (1101)
.++.-- ... ....-..+++.+|. +|-+.+|++. | ....+|+.|++|-....
T Consensus 77 ~llvev-~~~----~~~~~~~~~~~rl~-~l~~~~p~~~-----------~--~r~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-YDL----AEVKVDDISVARLV-RLIAELDPSE-----------P--NLKDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-HHH----TTCCCSHHHHHHHH-HHHTTCCTTC-----------T--THHHHHHHHHHHHHHTS
T ss_pred HHHHHH-HHH----cCCCCCHHHHHHHH-HHHHHCCCCC-----------c--hHHHHHHHHHHHHhhcC
Confidence 544421 110 11112345556665 4445555532 1 35788888999987643
No 384
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=50.22 E-value=2.3e+02 Score=29.13 Aligned_cols=193 Identities=9% Similarity=0.099 Sum_probs=107.3
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEE-------EEee-CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-------
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVM-------TTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD------- 878 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~-------~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~------- 878 (1101)
+..++++.+ +|.|+-..+...+.. ..+. .....+..+.... ....++..+..|.++-+....-
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 445555555 788877765433211 1111 1223455555555 4566778888998887765421
Q ss_pred --eEE---EeeccCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCCcccc---ceEEeecCCCCCCCcceEEE-cC
Q 001319 879 --EVK---SKLKGHQKRITGLAFST---SLNILVSSGADAQLCVWSIDTWEKRK---SVTIHIPAGKTPTGDTRVQF-NA 946 (1101)
Q Consensus 879 --~~~---~~~~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~-s~ 946 (1101)
..+ -.+. ....|.++...+ +..+|+..+..|.++.-.+....... ...+.... ...+..+.. .+
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~---~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND---KDFVTSAEIVFK 161 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT---TCCEEEEEEECT
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC---CCEEEEEEEeCC
Confidence 110 1122 123455554433 45788899999999998876543221 11122222 134444444 44
Q ss_pred CCCEEEEEeCCeEEEEEcCCce-------eeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 947 DQVRMLVVHETQLAIYDASKME-------RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 947 d~~~l~~~~d~~i~v~d~~~~~-------~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
+...++++.+|.+..+....-. -+..+.... ...|..+....++..|++.+..|.....++.....
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~--~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~ 234 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE--GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISE 234 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT--TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCB
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC--CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcc
Confidence 5555666778888888775421 122222211 45666766666677788889999999998876433
No 385
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.72 E-value=91 Score=39.31 Aligned_cols=37 Identities=8% Similarity=0.241 Sum_probs=30.9
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
.+.+++..+ +..++++-+.|++++||++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 355566666 7789999999999999999999988764
No 386
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=46.97 E-value=17 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001319 7 ELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1101)
Q Consensus 7 e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1101)
-+.-||-.||.=.||+-|...|+.|+|.+
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 46789999999999999999999999996
No 387
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=46.96 E-value=23 Score=31.00 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHHHhhcCHH-HHHHHHHHhcCCCCCHHHHHHHHhccCHHHHHHHHcCCCCCC-CccchhhHHHHHHHh-
Q 001319 3 SLSRELVFLILQFLEEEKFK-ESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGFTKVD-DNRYSMKIFFEIRKQ- 79 (1101)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~-~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~-~~~~~~~~~~~i~~~- 79 (1101)
-...++...|+..|.+.||- .+...+.++.|+..+ +++.|+..++.+.+.. .......++.+-.++
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~~ 87 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEEI 87 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhcC
Confidence 34567888899999999984 455566666665432 3355777788775442 111222233222222
Q ss_pred ---------HHHH-HHccCCH-HHHHHHHHhhcccc
Q 001319 80 ---------KYLE-ALDRQDK-AKAVDILVNDLKVF 104 (1101)
Q Consensus 80 ---------~~le-ll~~~~~-~~a~~~l~~~l~~~ 104 (1101)
.+|| +|..+++ .+|+.++| .|.|.
T Consensus 88 ~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir-~L~P~ 122 (130)
T 2k9m_A 88 YPEEEEILKKALRDLKRGKKLKPEIKGKLS-RLRLF 122 (130)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCHHHHHHHH-TCCSC
T ss_pred chhHHHHHHHhHHHHHHcCCHHHHHHHHHH-cCCCC
Confidence 4677 7776664 34666665 44443
No 388
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.43 E-value=1.5e+02 Score=29.96 Aligned_cols=84 Identities=14% Similarity=0.019 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcC-HHHHHHHHHH--hcCCCC-C--H--HHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHH
Q 001319 6 RELVFLILQFLEEEK-FKESVHKLEK--ESGFFF-N--M--KYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIR 77 (1101)
Q Consensus 6 ~e~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~-~--~--~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 77 (1101)
-+.++++.+++...| +.++.+.|++ +.++.. + + ..=.-....|++++|+..+.. +.+. . +.+. .
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~--~-~~~~-l 136 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL--E-CMAM-T 136 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH--H-HHHH-H
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH--H-HHHH-H
Confidence 356777888888877 7777777776 333322 2 1 222345577999999999987 2221 1 2111 1
Q ss_pred HhHHHHHHccCCHHHHHHHHHhh
Q 001319 78 KQKYLEALDRQDKAKAVDILVND 100 (1101)
Q Consensus 78 ~~~~lell~~~~~~~a~~~l~~~ 100 (1101)
-+. ++..|+.++|+..+++-
T Consensus 137 ~~~---~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 137 VQI---LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHH---HHHTTCHHHHHHHHHHH
T ss_pred HHH---HHHCCCHHHHHHHHHHH
Confidence 122 34568888888888764
No 389
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.77 E-value=78 Score=36.05 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=48.1
Q ss_pred ceEEEEEccCCCEEEEeecC--------CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE
Q 001319 540 WCTTMLYSADGSRLFSCGTS--------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
..-.|+|++.|++++.--.+ ..+...+.+.+..+++..+.+.+..+..++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35679999999855543110 01345677788889999998888888889999999999888765
No 390
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=36.40 E-value=3.8e+02 Score=27.65 Aligned_cols=243 Identities=6% Similarity=0.065 Sum_probs=122.4
Q ss_pred CCCCeEEEEc-CCeEEEEECCCceE----EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec---------ce
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTFKV----MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---------DE 879 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~---------~~ 879 (1101)
|+..++++.+ +|.|+--.+...+. -..+.. ...+..+.... ....|+..+..|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3445555555 77777665432110 111222 33454555554 556677778889877766532 23
Q ss_pred EEEee-c-cCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCcccc----ceEEeecCCCCCCCcceEEE-cCCCC
Q 001319 880 VKSKL-K-GHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWEKRK----SVTIHIPAGKTPTGDTRVQF-NADQV 949 (1101)
Q Consensus 880 ~~~~~-~-~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~lwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~-s~d~~ 949 (1101)
.+..+ . .....|.++..-++ +.+++.++.+|.++--.+....... ...+....+ ..+..+.. ..+..
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~---d~lv~~~~~~~~~~ 157 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND---DQVVDVHLTDGMNE 157 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT---CCEEEEEEECSCSE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC---CEEEEEEEeCCCCE
Confidence 22111 1 12234655433332 5689999999999999886543322 111222222 33333333 44455
Q ss_pred EEEEEeCCeEEEEEcCCcee-------eeEeccCCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeEeeCCC
Q 001319 950 RMLVVHETQLAIYDASKMER-------IRQWTPQDALSAPISCAVYSCNSQ-LVFATFCDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 950 ~l~~~~d~~i~v~d~~~~~~-------~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
.++++.+|.+..+....-.. +..+.... ...|.++..-+++. .|++.+..|..+..++.......+-. .
T Consensus 158 i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~-k 234 (323)
T 1wp5_A 158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE--GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK-R 234 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT--TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS-C
T ss_pred EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC--CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC-C
Confidence 55567788888887653221 12222211 45566665444455 78888888888887776532221110 0
Q ss_pred CcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1022 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
........ -.....+..+.... ++..++..+..|.+.-..+..
T Consensus 235 Gv~~~~~~-~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILREL-KANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCC-SSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeec-CCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 00000000 01111223332223 345667777888877666644
No 391
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.37 E-value=1e+02 Score=31.41 Aligned_cols=105 Identities=9% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcC-HHHHHHHHHHhcCCCCC--HHHHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHHHhHHH
Q 001319 7 ELVFLILQFLEEEK-FKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1101)
Q Consensus 7 e~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~l 82 (1101)
++..++...+...| |.++...|++ +-..+ .....-....|++++|+..+...... |+. ..+.+. ..++
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~l~-~a~~ 173 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----TLTQLA-TAWV 173 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----HHHHHH-HHHH
Confidence 34444445555555 7788888877 22222 33344556789999999998886322 222 111111 1222
Q ss_pred HHH-ccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001319 83 EAL-DRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120 (1101)
Q Consensus 83 ell-~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~ 120 (1101)
.++ ..++.++|+.++++-+.-. ..++.-+..+..++.
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 222 3467888888887644332 224555555554443
No 392
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.05 E-value=1.4e+02 Score=33.60 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=46.5
Q ss_pred ceEEEEEccCCCEEEEeecC--------CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE
Q 001319 540 WCTTMLYSADGSRLFSCGTS--------KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
....|+|.++|.+.+..-.. ..+...+..++..++++.+.+.+.....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 46789999999877732110 01233688888888988877766555568889999999988775
No 393
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=33.35 E-value=1.4e+02 Score=30.87 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=56.4
Q ss_pred HHHHHHHHhccCH---HHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccc-cccCHHHHH
Q 001319 38 MKYFEEKVQAGDW---DEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVF-STFNEELFK 113 (1101)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~-~~~~~~~~~ 113 (1101)
+.+|++.|.+|+| -+|...+..+ ..-. +.+++..+|++.|..-..-| +.-....--
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi-----------~~Ry---------~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV-----------AARY---------SKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH-----------HHHH---------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH-----------HHHH---------HhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 6789999999999 8887777655 2112 33455555555554321111 112233444
Q ss_pred HHHHhhcccCccccccccccCCchHHHHHHHHHHHhhcccCcccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 001319 114 EITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQL 185 (1101)
Q Consensus 114 ~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~~ 185 (1101)
.|+.+|.-- ... ..+.-...++.+|.+-+. .+|++ .+ ....+|+.|++|-...
T Consensus 76 DL~~llvev-y~~----~~~~~~~~~~~rL~~L~~-~~~~~------------~p-~r~~fi~~ai~WS~~~ 128 (336)
T 3lpz_A 76 DLAVLLVDT-FRQ----AGQRVDGASRGKLLGCLR-LFQPG------------EP-VRKRFVKEMIDWSKKF 128 (336)
T ss_dssp HHHHHHHHH-HHH----HTCCCCHHHHHHHHHHHT-TSCTT------------CH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHH----cCCCCCHHHHHHHHHHHH-hCCCC------------Cc-HHHHHHHHHHHHHhhc
Confidence 555544421 100 111112345555554443 44542 12 2477888898888763
No 394
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=33.03 E-value=2e+02 Score=23.82 Aligned_cols=88 Identities=7% Similarity=-0.041 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHH
Q 001319 8 LVFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1101)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~l 82 (1101)
...+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.......... .. +.+.+ -..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~-~~~~l-a~~-- 93 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IK-GYTRK-AAA-- 93 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-HHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hH-HHHHH-HHH--
Confidence 344445555556677777777776555432 222233456789999988877652221111 11 22111 112
Q ss_pred HHHccCCHHHHHHHHHhhc
Q 001319 83 EALDRQDKAKAVDILVNDL 101 (1101)
Q Consensus 83 ell~~~~~~~a~~~l~~~l 101 (1101)
+...++.++|+..+++-+
T Consensus 94 -~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 -LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp -HHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhhHHHHHHHHHHHH
Confidence 234588888888887643
No 395
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.19 E-value=1.8e+02 Score=33.80 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=27.9
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR 442 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~ 442 (1101)
..|.++.+ +..+|++-+.|.++|+||+++++++.
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~ 255 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQ 255 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence 35666554 57899999999999999999987665
No 396
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.02 E-value=73 Score=40.17 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
..+.+++..++..++++-+.|+++|+|++.++++.....+
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3456677778889999999999999999999988766554
No 397
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=31.90 E-value=1.5e+02 Score=25.15 Aligned_cols=96 Identities=7% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHhhcCHHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHHHhHHHHHHccC
Q 001319 15 FLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDRQ 88 (1101)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~lell~~~ 88 (1101)
+++.--|.++...+++--.+..+ ...=.-....|+|++|+..+...... |.. .. +.+ -+-.. +...|
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~-a~~-~lg~~---~~~~~ 95 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IK-GYI-RKAAC---LVAMR 95 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHH-HHHHH---HHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hH-HHH-HHHHH---HHHCC
Confidence 44445578887777765444332 22223344568888888887764222 221 11 111 11122 23458
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHHHh
Q 001319 89 DKAKAVDILVNDLKVFSTFNEELFKEITQL 118 (1101)
Q Consensus 89 ~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~ 118 (1101)
+.++|+..+++-+.- ..-+++-...|..+
T Consensus 96 ~~~~A~~~~~~al~l-~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 96 EWSKAQRAYEDALQV-DPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CcCCHHHHHHHHHh
Confidence 888888888764331 12244444444433
No 398
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.07 E-value=1.9e+02 Score=29.09 Aligned_cols=102 Identities=12% Similarity=0.134 Sum_probs=55.7
Q ss_pred HHHHhhcCHHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHcc
Q 001319 13 LQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87 (1101)
Q Consensus 13 ~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~ 87 (1101)
..++..--|.++...|++-.....+ ...-+-.+..|++++|+..+..+.....+. . ...-..-+++...
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~----~--~~~~~~~~~l~~~ 198 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT----R--YQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH----H--HHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch----H--HHHHHHHHHHHhh
Confidence 3344444466766666665444333 334445667899999999998873322111 1 1112223445555
Q ss_pred CCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 001319 88 QDKAKAVDILVNDLKVFSTFNEELFKEITQLLTL 121 (1101)
Q Consensus 88 ~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~ 121 (1101)
++..+|+..+++-+.-- .-+.+-...|+.++..
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 66677777777644322 2245555566665553
No 399
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.51 E-value=32 Score=27.40 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.8
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 001319 1 MSSLSRELVFLILQFLEEE 19 (1101)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~ 19 (1101)
|+..++++...|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6788999999999999875
No 400
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=28.34 E-value=2.9e+02 Score=24.15 Aligned_cols=93 Identities=13% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCC-CCCccchhhHHHHHHHhHHHHHHccCCHHHHH
Q 001319 21 FKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTK-VDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV 94 (1101)
Q Consensus 21 ~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~ 94 (1101)
+.++...+++-.....+ ...=+-....|+|++|++++.+... .|++. . +.+ ..-..| ...|+.++|+
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~-a~~-~lg~~~---~~~~~~~~A~ 85 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--K-AHR-FLGLLY---ELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H-HHH-HHHHHH---HHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--H-HHH-HHHHHH---HHcCchHHHH
Confidence 34455555554443332 2222345678999999999887522 23321 1 222 222222 3468999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHhhcc
Q 001319 95 DILVNDLKVFSTFNEELFKEITQLLTL 121 (1101)
Q Consensus 95 ~~l~~~l~~~~~~~~~~~~~l~~~l~~ 121 (1101)
..+++-+.- ..-+++-+..|+.++..
T Consensus 86 ~~~~~al~~-~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 86 ECYRRSVEL-NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 999875432 12366777788876654
No 401
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=28.14 E-value=65 Score=23.77 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCC
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGF 34 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~ 34 (1101)
|+.+.|||+--|.-=||...|..|..+.+.
T Consensus 16 Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 16 REILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 678999999999999999999999998775
No 402
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=27.93 E-value=2.2e+02 Score=27.76 Aligned_cols=91 Identities=12% Similarity=0.163 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhh-cCHHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCc-cchhhHHHHHHHh
Q 001319 7 ELVFLILQFLEE-EKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDN-RYSMKIFFEIRKQ 79 (1101)
Q Consensus 7 e~~~li~q~L~~-~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~-~~~~~~~~~i~~~ 79 (1101)
|+.....+.+.. .-|.++...+++--....+ ...-.-....|+|++|+.++......+.+ .... ..+...-.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS-ADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHH-HHHHHHHH
Confidence 333333444444 4477777777765433322 33334566789999998888775333222 1111 11222222
Q ss_pred HHHHHHccCCHHHHHHHHHhhc
Q 001319 80 KYLEALDRQDKAKAVDILVNDL 101 (1101)
Q Consensus 80 ~~lell~~~~~~~a~~~l~~~l 101 (1101)
.| ...|+.++|+..+.+-+
T Consensus 83 ~~---~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 83 IL---MKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HH---HHTTCHHHHHHHHHHHH
T ss_pred HH---HHcccHHHHHHHHHHHH
Confidence 22 33577777877776643
No 403
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=27.28 E-value=5.9e+02 Score=27.09 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=38.2
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCCC-e----------eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-N----------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~----------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
.+..++. -..+.++...+|.|+.|-.... + ....+..... ..|..+ +......+....+|.|+.
T Consensus 122 ~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~i~~v--a~G~~hs~alt~~G~v~~ 196 (406)
T 4d9s_A 122 RIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEG-IRIKMV--AAGAEHTAAVTEDGDLYG 196 (406)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTT-CCEEEE--EECSSEEEEEETTSCEEE
T ss_pred CEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCC-CcEEEE--ecCCCeEEEEeCCCCEEE
Confidence 3444444 3467777789999999975431 1 0111111111 123333 334556667778999999
Q ss_pred EEcc
Q 001319 656 LANA 659 (1101)
Q Consensus 656 wd~~ 659 (1101)
|-..
T Consensus 197 wG~n 200 (406)
T 4d9s_A 197 WGWG 200 (406)
T ss_dssp EECC
T ss_pred eeCC
Confidence 9754
No 404
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=25.21 E-value=7.6e+02 Score=27.71 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=71.9
Q ss_pred eEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC--------------CCcEEE
Q 001319 941 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC--------------DGNIGV 1006 (1101)
Q Consensus 941 ~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--------------dg~i~v 1006 (1101)
...-.++|.++.. ....+..+|.. ++.+..+....+....-..+...++|..|+++.. +..|..
T Consensus 211 ~~~g~~nG~l~~g-~G~~i~elD~~-Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~E 288 (571)
T 3elq_A 211 GIRETPRGTFTAV-QGQHWYEFDMM-GQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILE 288 (571)
T ss_dssp EEEECTTSCEEEE-EBTEEEEECTT-CCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEE
T ss_pred EEEecCCCCEEEe-cCcEEEEECCC-CcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEE
Confidence 3333466765553 33446666653 4444443332100000123556788988876531 335667
Q ss_pred EeCCCCceeEeeCCCCcCCCc--------------------------------ccC-------CCCccceEEEEEecCCC
Q 001319 1007 FDADTLRLRCYIAPSTYLSPS--------------------------------VLN-------GSQTVYPLVVAAHPLEP 1047 (1101)
Q Consensus 1007 wd~~~~~~~~~~~~~~~~~~~--------------------------------~~~-------h~~~~~~~~l~~~p~d~ 1047 (1101)
.| .+|+.+..+.....+... .++ ..+-..+.++.+.+.++
T Consensus 289 VD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd 367 (571)
T 3elq_A 289 VD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDD 367 (571)
T ss_dssp EC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTT
T ss_pred EC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCC
Confidence 77 788887766522211100 000 11334567888888555
Q ss_pred CEEEEEECCCeEEEEeCCCCCCccccCCCC
Q 001319 1048 NQFAIGLTDGSVKVMEPSESEGKWGVSPPV 1077 (1101)
Q Consensus 1048 ~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~~ 1077 (1101)
.+|+++-.- .|..-|. +++-.|.+..+.
T Consensus 368 ~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 368 SIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp EEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred EEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 666666555 7776675 788889987774
No 405
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=24.56 E-value=3e+02 Score=27.72 Aligned_cols=93 Identities=11% Similarity=-0.064 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhhcC-HHHHHHHHHHhcCCCCC----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHh
Q 001319 5 SRELVFLILQFLEEEK-FKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQ 79 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1101)
+.++--.....|.+.| |.++...|+.=.-...+ ...=.-+...|+|++|+.++......++..+...+.|.+ -
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L--G 178 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH--G 178 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH--H
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH--H
Confidence 4555555566677777 88888877533211111 112224567799999999998764444322111122222 2
Q ss_pred HHHHHHccCCHHHHHHHHHhhc
Q 001319 80 KYLEALDRQDKAKAVDILVNDL 101 (1101)
Q Consensus 80 ~~lell~~~~~~~a~~~l~~~l 101 (1101)
.- +...|+.++|+..+++-+
T Consensus 179 ~a--l~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 179 VA--AANLALFTEAERRLTEAN 198 (282)
T ss_dssp HH--HHHTTCHHHHHHHHHHHH
T ss_pred HH--HHHCCCHHHHHHHHHHHh
Confidence 22 335689999999998754
No 406
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.49 E-value=9e+02 Score=28.27 Aligned_cols=80 Identities=11% Similarity=0.022 Sum_probs=43.9
Q ss_pred ceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccC-C----CCCCCCeeEEec-CCCEEEEEEcC-------Cc
Q 001319 587 SNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAE-G----GLPNLPRLRFSK-EGNLLAVTTAD-------NG 652 (1101)
Q Consensus 587 ~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~----~~~~v~~v~~s~-~g~~l~~~~~d-------~~ 652 (1101)
.+..++++|.. ..++++...+.|+.++-. ++.-..+... . ....|.+++++| +...++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 67889999864 567777767776666533 3332222211 1 013578899998 44455544421 12
Q ss_pred EEEEEcccccccccc
Q 001319 653 FKILANAIGLRSLRA 667 (1101)
Q Consensus 653 i~iwd~~~~~~~~~~ 667 (1101)
..||...++.+..+.
T Consensus 103 ~~l~~S~DgG~TW~~ 117 (737)
T 2cn3_A 103 GAILRSTDRGETWEK 117 (737)
T ss_dssp CEEEEESSSSSSCEE
T ss_pred ccEEEeCCCCCCccc
Confidence 456665554344333
No 407
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=24.32 E-value=5.8e+02 Score=26.00 Aligned_cols=192 Identities=10% Similarity=0.071 Sum_probs=99.0
Q ss_pred cCCCEEEEEECCCeEEEEeecCCccccc------ceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC-----
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ------HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS----- 483 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~------~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~----- 483 (1101)
|+..++++.+.+|.|+--.+..-+..+. ...+... +.+..+....... .++..+..|.++-.. ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~--~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHD--YLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCC--EEEEEECCCeEEEEEHHHCCCCC
Confidence 5677888999999999887654322110 0012222 3344444444444 355556677666555 11
Q ss_pred ----Ccee---EEeecCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCCe-----e--eeccCCCCceEEEEEcc
Q 001319 484 ----GRKL---FNFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS-----R--VDYDAPGHWCTTMLYSA 548 (1101)
Q Consensus 484 ----~~~~---~~~~~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~-----~--~~~~~~~~~v~~~~~s~ 548 (1101)
|..+ ..+.. ...|.++..... .+..+++..+..|.++...+..... . ..+.. +..+..+....
T Consensus 83 r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~ 160 (312)
T 1suu_A 83 RASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVF 160 (312)
T ss_dssp -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEEC
T ss_pred ccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeC
Confidence 1110 11221 233444432211 1345788889999998887643211 1 12222 34455555544
Q ss_pred CCCEEEEeecCCCCCceEEEEeCCC----C---eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNESE----G---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~~----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
++..++..+. .|.+..+.... + +-++.+....+..+..+..-.++..+++.+..|.....++..
T Consensus 161 ~~~~i~l~T~----~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 161 KDEKVICLSK----KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeC----CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4555655554 67777776543 1 112222222233444444444566788899999999888754
No 408
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.64 E-value=3.2e+02 Score=22.73 Aligned_cols=55 Identities=7% Similarity=0.127 Sum_probs=27.9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEc
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 964 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~ 964 (1101)
..+.+..||++++... ++ +|...+... ..-..+.+..+|.+++...++...+|..
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~--------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR--------------GVDCTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS--------------CSSCEEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC--------------CcCEEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 4556666666655432 22 777554210 1123456667777665543443345543
No 409
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=23.13 E-value=2.9e+02 Score=22.01 Aligned_cols=87 Identities=6% Similarity=-0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHH
Q 001319 9 VFLILQFLEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1101)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~le 83 (1101)
..+...++...-|.++...+++--....+ ...-.-....|+|++|+.++.......... .. +.+.+ -..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~-~~~~~-a~~--- 81 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GK-GYSRK-AAA--- 81 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HH-HHHHH-HHH---
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HH-HHHHH-HHH---
Confidence 44445555556677777777764433222 222233456789999988877652221111 11 21111 111
Q ss_pred HHccCCHHHHHHHHHhhc
Q 001319 84 ALDRQDKAKAVDILVNDL 101 (1101)
Q Consensus 84 ll~~~~~~~a~~~l~~~l 101 (1101)
+...|+.++|+..+++-+
T Consensus 82 ~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 234688888888887643
No 410
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.89 E-value=7.1e+02 Score=26.53 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=42.4
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc------------eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 001319 846 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD------------EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC 913 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~------------~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~ 913 (1101)
..|..++. +....++-..||.|+.|-.... .....+..-...|..|+.... .-+....||.|.
T Consensus 294 ~~v~~ia~---G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~ 368 (423)
T 3mvd_K 294 KDIRHIAG---GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLY 368 (423)
T ss_dssp CSEEEEEE---CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCeEEEEc---ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEE
Confidence 45666655 4456666778999999975431 111222323336777776543 334447899999
Q ss_pred EEECCC
Q 001319 914 VWSIDT 919 (1101)
Q Consensus 914 lwd~~~ 919 (1101)
.|-...
T Consensus 369 ~wG~n~ 374 (423)
T 3mvd_K 369 SWGSGV 374 (423)
T ss_dssp EEECCT
T ss_pred EECCCC
Confidence 997665
No 411
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=22.01 E-value=2.3e+02 Score=23.91 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=47.4
Q ss_pred HhhcCHHHHHHHHHHhcCCCCC-----HHHHHHHHhccCHHHHHHHHcCCCCC-CCccchhhHHHHHHHhHHHHHHccCC
Q 001319 16 LEEEKFKESVHKLEKESGFFFN-----MKYFEEKVQAGDWDEVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALDRQD 89 (1101)
Q Consensus 16 L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~lell~~~~ 89 (1101)
.+..-|.++...+++--.+..+ ...=.-....|+|++|+..+...... +.........-.++...=.-+...++
T Consensus 19 ~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 98 (127)
T 4gcn_A 19 YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND 98 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence 3344477777777765444333 11222345668999988877664111 11100000000011111111234588
Q ss_pred HHHHHHHHHhhcccccccCHHHHHHHH
Q 001319 90 KAKAVDILVNDLKVFSTFNEELFKEIT 116 (1101)
Q Consensus 90 ~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1101)
.++|+..+++-|.- ..+++.+..|.
T Consensus 99 ~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 99 LSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 88888888765542 12455444443
No 412
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.49 E-value=6.7e+02 Score=25.70 Aligned_cols=193 Identities=8% Similarity=0.061 Sum_probs=96.7
Q ss_pred cCCCEEEEEECCCeEEEEeecCCccccc-ceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c---------CC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L---------SG 484 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~---------~~ 484 (1101)
|+..++++.+.+|.|+--.+..-+.... ...+... +.+..+....... .++..+..|.+.-.. . .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 5677888999999998776542110000 0023333 3344444444444 344445566655443 1 12
Q ss_pred ceeEE---eecCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCC------eeeeccC-CCCceEEEEEccCCCEE
Q 001319 485 RKLFN---FEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMG------SRVDYDA-PGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 485 ~~~~~---~~~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~-~~~~v~~~~~s~d~~~l 553 (1101)
.++.. +. ....|.++..... .++.+++.++.+|.++...+.... ....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 21111 22 2234555432221 124578899999999988764221 1221111 22445554444444555
Q ss_pred EEeecCCCCCceEEEEeCCC----C---eeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCC
Q 001319 554 FSCGTSKDGDSFLVEWNESE----G---TIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~----~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 616 (1101)
+..+. +|.+..++... + +-++-+....+..+..+..-+++. .+++.+..|..+..++..
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55553 66776666532 1 112222222233344443334444 788888888888777643
No 413
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.69 E-value=2.1e+02 Score=25.64 Aligned_cols=19 Identities=26% Similarity=0.038 Sum_probs=13.3
Q ss_pred HHHHccCCHHHHHHHHHhh
Q 001319 82 LEALDRQDKAKAVDILVND 100 (1101)
Q Consensus 82 lell~~~~~~~a~~~l~~~ 100 (1101)
-|++..++..||.+++++-
T Consensus 17 ~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 17 KEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHh
Confidence 3455668888888888753
No 414
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=20.47 E-value=1.1e+03 Score=27.63 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecC-------CcCeEEEecccCCCccEEEEecc-C-----C
Q 001319 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH-------EAPVYSICPHHKENIQFIFSTAI-D-----G 518 (1101)
Q Consensus 452 ~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~~l~s~~~-d-----~ 518 (1101)
+.|..|+++|.... .++.+...+.|..++..|+.-..+..+ ...|.+|++.|...+.+++..+. . +
T Consensus 23 g~i~~i~~~p~~~~-~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 23 GFMPGIVFNETEKD-LIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp SCCCEEEECSSSTT-CEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred ceeeEEEECCCCCC-EEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 37999999998644 355566566666666555544443322 23588999988544445444432 1 1
Q ss_pred eEEEEecCCCCeeeec---cCC-------CCceEEEEEccCC-CEEEEee
Q 001319 519 KIKAWLYDTMGSRVDY---DAP-------GHWCTTMLYSADG-SRLFSCG 557 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~---~~~-------~~~v~~~~~s~d~-~~l~~~~ 557 (1101)
...+|.-..+...+.. ... ...+..+++.|.. ..++.+.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2455654443332211 100 1124678888853 4555543
No 415
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.02 E-value=2.3e+02 Score=24.44 Aligned_cols=18 Identities=28% Similarity=0.113 Sum_probs=12.6
Q ss_pred HHHHccCCHHHHHHHHHh
Q 001319 82 LEALDRQDKAKAVDILVN 99 (1101)
Q Consensus 82 lell~~~~~~~a~~~l~~ 99 (1101)
-|++..++..||.+++++
T Consensus 15 ~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 15 KEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 345566788888888875
Done!