Query 001321
Match_columns 1100
No_of_seqs 516 out of 3281
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 1.5E-38 3.2E-43 354.3 53.7 650 23-885 2-707 (893)
2 KOG0271 Notchless-like WD40 re 100.0 3.4E-39 7.3E-44 333.8 27.7 364 71-698 110-479 (480)
3 KOG0319 WD40-repeat-containing 100.0 1.2E-36 2.7E-41 339.5 41.5 468 35-706 62-541 (775)
4 KOG0271 Notchless-like WD40 re 100.0 1.1E-37 2.5E-42 322.5 28.4 362 22-631 97-479 (480)
5 KOG0318 WD40 repeat stress pro 100.0 5.9E-35 1.3E-39 314.1 47.3 516 26-698 49-600 (603)
6 KOG0319 WD40-repeat-containing 100.0 2.9E-34 6.3E-39 320.6 45.6 567 41-883 25-615 (775)
7 KOG1983 Tomosyn and related SN 100.0 1E-34 2.2E-39 360.0 41.3 880 11-1100 11-993 (993)
8 KOG0306 WD40-repeat-containing 100.0 2.4E-33 5.3E-38 312.7 42.5 481 34-701 64-623 (888)
9 KOG0291 WD40-repeat-containing 100.0 4.2E-31 9.2E-36 295.0 48.0 473 31-708 92-620 (893)
10 KOG0318 WD40 repeat stress pro 100.0 4.4E-29 9.5E-34 269.0 49.7 496 36-699 19-559 (603)
11 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-32 3E-37 289.1 22.1 282 73-631 172-458 (459)
12 KOG0306 WD40-repeat-containing 100.0 4.3E-29 9.3E-34 279.0 48.1 586 46-840 33-665 (888)
13 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-31 2.3E-36 282.5 22.4 284 115-698 173-458 (459)
14 KOG1408 WD40 repeat protein [F 100.0 7.2E-30 1.6E-34 282.1 36.6 601 35-901 78-727 (1080)
15 KOG0292 Vesicle coat complex C 100.0 1.7E-28 3.7E-33 277.6 37.9 348 75-658 8-375 (1202)
16 KOG0286 G-protein beta subunit 100.0 1.6E-28 3.4E-33 247.2 32.4 290 70-631 49-343 (343)
17 KOG2106 Uncharacterized conser 100.0 1.7E-26 3.6E-31 247.6 45.7 404 32-698 101-519 (626)
18 KOG0273 Beta-transducin family 100.0 3.1E-28 6.7E-33 259.5 32.2 332 32-633 175-523 (524)
19 KOG0286 G-protein beta subunit 100.0 8.4E-28 1.8E-32 242.1 32.5 214 18-282 39-261 (343)
20 KOG0273 Beta-transducin family 100.0 3E-28 6.5E-33 259.6 30.5 323 72-698 174-521 (524)
21 KOG0296 Angio-associated migra 100.0 2.3E-27 5E-32 245.8 35.3 340 28-633 57-398 (399)
22 KOG0315 G-protein beta subunit 100.0 3.1E-27 6.7E-32 232.6 29.4 185 47-281 10-198 (311)
23 PF08596 Lgl_C: Lethal giant l 100.0 4.8E-28 1.1E-32 273.5 26.9 316 537-907 2-358 (395)
24 KOG0315 G-protein beta subunit 100.0 6.8E-27 1.5E-31 230.2 30.7 297 89-656 11-308 (311)
25 KOG2048 WD40 repeat protein [G 100.0 4.1E-25 8.9E-30 245.8 47.8 519 34-699 24-547 (691)
26 KOG0296 Angio-associated migra 100.0 2.3E-26 4.9E-31 238.5 33.7 339 67-699 55-397 (399)
27 KOG0279 G protein beta subunit 100.0 1.2E-26 2.7E-31 232.5 30.3 204 32-282 12-224 (315)
28 KOG0276 Vesicle coat complex C 100.0 7.9E-26 1.7E-30 247.9 38.9 201 34-282 12-217 (794)
29 KOG0279 G protein beta subunit 100.0 2E-26 4.2E-31 231.1 30.3 290 115-699 13-312 (315)
30 KOG0276 Vesicle coat complex C 100.0 6.5E-26 1.4E-30 248.6 36.3 281 74-628 11-294 (794)
31 KOG0263 Transcription initiati 100.0 3.6E-27 7.9E-32 267.5 24.5 275 75-636 377-652 (707)
32 KOG1539 WD repeat protein [Gen 100.0 9.2E-25 2E-29 247.6 42.7 516 33-705 74-611 (910)
33 KOG1063 RNA polymerase II elon 100.0 1.9E-24 4.1E-29 240.5 42.5 554 27-698 46-697 (764)
34 KOG0263 Transcription initiati 99.9 1.3E-26 2.8E-31 263.1 24.6 323 34-622 377-704 (707)
35 KOG0295 WD40 repeat-containing 99.9 3.8E-26 8.1E-31 236.6 24.7 325 47-632 76-405 (406)
36 KOG0285 Pleiotropic regulator 99.9 6.8E-26 1.5E-30 233.5 24.8 200 32-282 148-350 (460)
37 PLN00181 protein SPA1-RELATED; 99.9 5.3E-25 1.1E-29 278.5 37.0 321 56-632 457-792 (793)
38 KOG0293 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 234.8 24.1 199 33-281 222-426 (519)
39 PLN00181 protein SPA1-RELATED; 99.9 3.7E-24 8E-29 270.8 40.2 198 33-281 481-691 (793)
40 KOG0645 WD40 repeat protein [G 99.9 3.5E-24 7.6E-29 214.1 31.2 203 30-279 9-224 (312)
41 KOG1539 WD repeat protein [Gen 99.9 7.3E-24 1.6E-28 240.4 36.5 456 48-698 173-646 (910)
42 KOG0266 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 255.0 32.6 201 34-282 158-366 (456)
43 KOG0284 Polyadenylation factor 99.9 3.3E-26 7.1E-31 240.1 16.2 284 76-635 96-382 (464)
44 cd00200 WD40 WD40 domain, foun 99.9 6.5E-24 1.4E-28 234.5 35.8 283 72-631 5-289 (289)
45 cd00200 WD40 WD40 domain, foun 99.9 5.4E-24 1.2E-28 235.1 34.2 199 33-281 7-208 (289)
46 KOG0292 Vesicle coat complex C 99.9 1.1E-23 2.5E-28 238.9 34.9 294 117-700 9-321 (1202)
47 KOG0284 Polyadenylation factor 99.9 1.3E-25 2.9E-30 235.5 17.3 198 34-281 95-295 (464)
48 KOG0265 U5 snRNP-specific prot 99.9 6.3E-24 1.4E-28 215.2 27.8 202 28-280 40-246 (338)
49 KOG0285 Pleiotropic regulator 99.9 4.1E-24 8.8E-29 220.4 26.0 288 71-634 146-440 (460)
50 KOG0282 mRNA splicing factor [ 99.9 2.8E-25 6.1E-30 238.3 18.3 202 31-280 210-415 (503)
51 KOG0645 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 208.1 29.8 293 69-633 7-311 (312)
52 KOG0295 WD40 repeat-containing 99.9 2.2E-24 4.8E-29 223.6 22.4 201 32-282 105-324 (406)
53 KOG0266 WD40 repeat-containing 99.9 1.7E-23 3.7E-28 246.1 32.6 291 71-633 154-454 (456)
54 KOG0278 Serine/threonine kinas 99.9 1.6E-24 3.5E-29 213.3 18.3 201 31-281 10-214 (334)
55 KOG0265 U5 snRNP-specific prot 99.9 1E-22 2.3E-27 206.4 29.1 284 115-696 45-334 (338)
56 KOG0282 mRNA splicing factor [ 99.9 2.7E-24 5.8E-29 230.8 17.4 295 65-631 203-503 (503)
57 KOG1063 RNA polymerase II elon 99.9 3.9E-21 8.5E-26 214.3 42.0 594 29-841 8-701 (764)
58 KOG0281 Beta-TrCP (transducin 99.9 3.7E-24 7.9E-29 219.5 15.4 190 36-282 198-390 (499)
59 KOG1408 WD40 repeat protein [F 99.9 9.8E-22 2.1E-26 218.2 35.6 518 34-701 121-714 (1080)
60 KOG0293 WD40 repeat-containing 99.9 2.7E-23 5.8E-28 218.1 20.8 290 113-699 220-512 (519)
61 KOG0313 Microtubule binding pr 99.9 2.2E-22 4.8E-27 209.9 26.6 316 106-699 94-417 (423)
62 KOG0310 Conserved WD40 repeat- 99.9 1.5E-22 3.1E-27 218.1 25.6 283 75-633 25-309 (487)
63 KOG0281 Beta-TrCP (transducin 99.9 3.2E-23 6.9E-28 212.6 15.7 280 75-636 196-480 (499)
64 KOG0316 Conserved WD40 repeat- 99.9 1.4E-21 3E-26 191.3 26.3 201 31-283 13-216 (307)
65 KOG2106 Uncharacterized conser 99.9 4.1E-20 8.8E-25 198.9 37.7 415 35-698 200-624 (626)
66 KOG0268 Sof1-like rRNA process 99.9 6.1E-23 1.3E-27 212.5 15.1 200 28-281 59-260 (433)
67 KOG0772 Uncharacterized conser 99.9 9.4E-22 2E-26 211.9 23.6 308 115-698 165-485 (641)
68 KOG0643 Translation initiation 99.9 7.4E-21 1.6E-25 189.8 28.1 162 70-282 4-179 (327)
69 KOG0299 U3 snoRNP-associated p 99.9 2.8E-21 6.1E-26 206.6 25.9 163 68-280 134-316 (479)
70 KOG0316 Conserved WD40 repeat- 99.9 4.2E-21 9E-26 188.0 24.9 125 497-662 157-284 (307)
71 KOG0313 Microtubule binding pr 99.9 6.2E-21 1.4E-25 199.1 27.5 212 34-282 104-332 (423)
72 KOG0643 Translation initiation 99.9 4E-21 8.6E-26 191.7 23.8 211 29-282 4-222 (327)
73 KOG0772 Uncharacterized conser 99.9 1.4E-21 3.1E-26 210.5 21.9 177 32-280 164-347 (641)
74 KOG0640 mRNA cleavage stimulat 99.9 1.7E-21 3.7E-26 197.5 20.3 209 30-282 107-337 (430)
75 KOG0275 Conserved WD40 repeat- 99.9 2.8E-22 6.2E-27 203.6 13.8 284 480-875 210-506 (508)
76 KOG0278 Serine/threonine kinas 99.9 1.1E-21 2.4E-26 193.4 17.0 285 70-635 8-299 (334)
77 KOG0275 Conserved WD40 repeat- 99.9 1.3E-21 2.7E-26 199.0 16.4 206 29-280 207-423 (508)
78 KOG2048 WD40 repeat protein [G 99.9 9.9E-18 2.2E-22 187.4 45.0 294 75-634 24-320 (691)
79 KOG0305 Anaphase promoting com 99.9 6.5E-20 1.4E-24 206.2 28.0 275 80-635 181-463 (484)
80 KOG1407 WD40 repeat protein [F 99.9 1.3E-19 2.8E-24 180.5 26.8 265 115-658 18-282 (313)
81 KOG0288 WD40 repeat protein Ti 99.9 4.7E-21 1E-25 201.9 17.1 283 114-698 172-459 (459)
82 KOG0647 mRNA export protein (c 99.9 1.8E-19 3.9E-24 183.1 27.1 198 35-282 27-230 (347)
83 KOG0973 Histone transcription 99.9 5.7E-20 1.2E-24 216.3 26.8 180 24-280 4-201 (942)
84 KOG0274 Cdc4 and related F-box 99.9 2.6E-19 5.7E-24 209.6 31.2 192 34-282 207-402 (537)
85 KOG0299 U3 snoRNP-associated p 99.9 1.2E-19 2.5E-24 194.3 25.6 203 28-282 135-358 (479)
86 KOG0640 mRNA cleavage stimulat 99.9 8.4E-20 1.8E-24 185.3 22.2 169 68-280 104-291 (430)
87 KOG0310 Conserved WD40 repeat- 99.8 1.5E-19 3.3E-24 195.0 24.2 199 34-282 25-227 (487)
88 KOG1036 Mitotic spindle checkp 99.8 7.6E-19 1.6E-23 179.6 27.3 194 35-280 13-207 (323)
89 KOG0283 WD40 repeat-containing 99.8 5.5E-20 1.2E-24 211.4 21.3 296 74-636 265-579 (712)
90 KOG0294 WD40 repeat-containing 99.8 3.8E-19 8.3E-24 181.7 25.0 206 21-281 28-238 (362)
91 PTZ00421 coronin; Provisional 99.8 8E-19 1.7E-23 205.6 30.2 206 31-283 71-293 (493)
92 KOG0288 WD40 repeat protein Ti 99.8 2.7E-20 5.8E-25 196.3 15.8 197 33-282 173-373 (459)
93 KOG1446 Histone H3 (Lys4) meth 99.8 8.5E-18 1.9E-22 173.0 33.5 201 34-282 13-219 (311)
94 KOG0973 Histone transcription 99.8 2.7E-19 5.8E-24 210.7 24.8 320 117-700 13-355 (942)
95 KOG0289 mRNA splicing factor [ 99.8 1.1E-18 2.4E-23 185.1 26.7 284 78-632 221-505 (506)
96 KOG1963 WD40 repeat protein [G 99.8 1.4E-17 3.1E-22 192.1 37.7 546 31-707 12-590 (792)
97 KOG1445 Tumor-specific antigen 99.8 6.9E-18 1.5E-22 185.5 33.2 186 491-727 587-777 (1012)
98 KOG0294 WD40 repeat-containing 99.8 3.8E-18 8.3E-23 174.5 29.0 180 49-281 3-198 (362)
99 KOG0283 WD40 repeat-containing 99.8 4.4E-19 9.5E-24 204.1 24.4 249 33-351 265-575 (712)
100 KOG0641 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 162.6 30.3 305 67-633 23-349 (350)
101 KOG0308 Conserved WD40 repeat- 99.8 1.2E-19 2.6E-24 201.2 18.8 294 122-700 29-327 (735)
102 KOG0647 mRNA export protein (c 99.8 9.4E-19 2E-23 177.9 23.5 284 115-621 25-311 (347)
103 KOG0277 Peroxisomal targeting 99.8 7.9E-19 1.7E-23 174.2 22.1 147 494-698 159-307 (311)
104 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-17 3.1E-22 171.4 31.7 284 75-630 13-300 (311)
105 KOG0274 Cdc4 and related F-box 99.8 1.6E-18 3.5E-23 203.0 28.2 276 75-638 207-487 (537)
106 PTZ00420 coronin; Provisional 99.8 2.2E-18 4.7E-23 202.5 29.2 205 31-282 70-295 (568)
107 PTZ00420 coronin; Provisional 99.8 9.4E-18 2E-22 197.1 34.5 178 53-281 50-249 (568)
108 PTZ00421 coronin; Provisional 99.8 2.1E-17 4.5E-22 193.7 37.4 175 488-705 25-203 (493)
109 KOG0646 WD40 repeat protein [G 99.8 7.1E-19 1.5E-23 188.8 22.7 139 497-659 190-330 (476)
110 KOG2096 WD40 repeat protein [G 99.8 2.5E-18 5.4E-23 175.5 25.1 170 71-279 81-257 (420)
111 KOG2055 WD40 repeat protein [G 99.8 1.7E-18 3.6E-23 185.3 23.7 197 35-282 213-419 (514)
112 KOG0305 Anaphase promoting com 99.8 3E-18 6.6E-23 192.9 26.9 190 40-282 182-378 (484)
113 KOG0277 Peroxisomal targeting 99.8 1.5E-18 3.2E-23 172.3 21.4 196 39-282 12-223 (311)
114 KOG0300 WD40 repeat-containing 99.8 5E-18 1.1E-22 172.6 23.8 212 20-282 132-388 (481)
115 KOG4283 Transcription-coupled 99.8 6.2E-18 1.3E-22 170.8 23.7 225 24-283 32-279 (397)
116 KOG0301 Phospholipase A2-activ 99.8 3.4E-18 7.4E-23 191.3 24.0 193 31-280 10-208 (745)
117 KOG0308 Conserved WD40 repeat- 99.8 2.8E-18 6.1E-23 190.4 22.7 204 40-282 29-245 (735)
118 KOG1036 Mitotic spindle checkp 99.8 9.5E-18 2.1E-22 171.7 24.8 158 71-282 8-165 (323)
119 KOG1407 WD40 repeat protein [F 99.8 2.5E-17 5.4E-22 164.4 27.1 274 72-624 16-293 (313)
120 KOG0300 WD40 repeat-containing 99.8 1.2E-17 2.5E-22 170.0 24.1 329 71-700 143-476 (481)
121 KOG2055 WD40 repeat protein [G 99.8 7.1E-18 1.5E-22 180.5 22.5 158 490-698 351-510 (514)
122 KOG0301 Phospholipase A2-activ 99.8 1.3E-17 2.8E-22 186.7 25.2 277 71-635 9-290 (745)
123 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.9E-16 4.2E-21 177.5 34.5 185 47-282 1-189 (300)
124 KOG0641 WD40 repeat protein [G 99.8 5.9E-16 1.3E-20 150.7 31.1 206 34-282 31-263 (350)
125 KOG0646 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 178.0 22.8 190 48-280 51-247 (476)
126 KOG2445 Nuclear pore complex c 99.8 5.6E-17 1.2E-21 165.5 24.3 180 115-336 11-193 (361)
127 KOG0289 mRNA splicing factor [ 99.8 3.3E-17 7.2E-22 174.0 23.4 199 32-278 258-460 (506)
128 KOG1274 WD40 repeat protein [G 99.8 9.7E-17 2.1E-21 185.2 28.8 213 26-282 4-220 (933)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9.9E-16 2.1E-20 171.8 34.8 141 89-280 2-145 (300)
130 KOG1332 Vesicle coat complex C 99.8 3.2E-17 6.9E-22 162.1 19.3 270 115-633 9-286 (299)
131 KOG1332 Vesicle coat complex C 99.8 2.7E-17 5.9E-22 162.5 18.0 207 29-280 5-241 (299)
132 KOG0269 WD40 repeat-containing 99.8 2.7E-17 5.8E-22 186.2 19.1 148 495-699 189-339 (839)
133 KOG0650 WD40 repeat nucleolar 99.7 1.1E-16 2.4E-21 176.1 22.9 150 490-697 573-732 (733)
134 KOG0268 Sof1-like rRNA process 99.7 1.6E-17 3.5E-22 172.6 15.0 146 497-702 202-347 (433)
135 KOG0321 WD40 repeat-containing 99.7 2.6E-16 5.7E-21 174.6 24.6 232 28-281 42-302 (720)
136 KOG2096 WD40 repeat protein [G 99.7 4.9E-16 1.1E-20 158.9 24.1 198 29-280 80-308 (420)
137 KOG1445 Tumor-specific antigen 99.7 4.8E-15 1E-19 163.4 32.8 127 112-283 74-203 (1012)
138 KOG0639 Transducin-like enhanc 99.7 9.9E-17 2.2E-21 172.5 17.8 291 110-698 412-702 (705)
139 KOG1274 WD40 repeat protein [G 99.7 1.9E-15 4.2E-20 174.7 29.0 161 70-282 7-170 (933)
140 KOG0639 Transducin-like enhanc 99.7 3.2E-16 6.9E-21 168.7 20.4 284 70-632 413-703 (705)
141 KOG1538 Uncharacterized conser 99.7 1.1E-14 2.4E-19 161.5 32.7 193 37-281 14-212 (1081)
142 KOG1273 WD40 repeat protein [G 99.7 1.5E-15 3.4E-20 155.2 23.5 198 38-280 26-226 (405)
143 KOG4328 WD40 protein [Function 99.7 1.3E-15 2.8E-20 163.3 23.6 199 34-280 185-399 (498)
144 KOG0269 WD40 repeat-containing 99.7 2E-16 4.4E-21 179.2 17.9 203 30-282 34-252 (839)
145 KOG1538 Uncharacterized conser 99.7 3.7E-16 7.9E-21 172.9 18.9 147 78-279 14-161 (1081)
146 KOG0264 Nucleosome remodeling 99.7 3.6E-16 7.9E-21 168.2 18.2 216 33-281 175-405 (422)
147 KOG1188 WD40 repeat protein [G 99.7 8.5E-16 1.8E-20 159.2 19.6 190 48-283 41-245 (376)
148 KOG1273 WD40 repeat protein [G 99.7 8.5E-15 1.9E-19 149.8 25.5 157 490-698 160-320 (405)
149 KOG4283 Transcription-coupled 99.7 8E-15 1.7E-19 148.6 24.1 161 71-280 38-219 (397)
150 KOG0321 WD40 repeat-containing 99.7 2.3E-15 4.9E-20 167.3 21.3 161 491-700 225-391 (720)
151 KOG0267 Microtubule severing p 99.7 5.8E-17 1.2E-21 182.0 8.8 195 30-273 65-261 (825)
152 KOG0650 WD40 repeat nucleolar 99.7 1.1E-14 2.3E-19 160.6 25.5 206 24-280 388-637 (733)
153 KOG1034 Transcriptional repres 99.7 1E-14 2.2E-19 150.4 22.7 167 71-282 33-213 (385)
154 KOG0264 Nucleosome remodeling 99.7 7.9E-15 1.7E-19 158.0 22.2 270 21-352 110-404 (422)
155 COG2319 FOG: WD40 repeat [Gene 99.7 2.4E-12 5.1E-17 150.6 44.9 202 30-282 60-273 (466)
156 KOG2445 Nuclear pore complex c 99.6 8.7E-14 1.9E-18 142.4 27.2 291 30-367 8-333 (361)
157 KOG0270 WD40 repeat-containing 99.6 9.7E-15 2.1E-19 156.3 19.9 201 34-282 172-406 (463)
158 KOG4378 Nuclear protein COP1 [ 99.6 2.1E-14 4.5E-19 154.8 21.6 124 497-658 179-303 (673)
159 KOG0322 G-protein beta subunit 99.6 2.6E-14 5.6E-19 143.2 18.9 77 70-148 8-86 (323)
160 KOG0267 Microtubule severing p 99.6 5.5E-16 1.2E-20 174.3 7.5 208 26-283 18-229 (825)
161 KOG0302 Ribosome Assembly prot 99.6 1.5E-14 3.3E-19 151.5 16.8 218 32-276 208-435 (440)
162 KOG1240 Protein kinase contain 99.6 1.6E-13 3.5E-18 162.7 26.9 183 62-282 1034-1227(1431)
163 KOG1009 Chromatin assembly com 99.6 3.8E-13 8.2E-18 142.7 26.1 166 76-280 13-195 (434)
164 KOG1963 WD40 repeat protein [G 99.6 2.5E-12 5.4E-17 149.3 34.4 206 30-283 52-325 (792)
165 KOG2919 Guanine nucleotide-bin 99.6 3.5E-13 7.6E-18 138.6 23.5 200 40-281 54-282 (406)
166 KOG4227 WD40 repeat protein [G 99.5 4.9E-13 1.1E-17 140.1 21.5 208 32-279 53-273 (609)
167 COG2319 FOG: WD40 repeat [Gene 99.5 7.7E-11 1.7E-15 137.7 42.6 354 47-704 39-404 (466)
168 KOG0302 Ribosome Assembly prot 99.5 2.5E-13 5.4E-18 142.5 17.7 209 26-282 145-380 (440)
169 KOG1912 WD40 repeat protein [G 99.5 2.4E-12 5.1E-17 146.0 26.6 216 34-281 54-305 (1062)
170 KOG1517 Guanine nucleotide bin 99.5 1.3E-12 2.8E-17 152.7 25.0 166 78-281 1066-1240(1387)
171 PRK11028 6-phosphogluconolacto 99.5 4E-11 8.6E-16 136.6 37.1 141 93-281 7-157 (330)
172 KOG4328 WD40 protein [Function 99.5 1.5E-12 3.2E-17 140.2 22.9 154 495-700 335-495 (498)
173 KOG1517 Guanine nucleotide bin 99.5 3E-12 6.5E-17 149.8 26.8 154 493-700 1219-1381(1387)
174 KOG0642 Cell-cycle nuclear pro 99.5 1.4E-13 3.1E-18 151.7 15.2 128 71-212 289-430 (577)
175 KOG0307 Vesicle coat complex C 99.5 4.9E-14 1.1E-18 167.4 11.6 212 29-286 58-290 (1049)
176 KOG0307 Vesicle coat complex C 99.5 8.2E-14 1.8E-18 165.5 13.5 173 38-282 9-194 (1049)
177 KOG4227 WD40 repeat protein [G 99.5 2.4E-12 5.1E-17 135.1 22.3 165 71-282 51-227 (609)
178 KOG1009 Chromatin assembly com 99.5 6.7E-12 1.4E-16 133.4 25.3 170 26-216 6-203 (434)
179 KOG1587 Cytoplasmic dynein int 99.5 2.6E-12 5.6E-17 149.7 24.5 271 177-634 243-517 (555)
180 KOG0322 G-protein beta subunit 99.5 8.6E-13 1.9E-17 132.4 17.2 153 497-698 167-321 (323)
181 KOG0270 WD40 repeat-containing 99.5 5.2E-13 1.1E-17 143.3 16.7 211 27-282 235-451 (463)
182 KOG1034 Transcriptional repres 99.5 3.5E-12 7.5E-17 131.9 22.0 232 23-279 26-278 (385)
183 KOG4378 Nuclear protein COP1 [ 99.5 5.9E-13 1.3E-17 143.7 15.6 201 37-285 81-285 (673)
184 KOG2919 Guanine nucleotide-bin 99.5 7.9E-12 1.7E-16 128.9 22.5 118 79-211 52-191 (406)
185 KOG0771 Prolactin regulatory e 99.5 9.7E-13 2.1E-17 141.0 16.0 199 39-281 148-355 (398)
186 KOG0644 Uncharacterized conser 99.5 2.2E-13 4.8E-18 155.3 11.7 159 72-279 186-345 (1113)
187 PRK11028 6-phosphogluconolacto 99.5 6.5E-11 1.4E-15 134.8 31.6 189 51-280 6-205 (330)
188 KOG1007 WD repeat protein TSSC 99.4 3.4E-12 7.3E-17 129.6 17.6 223 36-280 124-361 (370)
189 KOG0303 Actin-binding protein 99.4 9.9E-12 2.1E-16 131.3 21.7 164 37-283 29-206 (472)
190 KOG1523 Actin-related protein 99.4 1.5E-11 3.2E-16 127.1 21.2 222 34-282 9-238 (361)
191 KOG0642 Cell-cycle nuclear pro 99.4 1.9E-12 4.1E-17 143.0 15.5 224 24-281 284-562 (577)
192 KOG1007 WD repeat protein TSSC 99.4 3.4E-11 7.4E-16 122.4 22.9 151 492-698 181-359 (370)
193 KOG1587 Cytoplasmic dynein int 99.4 7.9E-11 1.7E-15 137.4 25.9 193 57-280 222-428 (555)
194 KOG0644 Uncharacterized conser 99.4 1.6E-12 3.5E-17 148.3 11.4 157 32-207 187-345 (1113)
195 PRK01742 tolB translocation pr 99.4 5E-11 1.1E-15 140.2 24.2 175 56-282 183-363 (429)
196 KOG1310 WD40 repeat protein [G 99.4 7.4E-11 1.6E-15 129.3 23.3 238 30-283 45-306 (758)
197 KOG2110 Uncharacterized conser 99.4 1E-09 2.2E-14 115.9 30.6 143 484-638 174-338 (391)
198 KOG0303 Actin-binding protein 99.4 3E-11 6.5E-16 127.8 18.8 210 24-282 70-296 (472)
199 KOG0290 Conserved WD40 repeat- 99.4 8E-11 1.7E-15 119.9 20.7 208 28-282 89-320 (364)
200 KOG1524 WD40 repeat-containing 99.4 2.4E-10 5.2E-15 125.0 25.6 177 47-276 75-251 (737)
201 KOG4497 Uncharacterized conser 99.4 1.7E-10 3.8E-15 119.2 23.2 139 40-199 13-154 (447)
202 KOG0649 WD40 repeat protein [G 99.3 2.8E-10 6E-15 113.2 22.9 167 37-284 12-190 (325)
203 KOG0771 Prolactin regulatory e 99.3 8.8E-12 1.9E-16 133.7 13.0 161 488-662 149-338 (398)
204 KOG1188 WD40 repeat protein [G 99.3 1.3E-10 2.8E-15 121.2 20.6 289 496-898 41-359 (376)
205 PRK01742 tolB translocation pr 99.3 1.1E-10 2.5E-15 137.2 22.6 194 33-280 201-401 (429)
206 PF04762 IKI3: IKI3 family; I 99.3 1E-06 2.3E-11 111.2 58.7 474 35-635 21-566 (928)
207 KOG0974 WD-repeat protein WDR6 99.3 1.7E-07 3.6E-12 111.7 46.2 192 41-282 93-290 (967)
208 KOG0290 Conserved WD40 repeat- 99.3 2.3E-09 5E-14 109.4 26.5 167 74-282 42-229 (364)
209 KOG2111 Uncharacterized conser 99.3 1E-08 2.2E-13 106.5 31.6 130 488-629 186-318 (346)
210 KOG1240 Protein kinase contain 99.3 1E-09 2.3E-14 131.1 26.1 207 32-283 1045-1276(1431)
211 KOG2394 WD40 protein DMR-N9 [G 99.3 4.7E-10 1E-14 123.2 21.4 87 490-612 297-383 (636)
212 KOG2394 WD40 protein DMR-N9 [G 99.3 1.6E-10 3.4E-15 126.9 17.3 142 537-706 291-458 (636)
213 KOG2139 WD40 repeat protein [G 99.2 2.9E-09 6.3E-14 111.9 25.2 166 77-280 99-268 (445)
214 KOG0649 WD40 repeat protein [G 99.2 6E-10 1.3E-14 110.8 18.6 175 490-705 17-191 (325)
215 KOG4497 Uncharacterized conser 99.2 1.2E-09 2.6E-14 113.1 20.3 140 81-271 13-154 (447)
216 KOG2321 WD40 repeat protein [G 99.2 1.8E-09 3.9E-14 119.5 22.9 282 27-381 43-326 (703)
217 KOG2110 Uncharacterized conser 99.2 2.5E-09 5.3E-14 113.1 22.9 193 38-282 49-250 (391)
218 PRK03629 tolB translocation pr 99.2 2.2E-09 4.8E-14 126.0 25.3 197 34-280 197-406 (429)
219 PF02239 Cytochrom_D1: Cytochr 99.2 5E-08 1.1E-12 111.2 35.4 193 47-282 5-204 (369)
220 KOG1334 WD40 repeat protein [G 99.2 3.7E-10 7.9E-15 122.8 15.3 219 32-280 139-366 (559)
221 PRK05137 tolB translocation pr 99.2 1.4E-08 3.1E-13 119.9 29.5 177 57-282 182-368 (435)
222 PRK04922 tolB translocation pr 99.2 3.3E-09 7.1E-14 125.1 23.9 198 34-281 202-412 (433)
223 PRK03629 tolB translocation pr 99.1 1.6E-08 3.5E-13 118.7 29.0 177 57-282 179-365 (429)
224 PRK05137 tolB translocation pr 99.1 6.3E-09 1.4E-13 122.9 25.3 200 33-282 199-414 (435)
225 PRK02889 tolB translocation pr 99.1 1.1E-08 2.4E-13 120.2 26.6 177 57-282 176-362 (427)
226 KOG1272 WD40-repeat-containing 99.1 6.3E-10 1.4E-14 120.3 13.2 127 493-661 261-392 (545)
227 KOG1524 WD40 repeat-containing 99.1 9.6E-10 2.1E-14 120.4 13.1 181 34-278 103-284 (737)
228 PRK02889 tolB translocation pr 99.1 9.7E-09 2.1E-13 120.7 22.7 190 33-272 193-392 (427)
229 KOG1523 Actin-related protein 99.1 7E-08 1.5E-12 100.4 25.5 163 75-279 9-175 (361)
230 KOG2111 Uncharacterized conser 99.0 2.4E-08 5.1E-13 103.8 20.8 178 57-282 75-258 (346)
231 KOG1334 WD40 repeat protein [G 99.0 2.5E-09 5.4E-14 116.4 12.9 127 71-212 137-267 (559)
232 KOG2041 WD40 repeat protein [G 99.0 1.5E-06 3.2E-11 98.7 35.0 212 32-281 9-248 (1189)
233 KOG1272 WD40-repeat-containing 99.0 1.2E-09 2.6E-14 118.2 10.1 195 37-283 131-326 (545)
234 PF10282 Lactonase: Lactonase, 99.0 8.4E-06 1.8E-10 93.1 42.5 149 98-281 13-175 (345)
235 PF02239 Cytochrom_D1: Cytochr 99.0 6.6E-07 1.4E-11 102.1 32.4 106 91-216 9-116 (369)
236 PRK04922 tolB translocation pr 99.0 5.6E-08 1.2E-12 114.7 24.4 177 57-282 184-370 (433)
237 KOG2139 WD40 repeat protein [G 99.0 2.1E-08 4.5E-13 105.6 17.6 194 37-280 100-309 (445)
238 PF08662 eIF2A: Eukaryotic tra 99.0 2.1E-08 4.4E-13 103.8 17.0 110 35-147 59-179 (194)
239 KOG3881 Uncharacterized conser 99.0 3.2E-08 6.8E-13 105.6 18.3 125 495-657 216-340 (412)
240 TIGR02800 propeller_TolB tol-p 99.0 2E-07 4.2E-12 110.1 27.4 177 57-282 170-356 (417)
241 PF08662 eIF2A: Eukaryotic tra 98.9 9.9E-08 2.1E-12 98.8 21.5 152 38-212 8-183 (194)
242 TIGR02800 propeller_TolB tol-p 98.9 1E-07 2.2E-12 112.5 23.5 188 35-272 189-386 (417)
243 KOG2321 WD40 repeat protein [G 98.9 2.7E-08 5.8E-13 110.5 16.8 200 35-282 133-345 (703)
244 KOG2315 Predicted translation 98.9 2.1E-06 4.4E-11 96.1 30.8 345 57-568 11-392 (566)
245 COG5354 Uncharacterized protei 98.9 1.6E-06 3.4E-11 95.8 29.4 161 34-213 31-215 (561)
246 KOG2041 WD40 repeat protein [G 98.9 5.9E-06 1.3E-10 94.1 34.0 132 116-280 13-145 (1189)
247 KOG1912 WD40 repeat protein [G 98.9 7.5E-07 1.6E-11 102.3 27.1 159 75-281 14-187 (1062)
248 PRK04792 tolB translocation pr 98.9 2.6E-07 5.6E-12 109.0 24.0 162 35-214 217-388 (448)
249 PRK00178 tolB translocation pr 98.9 3.6E-07 7.7E-12 108.2 24.9 163 34-214 197-369 (430)
250 PRK00178 tolB translocation pr 98.9 6.4E-07 1.4E-11 106.0 27.0 176 58-282 180-365 (430)
251 KOG1310 WD40 repeat protein [G 98.8 3.4E-08 7.4E-13 108.8 14.0 176 71-280 45-231 (758)
252 PRK01029 tolB translocation pr 98.8 5.3E-07 1.1E-11 105.6 24.3 198 36-282 185-405 (428)
253 KOG3881 Uncharacterized conser 98.8 1.9E-07 4.1E-12 99.8 18.3 195 37-282 107-322 (412)
254 PF04762 IKI3: IKI3 family; I 98.8 0.00059 1.3E-08 86.7 51.8 70 177-279 76-149 (928)
255 PRK04792 tolB translocation pr 98.7 8.1E-07 1.7E-11 104.9 22.8 176 58-282 199-384 (448)
256 KOG1409 Uncharacterized conser 98.7 3.3E-07 7.1E-12 96.3 16.7 204 29-282 62-272 (404)
257 KOG0974 WD-repeat protein WDR6 98.7 3.8E-06 8.3E-11 100.4 27.4 148 82-281 93-247 (967)
258 KOG2314 Translation initiation 98.7 1.2E-05 2.6E-10 89.6 29.0 108 37-147 212-334 (698)
259 PF10282 Lactonase: Lactonase, 98.7 4.2E-05 9.1E-10 87.4 34.8 212 32-280 33-275 (345)
260 KOG1409 Uncharacterized conser 98.6 1.8E-06 4E-11 90.8 17.4 137 488-634 202-395 (404)
261 COG4946 Uncharacterized protei 98.6 0.0001 2.2E-09 80.8 31.0 150 46-216 331-485 (668)
262 TIGR03300 assembly_YfgL outer 98.6 0.00017 3.7E-09 83.7 34.8 194 47-282 65-261 (377)
263 KOG1354 Serine/threonine prote 98.6 8.1E-07 1.8E-11 93.2 13.3 222 35-282 25-303 (433)
264 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00052 1.1E-08 76.8 36.2 121 494-641 205-338 (352)
265 TIGR03300 assembly_YfgL outer 98.5 0.00014 3E-09 84.6 32.6 146 88-282 65-210 (377)
266 TIGR02658 TTQ_MADH_Hv methylam 98.5 4.3E-05 9.2E-10 85.4 26.2 204 43-285 53-335 (352)
267 PLN02919 haloacid dehalogenase 98.5 0.00025 5.3E-09 91.8 36.8 231 27-282 493-772 (1057)
268 KOG3914 WD repeat protein WDR4 98.5 1.2E-06 2.6E-11 94.4 13.0 161 37-216 64-231 (390)
269 COG2706 3-carboxymuconate cycl 98.5 5.7E-05 1.2E-09 81.1 25.3 225 17-280 64-321 (346)
270 KOG4547 WD40 repeat-containing 98.5 9.6E-06 2.1E-10 91.7 19.6 186 44-281 2-221 (541)
271 KOG4547 WD40 repeat-containing 98.4 2.3E-05 5E-10 88.7 22.2 129 492-659 67-195 (541)
272 COG2706 3-carboxymuconate cycl 98.4 0.00056 1.2E-08 73.6 31.3 215 28-281 32-275 (346)
273 KOG3914 WD repeat protein WDR4 98.4 3E-06 6.4E-11 91.5 14.1 160 490-708 69-231 (390)
274 PLN02919 haloacid dehalogenase 98.4 4.3E-05 9.3E-10 98.7 27.1 227 37-283 625-891 (1057)
275 KOG1064 RAVE (regulator of V-A 98.4 1.3E-06 2.9E-11 108.6 11.6 190 37-286 2210-2404(2439)
276 PRK04043 tolB translocation pr 98.3 8.5E-05 1.8E-09 86.6 24.7 158 37-214 189-363 (419)
277 KOG2066 Vacuolar assembly/sort 98.3 8.2E-06 1.8E-10 95.1 15.6 190 35-280 39-233 (846)
278 KOG1064 RAVE (regulator of V-A 98.3 1.6E-06 3.4E-11 108.0 10.2 150 489-700 2214-2366(2439)
279 COG5354 Uncharacterized protei 98.3 0.00027 5.9E-09 78.6 25.3 90 57-148 11-117 (561)
280 COG5170 CDC55 Serine/threonine 98.3 6.7E-06 1.5E-10 85.1 11.8 219 35-283 26-312 (460)
281 PF15492 Nbas_N: Neuroblastoma 98.3 0.00012 2.7E-09 76.3 21.1 99 39-137 47-167 (282)
282 PRK04043 tolB translocation pr 98.3 0.00043 9.4E-09 80.7 28.2 139 57-214 169-315 (419)
283 PRK01029 tolB translocation pr 98.2 7.8E-05 1.7E-09 87.5 21.5 164 35-216 230-411 (428)
284 KOG1354 Serine/threonine prote 98.2 0.00013 2.7E-09 77.2 19.9 93 116-212 24-120 (433)
285 PF11768 DUF3312: Protein of u 98.2 0.01 2.2E-07 68.4 36.5 99 507-640 238-336 (545)
286 KOG4532 WD40-like repeat conta 98.2 4.7E-05 1E-09 77.8 16.0 152 498-702 131-284 (344)
287 COG4946 Uncharacterized protei 98.2 0.019 4E-07 63.7 46.8 123 534-707 357-484 (668)
288 KOG2114 Vacuolar assembly/sort 98.1 0.0001 2.3E-09 86.7 18.6 156 41-211 29-204 (933)
289 KOG0280 Uncharacterized conser 98.1 5.1E-05 1.1E-09 78.6 14.3 155 38-210 124-286 (339)
290 PF00400 WD40: WD domain, G-be 98.1 1E-05 2.2E-10 59.5 6.8 37 595-631 3-39 (39)
291 KOG4714 Nucleoporin [Nuclear s 98.1 3.8E-05 8.3E-10 78.2 12.5 213 38-278 92-316 (319)
292 KOG2314 Translation initiation 98.1 0.00099 2.1E-08 74.8 24.4 112 78-209 212-335 (698)
293 KOG4714 Nucleoporin [Nuclear s 98.1 1.1E-05 2.3E-10 82.0 8.3 128 538-698 181-316 (319)
294 KOG2315 Predicted translation 98.1 0.0003 6.5E-09 79.3 19.9 195 34-282 164-392 (566)
295 KOG3621 WD40 repeat-containing 98.0 0.00012 2.5E-09 84.7 16.9 145 483-657 33-179 (726)
296 KOG3617 WD40 and TPR repeat-co 98.0 0.00081 1.8E-08 78.7 22.7 73 35-107 59-132 (1416)
297 PRK11138 outer membrane biogen 98.0 0.01 2.2E-07 69.3 32.8 108 88-216 69-186 (394)
298 KOG4190 Uncharacterized conser 98.0 1.4E-05 3E-10 88.4 7.7 210 26-282 726-950 (1034)
299 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.019 4.2E-07 59.0 28.8 106 89-214 24-129 (354)
300 KOG0280 Uncharacterized conser 98.0 0.001 2.2E-08 69.3 20.0 192 48-282 25-243 (339)
301 KOG0860 Synaptobrevin/VAMP-lik 97.9 6.9E-06 1.5E-10 73.3 3.4 50 1046-1099 41-90 (116)
302 PRK11138 outer membrane biogen 97.9 0.021 4.5E-07 66.8 33.4 172 22-214 40-229 (394)
303 PF11768 DUF3312: Protein of u 97.9 0.0013 2.9E-08 75.4 22.1 160 111-317 199-367 (545)
304 PF00957 Synaptobrevin: Synapt 97.9 1.5E-05 3.3E-10 70.8 5.3 49 1045-1093 14-62 (89)
305 KOG4532 WD40-like repeat conta 97.9 0.00081 1.8E-08 69.0 17.4 195 50-280 131-331 (344)
306 KOG3617 WD40 and TPR repeat-co 97.8 0.0006 1.3E-08 79.7 17.5 111 37-148 17-132 (1416)
307 KOG2695 WD40 repeat protein [G 97.8 5.5E-05 1.2E-09 80.0 8.3 154 501-708 230-384 (425)
308 KOG3621 WD40 repeat-containing 97.8 0.00016 3.5E-09 83.6 12.6 160 34-211 32-200 (726)
309 PF15492 Nbas_N: Neuroblastoma 97.8 0.011 2.3E-07 62.2 24.5 37 602-638 228-264 (282)
310 KOG1645 RING-finger-containing 97.8 0.0021 4.6E-08 69.7 19.7 77 177-284 194-270 (463)
311 KOG1645 RING-finger-containing 97.8 0.0016 3.5E-08 70.6 18.6 84 71-154 188-273 (463)
312 PF08450 SGL: SMP-30/Gluconola 97.7 0.027 5.9E-07 61.0 28.4 189 33-269 38-244 (246)
313 PF13360 PQQ_2: PQQ-like domai 97.7 0.0045 9.8E-08 66.6 22.1 192 46-283 35-233 (238)
314 PF03178 CPSF_A: CPSF A subuni 97.7 0.0043 9.3E-08 70.2 22.8 144 47-209 42-203 (321)
315 PF08450 SGL: SMP-30/Gluconola 97.7 0.048 1E-06 59.0 30.1 192 39-280 3-213 (246)
316 KOG2695 WD40 repeat protein [G 97.7 0.00014 3.1E-09 76.9 9.5 166 34-216 211-384 (425)
317 KOG1897 Damage-specific DNA bi 97.7 0.27 5.8E-06 60.0 45.0 139 57-211 470-616 (1096)
318 PF00400 WD40: WD domain, G-be 97.7 9.3E-05 2E-09 54.3 5.5 34 531-564 6-39 (39)
319 KOG1920 IkappaB kinase complex 97.7 0.018 3.9E-07 71.1 27.3 214 35-281 18-275 (1265)
320 KOG4190 Uncharacterized conser 97.6 0.00018 3.8E-09 79.9 8.9 178 480-708 732-914 (1034)
321 PF08596 Lgl_C: Lethal giant l 97.5 0.017 3.7E-07 66.3 23.7 205 37-282 3-292 (395)
322 PF07433 DUF1513: Protein of u 97.5 0.03 6.6E-07 60.7 23.8 220 34-284 3-251 (305)
323 COG5170 CDC55 Serine/threonine 97.5 0.0065 1.4E-07 63.6 17.8 97 117-213 26-122 (460)
324 KOG1832 HIV-1 Vpr-binding prot 97.5 7.2E-05 1.6E-09 87.5 3.9 169 24-216 1091-1263(1516)
325 KOG0882 Cyclophilin-related pe 97.5 0.0046 1E-07 68.0 17.2 195 494-698 155-370 (558)
326 KOG0309 Conserved WD40 repeat- 97.4 0.00055 1.2E-08 79.1 10.0 124 26-149 105-234 (1081)
327 KOG1920 IkappaB kinase complex 97.4 0.021 4.5E-07 70.6 23.6 201 36-283 69-325 (1265)
328 KOG0882 Cyclophilin-related pe 97.3 0.0013 2.8E-08 72.2 10.8 215 32-286 6-237 (558)
329 KOG1897 Damage-specific DNA bi 97.3 0.76 1.7E-05 56.3 53.5 117 538-698 489-611 (1096)
330 PF06977 SdiA-regulated: SdiA- 97.3 0.033 7.1E-07 59.5 21.3 174 32-215 18-207 (248)
331 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.3 6.5E-06 50.6 27.0 64 189-284 22-85 (354)
332 KOG2079 Vacuolar assembly/sort 97.3 0.0029 6.3E-08 76.8 13.8 113 538-698 89-201 (1206)
333 KOG0309 Conserved WD40 repeat- 97.2 0.0013 2.9E-08 76.0 9.9 200 34-282 23-234 (1081)
334 KOG2066 Vacuolar assembly/sort 97.2 0.011 2.3E-07 70.0 17.3 146 44-208 80-233 (846)
335 PF13360 PQQ_2: PQQ-like domai 97.2 0.043 9.3E-07 58.9 21.3 146 55-216 1-148 (238)
336 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.017 3.6E-07 52.5 14.5 100 38-142 2-109 (111)
337 PF07433 DUF1513: Protein of u 97.1 0.055 1.2E-06 58.7 20.5 161 41-215 56-254 (305)
338 KOG4640 Anaphase-promoting com 97.1 0.002 4.4E-08 73.9 9.6 93 537-657 21-114 (665)
339 PRK02888 nitrous-oxide reducta 97.1 0.044 9.6E-07 64.9 20.7 161 41-209 198-405 (635)
340 KOG2114 Vacuolar assembly/sort 97.0 0.086 1.9E-06 63.1 22.3 136 490-660 30-183 (933)
341 PF00780 CNH: CNH domain; Int 97.0 0.024 5.2E-07 62.6 17.6 150 44-216 4-173 (275)
342 PF04841 Vps16_N: Vps16, N-ter 97.0 0.18 3.9E-06 58.8 24.9 67 41-109 34-112 (410)
343 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0023 4.9E-08 48.7 5.9 42 26-67 2-43 (47)
344 COG0823 TolB Periplasmic compo 96.8 0.022 4.8E-07 66.1 15.1 156 38-211 195-361 (425)
345 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.2 4.3E-06 57.5 22.7 101 44-145 1-129 (353)
346 KOG2079 Vacuolar assembly/sort 96.7 0.039 8.5E-07 67.5 16.5 101 46-148 98-204 (1206)
347 PF00780 CNH: CNH domain; Int 96.7 0.33 7.1E-06 53.5 23.3 161 492-704 4-169 (275)
348 KOG1275 PAB-dependent poly(A) 96.7 0.035 7.6E-07 66.5 15.6 180 47-278 147-340 (1118)
349 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.11 2.4E-06 47.2 15.4 105 539-696 2-110 (111)
350 KOG4640 Anaphase-promoting com 96.7 0.0074 1.6E-07 69.5 9.6 93 34-126 19-114 (665)
351 PF10168 Nup88: Nuclear pore c 96.6 1.6 3.4E-05 54.2 30.1 33 249-282 146-181 (717)
352 smart00320 WD40 WD40 repeats. 96.5 0.0081 1.8E-07 42.5 5.9 37 595-631 4-40 (40)
353 PF08553 VID27: VID27 cytoplas 96.4 0.091 2E-06 64.7 17.2 140 95-280 501-647 (794)
354 PF06977 SdiA-regulated: SdiA- 96.3 0.52 1.1E-05 50.5 20.5 175 75-279 20-200 (248)
355 PF14727 PHTB1_N: PTHB1 N-term 96.3 3.2 6.8E-05 48.0 31.9 296 493-893 35-366 (418)
356 KOG1008 Uncharacterized conser 96.3 0.0025 5.5E-08 73.0 2.8 199 38-282 59-277 (783)
357 KOG1275 PAB-dependent poly(A) 96.2 0.042 9.1E-07 65.9 12.6 150 38-206 180-340 (1118)
358 COG0823 TolB Periplasmic compo 96.2 0.13 2.8E-06 59.8 16.7 139 58-214 174-320 (425)
359 PF03178 CPSF_A: CPSF A subuni 96.1 0.34 7.3E-06 54.8 19.4 121 23-148 76-203 (321)
360 COG3204 Uncharacterized protei 96.1 0.73 1.6E-05 49.2 19.7 180 74-281 83-264 (316)
361 PF04053 Coatomer_WDAD: Coatom 96.0 0.3 6.5E-06 57.1 18.2 58 90-149 118-175 (443)
362 PF08553 VID27: VID27 cytoplas 96.0 0.1 2.3E-06 64.2 14.7 73 31-105 573-646 (794)
363 KOG4499 Ca2+-binding protein R 95.9 0.58 1.2E-05 48.0 17.2 110 121-269 161-273 (310)
364 PRK13616 lipoprotein LpqB; Pro 95.8 0.37 8E-06 58.6 18.3 153 36-207 350-524 (591)
365 KOG0859 Synaptobrevin/VAMP-lik 95.7 0.0071 1.5E-07 59.3 2.6 65 1028-1099 122-186 (217)
366 COG3391 Uncharacterized conser 95.6 2.1 4.5E-05 49.6 23.3 203 36-282 74-285 (381)
367 PF06433 Me-amine-dh_H: Methyl 95.5 2.1 4.6E-05 47.3 21.1 204 40-283 99-323 (342)
368 PF04053 Coatomer_WDAD: Coatom 95.5 0.23 5E-06 58.0 14.6 142 75-280 31-173 (443)
369 COG3391 Uncharacterized conser 95.3 3.2 6.9E-05 48.1 23.5 202 37-282 32-241 (381)
370 COG3204 Uncharacterized protei 95.3 3.6 7.8E-05 44.1 20.9 180 24-211 72-266 (316)
371 KOG1008 Uncharacterized conser 95.3 0.0049 1.1E-07 70.8 -0.0 163 33-209 100-276 (783)
372 cd00216 PQQ_DH Dehydrogenases 95.2 9.5 0.00021 45.8 30.8 113 89-216 62-191 (488)
373 PF10647 Gmad1: Lipoprotein Lp 95.2 4.3 9.2E-05 44.0 22.5 149 37-200 25-187 (253)
374 PF06433 Me-amine-dh_H: Methyl 95.0 7.3 0.00016 43.2 28.5 58 626-708 270-328 (342)
375 smart00320 WD40 WD40 repeats. 95.0 0.036 7.7E-07 38.9 4.1 33 532-564 8-40 (40)
376 KOG1832 HIV-1 Vpr-binding prot 94.9 0.03 6.4E-07 66.6 5.1 123 532-707 1097-1221(1516)
377 COG3386 Gluconolactonase [Carb 94.7 2.2 4.7E-05 47.4 18.8 196 31-271 61-276 (307)
378 PF12894 Apc4_WD40: Anaphase-p 94.6 0.09 1.9E-06 40.1 5.3 35 601-635 9-43 (47)
379 KOG2395 Protein involved in va 94.4 1.1 2.4E-05 51.2 15.5 201 35-280 276-500 (644)
380 KOG3630 Nuclear pore complex, 94.3 0.55 1.2E-05 58.2 13.6 150 40-208 46-228 (1405)
381 PF02897 Peptidase_S9_N: Proly 94.3 9.8 0.00021 44.6 24.5 128 23-150 111-261 (414)
382 PRK13616 lipoprotein LpqB; Pro 94.2 1.9 4.1E-05 52.5 18.3 185 56-280 328-525 (591)
383 PF14727 PHTB1_N: PTHB1 N-term 93.9 16 0.00034 42.4 29.4 39 47-85 37-80 (418)
384 PF10647 Gmad1: Lipoprotein Lp 93.9 4.4 9.6E-05 43.9 18.8 113 78-207 25-143 (253)
385 KOG2444 WD40 repeat protein [G 93.8 0.2 4.3E-06 51.4 7.3 109 91-218 33-142 (238)
386 TIGR03118 PEPCTERM_chp_1 conse 93.7 12 0.00026 40.6 21.9 119 20-145 14-168 (336)
387 PRK02888 nitrous-oxide reducta 93.2 1 2.2E-05 53.9 13.1 92 57-148 296-405 (635)
388 KOG2444 WD40 repeat protein [G 93.2 0.24 5.3E-06 50.7 7.0 101 47-148 70-178 (238)
389 PF14781 BBS2_N: Ciliary BBSom 93.1 4.2 9.1E-05 38.5 14.3 113 38-153 1-129 (136)
390 COG3490 Uncharacterized protei 92.9 3 6.6E-05 44.2 14.4 54 42-95 120-180 (366)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 92.5 1.2 2.6E-05 51.4 12.1 100 541-661 6-121 (415)
392 cd00216 PQQ_DH Dehydrogenases 92.4 11 0.00023 45.4 21.0 103 47-154 61-188 (488)
393 PF04841 Vps16_N: Vps16, N-ter 92.3 11 0.00023 44.2 20.1 153 36-215 81-253 (410)
394 PF14583 Pectate_lyase22: Olig 92.1 17 0.00038 41.2 20.3 150 42-210 42-224 (386)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.8 37 0.0008 41.1 34.2 113 88-216 69-197 (527)
396 COG3490 Uncharacterized protei 91.6 11 0.00025 40.1 16.7 107 30-136 62-180 (366)
397 PF10979 DUF2786: Protein of u 91.5 0.12 2.5E-06 38.5 1.7 39 1055-1093 1-39 (43)
398 PF05096 Glu_cyclase_2: Glutam 91.4 23 0.0005 38.0 19.8 177 22-217 29-212 (264)
399 PF08728 CRT10: CRT10; InterP 90.9 9.4 0.0002 46.8 17.7 147 47-208 49-246 (717)
400 KOG3630 Nuclear pore complex, 90.9 0.96 2.1E-05 56.2 9.4 150 35-201 100-265 (1405)
401 PF08728 CRT10: CRT10; InterP 90.8 3 6.6E-05 50.8 13.5 184 490-699 45-245 (717)
402 PF14870 PSII_BNR: Photosynthe 90.7 11 0.00024 41.6 16.9 147 487-697 148-301 (302)
403 PF14870 PSII_BNR: Photosynthe 90.4 33 0.00071 38.0 20.3 160 73-277 141-301 (302)
404 PF10168 Nup88: Nuclear pore c 90.3 8.4 0.00018 48.0 17.2 75 34-108 83-181 (717)
405 PF10395 Utp8: Utp8 family; I 90.1 36 0.00078 41.5 21.3 55 829-885 249-304 (670)
406 PF15390 DUF4613: Domain of un 90.0 6.8 0.00015 46.0 14.7 153 78-280 21-186 (671)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 89.9 2 4.4E-05 49.4 10.8 94 608-713 6-109 (415)
408 PF08366 LLGL: LLGL2; InterPr 89.6 6.1 0.00013 35.9 11.2 84 305-404 11-98 (105)
409 KOG2395 Protein involved in va 89.6 1.1 2.4E-05 51.3 7.9 76 28-105 423-499 (644)
410 PF14781 BBS2_N: Ciliary BBSom 89.3 10 0.00022 35.9 12.8 118 541-700 3-125 (136)
411 PF14761 HPS3_N: Hermansky-Pud 89.3 6.2 0.00013 40.7 12.4 117 89-212 29-167 (215)
412 COG3386 Gluconolactonase [Carb 89.1 14 0.00031 41.1 16.3 103 533-657 159-263 (307)
413 PF12657 TFIIIC_delta: Transcr 88.6 2.2 4.9E-05 43.2 8.9 77 606-700 7-121 (173)
414 PF14583 Pectate_lyase22: Olig 88.3 52 0.0011 37.5 25.6 97 65-164 19-124 (386)
415 PF13449 Phytase-like: Esteras 88.3 21 0.00046 40.3 17.5 115 35-150 19-193 (326)
416 TIGR02604 Piru_Ver_Nterm putat 88.1 13 0.00027 42.9 15.8 93 36-131 14-137 (367)
417 PF07569 Hira: TUP1-like enhan 87.4 2.7 5.8E-05 44.4 8.9 64 84-148 18-96 (219)
418 PF10313 DUF2415: Uncharacteri 87.3 2 4.4E-05 31.8 5.4 31 604-634 1-34 (43)
419 PF11635 Med16: Mediator compl 86.9 69 0.0015 40.7 22.5 104 536-639 180-295 (753)
420 PF12768 Rax2: Cortical protei 86.9 24 0.00053 38.6 16.1 117 506-659 17-147 (281)
421 KOG1896 mRNA cleavage and poly 86.8 7.9 0.00017 49.0 13.3 144 48-208 1047-1213(1366)
422 PF14761 HPS3_N: Hermansky-Pud 86.0 16 0.00035 37.7 13.1 128 496-635 29-165 (215)
423 PLN00033 photosystem II stabil 85.9 41 0.00088 39.0 18.1 147 37-205 240-396 (398)
424 PF02897 Peptidase_S9_N: Proly 85.6 46 0.001 38.9 19.2 58 78-135 125-187 (414)
425 KOG1898 Splicing factor 3b, su 84.1 25 0.00053 44.3 15.5 148 37-204 879-1044(1205)
426 PRK13684 Ycf48-like protein; P 83.9 40 0.00086 38.2 16.8 153 33-206 170-329 (334)
427 PF12234 Rav1p_C: RAVE protein 83.8 14 0.0003 45.0 13.3 114 492-633 38-156 (631)
428 PF15390 DUF4613: Domain of un 83.7 32 0.0007 40.6 15.5 151 35-209 19-187 (671)
429 KOG2280 Vacuolar assembly/sort 83.6 45 0.00098 40.6 17.0 74 35-110 43-116 (829)
430 PF07569 Hira: TUP1-like enhan 83.4 6.6 0.00014 41.4 9.5 71 35-108 12-97 (219)
431 PF07995 GSDH: Glucose / Sorbo 83.2 87 0.0019 35.4 26.6 60 494-560 270-329 (331)
432 PF10313 DUF2415: Uncharacteri 82.6 3.2 6.9E-05 30.8 4.6 31 537-567 1-34 (43)
433 PRK13684 Ycf48-like protein; P 82.4 40 0.00087 38.2 16.0 116 536-699 214-330 (334)
434 KOG4460 Nuclear pore complex, 82.2 25 0.00054 40.7 13.6 89 119-213 105-203 (741)
435 PF14779 BBS1: Ciliary BBSome 82.2 10 0.00022 40.6 10.1 73 602-698 175-256 (257)
436 PRK10115 protease 2; Provision 82.1 1.5E+02 0.0032 37.3 25.7 122 23-146 114-254 (686)
437 PF11715 Nup160: Nucleoporin N 81.4 6.6 0.00014 48.0 10.0 72 45-116 156-258 (547)
438 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.4 44 0.00095 40.5 16.7 125 28-154 293-495 (527)
439 PF13449 Phytase-like: Esteras 81.2 77 0.0017 35.7 17.8 118 77-200 20-168 (326)
440 COG5167 VID27 Protein involved 81.0 4.7 0.0001 46.1 7.5 84 22-107 549-633 (776)
441 PF00930 DPPIV_N: Dipeptidyl p 80.0 1.2E+02 0.0025 34.7 21.3 78 78-155 185-274 (353)
442 PF12234 Rav1p_C: RAVE protein 79.7 54 0.0012 40.0 16.3 58 601-660 27-84 (631)
443 KOG1916 Nuclear protein, conta 78.7 4.9 0.00011 49.1 7.1 109 504-633 152-265 (1283)
444 TIGR03074 PQQ_membr_DH membran 78.1 1.1E+02 0.0023 38.9 18.9 28 682-709 459-486 (764)
445 TIGR03074 PQQ_membr_DH membran 77.4 2.1E+02 0.0046 36.3 38.2 123 88-216 194-352 (764)
446 PF02333 Phytase: Phytase; In 77.2 1.4E+02 0.0031 34.2 18.7 149 50-210 116-292 (381)
447 PF05694 SBP56: 56kDa selenium 77.0 59 0.0013 37.5 14.5 171 33-210 130-344 (461)
448 PHA02713 hypothetical protein; 76.1 28 0.00062 42.5 13.1 27 492-518 349-380 (557)
449 PHA02713 hypothetical protein; 75.0 94 0.002 38.0 17.2 24 260-283 511-536 (557)
450 KOG1983 Tomosyn and related SN 74.9 99 0.0022 40.5 17.9 34 114-147 32-65 (993)
451 KOG1916 Nuclear protein, conta 73.8 2.1 4.6E-05 51.9 2.5 69 38-106 186-265 (1283)
452 TIGR03118 PEPCTERM_chp_1 conse 73.6 1.5E+02 0.0032 32.6 15.8 162 36-213 77-284 (336)
453 COG5167 VID27 Protein involved 73.6 1.4E+02 0.0031 34.7 16.3 150 82-280 473-632 (776)
454 KOG4499 Ca2+-binding protein R 73.1 1.3E+02 0.0027 31.6 15.7 101 540-657 161-262 (310)
455 PF12768 Rax2: Cortical protei 72.7 52 0.0011 36.0 12.7 77 556-657 14-97 (281)
456 PF10214 Rrn6: RNA polymerase 68.8 1.6E+02 0.0035 37.6 17.8 90 176-282 145-234 (765)
457 PLN00033 photosystem II stabil 68.7 2.3E+02 0.005 32.9 22.6 150 81-277 243-396 (398)
458 KOG2280 Vacuolar assembly/sort 67.0 2.9E+02 0.0064 34.1 17.7 75 602-701 82-156 (829)
459 KOG2377 Uncharacterized conser 66.1 2.5E+02 0.0055 32.4 17.7 113 39-154 26-147 (657)
460 TIGR02276 beta_rpt_yvtn 40-res 64.9 24 0.00053 25.6 5.8 40 86-125 1-41 (42)
461 KOG3616 Selective LIM binding 64.4 70 0.0015 38.6 11.8 95 34-131 13-111 (1636)
462 PRK13615 lipoprotein LpqB; Pro 63.8 3.4E+02 0.0074 33.0 21.3 143 39-196 337-487 (557)
463 smart00036 CNH Domain found in 63.7 2.4E+02 0.0053 31.3 16.3 62 43-105 9-72 (302)
464 PHA03098 kelch-like protein; P 63.1 2.7E+02 0.0058 33.8 17.9 24 87-110 342-370 (534)
465 TIGR02604 Piru_Ver_Nterm putat 63.0 1.9E+02 0.0041 33.2 15.6 60 78-139 15-91 (367)
466 KOG4441 Proteins containing BT 61.7 3.8E+02 0.0083 32.9 18.6 96 44-140 282-392 (571)
467 KOG4441 Proteins containing BT 61.6 2.6E+02 0.0056 34.3 17.0 110 87-213 380-504 (571)
468 KOG2063 Vacuolar assembly/sort 61.5 96 0.0021 39.4 13.2 82 542-638 20-101 (877)
469 PF01011 PQQ: PQQ enzyme repea 60.5 11 0.00024 27.2 3.1 25 684-708 2-26 (38)
470 PF12341 DUF3639: Protein of u 58.6 23 0.00051 23.5 3.9 25 37-63 3-27 (27)
471 PF11635 Med16: Mediator compl 58.6 3.5E+02 0.0075 34.5 17.9 182 90-283 64-292 (753)
472 PF07995 GSDH: Glucose / Sorbo 58.4 1.3E+02 0.0028 34.1 12.9 98 37-136 3-131 (331)
473 KOG1900 Nuclear pore complex, 57.9 98 0.0021 40.4 12.4 154 54-210 96-274 (1311)
474 PF05096 Glu_cyclase_2: Glutam 57.2 2.8E+02 0.0061 30.0 23.7 168 68-283 34-206 (264)
475 KOG1898 Splicing factor 3b, su 57.1 5.4E+02 0.012 33.2 33.2 122 34-155 536-679 (1205)
476 PF11715 Nup160: Nucleoporin N 57.0 68 0.0015 39.2 11.2 98 546-644 156-259 (547)
477 KOG1900 Nuclear pore complex, 53.7 3.6E+02 0.0079 35.5 16.3 179 491-699 87-271 (1311)
478 PF05935 Arylsulfotrans: Aryls 53.5 4.6E+02 0.01 31.3 17.5 156 55-218 126-311 (477)
479 PF10214 Rrn6: RNA polymerase 53.0 4.5E+02 0.0098 33.6 17.8 133 74-212 77-236 (765)
480 PF05694 SBP56: 56kDa selenium 51.7 2.6E+02 0.0056 32.5 13.3 40 603-642 311-354 (461)
481 smart00564 PQQ beta-propeller 51.2 20 0.00042 24.5 3.1 23 684-706 8-30 (33)
482 KOG4460 Nuclear pore complex, 51.2 91 0.002 36.4 9.6 95 537-646 104-211 (741)
483 COG5276 Uncharacterized conser 51.2 3.7E+02 0.0079 29.5 20.7 164 24-212 33-203 (370)
484 TIGR02276 beta_rpt_yvtn 40-res 51.0 65 0.0014 23.2 6.1 31 613-643 1-32 (42)
485 PF02333 Phytase: Phytase; In 49.5 4.6E+02 0.01 30.1 26.3 146 44-208 65-237 (381)
486 KOG2063 Vacuolar assembly/sort 48.4 2.6E+02 0.0056 35.7 13.9 69 41-110 20-100 (877)
487 PF08801 Nucleoporin_N: Nup133 47.3 2.8E+02 0.006 32.5 13.9 32 177-210 190-221 (422)
488 PF12657 TFIIIC_delta: Transcr 47.3 74 0.0016 32.1 7.8 31 604-634 86-122 (173)
489 COG5276 Uncharacterized conser 45.2 4.5E+02 0.0098 28.8 13.7 103 497-635 98-201 (370)
490 PF07676 PD40: WD40-like Beta 44.2 82 0.0018 22.4 5.6 30 601-630 6-38 (39)
491 PF01436 NHL: NHL repeat; Int 44.1 49 0.0011 22.0 3.9 26 37-62 3-28 (28)
492 PF01011 PQQ: PQQ enzyme repea 41.9 72 0.0016 22.9 4.9 27 617-643 2-28 (38)
493 PHA03098 kelch-like protein; P 41.5 3.9E+02 0.0085 32.4 14.4 57 98-154 406-469 (534)
494 PF10395 Utp8: Utp8 family; I 41.2 7.9E+02 0.017 30.5 24.2 80 26-105 60-158 (670)
495 PF14779 BBS1: Ciliary BBSome 40.9 1.6E+02 0.0034 31.7 9.2 70 75-144 175-255 (257)
496 COG4590 ABC-type uncharacteriz 40.7 1.1E+02 0.0023 35.1 8.1 155 34-210 219-388 (733)
497 PHA02790 Kelch-like protein; P 40.7 7.1E+02 0.015 29.8 18.6 92 47-139 272-373 (480)
498 PRK13613 lipoprotein LpqB; Pro 40.6 7.9E+02 0.017 30.3 19.9 155 37-207 364-536 (599)
499 smart00564 PQQ beta-propeller 40.4 56 0.0012 22.2 4.0 24 617-640 8-31 (33)
500 COG3292 Predicted periplasmic 40.2 4E+02 0.0086 31.9 12.7 195 36-278 290-489 (671)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=354.28 Aligned_cols=650 Identities=15% Similarity=0.167 Sum_probs=411.2
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEE
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~ 101 (1100)
++++++.+..|-.++-..+.|++||.-+.+.. .++|-|||+ ++....+..++...|++++.+|+|.+|+++...|...
T Consensus 2 k~efrfsNllGTvyr~Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~ 80 (893)
T KOG0291|consen 2 KTEFRFSNLLGTVYRAGNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRAL 80 (893)
T ss_pred ccccchhhcccceeecCcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEE
Confidence 46788889999999999999999999888765 689999999 6678889999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001321 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 102 vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1100)
+-++..+.+++.+.+...|.|+.|+|+++++|+|..+- +.||........ .-.||.+.... ..+...|++
T Consensus 81 lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~-lqiw~~P~~~~~-~~~pFvl~r~~--------~g~fddi~s 150 (893)
T KOG0291|consen 81 LVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNL-LQIWHAPGEIKN-EFNPFVLHRTY--------LGHFDDITS 150 (893)
T ss_pred EEecccceeeEEEeecCccceEEECCCCcEEEEEecce-eEEEecCcchhc-ccCcceEeeee--------cCCccceeE
Confidence 99999999999999999999999999999999998775 789998753321 12234332111 122378999
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEccCCEE---EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
|.| ++|...+++|+.|.++++|+++..+- ..+.+| ...|.+.. +
T Consensus 151 i~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gH------------------------------kd~Vvacf-F 197 (893)
T KOG0291|consen 151 IDW--SDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGH------------------------------KDYVVACF-F 197 (893)
T ss_pred EEe--ccCCceEEeccccceEEEEEeccccccceEeccCC------------------------------CcceEEEE-e
Confidence 999 66899899999999999999987653 334455 45555544 4
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCC--CCCCCcc-cCCCCcceeeeccccCCCc----ceEEEEeccccc-----CCCCCC
Q 001321 259 SSSGSILAVGYIDGDILLWNTSTT--ASTKGQQ-TGSRNNVVKLELSSAERRL----PVIVLHWSTNKE-----SRSNID 326 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~----~i~~~~w~~~~~-----~~~~~~ 326 (1100)
..|...+++.+.||.|.+|.+... ....+.. ............... ... .....+|....+ .+....
T Consensus 198 ~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee-k~~~~~~~k~~k~~ln~~~~kvtaa~fH~~ 276 (893)
T KOG0291|consen 198 GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEE-KTHKIFWYKTKKHYLNQNSSKVTAAAFHKG 276 (893)
T ss_pred ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchh-hhcceEEEEEEeeeecccccceeeeeccCC
Confidence 689999999999999999998732 1111000 000000000000000 000 011112222110 113344
Q ss_pred ceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCC-CcceeEEEccCCCCCCCCCcceEEEEec-CCeeeEee
Q 001321 327 GRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLT-GSFADMILLSSAGATVGNHKADLFVLTS-PGQLHFYD 404 (1100)
Q Consensus 327 ~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~-~~v~d~~~~p~~~~~~~~~~~~l~vl~~-~G~l~~~d 404 (1100)
..++++|...+ +..+...+++..+ ..+... .++.++.+...+. -+.+.+. -|++++|+
T Consensus 277 t~~lvvgFssG-------~f~LyelP~f~li-----h~LSis~~~I~t~~~N~tGD--------WiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 277 TNLLVVGFSSG-------EFGLYELPDFNLI-----HSLSISDQKILTVSFNSTGD--------WIAFGCSKLGQLLVWE 336 (893)
T ss_pred ceEEEEEecCC-------eeEEEecCCceEE-----EEeecccceeeEEEecccCC--------EEEEcCCccceEEEEE
Confidence 44555554433 2222222221111 111111 2333333332210 1122111 14444444
Q ss_pred cCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCccc
Q 001321 405 NASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1100)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~ 484 (1100)
|+.+ .... -..||..
T Consensus 337 --------WqsE------------------------------------------sYVl---------------KQQgH~~ 351 (893)
T KOG0291|consen 337 --------WQSE------------------------------------------SYVL---------------KQQGHSD 351 (893)
T ss_pred --------eecc------------------------------------------ceee---------------ecccccc
Confidence 1111 1111 1235666
Q ss_pred ccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEE
Q 001321 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1100)
Q Consensus 485 ~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~ 564 (1100)
.+.+++.+|||+++|||++||.|+|||...+.|. ++...|...|+++.|+..++.|++.+.||+||.||
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~-----------vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF-----------VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEE-----------EEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 6678899999999999999999999999999888 78999999999999999999999999999999999
Q ss_pred ecCCCCCcce------eeec---cCCCc-------------eeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe
Q 001321 565 LNGSLDAKNF------LFVL---ETKSE-------------VHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 565 l~~~~~~~~~------~~~~---~~~~~-------------~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs 622 (1100)
+....+..++ +|.+ +..++ +..++. -+.+-.+.+|.+||.+|+|+|+|..||+|+
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---CeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 9888654443 2221 22233 222222 235667889999999999999999999999
Q ss_pred CCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCC
Q 001321 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1100)
Q Consensus 623 ~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g 702 (1100)
.|.+|++||+-...-.. -...+.+.|+++.|.+.+.. |+++|-||.|.+||...
T Consensus 498 WDkTVRiW~if~s~~~v---Etl~i~sdvl~vsfrPdG~e----------------------laVaTldgqItf~d~~~- 551 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTV---ETLEIRSDVLAVSFRPDGKE----------------------LAVATLDGQITFFDIKE- 551 (893)
T ss_pred ccceEEEEEeeccCcee---eeEeeccceeEEEEcCCCCe----------------------EEEEEecceEEEEEhhh-
Confidence 99999999987652210 11137889999999988877 99999999999999555
Q ss_pred ccccCCccccCCCceeEEEEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCE
Q 001321 703 NMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDAL 782 (1100)
Q Consensus 703 ~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1100)
...+..||+..++...+... +. + ++.-+...+.-..-.++ ..+.+
T Consensus 552 ---------------~~q~~~IdgrkD~~~gR~~~----------D~--~-----ta~~sa~~K~Ftti~yS---aDG~~ 596 (893)
T KOG0291|consen 552 ---------------AVQVGSIDGRKDLSGGRKET----------DR--I-----TAENSAKGKTFTTICYS---ADGKC 596 (893)
T ss_pred ---------------ceeeccccchhhcccccccc----------ce--e-----ehhhcccCCceEEEEEc---CCCCE
Confidence 34455566655544433311 10 0 00000000000001122 11667
Q ss_pred EEEEecC-eeEEEeccccee--ecccccccceeeeeec--CCc--eEEEEEEEec------CcEEEeecCChhh--hhhc
Q 001321 783 VLLCCED-SVRLYSRKSVIQ--KVKHKNRCCWASTIEK--DEK--VCGLLLLFQT------GAVQIRSLPDLEL--VMES 847 (1100)
Q Consensus 783 ~~~cse~-~vrl~sl~~~~~--~~~~~~~c~~~~~~~~--~~~--~~~l~~~~~~------G~i~i~slp~l~~--~~~~ 847 (1100)
++..++. .+++|+.+.... +..+..--.|..+..- +.+ ..+=+.+..+ |-|-| .||.-.- +...
T Consensus 597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~-~lpG~~~gdlssR 675 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDI-ALPGVQRGDLSSR 675 (893)
T ss_pred EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccc-cCCccccCCcccc
Confidence 7777766 999999987755 3333333345433111 111 1111111111 11111 2332110 0111
Q ss_pred cccceeeeeeccccccceeec-CCcEEEEcceeEEEEEe
Q 001321 848 SLMSILRWNFKANMDKTISAD-NGQITLANGSEVAFVNL 885 (1100)
Q Consensus 848 ~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g~e~~~~s~ 885 (1100)
..++..| +.++.|| +|+-......|...|..
T Consensus 676 r~rpeIr-------v~sv~fsPtgraFAaatTEGl~IYs 707 (893)
T KOG0291|consen 676 RFRPEIR-------VTSVQFSPTGRAFAAATTEGLLIYS 707 (893)
T ss_pred ccCceEE-------EEEEEECCCcCeeeeecccceEEEe
Confidence 2233333 6789999 99998888866666533
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-39 Score=333.75 Aligned_cols=364 Identities=13% Similarity=0.214 Sum_probs=274.6
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
.+.+|..+|-+++|+|+|.+|++++.|.++++||+.+...+.+. .|...|.|++|+||++++|+|+.+|+|++|+-..
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt- 188 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT- 188 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC-
Confidence 45689999999999999999999999999999999999888776 8889999999999999999999999999999654
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC---CCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCcccccc
Q 001321 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN---SSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKD 225 (1100)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~---~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~ 225 (1100)
+... .-.+++|. ..|++++|+|- ....+|++++.||.|+|||+..+.. ....||
T Consensus 189 -g~~~--g~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH------- 246 (480)
T KOG0271|consen 189 -GQQI--GRALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH------- 246 (480)
T ss_pred -CCcc--cccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-------
Confidence 2222 12367776 89999999984 2355799999999999999999865 456777
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
...|+|++|- -+ .+|++|+.|++|++|+...|.....+ ..+
T Consensus 247 -----------------------T~~VTCvrwG-G~-gliySgS~DrtIkvw~a~dG~~~r~l-------------kGH- 287 (480)
T KOG0271|consen 247 -----------------------TASVTCVRWG-GE-GLIYSGSQDRTIKVWRALDGKLCREL-------------KGH- 287 (480)
T ss_pred -----------------------ccceEEEEEc-CC-ceEEecCCCceEEEEEccchhHHHhh-------------ccc-
Confidence 8899999995 44 47999999999999999876322110 000
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
.||.... +. .....|-+|.
T Consensus 288 -------ahwvN~l--al-sTdy~LRtga--------------------------------------------------- 306 (480)
T KOG0271|consen 288 -------AHWVNHL--AL-STDYVLRTGA--------------------------------------------------- 306 (480)
T ss_pred -------chheeee--ec-cchhhhhccc---------------------------------------------------
Confidence 1222111 00 0000000000
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
|+... ....+ . + + .--+++.++-.
T Consensus 307 -----------------f~~t~----------~~~~~-------~-------------s---e-~~~~Al~rY~~----- 330 (480)
T KOG0271|consen 307 -----------------FDHTG----------RKPKS-------F-------------S---E-EQKKALERYEA----- 330 (480)
T ss_pred -----------------ccccc----------ccCCC-------h-------------H---H-HHHHHHHHHHH-----
Confidence 00000 00000 0 0 0 00001111111
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCc-eeEEeeeccceeeeeecCCCCCeeEEEE
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSF 544 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~laf 544 (1100)
..-..+..+++|++|+++.+|+-.... .. ..+.+|..-|..+.|
T Consensus 331 ------------------------~~~~~~erlVSgsDd~tlflW~p~~~kkpi-----------~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 331 ------------------------VLKDSGERLVSGSDDFTLFLWNPFKSKKPI-----------TRMTGHQALVNHVSF 375 (480)
T ss_pred ------------------------hhccCcceeEEecCCceEEEecccccccch-----------hhhhchhhheeeEEE
Confidence 122334689999999999999865332 11 236799999999999
Q ss_pred eeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCC
Q 001321 545 CFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC 624 (1100)
Q Consensus 545 spd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~d 624 (1100)
|||++++|+++.|..|++|+-.++. .+.+|++|-++|..++||.|.++|++|+.|
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk-------------------------~lasfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGK-------------------------FLASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcc-------------------------hhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence 9999999999999999999998873 467889999999999999999999999999
Q ss_pred ceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 625 G~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
.+++|||+++.++. ..+.||.+.|.+++|+++|.. +++|++|..+++|.
T Consensus 431 sTLKvw~V~tkKl~---~DLpGh~DEVf~vDwspDG~r----------------------V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLK---QDLPGHADEVFAVDWSPDGQR----------------------VASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeec---ccCCCCCceEEEEEecCCCce----------------------eecCCCceEEEeec
Confidence 99999999999887 566789999999999977765 99999999999995
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=339.48 Aligned_cols=468 Identities=13% Similarity=0.179 Sum_probs=338.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE--EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
+..+++++.+||+.+|.++...+-+++|.++...++ ...-|++||--++|.|.+..|++++.|+.++|||+..+...+
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 457899999999999999999999999999777655 334599999999999999999999999999999999999998
Q ss_pred ee-ecCCCeEEEEEecCCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 113 CL-KWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 113 ~~-~~~~~Vt~~~~s~~~~--~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.+ .|++.|.++.|.|+.. .|++|..|++|++|++...+..+ .....|. +.|++++|.+ +
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl----~~~~~H~------------S~vtsL~~~~--d 203 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCL----HTMILHK------------SAVTSLAFSE--D 203 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHH----HHHHhhh------------hheeeeeecc--C
Confidence 88 7799999999999865 58999999999999998533212 2244454 8999999977 5
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC-----CCE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-----GSI 264 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd-----g~~ 264 (1100)
+..+++++.|..+.|||+.+-+......- ...+.++.+. ++ |.+
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~------------------------------ye~~E~vv~l-~~~~~~~~~~ 252 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPL------------------------------YESLESVVRL-REELGGKGEY 252 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheech------------------------------hhheeeEEEe-chhcCCcceE
Confidence 77799999999999999966544322211 3345556655 55 679
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEE-EEeCCCCCCcceE
Q 001321 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF-VYGGDEIGSEEVL 343 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~ll-v~gg~~~g~~~~l 343 (1100)
++|++.+|.+++||.+++.....+... .. ..+..+ .+....++++ ++..+. +
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~-----------~~---~e~~~~-------~~~~~~~~~l~vtaeQn------l 305 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQS-----------DS---EEIDHL-------LAIESMSQLLLVTAEQN------L 305 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccC-----------Cc---hhhhcc-------eeccccCceEEEEccce------E
Confidence 999999999999999887432211100 00 001111 1122233333 333222 3
Q ss_pred EEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCC
Q 001321 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1100)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1100)
.+++ .... ...+.-+..+..+.||.+... +...++|.++++++.+|+.....+.+
T Consensus 306 ~l~d--~~~l-----~i~k~ivG~ndEI~Dm~~lG~-------e~~~laVATNs~~lr~y~~~~~~c~i----------- 360 (775)
T KOG0319|consen 306 FLYD--EDEL-----TIVKQIVGYNDEILDMKFLGP-------EESHLAVATNSPELRLYTLPTSYCQI----------- 360 (775)
T ss_pred EEEE--cccc-----EEehhhcCCchhheeeeecCC-------ccceEEEEeCCCceEEEecCCCceEE-----------
Confidence 2332 1110 011233445568899998764 34578899999999998754443332
Q ss_pred ccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEec
Q 001321 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1100)
Q Consensus 424 ~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~ 503 (1100)
.-||...+..+.....+-+|+||+.
T Consensus 361 -------------------------------------------------------i~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 361 -------------------------------------------------------IPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred -------------------------------------------------------EeCchhheeeeeecccCcEEEEecC
Confidence 1233333333344456679999999
Q ss_pred CCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC-CeEEEEecCceEEEEEecCCCCCcceeeeccCCC
Q 001321 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKS 582 (1100)
Q Consensus 504 DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~ 582 (1100)
|.+|++|.+...+...... ....+|...|.+++++..+ .+|++++.|+++++|++.......+
T Consensus 386 D~svilWr~~~~~~~~~~~-------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------- 449 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCV-------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------- 449 (775)
T ss_pred CceEEEEEecCCcchhhhh-------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc---------
Confidence 9999999885444321111 1145899999999998765 4789999999999999987321100
Q ss_pred ceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccC
Q 001321 583 EVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNT 662 (1100)
Q Consensus 583 ~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~ 662 (1100)
...+.+......|...|.+++++|+.+++|+|+.|.+.+||+++...+. ..+.||...|.++.|+++.
T Consensus 450 -------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~---~vLsGH~RGvw~V~Fs~~d-- 517 (775)
T KOG0319|consen 450 -------PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL---GVLSGHTRGVWCVSFSKND-- 517 (775)
T ss_pred -------cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE---EEeeCCccceEEEEecccc--
Confidence 0001122234679999999999999999999999999999999988877 6778999999999999654
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCcccc
Q 001321 663 HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1100)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~ 706 (1100)
.+|++++.|++|.+|..++...+.
T Consensus 518 --------------------q~laT~SgD~TvKIW~is~fSClk 541 (775)
T KOG0319|consen 518 --------------------QLLATCSGDKTVKIWSISTFSCLK 541 (775)
T ss_pred --------------------ceeEeccCCceEEEEEeccceeee
Confidence 469999999999999977765543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=322.45 Aligned_cols=362 Identities=14% Similarity=0.149 Sum_probs=265.9
Q ss_pred ccccceeeeec-----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEE
Q 001321 22 ADLNLRIAVHY-----GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1100)
Q Consensus 22 ~~~~~~~~~~~-----G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s 95 (1100)
..|..|-+.|+ ||.+.|.|++|+|+++.||+|+.|.++|+||.... ......+|...|.+++|+|||..|++++
T Consensus 97 avfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 97 AVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred hhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc
Confidence 44666666664 89999999999999999999999999999999654 4556789999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeee-e-ecCCCeEEEEEec-----CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 96 NDNEIQVWSLESRSLACC-L-KWESNITAFSVIS-----GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 96 ~d~~I~vWd~~s~~~l~~-~-~~~~~Vt~~~~s~-----~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
.||+|.+||..+++.+-. + .|...|++++|.| ..++|++++.||+|+||++.. ++.. +.+.+|.
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~---~~lsgHT---- 247 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCV---RTLSGHT---- 247 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEE---EEeccCc----
Confidence 999999999999876533 3 7889999999986 457999999999999999875 3333 4588888
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCC---CCCCCCccccCCCC
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDS---PSEGDSTFLEGISE 244 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~---~~g~~~~~g~~~~~ 244 (1100)
.+|+||.| ..+| ++++|+.|++|++|+...|++. .+.||.-++-...+.+. -.|+....+..+..
T Consensus 248 --------~~VTCvrw--GG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 248 --------ASVTCVRW--GGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred --------cceEEEEE--cCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 89999999 5455 5999999999999999888654 35566211111000000 00110000100000
Q ss_pred CCCC----CCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEeccccc
Q 001321 245 HQPE----EKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKE 320 (1100)
Q Consensus 245 ~~~~----~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~ 320 (1100)
...+ ..+-..+| -..+..|++|++|+++.+|+..... .++.
T Consensus 317 ~se~~~~Al~rY~~~~--~~~~erlVSgsDd~tlflW~p~~~k----------kpi~----------------------- 361 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVL--KDSGERLVSGSDDFTLFLWNPFKSK----------KPIT----------------------- 361 (480)
T ss_pred hHHHHHHHHHHHHHhh--ccCcceeEEecCCceEEEecccccc----------cchh-----------------------
Confidence 0000 00001111 1223344455555555554432110 0000
Q ss_pred CCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCee
Q 001321 321 SRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQL 400 (1100)
Q Consensus 321 ~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l 400 (1100)
T Consensus 362 -------------------------------------------------------------------------------- 361 (480)
T KOG0271|consen 362 -------------------------------------------------------------------------------- 361 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccC
Q 001321 401 HFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSG 480 (1100)
Q Consensus 401 ~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~G 480 (1100)
-..
T Consensus 362 -----------------------------------------------------------------------------rmt 364 (480)
T KOG0271|consen 362 -----------------------------------------------------------------------------RMT 364 (480)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 011
Q ss_pred CcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceE
Q 001321 481 GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1100)
Q Consensus 481 G~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V 560 (1100)
||...++-+.|+||++++++|+-|.+||+||..++... ..+++|-.+|..++|+.|+++|++|+.|.++
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-----------asfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-----------ASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-----------hhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 33334445579999999999999999999999999865 5688999999999999999999999999999
Q ss_pred EEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
++|++.+.. +...+.+|...|.++.|+|||..+|+|+.|..+++|.
T Consensus 434 Kvw~V~tkK-------------------------l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 434 KVWDVRTKK-------------------------LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEEeeeee-------------------------ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999998862 3455678999999999999999999999999999994
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-35 Score=314.08 Aligned_cols=516 Identities=13% Similarity=0.120 Sum_probs=335.2
Q ss_pred ceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCC---CCCCEEEEEEEeCCCEEEEEECC--Cc
Q 001321 26 LRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP---SQLPYKNLEFLQNQGFLISITND--NE 99 (1100)
Q Consensus 26 ~~~~~~~-G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~---h~~~V~~l~fs~d~~~Lls~s~d--~~ 99 (1100)
+..+..| +|.+.++...|+|.|-++|+|...|.|||||..+.+.++..+ -.+||+.++|+.+++++++++.. +.
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 4445555 477888999999999999999999999999998877776544 56799999999999999999864 33
Q ss_pred EEEEEcCCCceeeee-ecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 100 IQVWSLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
..++-++++.-+-.+ .|...|.+++|-|... ++++|++|++|-++.=. ||++.... +.|..
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP---------PFKFk~s~--------r~Hsk 191 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP---------PFKFKSSF--------REHSK 191 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC---------Ceeeeecc--------ccccc
Confidence 444444455555554 7788899999999987 68999999998665422 56565322 22336
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
-|.++.|+| +|.++++++.||.+.+||-.+++.+..++- ...+.+.|.++.|
T Consensus 192 FV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~--------------------------~~aHkGsIfalsW 243 (603)
T KOG0318|consen 192 FVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELED--------------------------SDAHKGSIFALSW 243 (603)
T ss_pred ceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecC--------------------------CCCccccEEEEEE
Confidence 799999988 799999999999999999999988776642 1122899999999
Q ss_pred ecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCC--Ccc-eeeeccc---------------cCC--CcceEEEEecc
Q 001321 258 ASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSR--NNV-VKLELSS---------------AER--RLPVIVLHWST 317 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~--~~~-~~l~~~~---------------~~~--~~~i~~~~w~~ 317 (1100)
. ||+..++|++.|.++++||+.+.......+.... +.+ ..+|... ... ...++.-|.-.
T Consensus 244 s-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 244 S-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred C-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 5 9999999999999999999998864443221111 111 1122100 000 01111112112
Q ss_pred cccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecC
Q 001321 318 NKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSP 397 (1100)
Q Consensus 318 ~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~ 397 (1100)
...+..++++..+.+|.-++ .+.-|.......-+ ...-.....+..|. ..+.
T Consensus 323 ITaLtv~~d~~~i~SgsyDG-------~I~~W~~~~g~~~~---~~g~~h~nqI~~~~------------------~~~~ 374 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDG-------HINSWDSGSGTSDR---LAGKGHTNQIKGMA------------------ASES 374 (603)
T ss_pred eeEEEEcCCCCEEEeeccCc-------eEEEEecCCccccc---cccccccceEEEEe------------------ecCC
Confidence 22223445555666665554 33333222110000 00000111222222 2233
Q ss_pred CeeeEeecCceeEee-eccCCCCCC---CCccCCcccccCCCc-e---EEEEEEeccCCCCchhhHhHHHhhccccCCCc
Q 001321 398 GQLHFYDNASLTTLL-SQQEKKPSV---CPVEFPGVIPISDPI-M---TVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1100)
Q Consensus 398 G~l~~~d~~~~~~~~-~~~~~~~~~---~~~~~p~~~~~~~~~-i---t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1100)
++++...-....++. .-..+.... .....|..+....+. + +|..-..+-++ ..+
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~---------------~~~--- 436 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD---------------QTK--- 436 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec---------------CCc---
Confidence 454443322211111 111111111 112222222222221 1 11111111000 000
Q ss_pred ccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCC
Q 001321 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1100)
Q Consensus 470 ~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~ 549 (1100)
. .+-......++++++|+++.++.|++||.|+||.+....+.. ...+..|.++|++++||||+.
T Consensus 437 -----~--~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e---------e~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 437 -----V--SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE---------EAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred -----c--eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc---------eeeeecccCCceEEEECCCCc
Confidence 0 000011233566899999999999999999999999877431 123568999999999999999
Q ss_pred eEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEE
Q 001321 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1100)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~v 629 (1100)
+||+|+..+.|.+|+...... -...+..|.+.|.+|+|||+..+||+|+-|-+|.|
T Consensus 501 yla~~Da~rkvv~yd~~s~~~------------------------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vii 556 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREV------------------------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVII 556 (603)
T ss_pred EEEEeccCCcEEEEEcccCce------------------------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEE
Confidence 999999999999999987622 12345679999999999999999999999999999
Q ss_pred EecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 630 LDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 630 wD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
|++..|.-. +.+...|...|+.|.|-. ...|++.+.|..|.+|.
T Consensus 557 ysv~kP~~~--i~iknAH~~gVn~v~wld-----------------------e~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 557 YSVKKPAKH--IIIKNAHLGGVNSVAWLD-----------------------ESTVVSSGQDANIKVWN 600 (603)
T ss_pred EEccChhhh--eEeccccccCceeEEEec-----------------------CceEEeccCcceeEEec
Confidence 999987544 223346999999999972 24499999999999998
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=320.55 Aligned_cols=567 Identities=15% Similarity=0.159 Sum_probs=396.6
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC---CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee--e
Q 001321 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS---PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--K 115 (1100)
Q Consensus 41 la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~---~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~--~ 115 (1100)
++|+++|+.|++... ..|.+-|....+..+.. +-...+++++..||+.+|+++....-+++|++.+++++.+. .
T Consensus 25 ~~~s~nG~~L~t~~~-d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecC-ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 999999999999874 46777777665553322 23447999999999999999999999999999999998887 5
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEE
Q 001321 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~ 195 (1100)
|+++|.-++|+|.+..+++|+.||.|+||+|... ..+ ..+.+|. +.|.++.|||......|++
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~--~~t---h~fkG~g------------GvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG--YCT---HSFKGHG------------GVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCC--EEE---EEecCCC------------ceEEEEEeCCccchhheee
Confidence 8999999999999999999999999999999863 233 3377766 9999999999766666899
Q ss_pred EEcCCEEEEEEccCCEE--EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc
Q 001321 196 AYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1100)
Q Consensus 196 ~~~dg~V~lwdl~~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~ 273 (1100)
|+.|++|++||+...+. .....| ...|+++.+. +|+..+++++.|..
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H------------------------------~S~vtsL~~~-~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILH------------------------------KSAVTSLAFS-EDSLELLSVGRDKV 215 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhh------------------------------hhheeeeeec-cCCceEEEeccCcE
Confidence 99999999999997654 112233 7889999975 99999999999999
Q ss_pred EEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccc
Q 001321 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1100)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~ 353 (1100)
+.+||....+.....+.. . ..+.+..++- . ....+.++++.|.++ ++.+|....
T Consensus 216 i~vwd~~~~~~l~~lp~y--e-----------~~E~vv~l~~---~---~~~~~~~~~TaG~~g-------~~~~~d~es 269 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLY--E-----------SLESVVRLRE---E---LGGKGEYIITAGGSG-------VVQYWDSES 269 (775)
T ss_pred EEEeehhhhhhhheechh--h-----------heeeEEEech---h---cCCcceEEEEecCCc-------eEEEEeccc
Confidence 999999543222211100 0 0001111110 0 222255777777666 777776654
Q ss_pred cccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccC
Q 001321 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1100)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 433 (1100)
...++...+.+ ...+.+...++.. ..++.++.+-++.+||..++...-.
T Consensus 270 ~~~~~~~~~~~---~~e~~~~~~~~~~--------~~~l~vtaeQnl~l~d~~~l~i~k~-------------------- 318 (775)
T KOG0319|consen 270 GKCVYKQRQSD---SEEIDHLLAIESM--------SQLLLVTAEQNLFLYDEDELTIVKQ-------------------- 318 (775)
T ss_pred chhhhhhccCC---chhhhcceecccc--------CceEEEEccceEEEEEccccEEehh--------------------
Confidence 33333222222 2235555555543 2577777787888886444322111
Q ss_pred CCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCC
Q 001321 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1100)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~ 513 (1100)
+.|-+.....+-...|..++++.++..+.+|+|+..
T Consensus 319 --------------------------------------------ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 319 --------------------------------------------IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred --------------------------------------------hcCCchhheeeeecCCccceEEEEeCCCceEEEecC
Confidence 112222222233456778899999999999999998
Q ss_pred CCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcc
Q 001321 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1100)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 593 (1100)
+..++ + +.+|...|.+|+...+|-+|++|+.|..|++|+++.+... .
T Consensus 355 ~~~c~-----------i-i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~---------------------~ 401 (775)
T KOG0319|consen 355 TSYCQ-----------I-IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK---------------------S 401 (775)
T ss_pred CCceE-----------E-EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch---------------------h
Confidence 88876 3 7899999999997777889999999999999999554221 1
Q ss_pred eeEEEEeecCcCeEEEEEcCCC-CEEEEEeCCceEEEEecCC-----ceEEEEeec-CCCCCCCeEEEEEeecccCcccc
Q 001321 594 LCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNL-----LSVLFFTDD-ISGSSSPIISMTWTEFKNTHSLA 666 (1100)
Q Consensus 594 ~~~~~~~~h~~~VtsLafSp~g-~~LavGs~dG~V~vwD~~~-----~~~~~~~~~-~~~~~~~V~sl~fs~~~~~~~~~ 666 (1100)
.++....+|...|++++++..+ .++++++.|+++++|++.. ..++++.+. ...|...|.+++.++.
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n------- 474 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN------- 474 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC-------
Confidence 2556678999999999998766 6899999999999999987 112222111 1149999999998733
Q ss_pred CCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCC-CceeEEEEEecccCCCCccchhhhhhhhhhc
Q 001321 667 KNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKK-KVIAISMEVIEPVCGFPIEKQAEQSAEENAA 745 (1100)
Q Consensus 667 ~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1100)
..++++|+.|.+..+|+.+.+.+++.. ... .+ +|.
T Consensus 475 ---------------dkLiAT~SqDktaKiW~le~~~l~~vL---sGH~RG----vw~---------------------- 510 (775)
T KOG0319|consen 475 ---------------DKLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRG----VWC---------------------- 510 (775)
T ss_pred ---------------CceEEecccccceeeecccCceEEEEe---eCCccc----eEE----------------------
Confidence 467999999999999996643333221 110 11 111
Q ss_pred cCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEecccceeeccccc------ccceeeeeecC
Q 001321 746 KNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQKVKHKN------RCCWASTIEKD 818 (1100)
Q Consensus 746 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~~~~~~~~------~c~~~~~~~~~ 818 (1100)
+.|+ .+++++++||-| .|++|++..-.+-..+.+ .|.|..
T Consensus 511 -------------------------V~Fs---~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~----- 557 (775)
T KOG0319|consen 511 -------------------------VSFS---KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR----- 557 (775)
T ss_pred -------------------------EEec---cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-----
Confidence 1121 127899999977 999999987766222221 344433
Q ss_pred CceEEEEEEEecCcEEEeecCChhhhhhccccceeeeeeccccccceeec-CCcEEEEcc-eeEEEE
Q 001321 819 EKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 883 (1100)
Q Consensus 819 ~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g-~e~~~~ 883 (1100)
++..|+...+||.|+||.+-+=+=++ ++-. +.+-+=+++.+ ++..++++| ++...+
T Consensus 558 -~~~qliS~~adGliKlWnikt~eC~~--tlD~------H~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 558 -NGKQLISAGADGLIKLWNIKTNECEM--TLDA------HNDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred -CCcEEEeccCCCcEEEEeccchhhhh--hhhh------ccceeEEEeecCccceeEecCCCeEEEE
Confidence 78899999999999999999855221 1111 22334455566 777777777 554444
No 7
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=360.01 Aligned_cols=880 Identities=19% Similarity=0.161 Sum_probs=486.0
Q ss_pred ccCCCCCCCccccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCC--CEEEEEEEeCC
Q 001321 11 KHNSQHGSLTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQ 88 (1100)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~--~V~~l~fs~d~ 88 (1100)
.+.+.++.+..+.|.++..++||++++...+||||.+++||+|+.+|.|++|+.++.+......-.. ++..+.|....
T Consensus 11 ~~~~~~~~~~~~~f~~~~~~~~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~ 90 (993)
T KOG1983|consen 11 KKNPPRERLKNDLFAFDKTNRHGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGI 90 (993)
T ss_pred cCCCccccccchhcccccceecCCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecc
Confidence 4446679999999999999999999999999999999999999999999999999999887776555 55666666655
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
........+..+.+|..... ......+.++++...+--.| ..| .++.+++|+.... .+.. +.+.+-. ..
T Consensus 91 s~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~--~~~~--~~~~~~~--~~ 159 (993)
T KOG1983|consen 91 SRNLVLSDDDSLHLWSIKIK---TGVFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRH--QLSD--LKYAGTE--SS 159 (993)
T ss_pred cccceeecccceeeeccccc---ceeecCCcceeccCCCCcch-hcc-cCceeeEeeechh--hhcc--ceecccc--cc
Confidence 56666666777777776443 33455677888888888888 788 9999988887641 1111 0010000 00
Q ss_pred cCCCCCCCCCeEEEEeccCCCCC----------------------------EEEEEEcCCEEEEEEccCCEEEEEecCCc
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGN----------------------------RVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~----------------------------~ll~~~~dg~V~lwdl~~~~~~~~~~~~~ 220 (1100)
...+-........+.+.+.+.+. ..+.++..+.+.+|+-........+
T Consensus 160 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (993)
T KOG1983|consen 160 NFVPYESLSPTLSIEGLVIDLDTVLISLPDAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAY---- 235 (993)
T ss_pred ccceeeeeccceeeeccccccccceeecccccccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhc----
Confidence 00000000111222222211111 0334444444444433322211110
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcc---cCCCCcce
Q 001321 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQ---TGSRNNVV 297 (1100)
Q Consensus 221 ~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~---~~~~~~~~ 297 (1100)
.+....| ++++.++++++.||++.+||...+....... .....+.
T Consensus 236 ------------------------------~~~~~~~-~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~~~~~~~~~~~~~- 283 (993)
T KOG1983|consen 236 ------------------------------LPNGQLE-SRDGSHFVSYHTDGSYAFWDVSSGKLQIARNPVPLVSLVPY- 283 (993)
T ss_pred ------------------------------ccccccC-ccCCceEEEEEecCCEEeeecCCCceeecCccccccccCCC-
Confidence 1111112 4789999999999999999999875422110 0000100
Q ss_pred eeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCC---cceEEEEEcCCccccccceeeeeeeecCCCcceeE
Q 001321 298 KLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGS---EEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADM 374 (1100)
Q Consensus 298 ~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~---~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~ 374 (1100)
+ |....+|.... ........++..|+...+. ..++++.. .+.... .. ....+..+
T Consensus 284 ------~----p~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~-----~~--~~~~~~~~ 341 (993)
T KOG1983|consen 284 ------G----PCKQINRILTE-LPRSGKPFWICQGGMPRGSYGDRHCVSVEH----DGTQVK-----LD--FTSSVIGL 341 (993)
T ss_pred ------C----hhhhhcccccc-cccccCcEEEecCCCccceecccceeEeec----CCceeE-----EE--EEecccce
Confidence 0 11111111111 1112222333334443322 12222221 100000 00 00011111
Q ss_pred EEccCCCC--CCCCCcceEEEE---ecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCC
Q 001321 375 ILLSSAGA--TVGNHKADLFVL---TSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGG 449 (1100)
Q Consensus 375 ~~~p~~~~--~~~~~~~~l~vl---~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~ 449 (1100)
.......+ .....+...+.+ .....+. ....+....++...-+.+.|++..+......
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~~~~~~~~~~~~~I~~~~~~~~~~~- 404 (993)
T KOG1983|consen 342 VGVTSEDPMSNFDANPNLVVLLEEELVPPDLQ----------------TLGIPSVSPPYLGSHHKSAITCLSLDGEVPT- 404 (993)
T ss_pred eeeecccccCccccCccceeccccccChhhhh----------------ccCCCcccchhccccCcceeeccccCCCccc-
Confidence 11100000 000011111100 0000000 1123344445555556666666665432111
Q ss_pred CchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceee
Q 001321 450 HSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQG 529 (1100)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~ 529 (1100)
..|.........+..+.. ....||..++.... .-.+...+..+++.|+.+++|+.....+..++.+.....-
T Consensus 405 ---~~~~~~~~~~~~~~~~~~-~~~s~~~v~~~~~~----~~~~~~~~g~~~~~d~~~~~~~~~~~s~~~~~~~~~~~~~ 476 (993)
T KOG1983|consen 405 ---MLYPSGLAAGNAQSVPPV-SALSWPIVGGRLLQ----SAPKLLEIGLTGHEDSTVSFLDAGGPSLRPLYKLDTRSAF 476 (993)
T ss_pred ---cccccccccccccCCCch-hccccceeeceecc----cCccceeecccccccceeeEEeccccccchhhhhcccccc
Confidence 112222222222221111 45566666655322 2345555777889999999999888777666655543221
Q ss_pred e-------eecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCC---Cc-------------eee
Q 001321 530 I-------EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETK---SE-------------VHA 586 (1100)
Q Consensus 530 ~-------~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~---~~-------------~~~ 586 (1100)
. -.......+....+|+-...+++++..+.+....+.....+....+..... .+ ...
T Consensus 477 ~t~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 556 (993)
T KOG1983|consen 477 LTDGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTLELTDSIVTGAVSFFCADLNQDVSVFKWKGHDRLSPRSNP 556 (993)
T ss_pred ccCCcCCcccccccccCCcchhcccccccccccccceeeeeeecccccccceeeeehhhhhccccccccCchhccccccc
Confidence 0 011223356667788888888888888888887776654333322221110 00 000
Q ss_pred ccCCCcceeEEE-----------------EeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC---C
Q 001321 587 LPEGKISLCRAV-----------------FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS---G 646 (1100)
Q Consensus 587 i~~~~~~~~~~~-----------------~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~---~ 646 (1100)
+....++++... +..-....++.-+..+-..+..++.++...+-+.++...++...... .
T Consensus 557 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~g~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~ 636 (993)
T KOG1983|consen 557 LSLPDGFQPFVDVQDRPPAGVTQGTLASGWILVKEGTVSGIGLSDIPSVNVCTLDPNLILGDERGLSRVKNLKKSLRLSF 636 (993)
T ss_pred cCCCCccccceEEEecCCcceeeeccccceeccccceeeeeeccccceeeeccCCccceeccCCCceeEeeccCchhhhh
Confidence 000111111111 11112222222222233467788888888888888777765444321 1
Q ss_pred CCCCeEEEEEe--ecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEe
Q 001321 647 SSSPIISMTWT--EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI 724 (1100)
Q Consensus 647 ~~~~V~sl~fs--~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~ 724 (1100)
-+.....+.+. .++.+ ++.....+++++.|....+. +.|...+ .+....-
T Consensus 637 r~~~~~~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-----------i~p~~~~-~~~~~~~ 688 (993)
T KOG1983|consen 637 RSIRPSRVSLTGSEYGLD----------------GVSSILPVEGTDRGELIGFK-----------ILPVSRG-RFSAKAE 688 (993)
T ss_pred ccCCCceEecccceeccC----------------chhhhhhcchhhccccccce-----------ecccccc-ccccccc
Confidence 22233333333 22222 33345666777766665555 5555544 3322222
Q ss_pred cccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecCeeEEEecccceee--
Q 001321 725 EPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQK-- 802 (1100)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~~vrl~sl~~~~~~-- 802 (1100)
+......++.. ..+..+.+.+.......+..+...+.++++|+|+.+|+|+++.+.++
T Consensus 689 ~s~~~~~~~~~--------------------~~~~~~~~~s~~~s~~~~~~~~~~~~~~~i~~e~~~~v~~~~~q~~~~~ 748 (993)
T KOG1983|consen 689 DSLVNITSSLY--------------------SAITLASDSSISSSLQGISYALAIEVPTLICGESAIRVFSVPAQQCKEL 748 (993)
T ss_pred cCCCccccchh--------------------hhcchhhccCccccccccccccccccceEEecCCccceecccccccccc
Confidence 21111000000 01111111111212234445555689999999999999999999771
Q ss_pred ---cc--cccccceeeeeecCCc-eEEEEEEEecCcEEEeecCChhhhhhccccceeeeeeccccccc-eeec-CCcEEE
Q 001321 803 ---VK--HKNRCCWASTIEKDEK-VCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKT-ISAD-NGQITL 874 (1100)
Q Consensus 803 ---~~--~~~~c~~~~~~~~~~~-~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~-~~~s-~gq~~l 874 (1100)
.. ....++|.. -.+ ..+++|++.+|+|++++||+|+++....+---+.+++..++.++ -+|+ .++..+
T Consensus 749 ~~~~~~~~~~~~~~~~----i~~~~~~l~~~~~~g~i~~~slp~Lre~~~~v~~lp~~~~~i~~~~~~~~g~~~~~~~~~ 824 (993)
T KOG1983|consen 749 QLIHEAPVVGISVLDG----ISKPEPSLDLLDANGHISKHSLPSLREEQFKVLPLPLVKNIIKNKLTAGNGFSVHKVGEL 824 (993)
T ss_pred eeeccccceeeeeeec----ccCccceeeEeecCCCccceecchhhhhhccccCCcchhhhcccchhccccccccchhhe
Confidence 11 112445544 233 79999999999999999999999987777666778888888654 3577 787655
Q ss_pred Ecc-eeEEEEEeecCCCcccccC----CCccchhhhhHHHhhhccccCcchhccccccCccccceecccccccccccCCC
Q 001321 875 ANG-SEVAFVNLLAGENEFSILE----SSPCLHDKVLEAAAAAAFNVSSNQKKKQTTAAGILGGIVKGFRGEKMIHTLDD 949 (1100)
Q Consensus 875 ~~g-~e~~~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1100)
... .|+.-. ++.++.+..+.+ +++.++.+.+.+.+. .+| ++|.|+ ++|+...++..
T Consensus 825 ~~s~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~----~~~~g~---l~~g~~~~~~~- 885 (993)
T KOG1983|consen 825 AASAVERSKK-TLEQELQELTNLGDISVLGLPLLKLEIPYAP----------IRQ----SDIKGV---LFFGTVGCDPY- 885 (993)
T ss_pred ecchhhhhhc-cccccccccccccccccccccccchhhhhhh----------hhc----cccccc---cccCcCCCChh-
Confidence 555 777765 788899999999 777777665554322 223 555543 55555333222
Q ss_pred CCCCcCchhhhccccCCCCCCCCCCCCCCCcccccccccccCCCCCCCCcCCcccccccchhhhhhhhhccCCCCCCCCC
Q 001321 950 SIDPKSSFSQLGGIFSRPPFPDLSPAATNNEEIELNIDDIEIDEPPSMMATSSHEVTNTKKEKLSERERLLGVPDDAKPR 1029 (1100)
Q Consensus 950 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1100)
++.||..++|.++.+.+..+..+....+ ++.. .+.
T Consensus 886 ------------------------------~i~~l~~e~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~ 920 (993)
T KOG1983|consen 886 ------------------------------KISELEGERISLATKYEVVPISSGDVSS-RSSA--------------RAI 920 (993)
T ss_pred ------------------------------hhcccccccccccccceeeccccccCCc-cccc--------------ccc
Confidence 2667888999999888777755543333 1111 122
Q ss_pred CCCHHHHHHHhccCCChhH--HHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhccccccC
Q 001321 1030 LRTREEIIAKYRKAEDASS--VAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWKI 1100 (1100)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1100 (1100)
....+.+..+|+.+.+.++ ++.+|+++|+||+|||+++|+||++|+++|++|+++|||++.+++.||||||
T Consensus 921 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~~~f 993 (993)
T KOG1983|consen 921 LGPPDGEEPKYAQASGVSSGSAASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKWYDF 993 (993)
T ss_pred cCCCcccchhhcccccccccchhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhccC
Confidence 2333455667777877665 9999999999999999999999999999999999999999999999999997
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=312.71 Aligned_cols=481 Identities=15% Similarity=0.168 Sum_probs=322.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
-...++|++-+|+.-+||+|-.||.|+||+....+ .+...+|+.+|+.+.|...|.+|+|++.|+.|.|||+-...-+.
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 34689999999999999999999999999996544 45667999999999999999999999999999999998887766
Q ss_pred ee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 113 ~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
.+ .|...|+-+-|..+.+++++.+.|+.|++|+++++... ++.-.|. +.|+++++++ +
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf-----~Thvd~r------------~Eiw~l~~~~----~ 202 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCF-----ETHVDHR------------GEIWALVLDE----K 202 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceee-----eEEeccc------------ceEEEEEEec----c
Confidence 66 78899999999999999999999999999999863221 2233444 7899999955 5
Q ss_pred EEEEEEcCCEEEEEEccCC-------EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 192 RVLIAYENALVILWDVSEA-------QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~-------~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
+++++..|+.+.+|++... +....... +...+ ...++...+.. .+++++
T Consensus 203 ~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~-G~~~r----------------------qsk~R~i~l~~-d~s~r~ 258 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWELAFEDDEKETNRYISTKLR-GTFIR----------------------QSKGREINLVT-DFSDRF 258 (888)
T ss_pred eEEEEecCCceEEEEeecccccccccccceeecc-ceeee----------------------ccCCceeEEee-cCcccE
Confidence 7999999999999999321 11110000 00000 00333444443 377778
Q ss_pred EEEEEcCCcEEEEecCCCCCCC-------------CcccC--------------------CCCcceeeeccc-cCCCcce
Q 001321 265 LAVGYIDGDILLWNTSTTASTK-------------GQQTG--------------------SRNNVVKLELSS-AERRLPV 310 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~-------------~~~~~--------------------~~~~~~~l~~~~-~~~~~~i 310 (1100)
+++-+.|..+.++.+.+.+... +.... ....+..+.+.. .......
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence 8888888888888775543000 00000 000000000000 0000000
Q ss_pred -----EEEEecc-------------------------cccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceee
Q 001321 311 -----IVLHWST-------------------------NKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1100)
Q Consensus 311 -----~~~~w~~-------------------------~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~ 360 (1100)
..++|.+ ..++..+.+..++.+|+.+ -+.+|....+..+
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~--------SikiWn~~t~kci--- 407 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE--------SIKIWNRDTLKCI--- 407 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCC--------cEEEEEccCccee---
Confidence 0111111 1112244444555555444 3445544432222
Q ss_pred eeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEE
Q 001321 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1100)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~ 440 (1100)
+. ++.. -+....+.|... .+++.+.+|++.+||..+...
T Consensus 408 RT--i~~~-y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~l------------------------------ 446 (888)
T KOG0306|consen 408 RT--ITCG-YILASKFVPGDR--------YIVLGTKNGELQVFDLASASL------------------------------ 446 (888)
T ss_pred EE--eccc-cEEEEEecCCCc--------eEEEeccCCceEEEEeehhhh------------------------------
Confidence 11 1111 344445555432 567778888888887322111
Q ss_pred EEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCC-----C
Q 001321 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY-----P 515 (1100)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~-----~ 515 (1100)
.+ ....|.+.+..++.+||+.-++||+.|.+|++||..- +
T Consensus 447 ---------------~E--------------------ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g 491 (888)
T KOG0306|consen 447 ---------------VE--------------------TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG 491 (888)
T ss_pred ---------------hh--------------------hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence 00 0112233344557889999999999999999999641 1
Q ss_pred ceeEEeeec-cceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcce
Q 001321 516 VFKLICALD-AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1100)
Q Consensus 516 ~l~~~~~l~-~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 594 (1100)
.......++ .+. .++ ...|.|+++|||+++||++-.|.+|+||-+++- .
T Consensus 492 t~~k~lsl~~~rt--Lel---~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-------------------------K 541 (888)
T KOG0306|consen 492 TQKKVLSLKHTRT--LEL---EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-------------------------K 541 (888)
T ss_pred ccceeeeeccceE--Eec---cccEEEEEEcCCCcEEEEEeccCeEEEEEecce-------------------------e
Confidence 111111111 111 112 247999999999999999999999999999885 2
Q ss_pred eEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCC
Q 001321 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1100)
Q Consensus 595 ~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~ 674 (1100)
..+.+.+|.-||.++.+|||++++++|+.|.+|+||-+.-+.+- ..+.+|.+.|.++.|-+
T Consensus 542 FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAHdDSvm~V~F~P---------------- 602 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAHDDSVMSVQFLP---------------- 602 (888)
T ss_pred eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcccCceeEEEEcc----------------
Confidence 46778999999999999999999999999999999999988775 33347999999999984
Q ss_pred CCCCCCCceEEEEEecceeEEEEeCCC
Q 001321 675 EVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1100)
Q Consensus 675 ~~~~~~~~~lL~~gt~dg~v~v~d~~~ 701 (1100)
.+.+.|++++||.|.-||++.
T Consensus 603 ------~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 603 ------KTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred ------cceeEEEecCcceEEeechhh
Confidence 346799999999999999554
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-31 Score=295.02 Aligned_cols=473 Identities=15% Similarity=0.206 Sum_probs=345.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE---------EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEE
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~---------~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~ 101 (1100)
|+-+..++.|+.|||+|+++|+|. .+.+.||..++.-. ....+|-..|+++.|+.|.++|++++.|-+++
T Consensus 92 ~f~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r 170 (893)
T KOG0291|consen 92 RFNFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR 170 (893)
T ss_pred EEeecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE
Confidence 356788999999999999999997 57899998754322 24467888999999999999999999999999
Q ss_pred EEEcCCCceeeee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCC-----------------------eeee
Q 001321 102 VWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG-----------------------KLFQ 155 (1100)
Q Consensus 102 vWd~~s~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~-----------------------~l~~ 155 (1100)
+|++...+-+..+ .|...|-++-|..+...+++-+.||.+.+|.++.... +...
T Consensus 171 l~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~ 250 (893)
T KOG0291|consen 171 LFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHK 250 (893)
T ss_pred EEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcc
Confidence 9999876553332 7888999999999999999999999999999982100 0000
Q ss_pred ec-eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCC
Q 001321 156 LP-YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1100)
Q Consensus 156 ~~-~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~ 234 (1100)
.- ++...|++.+ ....|++.+||| .-+.|++|+++|...+|.+..-.++.... +.
T Consensus 251 ~~~~k~~k~~ln~-------~~~kvtaa~fH~--~t~~lvvgFssG~f~LyelP~f~lih~LS---------is------ 306 (893)
T KOG0291|consen 251 IFWYKTKKHYLNQ-------NSSKVTAAAFHK--GTNLLVVGFSSGEFGLYELPDFNLIHSLS---------IS------ 306 (893)
T ss_pred eEEEEEEeeeecc-------cccceeeeeccC--CceEEEEEecCCeeEEEecCCceEEEEee---------cc------
Confidence 00 1111222111 116799999999 45668999999999999999987765442 21
Q ss_pred CCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC-CcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEE
Q 001321 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1100)
Q Consensus 235 ~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D-G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1100)
+..|..+.|. ..|++|+.||.. |.|.+|+..+.. -+.+.+ .+ ...+..
T Consensus 307 --------------~~~I~t~~~N-~tGDWiA~g~~klgQLlVweWqsEs-----------YVlKQQ--gH--~~~i~~- 355 (893)
T KOG0291|consen 307 --------------DQKILTVSFN-STGDWIAFGCSKLGQLLVWEWQSES-----------YVLKQQ--GH--SDRITS- 355 (893)
T ss_pred --------------cceeeEEEec-ccCCEEEEcCCccceEEEEEeeccc-----------eeeecc--cc--ccceee-
Confidence 6789999986 789999999875 899999986542 111111 11 111222
Q ss_pred EecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeec-CCCcceeEEEccCCCCCCCCCcceEE
Q 001321 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT-LTGSFADMILLSSAGATVGNHKADLF 392 (1100)
Q Consensus 314 ~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~-~~~~v~d~~~~p~~~~~~~~~~~~l~ 392 (1100)
++.++||+++++|++|+ -+++|.+..-..+ ..+. +...+..+.+.... ..++
T Consensus 356 -------l~YSpDgq~iaTG~eDg-------KVKvWn~~SgfC~-----vTFteHts~Vt~v~f~~~g--------~~ll 408 (893)
T KOG0291|consen 356 -------LAYSPDGQLIATGAEDG-------KVKVWNTQSGFCF-----VTFTEHTSGVTAVQFTARG--------NVLL 408 (893)
T ss_pred -------EEECCCCcEEEeccCCC-------cEEEEeccCceEE-----EEeccCCCceEEEEEEecC--------CEEE
Confidence 34788999999999998 6777765422111 2222 23356666665543 3677
Q ss_pred EEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccC
Q 001321 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1100)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1100)
..+-+|.+..||...-..+-.
T Consensus 409 ssSLDGtVRAwDlkRYrNfRT----------------------------------------------------------- 429 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRT----------------------------------------------------------- 429 (893)
T ss_pred EeecCCeEEeeeecccceeee-----------------------------------------------------------
Confidence 778889999988432222111
Q ss_pred cccccccCCcccccCccccCCCCcEEEEEecCCc-EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeE
Q 001321 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1100)
Q Consensus 473 ~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGt-IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~L 551 (1100)
.+...+...++++..|.|.+++.|..|.. |.||++.+|.+. -.+.+|.+||.+|+|+|++..|
T Consensus 430 -----ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll-----------DiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 430 -----FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL-----------DILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred -----ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee-----------ehhcCCCCcceeeEEccccCeE
Confidence 12222333456677788999999998885 999999999876 3388999999999999999999
Q ss_pred EEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 552 asg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
|+|+.|.+||+|++-..... +.-..+..-|++++|+|+|+-|||++-||.|.+||
T Consensus 494 aS~SWDkTVRiW~if~s~~~-------------------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSSGT-------------------------VETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred EeccccceEEEEEeeccCce-------------------------eeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99999999999998765321 11235677899999999999999999999999999
Q ss_pred cCCceEEEEeecCC-----------------CCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeE
Q 001321 632 MNLLSVLFFTDDIS-----------------GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 694 (1100)
Q Consensus 632 ~~~~~~~~~~~~~~-----------------~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v 694 (1100)
.........+.... ....+.+.|+|+.++ .++++|+....|
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG----------------------~~IlAgG~sn~i 606 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADG----------------------KCILAGGESNSI 606 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCC----------------------CEEEecCCcccE
Confidence 98766553322211 123567778877544 559999999999
Q ss_pred EEEeCCCCccccCC
Q 001321 695 SIVGGSSENMISSS 708 (1100)
Q Consensus 695 ~v~d~~~g~~l~~~ 708 (1100)
|+|+..+|.++..-
T Consensus 607 CiY~v~~~vllkkf 620 (893)
T KOG0291|consen 607 CIYDVPEGVLLKKF 620 (893)
T ss_pred EEEECchhheeeeE
Confidence 99999888876543
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-29 Score=269.03 Aligned_cols=496 Identities=14% Similarity=0.136 Sum_probs=305.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce-eee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL-ACC 113 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~-l~~ 113 (1100)
+....+..+|.+.-++-. ....|.+-+++..+ +..-.+|..+++-..|+|.|-|++|++..|.|+|||...... +..
T Consensus 19 g~~~~ig~dpkgd~ilY~-nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn 97 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYT-NGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN 97 (603)
T ss_pred CcceEeccCCCCCeEEEe-CCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence 355678889998877655 35678888886554 446678999999999999999999999999999999988543 322
Q ss_pred -e-ecCCCeEEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 114 -L-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 114 -~-~~~~~Vt~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+ ...++|..++|+++++++++.++. |.+..||-.. -.. .+.+|. ..|.++.|-|+
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~----SvG---ei~GhS------------r~ins~~~Kps 158 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN----SVG---EITGHS------------RRINSVDFKPS 158 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC----ccc---eeeccc------------eeEeeeeccCC
Confidence 2 556999999999999987766542 4444444332 221 155666 78999999997
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
. .-|++++++|++|.+|.-.--+.... ..| .+-|.|+.|. |||.+++
T Consensus 159 R-PfRi~T~sdDn~v~ffeGPPFKFk~s~r~H------------------------------skFV~~VRys-PDG~~Fa 206 (603)
T KOG0318|consen 159 R-PFRIATGSDDNTVAFFEGPPFKFKSSFREH------------------------------SKFVNCVRYS-PDGSRFA 206 (603)
T ss_pred C-ceEEEeccCCCeEEEeeCCCeeeeeccccc------------------------------ccceeeEEEC-CCCCeEE
Confidence 4 44699999999999987544333322 222 7789999985 9999999
Q ss_pred EEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEE
Q 001321 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl 346 (1100)
+++.||.+.+||-.+++.. ..+.. ...+...|..+.|+. |+..+++.+.+. ..
T Consensus 207 t~gsDgki~iyDGktge~v-----------g~l~~-~~aHkGsIfalsWsP--------Ds~~~~T~SaDk-------t~ 259 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKV-----------GELED-SDAHKGSIFALSWSP--------DSTQFLTVSADK-------TI 259 (603)
T ss_pred EecCCccEEEEcCCCccEE-----------EEecC-CCCccccEEEEEECC--------CCceEEEecCCc-------eE
Confidence 9999999999999988432 22221 222445677777754 334455554444 55
Q ss_pred EcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccC
Q 001321 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1100)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1100)
++|.-.....+ ..++....+.|+..-.- -....++.+.-+|.+..++..... .
T Consensus 260 KIWdVs~~slv-----~t~~~~~~v~dqqvG~l------Wqkd~lItVSl~G~in~ln~~d~~----------------~ 312 (603)
T KOG0318|consen 260 KIWDVSTNSLV-----STWPMGSTVEDQQVGCL------WQKDHLITVSLSGTINYLNPSDPS----------------V 312 (603)
T ss_pred EEEEeeccceE-----EEeecCCchhceEEEEE------EeCCeEEEEEcCcEEEEecccCCC----------------h
Confidence 66644332111 11222222222221000 001245666666776665532221 1
Q ss_pred CcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCccccc-------CccccCC-CCcEE
Q 001321 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPV-------PITKCHS-VDRVY 498 (1100)
Q Consensus 427 p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~-------~~~~~s~-~~~~l 498 (1100)
+..+.-|...||+......... .++. .....-..|-...|+...+ ....+.. ....|
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~-i~Sg--------------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKT-IYSG--------------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred hheecccccceeEEEEcCCCCE-EEee--------------ccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 2222223344444443321100 0000 0001112222222221111 0001111 11333
Q ss_pred EEEecCCcEEEeeCCCCceeE------------Eeeeccc-e------eee-eec--------CCCCCeeEEEEeeCCCe
Q 001321 499 LAGYHDGSVRIWDATYPVFKL------------ICALDAE-V------QGI-EVA--------GSRAPVSTLSFCFINSS 550 (1100)
Q Consensus 499 ~Tg~~DGtIriWd~~~~~l~~------------~~~l~~~-~------~~~-~l~--------~h~~~Vt~lafspd~~~ 550 (1100)
+|.+.|.++|+-++....+.. +...... . .++ .+. .-....++++++|++.+
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 444444444444332111100 0000000 0 000 011 23356778999999999
Q ss_pred EEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001321 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1100)
Q Consensus 551 Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vw 630 (1100)
+|+|+.||.|+||.+...... .......|.++||+++||||+.+||+|+..+.|.+|
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~-----------------------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELK-----------------------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred EEEecccceEEEEEecCCccc-----------------------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 999999999999999885321 134567899999999999999999999999999999
Q ss_pred ecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 631 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 631 D~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
|+.+..+. ...+.-|.+.|.+|+|++.. .+|++|+-|-+|.+|+.
T Consensus 515 d~~s~~~~--~~~w~FHtakI~~~aWsP~n----------------------~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 515 DVASREVK--TNRWAFHTAKINCVAWSPNN----------------------KLVATGSLDTNVIIYSV 559 (603)
T ss_pred EcccCcee--cceeeeeeeeEEEEEeCCCc----------------------eEEEeccccceEEEEEc
Confidence 99998873 22223499999999999554 56999999999999993
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=289.14 Aligned_cols=282 Identities=16% Similarity=0.182 Sum_probs=240.1
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecC
Q 001321 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
.+-..||..+.|+.|+..|++++-+|.++||+..+...+.++ .|.+.|.++.|+|. +.-|++++.||+|++|+++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 345679999999999999999999999999999999888777 89999999999998 458999999999999999864
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCccccccccc
Q 001321 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVV 228 (1100)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~ 228 (1100)
+..+ .+.+|. ..|..++||| .|++|++++.|.+-++||+.++.. ....||
T Consensus 252 --~~l~---~l~gH~------------~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGH---------- 302 (459)
T KOG0272|consen 252 --TPLQ---DLEGHL------------ARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGH---------- 302 (459)
T ss_pred --cchh---hhhcch------------hhheeeeecC--CCceeeecccccchhhcccccchhhHhhccc----------
Confidence 3332 267766 8899999999 699999999999999999999854 556677
Q ss_pred CCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCc
Q 001321 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1100)
Q Consensus 229 ~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (1100)
.+.|.+++|. +||..++||+.|..=++||+.++..+
T Consensus 303 --------------------s~~v~~iaf~-~DGSL~~tGGlD~~~RvWDlRtgr~i----------------------- 338 (459)
T KOG0272|consen 303 --------------------SKGVFSIAFQ-PDGSLAATGGLDSLGRVWDLRTGRCI----------------------- 338 (459)
T ss_pred --------------------ccccceeEec-CCCceeeccCccchhheeecccCcEE-----------------------
Confidence 8899999997 99999999999999999999876100
Q ss_pred ceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCc
Q 001321 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1100)
Q Consensus 309 ~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~ 388 (1100)
++..
T Consensus 339 ---------------------m~L~------------------------------------------------------- 342 (459)
T KOG0272|consen 339 ---------------------MFLA------------------------------------------------------- 342 (459)
T ss_pred ---------------------EEec-------------------------------------------------------
Confidence 0000
Q ss_pred ceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCC
Q 001321 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1100)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1100)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee-C
Q 001321 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-I 547 (1100)
Q Consensus 469 ~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp-d 547 (1100)
||..++..+.|+|+|..+|||+.|+++||||+...... ..+.+|..-|+.+.|+| .
T Consensus 343 ------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l-----------y~ipAH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 343 ------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL-----------YTIPAHSNLVSQVKYSPQE 399 (459)
T ss_pred ------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccc-----------eecccccchhhheEecccC
Confidence 11112223368899999999999999999999876643 34678999999999999 7
Q ss_pred CCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceE
Q 001321 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRV 627 (1100)
Q Consensus 548 ~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V 627 (1100)
|.+|++++.|++++||.-.+. +++.++.+|.+.|-+|++++++.++++++.|.++
T Consensus 400 g~fL~TasyD~t~kiWs~~~~-------------------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTW-------------------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred CeEEEEcccCcceeeecCCCc-------------------------ccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence 889999999999999986653 6788899999999999999999999999999999
Q ss_pred EEEe
Q 001321 628 AVLD 631 (1100)
Q Consensus 628 ~vwD 631 (1100)
++|.
T Consensus 455 KLW~ 458 (459)
T KOG0272|consen 455 KLWR 458 (459)
T ss_pred eecc
Confidence 9995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-29 Score=278.96 Aligned_cols=586 Identities=15% Similarity=0.185 Sum_probs=375.9
Q ss_pred CCCEEEEEECCCeEEEEeCCCc---eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeE
Q 001321 46 IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNIT 121 (1100)
Q Consensus 46 ~~~lLA~gs~dG~I~vw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt 121 (1100)
.|+++|+ +..-.|-+||+... ..+.....+.+|++++-++|..+|+.+-.||.|++||..++..+.++ .|...|+
T Consensus 33 ~Gr~va~-~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAV-SALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEE-eccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 4677665 33467999999766 33444456679999999999888888999999999999999877776 7899999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCE
Q 001321 122 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1100)
Q Consensus 122 ~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~ 201 (1100)
++.|+..|..+++|+.|+.|-+||+-.+.|. |++.+|. ..|+...|.. ....+++.+.|+.
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-----~rL~GHk------------d~iT~~~F~~--~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-----FRLRGHK------------DSITQALFLN--GDSFLVSVSKDSM 172 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccceee-----EEeecch------------HHHhHHhccC--CCeEEEEeccCce
Confidence 9999999999999999999999998866555 4588887 8888888844 4566899999999
Q ss_pred EEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 202 VILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 202 V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
|++||+.+..+. .+..| ++.+.+++.. + +.+++++.|+.+++|++.
T Consensus 173 iK~WdL~tqhCf~Thvd~------------------------------r~Eiw~l~~~-~--~~lvt~~~dse~~v~~L~ 219 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDH------------------------------RGEIWALVLD-E--KLLVTAGTDSELKVWELA 219 (888)
T ss_pred EEEEecccceeeeEEecc------------------------------cceEEEEEEe-c--ceEEEEecCCceEEEEee
Confidence 999999998764 45556 8889999965 4 789999999999999994
Q ss_pred CCCCCCCcc-cCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC---Ccccccc
Q 001321 281 TTASTKGQQ-TGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE---WSSGMEN 356 (1100)
Q Consensus 281 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~---~~~~~~~ 356 (1100)
.......-. .........+.. .....++..+ .+.+++++++-|.+. ++.+- ...+...
T Consensus 220 ~~~D~~~~~~~~s~~~~G~~~r--qsk~R~i~l~---------~d~s~r~~~c~g~d~-------~~e~frI~s~~E~~k 281 (888)
T KOG0306|consen 220 FEDDEKETNRYISTKLRGTFIR--QSKGREINLV---------TDFSDRFLVCQGADK-------VIELFRIRSKEEIAK 281 (888)
T ss_pred cccccccccccceeeccceeee--ccCCceeEEe---------ecCcccEEEEecchh-------hhhheeecCHHHHHH
Confidence 332111000 000000011111 1111222222 556677888776665 33221 1000000
Q ss_pred -----ceeeee----------------------eeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCcee
Q 001321 357 -----LRCVSR----------------------VDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLT 409 (1100)
Q Consensus 357 -----~~~~~~----------------------~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~ 409 (1100)
++...+ -.......+.++.+.|... .+.. +++..+..+..|..
T Consensus 282 ~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~-----~~~~-lv~l~nNtv~~ysl---- 351 (888)
T KOG0306|consen 282 ILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG-----TENT-LVLLANNTVEWYSL---- 351 (888)
T ss_pred HHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC-----ccee-EEEeecCceEEEEe----
Confidence 000000 0111223455666666532 2222 23333334444331
Q ss_pred EeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccC-----CCCchhhHhHHHhhccccCCCcccCcccccccCCccc
Q 001321 410 TLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPF-----GGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPS 484 (1100)
Q Consensus 410 ~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~ 484 (1100)
.........+..........|++.+....+..... .+...+.|+.-.-. .+ ..++-|
T Consensus 352 ---~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~k------ci------RTi~~~--- 413 (888)
T KOG0306|consen 352 ---ENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLK------CI------RTITCG--- 413 (888)
T ss_pred ---ccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcc------ee------EEeccc---
Confidence 11111111223334456677888888777754321 11222233221000 00 001111
Q ss_pred ccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEE
Q 001321 485 PVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1100)
Q Consensus 485 ~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~ 564 (1100)
-+.+..|-|..+++++|..+|.+.++|+....+. -....|.++|+.|+.+||+..+++|+.|.+|++|+
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~-----------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLV-----------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWD 482 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhh-----------hhhhccccceeeeeecCCCCceEEecCCcEEEEEe
Confidence 2233468899999999999999999999887755 34668999999999999999999999999999999
Q ss_pred ecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecC
Q 001321 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1100)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~ 644 (1100)
+.-.... +.+.+.+-.+++ ...-.....|.|+++||||++||+|--|.+|.||-+.+-+.- -.+
T Consensus 483 f~l~~~~------~gt~~k~lsl~~-------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf---lsL 546 (888)
T KOG0306|consen 483 FKLVVSV------PGTQKKVLSLKH-------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF---LSL 546 (888)
T ss_pred EEEEecc------Ccccceeeeecc-------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee---eee
Confidence 8643110 001111111111 011234678999999999999999999999999999977654 234
Q ss_pred CCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEe
Q 001321 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVI 724 (1100)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~ 724 (1100)
.||.-||.|++.+ |++.++++|+.|.+|.+|-.+=|+.--+ +.....+ ...++++
T Consensus 547 YGHkLPV~smDIS----------------------~DSklivTgSADKnVKiWGLdFGDCHKS--~fAHdDS-vm~V~F~ 601 (888)
T KOG0306|consen 547 YGHKLPVLSMDIS----------------------PDSKLIVTGSADKNVKIWGLDFGDCHKS--FFAHDDS-VMSVQFL 601 (888)
T ss_pred cccccceeEEecc----------------------CCcCeEEeccCCCceEEeccccchhhhh--hhcccCc-eeEEEEc
Confidence 6899999999998 5567799999999999999655543211 1111111 2222222
Q ss_pred cccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEeccccee-e
Q 001321 725 EPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ-K 802 (1100)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~~-~ 802 (1100)
++ ..++++|+.| .++-|+-.+-.. +
T Consensus 602 -------------------------------------------------P~----~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 602 -------------------------------------------------PK----THLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred -------------------------------------------------cc----ceeEEEecCcceEEeechhhhhhhe
Confidence 12 7789999988 999998776644 1
Q ss_pred cc---ccc-ccceeeeeecCCceEEEEEEEecCcEEEeecCC
Q 001321 803 VK---HKN-RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD 840 (1100)
Q Consensus 803 ~~---~~~-~c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~ 840 (1100)
+. ... .| .+- .+.+..++..-.|-.||+|+--+
T Consensus 629 ~L~~H~~ev~c-Lav----~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 629 KLDGHHSEVWC-LAV----SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeccchheeee-eEE----cCCCCeEEeccCCceeEeeeccC
Confidence 11 111 33 221 23566677667777888888777
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=282.53 Aligned_cols=284 Identities=19% Similarity=0.212 Sum_probs=241.6
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
....+|..+.|+.+++.+++|+.+|.++||..+. ..+. .++.+|. ..|.++.|||.+++..++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~---~~l~gH~------------~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLL---QTLRGHT------------SRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--ccee---EEEeccc------------cceeeEEEccCCCcccee
Confidence 3457899999999999999999999999999875 3444 3488887 899999999985565699
Q ss_pred EEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc
Q 001321 195 IAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~ 273 (1100)
+++.||+|++|++++...+ .+.+| ..+|..++|+ |+|++|+|+|.|.+
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH------------------------------~~RVs~VafH-PsG~~L~TasfD~t 284 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGH------------------------------LARVSRVAFH-PSGKFLGTASFDST 284 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcc------------------------------hhhheeeeec-CCCceeeecccccc
Confidence 9999999999999997554 45566 7889999987 99999999999999
Q ss_pred EEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccc
Q 001321 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1100)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~ 353 (1100)
-++||+.++....
T Consensus 285 WRlWD~~tk~ElL------------------------------------------------------------------- 297 (459)
T KOG0272|consen 285 WRLWDLETKSELL------------------------------------------------------------------- 297 (459)
T ss_pred hhhcccccchhhH-------------------------------------------------------------------
Confidence 9999997651100
Q ss_pred cccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccC
Q 001321 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1100)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 433 (1100)
T Consensus 298 -------------------------------------------------------------------------------- 297 (459)
T KOG0272|consen 298 -------------------------------------------------------------------------------- 297 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCC
Q 001321 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1100)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~ 513 (1100)
+..||...+..++|++||.+++||+.|..=||||+.
T Consensus 298 --------------------------------------------~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 298 --------------------------------------------LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred --------------------------------------------hhcccccccceeEecCCCceeeccCccchhheeecc
Confidence 111232333444788999999999999999999999
Q ss_pred CCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcc
Q 001321 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1100)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 593 (1100)
++.+. +-+.+|..+|..|+|+|+|-.||+|+.|++++|||++...
T Consensus 334 tgr~i-----------m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~------------------------ 378 (459)
T KOG0272|consen 334 TGRCI-----------MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS------------------------ 378 (459)
T ss_pred cCcEE-----------EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc------------------------
Confidence 99877 5688999999999999999999999999999999998862
Q ss_pred eeEEEEeecCcCeEEEEEcC-CCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCC
Q 001321 594 LCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHS 672 (1100)
Q Consensus 594 ~~~~~~~~h~~~VtsLafSp-~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~ 672 (1100)
++..+.+|..-|+.++|+| .|.+|++++.|+++.||..++...+ ..+.||.+.|.+++.+.++
T Consensus 379 -~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~---ksLaGHe~kV~s~Dis~d~------------ 442 (459)
T KOG0272|consen 379 -ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL---KSLAGHEGKVISLDISPDS------------ 442 (459)
T ss_pred -cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc---hhhcCCccceEEEEeccCC------------
Confidence 3456679999999999998 7899999999999999999998887 5667899999999998555
Q ss_pred CCCCCCCCCceEEEEEecceeEEEEe
Q 001321 673 EREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 673 ~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
..+++++.|.++.+|.
T Consensus 443 ----------~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 ----------QAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------ceEEEeccCceeeecc
Confidence 4499999999999996
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=7.2e-30 Score=282.07 Aligned_cols=601 Identities=14% Similarity=0.116 Sum_probs=355.9
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCC--cEEEEEcCCCc
Q 001321 35 PATASILAFDHIQRLLAIAT--LDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLESRS 109 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs--~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~--~I~vWd~~s~~ 109 (1100)
-.+++|+||+++|+++|+|- ....++||++..- .+..+.+|+..|++++|+|.+.|+++++... .|-|||++...
T Consensus 78 Rk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~ 157 (1080)
T KOG1408|consen 78 RKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS 157 (1080)
T ss_pred CcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc
Confidence 44799999999999999997 5578999999544 4556789999999999999999999999755 47789998887
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc--C
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP--N 187 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P--~ 187 (1100)
....-.-...|++++|+.++.|+++... ..|++|.++... +.. .|..+++ ++.....-+....+.|+..- .
T Consensus 158 ~~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~-Kyk-dpiPl~g----Rs~~lg~lr~n~f~avaCg~gic 230 (1080)
T KOG1408|consen 158 SGASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQS-KYK-DPIPLPG----RSYFLGNLRFNEFLAVACGVGIC 230 (1080)
T ss_pred cccccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccc-ccc-CCccccc----hhhhccccccchhhhhhhcCccc
Confidence 7777777889999999999999988764 458999998643 211 1222322 11111111111111111100 0
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
.+.+ +++ ...|.++-| ...+++-. ++.. +...-.|+| -+.++|++
T Consensus 231 Aest-fai-t~qGhLvEF--SsRRLLDK-----WVqc-----------------------RTTnAnCIc---Vs~r~I~c 275 (1080)
T KOG1408|consen 231 AEST-FAI-TAQGHLVEF--SSRRLLDK-----WVQC-----------------------RTTNANCIC---VSSRLIAC 275 (1080)
T ss_pred ccce-EEE-ecccceeee--chhhhhhh-----hhhh-----------------------hccccceee---eecceEEE
Confidence 1111 111 122221111 11111100 0000 133334555 45789999
Q ss_pred EEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEE
Q 001321 268 GYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLS 347 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~ 347 (1100)
||.+|.|++++.++......++....... .+..+ ..-.+++ .+....
T Consensus 276 gCa~g~vrlFnp~tL~y~~Tlpr~halg~------------d~a~~----------~q~~~~~-s~~~~a---------- 322 (1080)
T KOG1408|consen 276 GCAKGMVRLFNPETLDYAGTLPRSHALGS------------DTANL----------SQPEPKN-SESSPA---------- 322 (1080)
T ss_pred eeccceeeecCcchhhhcccccccccccc------------chhhc----------ccccccc-cccCcc----------
Confidence 99999999999887643332211100000 00000 0000000 000000
Q ss_pred cCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCC
Q 001321 348 LEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFP 427 (1100)
Q Consensus 348 l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p 427 (1100)
.++ ....+.|.+.. .-+..+.++-.+|+||.......-...
T Consensus 323 ----------------~fP---D~IA~~Fdet~--------~klscVYndhSlYvWDvrD~~kvgk~~------------ 363 (1080)
T KOG1408|consen 323 ----------------IFP---DAIACQFDETT--------DKLSCVYNDHSLYVWDVRDVNKVGKCS------------ 363 (1080)
T ss_pred ----------------cCC---ceeEEEecCCC--------ceEEEEEcCceEEEEecccccccccee------------
Confidence 000 11222232221 135556666777787744332211000
Q ss_pred cccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcE
Q 001321 428 GVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSV 507 (1100)
Q Consensus 428 ~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtI 507 (1100)
..-+|...|-.+...+ .|..-| +..+. |.+ -++|++.||+|
T Consensus 364 -s~lyHS~ciW~Ve~~p---------------------------~nv~~~---------~~acl-p~~-cF~TCSsD~TI 404 (1080)
T KOG1408|consen 364 -SMLYHSACIWDVENLP---------------------------CNVHSP---------TAACL-PRG-CFTTCSSDGTI 404 (1080)
T ss_pred -eeeeccceeeeecccc---------------------------ccccCc---------ccccC-Ccc-ceeEecCCCcE
Confidence 0000111111000000 000000 01012 222 38999999999
Q ss_pred EEeeCCCCceeEEee---eccceee-----------------------eeecCCCCCeeEEEEeeCCCeEEEEecCceEE
Q 001321 508 RIWDATYPVFKLICA---LDAEVQG-----------------------IEVAGSRAPVSTLSFCFINSSLAVGNEFGLVY 561 (1100)
Q Consensus 508 riWd~~~~~l~~~~~---l~~~~~~-----------------------~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~ 561 (1100)
|+||+..+.-..+|. +..++.. ...-+....|.+|+.+|++++||+|+..|+++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999988732221111 1111110 11235667899999999999999999999999
Q ss_pred EEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCC---CCEEEEEeCCceEEEEecCCceEE
Q 001321 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS---GAKLAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 562 lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~---g~~LavGs~dG~V~vwD~~~~~~~ 638 (1100)
||++....+ .....+|.+.|.+|.||.- .++||+|+.|..|.|||+.....+
T Consensus 485 Vy~Lq~l~~-------------------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 485 VYDLQELEY-------------------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred EEEehhhhh-------------------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 999987532 3445799999999999962 378999999999999999866544
Q ss_pred EEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe---CCCCccccCCccccCCC
Q 001321 639 FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG---GSSENMISSSPWHLKKK 715 (1100)
Q Consensus 639 ~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d---~~~g~~l~~~~i~~~~~ 715 (1100)
. +.+.+|++.|+++.|...+.. .-+++++.|.+|..=- ...|.+..+++- ....
T Consensus 540 ~--qtld~HSssITsvKFa~~gln--------------------~~MiscGADksimFr~~qk~~~g~~f~r~t~-t~~k 596 (1080)
T KOG1408|consen 540 V--QTLDGHSSSITSVKFACNGLN--------------------RKMISCGADKSIMFRVNQKASSGRLFPRHTQ-TLSK 596 (1080)
T ss_pred h--hhhcccccceeEEEEeecCCc--------------------eEEEeccCchhhheehhccccCceecccccc-cccc
Confidence 2 345689999999999976644 4577888887764321 112333333311 1111
Q ss_pred ceeEEEEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEE
Q 001321 716 VIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLY 794 (1100)
Q Consensus 716 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~ 794 (1100)
+ .|.-..+|. .-.|+++.|+| -||||
T Consensus 597 t-TlYDm~Vdp----------------------------------------------------~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 597 T-TLYDMAVDP----------------------------------------------------TSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred c-eEEEeeeCC----------------------------------------------------CcceEEEEecccceEEE
Confidence 1 111111111 14456655555 99999
Q ss_pred ecccceeecccc------c-ccceeeeeecCCceEEEEEEEecCcEEEeecCChhhhhhccccceeeeeeccccccceee
Q 001321 795 SRKSVIQKVKHK------N-RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISA 867 (1100)
Q Consensus 795 sl~~~~~~~~~~------~-~c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 867 (1100)
.+.+.+|++.+- . ..-.+. |+.+..|++-|+|-+|.|++..+=|.+++-.-++ --++-+-|
T Consensus 624 ~i~sgKq~k~FKgs~~~eG~lIKv~l----DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs--------E~VTG~kF 691 (1080)
T KOG1408|consen 624 DIESGKQVKSFKGSRDHEGDLIKVIL----DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS--------EAVTGVKF 691 (1080)
T ss_pred eccccceeeeecccccCCCceEEEEE----CCCccEEEEeecCCceEEEEeccchhhhhhcCcc--------hheeeeee
Confidence 999998832221 1 111111 7789999999999999999999999888742222 22677889
Q ss_pred c-CCc-EEEEcceeEEEEEeecCCCcccccCCCccc
Q 001321 868 D-NGQ-ITLANGSEVAFVNLLAGENEFSILESSPCL 901 (1100)
Q Consensus 868 s-~gq-~~l~~g~e~~~~s~~~~~~~~~~~~~~~~~ 901 (1100)
+ |.. +|-+.|++-.||.-+..+|..|+..-++.|
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~l 727 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGRL 727 (1080)
T ss_pred cccchhheeecCCceEEEEECchhHhHHHHHHhhHH
Confidence 9 886 666667999999999899988887776543
No 15
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-28 Score=277.61 Aligned_cols=348 Identities=16% Similarity=0.226 Sum_probs=251.0
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
....|+.++|+|...++++.-..|.|++||++-+.++..+ .|+++|..++|+|+..++++|++|-.|+||+|...+ .
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--c 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--C 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce--e
Confidence 4468999999999999999999999999999999999988 899999999999999999999999999999999633 2
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~ 232 (1100)
. |++.+|- +.|..+.||+. .-.+++++.|.+|+|||+.+++++. ..||
T Consensus 86 l---ftL~GHl------------DYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGH-------------- 134 (1202)
T KOG0292|consen 86 L---FTLLGHL------------DYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGH-------------- 134 (1202)
T ss_pred h---hhhcccc------------ceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecC--------------
Confidence 2 5577776 89999999994 4469999999999999999987654 6788
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCccc----------------CCCCcc
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT----------------GSRNNV 296 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~----------------~~~~~~ 296 (1100)
...|.|+.|+ |..+.|++++-|.+||+||+..-......+. ...+.+
T Consensus 135 ----------------nHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 135 ----------------NHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred ----------------ceEEEeeccC-CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 8899999986 9999999999999999999976532221111 011222
Q ss_pred eeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEE
Q 001321 297 VKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMIL 376 (1100)
Q Consensus 297 ~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~ 376 (1100)
+|..+..+.+ .+.|+. +.+.-.++|+|++|. -+++|..++.
T Consensus 198 VK~VLEGHDR-----GVNwaA-----fhpTlpliVSG~DDR-------qVKlWrmnet---------------------- 238 (1202)
T KOG0292|consen 198 VKHVLEGHDR-----GVNWAA-----FHPTLPLIVSGADDR-------QVKLWRMNET---------------------- 238 (1202)
T ss_pred eeeeeccccc-----ccceEE-----ecCCcceEEecCCcc-------eeeEEEeccc----------------------
Confidence 2222211111 122322 444455666666654 3333333210
Q ss_pred ccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHh
Q 001321 377 LSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLS 456 (1100)
Q Consensus 377 ~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~ 456 (1100)
++|.
T Consensus 239 ----------------------------------------------------------------------------KaWE 242 (1202)
T KOG0292|consen 239 ----------------------------------------------------------------------------KAWE 242 (1202)
T ss_pred ----------------------------------------------------------------------------ccee
Confidence 0111
Q ss_pred HHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCC
Q 001321 457 EIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSR 536 (1100)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~ 536 (1100)
. ....||.+.++++-|+|..+++++.++|++|||||+...... ...+..+
T Consensus 243 v-------------------DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v-----------~tfrren 292 (1202)
T KOG0292|consen 243 V-------------------DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV-----------QTFRREN 292 (1202)
T ss_pred e-------------------hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce-----------eeeeccC
Confidence 1 133467777788889999999999999999999999987644 2244445
Q ss_pred CCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC
Q 001321 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 616 (1100)
Q Consensus 537 ~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~ 616 (1100)
...+.++-+|..+++|.|.++| +.||+++..+. +.+.+.++
T Consensus 293 dRFW~laahP~lNLfAAgHDsG-m~VFkleRErp-------------------------------------a~~v~~n~- 333 (1202)
T KOG0292|consen 293 DRFWILAAHPELNLFAAGHDSG-MIVFKLERERP-------------------------------------AYAVNGNG- 333 (1202)
T ss_pred CeEEEEEecCCcceeeeecCCc-eEEEEEcccCc-------------------------------------eEEEcCCE-
Confidence 6899999999999999777666 45899886522 23344333
Q ss_pred EEEEEeCCceEEEEecCCceEEEEeecCCC--CCCCeEEEEEee
Q 001321 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISG--SSSPIISMTWTE 658 (1100)
Q Consensus 617 ~LavGs~dG~V~vwD~~~~~~~~~~~~~~~--~~~~V~sl~fs~ 658 (1100)
++.+- |..|+-+|+++.+-.--...... ...++.++.|++
T Consensus 334 LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNp 375 (1202)
T KOG0292|consen 334 LFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNP 375 (1202)
T ss_pred EEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeecc
Confidence 34443 78899999987433322222221 346777888773
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.6e-28 Score=247.24 Aligned_cols=290 Identities=13% Similarity=0.196 Sum_probs=236.7
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC-CCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
..+.+|.+.|.++.|++|.++|+|++.||.+.|||..+....+.+..+ ..|..++|+|.++++|+|+-|....|+++..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 567899999999999999999999999999999999887777766554 6799999999999999999999999999885
Q ss_pred C--CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccc
Q 001321 149 D--EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKD 225 (1100)
Q Consensus 149 ~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~ 225 (1100)
. ++... ..-.+++|. +.+.++.| .+++. |++++.|.+..+||+++++.... .||
T Consensus 129 ~d~~g~~~-v~r~l~gHt------------gylScC~f--~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH------- 185 (343)
T KOG0286|consen 129 RDAEGNVR-VSRELAGHT------------GYLSCCRF--LDDNH-ILTGSGDMTCALWDIETGQQTQVFHGH------- 185 (343)
T ss_pred ccccccce-eeeeecCcc------------ceeEEEEE--cCCCc-eEecCCCceEEEEEcccceEEEEecCC-------
Confidence 4 22222 123477777 89999999 44665 99999999999999999987664 466
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-CCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeecccc
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (1100)
.+.|.++... | +++.+++|+.|++-++||+..+.-.+
T Consensus 186 -----------------------~gDV~slsl~-p~~~ntFvSg~cD~~aklWD~R~~~c~q------------------ 223 (343)
T KOG0286|consen 186 -----------------------TGDVMSLSLS-PSDGNTFVSGGCDKSAKLWDVRSGQCVQ------------------ 223 (343)
T ss_pred -----------------------cccEEEEecC-CCCCCeEEecccccceeeeeccCcceeE------------------
Confidence 8889999965 8 99999999999999999986541000
Q ss_pred CCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCC
Q 001321 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1100)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~ 384 (1100)
.+
T Consensus 224 -------tF----------------------------------------------------------------------- 225 (343)
T KOG0286|consen 224 -------TF----------------------------------------------------------------------- 225 (343)
T ss_pred -------ee-----------------------------------------------------------------------
Confidence 00
Q ss_pred CCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccc
Q 001321 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1100)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1100)
T Consensus 226 -------------------------------------------------------------------------------- 225 (343)
T KOG0286|consen 226 -------------------------------------------------------------------------------- 225 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEE
Q 001321 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF 544 (1100)
Q Consensus 465 ~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~laf 544 (1100)
-||...++.+.|.|+|.-++||++|++.|+||+....-..+|. -..-..+|++++|
T Consensus 226 ---------------~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---------~~~~~~gitSv~F 281 (343)
T KOG0286|consen 226 ---------------EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---------HDSIICGITSVAF 281 (343)
T ss_pred ---------------cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec---------cCcccCCceeEEE
Confidence 0222233455788899999999999999999998765332222 1122358999999
Q ss_pred eeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCC
Q 001321 545 CFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC 624 (1100)
Q Consensus 545 spd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~d 624 (1100)
|..|++|..|-.|.++.+||.-... .+..+.+|...|++|..+|||..||+|+.|
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e-------------------------~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGE-------------------------RVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred cccccEEEeeecCCceeEeeccccc-------------------------eEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 9999999999999999999986652 346678999999999999999999999999
Q ss_pred ceEEEEe
Q 001321 625 GRVAVLD 631 (1100)
Q Consensus 625 G~V~vwD 631 (1100)
.+++||.
T Consensus 337 s~lriW~ 343 (343)
T KOG0286|consen 337 STLRIWA 343 (343)
T ss_pred HheeecC
Confidence 9999994
No 17
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.7e-26 Score=247.60 Aligned_cols=404 Identities=16% Similarity=0.197 Sum_probs=278.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCC--------eEEEEeCCCceEEEe-CCCCCCEEEEEEEe--CCCEEEEEEC--CC
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDG--------RIKVIGGDGIEGLLI-SPSQLPYKNLEFLQ--NQGFLISITN--DN 98 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG--------~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~--d~~~Lls~s~--d~ 98 (1100)
.||+..|.|++.+|+.-++|+|...| .+||||-.....+.. ......|.+++|++ .|.+|..++. +.
T Consensus 101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h 180 (626)
T KOG2106|consen 101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH 180 (626)
T ss_pred cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence 38999999999999999999887766 599999755544433 34555799999998 3455666554 44
Q ss_pred cEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 99 EIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 99 ~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
.+.|||++.+..+... .....|....|.|...-+.+....|.+.+|.... +.+...--.+..+. + .
T Consensus 181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~--~~l~k~~~~fek~e----------k-k 247 (626)
T KOG2106|consen 181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG--GSLVKRQGIFEKRE----------K-K 247 (626)
T ss_pred ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC--CceEEEeecccccc----------c-e
Confidence 5899999998776665 4556789999999999999999999999997654 44443211122211 1 6
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~ 256 (1100)
-|.|++|.+ +|+ +++|.++|.|.||+..+.++.. ...| ++.|-++|
T Consensus 248 ~Vl~v~F~e--ngd-viTgDS~G~i~Iw~~~~~~~~k~~~aH------------------------------~ggv~~L~ 294 (626)
T KOG2106|consen 248 FVLCVTFLE--NGD-VITGDSGGNILIWSKGTNRISKQVHAH------------------------------DGGVFSLC 294 (626)
T ss_pred EEEEEEEcC--CCC-EEeecCCceEEEEeCCCceEEeEeeec------------------------------CCceEEEE
Confidence 799999966 787 9999999999999998877643 3355 89999999
Q ss_pred EecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCC
Q 001321 257 WASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1100)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~ 336 (1100)
-. .+|. |++|+.|..|..||- +-. +...+.+ .....++..+ ....+. ++.|...
T Consensus 295 ~l-r~Gt-llSGgKDRki~~Wd~-~y~-----------k~r~~el--Pe~~G~iRtv---------~e~~~d-i~vGTtr 348 (626)
T KOG2106|consen 295 ML-RDGT-LLSGGKDRKIILWDD-NYR-----------KLRETEL--PEQFGPIRTV---------AEGKGD-ILVGTTR 348 (626)
T ss_pred Ee-cCcc-EeecCccceEEeccc-ccc-----------ccccccC--chhcCCeeEE---------ecCCCc-EEEeecc
Confidence 76 8887 666999999999992 111 0111111 1112233333 111111 2222111
Q ss_pred CCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccC
Q 001321 337 IGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQE 416 (1100)
Q Consensus 337 ~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~ 416 (1100)
+.++.-.......
T Consensus 349 -------------------------------------------------------------N~iL~Gt~~~~f~------ 361 (626)
T KOG2106|consen 349 -------------------------------------------------------------NFILQGTLENGFT------ 361 (626)
T ss_pred -------------------------------------------------------------ceEEEeeecCCce------
Confidence 1111100000000
Q ss_pred CCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCc
Q 001321 417 KKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR 496 (1100)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~ 496 (1100)
+..-||..+..-++.+|+.+
T Consensus 362 ------------------------------------------------------------~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 362 ------------------------------------------------------------LTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred ------------------------------------------------------------EEEEecccceeeEEcCCChh
Confidence 01112222233347888999
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1100)
+|+|+++|+.+++|+ ...+. .. ... ..++.|++|+|.| .+|+|...|...|.|.++.
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~--wt-------~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-------- 438 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLE--WT-------KII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-------- 438 (626)
T ss_pred heeeccCcceEEEcc--CCcee--EE-------EEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc--------
Confidence 999999999999999 22221 11 111 1489999999999 9999999999999998874
Q ss_pred eccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEE
Q 001321 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1100)
Q Consensus 577 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~f 656 (1100)
-++....-..++++++|+|+|.+||+|+.|+.|+||-+....-.|..-. .-+.++|+.|+|
T Consensus 439 ------------------~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDw 499 (626)
T KOG2106|consen 439 ------------------DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDW 499 (626)
T ss_pred ------------------eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeee
Confidence 2344444589999999999999999999999999998876544433222 114499999999
Q ss_pred eecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 657 s~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
+.++.. |.+-+-|-.|+.|+
T Consensus 500 S~Ds~~----------------------~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 500 SSDSQF----------------------LVSNSGDYEILYWK 519 (626)
T ss_pred cCCCce----------------------EEeccCceEEEEEc
Confidence 966544 99999999999996
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3.1e-28 Score=259.55 Aligned_cols=332 Identities=19% Similarity=0.291 Sum_probs=256.4
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCC------ceEEEe---------CCCCCCEEEEEEEeCCCEEEEEE
Q 001321 32 YGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDG------IEGLLI---------SPSQLPYKNLEFLQNQGFLISIT 95 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~------~~~~~~---------~~h~~~V~~l~fs~d~~~Lls~s 95 (1100)
-+|.+.|.+.+|+|... +||+|+.|-..|+|++.. .+..+. .+....|++|+|+.+|..|++++
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34889999999999877 999999999999999853 111111 11234799999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 96 NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 96 ~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.||.+++|+.........-.|.++|.++.|+..+.|+++|+.||++.+||.-. ++..+. ++-|.
T Consensus 255 ~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~--g~~~q~---f~~~s----------- 318 (524)
T KOG0273|consen 255 EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT--GTVKQQ---FEFHS----------- 318 (524)
T ss_pred cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC--ceEEEe---eeecc-----------
Confidence 99999999998888877779999999999999999999999999999999754 444433 33222
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
.+-..|.|.- +.. +++.+.||.|+|+-+...+++ .+.|| .+.|.+
T Consensus 319 -~~~lDVdW~~--~~~-F~ts~td~~i~V~kv~~~~P~~t~~GH------------------------------~g~V~a 364 (524)
T KOG0273|consen 319 -APALDVDWQS--NDE-FATSSTDGCIHVCKVGEDRPVKTFIGH------------------------------HGEVNA 364 (524)
T ss_pred -CCccceEEec--Cce-EeecCCCceEEEEEecCCCcceeeecc------------------------------cCceEE
Confidence 3336678833 444 999999999999999988764 45666 899999
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeC
Q 001321 255 LCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGG 334 (1100)
Q Consensus 255 l~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg 334 (1100)
+-|. |.|..|+++++|+++++|+....... ..+.. ....|..+.|+.
T Consensus 365 lk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~-----------~~l~~----Hskei~t~~wsp----------------- 411 (524)
T KOG0273|consen 365 LKWN-PTGSLLASCSDDGTLKIWSMGQSNSV-----------HDLQA----HSKEIYTIKWSP----------------- 411 (524)
T ss_pred EEEC-CCCceEEEecCCCeeEeeecCCCcch-----------hhhhh----hccceeeEeecC-----------------
Confidence 9996 99999999999999999997543111 00000 000111111111
Q ss_pred CCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeec
Q 001321 335 DEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQ 414 (1100)
Q Consensus 335 ~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~ 414 (1100)
.
T Consensus 412 --------------------------------------------~----------------------------------- 412 (524)
T KOG0273|consen 412 --------------------------------------------T----------------------------------- 412 (524)
T ss_pred --------------------------------------------C-----------------------------------
Confidence 1
Q ss_pred cCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCC
Q 001321 415 QEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV 494 (1100)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~ 494 (1100)
|+.. .....
T Consensus 413 -----------------------------------------------------------------g~v~------~n~~~ 421 (524)
T KOG0273|consen 413 -----------------------------------------------------------------GPVT------SNPNM 421 (524)
T ss_pred -----------------------------------------------------------------CCcc------CCCcC
Confidence 0000 11233
Q ss_pred CcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcce
Q 001321 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1100)
Q Consensus 495 ~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1100)
+..+++++.|++|++||+..+.+. ..+..|..+|.+|+|+|++++||+|+.||.|.+|+.....
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i-----------~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~----- 485 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPI-----------HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK----- 485 (524)
T ss_pred CceEEEeecCCeEEEEEccCCcee-----------EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh-----
Confidence 448999999999999999988866 4467899999999999999999999999999999988752
Q ss_pred eeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 575 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
.+..+ .-.+.|..|+|+.+|.+|++...||.+++.|++
T Consensus 486 --------------------l~~s~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 486 --------------------LVKSY-QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --------------------eeEee-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 22222 345569999999999999999999999999986
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=8.4e-28 Score=242.06 Aligned_cols=214 Identities=17% Similarity=0.239 Sum_probs=179.8
Q ss_pred CCccccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CceEEEeCCCCCCEEEEEEEeCCCEEEEEEC
Q 001321 18 SLTAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITN 96 (1100)
Q Consensus 18 ~l~~~~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~ 96 (1100)
.+..-.|..+.+.+ ||.++|.++.|++|.++|++++.||.+.|||.- ...+..+.-....|-..+|+|.|.++++++-
T Consensus 39 ~~~~i~~~~rr~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 39 SVGRIQMRTRRTLK-GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred cceeeeeeeEEEec-ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc
Confidence 33445567775555 999999999999999999999999999999983 3333344445568999999999999999999
Q ss_pred CCcEEEEEcCCC--c----eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001321 97 DNEIQVWSLESR--S----LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 97 d~~I~vWd~~s~--~----~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
|+...|+++.++ + ....+ .|.+-+.|+.|-. ..++++|+.|.++-+||++. ++..+. +.+|.
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~~---f~GH~----- 186 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQV---FHGHT----- 186 (343)
T ss_pred CceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEEE---ecCCc-----
Confidence 999999999876 2 22333 7889999999987 67899999999999999886 555543 77887
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCC
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~ 248 (1100)
+.|.++.+.|+ +++.+++|+-|+..+|||++++..++ +.+|
T Consensus 187 -------gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh------------------------------ 228 (343)
T KOG0286|consen 187 -------GDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH------------------------------ 228 (343)
T ss_pred -------ccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeeccc------------------------------
Confidence 99999999997 67779999999999999999997655 5666
Q ss_pred CCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 249 ~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+..|.+++|+ |+|.-+++|++|++.++||+...
T Consensus 229 esDINsv~ff-P~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 229 ESDINSVRFF-PSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred ccccceEEEc-cCCCeeeecCCCceeEEEeecCC
Confidence 8889999998 99999999999999999998644
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3e-28 Score=259.63 Aligned_cols=323 Identities=16% Similarity=0.228 Sum_probs=254.5
Q ss_pred eCCCCCCEEEEEEEeCCC-EEEEEECCCcEEEEEcCCC------cee---------eeeecCCCeEEEEEecCCCEEEEE
Q 001321 72 ISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESR------SLA---------CCLKWESNITAFSVISGSHFMYIG 135 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~~s~------~~l---------~~~~~~~~Vt~~~~s~~~~~l~~G 135 (1100)
..+|+.+|.+.+|.|-.. .|++++.+-+.++|++... ++. ........||+++|+.+|..||+|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 344999999999999654 7888889999999999751 111 111223579999999999999999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE
Q 001321 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~ 215 (1100)
..+|.++||+.+ +.+... +..|. ++|.++.| +..|++|++++.|+++.+||..++.+.+.
T Consensus 254 ~~~G~~riw~~~---G~l~~t---l~~Hk------------gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 254 SEDGEARIWNKD---GNLIST---LGQHK------------GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred ecCcEEEEEecC---chhhhh---hhccC------------CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 999999999987 444432 55555 99999999 44899999999999999999999988776
Q ss_pred ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCc
Q 001321 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNN 295 (1100)
Q Consensus 216 ~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~ 295 (1100)
+.. + ...-..+.|- +...+++.+.||.|+++.+...
T Consensus 314 f~~---------~--------------------s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~------------- 349 (524)
T KOG0273|consen 314 FEF---------H--------------------SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGED------------- 349 (524)
T ss_pred eee---------c--------------------cCCccceEEe--cCceEeecCCCceEEEEEecCC-------------
Confidence 643 1 2222446776 3455899999999999876421
Q ss_pred ceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEE
Q 001321 296 VVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMI 375 (1100)
Q Consensus 296 ~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~ 375 (1100)
.|+..+
T Consensus 350 ------------~P~~t~-------------------------------------------------------------- 355 (524)
T KOG0273|consen 350 ------------RPVKTF-------------------------------------------------------------- 355 (524)
T ss_pred ------------Ccceee--------------------------------------------------------------
Confidence 011111
Q ss_pred EccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhH
Q 001321 376 LLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGL 455 (1100)
Q Consensus 376 ~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~ 455 (1100)
T Consensus 356 -------------------------------------------------------------------------------- 355 (524)
T KOG0273|consen 356 -------------------------------------------------------------------------------- 355 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCC
Q 001321 456 SEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGS 535 (1100)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h 535 (1100)
. ||.++++++.+.|.+.+|+|++.|++++||......+. -.+.+|
T Consensus 356 -----------------------~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-----------~~l~~H 400 (524)
T KOG0273|consen 356 -----------------------I-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-----------HDLQAH 400 (524)
T ss_pred -----------------------e-cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch-----------hhhhhh
Confidence 1 13333444456677889999999999999997766544 457899
Q ss_pred CCCeeEEEEeeCC---------CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCe
Q 001321 536 RAPVSTLSFCFIN---------SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1100)
Q Consensus 536 ~~~Vt~lafspd~---------~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~V 606 (1100)
+..|..+.|+|.+ ..|++++.|++|++|+.... +++..|..|..||
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------------v~i~~f~kH~~pV 455 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------------VPIHTLMKHQEPV 455 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------------ceeEeeccCCCce
Confidence 9999999999865 47999999999999999876 4788899999999
Q ss_pred EEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEE
Q 001321 607 RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII 686 (1100)
Q Consensus 607 tsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~ 686 (1100)
.+|+|||+|++||+|+-||.|.+|+.+++++.... .-...|..|+|+..+.. |.
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~----~~~~~Ifel~Wn~~G~k----------------------l~ 509 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY----QGTGGIFELCWNAAGDK----------------------LG 509 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccchheeEee----cCCCeEEEEEEcCCCCE----------------------EE
Confidence 99999999999999999999999999999887322 24667999999976644 78
Q ss_pred EEecceeEEEEe
Q 001321 687 VLFKDAKISIVG 698 (1100)
Q Consensus 687 ~gt~dg~v~v~d 698 (1100)
.+-+||.+++.|
T Consensus 510 ~~~sd~~vcvld 521 (524)
T KOG0273|consen 510 ACASDGSVCVLD 521 (524)
T ss_pred EEecCCCceEEE
Confidence 888999999998
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.3e-27 Score=245.83 Aligned_cols=340 Identities=13% Similarity=0.145 Sum_probs=263.7
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC
Q 001321 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~ 106 (1100)
.+--.+|...+-+++.+|+.+++|+|+.|..-.||+....+ ...+.+|+..|+++.|+.+|.+|++++-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 33445899999999999999999999999999999995554 45678999999999999999999999999999999999
Q ss_pred CCceeeeee-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 107 SRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 107 s~~~l~~~~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
++.....+. .-..|-=+.|+|....|+.|+.||.|-+|.++. +...+. +++|. .++++=.|.
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv---~~Gh~------------~~ct~G~f~ 199 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS--QALCKV---MSGHN------------SPCTCGEFI 199 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC--cceeeE---ecCCC------------CCccccccc
Confidence 999888875 456788999999999999999999886666554 344433 67777 889999998
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
| +|++++++|.||+|++||..++.+.......+ ....+++.+ +.++..+
T Consensus 200 p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e----------------------------~~~~~~~~~-~~~~~~~ 248 (399)
T KOG0296|consen 200 P--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAE----------------------------GLELPCISL-NLAGSTL 248 (399)
T ss_pred C--CCceEEEEecCceEEEEecCCCceeEEecccc----------------------------cCcCCcccc-cccccee
Confidence 8 79999999999999999999998776554311 223445554 3778889
Q ss_pred EEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEE
Q 001321 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltv 345 (1100)
+.|..++...+-+..+++... .. ++ . .+ .
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~------------~~----------------------n~-~--------~~--------~ 277 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVN------------CN----------------------NG-T--------VP--------E 277 (399)
T ss_pred EeccCCccEEEEccccceEEE------------ec----------------------CC-C--------Cc--------c
Confidence 999999988887765541000 00 00 0 00 0
Q ss_pred EEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCcc
Q 001321 346 LSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVE 425 (1100)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 425 (1100)
+...
T Consensus 278 l~~~---------------------------------------------------------------------------- 281 (399)
T KOG0296|consen 278 LKPS---------------------------------------------------------------------------- 281 (399)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCC
Q 001321 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1100)
Q Consensus 426 ~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DG 505 (1100)
+...+.++.++ .++..=.+.|+|+-||
T Consensus 282 -------~e~~~esve~~----------------------------------------------~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 282 -------QEELDESVESI----------------------------------------------PSSSKLPLAACGSVDG 308 (399)
T ss_pred -------chhhhhhhhhc----------------------------------------------ccccccchhhcccccc
Confidence 00000011110 1222223788999999
Q ss_pred cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCcee
Q 001321 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1100)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~ 585 (1100)
+|-|||.....++. .-.|..+|+.+-|-+ ..+|+++..+|.|+.||.+++
T Consensus 309 ~i~iyD~a~~~~R~------------~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG----------------- 358 (399)
T KOG0296|consen 309 TIAIYDLAASTLRH------------ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG----------------- 358 (399)
T ss_pred eEEEEecccchhhe------------eccCCCceEEEEEcC-cchheeeccCceEEeeecccc-----------------
Confidence 99999999888762 335667899999999 899999999999999999887
Q ss_pred eccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 586 ALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 586 ~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
++...+.+|+.+|.+++++|+.+++++++.|++.+|++..
T Consensus 359 --------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 359 --------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 4778899999999999999999999999999999999864
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=3.1e-27 Score=232.60 Aligned_cols=185 Identities=19% Similarity=0.283 Sum_probs=148.9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCC-CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce--eeee-ecCCCeEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--ACCL-KWESNITA 122 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~--l~~~-~~~~~Vt~ 122 (1100)
.-+||+++.|.+||+|......+.....|. +.|..|...|+++.|++++ ...|+++|+.++.. +.++ .|...|++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 358999999999999999766666666665 4899999999988887776 67799999998864 5555 67789999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEE
Q 001321 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1100)
Q Consensus 123 ~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V 202 (1100)
+.|..+++||++|++||+++||++.... .+..|..+ .+|.+|..||. .+.|+++..+|.|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~---~qR~~~~~---------------spVn~vvlhpn--QteLis~dqsg~i 148 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLS---CQRNYQHN---------------SPVNTVVLHPN--QTELISGDQSGNI 148 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcc---cchhccCC---------------CCcceEEecCC--cceEEeecCCCcE
Confidence 9999999999999999999999998521 11112222 88999999994 5559999999999
Q ss_pred EEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 203 ~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
++||+.+......... .....|+++.-. |||.+++.+-..|...+|++.+
T Consensus 149 rvWDl~~~~c~~~liP----------------------------e~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIP----------------------------EDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred EEEEccCCccccccCC----------------------------CCCcceeeEEEc-CCCcEEEEecCCccEEEEEccC
Confidence 9999998754332211 115678999965 9999999999999999999864
No 23
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=99.96 E-value=4.8e-28 Score=273.48 Aligned_cols=316 Identities=20% Similarity=0.239 Sum_probs=200.6
Q ss_pred CCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCc--------cee---eec-cCCCceeeccC------CCcceeEEE
Q 001321 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK--------NFL---FVL-ETKSEVHALPE------GKISLCRAV 598 (1100)
Q Consensus 537 ~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~--------~~~---~~~-~~~~~~~~i~~------~~~~~~~~~ 598 (1100)
..|++++|+++...|++|..+|.|.||+|..+.... +.. +.. +..+++.++.. .+|+.+...
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 369999999999999999999999999998874332 111 111 23445555554 567888888
Q ss_pred EeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC-----CCCCCeEEEEEe--ecccCccccCCCCC
Q 001321 599 FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-----GSSSPIISMTWT--EFKNTHSLAKNPNH 671 (1100)
Q Consensus 599 ~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~-----~~~~~V~sl~fs--~~~~~~~~~~~~~~ 671 (1100)
+...+++|++|+.|..| |+|+|+++|.+.|+|+|+|.++|+.+... ..+..|++++|+ .++.+
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D--------- 151 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGD--------- 151 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTS---------
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCC---------
Confidence 88889999999999888 89999999999999999999999987755 256789999999 55555
Q ss_pred CCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEecccCCCCccchhhhhhhhhhccCCCCC
Q 001321 672 SEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTP 751 (1100)
Q Consensus 672 ~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1100)
+|++++|++||+.|.+.+|+ ++|..++ ++.+.+.+... ..++ +
T Consensus 152 -------~ySSi~L~vGTn~G~v~~fk-----------Ilp~~~g-~f~v~~~~~~~-----------------~~~~-~ 194 (395)
T PF08596_consen 152 -------GYSSICLLVGTNSGNVLTFK-----------ILPSSNG-RFSVQFAGATT-----------------NHDS-P 194 (395)
T ss_dssp -------SSEEEEEEEEETTSEEEEEE-----------EEE-GGG--EEEEEEEEE-------------------SS---
T ss_pred -------cccceEEEEEeCCCCEEEEE-----------EecCCCC-ceEEEEeeccc-----------------cCCC-c
Confidence 78999999999999999999 8887766 78888887640 1222 4
Q ss_pred CCCcccccCcccccccccc------cccCCCCCCCCEEEEEecCeeEEEeccccee--eccccc----ccceeeeeecCC
Q 001321 752 DTSSIETKSHETEHLFSSE------NACSGESSNDALVLLCCEDSVRLYSRKSVIQ--KVKHKN----RCCWASTIEKDE 819 (1100)
Q Consensus 752 v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~cse~~vrl~sl~~~~~--~~~~~~----~c~~~~~~~~~~ 819 (1100)
| ..|..|+.+++..+. +.+.++..+++++++|+|+++|||++++.+. |..-.. .||+.++.. ..
T Consensus 195 i---~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~-~~ 270 (395)
T PF08596_consen 195 I---LSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTIS-RN 270 (395)
T ss_dssp -----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE--EE
T ss_pred e---EEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecc-cC
Confidence 4 567778777666555 4677888889999999999999999999988 322111 223333222 34
Q ss_pred ceEEEEEEEecCcEEEeecCChhhhhhccccceeeeeeccccccceeec-CCcEEEEcc-eeEEEEEeecCCCc--cccc
Q 001321 820 KVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFVNLLAGENE--FSIL 895 (1100)
Q Consensus 820 ~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g-~e~~~~s~~~~~~~--~~~~ 895 (1100)
.+.+|+|++.||+|++||||+|+.+++.++...++- ..++..+++ +|++++++| .|+++++++.+... .+..
T Consensus 271 ~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~----~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~~~~~~~~~~~ 346 (395)
T PF08596_consen 271 GGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS----RRLSSSSISRNGDIFYWTGPSEIQLFSVWGEGRTGSSLLA 346 (395)
T ss_dssp EEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H----HHHTT-EE-TTS-EEEE-SSSEEEEEEEES----------
T ss_pred CceEEEEEECCCcEEEEECCCchHhhcccCCCcccc----ccccccEECCCCCEEEEeCcccEEEEEEEccCCccccccC
Confidence 799999999999999999999999999888754442 235567889 999999999 99999999988777 5556
Q ss_pred CCCccchhhhhH
Q 001321 896 ESSPCLHDKVLE 907 (1100)
Q Consensus 896 ~~~~~~~~~~~~ 907 (1100)
.....||.+...
T Consensus 347 ~~~d~L~np~~~ 358 (395)
T PF08596_consen 347 PPTDTLYNPNLI 358 (395)
T ss_dssp ----B---TT--
T ss_pred CCCCeEECCCCC
Confidence 666778888664
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=6.8e-27 Score=230.23 Aligned_cols=297 Identities=12% Similarity=0.147 Sum_probs=234.0
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecC-CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
-+|++++.|.+|++|...+|....+++|+ +.|..+.+.|+.+.||+++.-. ||++|+........ ..+.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv---~t~e~h~--- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPV---ATFEGHT--- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCce---eEEeccC---
Confidence 57999999999999999999999999776 7899999999999999987655 89999887544333 3466665
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
.-|++|.|+- +|..+++|++||+++|||++.-.+.+.+.|
T Consensus 84 ---------kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR~~~~----------------------------- 123 (311)
T KOG0315|consen 84 ---------KNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQRNYQH----------------------------- 123 (311)
T ss_pred ---------CceEEEEEee--cCeEEEecCCCceEEEEeccCcccchhccC-----------------------------
Confidence 7799999965 899999999999999999999766666666
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCc
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDG 327 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~ 327 (1100)
..+|.+++-+ |+...|++|..+|.|++||+....-. +.. .|++.
T Consensus 124 -~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~-------------------------------~~l---iPe~~ 167 (311)
T KOG0315|consen 124 -NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCT-------------------------------HEL---IPEDD 167 (311)
T ss_pred -CCCcceEEec-CCcceEEeecCCCcEEEEEccCCccc-------------------------------ccc---CCCCC
Confidence 7889999975 99999999999999999998643000 000 00000
Q ss_pred eEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCc
Q 001321 328 RLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS 407 (1100)
Q Consensus 328 ~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~ 407 (1100)
T Consensus 168 -------------------------------------------------------------------------------- 167 (311)
T KOG0315|consen 168 -------------------------------------------------------------------------------- 167 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccC
Q 001321 408 LTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVP 487 (1100)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~ 487 (1100)
..+.
T Consensus 168 ----------------------------------------------------------------------------~~i~ 171 (311)
T KOG0315|consen 168 ----------------------------------------------------------------------------TSIQ 171 (311)
T ss_pred ----------------------------------------------------------------------------ccee
Confidence 0001
Q ss_pred ccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecC
Q 001321 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 488 ~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~ 567 (1100)
.+...+|+.+++.+...|..++|++-+..... .+. .+ ..+..|+.-+..+-||||+++||+++.|.+|+||+.++
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s--~l~-P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS--ELE-PV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccc--cce-Eh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 11456788899999999999999987643210 010 00 23678999999999999999999999999999999887
Q ss_pred CCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCC
Q 001321 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGS 647 (1100)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~ 647 (1100)
. +..-..+.+|+..|...+||.||++|++|+.|+++++||+..++.+ ....+|
T Consensus 247 ~------------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v---~qy~gh 299 (311)
T KOG0315|consen 247 F------------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV---RQYQGH 299 (311)
T ss_pred c------------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee---eecCCc
Confidence 4 1244677899999999999999999999999999999999999877 344467
Q ss_pred CCCeEEEEE
Q 001321 648 SSPIISMTW 656 (1100)
Q Consensus 648 ~~~V~sl~f 656 (1100)
-.+..+++.
T Consensus 300 ~K~~vc~~l 308 (311)
T KOG0315|consen 300 HKAAVCVAL 308 (311)
T ss_pred ccccEEEEe
Confidence 766666654
No 25
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.1e-25 Score=245.80 Aligned_cols=519 Identities=13% Similarity=0.173 Sum_probs=311.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~---~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
-|++|+||||+...+.||++-.||.|.||++.. .+.++..+....|.+++|+++ ++|.|++.+|.|..||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCce
Confidence 489999999999999999999999999999954 355556666679999999954 8999999999999999999999
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+..+ ...+.|++++.+|.+..+++|++||.+ .++....+.+... -.+.. ++ ++|.++.|+| +
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl--~~~s~~p~~I~~~-r~l~r---q~---------sRvLslsw~~--~ 165 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVL--YDFSIGPDKITYK-RSLMR---QK---------SRVLSLSWNP--T 165 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceE--EEEecCCceEEEE-eeccc---cc---------ceEEEEEecC--C
Confidence 9888 455789999999999999999999954 5555555666521 12222 22 7899999988 6
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
++++++|+.||.|++||+..+..+..... ++. .+. ..+.--|.++.+. .++ .|++|.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~---~~d-~l~-----------------k~~~~iVWSv~~L-rd~-tI~sgD 222 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITM---QLD-RLS-----------------KREPTIVWSVLFL-RDS-TIASGD 222 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeee---ccc-ccc-----------------cCCceEEEEEEEe-ecC-cEEEec
Confidence 88899999999999999999865542111 000 000 0014567788876 555 599999
Q ss_pred cCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001321 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1100)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~ 349 (1100)
+.|+|.|||...+...+.... ....+..+ .......+++.+|-+.. ++.+.
T Consensus 223 S~G~V~FWd~~~gTLiqS~~~---------------h~adVl~L-------av~~~~d~vfsaGvd~~-------ii~~~ 273 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHSC---------------HDADVLAL-------AVADNEDRVFSAGVDPK-------IIQYS 273 (691)
T ss_pred CCceEEEEcccCcchhhhhhh---------------hhcceeEE-------EEcCCCCeEEEccCCCc-------eEEEE
Confidence 999999999988865553110 11122222 11333456666665554 44433
Q ss_pred CccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcc
Q 001321 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1100)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~ 429 (1100)
.+......-... ........+..|+..+. .++....++.++.....+....... ....+|..
T Consensus 274 ~~~~~~~wv~~~-~r~~h~hdvrs~av~~~----------~l~sgG~d~~l~i~~s~~~~~~~h~-------~~~~~p~~ 335 (691)
T KOG2048|consen 274 LTTNKSEWVINS-RRDLHAHDVRSMAVIEN----------ALISGGRDFTLAICSSREFKNMDHR-------QKNLFPAS 335 (691)
T ss_pred ecCCccceeeec-cccCCcccceeeeeecc----------eEEecceeeEEEEccccccCchhhh-------cccccccc
Confidence 332211110000 11111224444444433 2222222222222111100000000 00111111
Q ss_pred cccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEE
Q 001321 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1100)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIri 509 (1100)
-.....+.......--... ...|. +.+... +| .........+.--....+.+.+.+|++++++.+.-. ..+|
T Consensus 336 ~~v~~a~~~~L~~~w~~h~---v~lwr-lGS~~~-~g--~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~i 407 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHG---VDLWR-LGSVIL-QG--EYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKI 407 (691)
T ss_pred ceeecCccceEEEEecccc---cccee-ccCccc-cc--ccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEE
Confidence 1000011111111100000 00110 011000 00 000000001112223456677999999999987533 4678
Q ss_pred eeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEe-cCceEEEEEecCCCCCcceeeeccCCCceeecc
Q 001321 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN-EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP 588 (1100)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~-~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~ 588 (1100)
|.+...........+ ........++.+.|+-|+..++..+ .++.+.++++...... +...+
T Consensus 408 y~L~~~~~vk~~~v~------~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k-----------el~~~- 469 (691)
T KOG2048|consen 408 YRLQPDPNVKVINVD------DVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK-----------ELKSI- 469 (691)
T ss_pred EEeccCcceeEEEec------cchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh-----------hhhcc-
Confidence 877654322111111 1122234788999999998888777 6788888887765321 11111
Q ss_pred CCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCC
Q 001321 589 EGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 668 (1100)
Q Consensus 589 ~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~ 668 (1100)
.-+.-..+|+.|+.||+|+++|+.+.+|.|.+|++++.+..+... .-..+|+++.|.+...
T Consensus 470 ---------~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rln~~vTa~~~~~~~~------- 530 (691)
T KOG2048|consen 470 ---------QSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RLNIDVTAAAFSPFVR------- 530 (691)
T ss_pred ---------ccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---ccCcceeeeecccccc-------
Confidence 012456789999999999999999999999999999987763332 3458999999984332
Q ss_pred CCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 669 PNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 669 ~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
.-|++++.++.|+.||.
T Consensus 531 --------------~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 531 --------------NRLVVATSNNQVFEFDI 547 (691)
T ss_pred --------------CcEEEEecCCeEEEEec
Confidence 33999999999999995
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.3e-26 Score=238.51 Aligned_cols=339 Identities=15% Similarity=0.199 Sum_probs=254.5
Q ss_pred ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001321 67 IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1100)
Q Consensus 67 ~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~ 145 (1100)
..+..+..|+.+|-+++.+|+..++++++.|+.-.+|++.++..+..+ .|...|+|+.|+.++.+||+|+-+|.|+||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 345677899999999999999899999999999999999999977766 8899999999999999999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC-EEEEEecCCccccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLK 224 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~-~~~~~~~~~~~~~~ 224 (1100)
... +... ..+...- ..+.=+.||| .+..|+.|+.||.|-.|.+.++ ......||
T Consensus 135 ~st--g~~~---~~~~~e~------------~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh------ 189 (399)
T KOG0296|consen 135 VST--GGEQ---WKLDQEV------------EDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKVMSGH------ 189 (399)
T ss_pred ccc--CceE---EEeeccc------------CceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeEecCC------
Confidence 876 3333 2232111 6788899999 4667999999999999999994 55556666
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeecccc
Q 001321 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1100)
Q Consensus 225 ~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (1100)
..++++=+|. |+|+++++++.||+|++||+.+++ +..++....+
T Consensus 190 ------------------------~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~-----------p~~~~~~~e~ 233 (399)
T KOG0296|consen 190 ------------------------NSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQ-----------PLHKITQAEG 233 (399)
T ss_pred ------------------------CCCccccccc-CCCceEEEEecCceEEEEecCCCc-----------eeEEeccccc
Confidence 6677777875 999999999999999999998762 2211110000
Q ss_pred CCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCC
Q 001321 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1100)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~ 384 (1100)
+
T Consensus 234 -----------------------~-------------------------------------------------------- 234 (399)
T KOG0296|consen 234 -----------------------L-------------------------------------------------------- 234 (399)
T ss_pred -----------------------C--------------------------------------------------------
Confidence 0
Q ss_pred CCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccc
Q 001321 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1100)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1100)
T Consensus 235 -------------------------------------------------------------------------------- 234 (399)
T KOG0296|consen 235 -------------------------------------------------------------------------------- 234 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceee--eeecCCCCCeeEE
Q 001321 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQG--IEVAGSRAPVSTL 542 (1100)
Q Consensus 465 ~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~--~~l~~h~~~Vt~l 542 (1100)
..+++.++..+..+++|..+|.+++-+...+... ...++.+.. .........|-.+
T Consensus 235 --------------------~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv--~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 235 --------------------ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV--NCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred --------------------cCCccccccccceeEeccCCccEEEEccccceEE--EecCCCCccccccchhhhhhhhhc
Confidence 0011123333445666666666666665555533 222221111 1112222345556
Q ss_pred EEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe
Q 001321 543 SFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 543 afspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs 622 (1100)
.||..=.+.|+|+-||+|.|||+...+ +.....|..+|+.|.|-+ ..+|++++
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------------~R~~c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAAST--------------------------LRHICEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred ccccccchhhcccccceEEEEecccch--------------------------hheeccCCCceEEEEEcC-cchheeec
Confidence 666667788999999999999998752 233457889999999999 66899999
Q ss_pred CCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 623 ~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
.+|.|+.||.+++.+++.. .||..+|.++.+++. ..++++++.|+..+||+.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y---~GH~~~Il~f~ls~~----------------------~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTY---TGHQMGILDFALSPQ----------------------KRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cCceEEeeeccccceEEEE---ecCchheeEEEEcCC----------------------CcEEEEecCCCeEEEEec
Confidence 9999999999999999544 469999999999853 456999999999999984
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-26 Score=232.53 Aligned_cols=204 Identities=18% Similarity=0.217 Sum_probs=174.7
Q ss_pred cCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCc------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEE
Q 001321 32 YGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd 104 (1100)
-||++.|+.++..+. ...|.+++.|..|.+|++... -+....+|..-|+.+..++||.+.++++.|+++++||
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 489999999999987 578999999999999998433 3446678999999999999999999999999999999
Q ss_pred cCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 105 ~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
+.+++....+ .|...|.+++|+++...+++|+.|.+|++|+.-. ... |++..+. +.+.|.|+.
T Consensus 92 l~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g---~ck---~t~~~~~----------~~~WVscvr 155 (315)
T KOG0279|consen 92 LATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG---VCK---YTIHEDS----------HREWVSCVR 155 (315)
T ss_pred ecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc---cEE---EEEecCC----------CcCcEEEEE
Confidence 9998777666 7888999999999999999999999999999763 222 4454332 018899999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
|+|+...-.+++++.|++|++||+.+-++.. +.|| .+.++.+.+ ||||
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh------------------------------~~~v~t~~v-SpDG 204 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH------------------------------SGYVNTVTV-SPDG 204 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhccccc------------------------------cccEEEEEE-CCCC
Confidence 9998756679999999999999999987754 5555 788888885 6999
Q ss_pred CEEEEEEcCCcEEEEecCCC
Q 001321 263 SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...++|+.||.+.+||++.+
T Consensus 205 slcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CEEecCCCCceEEEEEccCC
Confidence 99999999999999999754
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-26 Score=247.91 Aligned_cols=201 Identities=13% Similarity=0.248 Sum_probs=173.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
...+|-++.|+|...++.++--+|.|.||+.+....+.- .-...||++..|.+...++++++.|..|+|+|+.+.+.++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE
Confidence 467899999999999999999999999999977655533 3455699999999999999999999999999999999888
Q ss_pred ee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 113 ~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
.+ .|+.-|.|++++|...+++++++|-+|++|+++.. ... ...+.+|. .-|++|+|+|.+..+
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~-~qtfeGH~------------HyVMqv~fnPkD~nt 155 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WAC-EQTFEGHE------------HYVMQVAFNPKDPNT 155 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc---eee-eeEEcCcc------------eEEEEEEecCCCccc
Confidence 88 78899999999999999999999999999999952 221 13477777 789999999996666
Q ss_pred EEEEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC--CEEEEE
Q 001321 192 RVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SILAVG 268 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg--~~l~sg 268 (1100)
+++++-|++|++|++.+..+. ++.+| .+.|.|++|. +.| .+|++|
T Consensus 156 -FaS~sLDrTVKVWslgs~~~nfTl~gH------------------------------ekGVN~Vdyy-~~gdkpylIsg 203 (794)
T KOG0276|consen 156 -FASASLDRTVKVWSLGSPHPNFTLEGH------------------------------EKGVNCVDYY-TGGDKPYLISG 203 (794)
T ss_pred -eeeeeccccEEEEEcCCCCCceeeecc------------------------------ccCcceEEec-cCCCcceEEec
Confidence 999999999999999887654 45566 8999999987 544 489999
Q ss_pred EcCCcEEEEecCCC
Q 001321 269 YIDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1100)
++|.+|++||..+.
T Consensus 204 aDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 204 ADDLTIKVWDYQTK 217 (794)
T ss_pred CCCceEEEeecchH
Confidence 99999999998643
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=2e-26 Score=231.10 Aligned_cols=290 Identities=18% Similarity=0.219 Sum_probs=224.6
Q ss_pred ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|++.|+.++..+. .+.++.++.|.++.+|++..++...-..-.++.+|. ..|..+..++ +|++.
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs------------H~v~dv~~s~--dg~~a 78 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS------------HFVSDVVLSS--DGNFA 78 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc------------eEecceEEcc--CCceE
Confidence 78899999999988 467888999999999999876544322123466666 6788899966 89999
Q ss_pred EEEEcCCEEEEEEccCCEE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 194 LIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++++.|+++++||+.+++. .++.|| ...|.++++ ++|.+.|++|+.|.
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH------------------------------~~dVlsva~-s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGH------------------------------TKDVLSVAF-STDNRQIVSGSRDK 127 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEec------------------------------CCceEEEEe-cCCCceeecCCCcc
Confidence 9999999999999999865 456677 889999997 59999999999999
Q ss_pred cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
+|.+||...+ .++.... +.
T Consensus 128 Tiklwnt~g~--------------ck~t~~~--------------------------------~~--------------- 146 (315)
T KOG0279|consen 128 TIKLWNTLGV--------------CKYTIHE--------------------------------DS--------------- 146 (315)
T ss_pred eeeeeeeccc--------------EEEEEec--------------------------------CC---------------
Confidence 9999997533 1100000 00
Q ss_pred ccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccccc
Q 001321 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1100)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 432 (1100)
T Consensus 147 -------------------------------------------------------------------------------- 146 (315)
T KOG0279|consen 147 -------------------------------------------------------------------------------- 146 (315)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCC--CcEEEEEecCCcEEEe
Q 001321 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV--DRVYLAGYHDGSVRIW 510 (1100)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~--~~~l~Tg~~DGtIriW 510 (1100)
+...++++.|+|. ..+|++++.|++|++|
T Consensus 147 -------------------------------------------------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW 177 (315)
T KOG0279|consen 147 -------------------------------------------------HREWVSCVRFSPNESNPIIVSASWDKTVKVW 177 (315)
T ss_pred -------------------------------------------------CcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Confidence 0000112233333 4489999999999999
Q ss_pred eCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCC
Q 001321 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1100)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~ 590 (1100)
|+.+..+. ....+|+..|+.+++||||..+++|+.||.+.+||++....
T Consensus 178 nl~~~~l~-----------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-------------------- 226 (315)
T KOG0279|consen 178 NLRNCQLR-----------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-------------------- 226 (315)
T ss_pred ccCCcchh-----------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce--------------------
Confidence 99987765 45668999999999999999999999999999999988632
Q ss_pred CcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC-CC-----CCCeEEEEEeecccCcc
Q 001321 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-GS-----SSPIISMTWTEFKNTHS 664 (1100)
Q Consensus 591 ~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~-~~-----~~~V~sl~fs~~~~~~~ 664 (1100)
.....|...|.+|+|+|..-+|+.+...+ |+|||+++..++....... +. .....+++|+.+|..
T Consensus 227 ------lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t-- 297 (315)
T KOG0279|consen 227 ------LYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT-- 297 (315)
T ss_pred ------eEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE--
Confidence 23357889999999999999999988776 9999999998885544322 11 223456777766655
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
||+|-.|+-|.+|..
T Consensus 298 --------------------Lf~g~td~~irv~qv 312 (315)
T KOG0279|consen 298 --------------------LFAGYTDNVIRVWQV 312 (315)
T ss_pred --------------------EEeeecCCcEEEEEe
Confidence 999999999999983
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.5e-26 Score=248.59 Aligned_cols=281 Identities=17% Similarity=0.289 Sum_probs=228.9
Q ss_pred CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001321 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~ 152 (1100)
.|...|+++.|+|...+++++--.|+|.|||.++...+.++. .+-+|.+..|.+..+|+++|++|+.|+|++|.+.+..
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 477899999999999999999999999999999999999984 4578999999999999999999999999999874322
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC--EEEEEecCCcccccccccCC
Q 001321 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGVVDS 230 (1100)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~--~~~~~~~~~~~~~~~~l~~~ 230 (1100)
. .+..|. +-|.+|+.||.. . ++++++.|.+|++||++.. ....+.||
T Consensus 91 ~-----~FeAH~------------DyIR~iavHPt~-P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH------------ 139 (794)
T KOG0276|consen 91 K-----TFEAHS------------DYIRSIAVHPTL-P-YVLTSSDDMTIKLWDWENEWACEQTFEGH------------ 139 (794)
T ss_pred E-----Eeeccc------------cceeeeeecCCC-C-eEEecCCccEEEEeeccCceeeeeEEcCc------------
Confidence 2 277776 899999999973 3 4999999999999999987 33445667
Q ss_pred CCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcce
Q 001321 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1100)
Q Consensus 231 ~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 310 (1100)
...|+++||...|.+.+++++-|++|++|++... .+..
T Consensus 140 ------------------~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-----------~~nf------------- 177 (794)
T KOG0276|consen 140 ------------------EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-----------HPNF------------- 177 (794)
T ss_pred ------------------ceEEEEEEecCCCccceeeeeccccEEEEEcCCC-----------CCce-------------
Confidence 8899999998556789999999999999988533 1100
Q ss_pred EEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcce
Q 001321 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1100)
Q Consensus 311 ~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~ 390 (1100)
.+ -
T Consensus 178 -Tl------------------~---------------------------------------------------------- 180 (794)
T KOG0276|consen 178 -TL------------------E---------------------------------------------------------- 180 (794)
T ss_pred -ee------------------e----------------------------------------------------------
Confidence 00 0
Q ss_pred EEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcc
Q 001321 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1100)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1100)
-|...++|+.+++.
T Consensus 181 -----------------------------------------gHekGVN~Vdyy~~------------------------- 194 (794)
T KOG0276|consen 181 -----------------------------------------GHEKGVNCVDYYTG------------------------- 194 (794)
T ss_pred -----------------------------------------ccccCcceEEeccC-------------------------
Confidence 02233344444321
Q ss_pred cCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCe
Q 001321 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1100)
Q Consensus 471 ~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~ 550 (1100)
+|..+|+||++|.+|+|||.++..|. .++.+|...|.++.|+|.=.+
T Consensus 195 ----------------------gdkpylIsgaDD~tiKvWDyQtk~CV-----------~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 195 ----------------------GDKPYLISGADDLTIKVWDYQTKSCV-----------QTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred ----------------------CCcceEEecCCCceEEEeecchHHHH-----------HHhhcccccceEEEecCCCcE
Confidence 23348999999999999999999887 678999999999999999999
Q ss_pred EEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEE
Q 001321 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1100)
Q Consensus 551 Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~ 628 (1100)
+++|++||+||||.-.+...+ ..+....+.|++++-.+.++.+++|++.|.|.
T Consensus 242 iisgsEDGTvriWhs~Ty~lE-------------------------~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLE-------------------------KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEEecCCccEEEecCcceehh-------------------------hhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 999999999999998775332 34456678899999999888999999999653
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=3.6e-27 Score=267.52 Aligned_cols=275 Identities=21% Similarity=0.282 Sum_probs=211.0
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
-...++|..|++|+..|+.+-.|..|++|.+...++...- ....+ ..+=+++.|-.+.+.+-+ .....
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk-~~~~l---------~~~d~~sad~~~~~~D~~--~~~~~ 444 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK-DASDL---------SNIDTESADVDVDMLDDD--SSGTS 444 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcccc-chhhh---------ccccccccchhhhhcccc--CCcee
Confidence 3446899999999988888888999999999876443222 11111 011122223222222222 12222
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCcccccccccCCCCC
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~~~~~g 233 (1100)
..+-+|. ++|.++.|+| +.++|+++++|++||+|++.+... +.+.||
T Consensus 445 ---~~L~GH~------------GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~~V~y~GH--------------- 492 (707)
T KOG0263|consen 445 ---RTLYGHS------------GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH--------------- 492 (707)
T ss_pred ---EEeecCC------------Cceeeeeecc--cccceeeccCCcceeeeecccceeEEEecCC---------------
Confidence 2366676 9999999988 677799999999999999999854 567787
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEE
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1100)
..+|..+.|. |.|-++||++.|++-++|...... |. .
T Consensus 493 ---------------~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~-----------Pl--------------R-- 529 (707)
T KOG0263|consen 493 ---------------LAPVWDVQFA-PRGYYFATASHDQTARLWSTDHNK-----------PL--------------R-- 529 (707)
T ss_pred ---------------CcceeeEEec-CCceEEEecCCCceeeeeecccCC-----------ch--------------h--
Confidence 7788999975 999999999999999999864210 00 0
Q ss_pred EecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEE
Q 001321 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1100)
Q Consensus 314 ~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~v 393 (1100)
T Consensus 530 -------------------------------------------------------------------------------- 529 (707)
T KOG0263|consen 530 -------------------------------------------------------------------------------- 529 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCc
Q 001321 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1100)
Q Consensus 394 l~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1100)
T Consensus 530 -------------------------------------------------------------------------------- 529 (707)
T KOG0263|consen 530 -------------------------------------------------------------------------------- 529 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEE
Q 001321 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1100)
Q Consensus 474 ~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Las 553 (1100)
+.-||-+.+.|+.|+|+..+++||+.|.+||+||+.++... ..+.||.++|++|+|||+|++||+
T Consensus 530 ----ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-----------RiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 530 ----IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-----------RIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred ----hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-----------EEecCCCCceEEEEEcCCCceEee
Confidence 11123333355679999999999999999999999999865 346799999999999999999999
Q ss_pred EecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 554 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 554 g~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
|+.||.|.+||+..+. ++..+.+|.+.|.+|.||.+|..||+|+.|.+|++||+.
T Consensus 595 g~ed~~I~iWDl~~~~-------------------------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGS-------------------------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cccCCcEEEEEcCCCc-------------------------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9999999999998862 456778999999999999999999999999999999987
Q ss_pred Cce
Q 001321 634 LLS 636 (1100)
Q Consensus 634 ~~~ 636 (1100)
...
T Consensus 650 ~~~ 652 (707)
T KOG0263|consen 650 KVI 652 (707)
T ss_pred hhc
Confidence 643
No 32
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=9.2e-25 Score=247.57 Aligned_cols=516 Identities=16% Similarity=0.171 Sum_probs=319.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ce-
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SL- 110 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~- 110 (1100)
-+|..|+|+|-+.+--+.|.| ..|.+|-.......+..+|.+.|..+. +-|.+|++++.++.|.||+..++ ..
T Consensus 74 ~lp~~I~alas~~~~vy~A~g---~~i~~~~rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASG---NKIYAYARGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecC---cEEEEEEccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccc
Confidence 378899999887655444443 679999988888888888988888775 44567999999999999999884 21
Q ss_pred ---eeeeecCCC-eEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 111 ---ACCLKWESN-ITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 111 ---l~~~~~~~~-Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
+..+...+. |+++. +|. -+.+++|++.|.+.+|++.+ +++. |.+++.. ..|+++..
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt--~K~v---~~f~~~~------------s~IT~ieq 210 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRT--GKVV---YTFQEFF------------SRITAIEQ 210 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEecc--CcEE---EEecccc------------cceeEecc
Confidence 122233333 77764 343 47899999999999999986 6666 6687665 88999999
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS- 263 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~- 263 (1100)
+|. =+.+++|..+|.|.++|+..++++..|.| . .++|+++.|- .||.
T Consensus 211 sPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~---------d--------------------~g~VtslSFr-tDG~p 258 (910)
T KOG1539|consen 211 SPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQ---------D--------------------WGRVTSLSFR-TDGNP 258 (910)
T ss_pred CCc--ceEEEEeccCceEEEEEcccCcEEEEEEc---------c--------------------ccceeEEEec-cCCCe
Confidence 884 45699999999999999999999988876 0 4899999985 7886
Q ss_pred EEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceE
Q 001321 264 ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVL 343 (1100)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~l 343 (1100)
.+++|+..|.+.+||++.......... .|........+-+...++++.+.|. .+
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~n----------------------ah~~sv~~~~fl~~epVl~ta~~Dn----Sl 312 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRN----------------------AHYGSVTGATFLPGEPVLVTAGADN----SL 312 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeec----------------------cccCCcccceecCCCceEeeccCCC----ce
Confidence 567778889999999986533221100 0100000011233344555555553 33
Q ss_pred EEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCc--eeEeeeccCCCCCC
Q 001321 344 TVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNAS--LTTLLSQQEKKPSV 421 (1100)
Q Consensus 344 tvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~--~~~~~~~~~~~~~~ 421 (1100)
.+..++..++...+ -+..-....|...+.+.-... ..++....++.+..|.... ...-+.+ .....
T Consensus 313 k~~vfD~~dg~pR~---LR~R~GHs~Pp~~irfy~~~g-------~~ilsa~~Drt~r~fs~~~e~~~~~l~~--~~~~~ 380 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRL---LRSRGGHSAPPSCIRFYGSQG-------HFILSAKQDRTLRSFSVISESQSQELGQ--LHNKK 380 (910)
T ss_pred eEEEeeCCCCcchh---eeeccCCCCCchheeeeccCc-------EEEEecccCcchhhhhhhHHHHhHhhcc--ccccc
Confidence 33333322221111 000001111111111111000 0011111111121111000 0000000 00000
Q ss_pred CCccC--CcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCC--CcccCcc---cccccCC----cccccCccc
Q 001321 422 CPVEF--PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS--HTQAGHI---KWPLSGG----VPSPVPITK 490 (1100)
Q Consensus 422 ~~~~~--p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~pl~GG----~~~~~~~~~ 490 (1100)
..... -......-++|+..++-.. ++ ..|..+..+.+.... .+...+. .|.+.-. ....+.+++
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~-RE----~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENA-RE----KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred ccccccccchhhhcCCcceeeecccc-hh----hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 00000 0011123344444443211 11 234443332221110 0000000 0101000 112334557
Q ss_pred cCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCC
Q 001321 491 CHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1100)
Q Consensus 491 ~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~ 570 (1100)
.++.|++.+.|+..|+|-+|+++.+..+..|. .-..|..+|+.++.+.-++.+++++.+|.+.+|++....
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~- 526 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV- 526 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccc--------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-
Confidence 89999999999999999999999988662221 124788999999999999999999999999999998851
Q ss_pred CcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCC
Q 001321 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP 650 (1100)
Q Consensus 571 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~ 650 (1100)
...--.....++.+.++-....+|++.+|-.|+|+|+.+.+++ +.+.||+..
T Consensus 527 -------------------------l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---R~f~gh~nr 578 (910)
T KOG1539|consen 527 -------------------------LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---REFWGHGNR 578 (910)
T ss_pred -------------------------eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---HHhhccccc
Confidence 1111234567888888888889999999999999999998887 666789999
Q ss_pred eEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccc
Q 001321 651 IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1100)
Q Consensus 651 V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l 705 (1100)
|++++|++++.. |++++.|++|++||..+|.+|
T Consensus 579 itd~~FS~DgrW----------------------lisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 579 ITDMTFSPDGRW----------------------LISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeeeEeCCCCcE----------------------EEEeecCCcEEEEeccCccee
Confidence 999999977655 999999999999997766554
No 33
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.9e-24 Score=240.49 Aligned_cols=554 Identities=11% Similarity=0.107 Sum_probs=319.3
Q ss_pred eeeeecCCCCCeEEEEEcCCCC---EEEEEECCCeEEEEeCC--CceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEE
Q 001321 27 RIAVHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGD--GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1100)
Q Consensus 27 ~~~~~~G~~~~v~~la~sp~~~---lLA~gs~dG~I~vw~~~--~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~ 101 (1100)
..+..-||.+.|+|+.+=|... ++++|..||+|++|-+. ....+...++ ..+.++++........+.++|+++.
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEE
Confidence 3445579999999999998887 89999999999999985 2233333344 4556666666533333347899999
Q ss_pred EEEcCCCce--eeeeecC---CCeEEEEEecCC--CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001321 102 VWSLESRSL--ACCLKWE---SNITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 102 vWd~~s~~~--l~~~~~~---~~Vt~~~~s~~~--~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
+||.+..++ +..+... .-..|++..++. -.+++|+.+..|.++.-.. +++... ..+.+|.
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~--d~f~~v-~el~GH~---------- 191 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA--DSFARV-AELEGHT---------- 191 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC--cceeEE-EEeeccc----------
Confidence 999966663 2333222 234567776643 3566777777665554332 333332 4477777
Q ss_pred CCCCeEEEEeccCCC-CCEEEEEEcCCEEEEEEccCCEEEE--EecCCcccccccccCCCCCCCCccccCCC-------C
Q 001321 175 SHQPVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGIS-------E 244 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~-g~~ll~~~~dg~V~lwdl~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~g~~~~-------~ 244 (1100)
+.|.+|+|..... ..+|++++.|..||||.+.-+.... .... .+..++.++.....+.+. -
T Consensus 192 --DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~-------~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 192 --DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED-------SLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred --hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc-------ccccccCCceeeeeeeEEEEEehhhh
Confidence 9999999964322 3467889999999999976543110 0000 000001112222222111 1
Q ss_pred CCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCC
Q 001321 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSN 324 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~ 324 (1100)
...++.-|.++.|+ |.+..|++++.|.++.+|..... +.....+.++--..+ ....+....| .
T Consensus 263 l~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~-------tGiWv~~vRlGe~gg-~a~GF~g~lw--------~ 325 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDEN-------TGIWVDVVRLGEVGG-SAGGFWGGLW--------S 325 (764)
T ss_pred hcCcccceEEEEEc-cchhhheecccCcceEEEecCCc-------cceEEEEEEeecccc-cccceeeEEE--------c
Confidence 12348899999997 99999999999999999987533 111112222211111 0111222222 2
Q ss_pred CCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeee-cCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEe
Q 001321 325 IDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI-TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFY 403 (1100)
Q Consensus 325 ~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l-~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~ 403 (1100)
+++..+++.|..+ -+.+|.+.+. ..+.+...+ .....+.|+.+.|.+.. ++....+-.-.+
T Consensus 326 ~n~~~ii~~g~~G-------g~hlWkt~d~--~~w~~~~~iSGH~~~V~dv~W~psGef--------lLsvs~DQTTRl- 387 (764)
T KOG1063|consen 326 PNSNVIIAHGRTG-------GFHLWKTKDK--TFWTQEPVISGHVDGVKDVDWDPSGEF--------LLSVSLDQTTRL- 387 (764)
T ss_pred CCCCEEEEecccC-------cEEEEeccCc--cceeeccccccccccceeeeecCCCCE--------EEEeccccceee-
Confidence 2334555555444 4455542210 011111112 22336778888777432 111111100011
Q ss_pred ecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEec------cCCCC----------chhhHhHHHh-------
Q 001321 404 DNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL------PFGGH----------SSKGLSEIAT------- 460 (1100)
Q Consensus 404 d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~------~~~~~----------~~~~~~~~~~------- 460 (1100)
+.+-+....+...-.|+.. --.++|..+... +.+.. +.+.+..+..
T Consensus 388 --------Fa~wg~q~~wHEiaRPQiH---GyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~ 456 (764)
T KOG1063|consen 388 --------FARWGRQQEWHEIARPQIH---GYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSD 456 (764)
T ss_pred --------ecccccccceeeecccccc---cccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCch
Confidence 1111001111111111111 111122111110 00000 0000000000
Q ss_pred ---------------hcccc-----C-----------------------CCcccCccccccc---CCcccccCccccCCC
Q 001321 461 ---------------FTKLH-----S-----------------------SHTQAGHIKWPLS---GGVPSPVPITKCHSV 494 (1100)
Q Consensus 461 ---------------~~~~~-----~-----------------------~~~~~~~~~~pl~---GG~~~~~~~~~~s~~ 494 (1100)
+...+ | +.....+..||-. =||..++.+++.+|+
T Consensus 457 ~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~ 536 (764)
T KOG1063|consen 457 ELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT 536 (764)
T ss_pred hcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC
Confidence 00000 0 0011223334322 278888888899999
Q ss_pred CcEEEEEecCCc-----EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 495 DRVYLAGYHDGS-----VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 495 ~~~l~Tg~~DGt-----IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
++++||++.... |++|+.+.-... ..+.+|+..||.|+||||+++|++.++|.++.+|......
T Consensus 537 gnliASaCKS~~~ehAvI~lw~t~~W~~~-----------~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 537 GNLIASACKSSLKEHAVIRLWNTANWLQV-----------QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred CCEEeehhhhCCccceEEEEEeccchhhh-----------heecccceEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 999999965543 999998765533 3478999999999999999999999999999999986542
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEee-cCCCCC
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTD-DISGSS 648 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~-~~~~~~ 648 (1100)
.. ... ......|.--|.+..|+|+++++|++|.|.+|.||.......-+..+ ....++
T Consensus 606 ~~------------------e~~---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~ 664 (764)
T KOG1063|consen 606 KD------------------EFR---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFS 664 (764)
T ss_pred ch------------------hhh---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccC
Confidence 11 111 22356899999999999999999999999999999988773222222 223589
Q ss_pred CCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 649 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 649 ~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
.+|++++|.+.... -...++++|...|.|++|.
T Consensus 665 ~aVTAv~~~~~~~~-----------------e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHN-----------------EKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred CceeeEEeeccccc-----------------cccceEEEEecccEEEEEe
Confidence 99999999844321 1135899999999999999
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.3e-26 Score=263.11 Aligned_cols=323 Identities=20% Similarity=0.262 Sum_probs=242.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee-
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC- 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~- 112 (1100)
-+..++|..|++++++||.|..|..|++|.+...... ...+ ..+..+ +=+.++|-.+.+.|-.+.....
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~------~~~l~~---~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKD------ASDLSN---IDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccc------hhhhcc---ccccccchhhhhccccCCceeEE
Confidence 3557999999999999999999999999999764221 1111 112111 2233445556777766665544
Q ss_pred eeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 113 ~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
...|.++|..+.|+|+.++|+++++|++||+|.+++....+. ..+|. .||+.++|+| .|-+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~-----y~GH~------------~PVwdV~F~P--~GyY 507 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-----YKGHL------------APVWDVQFAP--RGYY 507 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEE-----ecCCC------------cceeeEEecC--CceE
Confidence 559999999999999999999999999999999997544443 44776 8999999998 5888
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D 271 (1100)
+++++.|++.++|........+.+ || ...|.|+.|+ |+..++++|+.|
T Consensus 508 Fatas~D~tArLWs~d~~~PlRifagh------------------------------lsDV~cv~FH-PNs~Y~aTGSsD 556 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKPLRIFAGH------------------------------LSDVDCVSFH-PNSNYVATGSSD 556 (707)
T ss_pred EEecCCCceeeeeecccCCchhhhccc------------------------------ccccceEEEC-CcccccccCCCC
Confidence 999999999999999887776544 44 7789999986 999999999999
Q ss_pred CcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCc
Q 001321 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1100)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~ 351 (1100)
.++++||+.+|. .+++ +
T Consensus 557 ~tVRlWDv~~G~------------~VRi-------------F-------------------------------------- 573 (707)
T KOG0263|consen 557 RTVRLWDVSTGN------------SVRI-------------F-------------------------------------- 573 (707)
T ss_pred ceEEEEEcCCCc------------EEEE-------------e--------------------------------------
Confidence 999999997661 0100 0
Q ss_pred cccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccc
Q 001321 352 SGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIP 431 (1100)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~ 431 (1100)
T Consensus 574 -------------------------------------------------------------------------------- 573 (707)
T KOG0263|consen 574 -------------------------------------------------------------------------------- 573 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEee
Q 001321 432 ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWD 511 (1100)
Q Consensus 432 ~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd 511 (1100)
.||...+.+++++|+|++|++|+.||.|.|||
T Consensus 574 ------------------------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 574 ------------------------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred ------------------------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 01222334447889999999999999999999
Q ss_pred CCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcce-eeeccCCCceeeccC-
Q 001321 512 ATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF-LFVLETKSEVHALPE- 589 (1100)
Q Consensus 512 ~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~-~~~~~~~~~~~~i~~- 589 (1100)
+.++.+. ..+.+|.+.|.+|.||.||..||+|+.|..|++||+......... ++... .....+
T Consensus 606 l~~~~~v-----------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~----~~~~~~~ 670 (707)
T KOG0263|consen 606 LANGSLV-----------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTS----NSAITQE 670 (707)
T ss_pred cCCCcch-----------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccc----ccccccc
Confidence 9998866 567899999999999999999999999999999999765332110 00000 000000
Q ss_pred -CCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe
Q 001321 590 -GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 590 -~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs 622 (1100)
.....++..+.....+|..|.|.-....||+|.
T Consensus 671 ~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 671 NNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred CCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence 122235666777888999999998776677763
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-26 Score=236.65 Aligned_cols=325 Identities=15% Similarity=0.218 Sum_probs=248.1
Q ss_pred CCEEEEEECCCeEEE---EeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEE
Q 001321 47 QRLLAIATLDGRIKV---IGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITA 122 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~v---w~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~ 122 (1100)
+.-|+.|.-.|..+. |..+..+...+.+|..+|+.+-|.|+-..+++++.|.+|++||..++++...+ .|...|..
T Consensus 76 ~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~d 155 (406)
T KOG0295|consen 76 GDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFD 155 (406)
T ss_pred ccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeE
Confidence 344455544444444 44444556666779999999999999888888889999999999999998777 78888999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEE
Q 001321 123 FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1100)
Q Consensus 123 ~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V 202 (1100)
++|+..++++++.+.|-.+++|+++..-.+... ..+|. ..|.++.|-| .|+++++++.|.+|
T Consensus 156 i~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks----~~gh~------------h~vS~V~f~P--~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 156 ISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS----LIGHE------------HGVSSVFFLP--LGDHILSCSRDNTI 217 (406)
T ss_pred EEEecCccEEEecCCccchhheeHHHHHHHHHH----hcCcc------------cceeeEEEEe--cCCeeeecccccce
Confidence 999999999999999999999999852111111 23333 6799999988 57889999999999
Q ss_pred EEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 203 ILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 203 ~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
+.|+++++-.+. +.+| ...|..+.- ..||..+++++.|.+|++|-..+
T Consensus 218 k~We~~tg~cv~t~~~h------------------------------~ewvr~v~v-~~DGti~As~s~dqtl~vW~~~t 266 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGH------------------------------SEWVRMVRV-NQDGTIIASCSNDQTLRVWVVAT 266 (406)
T ss_pred eEEecccceeEEeccCc------------------------------hHhEEEEEe-cCCeeEEEecCCCceEEEEEecc
Confidence 999999996654 5555 445666664 48999999999999999998875
Q ss_pred CCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeee
Q 001321 282 TASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVS 361 (1100)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~ 361 (1100)
.+-.. .+.. ...++..+.|.... .
T Consensus 267 ~~~k~-------------~lR~--hEh~vEci~wap~~---~-------------------------------------- 290 (406)
T KOG0295|consen 267 KQCKA-------------ELRE--HEHPVECIAWAPES---S-------------------------------------- 290 (406)
T ss_pred chhhh-------------hhhc--cccceEEEEecccc---c--------------------------------------
Confidence 52110 0000 11122222222110 0
Q ss_pred eeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEE
Q 001321 362 RVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 441 (1100)
Q Consensus 362 ~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~ 441 (1100)
.|+
T Consensus 291 ---------------~~~-------------------------------------------------------------- 293 (406)
T KOG0295|consen 291 ---------------YPS-------------------------------------------------------------- 293 (406)
T ss_pred ---------------Ccc--------------------------------------------------------------
Confidence 000
Q ss_pred EEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEe
Q 001321 442 FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLIC 521 (1100)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~ 521 (1100)
+. ..+ .-...++++.+++.|++||+||++++.|.
T Consensus 294 ----------------i~------------------~at---------~~~~~~~~l~s~SrDktIk~wdv~tg~cL--- 327 (406)
T KOG0295|consen 294 ----------------IS------------------EAT---------GSTNGGQVLGSGSRDKTIKIWDVSTGMCL--- 327 (406)
T ss_pred ----------------hh------------------hcc---------CCCCCccEEEeecccceEEEEeccCCeEE---
Confidence 00 000 00124458999999999999999999877
Q ss_pred eeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEee
Q 001321 522 ALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL 601 (1100)
Q Consensus 522 ~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 601 (1100)
.++.+|..-|..++|+|.|+||+++.+|+++++|++... +|...+..
T Consensus 328 --------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-------------------------~cmk~~~a 374 (406)
T KOG0295|consen 328 --------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-------------------------QCMKTLEA 374 (406)
T ss_pred --------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------------eeeeccCC
Confidence 678899999999999999999999999999999999986 57888889
Q ss_pred cCcCeEEEEEcCCCCEEEEEeCCceEEEEec
Q 001321 602 VNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 602 h~~~VtsLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
|..-|++++|..+.-++++|+-|-++.+|.-
T Consensus 375 h~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 375 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999964
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=6.8e-26 Score=233.45 Aligned_cols=200 Identities=17% Similarity=0.267 Sum_probs=176.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
-||.+=|.|+|++|...++|+|+.|+.|+|||+...++. .+.+|...|..|+||+-..||++++.|+.|+.||++..++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence 488999999999999999999999999999999666555 5667999999999999999999999999999999999999
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+..+ .|-..|.|++..|..+.+++|+.|.+++|||+.+.... +.+.+|. .+|.+|.++|. +
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-----~~l~GH~------------~~V~~V~~~~~-d 289 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-----HVLSGHT------------NPVASVMCQPT-D 289 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE-----EEecCCC------------CcceeEEeecC-C
Confidence 8877 77899999999999999999999999999999863222 4588887 89999999987 5
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
+. +++|+.|++|++||+..++... .+.| .+.|.++|-+ |....++++
T Consensus 290 pq-vit~S~D~tvrlWDl~agkt~~tlt~h------------------------------kksvral~lh-P~e~~fASa 337 (460)
T KOG0285|consen 290 PQ-VITGSHDSTVRLWDLRAGKTMITLTHH------------------------------KKSVRALCLH-PKENLFASA 337 (460)
T ss_pred Cc-eEEecCCceEEEeeeccCceeEeeecc------------------------------cceeeEEecC-Cchhhhhcc
Confidence 65 9999999999999999997654 4545 7889999975 999999999
Q ss_pred EcCCcEEEEecCCC
Q 001321 269 YIDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1100)
+.|+ |+-|++..+
T Consensus 338 s~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 338 SPDN-IKQWKLPEG 350 (460)
T ss_pred CCcc-ceeccCCcc
Confidence 8876 899988655
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=5.3e-25 Score=278.50 Aligned_cols=321 Identities=13% Similarity=0.191 Sum_probs=230.0
Q ss_pred CCeEEEEeCCCceEEE------eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC----c----eeeeeecCCCeE
Q 001321 56 DGRIKVIGGDGIEGLL------ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----S----LACCLKWESNIT 121 (1100)
Q Consensus 56 dG~I~vw~~~~~~~~~------~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~----~----~l~~~~~~~~Vt 121 (1100)
+|-+++|+.....+.. ...|...|.+++|+|++.+|++++.|+.|+|||+.+. . ....+.+...|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 6778889887655432 2348899999999999999999999999999998642 1 223344557899
Q ss_pred EEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC
Q 001321 122 AFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 122 ~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg 200 (1100)
+++|++. +.++++|+.||+|+||++.. ++.. ..+.+|. ..|.+++|+|. ++.+|++|+.||
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~---~~~~~H~------------~~V~~l~~~p~-~~~~L~Sgs~Dg 598 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR--SQLV---TEMKEHE------------KRVWSIDYSSA-DPTLLASGSDDG 598 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC--CeEE---EEecCCC------------CCEEEEEEcCC-CCCEEEEEcCCC
Confidence 9999875 68999999999999999874 3333 2255665 88999999985 567799999999
Q ss_pred EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 201 ~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.|++||+.++.....+.+ ...|.++.|.+++|.++++|+.||.|++||+.
T Consensus 599 ~v~iWd~~~~~~~~~~~~------------------------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKT------------------------------KANICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred EEEEEECCCCcEEEEEec------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998876655433 45688999876789999999999999999986
Q ss_pred CCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceee
Q 001321 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1100)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~ 360 (1100)
+... +. ..+ .+
T Consensus 649 ~~~~----------~~--------------~~~------------------~~--------------------------- 659 (793)
T PLN00181 649 NPKL----------PL--------------CTM------------------IG--------------------------- 659 (793)
T ss_pred CCCc----------cc--------------eEe------------------cC---------------------------
Confidence 4310 00 000 00
Q ss_pred eeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEE
Q 001321 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVA 440 (1100)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~ 440 (1100)
|...|+.+
T Consensus 660 ------------------------------------------------------------------------h~~~V~~v 667 (793)
T PLN00181 660 ------------------------------------------------------------------------HSKTVSYV 667 (793)
T ss_pred ------------------------------------------------------------------------CCCCEEEE
Confidence 00001111
Q ss_pred EEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEE
Q 001321 441 EFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI 520 (1100)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~ 520 (1100)
.+. ++.+++|++.||+|+|||+..+...
T Consensus 668 -------------------------------------------------~f~-~~~~lvs~s~D~~ikiWd~~~~~~~-- 695 (793)
T PLN00181 668 -------------------------------------------------RFV-DSSTLVSSSTDNTLKLWDLSMSISG-- 695 (793)
T ss_pred -------------------------------------------------EEe-CCCEEEEEECCCEEEEEeCCCCccc--
Confidence 121 2347899999999999998743200
Q ss_pred eeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEe
Q 001321 521 CALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS 600 (1100)
Q Consensus 521 ~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 600 (1100)
...... ..+.+|...+++++|+|++.+||+|+.||.|++|+...........+.. .....-....
T Consensus 696 --~~~~~l-~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~------------~~~~~~~~~~ 760 (793)
T PLN00181 696 --INETPL-HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT------------IDPVSGLEVD 760 (793)
T ss_pred --cCCcce-EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc------------CCcccccccC
Confidence 000000 2367899999999999999999999999999999976542111110000 0000001123
Q ss_pred ecCcCeEEEEEcCCCCEEEEEeCCceEEEEec
Q 001321 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 601 ~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
.+...|.+++|+|++..|++|+.||+|+|||+
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 46678999999999999999999999999996
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=234.78 Aligned_cols=199 Identities=15% Similarity=0.204 Sum_probs=165.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCce---EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~---~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
-|...|--+.||++|++||+|+.|.+..+|.. ...+ .....+|..+|..+.||||.+||++|+.+..+.+||+.++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 47788999999999999999999999999987 2222 3466789999999999999999999999999999999999
Q ss_pred ceeeeeecC--CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 109 SLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 109 ~~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
...+.+.+. -.+.+++|.|++..+++|+.|++|..|++|. .+.. .-.+- +...|.+++..+
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg---n~~~---~W~gv-----------r~~~v~dlait~ 364 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG---NILG---NWEGV-----------RDPKVHDLAITY 364 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc---chhh---ccccc-----------ccceeEEEEEcC
Confidence 999888655 6899999999999999999999999999884 3321 11111 114589999944
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
||+.+++.+.|..+++++..+....... .+...|++.+- |.+|++++
T Consensus 365 --Dgk~vl~v~~d~~i~l~~~e~~~dr~li------------------------------se~~~its~~i-S~d~k~~L 411 (519)
T KOG0293|consen 365 --DGKYVLLVTVDKKIRLYNREARVDRGLI------------------------------SEEQPITSFSI-SKDGKLAL 411 (519)
T ss_pred --CCcEEEEEecccceeeechhhhhhhccc------------------------------cccCceeEEEE-cCCCcEEE
Confidence 8999999999999999998875433211 11678999995 69999999
Q ss_pred EEEcCCcEEEEecCC
Q 001321 267 VGYIDGDILLWNTST 281 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~ 281 (1100)
+--.+..+.+||++.
T Consensus 412 vnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEE 426 (519)
T ss_pred EEcccCeeEEeecch
Confidence 999999999999973
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=3.7e-24 Score=270.84 Aligned_cols=198 Identities=17% Similarity=0.265 Sum_probs=160.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--------eEEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEE
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVW 103 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--------~~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vW 103 (1100)
+|.+.|.+++|+|++++||+|+.||.|+||+.... .......+..+|.+++|++ ++.+|++++.|++|++|
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 37888999999999999999999999999997431 1122334456899999987 46899999999999999
Q ss_pred EcCCCceeeee-ecCCCeEEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001321 104 SLESRSLACCL-KWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 104 d~~s~~~l~~~-~~~~~Vt~~~~s~-~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1100)
|+.+++.+..+ .|.+.|++++|+| ++.+|++|+.||+|++|++.. +.... .+.. . ..|.+
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~---~~~~-~------------~~v~~ 622 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIG---TIKT-K------------ANICC 622 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEE---EEec-C------------CCeEE
Confidence 99999887776 7888999999997 688999999999999999874 22221 1221 1 56899
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEccCCE--EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
+.|++. +|.++++|+.||.|++||+...+ .....+| .+.|.++.|.
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h------------------------------~~~V~~v~f~- 670 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH------------------------------SKTVSYVRFV- 670 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCC------------------------------CCCEEEEEEe-
Confidence 999664 68889999999999999998764 2334455 7789999984
Q ss_pred CCCCEEEEEEcCCcEEEEecCC
Q 001321 260 SSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
++..|++++.||+|++||+..
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCC
Confidence 678999999999999999853
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-24 Score=214.06 Aligned_cols=203 Identities=14% Similarity=0.214 Sum_probs=166.1
Q ss_pred eecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCC---ceEE--EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 30 VHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDG---IEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~---~~~~--~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
.+-||++++-.+||+|- |.+||+|+.|..||||+... ..+. +--.|+..|+.++|+|.|++|++++-|.++.||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEe
Confidence 34588999999999998 89999999999999999863 2222 334799999999999999999999999999999
Q ss_pred EcCCCce--eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 104 SLESRSL--ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 104 d~~s~~~--l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.=..+.. +..+ .|+..|-|++|++++.+||++++|.+|=||..+.+ +.+.- .-.+..|. ..|-
T Consensus 89 ~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded-dEfec-~aVL~~Ht------------qDVK 154 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED-DEFEC-IAVLQEHT------------QDVK 154 (312)
T ss_pred ecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-CcEEE-Eeeecccc------------cccc
Confidence 9876643 4444 88899999999999999999999999988887732 23221 13356665 7899
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEcc-CC--E-EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVS-EA--Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~-~~--~-~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~ 256 (1100)
.+.|||+ ..+|++++.|.+|++|.-. .. . +..+-+| ...|.++.
T Consensus 155 ~V~WHPt--~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~------------------------------~~TVW~~~ 202 (312)
T KOG0645|consen 155 HVIWHPT--EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH------------------------------ENTVWSLA 202 (312)
T ss_pred EEEEcCC--cceeEEeccCCeEEEEeecCCCCeeEEEEecCc------------------------------cceEEEEE
Confidence 9999996 3459999999999999876 33 2 3344455 66899999
Q ss_pred EecCCCCEEEEEEcCCcEEEEec
Q 001321 257 WASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
|. +.|..|++++.|+++++|..
T Consensus 203 F~-~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 203 FD-NIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred ec-CCCceEEEecCCcceEeeee
Confidence 86 99999999999999999975
No 41
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-24 Score=240.36 Aligned_cols=456 Identities=12% Similarity=0.133 Sum_probs=308.6
Q ss_pred CEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC-CCeEEEEE
Q 001321 48 RLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-SNITAFSV 125 (1100)
Q Consensus 48 ~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~ 125 (1100)
+-+.+|+.+|++.||+... ..+....++...|+++.=+|--..++.+..+|+|.++|+...+.+.++.++ +.|++++|
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 5678999999999999955 455567788899999999997667888889999999999999999999887 99999999
Q ss_pred ecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEE
Q 001321 126 ISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL 204 (1100)
Q Consensus 126 s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~l 204 (1100)
..||. .|++|+..|.+.+||++. .++... ....|. +.|....|.|. .-.+++++.|..+++
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~--kkl~~v--~~nah~------------~sv~~~~fl~~--epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEK--KKLINV--TRNAHY------------GSVTGATFLPG--EPVLVTAGADNSLKV 314 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCC--Ceeeee--eecccc------------CCcccceecCC--CceEeeccCCCceeE
Confidence 99986 688888999999999985 333321 122343 78899999774 345889999999998
Q ss_pred EEccCCE----EEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 205 WDVSEAQ----IIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 205 wdl~~~~----~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
|=.+++. .++ ..|| ..+..++.|...+|.++.+++.|++++.+++
T Consensus 315 ~vfD~~dg~pR~LR~R~GH------------------------------s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~ 364 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGH------------------------------SAPPSCIRFYGSQGHFILSAKQDRTLRSFSV 364 (910)
T ss_pred EEeeCCCCcchheeeccCC------------------------------CCCchheeeeccCcEEEEecccCcchhhhhh
Confidence 8777543 222 3345 6677788887788999999999999999887
Q ss_pred CCCCCCCCccc-CCCCcceeeecc--ccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcccccc
Q 001321 280 STTASTKGQQT-GSRNNVVKLELS--SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1100)
Q Consensus 280 ~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~ 356 (1100)
......+.... .......++... ......|+..+...... .......+.+..++. ..+.+.+....
T Consensus 365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R---E~~W~Nv~~~h~~~~----~~~tW~~~n~~---- 433 (910)
T KOG1539|consen 365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR---EKEWDNVITAHKGKR----SAYTWNFRNKT---- 433 (910)
T ss_pred hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch---hhhhcceeEEecCcc----eEEEEeccCcc----
Confidence 54332211000 000111111111 11122355555322211 222333333332221 11122211110
Q ss_pred ceeeeeeeecC------CCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccc
Q 001321 357 LRCVSRVDITL------TGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1100)
Q Consensus 357 ~~~~~~~~l~~------~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 430 (1100)
.++..+.. ...+..++..+-+ +..++..+.|.+-.|+..+....-
T Consensus 434 ---~G~~~L~~~~~~~~~~~~~av~vs~CG--------NF~~IG~S~G~Id~fNmQSGi~r~------------------ 484 (910)
T KOG1539|consen 434 ---SGRHVLDPKRFKKDDINATAVCVSFCG--------NFVFIGYSKGTIDRFNMQSGIHRK------------------ 484 (910)
T ss_pred ---cccEEecCccccccCcceEEEEEeccC--------ceEEEeccCCeEEEEEcccCeeec------------------
Confidence 11122222 2445555554432 245666777777777733221111
Q ss_pred ccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEe
Q 001321 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 510 (1100)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriW 510 (1100)
.|. ..--|..++..++...-++.+++++.+|-+.+|
T Consensus 485 ----------sf~----------------------------------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 485 ----------SFG----------------------------------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW 520 (910)
T ss_pred ----------ccc----------------------------------cCccccCceeEEEecCCCceEEEccCcceEEEE
Confidence 110 000011112222455566789999999999999
Q ss_pred eCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCC
Q 001321 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1100)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~ 590 (1100)
|.....+..... + ..+++++.++.....+|.+.+|-.|+++|..+..
T Consensus 521 ~f~~k~l~~~l~---------l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k--------------------- 567 (910)
T KOG1539|consen 521 DFKKKVLKKSLR---------L---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK--------------------- 567 (910)
T ss_pred ecCCcceeeeec---------c---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh---------------------
Confidence 999887542111 2 2478999999999999999999999999998752
Q ss_pred CcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCC
Q 001321 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1100)
Q Consensus 591 ~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~ 670 (1100)
.+..|.+|...|++++|||||++|++++.|++|++||+.++.++=. .....+.+++.|++.++.
T Consensus 568 ----vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~----~~vd~~~~sls~SPngD~-------- 631 (910)
T KOG1539|consen 568 ----VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG----LLVDSPCTSLSFSPNGDF-------- 631 (910)
T ss_pred ----hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee----EecCCcceeeEECCCCCE--------
Confidence 3456789999999999999999999999999999999999988822 235889999999987765
Q ss_pred CCCCCCCCCCCceEEEEEecc-eeEEEEe
Q 001321 671 HSEREVPVNPAEEVIIVLFKD-AKISIVG 698 (1100)
Q Consensus 671 ~~~~~~~~~~~~~lL~~gt~d-g~v~v~d 698 (1100)
|++.-.| .-|++|-
T Consensus 632 --------------LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 632 --------------LATVHVDQNGIYLWS 646 (910)
T ss_pred --------------EEEEEecCceEEEEE
Confidence 8888777 6689998
No 42
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=254.96 Aligned_cols=201 Identities=17% Similarity=0.361 Sum_probs=171.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce--E-EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc-CCCc
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--G-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESRS 109 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~--~-~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~-~s~~ 109 (1100)
+...|+|+.|+|+|++||.++.|+.|++|+..... . ....+|...|..++|+|++.++++++.|.+|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 37789999999999999999999999999995544 2 234689999999999999999999999999999999 5556
Q ss_pred eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.+.++ .|...|++++|+|+++++++|+.|++|+||++.. ++.... +.+|. +.|.+++|+|
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~---l~~hs------------~~is~~~f~~-- 298 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRK---LKGHS------------DGISGLAFSP-- 298 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEEe---eeccC------------CceEEEEECC--
Confidence 66666 8999999999999999999999999999999986 555533 77777 8999999977
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEE---EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~---~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
++..|++++.|+.|++||+.++... ...++ +- .. .+++++|. |++.++
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-------~~--------------------~~-~~~~~~fs-p~~~~l 349 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA-------EN--------------------SA-PVTSVQFS-PNGKYL 349 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCC-------CC--------------------CC-ceeEEEEC-CCCcEE
Confidence 7888999999999999999999843 22222 00 02 68889975 999999
Q ss_pred EEEEcCCcEEEEecCCC
Q 001321 266 AVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~~ 282 (1100)
++++.|+.+++||+..+
T Consensus 350 l~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEecCCCeEEEEEccCC
Confidence 99999999999999755
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=3.3e-26 Score=240.10 Aligned_cols=284 Identities=17% Similarity=0.267 Sum_probs=219.8
Q ss_pred CCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee-eeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA-CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 76 ~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l-~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
+.+|..|+|.|+|++|++++..|.+.+|+..+-..- ..+.|...|+++.|++++.|+++|+.+|.|++|......-+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~- 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI- 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH-
Confidence 448999999999999999999999999998543322 233788999999999999999999999999999976422111
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCcccccccccCCCCC
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~~~~~g 233 (1100)
+..| +...|.+++|+|. |.+ +++++.||+|+|||....+. ..+.||
T Consensus 175 -----~~ah-----------h~eaIRdlafSpn-Dsk-F~t~SdDg~ikiWdf~~~kee~vL~GH--------------- 221 (464)
T KOG0284|consen 175 -----IQAH-----------HAEAIRDLAFSPN-DSK-FLTCSDDGTIKIWDFRMPKEERVLRGH--------------- 221 (464)
T ss_pred -----hhHh-----------hhhhhheeccCCC-Cce-eEEecCCCeEEEEeccCCchhheeccC---------------
Confidence 2222 1278999999995 555 99999999999999887654 334566
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEE
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1100)
.-.|.|+.|+ |.-..|++|+.|+.|++||..++..... +
T Consensus 222 ---------------gwdVksvdWH-P~kgLiasgskDnlVKlWDprSg~cl~t-------------------------l 260 (464)
T KOG0284|consen 222 ---------------GWDVKSVDWH-PTKGLIASGSKDNLVKLWDPRSGSCLAT-------------------------L 260 (464)
T ss_pred ---------------CCCcceeccC-CccceeEEccCCceeEeecCCCcchhhh-------------------------h
Confidence 6679999997 9999999999999999999976621100 0
Q ss_pred EecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEE
Q 001321 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1100)
Q Consensus 314 ~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~v 393 (1100)
.
T Consensus 261 -------------------h------------------------------------------------------------ 261 (464)
T KOG0284|consen 261 -------------------H------------------------------------------------------------ 261 (464)
T ss_pred -------------------h------------------------------------------------------------
Confidence 0
Q ss_pred EecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCc
Q 001321 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1100)
Q Consensus 394 l~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1100)
T Consensus 262 -------------------------------------------------------------------------------- 261 (464)
T KOG0284|consen 262 -------------------------------------------------------------------------------- 261 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeC-CCeEE
Q 001321 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLA 552 (1100)
Q Consensus 474 ~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd-~~~La 552 (1100)
+|...+..+.|.+++++|+|++.|.+++++|+..-.-. ....+|...|+++.|+|- -.+|+
T Consensus 262 -------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-----------~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 262 -------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-----------FTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred -------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH-----------HHhhcchhhheeecccccccccee
Confidence 00000011146677789999999999999999832211 236789999999999995 56788
Q ss_pred EEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEec
Q 001321 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 553 sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
+|+.||.|..|.+.....- ...-.+|.+.|++|+|+|-|..||+|+.|.++++|..
T Consensus 324 sgg~Dgsvvh~~v~~~~p~------------------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPL------------------------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eccCCCceEEEeccccccc------------------------cCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999999999843110 1112589999999999999999999999999999987
Q ss_pred CCc
Q 001321 633 NLL 635 (1100)
Q Consensus 633 ~~~ 635 (1100)
.-+
T Consensus 380 ~rp 382 (464)
T KOG0284|consen 380 NRP 382 (464)
T ss_pred CCC
Confidence 643
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=6.5e-24 Score=234.45 Aligned_cols=283 Identities=19% Similarity=0.331 Sum_probs=221.1
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
+.+|..+|++++|+|++.+|++++.++.|.+||+.+++..... .+...+.++.+.++++++++++.+|.|++|+++..
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~- 83 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG- 83 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-
Confidence 3479999999999999999999999999999999988766555 56678899999999999999999999999998752
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccC
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVD 229 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~ 229 (1100)
... ..+..+. ..|.++.|+| ++..+++++.+|.|.+||+.+++....+ .|
T Consensus 84 -~~~---~~~~~~~------------~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------- 134 (289)
T cd00200 84 -ECV---RTLTGHT------------SYVSSVAFSP--DGRILSSSSRDKTIKVWDVETGKCLTTLRGH----------- 134 (289)
T ss_pred -cce---EEEeccC------------CcEEEEEEcC--CCCEEEEecCCCeEEEEECCCcEEEEEeccC-----------
Confidence 222 2244443 6899999988 4665666666999999999977665443 23
Q ss_pred CCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcc
Q 001321 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1100)
Q Consensus 230 ~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (1100)
...|.+++|. |++.++++++.||.|++||+.++... .
T Consensus 135 -------------------~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~-----------~------------ 171 (289)
T cd00200 135 -------------------TDWVNSVAFS-PDGTFVASSSQDGTIKLWDLRTGKCV-----------A------------ 171 (289)
T ss_pred -------------------CCcEEEEEEc-CcCCEEEEEcCCCcEEEEEccccccc-----------e------------
Confidence 6679999986 98998888888999999998533100 0
Q ss_pred eEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcc
Q 001321 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1100)
Q Consensus 310 i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~ 389 (1100)
.+ . .
T Consensus 172 --~~---------------------------------~----~------------------------------------- 175 (289)
T cd00200 172 --TL---------------------------------T----G------------------------------------- 175 (289)
T ss_pred --eE---------------------------------e----c-------------------------------------
Confidence 00 0 0
Q ss_pred eEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCc
Q 001321 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1100)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1100)
+
T Consensus 176 -------------------------------------------~------------------------------------ 176 (289)
T cd00200 176 -------------------------------------------H------------------------------------ 176 (289)
T ss_pred -------------------------------------------C------------------------------------
Confidence 0
Q ss_pred ccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCC
Q 001321 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1100)
Q Consensus 470 ~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~ 549 (1100)
...+..+.++++++.+++++.||.|++||+..+... ..+..|...|++++|+|++.
T Consensus 177 -------------~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 177 -------------TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-----------GTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred -------------ccccceEEECCCcCEEEEecCCCcEEEEECCCCcee-----------cchhhcCCceEEEEEcCCCc
Confidence 000011245566668888888999999999876543 23446777999999999988
Q ss_pred eEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEE
Q 001321 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1100)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~v 629 (1100)
++++++.+|.|++|++... .+...+..|...|++++|+|++.+|++++.||.|++
T Consensus 233 ~~~~~~~~~~i~i~~~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 233 LLASGSEDGTIRVWDLRTG-------------------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred EEEEEcCCCcEEEEEcCCc-------------------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 9998888999999999764 134556688999999999999999999999999999
Q ss_pred Ee
Q 001321 630 LD 631 (1100)
Q Consensus 630 wD 631 (1100)
||
T Consensus 288 w~ 289 (289)
T cd00200 288 WD 289 (289)
T ss_pred cC
Confidence 96
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=5.4e-24 Score=235.07 Aligned_cols=199 Identities=22% Similarity=0.334 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l 111 (1100)
||++.|++++|+|++++|++|+.||.|++|+....+ ......|..++..+.|++++.+|++++.++.|.+||+.+++.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 789999999999999999999999999999996543 4456678899999999999999999999999999999997666
Q ss_pred eee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 112 ~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
..+ .+...|.++.+++++.+++++..+|.|++|++.. ++.. ..+..|. ..|.++.|+| ++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~---~~~~~~~------------~~i~~~~~~~--~~ 147 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCL---TTLRGHT------------DWVNSVAFSP--DG 147 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEEE---EEeccCC------------CcEEEEEEcC--cC
Confidence 665 5667899999999999999999899999999873 2333 2244444 7899999988 46
Q ss_pred CEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 191 NRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
.++++++.++.|++||+.+++....+ .| ...|.+++|. |++..+++++
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~~l~~~~ 196 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGH------------------------------TGEVNSVAFS-PDGEKLLSSS 196 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecC------------------------------ccccceEEEC-CCcCEEEEec
Confidence 75666666999999999877654433 22 5679999986 9999999999
Q ss_pred cCCcEEEEecCC
Q 001321 270 IDGDILLWNTST 281 (1100)
Q Consensus 270 ~DG~I~lWd~~~ 281 (1100)
.||.|++||+..
T Consensus 197 ~~~~i~i~d~~~ 208 (289)
T cd00200 197 SDGTIKLWDLST 208 (289)
T ss_pred CCCcEEEEECCC
Confidence 999999999864
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-23 Score=238.86 Aligned_cols=294 Identities=15% Similarity=0.169 Sum_probs=222.8
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 117 ~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
...|-.++|+|...|++++.-+|.|++|||.. +++. .++..|. ++|.+|.|||+ +-.+++|
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli---~rFdeHd------------GpVRgv~FH~~--qplFVSG 69 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLI---DRFDEHD------------GPVRGVDFHPT--QPLFVSG 69 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhh--hhHH---hhhhccC------------CccceeeecCC--CCeEEec
Confidence 35688999999999999999999999999986 4555 3466666 99999999994 6679999
Q ss_pred EcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEE
Q 001321 197 YENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1100)
Q Consensus 197 ~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~ 275 (1100)
+.|-.|++|+..+.+++ ++.|| ...|..+.|+ +.-.+|+++++|.+|+
T Consensus 70 GDDykIkVWnYk~rrclftL~GH------------------------------lDYVRt~~FH-heyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTRRCLFTLLGH------------------------------LDYVRTVFFH-HEYPWILSASDDQTIR 118 (1202)
T ss_pred CCccEEEEEecccceehhhhccc------------------------------cceeEEeecc-CCCceEEEccCCCeEE
Confidence 99999999999999875 46788 6778888876 8899999999999999
Q ss_pred EEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccc
Q 001321 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1100)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~ 355 (1100)
+|+..+.. ++.++
T Consensus 119 IWNwqsr~----------------------------------------------------------~iavl--------- 131 (1202)
T KOG0292|consen 119 IWNWQSRK----------------------------------------------------------CIAVL--------- 131 (1202)
T ss_pred EEeccCCc----------------------------------------------------------eEEEE---------
Confidence 99975430 00000
Q ss_pred cceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCC
Q 001321 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1100)
Q Consensus 356 ~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 435 (1100)
T Consensus 132 -------------------------------------------------------------------------------- 131 (1202)
T KOG0292|consen 132 -------------------------------------------------------------------------------- 131 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCC
Q 001321 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1100)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~ 515 (1100)
.||..-+.|+.|+|...++++|+-|-+|||||++.-
T Consensus 132 --------------------------------------------tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 132 --------------------------------------------TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred --------------------------------------------ecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 011111235578888889999999999999998742
Q ss_pred ceeEEe----------------eec--cceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeee
Q 001321 516 VFKLIC----------------ALD--AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 577 (1100)
Q Consensus 516 ~l~~~~----------------~l~--~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~ 577 (1100)
...... -+. ..+.+.-+.+|.-.|.-++|+|.-..+++|++|..|++|.++....
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa------- 240 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA------- 240 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-------
Confidence 211000 000 1122234889999999999999999999999999999999987521
Q ss_pred ccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEe
Q 001321 578 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1100)
Q Consensus 578 ~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs 657 (1100)
.-+-+.++|...|+++-|+|.-.++.+.++|++|+|||+...+.+.+... -.+.-..++-.
T Consensus 241 ----------------WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr---endRFW~laah 301 (1202)
T KOG0292|consen 241 ----------------WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR---ENDRFWILAAH 301 (1202)
T ss_pred ----------------eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec---cCCeEEEEEec
Confidence 01345689999999999999999999999999999999998777744432 22333344333
Q ss_pred ecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
+ ..-|+.++.|+-+.||+.+
T Consensus 302 P-----------------------~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 302 P-----------------------ELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred C-----------------------CcceeeeecCCceEEEEEc
Confidence 2 1237888888888888844
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=235.50 Aligned_cols=198 Identities=15% Similarity=0.291 Sum_probs=168.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
....|..+.|.|+|+.|.+|+..|...||+..... ..++..|..+|+++.|++++.+++|++.+|.|++|+..-.-+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 34578899999999999999999999999984432 23567899999999999999999999999999999998877766
Q ss_pred eeecC-CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 113 CLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 113 ~~~~~-~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
...|. ..|++++|+|....++++++||+|+||++........ +.+|. -.|.++.|||. .|
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v-----L~GHg------------wdVksvdWHP~-kg- 235 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV-----LRGHG------------WDVKSVDWHPT-KG- 235 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe-----eccCC------------CCcceeccCCc-cc-
Confidence 66555 8899999999999999999999999999874322222 55665 67999999995 45
Q ss_pred EEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc
Q 001321 192 RVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~ 270 (1100)
+|++++.|..|++||-+++.++. ..+| ...|..+.|. |++.+|++++.
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~H------------------------------KntVl~~~f~-~n~N~Llt~sk 284 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGH------------------------------KNTVLAVKFN-PNGNWLLTGSK 284 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhc------------------------------cceEEEEEEc-CCCCeeEEccC
Confidence 59999999999999999997654 4455 7889999986 99999999999
Q ss_pred CCcEEEEecCC
Q 001321 271 DGDILLWNTST 281 (1100)
Q Consensus 271 DG~I~lWd~~~ 281 (1100)
|..++++|+.+
T Consensus 285 D~~~kv~DiR~ 295 (464)
T KOG0284|consen 285 DQSCKVFDIRT 295 (464)
T ss_pred CceEEEEehhH
Confidence 99999999863
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=6.3e-24 Score=215.22 Aligned_cols=202 Identities=14% Similarity=0.202 Sum_probs=167.8
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
.....||.+.|.++.|+|++.++|+|+.|..|.+|+..+. ......+|+++|-.|.|.+|+..++|++.|.+|++||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 4567899999999999999999999999999999997433 34466799999999999999999999999999999999
Q ss_pred CCCceeeee-ecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 106 ESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 106 ~s~~~l~~~-~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
++|+....+ .|..-|.++....-+. ++.+|+.||++++||+.... ..+. ++. . -.++++.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t---~~~-k------------yqltAv~ 181 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKT---FEN-K------------YQLTAVG 181 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhc---ccc-c------------eeEEEEE
Confidence 999998888 5666788887554444 56688899999999987421 1111 211 1 4689999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
| .+.+..+.+|.=|+.|++||+..+... ...|| ...|+.+.- +|+|
T Consensus 182 f--~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh------------------------------~DtIt~lsl-s~~g 228 (338)
T KOG0265|consen 182 F--KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH------------------------------ADTITGLSL-SRYG 228 (338)
T ss_pred e--cccccceeeccccCceeeeccccCcceEEeecc------------------------------cCceeeEEe-ccCC
Confidence 9 667878999999999999999888765 45677 778888884 6999
Q ss_pred CEEEEEEcCCcEEEEecC
Q 001321 263 SILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~ 280 (1100)
.++.+-+-|.++++||+.
T Consensus 229 s~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred CccccccccceEEEEEec
Confidence 999999999999999985
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=4.1e-24 Score=220.42 Aligned_cols=288 Identities=14% Similarity=0.231 Sum_probs=224.8
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
.+.+|.+.|+++++-|...++++++.|++|+|||+.++++..++ .|-..|..+++++...||+++++|+.|+.||+..
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~- 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY- 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh-
Confidence 45679999999999999999999999999999999999998888 5889999999999999999999999999999874
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCccccccccc
Q 001321 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVV 228 (1100)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~ 228 (1100)
++++.. ..+|- ..|.++..||+. ..|++|+.|.+++|||+++... ....||
T Consensus 225 -nkvIR~---YhGHl------------S~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH---------- 276 (460)
T KOG0285|consen 225 -NKVIRH---YHGHL------------SGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGH---------- 276 (460)
T ss_pred -hhhHHH---hcccc------------ceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCC----------
Confidence 444432 33443 889999999963 3599999999999999999854 456677
Q ss_pred CCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCc
Q 001321 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRL 308 (1100)
Q Consensus 229 ~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 308 (1100)
...|.++.+. |..-.+++|+.|++|++||+..+...
T Consensus 277 --------------------~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~----------------------- 312 (460)
T KOG0285|consen 277 --------------------TNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTM----------------------- 312 (460)
T ss_pred --------------------CCcceeEEee-cCCCceEEecCCceEEEeeeccCcee-----------------------
Confidence 7788888865 66667999999999999998755100
Q ss_pred ceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCc
Q 001321 309 PVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHK 388 (1100)
Q Consensus 309 ~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~ 388 (1100)
+++... ...+
T Consensus 313 ----------------------~tlt~h-------------------------------kksv----------------- 322 (460)
T KOG0285|consen 313 ----------------------ITLTHH-------------------------------KKSV----------------- 322 (460)
T ss_pred ----------------------Eeeecc-------------------------------ccee-----------------
Confidence 000000 0000
Q ss_pred ceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCC
Q 001321 389 ADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSH 468 (1100)
Q Consensus 389 ~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1100)
T Consensus 323 -------------------------------------------------------------------------------- 322 (460)
T KOG0285|consen 323 -------------------------------------------------------------------------------- 322 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC
Q 001321 469 TQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN 548 (1100)
Q Consensus 469 ~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~ 548 (1100)
.+++.+|....+++++.|. |+-|++..+.+. ..+.+|+.-|.+|+...|+
T Consensus 323 ------------------ral~lhP~e~~fASas~dn-ik~w~~p~g~f~-----------~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 323 ------------------RALCLHPKENLFASASPDN-IKQWKLPEGEFL-----------QNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred ------------------eEEecCCchhhhhccCCcc-ceeccCCccchh-----------hccccccceeeeeeeccCc
Confidence 1123445555777777764 899999988765 4478999999999988776
Q ss_pred CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEE-----eecCcCeEEEEEcCCCCEEEEEeC
Q 001321 549 SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFE 623 (1100)
Q Consensus 549 ~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~h~~~VtsLafSp~g~~LavGs~ 623 (1100)
++++|++.|.+.+||+.++.+. |..... ......|++.+|...|..|++|..
T Consensus 373 -v~~~G~dng~~~fwdwksg~ny----------------------Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNY----------------------QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred -eEEEcCCceEEEEEecCcCccc----------------------ccccccccCCccccccceeEEeecccCceEEeccC
Confidence 7778999999999999986432 111111 123457899999999999999999
Q ss_pred CceEEEEecCC
Q 001321 624 CGRVAVLDMNL 634 (1100)
Q Consensus 624 dG~V~vwD~~~ 634 (1100)
|.+|.+|.-..
T Consensus 430 dKtIk~~keDe 440 (460)
T KOG0285|consen 430 DKTIKMYKEDE 440 (460)
T ss_pred CcceEEEeccc
Confidence 99999997653
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=2.8e-25 Score=238.26 Aligned_cols=202 Identities=15% Similarity=0.194 Sum_probs=171.6
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeC--CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~--~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
-.||+..|+++.|.| .+.||++|+.|+.|+||+. ++..+....+|..+|+.++|+++|..++|++-|++|++||+++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 369999999999999 8999999999999999998 4566667889999999999999999999999999999999999
Q ss_pred CceeeeeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 108 RSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
|+.+..+.....++|+.|.|++ +.+++|..|+.|+-||+.. +++.+. +..|- ++|..|.|-|
T Consensus 290 G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqe---Yd~hL------------g~i~~i~F~~ 352 (503)
T KOG0282|consen 290 GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQE---YDRHL------------GAILDITFVD 352 (503)
T ss_pred ceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccc--hHHHHH---HHhhh------------hheeeeEEcc
Confidence 9999999999999999999999 7889999999999999876 555543 33332 8899999955
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
+|.++++++.|++|+||++.....+...... . .....++.- +|++.+++
T Consensus 353 --~g~rFissSDdks~riWe~~~~v~ik~i~~~------~----------------------~hsmP~~~~-~P~~~~~~ 401 (503)
T KOG0282|consen 353 --EGRRFISSSDDKSVRIWENRIPVPIKNIADP------E----------------------MHTMPCLTL-HPNGKWFA 401 (503)
T ss_pred --CCceEeeeccCccEEEEEcCCCccchhhcch------h----------------------hccCcceec-CCCCCeeh
Confidence 8999999999999999999987655432210 0 223345553 49999999
Q ss_pred EEEcCCcEEEEecC
Q 001321 267 VGYIDGDILLWNTS 280 (1100)
Q Consensus 267 sg~~DG~I~lWd~~ 280 (1100)
+-+.|+.|.++.+.
T Consensus 402 aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTV 415 (503)
T ss_pred hhccCceEEEEecc
Confidence 99999999999753
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=208.11 Aligned_cols=293 Identities=15% Similarity=0.231 Sum_probs=222.1
Q ss_pred EEEeCCCCCCEEEEEEEeC-CCEEEEEECCCcEEEEEcCCC---ceeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001321 69 GLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESR---SLACCL--KWESNITAFSVISGSHFMYIGDENGLMS 142 (1100)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d-~~~Lls~s~d~~I~vWd~~s~---~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~ 142 (1100)
...+.+|++.|..++|+|. |..|++++.|+.|++|+..++ .+.+.+ .|...|.+++|+|.+++|++|+-|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3456789999999999998 778999999999999999853 222233 6778999999999999999999999999
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE---EEE-EecC
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIF-VGGG 218 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~---~~~-~~~~ 218 (1100)
||.-.. +.+.- .-.+.+|. ..|-+++|++ +|.+|++++.|..|-||.+.++. +.. +.+|
T Consensus 87 Iw~k~~--~efec-v~~lEGHE------------nEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 87 IWKKED--GEFEC-VATLEGHE------------NEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred EeecCC--CceeE-Eeeeeccc------------cceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 998543 33332 14578887 8999999966 79999999999999999998653 222 3334
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCccee
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVK 298 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~ 298 (1100)
...|-.+.|+ |....|++++.|++|++|+-..+.
T Consensus 150 ------------------------------tqDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dd--------------- 183 (312)
T KOG0645|consen 150 ------------------------------TQDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDD--------------- 183 (312)
T ss_pred ------------------------------cccccEEEEc-CCcceeEEeccCCeEEEEeecCCC---------------
Confidence 7788889997 999999999999999999754210
Q ss_pred eeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEcc
Q 001321 299 LELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLS 378 (1100)
Q Consensus 299 l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p 378 (1100)
.|.|.. .+
T Consensus 184 ---------------dW~c~~-------------------------tl-------------------------------- 191 (312)
T KOG0645|consen 184 ---------------DWECVQ-------------------------TL-------------------------------- 191 (312)
T ss_pred ---------------CeeEEE-------------------------Ee--------------------------------
Confidence 011100 00
Q ss_pred CCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHH
Q 001321 379 SAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEI 458 (1100)
Q Consensus 379 ~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~ 458 (1100)
T Consensus 192 -------------------------------------------------------------------------------- 191 (312)
T KOG0645|consen 192 -------------------------------------------------------------------------------- 191 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCC
Q 001321 459 ATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP 538 (1100)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~ 538 (1100)
+|+.+.+.+..|.+.|..++++++|++|+||..-+.- -.-|+.+
T Consensus 192 ---------------------~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------------~~~~sr~ 235 (312)
T KOG0645|consen 192 ---------------------DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------------SGMHSRA 235 (312)
T ss_pred ---------------------cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------------chhcccc
Confidence 0111111233677888899999999999999865322 2246678
Q ss_pred eeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeE-EEEeecCcCeEEEEEcCC-CC
Q 001321 539 VSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR-AVFSLVNSPVRALQFTSS-GA 616 (1100)
Q Consensus 539 Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~h~~~VtsLafSp~-g~ 616 (1100)
+..++|+ +..||+++.|+.++||.-...+.+.+. ..+ ..-..|...|.+++|+|. ..
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~-------------------~l~~~~~~aHe~dVNsV~w~p~~~~ 294 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSW-------------------NLLAKKEGAHEVDVNSVQWNPKVSN 294 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchH-------------------HHHHhhhcccccccceEEEcCCCCC
Confidence 9999999 779999999999999998865322111 111 123568889999999994 67
Q ss_pred EEEEEeCCceEEEEecC
Q 001321 617 KLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 617 ~LavGs~dG~V~vwD~~ 633 (1100)
+|++|++||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 89999999999999874
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=223.57 Aligned_cols=201 Identities=17% Similarity=0.265 Sum_probs=169.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-c
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-S 109 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~ 109 (1100)
-|+-..|+.+-|.|+-.++|++++|+.|++||..+.+.. .+.+|...|..++|...|.+|+++++|=.+++||.++- +
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~ 184 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR 184 (406)
T ss_pred hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH
Confidence 478889999999999999999999999999999766654 56789999999999999999999999999999999873 3
Q ss_pred e-eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 L-ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~-l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
. .....|+..|.++.|-|.++++++++.|.+|+.|++++ +--. |++++|. ..|..++. ..
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv---~t~~~h~------------ewvr~v~v--~~ 245 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCV---KTFPGHS------------EWVRMVRV--NQ 245 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc--ceeE---EeccCch------------HhEEEEEe--cC
Confidence 3 34447888999999999999999999999999999986 2222 5588776 78888888 55
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC------
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS------ 261 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd------ 261 (1100)
||+.+++++.|.+|++|-+.++.+.. ..+| +..|.++.|. |.
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~h------------------------------Eh~vEci~wa-p~~~~~~i 294 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREH------------------------------EHPVECIAWA-PESSYPSI 294 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhcc------------------------------ccceEEEEec-ccccCcch
Confidence 99999999999999999999985533 4455 5667777775 42
Q ss_pred ---------CCEEEEEEcCCcEEEEecCCC
Q 001321 262 ---------GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 ---------g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+.++.+++.|++|++||+.++
T Consensus 295 ~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 295 SEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred hhccCCCCCccEEEeecccceEEEEeccCC
Confidence 358899999999999998755
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=246.14 Aligned_cols=291 Identities=18% Similarity=0.287 Sum_probs=231.2
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc--eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~--~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
+...|...|+++.|+++|.+|++++.++.+++|+..+.+ ++..+ .|...|.+++|+|++.++++|+.|++|+||+..
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 334457799999999999999999999999999997777 55554 788899999999999999999999999999993
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCccccccc
Q 001321 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDG 226 (1100)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~ 226 (1100)
.++... ..+.+|. ..|.++.|+| +++++++|+.|++|+|||+.+++++.. .+|
T Consensus 234 -~~~~~~---~~l~gH~------------~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-------- 287 (456)
T KOG0266|consen 234 -DDGRNL---KTLKGHS------------TYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-------- 287 (456)
T ss_pred -CCCeEE---EEecCCC------------CceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeecc--------
Confidence 333444 3477887 8999999988 568899999999999999999877654 445
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1100)
...|++++| +++|..|++++.||.|++||+.++...
T Consensus 288 ----------------------s~~is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~--------------------- 323 (456)
T KOG0266|consen 288 ----------------------SDGISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKL--------------------- 323 (456)
T ss_pred ----------------------CCceEEEEE-CCCCCEEEEcCCCccEEEEECCCCcee---------------------
Confidence 778999997 599999999999999999999765100
Q ss_pred CcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCC
Q 001321 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1100)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1100)
+.. .+....
T Consensus 324 ----------~~~---------------------------~~~~~~---------------------------------- 332 (456)
T KOG0266|consen 324 ----------CLK---------------------------LLSGAE---------------------------------- 332 (456)
T ss_pred ----------eee---------------------------cccCCC----------------------------------
Confidence 000 000000
Q ss_pred CcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccC
Q 001321 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1100)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1100)
.+
T Consensus 333 -----------------------------------------------~~------------------------------- 334 (456)
T KOG0266|consen 333 -----------------------------------------------NS------------------------------- 334 (456)
T ss_pred -----------------------------------------------CC-------------------------------
Confidence 00
Q ss_pred CCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCC---CeeEEE
Q 001321 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA---PVSTLS 543 (1100)
Q Consensus 467 ~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~---~Vt~la 543 (1100)
. .+..+.++|++.++++++.|+++++||+..+.+. ....+|.. .+.+..
T Consensus 335 ----------------~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----------~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 335 ----------------A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----------GTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ----------------C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----------eeecccCCcceeEeccc
Confidence 0 0122367889999999999999999999988765 33445544 344455
Q ss_pred EeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeec-CcCeEEEEEcCCCCEEEEEe
Q 001321 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 544 fspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-~~~VtsLafSp~g~~LavGs 622 (1100)
+++.+.++.+|+.|+.|++|++.... .+..+.+| ...|..++++|..+++++++
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~-------------------------~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGG-------------------------ILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccc-------------------------hhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 67899999999999999999998741 34556788 99999999999999999998
Q ss_pred --CCceEEEEecC
Q 001321 623 --ECGRVAVLDMN 633 (1100)
Q Consensus 623 --~dG~V~vwD~~ 633 (1100)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 78999999765
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.6e-24 Score=213.34 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=170.8
Q ss_pred ecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC
Q 001321 31 HYGIPATASILAFDH---IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp---~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~ 106 (1100)
-+||..+|..++||| +|=+|++++.||.=.+-+.+....+ ...+|++.|.......|..+-++++.|-+-+|||.-
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~ 89 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV 89 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence 469999999999995 7889999999999888888766655 667899999999999998888999999999999999
Q ss_pred CCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 107 SRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 107 s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
++..++++.|...|.+++|+.+.++|++|+.+..++|++++..+-. |..+.+|. +.|..+.|..
T Consensus 90 tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap----p~E~~ght------------g~Ir~v~wc~ 153 (334)
T KOG0278|consen 90 TGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP----PKEISGHT------------GGIRTVLWCH 153 (334)
T ss_pred hhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC----chhhcCCC------------CcceeEEEec
Confidence 9999999999999999999999999999999999999998753322 23366665 8999999954
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
..+.++++..|++||+||..++..++.... ...|+++-. +++|++|.
T Consensus 154 --eD~~iLSSadd~tVRLWD~rTgt~v~sL~~------------------------------~s~VtSlEv-s~dG~ilT 200 (334)
T KOG0278|consen 154 --EDKCILSSADDKTVRLWDHRTGTEVQSLEF------------------------------NSPVTSLEV-SQDGRILT 200 (334)
T ss_pred --cCceEEeeccCCceEEEEeccCcEEEEEec------------------------------CCCCcceee-ccCCCEEE
Confidence 455699999999999999999988776654 667888886 49998665
Q ss_pred EEEcCCcEEEEecCC
Q 001321 267 VGYIDGDILLWNTST 281 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~ 281 (1100)
+++ .++|.+||..+
T Consensus 201 ia~-gssV~Fwdaks 214 (334)
T KOG0278|consen 201 IAY-GSSVKFWDAKS 214 (334)
T ss_pred Eec-CceeEEecccc
Confidence 554 57899999854
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=1e-22 Score=206.39 Aligned_cols=284 Identities=16% Similarity=0.227 Sum_probs=218.6
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|++.|..+.|+|++.++++|+.|..|.+|+...+..... .+.+|. ++|+.+.|.+ ++..++
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHs------------gAVM~l~~~~--d~s~i~ 106 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW----VLKGHS------------GAVMELHGMR--DGSHIL 106 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee----eecccc------------ceeEeeeecc--CCCEEE
Confidence 7789999999999999999999999999999664433332 356666 9999999955 888999
Q ss_pred EEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC-CEEEEEEcCC
Q 001321 195 IAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDG 272 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg-~~l~sg~~DG 272 (1100)
+++.|.+|+.||+++++... +.+| ..-|.+++ -+.-| .++.+|+.||
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~h------------------------------~~~vNs~~-p~rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKGH------------------------------TSFVNSLD-PSRRGPQLVCSGSDDG 155 (338)
T ss_pred EecCCceEEEEecccceeeehhccc------------------------------cceeeecC-ccccCCeEEEecCCCc
Confidence 99999999999999997654 5555 44455554 22334 4567789999
Q ss_pred cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
++++||+...+..+. .....++.
T Consensus 156 t~kl~D~R~k~~~~t-----------------------------------~~~kyqlt---------------------- 178 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKT-----------------------------------FENKYQLT---------------------- 178 (338)
T ss_pred eEEEEeecccchhhc-----------------------------------cccceeEE----------------------
Confidence 999999974421110 00000000
Q ss_pred ccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccccc
Q 001321 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1100)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 432 (1100)
T Consensus 179 -------------------------------------------------------------------------------- 178 (338)
T KOG0265|consen 179 -------------------------------------------------------------------------------- 178 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeC
Q 001321 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1100)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~ 512 (1100)
.+.|...+..+++|+-|+.|++||.
T Consensus 179 -------------------------------------------------------Av~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 179 -------------------------------------------------------AVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred -------------------------------------------------------EEEecccccceeeccccCceeeecc
Confidence 0012233346788999999999999
Q ss_pred CCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCc
Q 001321 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1100)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 592 (1100)
...... ..+.+|..+|+.|+.+|+|.++.+-+.|.+|++|++.... .+
T Consensus 204 r~~d~~-----------~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~---------------------p~ 251 (338)
T KOG0265|consen 204 RKNDGL-----------YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA---------------------PS 251 (338)
T ss_pred ccCcce-----------EEeecccCceeeEEeccCCCccccccccceEEEEEecccC---------------------CC
Confidence 877655 4588999999999999999999999999999999998762 23
Q ss_pred ceeEEEEeecCc----CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCC
Q 001321 593 SLCRAVFSLVNS----PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 668 (1100)
Q Consensus 593 ~~~~~~~~~h~~----~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~ 668 (1100)
.+|+..+.+|.- ....++|||++.++..|+.|..|++||..+..++| .++||-+.|.+++|.+.
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly---klpGh~gsvn~~~Fhp~--------- 319 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY---KLPGHYGSVNEVDFHPT--------- 319 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE---EcCCcceeEEEeeecCC---------
Confidence 346777777633 23467899999999999999999999999988885 45689999999999843
Q ss_pred CCCCCCCCCCCCCceEEEEEecceeEEE
Q 001321 669 PNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1100)
Q Consensus 669 ~~~~~~~~~~~~~~~lL~~gt~dg~v~v 696 (1100)
..+|.+++.|.+|++
T Consensus 320 -------------e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 320 -------------EPIILSCSSDKTIYL 334 (338)
T ss_pred -------------CcEEEEeccCceeEe
Confidence 356889999998876
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=2.7e-24 Score=230.81 Aligned_cols=295 Identities=13% Similarity=0.196 Sum_probs=228.4
Q ss_pred CCceEEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcCC-Cceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcE
Q 001321 65 DGIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES-RSLACCL-KWESNITAFSVISGSHFMYIGDENGLM 141 (1100)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s-~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V 141 (1100)
+........+|+..|+++.|.| .+.+|+|++.|+.|+|||+.. +++++++ .|..+|..++|++++..+++++-|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 3344557789999999999999 778889999999999999987 7788777 788999999999999999999999999
Q ss_pred EEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcc
Q 001321 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDL 221 (1100)
Q Consensus 142 ~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~ 221 (1100)
++||.++ |+.... +... ..+.++.|||.+ .+.+++|..|+.|+.||++++++++.+.+
T Consensus 283 KlwDtET--G~~~~~-f~~~---------------~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--- 340 (503)
T KOG0282|consen 283 KLWDTET--GQVLSR-FHLD---------------KVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDR--- 340 (503)
T ss_pred eeecccc--ceEEEE-EecC---------------CCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHh---
Confidence 9999775 665532 2222 578999999974 56799999999999999999998776554
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeec
Q 001321 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLEL 301 (1100)
Q Consensus 222 ~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~ 301 (1100)
. -+.|..+.|. ++|+.+++.++|+++++|+...+-... +..
T Consensus 341 ----h----------------------Lg~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik------------~i~ 381 (503)
T KOG0282|consen 341 ----H----------------------LGAILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIK------------NIA 381 (503)
T ss_pred ----h----------------------hhheeeeEEc-cCCceEeeeccCccEEEEEcCCCccch------------hhc
Confidence 1 6788999998 999999999999999999976431000 000
Q ss_pred cccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCC
Q 001321 302 SSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1100)
Q Consensus 302 ~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~ 381 (1100)
...
T Consensus 382 ~~~----------------------------------------------------------------------------- 384 (503)
T KOG0282|consen 382 DPE----------------------------------------------------------------------------- 384 (503)
T ss_pred chh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhh
Q 001321 382 ATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATF 461 (1100)
Q Consensus 382 ~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~ 461 (1100)
T Consensus 385 -------------------------------------------------------------------------------- 384 (503)
T KOG0282|consen 385 -------------------------------------------------------------------------------- 384 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCC--Ce
Q 001321 462 TKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA--PV 539 (1100)
Q Consensus 462 ~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~--~V 539 (1100)
....+++..+|.+..++.-+.|..|.|+.+.... .++. . ....+|.. --
T Consensus 385 ---------------------~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-----r~nk--k-K~feGh~vaGys 435 (503)
T KOG0282|consen 385 ---------------------MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-----RLNK--K-KRFEGHSVAGYS 435 (503)
T ss_pred ---------------------hccCcceecCCCCCeehhhccCceEEEEeccccc-----ccCH--h-hhhcceeccCce
Confidence 0001233566777788888888888888654322 1110 0 11345533 35
Q ss_pred eEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC-CEE
Q 001321 540 STLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKL 618 (1100)
Q Consensus 540 t~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-~~L 618 (1100)
..+.|||||++|++|+.+|.|.+|+|.+.. .+..+..|.++++.+.|+|.. ..|
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k-------------------------l~~~lkah~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTK-------------------------LVSKLKAHDQPCIGVDWHPVEPSKV 490 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhh-------------------------hhhccccCCcceEEEEecCCCccee
Confidence 668999999999999999999999998852 356678999999999999954 579
Q ss_pred EEEeCCceEEEEe
Q 001321 619 AVGFECGRVAVLD 631 (1100)
Q Consensus 619 avGs~dG~V~vwD 631 (1100)
|+++.||.|++||
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999997
No 57
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=3.9e-21 Score=214.30 Aligned_cols=594 Identities=14% Similarity=0.150 Sum_probs=352.1
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCC---EEEEEECCCcEEEEE
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQG---FLISITNDNEIQVWS 104 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~---~Lls~s~d~~I~vWd 104 (1100)
..+.|.+......++.| +.++|.|. ...|-+||.... .+..+.+|.++|+|++|.|... ++++++.|++|++|.
T Consensus 8 a~~Vgc~R~~~v~sw~~-~~~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~ 85 (764)
T KOG1063|consen 8 AISVGCNRVPKVSSWGP-GGLVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWK 85 (764)
T ss_pred eeeeccccccccccccc-cceEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEE
Confidence 44556665555566644 45677776 578999998555 6667889999999999999876 899999999999999
Q ss_pred cCCCceeeeeecCC-CeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 105 LESRSLACCLKWES-NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 105 ~~s~~~l~~~~~~~-~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
++...+.+.+..++ .+.|+++......+.+...+++|++|+...+.--+.. ..++.... --..|++
T Consensus 86 l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~-~~rf~~k~------------~ipLcL~ 152 (764)
T KOG1063|consen 86 LRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLA-VLRFEIKE------------AIPLCLA 152 (764)
T ss_pred EeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeeh-heehhhhh------------HhhHHHh
Confidence 99666665554443 6777777766666666689999999998432211111 11222110 2235566
Q ss_pred eccCCCCC-EEEEEEcCCEEEEEEccCC---EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 184 PHPNSSGN-RVLIAYENALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 184 f~P~~~g~-~ll~~~~dg~V~lwdl~~~---~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
+.|. .+. .+++|+.+..|.++.-... ++..+.|| ...|.++.|..
T Consensus 153 ~~~~-~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH------------------------------~DWIrsl~f~~ 201 (764)
T KOG1063|consen 153 ALKN-NKTFLLACGGSKFVVDLYSSSADSFARVAELEGH------------------------------TDWIRSLAFAR 201 (764)
T ss_pred hhcc-CCcEEEEecCcceEEEEeccCCcceeEEEEeecc------------------------------chhhhhhhhhc
Confidence 6562 344 3456777778888876654 34557788 66677777764
Q ss_pred CCC--CEEEEEEcCCcEEEEecCCCCCCCC------cccCCCCccee----eecc------ccCCCcceEEEEecccccC
Q 001321 260 SSG--SILAVGYIDGDILLWNTSTTASTKG------QQTGSRNNVVK----LELS------SAERRLPVIVLHWSTNKES 321 (1100)
Q Consensus 260 pdg--~~l~sg~~DG~I~lWd~~~~~~~~~------~~~~~~~~~~~----l~~~------~~~~~~~i~~~~w~~~~~~ 321 (1100)
+.+ -+|++++.|..||+|.+.-...... .....+.++.. +.+. -..+..=+..++|..
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p---- 277 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP---- 277 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc----
Confidence 444 4788999999999999865542221 11111111111 1100 000112234444443
Q ss_pred CCCCCceEEEEeCCCCCCcceEEEEEcCCccccccce-eeeeeee--cCCCcceeEEEccCCCCCCCCCcceEEEEecCC
Q 001321 322 RSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLR-CVSRVDI--TLTGSFADMILLSSAGATVGNHKADLFVLTSPG 398 (1100)
Q Consensus 322 ~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~-~~~~~~l--~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G 398 (1100)
.+..|+++..|. .+.+|.......+. +..++.- ...+.+++..+.|.+. .++.-...|
T Consensus 278 ----~~~~LLSASaDk-------smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--------~ii~~g~~G 338 (764)
T KOG1063|consen 278 ----EGLDLLSASADK-------SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--------VIIAHGRTG 338 (764)
T ss_pred ----chhhheecccCc-------ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--------EEEEecccC
Confidence 223333443333 34444433222211 1111111 1122466666666531 333334556
Q ss_pred eeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccc--
Q 001321 399 QLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW-- 476 (1100)
Q Consensus 399 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 476 (1100)
-++.|... .+..|
T Consensus 339 g~hlWkt~-----------------------------------------------------------------d~~~w~~ 353 (764)
T KOG1063|consen 339 GFHLWKTK-----------------------------------------------------------------DKTFWTQ 353 (764)
T ss_pred cEEEEecc-----------------------------------------------------------------Cccceee
Confidence 66665410 11112
Q ss_pred -cccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEe
Q 001321 477 -PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN 555 (1100)
Q Consensus 477 -pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~ 555 (1100)
|..+||...+..+...|.|.+|+|.+.|-|-|++-.-... +. +. ++. ...-|...++|++|-+....+++|.
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-~~-wH---Eia--RPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-QE-WH---EIA--RPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccc-cc-ee---eec--ccccccccceeeehccCCceeeecc
Confidence 3556776666777899999999999999999998654222 11 10 111 1234777999999999877888899
Q ss_pred cCceEEEEEecCCC-----------CCcc--------e--------eeec---cCCCc----ee----------------
Q 001321 556 EFGLVYIYNLNGSL-----------DAKN--------F--------LFVL---ETKSE----VH---------------- 585 (1100)
Q Consensus 556 ~dG~V~lw~l~~~~-----------~~~~--------~--------~~~~---~~~~~----~~---------------- 585 (1100)
+...+|+|+....- .... . .+.+ ++.++ ..
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 99999999865430 0000 0 0000 00000 00
Q ss_pred -eccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCC-----ceEEEEecCCceEEEEeecCCCCCCCeEEEEEeec
Q 001321 586 -ALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC-----GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 659 (1100)
Q Consensus 586 -~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~d-----G~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~ 659 (1100)
.+++--.+.-+..+-+|.-.|++|+.||+|+++|++... ..|++|+..+-... ..+.+|+-.|+.|+|+++
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGHSLTVTRLAFSPD 583 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heecccceEEEEEEECCC
Confidence 000111111124466899999999999999999998754 46899999876555 345679999999999976
Q ss_pred ccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEecccCCCCccchhhhh
Q 001321 660 KNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQS 739 (1100)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 739 (1100)
+.. |++.+.|.++.+|....+... .+++..+.. +
T Consensus 584 g~~----------------------LLsvsRDRt~sl~~~~~~~~~------------e~~fa~~k~--------H---- 617 (764)
T KOG1063|consen 584 GRY----------------------LLSVSRDRTVSLYEVQEDIKD------------EFRFACLKA--------H---- 617 (764)
T ss_pred CcE----------------------EEEeecCceEEeeeeecccch------------hhhhccccc--------c----
Confidence 655 999999999999993221110 111111100 0
Q ss_pred hhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEecccce--e--ec---cccc---c
Q 001321 740 AEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVI--Q--KV---KHKN---R 808 (1100)
Q Consensus 740 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~--~--~~---~~~~---~ 808 (1100)
. .| +=.+++. +.+.++++||.| .|.||..+... . ++ ++.. .
T Consensus 618 ---------t-RI---IWdcsW~---------------pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 618 ---------T-RI---IWDCSWS---------------PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA 669 (764)
T ss_pred ---------c-eE---EEEcccC---------------cccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence 0 01 0011111 115669999977 99999998772 2 21 1111 2
Q ss_pred cceeeeeecCCceEEEEEEEecCcEEEeecCCh
Q 001321 809 CCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDL 841 (1100)
Q Consensus 809 c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l 841 (1100)
..|.+... .++..++++++++|.|.+|..+.-
T Consensus 670 v~~~~~~~-~e~~~~vavGle~GeI~l~~~~~~ 701 (764)
T KOG1063|consen 670 VAYLPVDH-NEKGDVVAVGLEKGEIVLWRRKRE 701 (764)
T ss_pred EEeecccc-ccccceEEEEecccEEEEEecccc
Confidence 23333222 355668999999999999998843
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=3.7e-24 Score=219.48 Aligned_cols=190 Identities=14% Similarity=0.252 Sum_probs=157.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE-EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
..|.|+.|+ ...+++|..|++|+|||....++ ..+.+|++.|-|++|... .++++++|.+|+|||+++++.+.++
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tge~l~tl 273 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTGEPLNTL 273 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccCCchhhHH
Confidence 368899997 45689999999999999976655 477899999999999755 7999999999999999999998887
Q ss_pred -ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 -~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|...|..+.|+ ..+|++.+.|.+|.||+++....... ...+.+|. .+|..|.| +.+++
T Consensus 274 ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~--rrVLvGHr------------AaVNvVdf----d~kyI 333 (499)
T KOG0281|consen 274 IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITL--RRVLVGHR------------AAVNVVDF----DDKYI 333 (499)
T ss_pred hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHH--HHHHhhhh------------hheeeecc----ccceE
Confidence 667889999886 67899999999999999986331111 12244554 88999999 45689
Q ss_pred EEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++++.|.++++|+..+.+.+. .-+| ...|.|+-+ .|+++++|++|+
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gH------------------------------kRGIAClQY---r~rlvVSGSSDn 380 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGH------------------------------KRGIACLQY---RDRLVVSGSSDN 380 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcc------------------------------cccceehhc---cCeEEEecCCCc
Confidence 999999999999999998765 4455 666777774 489999999999
Q ss_pred cEEEEecCCC
Q 001321 273 DILLWNTSTT 282 (1100)
Q Consensus 273 ~I~lWd~~~~ 282 (1100)
+|++||++.|
T Consensus 381 tIRlwdi~~G 390 (499)
T KOG0281|consen 381 TIRLWDIECG 390 (499)
T ss_pred eEEEEecccc
Confidence 9999999765
No 59
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=9.8e-22 Score=218.16 Aligned_cols=518 Identities=12% Similarity=0.104 Sum_probs=299.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC--CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee
Q 001321 34 IPATASILAFDHIQRLLAIATL--DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~--dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l 111 (1100)
|.+.++|+||+|.++++++.+. |-.|-+|+........--.-...|+.++|+.||.|.++++ ..+|++|.++.++..
T Consensus 121 HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~Ky 199 (1080)
T KOG1408|consen 121 HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKY 199 (1080)
T ss_pred ccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccc
Confidence 6779999999999999986554 3466778764333222222345799999999999999988 788999999776511
Q ss_pred -eeeecC---------------------C---------------------------------CeEEEEEecCCCEEEEEe
Q 001321 112 -CCLKWE---------------------S---------------------------------NITAFSVISGSHFMYIGD 136 (1100)
Q Consensus 112 -~~~~~~---------------------~---------------------------------~Vt~~~~s~~~~~l~~G~ 136 (1100)
..+... + ...|+++ ..+++++|+
T Consensus 200 kdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgC 277 (1080)
T KOG1408|consen 200 KDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGC 277 (1080)
T ss_pred cCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEee
Confidence 000000 0 1223333 467999999
Q ss_pred CCCcEEEEEEecCC--Ceeeeeceeecccccc------cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 137 ENGLMSVIKYDADE--GKLFQLPYNISADALS------EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 137 ~dG~V~Iw~~d~~~--~~l~~~~~~i~~~~~~------~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
.+|.|++++-.+.. +++.. +..+..+..+ ...+..........++.|.|. ...|.+.|.|..+.|||++
T Consensus 278 a~g~vrlFnp~tL~y~~Tlpr-~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet--~~klscVYndhSlYvWDvr 354 (1080)
T KOG1408|consen 278 AKGMVRLFNPETLDYAGTLPR-SHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET--TDKLSCVYNDHSLYVWDVR 354 (1080)
T ss_pred ccceeeecCcchhhhcccccc-ccccccchhhcccccccccccCcccCCceeEEEecCC--CceEEEEEcCceEEEEecc
Confidence 99999998855421 11111 0001000000 001111222234567889764 4459999999999999998
Q ss_pred CC----EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCC
Q 001321 209 EA----QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 209 ~~----~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~ 284 (1100)
.- +.....-|....|.-+.. + .+-..-++.| . |.+- ++|+++||+|++||++.+..
T Consensus 355 D~~kvgk~~s~lyHS~ciW~Ve~~--------------p---~nv~~~~~ac-l-p~~c-F~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 355 DVNKVGKCSSMLYHSACIWDVENL--------------P---CNVHSPTAAC-L-PRGC-FTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred ccccccceeeeeeccceeeeeccc--------------c---ccccCccccc-C-Cccc-eeEecCCCcEEEeecccccc
Confidence 74 333344453333321110 0 0022234455 2 5554 89999999999999986421
Q ss_pred CCC-cccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeee
Q 001321 285 TKG-QQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRV 363 (1100)
Q Consensus 285 ~~~-~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~ 363 (1100)
... +...-.....++... ++ ..+.+.-.+...+ .... .-
T Consensus 415 n~vyrRNils~~l~ki~y~--------------------d~-~~q~~~d~~~~~f-----------dka~--------~s 454 (1080)
T KOG1408|consen 415 NQVYRRNILSANLSKIPYE--------------------DS-TQQIMHDASAGIF-----------DKAL--------VS 454 (1080)
T ss_pred cceeecccchhhhhcCccc--------------------cC-chhhhhhccCCcc-----------cccc--------hh
Confidence 110 000000000110000 00 0000000000000 0000 01
Q ss_pred eecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEE
Q 001321 364 DITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFM 443 (1100)
Q Consensus 364 ~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~ 443 (1100)
.+...-.+..++.+|+.. .+.....-|.+.+|+..+++.+.... .|++.|.|..+.
T Consensus 455 ~~d~r~G~R~~~vSp~gq--------hLAsGDr~GnlrVy~Lq~l~~~~~~e----------------AHesEilcLeyS 510 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQ--------HLASGDRGGNLRVYDLQELEYTCFME----------------AHESEILCLEYS 510 (1080)
T ss_pred hcCcccceEEEEECCCcc--------eecccCccCceEEEEehhhhhhhhee----------------cccceeEEEeec
Confidence 112222456666777643 34444556788888865554444333 377888888875
Q ss_pred eccCCCCchhhHhHHHhh-ccccCCCcccCcccccc---cCCcccccCccccCCCC--cEEEEEecCCcEEEeeCCCCce
Q 001321 444 LLPFGGHSSKGLSEIATF-TKLHSSHTQAGHIKWPL---SGGVPSPVPITKCHSVD--RVYLAGYHDGSVRIWDATYPVF 517 (1100)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl---~GG~~~~~~~~~~s~~~--~~l~Tg~~DGtIriWd~~~~~l 517 (1100)
....+ +++.+. .+....++.-...++-+ ..||...+..+.|.-.+ ...++++.|.+|.+--.....-
T Consensus 511 ~p~~~-------~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 511 FPVLT-------NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred Cchhh-------hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence 43211 111111 11111111111122211 23555555555554444 6678888888875543321110
Q ss_pred eEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEE
Q 001321 518 KLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRA 597 (1100)
Q Consensus 518 ~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 597 (1100)
-.++.-.. ..-....+..|+..|..++++++..|..|+||++..+.... ...
T Consensus 584 g~~f~r~t------~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k----------------------~FK 635 (1080)
T KOG1408|consen 584 GRLFPRHT------QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK----------------------SFK 635 (1080)
T ss_pred ceeccccc------cccccceEEEeeeCCCcceEEEEecccceEEEeccccceee----------------------eec
Confidence 00010000 00112468899999999999999999999999998863221 112
Q ss_pred EEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCC
Q 001321 598 VFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVP 677 (1100)
Q Consensus 598 ~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~ 677 (1100)
-.+.|.|...-+...|.|.+||+.+.|.++.++|.-+++++ ....||++.|+.+.|..+-..
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv---A~m~GHsE~VTG~kF~nDCkH--------------- 697 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV---AQMTGHSEAVTGVKFLNDCKH--------------- 697 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh---hhhcCcchheeeeeecccchh---------------
Confidence 23467788889999999999999999999999999999988 344589999999999977666
Q ss_pred CCCCceEEEEEecceeEEEEeCCC
Q 001321 678 VNPAEEVIIVLFKDAKISIVGGSS 701 (1100)
Q Consensus 678 ~~~~~~lL~~gt~dg~v~v~d~~~ 701 (1100)
|++.+.||.|+||....
T Consensus 698 -------lISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 698 -------LISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -------heeecCCceEEEEECch
Confidence 99999999999999554
No 60
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.7e-23 Score=218.07 Aligned_cols=290 Identities=14% Similarity=0.181 Sum_probs=220.2
Q ss_pred eeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 113 ~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
...|...|.-+.|+++|+|||+++.|.+.-||.+..+.. +.. ..++.+|. .+|..|.|+| |.++
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl-~~tlvgh~------------~~V~yi~wSP--Ddry 283 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKL-KKTLVGHS------------QPVSYIMWSP--DDRY 283 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eee-eeeeeccc------------CceEEEEECC--CCCe
Confidence 336788999999999999999999999999999876554 322 25677776 8999999999 4555
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
+++++.+..+.+||+.++.....+.+. . ...++|.||. |||..+++|+.|+
T Consensus 284 LlaCg~~e~~~lwDv~tgd~~~~y~~~--------~--------------------~~S~~sc~W~-pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 284 LLACGFDEVLSLWDVDTGDLRHLYPSG--------L--------------------GFSVSSCAWC-PDGFRFVTGSPDR 334 (519)
T ss_pred EEecCchHheeeccCCcchhhhhcccC--------c--------------------CCCcceeEEc-cCCceeEecCCCC
Confidence 777777777899999999988776651 0 4568899997 9999999999999
Q ss_pred cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
.+..||..... . -.|.+.. .
T Consensus 335 ~i~~wdlDgn~-------------~---------------~~W~gvr---~----------------------------- 354 (519)
T KOG0293|consen 335 TIIMWDLDGNI-------------L---------------GNWEGVR---D----------------------------- 354 (519)
T ss_pred cEEEecCCcch-------------h---------------hcccccc---c-----------------------------
Confidence 99999985320 0 0111100 0
Q ss_pred ccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccccc
Q 001321 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1100)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 432 (1100)
..+
T Consensus 355 ----------------~~v------------------------------------------------------------- 357 (519)
T KOG0293|consen 355 ----------------PKV------------------------------------------------------------- 357 (519)
T ss_pred ----------------cee-------------------------------------------------------------
Confidence 001
Q ss_pred CCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeC
Q 001321 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1100)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~ 512 (1100)
..++.++||+.+++...|..|++++.
T Consensus 358 ------------------------------------------------------~dlait~Dgk~vl~v~~d~~i~l~~~ 383 (519)
T KOG0293|consen 358 ------------------------------------------------------HDLAITYDGKYVLLVTVDKKIRLYNR 383 (519)
T ss_pred ------------------------------------------------------EEEEEcCCCcEEEEEecccceeeech
Confidence 12246677778888889999999998
Q ss_pred CCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCc
Q 001321 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1100)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 592 (1100)
.+...+. +-....+|++++.|.|++++.+--.+..+++||+..+.
T Consensus 384 e~~~dr~------------lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~----------------------- 428 (519)
T KOG0293|consen 384 EARVDRG------------LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK----------------------- 428 (519)
T ss_pred hhhhhhc------------cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-----------------------
Confidence 8765431 11222589999999999999999999999999999651
Q ss_pred ceeEEEEeecCcC--eEEEEEcC-CCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCC
Q 001321 593 SLCRAVFSLVNSP--VRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1100)
Q Consensus 593 ~~~~~~~~~h~~~--VtsLafSp-~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~ 669 (1100)
.+..+.+|+.. |.--+|-- +..++|+|++|+.|+||+..+++.+ ..++||+..|.+++|++..
T Consensus 429 --lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll---~~LsGHs~~vNcVswNP~~--------- 494 (519)
T KOG0293|consen 429 --LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL---AVLSGHSKTVNCVSWNPAD--------- 494 (519)
T ss_pred --HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee---EeecCCcceeeEEecCCCC---------
Confidence 23345566443 22334443 4479999999999999999999988 5677999999999998543
Q ss_pred CCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 670 NHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 670 ~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
..++++|++||+|++|..
T Consensus 495 ------------p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 495 ------------PEMFASASDDGTIRIWGP 512 (519)
T ss_pred ------------HHHhhccCCCCeEEEecC
Confidence 356999999999999983
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=2.2e-22 Score=209.88 Aligned_cols=316 Identities=16% Similarity=0.232 Sum_probs=229.4
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
.-.+.+..+.|+..|.++... .+++++|+.||.++||+.. |+.. ..+.+|. ++|.+++|.
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~---Gk~~---~~~~Ght------------~~ik~v~~v 153 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK---GKSI---KTIVGHT------------GPIKSVAWV 153 (423)
T ss_pred CCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC---CceE---EEEecCC------------cceeeeEEE
Confidence 345667777888888888776 8999999999999999987 5555 3377777 888888875
Q ss_pred cC-CCCCEEEEEEcCCEEEEEEccCCEEE-----EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 186 PN-SSGNRVLIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 186 P~-~~g~~ll~~~~dg~V~lwdl~~~~~~-----~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
-. ....++++++.|.++++|-++.+... ...|| ...|.++.- .
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH------------------------------k~~V~sVsv-~ 202 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH------------------------------KRSVDSVSV-D 202 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc------------------------------ccceeEEEe-c
Confidence 43 23346999999999999999887542 22356 788999885 5
Q ss_pred CCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCC
Q 001321 260 SSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGS 339 (1100)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~ 339 (1100)
++|.++++|+.|..|.+|+.++..... .....+. -.+......
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~~~-~E~~s~~-rrk~~~~~~----------------------------------- 245 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEEDE-LESSSNR-RRKKQKREK----------------------------------- 245 (423)
T ss_pred CCCCeEEeecccceeeecccCCCcccc-ccccchh-hhhhhhhhh-----------------------------------
Confidence 999999999999999999943221000 0000000 000000000
Q ss_pred cceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCC
Q 001321 340 EEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKP 419 (1100)
Q Consensus 340 ~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~ 419 (1100)
..
T Consensus 246 -----------~~------------------------------------------------------------------- 247 (423)
T KOG0313|consen 246 -----------EG------------------------------------------------------------------- 247 (423)
T ss_pred -----------cc-------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEE
Q 001321 420 SVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYL 499 (1100)
Q Consensus 420 ~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~ 499 (1100)
.....-...+||...++.+.+++ ...+.
T Consensus 248 ---------------------------------------------------~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 248 ---------------------------------------------------GTRTPLVTLEGHTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred ---------------------------------------------------cccCceEEecccccceeeEEEcC-CCceE
Confidence 00000002234444444444555 55889
Q ss_pred EEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeecc
Q 001321 500 AGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1100)
Q Consensus 500 Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~ 579 (1100)
+++.|.+|+.||+..+.+.. ..-.+.++.|++++|...+||+|+.|..++|||-+.+.
T Consensus 276 S~SwDHTIk~WDletg~~~~------------~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---------- 333 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETGGLKS------------TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---------- 333 (423)
T ss_pred eecccceEEEEEeeccccee------------eeecCcceeEeecccccceeeecCCCCceeecCCCCCC----------
Confidence 99999999999999888652 11233589999999999999999999999999988752
Q ss_pred CCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC-CEEEEEeCCceEEEEecCCce-EEEEeecCCCCCCCeEEEEEe
Q 001321 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS-VLFFTDDISGSSSPIISMTWT 657 (1100)
Q Consensus 580 ~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-~~LavGs~dG~V~vwD~~~~~-~~~~~~~~~~~~~~V~sl~fs 657 (1100)
+......|.+|+..|.++.|+|.. ..|++|+.|++++|||+++.+ .+|... +|.+.|.++.|.
T Consensus 334 ------------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~---~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 334 ------------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA---GHNDKVLSVDWN 398 (423)
T ss_pred ------------CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec---cCCceEEEEecc
Confidence 223567789999999999999955 678999999999999999987 776554 499999999998
Q ss_pred ecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
. ..++++|+.|..|+++..
T Consensus 399 ~-----------------------~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 399 E-----------------------GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred C-----------------------CceEEeccCcceEEEecc
Confidence 2 356999999999999983
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=218.11 Aligned_cols=283 Identities=17% Similarity=0.274 Sum_probs=217.6
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
...+|++++|+|...+=+++.+.-.+.+++..+.....++ .+...|.++.|-.||+++++|+..|.|+|+++.+ +..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHH
Confidence 3468999999997777777777888999999998887766 7888999999999999999999999999999553 222
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~ 232 (1100)
.. .+.+|. .+|..+.|+|. +++.+++|+.|+.+++||+.++.+. ...+|
T Consensus 103 LR---~~~ah~------------apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h-------------- 152 (487)
T KOG0310|consen 103 LR---QLYAHQ------------APVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYVQAELSGH-------------- 152 (487)
T ss_pred HH---HHhhcc------------CceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEEEEEecCC--------------
Confidence 22 255555 89999999996 5677889999999999999999864 45566
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEE
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 312 (1100)
...|.|..|.+.++..++||+.||.|++||..... .++
T Consensus 153 ----------------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------------------------~~v-- 190 (487)
T KOG0310|consen 153 ----------------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------------------------SRV-- 190 (487)
T ss_pred ----------------cceeEeeccccCCCeEEEecCCCceEEEEEeccCC------------------------cee--
Confidence 78899999886667789999999999999986430 000
Q ss_pred EEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEE
Q 001321 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1100)
Q Consensus 313 ~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~ 392 (1100)
..+....++.+++++|
T Consensus 191 --------------------------------------------------~elnhg~pVe~vl~lp-------------- 206 (487)
T KOG0310|consen 191 --------------------------------------------------VELNHGCPVESVLALP-------------- 206 (487)
T ss_pred --------------------------------------------------EEecCCCceeeEEEcC--------------
Confidence 1122222333333333
Q ss_pred EEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccC
Q 001321 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1100)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1100)
T Consensus 207 -------------------------------------------------------------------------------- 206 (487)
T KOG0310|consen 207 -------------------------------------------------------------------------------- 206 (487)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEE
Q 001321 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1100)
Q Consensus 473 ~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~La 552 (1100)
.+.++++++. ..|||||+.++.... .....|...||||++..++..|.
T Consensus 207 ---------------------sgs~iasAgG-n~vkVWDl~~G~qll----------~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 207 ---------------------SGSLIASAGG-NSVKVWDLTTGGQLL----------TSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ---------------------CCCEEEEcCC-CeEEEEEecCCceeh----------hhhhcccceEEEEEeecCCceEe
Confidence 3336776654 469999999665320 22345888999999999999999
Q ss_pred EEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEec
Q 001321 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 553 sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
+|+.||.|++|++.+. +.+. -...++||-+++.+|+++.+++|-.+|.+.+-+.
T Consensus 255 S~sLD~~VKVfd~t~~-------------------------Kvv~-s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNY-------------------------KVVH-SWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ecccccceEEEEccce-------------------------EEEE-eeecccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999997764 1222 2367899999999999999999999998877644
Q ss_pred C
Q 001321 633 N 633 (1100)
Q Consensus 633 ~ 633 (1100)
.
T Consensus 309 ~ 309 (487)
T KOG0310|consen 309 E 309 (487)
T ss_pred h
Confidence 3
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.90 E-value=3.2e-23 Score=212.62 Aligned_cols=280 Identities=17% Similarity=0.260 Sum_probs=213.5
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
....|-|+++..+ .++|+..|++|+|||..+...+..+ .|.+.|.|+.++ .+.+++|++|.+|+|||+.+ +..
T Consensus 196 ~skgVYClQYDD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t--ge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT--GEP 269 (499)
T ss_pred cCCceEEEEecch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC--Cch
Confidence 4457888888655 4999999999999999999887766 899999999986 45999999999999999986 444
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE----EecCCcccccccccC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF----VGGGKDLQLKDGVVD 229 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~----~~~~~~~~~~~~l~~ 229 (1100)
... +-+|. .+|..+.|+ ..++++++.|.++++||+.+...+. +.||
T Consensus 270 l~t---lihHc------------eaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH----------- 319 (499)
T KOG0281|consen 270 LNT---LIHHC------------EAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH----------- 319 (499)
T ss_pred hhH---Hhhhc------------ceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-----------
Confidence 322 44444 889999993 3359999999999999998765322 3455
Q ss_pred CCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcc
Q 001321 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLP 309 (1100)
Q Consensus 230 ~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (1100)
...|..+-|. .++|++++.|.+|++|++.+++....
T Consensus 320 -------------------rAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRt---------------------- 355 (499)
T KOG0281|consen 320 -------------------RAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRT---------------------- 355 (499)
T ss_pred -------------------hhheeeeccc---cceEEEecCCceEEEEeccceeeehh----------------------
Confidence 7778888854 56999999999999999876521110
Q ss_pred eEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcc
Q 001321 310 VIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKA 389 (1100)
Q Consensus 310 i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~ 389 (1100)
+ .|
T Consensus 356 ---l------------------~g-------------------------------------------------------- 358 (499)
T KOG0281|consen 356 ---L------------------NG-------------------------------------------------------- 358 (499)
T ss_pred ---h------------------hc--------------------------------------------------------
Confidence 0 00
Q ss_pred eEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCc
Q 001321 390 DLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHT 469 (1100)
Q Consensus 390 ~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1100)
|.-.|.
T Consensus 359 -------------------------------------------HkRGIA------------------------------- 364 (499)
T KOG0281|consen 359 -------------------------------------------HKRGIA------------------------------- 364 (499)
T ss_pred -------------------------------------------ccccce-------------------------------
Confidence 000000
Q ss_pred ccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCC
Q 001321 470 QAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS 549 (1100)
Q Consensus 470 ~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~ 549 (1100)
+..-.++++++|+.|.+||+||++.|.|. .-+.+|..-|.|+.| |..
T Consensus 365 --------------------ClQYr~rlvVSGSSDntIRlwdi~~G~cL-----------RvLeGHEeLvRciRF--d~k 411 (499)
T KOG0281|consen 365 --------------------CLQYRDRLVVSGSSDNTIRLWDIECGACL-----------RVLEGHEELVRCIRF--DNK 411 (499)
T ss_pred --------------------ehhccCeEEEecCCCceEEEEeccccHHH-----------HHHhchHHhhhheee--cCc
Confidence 12234558999999999999999999876 347899999999999 567
Q ss_pred eEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEE
Q 001321 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1100)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~v 629 (1100)
.+++|..||.|+||++...... ....+-.|+..+..|.|.|.-|.|. ...+++.+.|.+|-|
T Consensus 412 rIVSGaYDGkikvWdl~aaldp----------------ra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi 473 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAALDP----------------RAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI 473 (499)
T ss_pred eeeeccccceEEEEecccccCC----------------cccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE
Confidence 8999999999999999875211 0012223666778899999999996 556899999999999
Q ss_pred EecCCce
Q 001321 630 LDMNLLS 636 (1100)
Q Consensus 630 wD~~~~~ 636 (1100)
||...+.
T Consensus 474 WdFl~~~ 480 (499)
T KOG0281|consen 474 WDFLNGP 480 (499)
T ss_pred EEcCCCC
Confidence 9987653
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.4e-21 Score=191.30 Aligned_cols=201 Identities=10% Similarity=0.110 Sum_probs=173.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
.-++.+.|.++.|+-+|+++.+++.|..||+|+. .+.....-.+|...|..++.+.|...+++++.|..+.+||+.+|+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence 3567889999999999999999999999999998 555666778999999999999999999999999999999999999
Q ss_pred eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.+..+ .|.++|.++.|+.....+++|+-|.+|++||-....-+..|. +.... +.|.+|..
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi---ldea~------------D~V~Si~v---- 153 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI---LDEAK------------DGVSSIDV---- 153 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch---hhhhc------------CceeEEEe----
Confidence 99998 788999999999999999999999999999988754444432 22212 78999988
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
.+..++.|+.||+++.||++.|.... ++ ..+|+|++| +++|+..+.
T Consensus 154 ~~heIvaGS~DGtvRtydiR~G~l~sDy~--------------------------------g~pit~vs~-s~d~nc~La 200 (307)
T KOG0316|consen 154 AEHEIVAGSVDGTVRTYDIRKGTLSSDYF--------------------------------GHPITSVSF-SKDGNCSLA 200 (307)
T ss_pred cccEEEeeccCCcEEEEEeecceeehhhc--------------------------------CCcceeEEe-cCCCCEEEE
Confidence 34459999999999999999987643 44 347999997 599999999
Q ss_pred EEcCCcEEEEecCCCC
Q 001321 268 GYIDGDILLWNTSTTA 283 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~~ 283 (1100)
++-|++|++-|-.+|+
T Consensus 201 ~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGK 216 (307)
T ss_pred eeccceeeecccchhH
Confidence 9999999999988774
No 65
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=4.1e-20 Score=198.90 Aligned_cols=415 Identities=15% Similarity=0.162 Sum_probs=284.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-----EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-----LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-----~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
+..+...+|.|...-|.+-...|.+..|...+.... +....+.-|.+++|.+| +-+++++++|.|.||+..+.+
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTNR 278 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCce
Confidence 345678999998877666667899999998655332 44445568999999999 569999999999999998877
Q ss_pred eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
..... .|++.|.++....++.+|- |..|..|..|+-+- .++. +..+|... ++|..|+-..
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y--~k~r--~~elPe~~------------G~iRtv~e~~-- 339 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY--RKLR--ETELPEQF------------GPIRTVAEGK-- 339 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc--cccc--cccCchhc------------CCeeEEecCC--
Confidence 65443 8999999999999998877 99999999998332 2222 24466554 8899998843
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
+. +++|.....|.-=+++.+-....++| ......++- +|+...++|+
T Consensus 340 -~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh------------------------------~delwgla~-hps~~q~~T~ 386 (626)
T KOG2106|consen 340 -GD-ILVGTTRNFILQGTLENGFTLTVQGH------------------------------GDELWGLAT-HPSKNQLLTC 386 (626)
T ss_pred -Cc-EEEeeccceEEEeeecCCceEEEEec------------------------------ccceeeEEc-CCChhheeec
Confidence 33 89999998877777888877888888 445566664 4999999999
Q ss_pred EcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEc
Q 001321 269 YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSL 348 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l 348 (1100)
+.|+.+++|+-. . +.+ .-..
T Consensus 387 gqdk~v~lW~~~-k----------------~~w--------------t~~~----------------------------- 406 (626)
T KOG2106|consen 387 GQDKHVRLWNDH-K----------------LEW--------------TKII----------------------------- 406 (626)
T ss_pred cCcceEEEccCC-c----------------eeE--------------EEEe-----------------------------
Confidence 999999999811 0 000 0000
Q ss_pred CCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCc
Q 001321 349 EWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPG 428 (1100)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~ 428 (1100)
..++....+.|. ..+.+.+..|.++++|......+..
T Consensus 407 -------------------~d~~~~~~fhps---------g~va~Gt~~G~w~V~d~e~~~lv~~--------------- 443 (626)
T KOG2106|consen 407 -------------------EDPAECADFHPS---------GVVAVGTATGRWFVLDTETQDLVTI--------------- 443 (626)
T ss_pred -------------------cCceeEeeccCc---------ceEEEeeccceEEEEecccceeEEE---------------
Confidence 000111111111 1344445556776666332111100
Q ss_pred ccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEE
Q 001321 429 VIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR 508 (1100)
Q Consensus 429 ~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIr 508 (1100)
.+. .+++++++++|+|.+||.|+.|+.|+
T Consensus 444 -------------------------------------------------~~d--~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 444 -------------------------------------------------HTD--NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred -------------------------------------------------Eec--CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 000 22346678999999999999999999
Q ss_pred EeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeecc
Q 001321 509 IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP 588 (1100)
Q Consensus 509 iWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~ 588 (1100)
||.++...... . .--..|..+|++|+|++|+++|.+-+.|-.+..|.-.......+ +.+++
T Consensus 473 iy~Vs~~g~~y--~-------r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts----------~kDvk 533 (626)
T KOG2106|consen 473 IYRVSANGRKY--S-------RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS----------VKDVK 533 (626)
T ss_pred EEEECCCCcEE--E-------EeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce----------eccee
Confidence 99988765331 1 11223447999999999999999999999999994333211100 11221
Q ss_pred CCCcceeEEEE----eecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCcc
Q 001321 589 EGKISLCRAVF----SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1100)
Q Consensus 589 ~~~~~~~~~~~----~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~ 664 (1100)
.. .+.|..-| ..+..-|.+++-+...++||+|.+.|.|+++...-.+..--.+.+.+|++-|++++|....
T Consensus 534 W~-t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d---- 608 (626)
T KOG2106|consen 534 WA-TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD---- 608 (626)
T ss_pred ee-eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC----
Confidence 11 11122211 3467778899999999999999999999999876433332233445799999999999433
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
+. |++.+.|.+|..|+
T Consensus 609 -----------------~~-li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 609 -----------------SH-LISTGKDTSIMQWR 624 (626)
T ss_pred -----------------ce-EEecCCCceEEEEE
Confidence 23 44444999999998
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=6.1e-23 Score=212.52 Aligned_cols=200 Identities=12% Similarity=0.133 Sum_probs=161.3
Q ss_pred eeeecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 28 IAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
.....||-..|.|+|=+|.+ ..+|+|+.||.|+|||+.. .+......|.+.|+.|++.. ...++++.|.+|+.|-+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34568999999999999999 8999999999999999955 45567789999999999998 55999999999999998
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
+.. .++++...+.++.+..+.....+++++++ |.|||...+. ..+. +.+-. +.|.++.|+
T Consensus 137 ~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~--Pv~s---mswG~------------Dti~svkfN 196 (433)
T KOG0268|consen 137 DGP-PLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN--PVSS---MSWGA------------DSISSVKFN 196 (433)
T ss_pred cCC-cceeeeccccccccccccccccccccCce--eeecccccCC--ccce---eecCC------------CceeEEecC
Confidence 874 77777777888888888888888888776 5779986432 1111 33222 679999999
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
|.. -..|+++.+|+.|.|||+.++.++....- .-+-..+||. |++..+
T Consensus 197 pvE-TsILas~~sDrsIvLyD~R~~~Pl~KVi~------------------------------~mRTN~Iswn-PeafnF 244 (433)
T KOG0268|consen 197 PVE-TSILASCASDRSIVLYDLRQASPLKKVIL------------------------------TMRTNTICWN-PEAFNF 244 (433)
T ss_pred CCc-chheeeeccCCceEEEecccCCccceeee------------------------------eccccceecC-ccccce
Confidence 974 34477788999999999999877643321 3345578997 999999
Q ss_pred EEEEcCCcEEEEecCC
Q 001321 266 AVGYIDGDILLWNTST 281 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~ 281 (1100)
++|.+|-.|..+|+..
T Consensus 245 ~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 245 VAANEDHNLYTYDMRN 260 (433)
T ss_pred eeccccccceehhhhh
Confidence 9999999999999853
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=9.4e-22 Score=211.86 Aligned_cols=308 Identities=16% Similarity=0.258 Sum_probs=222.0
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeecee--ecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN--ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~--i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
.+...|++++++|.|-++++|+-|-+|++||+......+.. |+ .|.. ...|.+++|+| .|..
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~--fr~l~P~E------------~h~i~sl~ys~--Tg~~ 228 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS--FRQLQPCE------------THQINSLQYSV--TGDQ 228 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh--hhccCccc------------ccccceeeecC--CCCe
Confidence 44567999999999999999999999999999864433331 11 1222 26799999988 5777
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC-CCEEEEEEcC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-GSILAVGYID 271 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd-g~~l~sg~~D 271 (1100)
|++.+.....+|+|-+...+...... +..+. .+ .....+...++|.||+ |+ ...++|++.|
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KG-DQYI~-Dm---------------~nTKGHia~lt~g~wh-P~~k~~FlT~s~D 290 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKG-DQYIR-DM---------------YNTKGHIAELTCGCWH-PDNKEEFLTCSYD 290 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeecc-chhhh-hh---------------hccCCceeeeeccccc-cCcccceEEecCC
Confidence 99999999999999888776544322 11111 11 1122236789999998 65 4578999999
Q ss_pred CcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCc
Q 001321 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1100)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~ 351 (1100)
|++|+||+.+.... +.|+.--
T Consensus 291 gtlRiWdv~~~k~q---------------------------------------------------------~qVik~k-- 311 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQ---------------------------------------------------------LQVIKTK-- 311 (641)
T ss_pred CcEEEEecCCchhh---------------------------------------------------------eeEEeec--
Confidence 99999998643100 0011100
Q ss_pred cccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccc
Q 001321 352 SGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIP 431 (1100)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~ 431 (1100)
T Consensus 312 -------------------------------------------------------------------------------- 311 (641)
T KOG0772|consen 312 -------------------------------------------------------------------------------- 311 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEee
Q 001321 432 ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWD 511 (1100)
Q Consensus 432 ~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd 511 (1100)
..||.-.....++++++++.||+|..||+|.+|+
T Consensus 312 ----------------------------------------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 312 ----------------------------------------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred ----------------------------------------------cCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 0000000112227889999999999999999999
Q ss_pred CCCCceeEEeeeccceeeeeecCCCC--CeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccC
Q 001321 512 ATYPVFKLICALDAEVQGIEVAGSRA--PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1100)
Q Consensus 512 ~~~~~l~~~~~l~~~~~~~~l~~h~~--~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~ 589 (1100)
.......+.+.+ -..|.. .|+||+||+||++|++-+.|+.++|||++....
T Consensus 346 ~~~~~v~p~~~v--------k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk------------------- 398 (641)
T KOG0772|consen 346 KGSRTVRPVMKV--------KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK------------------- 398 (641)
T ss_pred cCCcccccceEe--------eeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc-------------------
Confidence 865554432222 235655 899999999999999999999999999987522
Q ss_pred CCcceeEEEEeec--CcCeEEEEEcCCCCEEEEEeC------CceEEEEecCCceEEEEeecCCCCCCCeEEEEEeeccc
Q 001321 590 GKISLCRAVFSLV--NSPVRALQFTSSGAKLAVGFE------CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKN 661 (1100)
Q Consensus 590 ~~~~~~~~~~~~h--~~~VtsLafSp~g~~LavGs~------dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~ 661 (1100)
++.++.+. .-+-|.++|||+.++|++|+. .|++++||..+...++.+.. ....|..+.|.+--.
T Consensus 399 -----pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i---~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 399 -----PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI---STASVVRCLWHPKLN 470 (641)
T ss_pred -----chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC---CCceEEEEeecchhh
Confidence 33333343 345788999999999999864 48899999999999987776 477888999986665
Q ss_pred CccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 662 THSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
. |++|+.||.+.||-
T Consensus 471 Q----------------------i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 471 Q----------------------IFAGSGDGTAHVYY 485 (641)
T ss_pred h----------------------eeeecCCCceEEEE
Confidence 5 99999999999986
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=7.4e-21 Score=189.76 Aligned_cols=162 Identities=17% Similarity=0.312 Sum_probs=133.7
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
+++.+|+.|++.+.|..+|.+|.+|+.|.++.||--..|+.+-++ .|.+.|+|++++.+.++|++|+.|.++++|++..
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 567789999999999999999999999999999999899888887 8999999999999999999999999999999886
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-----CEEEEEEccCCE-------E-EEE
Q 001321 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-----ALVILWDVSEAQ-------I-IFV 215 (1100)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-----g~V~lwdl~~~~-------~-~~~ 215 (1100)
|+.... ++.+ .+|..+.|++ .|++++....+ +.|.++|++... + ...
T Consensus 84 --Gk~la~-~k~~---------------~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 84 --GKQLAT-WKTN---------------SPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred --CcEEEE-eecC---------------CeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 555422 3333 7899999977 68855555443 478889887432 1 111
Q ss_pred ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 216 ~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
..+ ...++++.|. |-+++|++|++||.|..||+.++
T Consensus 144 ~t~------------------------------~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 144 PTP------------------------------DSKITSALWG-PLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred cCC------------------------------ccceeeeeec-ccCCEEEEecCCCcEEEEEcccC
Confidence 111 6789999996 99999999999999999999765
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.8e-21 Score=206.58 Aligned_cols=163 Identities=14% Similarity=0.190 Sum_probs=131.1
Q ss_pred eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee----ee---------------eecCCCeEEEEEecC
Q 001321 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA----CC---------------LKWESNITAFSVISG 128 (1100)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l----~~---------------~~~~~~Vt~~~~s~~ 128 (1100)
+......|..+|.+|+++|+..++++++.+++|.=|++.+++.. .. ..|...|.+++++++
T Consensus 134 ~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 134 DFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred cceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 34566789999999999999999999999999999999988633 11 134457999999999
Q ss_pred CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 129 ~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
++|+++|..+..|.||+.++. ... +.+++|. +.|.+++| +.....+++++.|+.|++|+++
T Consensus 214 gkylatgg~d~~v~Iw~~~t~--ehv---~~~~ghr------------~~V~~L~f--r~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL--EHV---KVFKGHR------------GAVSSLAF--RKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred CcEEEecCCCceEEEecCccc--chh---hcccccc------------cceeeeee--ecCccceeeeecCCceEEEehh
Confidence 999999999999999998862 222 2367776 99999999 4455569999999999999999
Q ss_pred CCEE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 209 EAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 209 ~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.... ...+|| +..|.++.-. ..++.+-+|+.|+++++|++.
T Consensus 275 ~~s~vetlyGH------------------------------qd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~ 316 (479)
T KOG0299|consen 275 QLSYVETLYGH------------------------------QDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP 316 (479)
T ss_pred HhHHHHHHhCC------------------------------ccceeeechh-cccceEEeccccceeEEEecc
Confidence 8755 457888 6677777733 556656666699999999874
No 70
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.2e-21 Score=188.00 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=96.9
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1100)
.|++|+.||++|.||+..+.+. .+.-..+|++++|++|++.+..++.|+++++.|-+++.
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~-------------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk------- 216 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLS-------------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK------- 216 (307)
T ss_pred EEEeeccCCcEEEEEeecceee-------------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH-------
Confidence 6889999999999999988855 23334599999999999999999999999999987752
Q ss_pred eccCCCceeeccCCCcceeEEEEeecCcCe--EEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCC-eEE
Q 001321 577 VLETKSEVHALPEGKISLCRAVFSLVNSPV--RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSP-IIS 653 (1100)
Q Consensus 577 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~V--tsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~-V~s 653 (1100)
++..+.+|+..- ...++++....+++|++||.|++||+....++.... -++.. |++
T Consensus 217 ------------------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~---~~~~v~v~d 275 (307)
T KOG0316|consen 217 ------------------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS---VVSTVIVTD 275 (307)
T ss_pred ------------------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec---cCCceeEEe
Confidence 345566776553 345677777899999999999999999998883332 24444 567
Q ss_pred EEEeecccC
Q 001321 654 MTWTEFKNT 662 (1100)
Q Consensus 654 l~fs~~~~~ 662 (1100)
+.+.+...+
T Consensus 276 l~~hp~~~~ 284 (307)
T KOG0316|consen 276 LSCHPTMDD 284 (307)
T ss_pred eecccCccc
Confidence 776644433
No 71
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=6.2e-21 Score=199.13 Aligned_cols=212 Identities=15% Similarity=0.227 Sum_probs=160.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCC---EEEEEECCCcEEEEEcCCCce
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQG---FLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~---~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
|+.=|+++... .+.+.+|+.||.++||+..+.......+|.++|+.+++..... .+++++.|.++++|-++.+..
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 34444554444 7899999999999999999999999999999999888865333 599999999999999987754
Q ss_pred e-----eeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc-----ccCCC----CCCC
Q 001321 111 A-----CCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE-----KAGFP----LLSH 176 (1100)
Q Consensus 111 l-----~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~-----~~~~~----~~~~ 176 (1100)
. ....|...|-++++.+++..+++|+.|.+|.||+...+....... ..-.....++ ....| .+|.
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~-~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES-SSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccc-cchhhhhhhhhhhcccccCceEEecccc
Confidence 2 233788999999999999999999999999999943321110000 0000000000 00111 3455
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~ 256 (1100)
.+|.+|.|.+ .+.+++++.|-+|+.||+.++..+..... .+.+.++.
T Consensus 261 ~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~------------------------------~ksl~~i~ 307 (423)
T KOG0313|consen 261 EPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT------------------------------NKSLNCIS 307 (423)
T ss_pred cceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec------------------------------CcceeEee
Confidence 9999999955 44499999999999999999987654432 67888999
Q ss_pred EecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 257 WASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.. |...+|++|+.|..|++||..++
T Consensus 308 ~~-~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 308 YS-PLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred cc-cccceeeecCCCCceeecCCCCC
Confidence 75 89999999999999999998755
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=4e-21 Score=191.66 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=175.3
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
...-||..+++-+.|+.+|.||.+++.|..+-||-..+.|.+ ...+|++.|.++....+..+|++++.|+++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 345689999999999999999999999999999988555555 6779999999999999999999999999999999999
Q ss_pred CceeeeeecCCCeEEEEEecCCCEEEEEeC-----CCcEEEEEEecCCCe-eeeec-eeecccccccccCCCCCCCCCeE
Q 001321 108 RSLACCLKWESNITAFSVISGSHFMYIGDE-----NGLMSVIKYDADEGK-LFQLP-YNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-----dG~V~Iw~~d~~~~~-l~~~~-~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
|+.+.....+..|..+.|++++++++...+ .+.|.++++..+... ....| ++++.+. ..++
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~------------skit 151 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD------------SKIT 151 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc------------ccee
Confidence 999999999999999999999998887765 467888877643311 11122 3566554 7899
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
...|.| .+..|++|.++|.|.+||+.++....... +.+ ...|+.+++ +|
T Consensus 152 ~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~--------~~h--------------------~~~Ind~q~-s~ 200 (327)
T KOG0643|consen 152 SALWGP--LGETIIAGHEDGSISIYDARTGKELVDSD--------EEH--------------------SSKINDLQF-SR 200 (327)
T ss_pred eeeecc--cCCEEEEecCCCcEEEEEcccCceeeech--------hhh--------------------ccccccccc-cC
Confidence 999988 57779999999999999999985432211 122 678999997 59
Q ss_pred CCCEEEEEEcCCcEEEEecCCC
Q 001321 261 SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+..++++++.|.+-++||..+-
T Consensus 201 d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 201 DRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CcceEEecccCccceeeeccce
Confidence 9999999999999999998765
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=210.47 Aligned_cols=177 Identities=16% Similarity=0.267 Sum_probs=132.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE------EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL------LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~------~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
-|+...|++++++|.|..+++|+.|-.|++||+.+.... +......+|..++|++.|..+++++....++|+|-
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR 243 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR 243 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence 455778999999999999999999999999999776433 22234558999999999999999998888999886
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
...+++... .|.-+|.++ +.-.+|. ..++|..||
T Consensus 244 dG~~~~e~~-----------------------KGDQYI~Dm-----------~nTKGHi------------a~lt~g~wh 277 (641)
T KOG0772|consen 244 DGFEIVEFS-----------------------KGDQYIRDM-----------YNTKGHI------------AELTCGCWH 277 (641)
T ss_pred CCceeeeee-----------------------ccchhhhhh-----------hccCCce------------eeeeccccc
Confidence 554443322 222233333 2245555 779999999
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCE-EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
|...+. +++++.||++||||+...+ ..+++.++.... .+-.+++++|. |+|.+
T Consensus 278 P~~k~~-FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g------------------------~Rv~~tsC~~n-rdg~~ 331 (641)
T KOG0772|consen 278 PDNKEE-FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG------------------------KRVPVTSCAWN-RDGKL 331 (641)
T ss_pred cCcccc-eEEecCCCcEEEEecCCchhheeEEeeccCCC------------------------cccCceeeecC-CCcch
Confidence 986555 9999999999999998754 233433311111 15567888986 99999
Q ss_pred EEEEEcCCcEEEEecC
Q 001321 265 LAVGYIDGDILLWNTS 280 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~ 280 (1100)
|++||.||+|.+|+..
T Consensus 332 iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKG 347 (641)
T ss_pred hhhcccCCceeeeecC
Confidence 9999999999999973
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.7e-21 Score=197.47 Aligned_cols=209 Identities=15% Similarity=0.207 Sum_probs=169.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-------------------eEEEeCCCCCCEEEEEEEeCCCE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-------------------EGLLISPSQLPYKNLEFLQNQGF 90 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-------------------~~~~~~~h~~~V~~l~fs~d~~~ 90 (1100)
...-|.+...|.+|+|||.++|+|+.|..|+|+|.... -...+..|..+|++|.|.|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 34457888999999999999999999999999997521 11245578999999999999999
Q ss_pred EEEEECCCcEEEEEcCCC---ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 91 LISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 91 Lls~s~d~~I~vWd~~s~---~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
|+|++.|++|+++|+..- +....++...+|.+++|+|.|.++++|.+..+++++++.+.+.-+.. .|.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----nPd----- 257 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----NPD----- 257 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec----Ccc-----
Confidence 999999999999999764 33344466688999999999999999999999999998863222211 121
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
..+.+.|++|.+++ .|++.++++.||.|++||--+++++..++. .|
T Consensus 258 -----~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------AH------------------- 303 (430)
T KOG0640|consen 258 -----DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGN--------AH------------------- 303 (430)
T ss_pred -----cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHh--------hc-------------------
Confidence 22348999999977 688899999999999999888887766543 11
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
....|+++.|. .||++|++.+.|..+++|.+.++
T Consensus 304 ~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 304 GGSEVCSAVFT-KNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CCceeeeEEEc-cCCeEEeecCCcceeeeeeecCC
Confidence 05678999975 99999999999999999999877
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.8e-22 Score=203.63 Aligned_cols=284 Identities=17% Similarity=0.182 Sum_probs=206.0
Q ss_pred CCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCce
Q 001321 480 GGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1100)
Q Consensus 480 GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~ 559 (1100)
-|..+...|+.|+||+++|++|+-||.|.+||..++.++.-..... . -.+--+..+|.|++|+.|+.+||+|+.||.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA--q-d~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA--Q-DNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh--h-cceeecccceEEEeecccHHHhhccCcCCc
Confidence 3555556778999999999999999999999999998762222111 1 113346679999999999999999999999
Q ss_pred EEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEe-ecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEE
Q 001321 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~ 638 (1100)
+++|++.++ +|+..|. +|...|++|.||.|+..+.+++-|-+|+|--+.+++++
T Consensus 287 IKvWri~tG-------------------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 287 IKVWRIETG-------------------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred EEEEEEecc-------------------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence 999999986 3555554 89999999999999999999999999999999999988
Q ss_pred EEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCcee
Q 001321 639 FFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIA 718 (1100)
Q Consensus 639 ~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~ 718 (1100)
..+.||++.|+...|+.+|.. +++++.||+|.||+..+++.+.+-...+..-. .
T Consensus 342 ---KEfrGHsSyvn~a~ft~dG~~----------------------iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~-v 395 (508)
T KOG0275|consen 342 ---KEFRGHSSYVNEATFTDDGHH----------------------IISASSDGTVKVWHGKTTECLSTFKPLGTDYP-V 395 (508)
T ss_pred ---HHhcCccccccceEEcCCCCe----------------------EEEecCCccEEEecCcchhhhhhccCCCCccc-c
Confidence 455689999999999987766 99999999999999988887765422221111 1
Q ss_pred EEEEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEecc
Q 001321 719 ISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRK 797 (1100)
Q Consensus 719 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~ 797 (1100)
..+..+ ++ ++.++++|... .+.+..+.
T Consensus 396 nsv~~~-------------------------------------------------PK---npeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 396 NSVILL-------------------------------------------------PK---NPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred eeEEEc-------------------------------------------------CC---CCceEEEEcCCCeEEEEecc
Confidence 111111 11 16677788765 88888887
Q ss_pred ccee------eccccc--ccceeeeeecCCceEEEEEEEecCcEEEeecCC--hhhhhhccccceeeeeeccccccceee
Q 001321 798 SVIQ------KVKHKN--RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD--LELVMESSLMSILRWNFKANMDKTISA 867 (1100)
Q Consensus 798 ~~~~------~~~~~~--~c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~--l~~~~~~~~~~~l~~~~~~~~~~~~~~ 867 (1100)
.++. |..... .||.+| ++.++-|+..||.+-.|++-+ ||..+-.+-.-.+...++++-.-...+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSp------kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSP------KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecC------CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence 6644 222222 345555 788999999999999998877 664443333333333333332222246
Q ss_pred c-CCcEEEE
Q 001321 868 D-NGQITLA 875 (1100)
Q Consensus 868 s-~gq~~l~ 875 (1100)
| ||-+=||
T Consensus 498 sEDgllKLW 506 (508)
T KOG0275|consen 498 SEDGLLKLW 506 (508)
T ss_pred cccchhhhc
Confidence 7 7765554
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=1.1e-21 Score=193.43 Aligned_cols=285 Identities=18% Similarity=0.231 Sum_probs=219.6
Q ss_pred EEeCCCCCCEEEEEEEe---CCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 001321 70 LLISPSQLPYKNLEFLQ---NQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIK 145 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~---d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~ 145 (1100)
+.-.+|..||..|+|+| +|-+|++++.|+.-.+-+-+++.-+-++ .|.+.|+....+.+.-..+++..|-+-+||+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 34578999999999986 8889999999999999999999988887 8999999999999999999999999999998
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE--EEEecCCcccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQL 223 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~--~~~~~~~~~~~ 223 (1100)
--+.+ .+. .+. |. .-|.+++| +.+.++|++|+.+..+||||+...+. ..+.+|
T Consensus 88 a~tgd-elh----sf~-hk------------hivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~gh----- 142 (334)
T KOG0278|consen 88 AVTGD-ELH----SFE-HK------------HIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH----- 142 (334)
T ss_pred hhhhh-hhh----hhh-hh------------heeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCC-----
Confidence 53311 111 011 11 56899999 44777899999999999999987543 344555
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccc
Q 001321 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1100)
Q Consensus 224 ~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (1100)
.+.|..+.|. ...+.|++...|++||+||..++.. +..|....
T Consensus 143 -------------------------tg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~-----------v~sL~~~s 185 (334)
T KOG0278|consen 143 -------------------------TGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTE-----------VQSLEFNS 185 (334)
T ss_pred -------------------------CCcceeEEEe-ccCceEEeeccCCceEEEEeccCcE-----------EEEEecCC
Confidence 8889999986 6777899989999999999987611 11010000
Q ss_pred cCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCC
Q 001321 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1100)
Q Consensus 304 ~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~ 383 (1100)
T Consensus 186 -------------------------------------------------------------------------------- 185 (334)
T KOG0278|consen 186 -------------------------------------------------------------------------------- 185 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcc
Q 001321 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1100)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1100)
T Consensus 186 -------------------------------------------------------------------------------- 185 (334)
T KOG0278|consen 186 -------------------------------------------------------------------------------- 185 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEE
Q 001321 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1100)
Q Consensus 464 ~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~la 543 (1100)
.+..+..++++++|.+++ -++|.+||+.+-.+...+.+ ...|.+.+
T Consensus 186 ---------------------~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~------------P~nV~SAS 231 (334)
T KOG0278|consen 186 ---------------------PVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM------------PCNVESAS 231 (334)
T ss_pred ---------------------CCcceeeccCCCEEEEec-CceeEEeccccccceeeccC------------cccccccc
Confidence 001124566776666654 46799999887654422222 24688899
Q ss_pred EeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEE-eecCcCeEEEEEcCCCCEEEEEe
Q 001321 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 544 fspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~~~VtsLafSp~g~~LavGs 622 (1100)
++|+...++.|+.|+.++.||+.+... +..+ .+|.+||.||.|||+|..-|+|+
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeE-------------------------i~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEE-------------------------IGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCce-------------------------eeecccCCCCceEEEEECCCCceeeccC
Confidence 999999999999999999999988621 2222 79999999999999999999999
Q ss_pred CCceEEEEecCCc
Q 001321 623 ECGRVAVLDMNLL 635 (1100)
Q Consensus 623 ~dG~V~vwD~~~~ 635 (1100)
+||+|+||.+.-+
T Consensus 287 EDGTirlWQt~~~ 299 (334)
T KOG0278|consen 287 EDGTIRLWQTTPG 299 (334)
T ss_pred CCceEEEEEecCC
Confidence 9999999998744
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.3e-21 Score=198.98 Aligned_cols=206 Identities=13% Similarity=0.155 Sum_probs=168.6
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE---------EeCCCCCCEEEEEEEeCCCEEEEEECCCc
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---------LISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~---------~~~~h~~~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
...||-.+-+-|..|+||+++|++|+.||.|.||+.....+. ...-+..+|.|+.|+.|...|++++.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 456888999999999999999999999999999998543322 22346789999999999999999999999
Q ss_pred EEEEEcCCCceeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 100 IQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
|+||.+++|.++..+ .|...|+|+.|+.++..+++++-|.+|+|.-+.. |+.... +.+|. .
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKE---frGHs------------S 349 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKE---FRGHS------------S 349 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--chhHHH---hcCcc------------c
Confidence 999999999999888 6888999999999999999999999999988775 555433 66666 8
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
.|....| +++|.+++++++||+|++|+..+.++...+.. .+ .+-.|.++--
T Consensus 350 yvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~-------------~~--------------~d~~vnsv~~ 400 (508)
T KOG0275|consen 350 YVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKP-------------LG--------------TDYPVNSVIL 400 (508)
T ss_pred cccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccC-------------CC--------------CcccceeEEE
Confidence 8999999 45899999999999999999999987765532 00 1445666655
Q ss_pred ecCCCCEEEEEEcCCcEEEEecC
Q 001321 258 ASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
...+-.+++++-..+++.+-++.
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc
Confidence 53455678888788888877664
No 78
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.9e-18 Score=187.41 Aligned_cols=294 Identities=15% Similarity=0.219 Sum_probs=214.1
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~ 151 (1100)
...+|++|+|+.+.+.|+.+=++|.|.+|++...=++... ...+.|-+++|. .+..|++.+-+|.|.-||+-. .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~--l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT--L 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc--C
Confidence 3467999999999999999999999999999987544333 334679999999 555677778899998898764 2
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCC
Q 001321 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1100)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~ 231 (1100)
+.. |.+.... ++|++++-+| .++.+++||.||.+..++...+++...... .
T Consensus 101 k~~---~~~d~~g------------g~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l---------~--- 151 (691)
T KOG2048|consen 101 KQK---YNIDSNG------------GAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSL---------M--- 151 (691)
T ss_pred cee---EEecCCC------------cceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeec---------c---
Confidence 222 4455444 8999999988 567799999999877777777776543321 0
Q ss_pred CCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceE
Q 001321 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1100)
Q Consensus 232 ~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 311 (1100)
-..++|-++.|. |++.+|++|+.||.|++||+..+.... +
T Consensus 152 ---------------rq~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~---------~--------------- 191 (691)
T KOG2048|consen 152 ---------------RQKSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTLH---------I--------------- 191 (691)
T ss_pred ---------------cccceEEEEEec-CCccEEEecccCceEEEEEcCCCceEE---------E---------------
Confidence 006899999997 999999999999999999997652110 0
Q ss_pred EEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceE
Q 001321 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1100)
Q Consensus 312 ~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l 391 (1100)
++.+-+ .+..
T Consensus 192 -------------------~~~~~d----------~l~k----------------------------------------- 201 (691)
T KOG2048|consen 192 -------------------ITMQLD----------RLSK----------------------------------------- 201 (691)
T ss_pred -------------------eeeccc----------cccc-----------------------------------------
Confidence 000000 0000
Q ss_pred EEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCccc
Q 001321 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1100)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1100)
....++|..
T Consensus 202 -----~~~~iVWSv------------------------------------------------------------------ 210 (691)
T KOG2048|consen 202 -----REPTIVWSV------------------------------------------------------------------ 210 (691)
T ss_pred -----CCceEEEEE------------------------------------------------------------------
Confidence 000111110
Q ss_pred CcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeE
Q 001321 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1100)
Q Consensus 472 ~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~L 551 (1100)
.+-. ...|++|..-|+|.+||...+.+. ....-|.+.|.||+.+++..++
T Consensus 211 ------------------~~Lr-d~tI~sgDS~G~V~FWd~~~gTLi-----------qS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 211 ------------------LFLR-DSTIASGDSAGTVTFWDSIFGTLI-----------QSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred ------------------EEee-cCcEEEecCCceEEEEcccCcchh-----------hhhhhhhcceeEEEEcCCCCeE
Confidence 0000 117899999999999999999876 4456788899999999999999
Q ss_pred EEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 552 asg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
++++.|+.|.-|...++..+ +........|..-|.+++..++ .|.+|+.|+++.+--
T Consensus 261 fsaGvd~~ii~~~~~~~~~~---------------------wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSE---------------------WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EEccCCCceEEEEecCCccc---------------------eeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 99999999999998887432 1122334678999999999987 799999999988876
Q ss_pred cCC
Q 001321 632 MNL 634 (1100)
Q Consensus 632 ~~~ 634 (1100)
.+.
T Consensus 318 s~~ 320 (691)
T KOG2048|consen 318 SRE 320 (691)
T ss_pred ccc
Confidence 654
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.5e-20 Score=206.25 Aligned_cols=275 Identities=13% Similarity=0.204 Sum_probs=207.0
Q ss_pred EEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeece
Q 001321 80 KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1100)
Q Consensus 80 ~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~ 158 (1100)
.-+.|+..+ +++++.+..|.+|+..++.+...... ...|+++.|++++.+|++|..+|.|.|||.......-.
T Consensus 181 nlldWss~n--~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---- 254 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---- 254 (484)
T ss_pred hHhhcccCC--eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc----
Confidence 445566544 77777788999999999987666644 78999999999999999999999999999775222111
Q ss_pred eecc-cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE-E-EecCCcccccccccCCCCCCC
Q 001321 159 NISA-DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-F-VGGGKDLQLKDGVVDSPSEGD 235 (1100)
Q Consensus 159 ~i~~-~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~-~-~~~~~~~~~~~~l~~~~~g~~ 235 (1100)
+.. |. ..|-+++|. +..+.+|+.++.|..+|+...+.. . ..+|
T Consensus 255 -~~~~h~------------~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H----------------- 300 (484)
T KOG0305|consen 255 -LRGSHA------------SRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGH----------------- 300 (484)
T ss_pred -ccCCcC------------ceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcc-----------------
Confidence 333 33 889999994 455999999999999999876432 2 3334
Q ss_pred CccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEe
Q 001321 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHW 315 (1100)
Q Consensus 236 ~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w 315 (1100)
...|+.+.|. +|+.++++|+.|+.+.+||.... .+..++..
T Consensus 301 -------------~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~-----------~p~~~~~~-------------- 341 (484)
T KOG0305|consen 301 -------------RQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSP-----------EPKFTFTE-------------- 341 (484)
T ss_pred -------------cceeeeeEEC-CCCCeeccCCCccceEeccCCCc-----------cccEEEec--------------
Confidence 8899999995 99999999999999999998322 11111111
Q ss_pred cccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEe
Q 001321 316 STNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLT 395 (1100)
Q Consensus 316 ~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~ 395 (1100)
..+.|..+.+.|-
T Consensus 342 ---------------------------------------------------H~aAVKA~awcP~---------------- 354 (484)
T KOG0305|consen 342 ---------------------------------------------------HTAAVKALAWCPW---------------- 354 (484)
T ss_pred ---------------------------------------------------cceeeeEeeeCCC----------------
Confidence 0001111111111
Q ss_pred cCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCccc
Q 001321 396 SPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIK 475 (1100)
Q Consensus 396 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1100)
T Consensus 355 -------------------------------------------------------------------------------- 354 (484)
T KOG0305|consen 355 -------------------------------------------------------------------------------- 354 (484)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccccCccccCCCCcEEEEE--ecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEE
Q 001321 476 WPLSGGVPSPVPITKCHSVDRVYLAG--YHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1100)
Q Consensus 476 ~pl~GG~~~~~~~~~~s~~~~~l~Tg--~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Las 553 (1100)
...+||+| +.|+.|++||+.++.+. ..-.....|+.|.|++..+.|++
T Consensus 355 ------------------q~~lLAsGGGs~D~~i~fwn~~~g~~i------------~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 355 ------------------QSGLLATGGGSADRCIKFWNTNTGARI------------DSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred ------------------ccCceEEcCCCcccEEEEEEcCCCcEe------------cccccCCceeeEEEcCCCCEEEE
Confidence 11256665 68999999999988754 12234468999999999998887
Q ss_pred Eec--CceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 554 GNE--FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 554 g~~--dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
+.. ++.|.||++... ..+..+.+|...|..|++||||..+++|+.|.++++|+
T Consensus 405 thG~s~n~i~lw~~ps~-------------------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSM-------------------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecCCCCCcEEEEecccc-------------------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 654 688999999774 24677899999999999999999999999999999999
Q ss_pred cCCc
Q 001321 632 MNLL 635 (1100)
Q Consensus 632 ~~~~ 635 (1100)
+-+.
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8864
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.3e-19 Score=180.46 Aligned_cols=265 Identities=15% Similarity=0.221 Sum_probs=198.9
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|.++|.+++|+.++..++.|+.+++++||+++..+.... ....+|. +.|..+.|+|.. ..+++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---~~~~gh~------------~svdql~w~~~~-~d~~a 81 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---LVYRGHT------------DSVDQLCWDPKH-PDLFA 81 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---hcccCCC------------cchhhheeCCCC-CcceE
Confidence 5667899999999999999999999999999986521111 2233333 789999999974 55699
Q ss_pred EEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcE
Q 001321 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I 274 (1100)
+++.|..|++||+..+++...... .+.=.-++|. |+|.+++.+..|..|
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~------------------------------~~eni~i~ws-p~g~~~~~~~kdD~i 130 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIET------------------------------KGENINITWS-PDGEYIAVGNKDDRI 130 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeec------------------------------cCcceEEEEc-CCCCEEEEecCcccE
Confidence 999999999999999987655433 3333456674 999999999999999
Q ss_pred EEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcccc
Q 001321 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1100)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~ 354 (1100)
.+.|..+.+.... .. ..-.+..+
T Consensus 131 t~id~r~~~~~~~---------------~~-~~~e~ne~----------------------------------------- 153 (313)
T KOG1407|consen 131 TFIDARTYKIVNE---------------EQ-FKFEVNEI----------------------------------------- 153 (313)
T ss_pred EEEEecccceeeh---------------hc-ccceeeee-----------------------------------------
Confidence 9999864311000 00 00000000
Q ss_pred ccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCC
Q 001321 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1100)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 434 (1100)
T Consensus 154 -------------------------------------------------------------------------------- 153 (313)
T KOG1407|consen 154 -------------------------------------------------------------------------------- 153 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCC
Q 001321 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1100)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~ 514 (1100)
.++.++.+++.-...|+|.|-...
T Consensus 154 -------------------------------------------------------~w~~~nd~Fflt~GlG~v~ILsyp- 177 (313)
T KOG1407|consen 154 -------------------------------------------------------SWNNSNDLFFLTNGLGCVEILSYP- 177 (313)
T ss_pred -------------------------------------------------------eecCCCCEEEEecCCceEEEEecc-
Confidence 111222244444556777776554
Q ss_pred CceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcce
Q 001321 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL 594 (1100)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 594 (1100)
.|.++ .++..|.....||.|+|+|++||+|+.|..|-|||++.- .
T Consensus 178 -sLkpv---------~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------------------------i 222 (313)
T KOG1407|consen 178 -SLKPV---------QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------------------------I 222 (313)
T ss_pred -ccccc---------cccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------------------h
Confidence 33222 346789899999999999999999999999999999874 3
Q ss_pred eEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEee
Q 001321 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTE 658 (1100)
Q Consensus 595 ~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~ 658 (1100)
|...+..+.-||+.|.||.||++||+|++|..|-|=+++++..++.+++ .++-..++|.+
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~----~~~t~tVAWHP 282 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC----EGPTFTVAWHP 282 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec----cCCceeEEecC
Confidence 6778889999999999999999999999999999999999999977664 77888999973
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=4.7e-21 Score=201.95 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=212.5
Q ss_pred eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 114 ~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
-.|.+.+..+.|-++...|++|+.|..|++|+...++..+... +.+.. ++|+++.|.+ ++.++
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t---LaGs~------------g~it~~d~d~--~~~~~ 234 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST---LAGSL------------GNITSIDFDS--DNKHV 234 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh---hhccC------------CCcceeeecC--CCceE
Confidence 3678899999999999999999999999999988654333322 33322 7899999955 78889
Q ss_pred EEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 194 LIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++++.|+.+++|++.+.+.. ++.|| ...|+++-|. .....+++|+.|.
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGH------------------------------tdkVt~ak~~-~~~~~vVsgs~DR 283 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGH------------------------------TDKVTAAKFK-LSHSRVVSGSADR 283 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhccc------------------------------ccceeeehhh-ccccceeeccccc
Confidence 99999999999999998764 45667 7888888865 5555599999999
Q ss_pred cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
+|++||+.... |.. . +..+.
T Consensus 284 tiK~WDl~k~~---------------------------------C~k---t------~l~~S------------------ 303 (459)
T KOG0288|consen 284 TIKLWDLQKAY---------------------------------CSK---T------VLPGS------------------ 303 (459)
T ss_pred hhhhhhhhhhh---------------------------------eec---c------ccccc------------------
Confidence 99999986430 000 0 00000
Q ss_pred ccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccccc
Q 001321 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1100)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 432 (1100)
.+.|++
T Consensus 304 -----------------~cnDI~--------------------------------------------------------- 309 (459)
T KOG0288|consen 304 -----------------QCNDIV--------------------------------------------------------- 309 (459)
T ss_pred -----------------cccceE---------------------------------------------------------
Confidence 000000
Q ss_pred CCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeC
Q 001321 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1100)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~ 512 (1100)
. ....+++||-|+.||+||.
T Consensus 310 ----------------------------------------------------------~--~~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 310 ----------------------------------------------------------C--SISDVISGHFDKKVRFWDI 329 (459)
T ss_pred ----------------------------------------------------------e--cceeeeecccccceEEEec
Confidence 0 0125788999999999998
Q ss_pred CCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCc
Q 001321 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1100)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 592 (1100)
..+.+. .....+ +.|++|..++++..|.+.+.|.++.+.|+.+...
T Consensus 330 Rs~~~~-----------~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI---------------------- 375 (459)
T KOG0288|consen 330 RSADKT-----------RSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI---------------------- 375 (459)
T ss_pred cCCcee-----------eEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE----------------------
Confidence 888755 223333 4899999999999999999999999999988621
Q ss_pred ceeEEEEee----cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCC
Q 001321 593 SLCRAVFSL----VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 668 (1100)
Q Consensus 593 ~~~~~~~~~----h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~ 668 (1100)
...+.+ -..-.+.+.|||++.|+|+|+.||.|+||++.++++.+.... ......|++++|++-|..
T Consensus 376 ---~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~~sG~~------ 445 (459)
T KOG0288|consen 376 ---RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWNPSGSG------ 445 (459)
T ss_pred ---EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEcCCCch------
Confidence 122222 123388999999999999999999999999999998855543 223337999999976655
Q ss_pred CCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 669 PNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 669 ~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
|+++++++.+.+|.
T Consensus 446 ----------------Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 ----------------LLSADKQKAVTLWT 459 (459)
T ss_pred ----------------hhcccCCcceEecC
Confidence 89999999999983
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.8e-19 Score=183.11 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=155.2
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCc---eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 35 PATASILAFDH-IQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 35 ~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
...|++|+||| ...+++.|+.||.||+|+++.. .-.....|.+||-+++|+.||..+++++.|+.+++||+.+++.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 45799999999 5567779999999999999653 2234567999999999999999999999999999999999999
Q ss_pred eeeeecCCCeEEEEEecCCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 111 ACCLKWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~--~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.....|.++|.++.|-+... .|++|+.|.+|+.||......... ..+| +.|.++..
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t---~~LP---------------eRvYa~Dv---- 164 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVAT---LQLP---------------ERVYAADV---- 164 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeee---eecc---------------ceeeehhc----
Confidence 88889999999999998876 899999999999999875332222 2244 55655544
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
...+++++..+..|.+|+++.+........ ..+ .-.+.|++.+ +|.+..+.|
T Consensus 165 ~~pm~vVata~r~i~vynL~n~~te~k~~~--SpL-------------------------k~Q~R~va~f-~d~~~~alG 216 (347)
T KOG0647|consen 165 LYPMAVVATAERHIAVYNLENPPTEFKRIE--SPL-------------------------KWQTRCVACF-QDKDGFALG 216 (347)
T ss_pred cCceeEEEecCCcEEEEEcCCCcchhhhhc--Ccc-------------------------cceeeEEEEE-ecCCceEee
Confidence 233588899999999999987644321110 000 4456777766 788888999
Q ss_pred EcCCcEEEEecCCC
Q 001321 269 YIDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1100)
+..|.+.+-.+..+
T Consensus 217 siEGrv~iq~id~~ 230 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDP 230 (347)
T ss_pred eecceEEEEecCCC
Confidence 99999999888654
No 83
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=5.7e-20 Score=216.29 Aligned_cols=180 Identities=17% Similarity=0.238 Sum_probs=138.3
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCc-------------eEEEeCCCCCCEEEEEEEeCC
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQRLLAIAT--LDGRIKVIGGDGI-------------EGLLISPSQLPYKNLEFLQNQ 88 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs--~dG~I~vw~~~~~-------------~~~~~~~h~~~V~~l~fs~d~ 88 (1100)
+.|-.+.|.+.. |-.++.+|++..+|+|+ .||.++||+.+.+ .+.....|.++|.|++|++||
T Consensus 4 ~kp~wv~H~~~~--IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 4 LKPTWVNHNEKS--IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG 81 (942)
T ss_pred ecccccccCCee--EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC
Confidence 344455665443 88999999999999999 8999999987443 223556799999999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCc--EEEEEEecCCCeeeeeceeecccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGL--MSVIKYDADEGKLFQLPYNISADALS 166 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~--V~Iw~~d~~~~~l~~~~~~i~~~~~~ 166 (1100)
.||++++.|..|.||..... .... +.|+..|. +.=|+.- +.+.+|.
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~-~~~~-------------------~fgs~g~~~~vE~wk~~----------~~l~~H~-- 129 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEI-GSGT-------------------VFGSTGGAKNVESWKVV----------SILRGHD-- 129 (942)
T ss_pred CeEeeccCcceEEEeeeccc-CCcc-------------------cccccccccccceeeEE----------EEEecCC--
Confidence 99999999999999997651 1111 12222221 2223321 3356666
Q ss_pred cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCC
Q 001321 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1100)
Q Consensus 167 ~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~ 245 (1100)
..|..+.|+| ++.++++++-|++|.|||..+.+.+. ..+|
T Consensus 130 ----------~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H--------------------------- 170 (942)
T KOG0973|consen 130 ----------SDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH--------------------------- 170 (942)
T ss_pred ----------CccceeccCC--CccEEEEecccceEEEEccccceeeeeeecc---------------------------
Confidence 8999999999 68889999999999999999986654 5566
Q ss_pred CCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 246 ~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
...|-.+.|. |-|+++++-++|++|++|+..
T Consensus 171 ---~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 171 ---QSLVKGVSWD-PIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred ---cccccceEEC-CccCeeeeecCCceEEEEEcc
Confidence 7788899997 999999999999999999864
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=2.6e-19 Score=209.62 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=161.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEE-eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~-~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l 111 (1100)
+...+.|..|. ...+++|+.|+.|++|+... ..+.. ..+|.+.|..++|...+.+|++++.|.+++|||+.+++..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 67788999998 77899999999999999954 44445 7899999999999987789999999999999999999999
Q ss_pred eee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 112 ~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
+++ .|.+.|.|+... ..+++.|+.|.+|+||+++. +..... +.+|. ++|.+|.. ++
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n--~~~l~l---~~~h~------------~~V~~v~~----~~ 341 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTN--GACLNL---LRGHT------------GPVNCVQL----DE 341 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccC--cceEEE---ecccc------------ccEEEEEe----cC
Confidence 998 588888887764 55677889999999999984 444432 44465 89999999 46
Q ss_pred CEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 191 NRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
.++++|+.||+|++||+.+++++. +.+| ..+|.++.+. .. .++++|+
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH------------------------------~~~V~sl~~~-~~-~~~~Sgs 389 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGH------------------------------TGRVYSLIVD-SE-NRLLSGS 389 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCC------------------------------cceEEEEEec-Cc-ceEEeee
Confidence 779999999999999999988765 5566 8899999743 33 8999999
Q ss_pred cCCcEEEEecCCC
Q 001321 270 IDGDILLWNTSTT 282 (1100)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1100)
.|++|++||+.+.
T Consensus 390 ~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 390 LDTTIKVWDLRTK 402 (537)
T ss_pred eccceEeecCCch
Confidence 9999999999754
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.2e-19 Score=194.29 Aligned_cols=203 Identities=15% Similarity=0.234 Sum_probs=164.8
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceE--EEe----------------CCCCCCEEEEEEEeCC
Q 001321 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEG--LLI----------------SPSQLPYKNLEFLQNQ 88 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~--~~~----------------~~h~~~V~~l~fs~d~ 88 (1100)
...+-.|.-.++|++++|+.++..+++.||.|.=|+.-. ... +.. ..|..-|.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 455667889999999999999999999999999998622 211 111 1566679999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
.||++++.|+.|.|||.++.+.+..+ .|.+.|.+++|-.....||+++.|.+|++|+++.. .... ++-+|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--s~ve---tlyGHq--- 286 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--SYVE---TLYGHQ--- 286 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--HHHH---HHhCCc---
Confidence 99999999999999999999988885 78899999999999999999999999999998842 1111 244554
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEE-EcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~-~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~ 246 (1100)
+.|.+|.- .+.+. +++. ..|+++++|.+.+.....+.++
T Consensus 287 ---------d~v~~Ida--L~reR-~vtVGgrDrT~rlwKi~eesqlifrg~---------------------------- 326 (479)
T KOG0299|consen 287 ---------DGVLGIDA--LSRER-CVTVGGRDRTVRLWKIPEESQLIFRGG---------------------------- 326 (479)
T ss_pred ---------cceeeech--hcccc-eEEeccccceeEEEeccccceeeeeCC----------------------------
Confidence 78888876 33455 5555 4999999999977666666666
Q ss_pred CCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 247 ~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+.+.|+||. +..++++|++||+|.+|++...
T Consensus 327 --~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 327 --EGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred --CCCeeeEEEe--cccceeeccCCceEEEeeeccc
Confidence 7789999976 6788999999999999998643
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=8.4e-20 Score=185.26 Aligned_cols=169 Identities=17% Similarity=0.350 Sum_probs=134.4
Q ss_pred eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC------------C------cee-eeeecCCCeEEEEEecC
Q 001321 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES------------R------SLA-CCLKWESNITAFSVISG 128 (1100)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s------------~------~~l-~~~~~~~~Vt~~~~s~~ 128 (1100)
|...+..|++++.+-+|++||.++++++.|-.|++.|++. + -++ +.+.|...|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 5567788999999999999999999999999999999861 0 122 33477889999999999
Q ss_pred CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 129 SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 129 ~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
...|++|+.|++|+++|+.... .+..+++-.+. .+|.+|.||| .|.+|++|...-++++||+.
T Consensus 184 e~ILiS~srD~tvKlFDfsK~s---aKrA~K~~qd~------------~~vrsiSfHP--sGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTS---AKRAFKVFQDT------------EPVRSISFHP--SGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred hheEEeccCCCeEEEEecccHH---HHHHHHHhhcc------------ceeeeEeecC--CCceEEEecCCCceeEEecc
Confidence 9999999999999999987411 11112222222 7899999999 58889999999999999999
Q ss_pred CCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 209 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+-++...-. ++..+.+.|+++-+. +.|+..++|+.||.|++||--
T Consensus 247 T~Qcfvsan--------------------------Pd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 247 TYQCFVSAN--------------------------PDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred ceeEeeecC--------------------------cccccccceeEEEec-CCccEEEEeccCCcEEeeccc
Confidence 876532211 112238899999985 999999999999999999864
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=195.03 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=163.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
..+.|+.++|+|...+=.+-+..-++.||+....++. .+...+..|.++.|..||..|++|+..|.|+|+|+.++..+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 3568999999997765444444678999999776665 366677889999999999999999999999999988877777
Q ss_pred ee-ecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 113 CL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 113 ~~-~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.+ .|..+|..+.|+|+.+ .+++|++|+.+++|+++... . + +.+.+|. +.|.|.+|+|.. +
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v-~--~~l~~ht------------DYVR~g~~~~~~-~ 166 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--V-Q--AELSGHT------------DYVRCGDISPAN-D 166 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--E-E--EEecCCc------------ceeEeeccccCC-C
Confidence 66 8889999999999876 56678888999999988632 3 2 5688887 999999999974 4
Q ss_pred CEEEEEEcCCEEEEEEccCC-EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 191 NRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
..+++|+.||.|++||.+.. ..+..+.| ..+|.++++. |.|..|++++
T Consensus 167 hivvtGsYDg~vrl~DtR~~~~~v~elnh------------------------------g~pVe~vl~l-psgs~iasAg 215 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLTSRVVELNH------------------------------GCPVESVLAL-PSGSLIASAG 215 (487)
T ss_pred eEEEecCCCceEEEEEeccCCceeEEecC------------------------------CCceeeEEEc-CCCCEEEEcC
Confidence 46999999999999999887 55556666 7789999987 9999888876
Q ss_pred cCCcEEEEecCCC
Q 001321 270 IDGDILLWNTSTT 282 (1100)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1100)
. +.+++||+.+|
T Consensus 216 G-n~vkVWDl~~G 227 (487)
T KOG0310|consen 216 G-NSVKVWDLTTG 227 (487)
T ss_pred C-CeEEEEEecCC
Confidence 4 67999998755
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.6e-19 Score=179.63 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=161.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
...|+.+.|+|..+.|++++.||.+++|+....+......|+.|+.+.+|.++ ...++++.||.|+.+|+.++......
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec
Confidence 45799999999999999999999999999998899999999999999999997 78999999999999999999998888
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|...|.|+...+....+++|+.|++|++||......... +. ....|.++.. .|++|+
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~-----~d-------------~~kkVy~~~v----~g~~Lv 149 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT-----FD-------------QGKKVYCMDV----SGNRLV 149 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc-----cc-------------cCceEEEEec----cCCEEE
Confidence 9999999999999999999999999999999764111111 11 0146888877 577899
Q ss_pred EEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc
Q 001321 195 IAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~ 273 (1100)
+|..+..|.+||++...... ...- .+ .-.+.|++.+ |++.-.++++-||.
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~reS-------~l---------------------kyqtR~v~~~-pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRES-------SL---------------------KYQTRCVALV-PNGEGYVVSSIEGR 200 (323)
T ss_pred EeecCceEEEEEcccccchhhhccc-------cc---------------------eeEEEEEEEe-cCCCceEEEeecce
Confidence 99999999999998865422 1110 00 4467889987 88888999999999
Q ss_pred EEEEecC
Q 001321 274 ILLWNTS 280 (1100)
Q Consensus 274 I~lWd~~ 280 (1100)
+.+=.++
T Consensus 201 VavE~~d 207 (323)
T KOG1036|consen 201 VAVEYFD 207 (323)
T ss_pred EEEEccC
Confidence 9875544
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=5.5e-20 Score=211.41 Aligned_cols=296 Identities=14% Similarity=0.147 Sum_probs=196.0
Q ss_pred CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-e----------cCCCeEEEEEec-----CCCEEEEEeC
Q 001321 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K----------WESNITAFSVIS-----GSHFMYIGDE 137 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~----------~~~~Vt~~~~s~-----~~~~l~~G~~ 137 (1100)
.|++.|.++.|++||+|||+++.|+.|+||.+..-...... . ..+.+..+..++ .....-.+.+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 79999999999999999999999999999998764331111 0 001111111111 0001111111
Q ss_pred CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec
Q 001321 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1100)
Q Consensus 138 dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~ 217 (1100)
...+.+ ... --.+...| +-.-.+|.+.|..|.|+- ..+||+++.|.+|+||++....++..|.
T Consensus 345 s~~~~~-p~~--~f~f~ekP-----------~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 345 SPCVLL-PLK--AFVFSEKP-----------FCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred CccccC-CCc--cccccccc-----------hhhhhccchhheeccccc---CCeeEeccccccEEeecCCCcceeeEEe
Confidence 111100 000 00000001 111134458999999944 4469999999999999999999999999
Q ss_pred CCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcce
Q 001321 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVV 297 (1100)
Q Consensus 218 ~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~ 297 (1100)
| ...|||+.|+.-|.+++++|+-||.||+|++... .
T Consensus 408 H------------------------------ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~-------------~- 443 (712)
T KOG0283|consen 408 H------------------------------NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK-------------K- 443 (712)
T ss_pred c------------------------------CCeeEEEEecccCCCcEeecccccceEEeecCcC-------------e-
Confidence 9 8899999998667889999999999999998532 0
Q ss_pred eeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEc
Q 001321 298 KLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILL 377 (1100)
Q Consensus 298 ~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~ 377 (1100)
.+.|.-..
T Consensus 444 --------------Vv~W~Dl~---------------------------------------------------------- 451 (712)
T KOG0283|consen 444 --------------VVDWNDLR---------------------------------------------------------- 451 (712)
T ss_pred --------------eEeehhhh----------------------------------------------------------
Confidence 01111000
Q ss_pred cCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhH
Q 001321 378 SSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSE 457 (1100)
Q Consensus 378 p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~ 457 (1100)
T Consensus 452 -------------------------------------------------------------------------------- 451 (712)
T KOG0283|consen 452 -------------------------------------------------------------------------------- 451 (712)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCC
Q 001321 458 IATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRA 537 (1100)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~ 537 (1100)
..+.+++++|||+..+.|+-+|.+|+|+...-.++.-..+.... .....|.
T Consensus 452 --------------------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~--~Kk~~~~- 502 (712)
T KOG0283|consen 452 --------------------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN--KKKKQGK- 502 (712)
T ss_pred --------------------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc--CccccCc-
Confidence 01123368899999999999999999999887766333222111 1122344
Q ss_pred CeeEEEEeeCCC-eEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecC--cCeEEEEEcCC
Q 001321 538 PVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--SPVRALQFTSS 614 (1100)
Q Consensus 538 ~Vt~lafspd~~-~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~--~~VtsLafSp~ 614 (1100)
.||.+.|.|... .+.+.+.|..|||||..+.. ++..|.++. ..=+.-.|+.|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-------------------------lv~KfKG~~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-------------------------LVHKFKGFRNTSSQISASFSSD 557 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCCceEEEeccchh-------------------------hhhhhcccccCCcceeeeEccC
Confidence 899999998543 57788999999999996541 233344331 12245679999
Q ss_pred CCEEEEEeCCceEEEEecCCce
Q 001321 615 GAKLAVGFECGRVAVLDMNLLS 636 (1100)
Q Consensus 615 g~~LavGs~dG~V~vwD~~~~~ 636 (1100)
|++|++|++|..|+||+.....
T Consensus 558 gk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999986544
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.8e-19 Score=181.74 Aligned_cols=206 Identities=17% Similarity=0.194 Sum_probs=168.6
Q ss_pred cccccceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCceEEEeCCCCCCEEEEEEEeCCC--EEEEEEC
Q 001321 21 AADLNLRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQG--FLISITN 96 (1100)
Q Consensus 21 ~~~~~~~~~~~~-G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~~~~~~~h~~~V~~l~fs~d~~--~Lls~s~ 96 (1100)
+..+.+...++| .|.+.++|+|.+ +.++|+|+.|-+|+|||. ...+.-.+..|.+.|+++.|.++-. .|++++.
T Consensus 28 s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 334444445554 688899999997 899999999999999999 5667778899999999999999864 8999999
Q ss_pred CCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 97 DNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 97 d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
||.|.+|+.....++.++ .|.+.|+.++++|.+++.++.+.|+.++.|++-..++.... ++.
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~---~L~-------------- 168 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL---NLK-------------- 168 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee---ccC--------------
Confidence 999999999999999888 78889999999999999999999999999998754443331 122
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
..-+.|.|.| .|.+++++..++. -+|.+.+..+...... +.++.|+
T Consensus 169 -~~at~v~w~~--~Gd~F~v~~~~~i-~i~q~d~A~v~~~i~~------------------------------~~r~l~~ 214 (362)
T KOG0294|consen 169 -NKATLVSWSP--QGDHFVVSGRNKI-DIYQLDNASVFREIEN------------------------------PKRILCA 214 (362)
T ss_pred -CcceeeEEcC--CCCEEEEEeccEE-EEEecccHhHhhhhhc------------------------------cccceee
Confidence 2234589977 6888888888886 7999888776544332 5678888
Q ss_pred EEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 256 CWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.|. ++..+++|.+|+.|.+||..+
T Consensus 215 ~~l--~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 215 TFL--DGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eec--CCceEEEecCCceEEEeccCC
Confidence 864 788999999999999999864
No 91
>PTZ00421 coronin; Provisional
Probab=99.84 E-value=8e-19 Score=205.57 Aligned_cols=206 Identities=15% Similarity=0.153 Sum_probs=157.6
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCc--------eEEEeCCCCCCEEEEEEEeCC-CEEEEEECCCcE
Q 001321 31 HYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEI 100 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~--------~~~~~~~h~~~V~~l~fs~d~-~~Lls~s~d~~I 100 (1100)
..||.+.|.+++|+| ++++||+|+.||.|+||+.... ....+.+|..+|.+++|+|++ .+|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 458999999999999 8899999999999999998532 234567899999999999975 689999999999
Q ss_pred EEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 101 QVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
+|||+.+++.+..+ .|...|++++|+|++.++++|+.||.|+|||+.. +... ..+.+|.- ..+
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v---~tl~~H~~-----------~~~ 214 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIV---SSVEAHAS-----------AKS 214 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEE---EEEecCCC-----------Ccc
Confidence 99999999887777 5778999999999999999999999999999875 3333 23554430 234
Q ss_pred EEEEeccCCCCCEEEEEE----cCCEEEEEEccCCE-EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 180 VGVLPHPNSSGNRVLIAY----ENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~----~dg~V~lwdl~~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
..+.|.|. +..+++++ .|+.|++||+.... ....... . ....+..
T Consensus 215 ~~~~w~~~--~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~---------d-------------------~~~~~~~ 264 (493)
T PTZ00421 215 QRCLWAKR--KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL---------D-------------------QSSALFI 264 (493)
T ss_pred eEEEEcCC--CCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc---------C-------------------CCCceEE
Confidence 56778773 44455443 47899999998643 2222111 0 0223333
Q ss_pred EEEecCCCCEEEEEE-cCCcEEEEecCCCC
Q 001321 255 LCWASSSGSILAVGY-IDGDILLWNTSTTA 283 (1100)
Q Consensus 255 l~w~spdg~~l~sg~-~DG~I~lWd~~~~~ 283 (1100)
..| ++++..|++++ .||.|++||+.++.
T Consensus 265 ~~~-d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 265 PFF-DEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEE-cCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 444 59999999887 49999999998763
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=196.30 Aligned_cols=197 Identities=15% Similarity=0.139 Sum_probs=159.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce--EE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~--~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
-|.+.+..+.|-++...||+|+.|-.|++|+..+.. .. .+.+..++|+.+.|.+++.++++.+.|+.+++||+...+
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 356789999999999999999999999999985543 22 456777899999999999999999999999999999999
Q ss_pred eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
+.+++ .|..+|+++.|......+++|+.|.+|+.|++......-. .+++ ..+..|...+
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt----~l~~--------------S~cnDI~~~~-- 312 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT----VLPG--------------SQCNDIVCSI-- 312 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc----cccc--------------ccccceEecc--
Confidence 98888 8899999999998888899999999999999875221111 1222 2233333322
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
..+++|-.|+.|++||..+..+...... .+.|+++.- +++|..|++.
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~~------------------------------gg~vtSl~l-s~~g~~lLss 359 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSADKTRSVPL------------------------------GGRVTSLDL-SMDGLELLSS 359 (459)
T ss_pred --eeeeecccccceEEEeccCCceeeEeec------------------------------CcceeeEee-ccCCeEEeee
Confidence 2388888999999999999877655422 568999995 5999999999
Q ss_pred EcCCcEEEEecCCC
Q 001321 269 YIDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1100)
+.|.++.+.|..+.
T Consensus 360 sRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 360 SRDDTLKVIDLRTK 373 (459)
T ss_pred cCCCceeeeecccc
Confidence 99999999998643
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.5e-18 Score=173.05 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=163.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC--CCcEEEEEcCCCce
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSL 110 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~--d~~I~vWd~~s~~~ 110 (1100)
..+.|+++.|+++|.+|++++.|..|+|||. ++.++.....++..|..++|......++.++. |.+|+..++.+.++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4779999999999999999999999999998 66677777788889999999988888888887 89999999999999
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+.-+ .|...|+.++++|.++.+++++.|.+|++||+......-. +.. ..-..++|.| .
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l~~--------------~~~pi~AfDp--~ 151 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----LNL--------------SGRPIAAFDP--E 151 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----Eec--------------CCCcceeECC--C
Confidence 9888 8889999999999999999999999999999986443322 111 2233467866 7
Q ss_pred CCEEEEEEcCCEEEEEEccCCE--EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
|-.++++.....|++||++.-. +...+.. ......+++.+-| +|||+.|+.
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--------------------------~~~~~~ew~~l~F-S~dGK~iLl 204 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSI--------------------------TDNDEAEWTDLEF-SPDGKSILL 204 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEcc--------------------------CCCCccceeeeEE-cCCCCEEEE
Confidence 8878888888899999997642 2222211 1112667888887 599999999
Q ss_pred EEcCCcEEEEecCCC
Q 001321 268 GYIDGDILLWNTSTT 282 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1100)
+...+.+.+.|.-+|
T Consensus 205 sT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 205 STNASFIYLLDAFDG 219 (311)
T ss_pred EeCCCcEEEEEccCC
Confidence 999999999987655
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.83 E-value=2.7e-19 Score=210.68 Aligned_cols=320 Identities=16% Similarity=0.213 Sum_probs=211.2
Q ss_pred CCCeEEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 117 ESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 117 ~~~Vt~~~~s~~~~~l~~G~--~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
+..|.+++++|++..+++|+ .||.+.||+.+.--.+... ....+.+....-..|.+.|.|+.|+| +|.+|+
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~-----~~~~l~k~l~~m~~h~~sv~CVR~S~--dG~~lA 85 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE-----KNENLPKHLCTMDDHDGSVNCVRFSP--DGSYLA 85 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhh-----hhcccchhheeeccccCceeEEEECC--CCCeEe
Confidence 34699999999999999999 7999999998752111110 00001122222234559999999977 899999
Q ss_pred EEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcE
Q 001321 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I 274 (1100)
+|+.|+.|.||.....-.-..++-++.. ..-......+.-..++..|..++|. |++.++++++.|++|
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~-----------~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGA-----------KNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSV 153 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccc-----------cccceeeEEEEEecCCCccceeccC-CCccEEEEecccceE
Confidence 9999999999998741111111100000 0000000011111238899999996 999999999999999
Q ss_pred EEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcccc
Q 001321 275 LLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGM 354 (1100)
Q Consensus 275 ~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~ 354 (1100)
.+||..+.+.. ++++
T Consensus 154 iiwn~~tF~~~----------------------------------------------------------~vl~------- 168 (942)
T KOG0973|consen 154 IIWNAKTFELL----------------------------------------------------------KVLR------- 168 (942)
T ss_pred EEEccccceee----------------------------------------------------------eeee-------
Confidence 99997533100 0110
Q ss_pred ccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCC
Q 001321 355 ENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISD 434 (1100)
Q Consensus 355 ~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 434 (1100)
|+ .
T Consensus 169 -------------------------------------------~H----------------------------------~ 171 (942)
T KOG0973|consen 169 -------------------------------------------GH----------------------------------Q 171 (942)
T ss_pred -------------------------------------------cc----------------------------------c
Confidence 00 0
Q ss_pred CceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCC
Q 001321 435 PIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATY 514 (1100)
Q Consensus 435 ~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~ 514 (1100)
+ ...| +.+.|-|++++|-+.|++|+||+...
T Consensus 172 s-----------------------------------------~VKG--------vs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 172 S-----------------------------------------LVKG--------VSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred c-----------------------------------------cccc--------eEECCccCeeeeecCCceEEEEEccc
Confidence 0 0011 14668888999999999999999766
Q ss_pred CceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecC----ceEEEEEecCCCCCcceeeeccCCCceeeccCC
Q 001321 515 PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF----GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1100)
Q Consensus 515 ~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~d----G~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~ 590 (1100)
-.+... ......+. .-..-+..++|||||.+|++...- -.+.|.+ .
T Consensus 203 w~i~k~--It~pf~~~---~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie-------------------------R 252 (942)
T KOG0973|consen 203 WGIEKS--ITKPFEES---PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE-------------------------R 252 (942)
T ss_pred ceeeEe--eccchhhC---CCcceeeecccCCCcCeecchhhccCCcceeEEEe-------------------------c
Confidence 433311 11111111 122458899999999999987652 1222222 2
Q ss_pred CcceeEEEEeecCcCeEEEEEcCC-----CC------------EEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEE
Q 001321 591 KISLCRAVFSLVNSPVRALQFTSS-----GA------------KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIIS 653 (1100)
Q Consensus 591 ~~~~~~~~~~~h~~~VtsLafSp~-----g~------------~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~s 653 (1100)
.++..-..|.+|.+++++++|+|. -+ .+|+|+.|++|.||....++.++-.+-+ ....|..
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~D 330 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVD 330 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceee
Confidence 334455678899999999999982 11 6899999999999999988888655443 4678999
Q ss_pred EEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 654 l~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
++|+++|-. |++++.||+|.++.-+
T Consensus 331 msWspdG~~----------------------LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 331 MSWSPDGFS----------------------LFACSLDGTVALIHFE 355 (942)
T ss_pred eeEcCCCCe----------------------EEEEecCCeEEEEEcc
Confidence 999977655 9999999999999833
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=185.07 Aligned_cols=284 Identities=17% Similarity=0.216 Sum_probs=221.2
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~ 156 (1100)
.++.+...+....+++++.|.++.++|..+++++..+ .|...|+.+.++++...+++++.|-.|+||..........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-- 298 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-- 298 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--
Confidence 6888888887678999999999999999999999888 7778999999999999999999999999999775332222
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCC
Q 001321 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1100)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 236 (1100)
+..|. .+|+.+..|| .|.+|++++.||+..+.|++++..+....+ +-.
T Consensus 299 ---~~~h~------------~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-------~~s-------- 346 (506)
T KOG0289|consen 299 ---SRPHE------------EPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSD-------ETS-------- 346 (506)
T ss_pred ---ccccc------------ccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEee-------ccc--------
Confidence 33344 8999999999 588899999999999999999988766544 100
Q ss_pred ccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEec
Q 001321 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1100)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~ 316 (1100)
.-.++++.|+ |||..+.+|..||.|++||+.++. .+.+
T Consensus 347 ------------~v~~ts~~fH-pDgLifgtgt~d~~vkiwdlks~~-----------~~a~------------------ 384 (506)
T KOG0289|consen 347 ------------DVEYTSAAFH-PDGLIFGTGTPDGVVKIWDLKSQT-----------NVAK------------------ 384 (506)
T ss_pred ------------cceeEEeeEc-CCceEEeccCCCceEEEEEcCCcc-----------cccc------------------
Confidence 4458999986 999999999999999999987541 0000
Q ss_pred ccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEec
Q 001321 317 TNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS 396 (1100)
Q Consensus 317 ~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~ 396 (1100)
+
T Consensus 385 ------F------------------------------------------------------------------------- 385 (506)
T KOG0289|consen 385 ------F------------------------------------------------------------------------- 385 (506)
T ss_pred ------C-------------------------------------------------------------------------
Confidence 0
Q ss_pred CCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccc
Q 001321 397 PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW 476 (1100)
Q Consensus 397 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1100)
T Consensus 386 -------------------------------------------------------------------------------- 385 (506)
T KOG0289|consen 386 -------------------------------------------------------------------------------- 385 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEec
Q 001321 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE 556 (1100)
Q Consensus 477 pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~ 556 (1100)
+||.+++..+.|+.+|.+++|+.+|+.|++||+..-..... +.+. ...+|.+++|++.|.+|+.++.
T Consensus 386 ---pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt---------~~l~-~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 386 ---PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT---------IQLD-EKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred ---CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce---------eecc-ccccceeEEEcCCCCeEEeecc
Confidence 11222233346778888999999999999999986542211 1122 2237999999999999999966
Q ss_pred CceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEec
Q 001321 557 FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 557 dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
| |+||.+... ...+.++..+..|.+..+.+.|....+++++|+.|..++++-+
T Consensus 453 ~--l~Vy~~~k~---------------------~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 453 D--LQVYICKKK---------------------TKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred e--eEEEEEecc---------------------cccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 5 555555433 1224456777889999999999999999999999999888754
No 96
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-17 Score=192.12 Aligned_cols=546 Identities=17% Similarity=0.202 Sum_probs=321.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCC---CEEEEEECCCcEEEEEcC
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQ---GFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~---~~Lls~s~d~~I~vWd~~ 106 (1100)
.-|.+.--..-.|++|++.|...+ +..|.||.....+ +..+.+|..+++.+.+.|.. .++++++.+|+|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 445555556678999999999877 6899999985554 44677899999999998854 478899999999999999
Q ss_pred CCceeeeeecCCCeEEEEEecC----CCEEEEEeCCCcEEEEEEecCCCeeeeec--eeecccccccccCCCCCCCCCeE
Q 001321 107 SRSLACCLKWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLP--YNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 107 s~~~l~~~~~~~~Vt~~~~s~~----~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.+.++.++.-..++.++.+.|. ...++++.++-.+ ...-. ..+.... +.+.... .....+-..+ ....
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~--~~~~s--~~~~~q~~~~~~~t~~-~~~~d~~~~~-~~~~ 164 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI--LTTFS--KKLSKQSSRFVLATFD-SAKGDFLKEH-QEPK 164 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeeccccee--eeecc--cccccceeeeEeeecc-ccchhhhhhh-cCCc
Confidence 9999999988877777777532 1233344444322 11000 0010000 1111000 0000000111 1246
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
+|.+++ .|. +.....+..+.+|++.... .....+ +... .+...+++..+ +|
T Consensus 165 ~I~~~~--~ge-~~~i~~~~~~~~~~v~~~~-~~~~~~-~~~~-----------------------~Htf~~t~~~~-sp 215 (792)
T KOG1963|consen 165 SIVDNN--SGE-FKGIVHMCKIHIYFVPKHT-KHTSSR-DITV-----------------------HHTFNITCVAL-SP 215 (792)
T ss_pred cEEEcC--Cce-EEEEEEeeeEEEEEecccc-eeeccc-hhhh-----------------------hhcccceeEEe-cc
Confidence 677766 466 5555555566899988865 222222 1111 11445788886 59
Q ss_pred CCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecc--cccCCCCCCceEEEEeCCCCC
Q 001321 261 SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWST--NKESRSNIDGRLFVYGGDEIG 338 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~--~~~~~~~~~~~llv~gg~~~g 338 (1100)
+++++++|..||.|.+|.--.. .........+||+. ..+++++.+|.++.+||.+.
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~---------------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~- 273 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGS---------------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG- 273 (792)
T ss_pred ccceEEEeccCCcEEEEecccc---------------------ccccccceEEEecccccceeEEecCCceEeecccce-
Confidence 9999999999999999974321 12344567789984 45567899999999999997
Q ss_pred CcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCC
Q 001321 339 SEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKK 418 (1100)
Q Consensus 339 ~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~ 418 (1100)
++.+|....-. +++.-...+++..+..+|++. ...+.+++.++++.....+.......+-.
T Consensus 274 ------VLv~Wq~~T~~-----kqfLPRLgs~I~~i~vS~ds~--------~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 274 ------VLVLWQLETGK-----KQFLPRLGSPILHIVVSPDSD--------LYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ------EEEEEeecCCC-----cccccccCCeeEEEEEcCCCC--------eEEEEecCceEEEEeccchhhhhhccCcc
Confidence 77777543211 123334667899999998753 67777889999998766655544433311
Q ss_pred CCCC-CccCCccc----ccCCCceEEEEEEeccCCCCchhhHhHHHhhc-cccCCCcccCcccccccC--CcccccCccc
Q 001321 419 PSVC-PVEFPGVI----PISDPIMTVAEFMLLPFGGHSSKGLSEIATFT-KLHSSHTQAGHIKWPLSG--GVPSPVPITK 490 (1100)
Q Consensus 419 ~~~~-~~~~p~~~----~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pl~G--G~~~~~~~~~ 490 (1100)
+..+ ....+..+ .... ......+..-+.. . .|+.+.... -++- +..... ...| -+...+..++
T Consensus 335 ~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~---v-Q~ydl~td~~i~~~---~v~~~n-~~~~~~n~~v~itav~ 405 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH---V-QFYDLYTDSTIYKL---QVCDEN-YSDGDVNIQVGITAVA 405 (792)
T ss_pred CCCccccccccccceeEEEcC-CCCceeecCCCce---E-EEEeccccceeeeE---EEEeec-ccCCcceeEEeeeeeh
Confidence 1111 11111111 1111 0111111100000 0 111111100 0000 000000 0111 1112223335
Q ss_pred cCCCCcEEEEE--------ecCCc--EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeC-CC-eEEEEecCc
Q 001321 491 CHSVDRVYLAG--------YHDGS--VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NS-SLAVGNEFG 558 (1100)
Q Consensus 491 ~s~~~~~l~Tg--------~~DGt--IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd-~~-~Lasg~~dG 558 (1100)
.+-.+++++|+ ..||. +++|-.....-. +.|++.+. -.|...+.+.+|++. .. .+++++.||
T Consensus 406 ~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt--~~L~T~I~----~PH~~~~vat~~~~~~rs~~~vta~~dg 479 (792)
T KOG1963|consen 406 RSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT--FILNTKIN----NPHGNAFVATIFLNPTRSVRCVTASVDG 479 (792)
T ss_pred hhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce--eEEEEEEe----cCCCceeEEEEEecCcccceeEEeccCC
Confidence 55668888887 34443 788977655422 44443332 356666666666653 33 799999999
Q ss_pred eEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEE
Q 001321 559 LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 559 ~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~ 638 (1100)
.++||-+.+..+ ..+...++.|...-..|+.++++++||.||.+||+|.+ ++|.+||..++..+
T Consensus 480 ~~KiW~~~~~~n---------------~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~-~~Itiwd~~~~~~l 543 (792)
T KOG1963|consen 480 DFKIWVFTDDSN---------------IYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFD-DTITIWDYDTKNEL 543 (792)
T ss_pred eEEEEEEecccc---------------cCcCccceEEeeeeccccCcccchhhcCCCcEEEEecC-CEEEEecCCChhhh
Confidence 999999976532 12224556676666679999999999999998888875 57999999986443
Q ss_pred EEeecCCC-CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccC
Q 001321 639 FFTDDISG-SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1100)
Q Consensus 639 ~~~~~~~~-~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~ 707 (1100)
. ...+ ...++..+.|..... ....++.....++.+|+..++.++..
T Consensus 544 ~---~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 544 L---CTEGSRNWPIAELLFTAQTQ--------------------NDGALVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred h---ccccccccchHhHhhhcccc--------------------cccceeeccCceEehHhhhhhheecc
Confidence 1 1112 233444555542111 12256667789999999776666653
No 97
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=6.9e-18 Score=185.48 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=130.4
Q ss_pred cCCCCcEEEE--EecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee-CCCeEEEEecCceEEEEEecC
Q 001321 491 CHSVDRVYLA--GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 491 ~s~~~~~l~T--g~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp-d~~~Lasg~~dG~V~lw~l~~ 567 (1100)
|+-+...++. ++.-|.|-||++..+.-.+--++. - --....|+.+.|+| |...||++++||.|+||.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p-----~--l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP-----G--LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccc-----c--cccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 3334444432 466789999999866422111111 0 11235799999999 677899999999999999987
Q ss_pred CCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCC-CCEEEEEeCCceEEEEecCCceEEEEeecCCC
Q 001321 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS-GAKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1100)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~-g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~ 646 (1100)
+..... ...+-..+..|...|++|.|+|- ...||+++.|-+|.+||+.+.+.- ..+.+
T Consensus 660 ~gl~e~------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~---~~l~g 718 (1012)
T KOG1445|consen 660 NGLPEN------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY---SRLVG 718 (1012)
T ss_pred CCCCcc------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh---heecc
Confidence 642211 01134567899999999999994 468999999999999999988765 34568
Q ss_pred CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCc-cccCCccccCCCceeEEEEEec
Q 001321 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN-MISSSPWHLKKKVIAISMEVIE 725 (1100)
Q Consensus 647 ~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~-~l~~~~i~~~~~~~~l~~~~~~ 725 (1100)
|.+.|.+++|+++|.. +++.++||.|+||...+++ .+..+.---...+ +--+|..|
T Consensus 719 HtdqIf~~AWSpdGr~----------------------~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRg-ARi~wacd 775 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRR----------------------IATVCKDGTLRVYEPRSREQPVYEGKGPVGTRG-ARILWACD 775 (1012)
T ss_pred CcCceeEEEECCCCcc----------------------eeeeecCceEEEeCCCCCCCccccCCCCccCcc-eeEEEEec
Confidence 9999999999988866 9999999999999977655 3333321111222 33456666
Q ss_pred cc
Q 001321 726 PV 727 (1100)
Q Consensus 726 ~~ 727 (1100)
+.
T Consensus 776 gr 777 (1012)
T KOG1445|consen 776 GR 777 (1012)
T ss_pred Cc
Confidence 54
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.8e-18 Score=174.51 Aligned_cols=180 Identities=17% Similarity=0.257 Sum_probs=138.7
Q ss_pred EEEEEECCCeEEEEeCCCce-------------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-
Q 001321 49 LLAIATLDGRIKVIGGDGIE-------------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL- 114 (1100)
Q Consensus 49 lLA~gs~dG~I~vw~~~~~~-------------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~- 114 (1100)
.+++|+....|.=|.++-.. ......|.++|++|+.+ +.|++|+++|.+|+|||+.+++.+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 36778877777766652211 22345799999999875 689999999999999999998777655
Q ss_pred ecCCCeEEEEEecCCC--EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 115 KWESNITAFSVISGSH--FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~--~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
.|.+.|+|+.|.+... +|++|.+||.|.||+.+. -.+. -.+.+|. +.|+.|+.|| .+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~---~slK~H~------------~~Vt~lsiHP--S~KL 141 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELL---KSLKAHK------------GQVTDLSIHP--SGKL 141 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEe---eeecccc------------cccceeEecC--CCce
Confidence 8889999999998875 999999999999999774 1222 3355555 7799999999 4887
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
-++.+.|+.+++||+-.++......- ...-+.+.|. |.|.+++.+..++
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a~v~~L------------------------------~~~at~v~w~-~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVAFVLNL------------------------------KNKATLVSWS-PQGDHFVVSGRNK 190 (362)
T ss_pred EEEEcCCceeeeehhhcCccceeecc------------------------------CCcceeeEEc-CCCCEEEEEeccE
Confidence 88999999999999999876544321 3334458886 9999888887654
Q ss_pred cEEEEecCC
Q 001321 273 DILLWNTST 281 (1100)
Q Consensus 273 ~I~lWd~~~ 281 (1100)
|-+|.+.+
T Consensus 191 -i~i~q~d~ 198 (362)
T KOG0294|consen 191 -IDIYQLDN 198 (362)
T ss_pred -EEEEeccc
Confidence 77887653
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.4e-19 Score=204.07 Aligned_cols=249 Identities=15% Similarity=0.174 Sum_probs=185.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc----------------------------e----------------
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----------------------------E---------------- 68 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~----------------------------~---------------- 68 (1100)
.|.+.|-|+-||+||+|||+|+.||.||||-.... +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 67899999999999999999999999999976440 0
Q ss_pred --E---------------EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecC-CC
Q 001321 69 --G---------------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISG-SH 130 (1100)
Q Consensus 69 --~---------------~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~-~~ 130 (1100)
. ....+|.+.|-.|.|+.+ ++|+|.+-|.+|++|++..+..|+.+.|..-|||++|+|- .+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 0 012358899999999999 7999999999999999999999999999999999999995 57
Q ss_pred EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC
Q 001321 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 131 ~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
|+++|+-||.|+||.+.. .++..- +.+. .-|+++.|.| +|+..++|+-+|.+++|+....
T Consensus 424 yFiSGSLD~KvRiWsI~d--~~Vv~W-~Dl~---------------~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISD--KKVVDW-NDLR---------------DLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred cEeecccccceEEeecCc--CeeEee-hhhh---------------hhheeEEecc--CCceEEEEEeccEEEEEEccCC
Confidence 999999999999999863 333311 1122 6699999988 6888999999999999999988
Q ss_pred EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCccc
Q 001321 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQT 290 (1100)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~ 290 (1100)
+....+.- . ++ ...+ ...++||++-|+.-+-+.|++.+.|..||++|..+...
T Consensus 484 k~~~~~~I-----~--~~----~~Kk----------~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l------ 536 (712)
T KOG0283|consen 484 KLVSDFHI-----R--LH----NKKK----------KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL------ 536 (712)
T ss_pred eEEEeeeE-----e--ec----cCcc----------ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh------
Confidence 77543311 0 00 0000 11448999998744445688889999999999965422
Q ss_pred CCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCc
Q 001321 291 GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1100)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~ 351 (1100)
+.++.-... ...++. ..+..+|..+|++++|. .+.+|..
T Consensus 537 -----v~KfKG~~n-~~SQ~~---------Asfs~Dgk~IVs~seDs-------~VYiW~~ 575 (712)
T KOG0283|consen 537 -----VHKFKGFRN-TSSQIS---------ASFSSDGKHIVSASEDS-------WVYIWKN 575 (712)
T ss_pred -----hhhhccccc-CCccee---------eeEccCCCEEEEeecCc-------eEEEEeC
Confidence 222211000 011111 12666999999999876 5566654
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-17 Score=162.55 Aligned_cols=305 Identities=15% Similarity=0.183 Sum_probs=220.7
Q ss_pred ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc------CCCc--------ee--eeeecCCCeEEEEEecCCC
Q 001321 67 IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL------ESRS--------LA--CCLKWESNITAFSVISGSH 130 (1100)
Q Consensus 67 ~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~------~s~~--------~l--~~~~~~~~Vt~~~~s~~~~ 130 (1100)
.+.+...+-...|.+++|.|+|+.-+.++...+++|--+ +.+. ++ ....|.+.|.|.+|+|.++
T Consensus 23 f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred eEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 355667777889999999999998888888888887643 2221 11 2225678999999999999
Q ss_pred EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec--cCCCCCEEEEEEcCCEEEEE--E
Q 001321 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH--PNSSGNRVLIAYENALVILW--D 206 (1100)
Q Consensus 131 ~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~--P~~~g~~ll~~~~dg~V~lw--d 206 (1100)
++++|+.|.+|++..++.++.........+.-|. +.|..++|- |...+ .+++....|...|| |
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhd------------gtirdl~fld~~~s~~-~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD------------GTIRDLAFLDDPESGG-AILASAGAGDCKIYITD 169 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecC------------CceeeeEEecCCCcCc-eEEEecCCCcceEEEee
Confidence 9999999999999999887766654333444444 889999993 33334 46665555544444 5
Q ss_pred ccCCEE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCC
Q 001321 207 VSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAST 285 (1100)
Q Consensus 207 l~~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~ 285 (1100)
-..+.. ..+.|| .+-|.++. +=+|.++++|+.|.+|++||+.-.
T Consensus 170 c~~g~~~~a~sgh------------------------------tghilaly--swn~~m~~sgsqdktirfwdlrv~--- 214 (350)
T KOG0641|consen 170 CGRGQGFHALSGH------------------------------TGHILALY--SWNGAMFASGSQDKTIRFWDLRVN--- 214 (350)
T ss_pred cCCCCcceeecCC------------------------------cccEEEEE--EecCcEEEccCCCceEEEEeeecc---
Confidence 545543 334555 67787776 245899999999999999998522
Q ss_pred CCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeee
Q 001321 286 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 365 (1100)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l 365 (1100)
. |.. +++-.+..
T Consensus 215 ----------~--------------------~v~-------------------------~l~~~~~~------------- 226 (350)
T KOG0641|consen 215 ----------S--------------------CVN-------------------------TLDNDFHD------------- 226 (350)
T ss_pred ----------c--------------------eee-------------------------eccCcccC-------------
Confidence 0 000 00000000
Q ss_pred cCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEec
Q 001321 366 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 445 (1100)
Q Consensus 366 ~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~ 445 (1100)
T Consensus 227 -------------------------------------------------------------------------------- 226 (350)
T KOG0641|consen 227 -------------------------------------------------------------------------------- 226 (350)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCchhhHhHHHhhccccCCCcccCcccccccCCc-ccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeec
Q 001321 446 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV-PSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALD 524 (1100)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~-~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~ 524 (1100)
||. .+.+..++..|.+++|++|+.|.+.-+||+..+...
T Consensus 227 ----------------------------------~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i------ 266 (350)
T KOG0641|consen 227 ----------------------------------GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI------ 266 (350)
T ss_pred ----------------------------------CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee------
Confidence 000 000112256688889999999999999999988865
Q ss_pred cceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCc
Q 001321 525 AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 604 (1100)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~ 604 (1100)
.....|...|.|+.|+|...+|.+++.|..|++-|+...-.. + .++.+.-.|+.
T Consensus 267 -----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-------------------e--l~~~vv~ehkd 320 (350)
T KOG0641|consen 267 -----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-------------------E--LPIMVVAEHKD 320 (350)
T ss_pred -----eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-------------------c--CceEEEEeccC
Confidence 456789999999999999999999999999999999865211 0 13455578999
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 605 PVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 605 ~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
.+..+.|.|...-+.+.+.|.++.+|-+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999888999999999999765
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=201.20 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=216.0
Q ss_pred EEEEe-cCCCEEEEEeCCCcEEEEEEecCCCeeeee-ceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC
Q 001321 122 AFSVI-SGSHFMYIGDENGLMSVIKYDADEGKLFQL-PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1100)
Q Consensus 122 ~~~~s-~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d 199 (1100)
++..+ |.+++|++|++||.|++|+++.+.+..... ..++..|. +.|..+.. ..+++.|++++.|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs------------DWVNDiiL--~~~~~tlIS~SsD 94 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS------------DWVNDIIL--CGNGKTLISASSD 94 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhH------------hHHhhHHh--hcCCCceEEecCC
Confidence 33344 456789999999999999998765543321 11344444 77888877 5577669999999
Q ss_pred CEEEEEEccCCE---EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEE
Q 001321 200 ALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1100)
Q Consensus 200 g~V~lwdl~~~~---~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~l 276 (1100)
-+|++|+...+. ......| ...|.|+++..++...+|+|+-|+.|.+
T Consensus 95 tTVK~W~~~~~~~~c~stir~H------------------------------~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTH------------------------------KDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred ceEEEeecccCcchhHhhhhcc------------------------------cchheeeeecccCceeEEecCCCccEEE
Confidence 999999987763 2233444 7889999984488999999999999999
Q ss_pred EecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcccccc
Q 001321 277 WNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMEN 356 (1100)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~ 356 (1100)
||++++.... ..+.+.+. . . .
T Consensus 145 WDin~~~~~l---~~s~n~~t-------------------------~----~------------------s--------- 165 (735)
T KOG0308|consen 145 WDINTGTATL---VASFNNVT-------------------------V----N------------------S--------- 165 (735)
T ss_pred EEccCcchhh---hhhccccc-------------------------c----c------------------c---------
Confidence 9998762100 00000000 0 0 0
Q ss_pred ceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCc
Q 001321 357 LRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPI 436 (1100)
Q Consensus 357 ~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 436 (1100)
T Consensus 166 -------------------------------------------------------------------------------- 165 (735)
T KOG0308|consen 166 -------------------------------------------------------------------------------- 165 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCc
Q 001321 437 MTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV 516 (1100)
Q Consensus 437 it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~ 516 (1100)
+..|....+..++..+.+.++++|+-.+-+|+||..+..
T Consensus 166 -----------------------------------------l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 166 -----------------------------------------LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred -----------------------------------------CCCCCccceeeeecCCcceEEEecCcccceEEecccccc
Confidence 000111111223455666789999999999999988776
Q ss_pred eeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeE
Q 001321 517 FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCR 596 (1100)
Q Consensus 517 l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 596 (1100)
-. +.+.+|...|.+|-.++||+.+++|+.||+|++|++... +|+
T Consensus 205 ki-----------mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-------------------------rCl 248 (735)
T KOG0308|consen 205 KI-----------MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-------------------------RCL 248 (735)
T ss_pred ce-----------eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-------------------------cee
Confidence 44 568899999999999999999999999999999999875 488
Q ss_pred EEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCC
Q 001321 597 AVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREV 676 (1100)
Q Consensus 597 ~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~ 676 (1100)
.++..|...|++|..+|+-..+.+|+.||.|..=|++++.... ....-..+|..+........
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t---lick~daPv~~l~~~~~~~~-------------- 311 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST---LICKEDAPVLKLHLHEHDNS-------------- 311 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe---EeecCCCchhhhhhccccCC--------------
Confidence 8999999999999999999999999999999999999864331 11234456777766543332
Q ss_pred CCCCCceEEEEEecceeEEEEeCC
Q 001321 677 PVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 677 ~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
++++|.|+.|.-|..+
T Consensus 312 --------~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 312 --------VWVTTTDSSIKRWKLE 327 (735)
T ss_pred --------ceeeeccccceecCCc
Confidence 5999999999999943
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=9.4e-19 Score=177.94 Aligned_cols=284 Identities=17% Similarity=0.249 Sum_probs=189.7
Q ss_pred ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
..+..|.+++|+|. ..+++.|+.||+||+|++... +.+.. -....+ .++|.++.| +++|+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~--ka~~~~------------~~PvL~v~W--sddgskV 87 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVP--KAQQSH------------DGPVLDVCW--SDDGSKV 87 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecC-Ccccc--hhhhcc------------CCCeEEEEE--ccCCceE
Confidence 45578999999994 456669999999999999864 33331 112222 289999999 6689999
Q ss_pred EEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC--CEEEEEEcC
Q 001321 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG--SILAVGYID 271 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg--~~l~sg~~D 271 (1100)
++|+.|+.+++||+.++++.++-.| .++|.++.|. +.. ..|+||+-|
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~H------------------------------d~pvkt~~wv-~~~~~~cl~TGSWD 136 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAH------------------------------DAPVKTCHWV-PGMNYQCLVTGSWD 136 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeec------------------------------ccceeEEEEe-cCCCcceeEecccc
Confidence 9999999999999999998888777 8889999998 444 489999999
Q ss_pred CcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCc
Q 001321 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWS 351 (1100)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~ 351 (1100)
.+|++||.... .++..+.+... +... +-.. .
T Consensus 137 KTlKfWD~R~~-----------~pv~t~~LPeR-----------vYa~---Dv~~-p----------------------- 167 (347)
T KOG0647|consen 137 KTLKFWDTRSS-----------NPVATLQLPER-----------VYAA---DVLY-P----------------------- 167 (347)
T ss_pred cceeecccCCC-----------Ceeeeeeccce-----------eeeh---hccC-c-----------------------
Confidence 99999998754 44544444221 0000 0000 0
Q ss_pred cccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccc
Q 001321 352 SGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIP 431 (1100)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~ 431 (1100)
.++|.+.+.++.+|+..+-......
T Consensus 168 --------------------------------------m~vVata~r~i~vynL~n~~te~k~----------------- 192 (347)
T KOG0647|consen 168 --------------------------------------MAVVATAERHIAVYNLENPPTEFKR----------------- 192 (347)
T ss_pred --------------------------------------eeEEEecCCcEEEEEcCCCcchhhh-----------------
Confidence 1223333344555542111110000
Q ss_pred cCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEee
Q 001321 432 ISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWD 511 (1100)
Q Consensus 432 ~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd 511 (1100)
+.+..+. .+.+++...++..++.|+-.|.+-|-.
T Consensus 193 --------------------------~~SpLk~--------------------Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 193 --------------------------IESPLKW--------------------QTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred --------------------------hcCcccc--------------------eeeEEEEEecCCceEeeeecceEEEEe
Confidence 0000000 112335556666778999999999988
Q ss_pred CCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCC
Q 001321 512 ATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGK 591 (1100)
Q Consensus 512 ~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 591 (1100)
+..+.....+.++..-..-...+.-.+|..|+|+|.-..|++++.||+..+||-+...
T Consensus 227 id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---------------------- 284 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---------------------- 284 (347)
T ss_pred cCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh----------------------
Confidence 8876434445444321100011123579999999999999999999999999977642
Q ss_pred cceeEEEEeecCcCeEEEEEcCCCCEEEEE
Q 001321 592 ISLCRAVFSLVNSPVRALQFTSSGAKLAVG 621 (1100)
Q Consensus 592 ~~~~~~~~~~h~~~VtsLafSp~g~~LavG 621 (1100)
-+.....|..+|++.+|+.+|.++|-+
T Consensus 285 ---kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 285 ---KLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---hhhccCcCCCccceeEecCCCCEEEEE
Confidence 234456799999999999999887754
No 103
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7.9e-19 Score=174.22 Aligned_cols=147 Identities=14% Similarity=0.192 Sum_probs=119.5
Q ss_pred CCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee-CCCeEEEEecCceEEEEEecCCCCCc
Q 001321 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAK 572 (1100)
Q Consensus 494 ~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp-d~~~Lasg~~dG~V~lw~l~~~~~~~ 572 (1100)
..+++++++.||+.||||+....-. +.+..|...|.|+.|+. +...|++|+.|+.|+.||++.-..
T Consensus 159 ~~nlfas~Sgd~~l~lwdvr~~gk~-----------~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-- 225 (311)
T KOG0277|consen 159 IPNLFASASGDGTLRLWDVRSPGKF-----------MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-- 225 (311)
T ss_pred CCCeEEEccCCceEEEEEecCCCce-----------eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--
Confidence 3458999999999999998766433 33667888999999998 556789999999999999987532
Q ss_pred ceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC-CEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCe
Q 001321 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1100)
Q Consensus 573 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V 651 (1100)
++..+.+|.-+|+.++|||.. .+||+++-|-+++|||...+.-.. .....|++.|
T Consensus 226 ----------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~--e~~~~HtEFv 281 (311)
T KOG0277|consen 226 ----------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAI--ETVDHHTEFV 281 (311)
T ss_pred ----------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhh--hhhhccceEE
Confidence 466778999999999999965 689999999999999998554331 1223599999
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 652 ~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
-.++|+... ...+++.+-|+.+.||+
T Consensus 282 ~g~Dws~~~---------------------~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 282 CGLDWSLFD---------------------PGQVASTGWDELLYVWN 307 (311)
T ss_pred ecccccccc---------------------Cceeeecccccceeeec
Confidence 999999542 35699999999999998
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-17 Score=171.42 Aligned_cols=284 Identities=14% Similarity=0.161 Sum_probs=207.3
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeC--CCcEEEEEEecCCC
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEG 151 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~--dG~V~Iw~~d~~~~ 151 (1100)
-.+.|.+|.|+++|.+|++++.|.+|+++|..+++.+.++ .....|..+.|-.....++-++. |.+|+..++.. +
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--N 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--N 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--C
Confidence 4678999999999999999999999999999999999888 44456777777777776666665 78888877653 4
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCC
Q 001321 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1100)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~ 231 (1100)
+.... +++|. ..|.+|..+|- +..+++++.|.+|++||++..+..-...-
T Consensus 91 kylRY---F~GH~------------~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------- 140 (311)
T KOG1446|consen 91 KYLRY---FPGHK------------KRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------- 140 (311)
T ss_pred ceEEE---cCCCC------------ceEEEEEecCC--CCeEEecccCCeEEeeEecCCCCceEEec-------------
Confidence 55533 88888 89999999995 35699999999999999997655433211
Q ss_pred CCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceE
Q 001321 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1100)
Q Consensus 232 ~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 311 (1100)
.++ ..++| .|.|..+|++...+.|+++|+..- .+.|..
T Consensus 141 -----------------~~~-pi~Af-Dp~GLifA~~~~~~~IkLyD~Rs~-----------------------dkgPF~ 178 (311)
T KOG1446|consen 141 -----------------SGR-PIAAF-DPEGLIFALANGSELIKLYDLRSF-----------------------DKGPFT 178 (311)
T ss_pred -----------------CCC-cceeE-CCCCcEEEEecCCCeEEEEEeccc-----------------------CCCCce
Confidence 111 12344 599999999998889999998632 011111
Q ss_pred EEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceE
Q 001321 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1100)
Q Consensus 312 ~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l 391 (1100)
.+ .+...
T Consensus 179 tf---------------------------------~i~~~---------------------------------------- 185 (311)
T KOG1446|consen 179 TF---------------------------------SITDN---------------------------------------- 185 (311)
T ss_pred eE---------------------------------ccCCC----------------------------------------
Confidence 11 00000
Q ss_pred EEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCccc
Q 001321 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1100)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1100)
T Consensus 186 -------------------------------------------------------------------------------- 185 (311)
T KOG1446|consen 186 -------------------------------------------------------------------------------- 185 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeE
Q 001321 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL 551 (1100)
Q Consensus 472 ~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~L 551 (1100)
.+..| .-+.|++||+.++.+...+.+++-|+-.|.+...+....+... .+ -...|+||++++
T Consensus 186 ~~~ew----------~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~-------~~-~~a~ftPds~Fv 247 (311)
T KOG1446|consen 186 DEAEW----------TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN-------LP-LSATFTPDSKFV 247 (311)
T ss_pred Cccce----------eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC-------cc-eeEEECCCCcEE
Confidence 00000 1226899999999999999999999999986644433322211 12 356799999999
Q ss_pred EEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEee-cCcCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001321 552 AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1100)
Q Consensus 552 asg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-h~~~VtsLafSp~g~~LavGs~dG~V~vw 630 (1100)
.+|+.||+|.+|++.+.. .+..+.+ +.++++++.|+|....+|+++.. +.+|
T Consensus 248 l~gs~dg~i~vw~~~tg~-------------------------~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~--l~fw 300 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGK-------------------------KVAVLRGPNGGPVSCVRFNPRYAMFVSASSN--LVFW 300 (311)
T ss_pred EEecCCCcEEEEEcCCCc-------------------------EeeEecCCCCCCccccccCCceeeeeecCce--EEEE
Confidence 999999999999997652 3566677 79999999999999888887654 4445
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=202.96 Aligned_cols=276 Identities=18% Similarity=0.280 Sum_probs=215.2
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee-e-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC-L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~-~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~ 152 (1100)
+...+.+..|. .+++++++.+++|.+||..++..+.. + .|.+.|.++++...++.+++|+.|.+++||++.. +.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--g~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--GE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--Cc
Confidence 45578888888 46799999999999999999987766 4 8999999999999999999999999999999765 34
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec-CCcccccccccCCC
Q 001321 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG-GKDLQLKDGVVDSP 231 (1100)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~-~~~~~~~~~l~~~~ 231 (1100)
-. ..+.+|. +.|.++...+ .++++|+.|.+|++|++.++..+.+++ |
T Consensus 283 C~---~~l~gh~------------stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h------------- 330 (537)
T KOG0274|consen 283 CT---HSLQGHT------------SSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGH------------- 330 (537)
T ss_pred EE---EEecCCC------------ceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccc-------------
Confidence 43 2377777 8899998844 347788999999999999998877765 7
Q ss_pred CCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceE
Q 001321 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVI 311 (1100)
Q Consensus 232 ~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 311 (1100)
...|.++.. ++..+++|+.||+|++||+.+++....
T Consensus 331 -----------------~~~V~~v~~---~~~~lvsgs~d~~v~VW~~~~~~cl~s------------------------ 366 (537)
T KOG0274|consen 331 -----------------TGPVNCVQL---DEPLLVSGSYDGTVKVWDPRTGKCLKS------------------------ 366 (537)
T ss_pred -----------------cccEEEEEe---cCCEEEEEecCceEEEEEhhhceeeee------------------------
Confidence 788999884 388999999999999999864411000
Q ss_pred EEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceE
Q 001321 312 VLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADL 391 (1100)
Q Consensus 312 ~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l 391 (1100)
+ .| ..
T Consensus 367 -l------------------~g-H~------------------------------------------------------- 371 (537)
T KOG0274|consen 367 -L------------------SG-HT------------------------------------------------------- 371 (537)
T ss_pred -e------------------cC-Cc-------------------------------------------------------
Confidence 0 00 00
Q ss_pred EEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCccc
Q 001321 392 FVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQA 471 (1100)
Q Consensus 392 ~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1100)
+.++ +.
T Consensus 372 ------~~V~-------------------------------------sl------------------------------- 377 (537)
T KOG0274|consen 372 ------GRVY-------------------------------------SL------------------------------- 377 (537)
T ss_pred ------ceEE-------------------------------------EE-------------------------------
Confidence 0000 00
Q ss_pred CcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCC-ceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCe
Q 001321 472 GHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1100)
Q Consensus 472 ~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~ 550 (1100)
.+... +.+++|+.|++|++||+.+. .+. ..+.+|..-|..+. ..++.
T Consensus 378 ------------------~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~-----------~tl~~h~~~v~~l~--~~~~~ 425 (537)
T KOG0274|consen 378 ------------------IVDSE-NRLLSGSLDTTIKVWDLRTKRKCI-----------HTLQGHTSLVSSLL--LRDNF 425 (537)
T ss_pred ------------------EecCc-ceEEeeeeccceEeecCCchhhhh-----------hhhcCCcccccccc--cccce
Confidence 01111 47899999999999999998 555 44677877775554 46789
Q ss_pred EEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEee-cCcCeEEEEEcCCCCEEEEEeCCceEEE
Q 001321 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1100)
Q Consensus 551 Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-h~~~VtsLafSp~g~~LavGs~dG~V~v 629 (1100)
|++++.||.|++||...+ .++..+.+ |.+.|+++++. ...+++++.||++.+
T Consensus 426 Lvs~~aD~~Ik~WD~~~~-------------------------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEG-------------------------ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred eEeccccccEEEeecccC-------------------------ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 999999999999998876 25566666 78999999998 446888889999999
Q ss_pred EecCCceEE
Q 001321 630 LDMNLLSVL 638 (1100)
Q Consensus 630 wD~~~~~~~ 638 (1100)
||+++++..
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 999998877
No 106
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=2.2e-18 Score=202.50 Aligned_cols=205 Identities=13% Similarity=0.109 Sum_probs=157.2
Q ss_pred ecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCc---------eEEEeCCCCCCEEEEEEEeCCCEE-EEEECCCc
Q 001321 31 HYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI---------EGLLISPSQLPYKNLEFLQNQGFL-ISITNDNE 99 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~---------~~~~~~~h~~~V~~l~fs~d~~~L-ls~s~d~~ 99 (1100)
..||.+.|.+++|+|+ +.+||+|+.||.|+||++... ....+.+|...|.+++|+|++..+ ++++.|++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3589999999999997 789999999999999998532 122456899999999999988764 68899999
Q ss_pred EEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 100 IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
|+|||+.+++.+..+.+...|++++|+|++.+|++++.|+.|+||++.. +... ..+.+|. +.+
T Consensus 150 IrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i---~tl~gH~------------g~~ 212 (568)
T PTZ00420 150 VNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIA---SSFHIHD------------GGK 212 (568)
T ss_pred EEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEE---EEEeccc------------CCc
Confidence 9999999998887777778899999999999999999999999999875 3333 2355554 332
Q ss_pred -----EEEEeccCCCCCEEEEEEcCC----EEEEEEccC-CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCC
Q 001321 180 -----VGVLPHPNSSGNRVLIAYENA----LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1100)
Q Consensus 180 -----~sv~f~P~~~g~~ll~~~~dg----~V~lwdl~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~ 249 (1100)
....|+| ++.++++++.++ .|+|||++. +..+....+ ... .
T Consensus 213 ~s~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-------d~~--------------------~ 263 (568)
T PTZ00420 213 NTKNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-------DNA--------------------S 263 (568)
T ss_pred eeEEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-------cCC--------------------c
Confidence 3334545 566788877664 799999985 444444332 000 2
Q ss_pred CceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 250 KEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 250 ~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+.+... |..++|.++++|..|+.|++|++..+
T Consensus 264 ~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 264 APLIPH-YDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred cceEEe-eeCCCCCEEEEEECCCeEEEEEccCC
Confidence 233333 34577999999999999999999754
No 107
>PTZ00420 coronin; Provisional
Probab=99.82 E-value=9.4e-18 Score=197.15 Aligned_cols=178 Identities=12% Similarity=0.138 Sum_probs=136.4
Q ss_pred EECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeC-CCEEEEEECCCcEEEEEcCCCc--------eeee-eecCCCeE
Q 001321 53 ATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLESRS--------LACC-LKWESNIT 121 (1100)
Q Consensus 53 gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d-~~~Lls~s~d~~I~vWd~~s~~--------~l~~-~~~~~~Vt 121 (1100)
|+.+|.|+||+.... .+..+.+|.++|.+++|+|+ +.+|++++.|++|+|||+.++. .+.. ..|...|+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556789999987443 44567799999999999996 6899999999999999998642 1222 36778999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC
Q 001321 122 AFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 122 ~~~~s~~~~~-l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg 200 (1100)
+++|+|++.. +++|+.||+|+||++... ... +.+. +. ..|.+++|+| +|.+|++++.|+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg--~~~---~~i~-~~------------~~V~Slswsp--dG~lLat~s~D~ 189 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE--KRA---FQIN-MP------------KKLSSLKWNI--KGNLLSGTCVGK 189 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCC--cEE---EEEe-cC------------CcEEEEEECC--CCCEEEEEecCC
Confidence 9999999876 578899999999998753 222 2232 22 5799999988 788888999999
Q ss_pred EEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceE-----EEEEecCCCCEEEEEEcCC--
Q 001321 201 LVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS-----ALCWASSSGSILAVGYIDG-- 272 (1100)
Q Consensus 201 ~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~-----sl~w~spdg~~l~sg~~DG-- 272 (1100)
.|+|||+++++++. +.+| .+.+. ...| ++++.+|++++.|+
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH------------------------------~g~~~s~~v~~~~f-s~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIH------------------------------DGGKNTKNIWIDGL-GGDDNYILSTGFSKNN 238 (568)
T ss_pred EEEEEECCCCcEEEEEecc------------------------------cCCceeEEEEeeeE-cCCCCEEEEEEcCCCC
Confidence 99999999987654 4455 22222 2233 48888999988774
Q ss_pred --cEEEEecCC
Q 001321 273 --DILLWNTST 281 (1100)
Q Consensus 273 --~I~lWd~~~ 281 (1100)
.|++||+..
T Consensus 239 ~R~VkLWDlr~ 249 (568)
T PTZ00420 239 MREMKLWDLKN 249 (568)
T ss_pred ccEEEEEECCC
Confidence 799999864
No 108
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=2.1e-17 Score=193.68 Aligned_cols=175 Identities=16% Similarity=0.067 Sum_probs=133.9
Q ss_pred ccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeecccee--eeeecCCCCCeeEEEEee-CCCeEEEEecCceEEEEE
Q 001321 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQ--GIEVAGSRAPVSTLSFCF-INSSLAVGNEFGLVYIYN 564 (1100)
Q Consensus 488 ~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~--~~~l~~h~~~Vt~lafsp-d~~~Lasg~~dG~V~lw~ 564 (1100)
....++++..+++++.+.....|+...+.......-.+++. ...+.+|..+|++++|+| ++.+||+|+.||.|++|+
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 33566787788889989988999987664321111111111 123679999999999999 889999999999999999
Q ss_pred ecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC-CEEEEEeCCceEEEEecCCceEEEEeec
Q 001321 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1100)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-~~LavGs~dG~V~vwD~~~~~~~~~~~~ 643 (1100)
+....... ....++..+.+|..+|.+|+|+|++ .+|++|+.|++|+|||+.++..+. .
T Consensus 105 i~~~~~~~------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---~ 163 (493)
T PTZ00421 105 IPEEGLTQ------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---V 163 (493)
T ss_pred cCCCcccc------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---E
Confidence 97642100 0012456778999999999999986 699999999999999999987763 3
Q ss_pred CCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccc
Q 001321 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1100)
Q Consensus 644 ~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l 705 (1100)
+.+|...|.+++|++.+ .+|++++.||.|.+||..+|+.+
T Consensus 164 l~~h~~~V~sla~spdG----------------------~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDG----------------------SLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred EcCCCCceEEEEEECCC----------------------CEEEEecCCCEEEEEECCCCcEE
Confidence 34699999999998544 45999999999999997776544
No 109
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.1e-19 Score=188.80 Aligned_cols=139 Identities=15% Similarity=0.247 Sum_probs=105.8
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1100)
.++|++.|.++|+||++.+.+.....+. .++.+++.+|..+.+.+|+.+|.|.+.++...+.+....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~fp------------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v- 256 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTITFP------------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGV- 256 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEecC------------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccc-
Confidence 7999999999999999999876444433 589999999999999999999999999887654211100
Q ss_pred eccCCCceeeccCCCcceeEEEEeecCc--CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEE
Q 001321 577 VLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1100)
Q Consensus 577 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~--~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl 654 (1100)
..++ .. .+ -..+..+.+|.+ +||+|++|-||.+|++|+.||.|+|||+.+..++ +......++|+.+
T Consensus 257 ---~~k~-~~---~~-~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i---Rtl~~~kgpVtnL 325 (476)
T KOG0646|consen 257 ---NQKG-RH---EE-NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI---RTLQTSKGPVTNL 325 (476)
T ss_pred ---cccc-cc---cc-cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH---HHHhhhcccccee
Confidence 0000 00 00 013456789988 9999999999999999999999999999988877 2222257889999
Q ss_pred EEeec
Q 001321 655 TWTEF 659 (1100)
Q Consensus 655 ~fs~~ 659 (1100)
.+.++
T Consensus 326 ~i~~~ 330 (476)
T KOG0646|consen 326 QINPL 330 (476)
T ss_pred Eeecc
Confidence 88754
No 110
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.5e-18 Score=175.50 Aligned_cols=170 Identities=15% Similarity=0.218 Sum_probs=117.6
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-----eeeeeecCCCeEEEEEecCCCEEEEEeCCC-cEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----LACCLKWESNITAFSVISGSHFMYIGDENG-LMSVI 144 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-----~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG-~V~Iw 144 (1100)
.+.+|+..|++|+|+.||.+|++++.|++|++|++..-. .+...-.-+..|.+.|.|+.+-+++...+| +++++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 456899999999999999999999999999999997531 111111224689999999998777766554 57777
Q ss_pred EEecC-CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccc
Q 001321 145 KYDAD-EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQL 223 (1100)
Q Consensus 145 ~~d~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~ 223 (1100)
.++.. +|........+. ...+++.+.-.|..+-. .+.+.++++++.|-.|.+|++. |+++....-+
T Consensus 161 k~~K~~dG~~~~~~v~~D------~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn---- 227 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHID------NLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN---- 227 (420)
T ss_pred EeeecccCCCCccccccc------ccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccc----
Confidence 76542 233321101111 12245556667777766 6678889999999999999999 5555443221
Q ss_pred cccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 224 KDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 224 ~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
+ ...-.+. .||+|++|++++-.-.+.+|.+
T Consensus 228 --q----------------------~~n~~aa--vSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 228 --Q----------------------SSNYDAA--VSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred --c----------------------cccccee--eCCCCcEEEEecCCCCceEEEE
Confidence 1 1111122 3799999999999999999965
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=185.26 Aligned_cols=197 Identities=20% Similarity=0.333 Sum_probs=157.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE---EEeCCCCCCEEEEEEEeCCC-EEEEEECCCcEEEEEcCCCce
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---LLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~---~~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
.+.|+++.|+|...+|.||+.||.++||-+++..- .-+.-...||.+.+|.|+|. .+++++....+..||+.+.++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 45799999999999999999999999998866532 22333567999999999998 888888899999999999876
Q ss_pred eeeee---c-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 111 ACCLK---W-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 111 l~~~~---~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
...-. + ...+..+.++++++++++.+.+|.|.+....+ +.+.. .++++ +.|..+.|+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT--~eli~-s~Kie---------------G~v~~~~fs- 353 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT--KELIT-SFKIE---------------GVVSDFTFS- 353 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh--hhhhh-eeeec---------------cEEeeEEEe-
Confidence 54432 2 23588999999999999999999887765443 44443 25555 779999995
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCce--EEEEEecCCCCE
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI--SALCWASSSGSI 264 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V--~sl~w~spdg~~ 264 (1100)
.++++|++++.+|.|.+||+....++..+.- ++.| +++|- +++|.+
T Consensus 354 -Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D------------------------------~G~v~gts~~~-S~ng~y 401 (514)
T KOG2055|consen 354 -SDSKELLASGGTGEVYVWNLRQNSCLHRFVD------------------------------DGSVHGTSLCI-SLNGSY 401 (514)
T ss_pred -cCCcEEEEEcCCceEEEEecCCcceEEEEee------------------------------cCccceeeeee-cCCCce
Confidence 5889999999999999999999987766543 3334 45774 599999
Q ss_pred EEEEEcCCcEEEEecCCC
Q 001321 265 LAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1100)
+++|+..|.|-+||..+.
T Consensus 402 lA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 402 LATGSDSGIVNIYDGNSC 419 (514)
T ss_pred EEeccCcceEEEeccchh
Confidence 999999999999997643
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3e-18 Score=192.87 Aligned_cols=190 Identities=18% Similarity=0.299 Sum_probs=153.4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-e-c
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K-W 116 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~-~ 116 (1100)
-+.|+ ..+.||+|. +..|++|+....++..+.. +...|+++.|+++|.+|+.+..+|.|.|||..+.+.+..+ . |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 46677 567899987 4689999996666543332 3889999999999999999999999999999998888777 3 6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 117 ~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
...|.|++|. ...+.+|+.+|.|.++++........ .+.+|. ..|+.+.|++ ++.++++|
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~------------qeVCgLkws~--d~~~lASG 319 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----TLQGHR------------QEVCGLKWSP--DGNQLASG 319 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----hhhccc------------ceeeeeEECC--CCCeeccC
Confidence 8899999998 77899999999999999876332222 144454 8899999966 89999999
Q ss_pred EcCCEEEEEEccCCEE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC-CCEEEEE--EcCC
Q 001321 197 YENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-GSILAVG--YIDG 272 (1100)
Q Consensus 197 ~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd-g~~l~sg--~~DG 272 (1100)
+.|..+.|||.....+ ..+.+| ..+|-.++|. |- ...||+| ..|+
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H------------------------------~aAVKA~awc-P~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEH------------------------------TAAVKALAWC-PWQSGLLATGGGSADR 368 (484)
T ss_pred CCccceEeccCCCccccEEEecc------------------------------ceeeeEeeeC-CCccCceEEcCCCccc
Confidence 9999999999966554 455666 8889999995 64 4567776 4699
Q ss_pred cEEEEecCCC
Q 001321 273 DILLWNTSTT 282 (1100)
Q Consensus 273 ~I~lWd~~~~ 282 (1100)
.|+|||..++
T Consensus 369 ~i~fwn~~~g 378 (484)
T KOG0305|consen 369 CIKFWNTNTG 378 (484)
T ss_pred EEEEEEcCCC
Confidence 9999999766
No 113
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.5e-18 Score=172.34 Aligned_cols=196 Identities=15% Similarity=0.241 Sum_probs=149.5
Q ss_pred EEEEEcC-CCCEEEEEEC-------CCeEEEEeCC---CceEEEeCCCCCCEEEEEEEeCC-CEEEEEECCCcEEEEEcC
Q 001321 39 SILAFDH-IQRLLAIATL-------DGRIKVIGGD---GIEGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 39 ~~la~sp-~~~lLA~gs~-------dG~I~vw~~~---~~~~~~~~~h~~~V~~l~fs~d~-~~Lls~s~d~~I~vWd~~ 106 (1100)
-.+.||| ..++||+++. .|++.|-+.. +........-...+-.|+|+++- ..+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 3578888 3455666653 3888888874 33344445566789999999853 578899999999999965
Q ss_pred CC-ceeeee-ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 107 SR-SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 107 s~-~~l~~~-~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
.. ..+..+ .|...|.++.+++.. +.+++++.||+|++|+.+... -. .++.+|. .-|...+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv---~Tf~gh~------------~~Iy~a~ 154 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SV---QTFNGHN------------SCIYQAA 154 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--ce---EeecCCc------------cEEEEEe
Confidence 43 355555 788999999999865 467788999999999976422 22 2366766 8899999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCC-EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
|+|. .++.+++++.||++++||++.. +...+..| ..+|.|+-|..-+.
T Consensus 155 ~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah------------------------------~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 155 FSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAH------------------------------NSEILCCDWSKYNH 203 (311)
T ss_pred cCCC-CCCeEEEccCCceEEEEEecCCCceeEEEec------------------------------cceeEeecccccCC
Confidence 9997 6677999999999999998875 33334444 66788999987788
Q ss_pred CEEEEEEcCCcEEEEecCCC
Q 001321 263 SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~ 282 (1100)
..++||+.|+.|+.||+..-
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred cEEEecCCCceEEEEehhhc
Confidence 89999999999999999643
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=5e-18 Score=172.62 Aligned_cols=212 Identities=14% Similarity=0.261 Sum_probs=172.3
Q ss_pred ccccccceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECC
Q 001321 20 TAADLNLRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 20 ~~~~~~~~~~~~~-G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d 97 (1100)
+...+..+++..| ||...|-.+|-+..+..|++++.|..-+||.+.. .+++...+|.+.|.++.|++.+.++++++.|
T Consensus 132 k~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 132 KDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred cCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence 3334556666665 8999999999999999999999999999999955 4555678999999999999999999999999
Q ss_pred CcEEEEEc------CC----------------------------------Cceeeee-ecCCCeEEEEEecCCCEEEEEe
Q 001321 98 NEIQVWSL------ES----------------------------------RSLACCL-KWESNITAFSVISGSHFMYIGD 136 (1100)
Q Consensus 98 ~~I~vWd~------~s----------------------------------~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~ 136 (1100)
++..||.. .+ +..++.+ .|.+.|.|..|-..++.+++++
T Consensus 212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence 99999962 11 0112222 5667899999999999999999
Q ss_pred CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC--EEEE
Q 001321 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIF 214 (1100)
Q Consensus 137 ~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~--~~~~ 214 (1100)
.|.+-.+||++. +.+... +.+|. ...+.+.-|| ...++++++.|-+.++||+... .+..
T Consensus 292 WDRTAnlwDVEt--ge~v~~---LtGHd------------~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~V 352 (481)
T KOG0300|consen 292 WDRTANLWDVET--GEVVNI---LTGHD------------SELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAV 352 (481)
T ss_pred ccccceeeeecc--Cceecc---ccCcc------------hhccccccCC--cceEEEEeccCceeEeccchhhcceeee
Confidence 999999999875 566643 77776 6788888888 4667889999999999999965 2334
Q ss_pred EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 215 VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+.|| ...|+++.|. .+..+++|++|.+|++||+.+.
T Consensus 353 FQGH------------------------------tdtVTS~vF~--~dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 353 FQGH------------------------------TDTVTSVVFN--TDDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred eccc------------------------------ccceeEEEEe--cCCceeecCCCceEEEeeeccc
Confidence 5566 7889999975 4566999999999999999754
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=6.2e-18 Score=170.85 Aligned_cols=225 Identities=17% Similarity=0.245 Sum_probs=177.8
Q ss_pred ccceeeeecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCceE------------E----EeCCCCCCEEEEEEEe
Q 001321 24 LNLRIAVHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEG------------L----LISPSQLPYKNLEFLQ 86 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~~~------------~----~~~~h~~~V~~l~fs~ 86 (1100)
++.+.-+.--|.+.|++|..++ .++++.+|..||.|-|||+++..- . ....|+..|+.+.|-|
T Consensus 32 Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 32 LNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred ccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEee
Confidence 3344334444558999999998 589999999999999999965430 1 2235777999999998
Q ss_pred -CCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCC---CEEEEEeCCCcEEEEEEecCCCeeeeeceeecc
Q 001321 87 -NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNISA 162 (1100)
Q Consensus 87 -d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~---~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~ 162 (1100)
|.+.+.+.+-|.+++|||..+-+....+..++.|.+-+++|-. .++|+|..+-.|++-|+.. |... ..+.+
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S--Gs~s---H~LsG 186 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS--GSFS---HTLSG 186 (397)
T ss_pred ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC--Ccce---eeecc
Confidence 6688899999999999999999999999999999999999864 5899999999999988875 5555 34788
Q ss_pred cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC--EEEEEecCCcccccccccCCCCCCCCcccc
Q 001321 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1100)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~ 240 (1100)
|. +.|.+|.|+|+.+-- |++|+.||.|++||++.. .....-.|.. ..||.
T Consensus 187 Hr------------~~vlaV~Wsp~~e~v-LatgsaDg~irlWDiRrasgcf~~lD~hn~-------k~~p~-------- 238 (397)
T KOG4283|consen 187 HR------------DGVLAVEWSPSSEWV-LATGSADGAIRLWDIRRASGCFRVLDQHNT-------KRPPI-------- 238 (397)
T ss_pred cc------------CceEEEEeccCceeE-EEecCCCceEEEEEeecccceeEEeecccC-------ccCcc--------
Confidence 87 899999999986664 899999999999999764 4444444411 00000
Q ss_pred CCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 241 GISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
+..+..+.+.|.++||. .+|.++++++.|..+++|+...|.
T Consensus 239 -~~~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 239 -LKTNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred -ccccccccceeeeeeec-ccchhhhhccCccceEEeecccCc
Confidence 11223348899999997 899999999999999999998874
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.80 E-value=3.4e-18 Score=191.27 Aligned_cols=193 Identities=19% Similarity=0.243 Sum_probs=158.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE---EeCCCCCCEEE-EEEEe-CCCEEEEEECCCcEEEEEc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKN-LEFLQ-NQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~---~~~~h~~~V~~-l~fs~-d~~~Lls~s~d~~I~vWd~ 105 (1100)
..||...|..+++.+.. .++.|+.||.+++|...+.+.+ ...+|.+-|.. ++|.+ ++.+|++++.|.+|.+|..
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 46899999888877544 7889999999999999766655 35567776666 88875 6678999999999999999
Q ss_pred CCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 106 ESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 106 ~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
.+...+..+ .|...|+|++...++. |++|+.|.+++||.... +. |.+++|. .+|+++.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~---~~l~gH~------------asVWAv~~ 148 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LV---YSLQGHT------------ASVWAVAS 148 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----hh---cccCCcc------------hheeeeee
Confidence 999988777 8999999999988887 99999999999999763 32 5577887 89999999
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
-| +++ +++|+.|.+|++|.- ...+..+.|| ..-|..++.. + +..
T Consensus 149 l~--e~~-~vTgsaDKtIklWk~-~~~l~tf~gH------------------------------tD~VRgL~vl-~-~~~ 192 (745)
T KOG0301|consen 149 LP--ENT-YVTGSADKTIKLWKG-GTLLKTFSGH------------------------------TDCVRGLAVL-D-DSH 192 (745)
T ss_pred cC--CCc-EEeccCcceeeeccC-Cchhhhhccc------------------------------hhheeeeEEe-c-CCC
Confidence 77 455 999999999999986 2234456667 7788899965 4 456
Q ss_pred EEEEEcCCcEEEEecC
Q 001321 265 LAVGYIDGDILLWNTS 280 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~ 280 (1100)
+++++.||.|++|++.
T Consensus 193 flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDLD 208 (745)
T ss_pred eEeecCCceEEEEecc
Confidence 9999999999999984
No 117
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.8e-18 Score=190.40 Aligned_cols=204 Identities=15% Similarity=0.219 Sum_probs=160.3
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEeCCCce-------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc--
Q 001321 40 ILAFD-HIQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-- 109 (1100)
Q Consensus 40 ~la~s-p~~~lLA~gs~dG~I~vw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-- 109 (1100)
++.+| |.+++|.+|+.||.|++|+..... ...+..|...|..+..+.++..|+|+++|-+|++|+...+-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 46666 566789999999999999984322 22445688899999999999999999999999999998873
Q ss_pred eeeee-ecCCCeEEEEE-ecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 110 LACCL-KWESNITAFSV-ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 110 ~l~~~-~~~~~Vt~~~~-s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
...++ .|..-|.|+++ .++..++|+|+-|+.|.+|++.....++... +.. .. ....+.+...+|.+++-+|
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s---~n~--~t-~~sl~sG~k~siYSLA~N~- 181 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS---FNN--VT-VNSLGSGPKDSIYSLAMNQ- 181 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh---ccc--cc-cccCCCCCccceeeeecCC-
Confidence 34444 78889999999 7888899999999999999999643323211 111 00 0011123347899999977
Q ss_pred CCCCEEEEEEcCCEEEEEEccCC-EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEA-QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
.|+.++.|+..+.+++||-.+. ++..+.|| ...|..+.- ++||..++
T Consensus 182 -t~t~ivsGgtek~lr~wDprt~~kimkLrGH------------------------------TdNVr~ll~-~dDGt~~l 229 (735)
T KOG0308|consen 182 -TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH------------------------------TDNVRVLLV-NDDGTRLL 229 (735)
T ss_pred -cceEEEecCcccceEEeccccccceeeeecc------------------------------ccceEEEEE-cCCCCeEe
Confidence 6788999999999999999887 55667788 778888885 59999999
Q ss_pred EEEcCCcEEEEecCCC
Q 001321 267 VGYIDGDILLWNTSTT 282 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~ 282 (1100)
++++||+|++||+.-.
T Consensus 230 s~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQ 245 (735)
T ss_pred ecCCCceEEeeecccc
Confidence 9999999999999644
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=9.5e-18 Score=171.66 Aligned_cols=158 Identities=15% Similarity=0.227 Sum_probs=129.2
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
+..+-+..|+.|.|+|.+..|+..+-||+++++|+....+...+.+..++++++|.+ ...+++|+.||.|+.+|+....
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 444556789999999999999999999999999999999989999999999999987 5678999999999999988633
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCC
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~ 230 (1100)
.. .+..|. .+|.+|.+.+- .+ .+++|+.|++|++||.........+..
T Consensus 87 ~~------~igth~------------~~i~ci~~~~~-~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~------------ 134 (323)
T KOG1036|consen 87 ED------QIGTHD------------EGIRCIEYSYE-VG-CVISGSWDKTIKFWDPRNKVVVGTFDQ------------ 134 (323)
T ss_pred ce------eeccCC------------CceEEEEeecc-CC-eEEEcccCccEEEEecccccccccccc------------
Confidence 22 255565 89999999874 34 499999999999999987443333222
Q ss_pred CCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 231 ~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+.|.++. -.|+.|++|+.|..+.+||+.+.
T Consensus 135 ------------------~kkVy~~~---v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 135 ------------------GKKVYCMD---VSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ------------------CceEEEEe---ccCCEEEEeecCceEEEEEcccc
Confidence 55676666 46889999999999999999765
No 119
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=2.5e-17 Score=164.37 Aligned_cols=274 Identities=14% Similarity=0.171 Sum_probs=203.5
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee---ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEe
Q 001321 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISG-SHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d 147 (1100)
..+|..+|..|+|.-+|.+|++++.|+++.||+++..+.+... .|.+.|-.++++|. .+.+++++.+.+|++|++.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 3568889999999999999999999999999999988666544 66778888999876 4789999999999999988
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccc
Q 001321 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGV 227 (1100)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l 227 (1100)
....... +... ..=.-+.|+| +|++++.+..|..|...|.++.++...+..
T Consensus 96 ~~k~~~~-----i~~~-------------~eni~i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~--------- 146 (313)
T KOG1407|consen 96 SGKCTAR-----IETK-------------GENINITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF--------- 146 (313)
T ss_pred cCcEEEE-----eecc-------------CcceEEEEcC--CCCEEEEecCcccEEEEEecccceeehhcc---------
Confidence 6332222 2211 2235678888 688899999999999999999887665543
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCC
Q 001321 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR 307 (1100)
Q Consensus 228 ~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 307 (1100)
...+.-++|. -++.+++.-...|.|.+-..... .|+.
T Consensus 147 ---------------------~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsL-----------kpv~---------- 183 (313)
T KOG1407|consen 147 ---------------------KFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSL-----------KPVQ---------- 183 (313)
T ss_pred ---------------------cceeeeeeec-CCCCEEEEecCCceEEEEecccc-----------cccc----------
Confidence 5667778887 44444433334466655543211 0000
Q ss_pred cceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCC
Q 001321 308 LPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNH 387 (1100)
Q Consensus 308 ~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~ 387 (1100)
++.
T Consensus 184 -----------------------------------------------------------------si~------------ 186 (313)
T KOG1407|consen 184 -----------------------------------------------------------------SIK------------ 186 (313)
T ss_pred -----------------------------------------------------------------ccc------------
Confidence 000
Q ss_pred cceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCC
Q 001321 388 KADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSS 467 (1100)
Q Consensus 388 ~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1100)
T Consensus 187 -------------------------------------------------------------------------------- 186 (313)
T KOG1407|consen 187 -------------------------------------------------------------------------------- 186 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeC
Q 001321 468 HTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1100)
Q Consensus 468 ~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd 547 (1100)
.|+...-|+.|+|+|+++|+|+.|..+-+||+..-.|. ..+..+..+|..|+|+.|
T Consensus 187 -------------AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-----------R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 187 -------------AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-----------RCISRLDWPVRTLSFSHD 242 (313)
T ss_pred -------------cCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-----------eeeccccCceEEEEeccC
Confidence 01111123468899999999999999999999876554 345667789999999999
Q ss_pred CCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCC
Q 001321 548 NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC 624 (1100)
Q Consensus 548 ~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~d 624 (1100)
|++||+|++|-.|-|-...++.. .--..+.++-..++|+|...+||-+.+|
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~--------------------------~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDR--------------------------VWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceeeccCccceEEeEecccCCe--------------------------EEEeeccCCceeEEecCCCceeeEEecC
Confidence 99999999999998888887622 1124678899999999999999987665
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.2e-17 Score=169.99 Aligned_cols=329 Identities=14% Similarity=0.196 Sum_probs=231.3
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
...+|+..|..++....+..+.+++.|.+..+|.++++.++..+ .|.+.|.|+.|++.+.++++++.|++-+||.+...
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~ 222 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN 222 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence 45689999999999888888999999999999999999988888 88899999999999999999999999999997631
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE--EcCC-EEEEEEccCCEEEEEecCCccccccc
Q 001321 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA--YENA-LVILWDVSEAQIIFVGGGKDLQLKDG 226 (1100)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~--~~dg-~V~lwdl~~~~~~~~~~~~~~~~~~~ 226 (1100)
+.+|....... .+. ...+.+ .+...+..-+ ..|| +|++ -+..+.+|
T Consensus 223 --------~~vP~~~a~~~--hSs--EeE~e~-----sDe~~~d~d~~~~sD~~tiRv------Pl~~ltgH-------- 271 (481)
T KOG0300|consen 223 --------WEVPSNNAPSD--HSS--EEEEEH-----SDEHNRDTDSSEKSDGHTIRV------PLMRLTGH-------- 271 (481)
T ss_pred --------CcCCCCCCCCC--CCc--hhhhhc-----ccccccccccccccCCceeee------eeeeeecc--------
Confidence 11221110000 000 000000 0011111111 1122 2221 11234455
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1100)
...|.+.-|. ..|+.+++++-|.+-.+||+++++....
T Consensus 272 ----------------------~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~------------------- 309 (481)
T KOG0300|consen 272 ----------------------RAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNI------------------- 309 (481)
T ss_pred ----------------------ccceEehhhh-cCcceeeeeeccccceeeeeccCceecc-------------------
Confidence 7778888898 8899999999999999999987621110
Q ss_pred CcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCC
Q 001321 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1100)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1100)
T Consensus 310 -------------------------------------------------------------------------------- 309 (481)
T KOG0300|consen 310 -------------------------------------------------------------------------------- 309 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccC
Q 001321 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1100)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1100)
T Consensus 310 -------------------------------------------------------------------------------- 309 (481)
T KOG0300|consen 310 -------------------------------------------------------------------------------- 309 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee
Q 001321 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1100)
Q Consensus 467 ~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp 546 (1100)
++ ||..+..-+..+|..++++|.+.|-+.|+||+.. .+.... -+.+|...|+++.|..
T Consensus 310 -----------Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~sV~---------VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 310 -----------LT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQSVA---------VFQGHTDTVTSVVFNT 367 (481)
T ss_pred -----------cc-CcchhccccccCCcceEEEEeccCceeEeccchh-hcceee---------eecccccceeEEEEec
Confidence 00 0111111114567788999999999999999983 322111 2569999999999998
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCce
Q 001321 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR 626 (1100)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~ 626 (1100)
+.+ +++|++|.+|+||++..... ++.. ....+++.-++++..+..+|.--++..
T Consensus 368 dd~-vVSgSDDrTvKvWdLrNMRs------------------------plAT-IRtdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 368 DDR-VVSGSDDRTVKVWDLRNMRS------------------------PLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred CCc-eeecCCCceEEEeeeccccC------------------------ccee-eecCCccceeEeecCCceEEeccCCce
Confidence 764 67899999999999987532 2332 356788999999999989999999999
Q ss_pred EEEEecCCceEEEEee-cCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 627 VAVLDMNLLSVLFFTD-DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 627 V~vwD~~~~~~~~~~~-~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
|++||+.+..+--.-. ...+|..-|.|.+|.....- .-|++++-|..+.-|+..
T Consensus 422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~--------------------cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA--------------------CNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEEEecCCCccccCCcccccccceeeeeeeccccCcc--------------------cccccccccceeeeeEec
Confidence 9999999877651111 11269999999999943321 338999999999999943
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.1e-18 Score=180.51 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=122.9
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
.|+.+++.|+..+.+|.|.+||+....+...++-.+. ..-+.++.++++.|||+|+..|.|.||+..+..
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~----------v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS----------VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc----------cceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 5778888999999999999999998876643332211 234567777999999999999999999987642
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeC--CceEEEEecCCceEEEEeecCCCC
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE--CGRVAVLDMNLLSVLFFTDDISGS 647 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~--dG~V~vwD~~~~~~~~~~~~~~~~ 647 (1100)
. ...|+++..+......|++|+|+||++.||++|. +..+++..+.+.++--........
T Consensus 421 ~-------------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~ 481 (514)
T KOG2055|consen 421 A-------------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK 481 (514)
T ss_pred c-------------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence 2 2335577777888999999999999999998874 578999999887765222222235
Q ss_pred CCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 648 ~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
-+.|+||+|++.+ .+|++|.++|.|.+|+
T Consensus 482 vg~vtc~aFSP~s----------------------G~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 482 VGHVTCMAFSPNS----------------------GYLAVGNEAGRVHLFK 510 (514)
T ss_pred ccceEEEEecCCC----------------------ceEEeecCCCceeeEe
Confidence 5789999999655 4499999999999998
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.79 E-value=1.3e-17 Score=186.69 Aligned_cols=277 Identities=18% Similarity=0.288 Sum_probs=209.8
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee---ecCCCeEE-EEEec-CCCEEEEEeCCCcEEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITA-FSVIS-GSHFMYIGDENGLMSVIK 145 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~-~~~s~-~~~~l~~G~~dG~V~Iw~ 145 (1100)
.+.+|...|+.+++.++ ..+++++.|++++||+-..++.+... .+.+-|.+ +++.+ +...+++|+.|++|.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 46789999999998877 68999999999999999888887644 34455555 66665 344599999999999998
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~ 225 (1100)
.+.. ... |.+.+|. ..|+++.- ..+++ +++|+.|.++++|-..+-.- ...+|
T Consensus 88 ~~~~--~P~---~~LkgH~------------snVC~ls~--~~~~~-~iSgSWD~TakvW~~~~l~~-~l~gH------- 139 (745)
T KOG0301|consen 88 LSQA--EPL---YTLKGHK------------SNVCSLSI--GEDGT-LISGSWDSTAKVWRIGELVY-SLQGH------- 139 (745)
T ss_pred cCCC--Cch---hhhhccc------------cceeeeec--CCcCc-eEecccccceEEecchhhhc-ccCCc-------
Confidence 7742 222 5688887 88999987 44677 99999999999998654321 24455
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
+..|.++..+ |++ .++||+.|.+|++|...+. .+ .
T Consensus 140 -----------------------~asVWAv~~l-~e~-~~vTgsaDKtIklWk~~~~--------------l~--t---- 174 (745)
T KOG0301|consen 140 -----------------------TASVWAVASL-PEN-TYVTGSADKTIKLWKGGTL--------------LK--T---- 174 (745)
T ss_pred -----------------------chheeeeeec-CCC-cEEeccCcceeeeccCCch--------------hh--h----
Confidence 7789998877 777 7999999999999975321 00 0
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
...|-.| +..++.++
T Consensus 175 -----f~gHtD~-----------------------------------------------------VRgL~vl~------- 189 (745)
T KOG0301|consen 175 -----FSGHTDC-----------------------------------------------------VRGLAVLD------- 189 (745)
T ss_pred -----hccchhh-----------------------------------------------------eeeeEEec-------
Confidence 0000000 00111111
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
T Consensus 190 -------------------------------------------------------------------------------- 189 (745)
T KOG0301|consen 190 -------------------------------------------------------------------------------- 189 (745)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
...+++++.||.||+|++....+. ...+|..-|.+++..
T Consensus 190 -----------------------------~~~flScsNDg~Ir~w~~~ge~l~------------~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 190 -----------------------------DSHFLSCSNDGSIRLWDLDGEVLL------------EMHGHTNFVYSISMA 228 (745)
T ss_pred -----------------------------CCCeEeecCCceEEEEeccCceee------------eeeccceEEEEEEec
Confidence 114788999999999999665543 467899999999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCc
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG 625 (1100)
.+++.++++++|++++||+-.. |...+..+...|+++.+-++|. +++|+.||
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~e---------------------------~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG 280 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKDE---------------------------CVQVITLPTTSIWSAKVLLNGD-IVVGGSDG 280 (745)
T ss_pred CCCCeEEEecCCceEEEeecCc---------------------------eEEEEecCccceEEEEEeeCCC-EEEeccCc
Confidence 9999999999999999999874 5666666777999999999996 89999999
Q ss_pred eEEEEecCCc
Q 001321 626 RVAVLDMNLL 635 (1100)
Q Consensus 626 ~V~vwD~~~~ 635 (1100)
.|+||..+..
T Consensus 281 ~VrVfT~~k~ 290 (745)
T KOG0301|consen 281 RVRVFTVDKD 290 (745)
T ss_pred eEEEEEeccc
Confidence 9999987743
No 123
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=1.9e-16 Score=177.52 Aligned_cols=185 Identities=18% Similarity=0.247 Sum_probs=133.8
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEE-EEECCCcEEEEEcCCCceeeeeecCCCeEEEEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Ll-s~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~ 125 (1100)
+.++++++.||.|++|+....+.+....+...+..++|+|++.+++ +++.++.|.+||..+++.+..+.....+..+++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 4678999999999999996655544444444467899999998874 556789999999999988776655555778999
Q ss_pred ecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC-EEE
Q 001321 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVI 203 (1100)
Q Consensus 126 s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg-~V~ 203 (1100)
+|+++.+++++ .++.|++|++.. ..... .++.. ..+.+++|+| +|..++++..++ .+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~---~~~~~-------------~~~~~~~~~~--dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET--RKVLA---EIPVG-------------VEPEGMAVSP--DGKIVVNTSETTNMAH 140 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CeEEe---EeeCC-------------CCcceEEECC--CCCEEEEEecCCCeEE
Confidence 99999887664 588999998764 22221 12211 3467899988 788788887765 566
Q ss_pred EEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE-EcCCcEEEEecCCC
Q 001321 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1100)
Q Consensus 204 lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg-~~DG~I~lWd~~~~ 282 (1100)
+||..+++....... ...+.+++|. |+|.+++.+ ..+|.|.+||..++
T Consensus 141 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV------------------------------DQRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEeCCCCeEEEEEEc------------------------------CCCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcc
Confidence 789888766543211 2234567875 999988655 46999999998754
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.9e-16 Score=150.67 Aligned_cols=206 Identities=13% Similarity=0.161 Sum_probs=152.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc----------------eEEEeCCCCCCEEEEEEEeCCCEEEEEECC
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----------------EGLLISPSQLPYKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~----------------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d 97 (1100)
-...|.+++|.|.|.+-|+|+.....||--.+.. .+.....|++.|-|.+|+|+|..+++++.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 3557899999999999999999988888643211 122345689999999999999999999999
Q ss_pred CcEEEEEcCCC------ceeeeeecCCCeEEEEEecC----CCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 98 NEIQVWSLESR------SLACCLKWESNITAFSVISG----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 98 ~~I~vWd~~s~------~~l~~~~~~~~Vt~~~~s~~----~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
.+|++.-.... .-+..--|.+.|..++|..+ +..|+++ ..|..+|+..|-.+++-.+. +.+|.
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~g~~~~a---~sght--- 183 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGRGQGFHA---LSGHT--- 183 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCCCCccee---ecCCc---
Confidence 99999765432 22333357799999999744 2344444 44556777777666665433 66666
Q ss_pred ccCCCCCCCCCeEEE-EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCC
Q 001321 168 KAGFPLLSHQPVVGV-LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv-~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~ 246 (1100)
+.|.++ .| +|-++++|+.|.+|++||++-...+...+. .. ....
T Consensus 184 ---------ghilalysw----n~~m~~sgsqdktirfwdlrv~~~v~~l~~-------~~---------------~~~g 228 (350)
T KOG0641|consen 184 ---------GHILALYSW----NGAMFASGSQDKTIRFWDLRVNSCVNTLDN-------DF---------------HDGG 228 (350)
T ss_pred ---------ccEEEEEEe----cCcEEEccCCCceEEEEeeeccceeeeccC-------cc---------------cCCC
Confidence 777776 45 577799999999999999988776665543 11 1111
Q ss_pred CCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 247 PEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 247 ~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+...|.++|- .|.|+.|++|..|.+..+||+..+
T Consensus 229 lessavaav~v-dpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 229 LESSAVAAVAV-DPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred cccceeEEEEE-CCCcceeeeccCCCceEEEEeeCC
Confidence 23678999996 499999999999999999999755
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.9e-17 Score=177.95 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=150.2
Q ss_pred CEEEEEECC-CeEEEEeCCCceE-EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEE
Q 001321 48 RLLAIATLD-GRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFS 124 (1100)
Q Consensus 48 ~lLA~gs~d-G~I~vw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~ 124 (1100)
.+++++... ..|.+|....... ....--.++|.+|+-+|+|.+|+.++-.+.|.+|.+.+|.++..+ .|-..|||+.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 355555543 6899999854433 223345678999999999999999989999999999999999887 6778899999
Q ss_pred EecCCCEEEEEeCCCcEEEEEEec----CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC
Q 001321 125 VISGSHFMYIGDENGLMSVIKYDA----DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 125 ~s~~~~~l~~G~~dG~V~Iw~~d~----~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg 200 (1100)
|+-++.++++|+.||.|.+|.+-. ++..-...-+.+..|. -+|+.+...+.....++++++.|.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht------------lsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT------------LSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc------------ceeEEEEecCCCccceEEEecCCc
Confidence 999999999999999999998643 1111111113444454 789999887654556799999999
Q ss_pred EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 201 ~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
++++||+..+.++..... +..+.+++- .|.+..+++|.++|.|.+-++.
T Consensus 199 t~k~wdlS~g~LLlti~f------------------------------p~si~av~l-Dpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITF------------------------------PSSIKAVAL-DPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eEEEEEeccceeeEEEec------------------------------CCcceeEEE-cccccEEEecCCcceEEeeehh
Confidence 999999999988776544 777888885 5999999999999999887664
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.6e-17 Score=165.47 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=118.9
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|..-|+|+.|++.|++||+++.|++|+||+++.++++.. +..++ +.+.+.|..|.|-+...|..++
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~-----~Ts~W--------rah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS-----CTSSW--------RAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceE-----EeeeE--------EecCCcEEEEEecCccccceEE
Confidence 3456699999999999999999999999999877776655 44444 2233899999997767899999
Q ss_pred EEEcCCEEEEEEccCCEEEEEecCC-cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC--CCEEEEEEcC
Q 001321 195 IAYENALVILWDVSEAQIIFVGGGK-DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYID 271 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd--g~~l~sg~~D 271 (1100)
+++.|++++||.-..... ..|. .+.....+. +.+..|+.++|. |. |-.|++++.|
T Consensus 78 ~cS~Drtv~iWEE~~~~~---~~~~~~Wv~~ttl~------------------DsrssV~DV~Fa-P~hlGLklA~~~aD 135 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSE---EAHGRRWVRRTTLV------------------DSRSSVTDVKFA-PKHLGLKLAAASAD 135 (361)
T ss_pred EEecCCceeeeeeccccc---ccccceeEEEEEee------------------cCCcceeEEEec-chhcceEEEEeccC
Confidence 999999999998642111 1110 011111111 227889999975 74 6789999999
Q ss_pred CcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCC
Q 001321 272 GDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDE 336 (1100)
Q Consensus 272 G~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~ 336 (1100)
|.||+|+..+.-......-. ..+..+....+....+...+.|+. ......+|+.|.++
T Consensus 136 G~lRIYEA~dp~nLs~W~Lq--~Ei~~~~~pp~~~~~~~~CvsWn~-----sr~~~p~iAvgs~e 193 (361)
T KOG2445|consen 136 GILRIYEAPDPMNLSQWTLQ--HEIQNVIDPPGKNKQPCFCVSWNP-----SRMHEPLIAVGSDE 193 (361)
T ss_pred cEEEEEecCCccccccchhh--hhhhhccCCcccccCcceEEeecc-----ccccCceEEEEccc
Confidence 99999998765322221100 000001112333455778888884 23345667777655
No 127
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=3.3e-17 Score=173.97 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=170.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC-CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
-||.-+|+.+.|+|+...+++++.|-.|+||.. ...+......|..+|+.+...|.|.||++++.|++..+-|++++..
T Consensus 258 ~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~ 337 (506)
T KOG0289|consen 258 KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ 337 (506)
T ss_pred cCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE
Confidence 488889999999999999999999999999998 4556778889999999999999999999999999999999999999
Q ss_pred eeeeecCC---CeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 111 ACCLKWES---NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 111 l~~~~~~~---~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
++...++. .+++.+|+||+..+.+|..||.|+||++..... . .++|+|. ++|.+|+| .
T Consensus 338 lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~-~----a~Fpght------------~~vk~i~F--s 398 (506)
T KOG0289|consen 338 LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN-V----AKFPGHT------------GPVKAISF--S 398 (506)
T ss_pred EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc-c----ccCCCCC------------CceeEEEe--c
Confidence 98887753 599999999999999999999999999986442 2 3488887 99999999 6
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
++|-+|++++.|+.|++||++.-+....+.- .+...|.+++|. +.|.+|+.
T Consensus 399 ENGY~Lat~add~~V~lwDLRKl~n~kt~~l----------------------------~~~~~v~s~~fD-~SGt~L~~ 449 (506)
T KOG0289|consen 399 ENGYWLATAADDGSVKLWDLRKLKNFKTIQL----------------------------DEKKEVNSLSFD-QSGTYLGI 449 (506)
T ss_pred cCceEEEEEecCCeEEEEEehhhcccceeec----------------------------cccccceeEEEc-CCCCeEEe
Confidence 6899999999999999999987764433311 114578999986 99999999
Q ss_pred EEcCCcEEEEe
Q 001321 268 GYIDGDILLWN 278 (1100)
Q Consensus 268 g~~DG~I~lWd 278 (1100)
++.|=.|.+++
T Consensus 450 ~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 450 AGSDLQVYICK 460 (506)
T ss_pred ecceeEEEEEe
Confidence 97665555544
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.7e-17 Score=185.23 Aligned_cols=213 Identities=15% Similarity=0.284 Sum_probs=166.5
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
.+...+|+|...-+.++|+|+|.+|.+++.||.|++|+.... +.- .+.-++..|.+++-. ..+|++++.+++|.++
T Consensus 4 ~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 4 TRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRY 81 (933)
T ss_pred ccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEe
Confidence 356688999999999999999999999999999999987443 221 122266677776654 4479999999999999
Q ss_pred EcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 104 d~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
.+.+++.-..+ .+.-++++++|+.+|.+++.|++|-.|++.+.+....... +.+|. ++|.+|
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~-----lrgh~------------apVl~l 144 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV-----LRGHD------------APVLQL 144 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee-----ecccC------------Cceeee
Confidence 99988765443 5667899999999999999999999999998775433333 66666 999999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCC-CCceEEEEEecCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE-EKEISALCWASSS 261 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~-~~~V~sl~w~spd 261 (1100)
.|+| .+++|+++.-||.|.+||+.++.+...... -.. ..... ...++.++|+ |+
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~---------------v~k-------~n~~~~s~i~~~~aW~-Pk 199 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTG---------------VDK-------DNEFILSRICTRLAWH-PK 199 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhccc---------------CCc-------cccccccceeeeeeec-CC
Confidence 9998 788899999999999999999876544322 000 01111 3445668896 99
Q ss_pred CCEEEEEEcCCcEEEEecCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|..++..+.|+.|.+++..+.
T Consensus 200 ~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 200 GGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred CCeEEeeccCCeEEEEccCCc
Confidence 889999999999999987643
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=9.9e-16 Score=171.75 Aligned_cols=141 Identities=15% Similarity=0.209 Sum_probs=102.4
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~-~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
..+++.+.|+.|.+||+.+++.+..+.....+.+++|+|++..++ ++..++.|++|+.+. ++... .++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~---~~~~~---- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIG---TLPSG---- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC--CcEEE---eccCC----
Confidence 457788899999999999998888887666688999999999874 567789999988764 33332 13221
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEE-EcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~-~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~ 246 (1100)
..+..+.|+| +++.++++ ..++.|.+||+.+.+.+..+.+
T Consensus 73 ---------~~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---------------------------- 113 (300)
T TIGR03866 73 ---------PDPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV---------------------------- 113 (300)
T ss_pred ---------CCccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----------------------------
Confidence 2356788987 56656555 4589999999998876654432
Q ss_pred CCCCceEEEEEecCCCCEEEEEEcCCc-EEEEecC
Q 001321 247 PEEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 280 (1100)
Q Consensus 247 ~~~~~V~sl~w~spdg~~l~sg~~DG~-I~lWd~~ 280 (1100)
...+.+++|. |+|..++++..++. +.+||..
T Consensus 114 --~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 114 --GVEPEGMAVS-PDGKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred --CCCcceEEEC-CCCCEEEEEecCCCeEEEEeCC
Confidence 2235678875 99999998887654 5556654
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-17 Score=162.07 Aligned_cols=270 Identities=18% Similarity=0.244 Sum_probs=190.1
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCC-eeeeeceeecccccccccCCCCCCCCCeEEEEe-ccCCCCCE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLP-HPNSSGNR 192 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f-~P~~~g~~ 192 (1100)
.|+..|.....+..+.+|+++++|++|+|+....... ++. ..+.+|. +||..++| ||. .|+.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll---~~L~Gh~------------GPVwqv~wahPk-~G~i 72 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL---AELTGHS------------GPVWKVAWAHPK-FGTI 72 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee---eEecCCC------------CCeeEEeecccc-cCcE
Confidence 5777888888999999999999999999999887554 333 4588887 99999999 554 7999
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC--CCEEEEEEc
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGYI 270 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd--g~~l~sg~~ 270 (1100)
|++++.||.|.||.-.+++-.+...| ..+ ...|.+++|. |. |..|+++++
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~-------~~h--------------------~~SVNsV~wa-pheygl~LacasS 124 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEH-------AAH--------------------SASVNSVAWA-PHEYGLLLACASS 124 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhh-------hhh--------------------cccceeeccc-ccccceEEEEeeC
Confidence 99999999999999988854444333 233 8889999997 65 568999999
Q ss_pred CCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCC
Q 001321 271 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 350 (1100)
Q Consensus 271 DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~ 350 (1100)
||.|.+.+..+...-. ..++. ..|
T Consensus 125 DG~vsvl~~~~~g~w~---------t~ki~-----------~aH------------------------------------ 148 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWT---------TSKIV-----------FAH------------------------------------ 148 (299)
T ss_pred CCcEEEEEEcCCCCcc---------chhhh-----------hcc------------------------------------
Confidence 9999999876431000 00000 000
Q ss_pred ccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccc
Q 001321 351 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1100)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 430 (1100)
..-+..+...|..- +|.++-
T Consensus 149 -----------------~~GvnsVswapa~~---------------~g~~~~---------------------------- 168 (299)
T KOG1332|consen 149 -----------------EIGVNSVSWAPASA---------------PGSLVD---------------------------- 168 (299)
T ss_pred -----------------ccccceeeecCcCC---------------Cccccc----------------------------
Confidence 00011111111100 000000
Q ss_pred ccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEe
Q 001321 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 510 (1100)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriW 510 (1100)
.+ ....-+.|++|+.|..|+||
T Consensus 169 ------------------------------------------------~~----------~~~~~krlvSgGcDn~VkiW 190 (299)
T KOG1332|consen 169 ------------------------------------------------QG----------PAAKVKRLVSGGCDNLVKIW 190 (299)
T ss_pred ------------------------------------------------cC----------cccccceeeccCCccceeee
Confidence 00 00002368999999999999
Q ss_pred eCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC----CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceee
Q 001321 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1100)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~----~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1100)
+...+. ..++ ..+.+|..-|+.++|+|.- .++|++++||+|.||..+....+
T Consensus 191 ~~~~~~----w~~e-----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~--------------- 246 (299)
T KOG1332|consen 191 KFDSDS----WKLE-----RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP--------------- 246 (299)
T ss_pred ecCCcc----hhhh-----hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---------------
Confidence 998864 2222 3378999999999999975 47999999999999998743211
Q ss_pred ccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 587 i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
.-...+...+.++..+.||..|++||+++.|..|.+|--.
T Consensus 247 -------wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 -------WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -------ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1123344567889999999999999999999999999654
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.7e-17 Score=162.54 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=163.7
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc----eEEEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEE
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI----EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~----~~~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~v 102 (1100)
....+|...|.....+.-|++||+++.|+.|+||...+. ....+.+|.+||..++|.. -|.+|+|++.|+.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 344567888888899999999999999999999998332 3446789999999999977 7899999999999999
Q ss_pred EEcCCCceeeee---ecCCCeEEEEEecCC--CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 103 WSLESRSLACCL---KWESNITAFSVISGS--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 103 Wd~~s~~~l~~~---~~~~~Vt~~~~s~~~--~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
|.-+.++-...+ .|.+.|++++|.|.. -.|+++++||.|+|+.++.+.+-... -....|. -
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~--ki~~aH~------------~ 150 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTS--KIVFAHE------------I 150 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccch--hhhhccc------------c
Confidence 999998544333 677899999999874 68999999999999999986333221 1123333 6
Q ss_pred CeEEEEeccCCC-C-----------CEEEEEEcCCEEEEEEccCCEE---EEEecCCcccccccccCCCCCCCCccccCC
Q 001321 178 PVVGVLPHPNSS-G-----------NRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1100)
Q Consensus 178 ~V~sv~f~P~~~-g-----------~~ll~~~~dg~V~lwdl~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~ 242 (1100)
.|.++.|.|... | ++|++|+-|..|+||...++.- ..+.+|
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H------------------------ 206 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH------------------------ 206 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc------------------------
Confidence 688898888522 2 5799999999999999998732 124455
Q ss_pred CCCCCCCCceEEEEEecCCC----CEEEEEEcCCcEEEEecC
Q 001321 243 SEHQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 243 ~~~~~~~~~V~sl~w~spdg----~~l~sg~~DG~I~lWd~~ 280 (1100)
..-|..++|. |.- ..|++++.||.+.+|...
T Consensus 207 ------~dwVRDVAwa-P~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 207 ------KDWVRDVAWA-PSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ------chhhhhhhhc-cccCCCceeeEEecCCCcEEEEEec
Confidence 6667778886 653 579999999999999876
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.7e-17 Score=186.20 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=116.2
Q ss_pred CcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcce
Q 001321 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1100)
Q Consensus 495 ~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1100)
+..++++++.|.+++||+..+..- ...+..|.++|.|+.|+|++.+||+|++|++|+||++.+....
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~----------~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~--- 255 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRC----------EKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK--- 255 (839)
T ss_pred CceEEEecCCceEEEeeccCchhH----------HHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc---
Confidence 347899999999999999876521 0337799999999999999999999999999999999875321
Q ss_pred eeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC-CEEEEEe--CCceEEEEecCCceEEEEeecCCCCCCCe
Q 001321 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGF--ECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1100)
Q Consensus 575 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-~~LavGs--~dG~V~vwD~~~~~~~~~~~~~~~~~~~V 651 (1100)
... -..--.+|..|+|-|.. .+||+.+ .|-.|+|||++.|.+-|. .+..|...|
T Consensus 256 --------------------~~~-tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~--t~~eH~~~v 312 (839)
T KOG0269|consen 256 --------------------PKH-TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYA--TFLEHTDSV 312 (839)
T ss_pred --------------------cee-EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccce--eeeccCccc
Confidence 111 12345789999999976 4577664 578999999999877643 334699999
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 652 ~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
+.++|.. .+..+|+++++||.|+.--.
T Consensus 313 t~i~W~~---------------------~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 313 TGIAWDS---------------------GDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred cceeccC---------------------CCceeeEeecCccHHHHhhh
Confidence 9999983 23578999999999987653
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.1e-16 Score=176.07 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=113.7
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
.|+|...+++.+++ ..|||||+....+. ..+.....-|..|+.+|.|..|+.|+.|+.++.||++-++
T Consensus 573 ~FHPs~p~lfVaTq-~~vRiYdL~kqelv-----------KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 573 KFHPSKPYLFVATQ-RSVRIYDLSKQELV-----------KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred EecCCCceEEEEec-cceEEEehhHHHHH-----------HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 34455545555553 57999999876644 1222333468999999999999999999999999998763
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe------cCCceEEEEeec
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD------MNLLSVLFFTDD 643 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD------~~~~~~~~~~~~ 643 (1100)
. ++..+..|...|++++|++.-.++|+|++||++.|+. +-..-++.-...
T Consensus 641 k------------------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 641 K------------------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred c------------------------hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 2 4566789999999999999999999999999999983 433334444445
Q ss_pred CCCCCCC----eEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEE
Q 001321 644 ISGSSSP----IISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1100)
Q Consensus 644 ~~~~~~~----V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~ 697 (1100)
+.+|... |....|.+. ...||+++.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~----------------------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPR----------------------QPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCC----------------------CceEEecCCCceEEee
Confidence 5566554 788888743 4669999999999998
No 134
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.6e-17 Score=172.65 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=114.6
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1100)
+|+++..|++|-+||+.........+ +. ..-..|+|+|.+-.+++|++|-.++.||+..-..
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi---------~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~------ 263 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVI---------LT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR------ 263 (433)
T ss_pred heeeeccCCceEEEecccCCccceee---------ee---ccccceecCccccceeeccccccceehhhhhhcc------
Confidence 68888899999999998776432222 11 2456789999888899999999999999876422
Q ss_pred eccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEE
Q 001321 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTW 656 (1100)
Q Consensus 577 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~f 656 (1100)
++.++..|-++|.+++|||-|+-+++|+-|.+|+||.++.+...-..+. .--..|.++.|
T Consensus 264 ------------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~ 323 (433)
T KOG0268|consen 264 ------------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKY 323 (433)
T ss_pred ------------------cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEE
Confidence 4667789999999999999999999999999999999987644311111 13457999999
Q ss_pred eecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCC
Q 001321 657 TEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1100)
Q Consensus 657 s~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g 702 (1100)
+.+... +++|++|+.|++|...-.
T Consensus 324 S~Dsky----------------------i~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 324 SMDSKY----------------------IISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eccccE----------------------EEecCCCcceeeeecchh
Confidence 966544 999999999999995543
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=2.6e-16 Score=174.59 Aligned_cols=232 Identities=16% Similarity=0.226 Sum_probs=158.9
Q ss_pred eeeecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEeCCCce-------EEEeCCCCCCEEEEEEEeCCCEEEEEECC
Q 001321 28 IAVHYGIPATASILAFDH---IQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp---~~~lLA~gs~dG~I~vw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d 97 (1100)
...+.|++-++-+..|++ ...+||++.+||.|.+||..... +.....|...|-.+.|.|...+||+++.|
T Consensus 42 s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 42 SYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 345566666775666665 34689999999999999974332 34567899999999999988899999999
Q ss_pred CcEEEEEcCCCceeee---eecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeee----e---ceee-ccccc
Q 001321 98 NEIQVWSLESRSLACC---LKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQ----L---PYNI-SADAL 165 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~---~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~----~---~~~i-~~~~~ 165 (1100)
.++++||+.+.++... +.|.+.|.+++|.+... .+++|+.||.|.|||+....-.... . .++- |.+..
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 9999999999887754 48999999999999875 7789999999999998753200000 0 0000 00100
Q ss_pred ccccCCC--CCC----CCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCcc
Q 001321 166 SEKAGFP--LLS----HQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 166 ~~~~~~~--~~~----~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
......+ ... .+.|+.+.| .|+.+ |++++. |+.|+|||++........+. ...
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~f--kDe~t-laSaga~D~~iKVWDLRk~~~~~r~ep----------------~~~- 261 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLF--KDEST-LASAGAADSTIKVWDLRKNYTAYRQEP----------------RGS- 261 (720)
T ss_pred hhhccccccccccCceeeeeEEEEE--eccce-eeeccCCCcceEEEeecccccccccCC----------------Ccc-
Confidence 0011111 111 245777888 54565 888777 99999999998754332211 000
Q ss_pred ccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
+.+.....+.-.+++++-. ..|.+++..|.|++|.+||+.+
T Consensus 262 -~~~~t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 262 -DKYPTHSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred -cCccCcccceeeeEEEEec-CCCCeEEEEecCCcEEEEeccc
Confidence 0011112225567888854 7789999999999999999864
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.9e-16 Score=158.92 Aligned_cols=198 Identities=16% Similarity=0.245 Sum_probs=145.0
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE--------EEeCCCCCCEEEEEEEeCCC-EEEEEECCCc
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--------LLISPSQLPYKNLEFLQNQG-FLISITNDNE 99 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~--------~~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~ 99 (1100)
...-||...|++++|+.||+.||+++.|+.||||+.+..+. -+..+| -+.++|+||-. .++++-..++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCCE
Confidence 34569999999999999999999999999999999854221 122333 57889999864 5566667888
Q ss_pred EEEEEcCCCc---ee-eee---------ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001321 100 IQVWSLESRS---LA-CCL---------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1100)
Q Consensus 100 I~vWd~~s~~---~l-~~~---------~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~ 166 (1100)
+++|-+..++ .. +.. .|...|..+-....+.++++++.+..|.+|++. |++.+. +..+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~---idtnq-- 228 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQS---IDTNQ-- 228 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---Cceeee---ecccc--
Confidence 9999875542 11 111 122356666677788999999999999999987 566543 44433
Q ss_pred cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC---------EEEEEecCCcccccccccCCCCCCCCc
Q 001321 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA---------QIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1100)
Q Consensus 167 ~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~---------~~~~~~~~~~~~~~~~l~~~~~g~~~~ 237 (1100)
..-...+.+| +|.+++++.-.--|++|.+--+ ++..+.||
T Consensus 229 ----------~~n~~aavSP--~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH------------------- 277 (420)
T KOG2096|consen 229 ----------SSNYDAAVSP--DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH------------------- 277 (420)
T ss_pred ----------ccccceeeCC--CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-------------------
Confidence 2233445666 7887887777778899986422 12334455
Q ss_pred cccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 238 ~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
...|+++|| +++...+++.+.||++++||..
T Consensus 278 -----------~saV~~~aF-sn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 278 -----------QSAVLAAAF-SNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred -----------hhheeeeee-CCCcceeEEEecCCcEEEeecc
Confidence 788999997 5999999999999999999974
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=4.8e-15 Score=163.41 Aligned_cols=127 Identities=15% Similarity=0.238 Sum_probs=98.5
Q ss_pred eeeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCC-CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 112 CCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 112 ~~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
....|...|+.+.|+|-. .+|++++.|..|+||.+...- ..+......+.+. .-.|.++.|||..+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~------------~~~vE~l~fHpTaD 141 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGG------------NVIVECLRFHPTAD 141 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCC------------ceEEEEeecccCcC
Confidence 344788899999999864 578999999999999988321 1221111122221 26799999999988
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
| |+.....|.|.|||+.+++.+ ...+| ...|+++.|. .||..+++.
T Consensus 142 g--il~s~a~g~v~i~D~stqk~~~el~~h------------------------------~d~vQSa~Ws-eDG~llats 188 (1012)
T KOG1445|consen 142 G--ILASGAHGSVYITDISTQKTAVELSGH------------------------------TDKVQSADWS-EDGKLLATS 188 (1012)
T ss_pred c--eEEeccCceEEEEEcccCceeecccCC------------------------------chhhhccccc-cCCceEeee
Confidence 8 778888899999999998754 45556 7789999996 999999999
Q ss_pred EcCCcEEEEecCCCC
Q 001321 269 YIDGDILLWNTSTTA 283 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~~ 283 (1100)
|.|..|+++|....-
T Consensus 189 cKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 189 CKDKQIRIFDPRASM 203 (1012)
T ss_pred cCCcceEEeCCccCC
Confidence 999999999987653
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=9.9e-17 Score=172.50 Aligned_cols=291 Identities=17% Similarity=0.192 Sum_probs=210.9
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.+.++.|..-|.+++++...+++++|+..+ |+||++.....+... -.++. ..+...|.++..+| +
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k~Pv--sqLdc----------l~rdnyiRSckL~p--d 476 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNKSPV--SQLDC----------LNRDNYIRSCKLLP--D 476 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCCCcc--ccccc----------cCcccceeeeEecC--C
Confidence 345667888899999999999999998766 899999864333221 01111 11236788999977 7
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
|..|++|++-.+|.|||+......... ++. .+ ......++ .+||.+..++++
T Consensus 477 grtLivGGeastlsiWDLAapTprika---------elt-------ss-----------apaCyALa-~spDakvcFscc 528 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKA---------ELT-------SS-----------APACYALA-ISPDAKVCFSCC 528 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhh---------hcC-------Cc-----------chhhhhhh-cCCccceeeeec
Confidence 888999999999999999875432111 111 00 12233455 369999999999
Q ss_pred cCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001321 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1100)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~ 349 (1100)
.||.|++||+.+..... .+
T Consensus 529 sdGnI~vwDLhnq~~Vr-------------------------qf------------------------------------ 547 (705)
T KOG0639|consen 529 SDGNIAVWDLHNQTLVR-------------------------QF------------------------------------ 547 (705)
T ss_pred cCCcEEEEEcccceeee-------------------------cc------------------------------------
Confidence 99999999986430000 00
Q ss_pred CccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcc
Q 001321 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1100)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~ 429 (1100)
T Consensus 548 -------------------------------------------------------------------------------- 547 (705)
T KOG0639|consen 548 -------------------------------------------------------------------------------- 547 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEE
Q 001321 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1100)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIri 509 (1100)
.||+.-..|+.+++||.-|-||+-|.+||-
T Consensus 548 --------------------------------------------------qGhtDGascIdis~dGtklWTGGlDntvRc 577 (705)
T KOG0639|consen 548 --------------------------------------------------QGHTDGASCIDISKDGTKLWTGGLDNTVRC 577 (705)
T ss_pred --------------------------------------------------cCCCCCceeEEecCCCceeecCCCccceee
Confidence 011111134467788889999999999999
Q ss_pred eeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccC
Q 001321 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1100)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~ 589 (1100)
||+..+.-. .+. .-...|-+|.+||.+.+||+|-.++.|.|-..+...
T Consensus 578 WDlregrql---------qqh---dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------------------- 625 (705)
T KOG0639|consen 578 WDLREGRQL---------QQH---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------------------- 625 (705)
T ss_pred hhhhhhhhh---------hhh---hhhhhheecccCCCccceeeecccCcEEEEecCCcc--------------------
Confidence 999877522 111 113578899999999999999999998877766531
Q ss_pred CCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCC
Q 001321 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNP 669 (1100)
Q Consensus 590 ~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~ 669 (1100)
...+..|.+-|.+|.|++.|++.++-+.|..+-.|..--+..+|+.. -++.|++.+.+.+.
T Consensus 626 ------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----E~SsVlsCDIS~dd--------- 686 (705)
T KOG0639|consen 626 ------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISFDD--------- 686 (705)
T ss_pred ------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----ccCcceeeeeccCc---------
Confidence 23456789999999999999999999999999999999888886654 37789998887443
Q ss_pred CCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 670 NHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 670 ~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
.++++|+.|..-.||.
T Consensus 687 -------------kyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 687 -------------KYIVTGSGDKKATVYE 702 (705)
T ss_pred -------------eEEEecCCCcceEEEE
Confidence 4599999888777776
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-15 Score=174.66 Aligned_cols=161 Identities=16% Similarity=0.293 Sum_probs=127.2
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceeeeee-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~~~~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
.+...|....+.|+|.++|.+|+++++|+.|++|+..+- ..-.++. +...|.+++.. ..++++|+.+++|.++.++
T Consensus 7 klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 7 KLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred cchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 345679999999999999999999999999999997655 2222222 55567777665 4499999999999999988
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCccccccc
Q 001321 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDG 226 (1100)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~ 226 (1100)
..+..-...+|+ -++..++| ..+|+.++.|++|-.|++-++..... ....+|
T Consensus 85 s~~~~~iL~Rft-----------------lp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-------- 137 (933)
T KOG1274|consen 85 SGEEDTILARFT-----------------LPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-------- 137 (933)
T ss_pred CCCccceeeeee-----------------ccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeeccc--------
Confidence 743332212233 34778888 55899999999999999999887644 556677
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
..+|.++.|+ |++.+||+...||.|++||+.++
T Consensus 138 ----------------------~apVl~l~~~-p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 138 ----------------------DAPVLQLSYD-PKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred ----------------------CCceeeeeEc-CCCCEEEEEecCceEEEEEcccc
Confidence 8899999986 99999999999999999999765
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=3.2e-16 Score=168.66 Aligned_cols=284 Identities=13% Similarity=0.197 Sum_probs=213.1
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC---cee---eeeecCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLA---CCLKWESNITAFSVISGSHFMYIGDENGLMSV 143 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~---~~l---~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~I 143 (1100)
+..+.|..-|-++..+...+++.+++ .|-|+|||+... ..+ ..+....-|.++-..|+++.|++|++-.++.|
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 35567888899999998888888887 778999999653 222 23334567999999999999999999999999
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCccc
Q 001321 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQ 222 (1100)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~ 222 (1100)
||+...+-++... ++... ....+++.+| |.+..+++++||.|+|||+....++. +.||
T Consensus 492 WDLAapTprikae---ltssa------------paCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~VrqfqGh---- 550 (705)
T KOG0639|consen 492 WDLAAPTPRIKAE---LTSSA------------PACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH---- 550 (705)
T ss_pred eeccCCCcchhhh---cCCcc------------hhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeecccCC----
Confidence 9998755444321 33222 4567788877 67778999999999999999987654 5666
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeecc
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELS 302 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~ 302 (1100)
...+.|+.- ++||..|-||+-|++||-||+..+.....
T Consensus 551 --------------------------tDGascIdi-s~dGtklWTGGlDntvRcWDlregrqlqq--------------- 588 (705)
T KOG0639|consen 551 --------------------------TDGASCIDI-SKDGTKLWTGGLDNTVRCWDLREGRQLQQ--------------- 588 (705)
T ss_pred --------------------------CCCceeEEe-cCCCceeecCCCccceeehhhhhhhhhhh---------------
Confidence 667778884 69999999999999999999976522110
Q ss_pred ccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCC
Q 001321 303 SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA 382 (1100)
Q Consensus 303 ~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~ 382 (1100)
.++++
T Consensus 589 ---------------------------------------------hdF~S------------------------------ 593 (705)
T KOG0639|consen 589 ---------------------------------------------HDFSS------------------------------ 593 (705)
T ss_pred ---------------------------------------------hhhhh------------------------------
Confidence 00000
Q ss_pred CCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhc
Q 001321 383 TVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFT 462 (1100)
Q Consensus 383 ~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1100)
+
T Consensus 594 ----------------Q--------------------------------------------------------------- 594 (705)
T KOG0639|consen 594 ----------------Q--------------------------------------------------------------- 594 (705)
T ss_pred ----------------h---------------------------------------------------------------
Confidence 0
Q ss_pred cccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEE
Q 001321 463 KLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTL 542 (1100)
Q Consensus 463 ~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l 542 (1100)
+..+..+|.+..++.|-+++.|-|-..+...- ..+.-|..-|.+|
T Consensus 595 -----------------------IfSLg~cP~~dWlavGMens~vevlh~skp~k------------yqlhlheScVLSl 639 (705)
T KOG0639|consen 595 -----------------------IFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK------------YQLHLHESCVLSL 639 (705)
T ss_pred -----------------------heecccCCCccceeeecccCcEEEEecCCccc------------eeecccccEEEEE
Confidence 00113446667788888888887777665542 2356788899999
Q ss_pred EEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe
Q 001321 543 SFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 543 afspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs 622 (1100)
-|++-|+++++.+.|..+..|..--+.. ..-..-.++|+++.+|.|.+++++|+
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyGas--------------------------iFqskE~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------------IFQSKESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred EecccCceeeecCchhhhhhccCccccc--------------------------eeeccccCcceeeeeccCceEEEecC
Confidence 9999999999999999999998755421 11134578899999999999999999
Q ss_pred CCceEEEEec
Q 001321 623 ECGRVAVLDM 632 (1100)
Q Consensus 623 ~dG~V~vwD~ 632 (1100)
.|....||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9988888865
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=1.1e-14 Score=161.45 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=145.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeC-CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~-~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
.|..+||-|||+.|.++. +.++.|||. ++.....+.+|+..|.+++|+.||.+++|+++|..|.+|+-.-.. +-.++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeeec
Confidence 688899999999998886 679999999 677777889999999999999999999999999999999965433 34568
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEE
Q 001321 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~ 195 (1100)
|...|.||.|+|-...+++.+-+.. -+|.-+. ..+.. ++.. ..|.+.+| +.+|++++.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdF-glWS~~q--K~V~K--~kss---------------~R~~~CsW--tnDGqylal 149 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDF-GLWSPEQ--KSVSK--HKSS---------------SRIICCSW--TNDGQYLAL 149 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhc-cccChhh--hhHHh--hhhh---------------eeEEEeee--cCCCcEEEE
Confidence 9999999999999999998775442 3566442 22221 1121 67999999 669999999
Q ss_pred EEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC-----CEEEEEEc
Q 001321 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-----SILAVGYI 270 (1100)
Q Consensus 196 ~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg-----~~l~sg~~ 270 (1100)
|-.+|+|.+-+-.+..-..... +|+ ...+|.++||. |+. ..+++..-
T Consensus 150 G~~nGTIsiRNk~gEek~~I~R--------------------pgg-------~Nspiwsi~~~-p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 150 GMFNGTISIRNKNGEEKVKIER--------------------PGG-------SNSPIWSICWN-PSSGEGRNDILAVADW 201 (1081)
T ss_pred eccCceEEeecCCCCcceEEeC--------------------CCC-------CCCCceEEEec-CCCCCCccceEEEEec
Confidence 9999999888654432222110 000 06789999996 643 46777777
Q ss_pred CCcEEEEecCC
Q 001321 271 DGDILLWNTST 281 (1100)
Q Consensus 271 DG~I~lWd~~~ 281 (1100)
..++.++.+..
T Consensus 202 ~qTLSFy~LsG 212 (1081)
T KOG1538|consen 202 GQTLSFYQLSG 212 (1081)
T ss_pred cceeEEEEecc
Confidence 77888887653
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=155.15 Aligned_cols=198 Identities=15% Similarity=0.160 Sum_probs=150.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceE-EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
..|+.|++-|.+||+|..||+|.|||+..... ..+..|..||++++||+||+.|++.+.|+.|.+||+..+.++..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 89999999999999999999999999965544 46778999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC-CCeEEEEeccCCCCCEEE
Q 001321 117 ESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH-QPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 117 ~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~-~~V~sv~f~P~~~g~~ll 194 (1100)
+++|+.+.|+|..+..++.+ -+..-.+.+++. ++... ++.+. .... ....+..|++ .|++++
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~----Lp~d~--------d~dln~sas~~~fdr--~g~yIi 169 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSV----LPKDD--------DGDLNSSASHGVFDR--RGKYII 169 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceee----ccCCC--------ccccccccccccccC--CCCEEE
Confidence 99999999999876444433 122223444442 12111 22111 0000 1122335755 688999
Q ss_pred EEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcE
Q 001321 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I 274 (1100)
+|...|-+.++|..+-+++..+.- . ....|..+-+ +..|++++.-+.|..|
T Consensus 170 tGtsKGkllv~~a~t~e~vas~ri---------t-------------------s~~~IK~I~~-s~~g~~liiNtsDRvI 220 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRI---------T-------------------SVQAIKQIIV-SRKGRFLIINTSDRVI 220 (405)
T ss_pred EecCcceEEEEecchheeeeeeee---------c-------------------hheeeeEEEE-eccCcEEEEecCCceE
Confidence 999999999999999887654422 1 0255667775 4899999999999999
Q ss_pred EEEecC
Q 001321 275 LLWNTS 280 (1100)
Q Consensus 275 ~lWd~~ 280 (1100)
|.|++.
T Consensus 221 R~ye~~ 226 (405)
T KOG1273|consen 221 RTYEIS 226 (405)
T ss_pred EEEehh
Confidence 999985
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=163.35 Aligned_cols=199 Identities=18% Similarity=0.238 Sum_probs=158.0
Q ss_pred CCCCeEEEEEcCCC--CEEEEEECCCeEEEEeCC-----CceEEEeCCCCCCEEEEEEEeC-CCEEEEEECCCcEEEEEc
Q 001321 34 IPATASILAFDHIQ--RLLAIATLDGRIKVIGGD-----GIEGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 34 ~~~~v~~la~sp~~--~lLA~gs~dG~I~vw~~~-----~~~~~~~~~h~~~V~~l~fs~d-~~~Lls~s~d~~I~vWd~ 105 (1100)
++++|++++|.|.- +++|+|...|.|-+||+. ...+.+..+|.+||++|.|+|. -.++++.+.||+|+.-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 57899999999965 599999999999999994 2346688899999999999994 467999999999999999
Q ss_pred CCCceeeeee---cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 106 ESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 106 ~s~~~l~~~~---~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
+....-..+. ....+..+.|+....-+++|+.-|...+|+.......... +.-|. ..|++|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~----~~lh~------------kKI~sv 328 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN----LRLHK------------KKITSV 328 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh----hhhhh------------ccccee
Confidence 9875433332 3346788899999999999998888889998864433321 22222 579999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEE-----EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-----~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
+++|.... .+++++-|++++|||++.-.. +....| ...|.+++|
T Consensus 329 ~~NP~~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H------------------------------rrsV~sAyF 377 (498)
T KOG4328|consen 329 ALNPVCPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPH------------------------------RRSVNSAYF 377 (498)
T ss_pred ecCCCCch-heeecccCcceeeeehhhhcCCCCcceecccc------------------------------cceeeeeEE
Confidence 99998544 599999999999999876321 222333 888999997
Q ss_pred ecCCCCEEEEEEcCCcEEEEecC
Q 001321 258 ASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
||.|-.|+|-|.|..|++||..
T Consensus 378 -SPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 378 -SPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred -cCCCCceEeeccCCceEEeecc
Confidence 5998889999999999999973
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2e-16 Score=179.16 Aligned_cols=203 Identities=15% Similarity=0.279 Sum_probs=154.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---ceEEEeC-CCC----CCEEEEEEEe-CCCEEEEEECCCcE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLIS-PSQ----LPYKNLEFLQ-NQGFLISITNDNEI 100 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~---~~~~~~~-~h~----~~V~~l~fs~-d~~~Lls~s~d~~I 100 (1100)
.+.-+...+++++..++-.-+++++. ..++||-... .+..... ..+ ..+..|.|.. +.++|++++..|.|
T Consensus 34 ~~~~~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i 112 (839)
T KOG0269|consen 34 MNCKLKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVI 112 (839)
T ss_pred eeeecccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcE
Confidence 44556778899999999888888874 5667776522 2222111 111 1455667764 44788999999999
Q ss_pred EEEEcCC---Cceeeee-ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 101 QVWSLES---RSLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 101 ~vWd~~s---~~~l~~~-~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.+||+.. .+++..+ .|+..|+++.|++.. .+|++|++||+|++||+.....+.. +.+..
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t-----~~~nS----------- 176 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST-----FRSNS----------- 176 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc-----ccccc-----------
Confidence 9999987 4566666 888999999999876 5788999999999999987544433 33333
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE--EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~ 253 (1100)
.+|..|.|+|.. +..+++++.+|.|.+||++.... .++..| .+.|.
T Consensus 177 -ESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH------------------------------~GpV~ 224 (839)
T KOG0269|consen 177 -ESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAH------------------------------NGPVL 224 (839)
T ss_pred -hhhhceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcc------------------------------cCceE
Confidence 789999999985 66699999999999999987643 233334 89999
Q ss_pred EEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 254 sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|+-|+ |++.+||||+.|+.|++||..+.
T Consensus 225 c~nwh-Pnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 225 CLNWH-PNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred EEeec-CCCceeeecCCCccEEEEeccCC
Confidence 99997 99999999999999999998653
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=172.95 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=116.6
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~ 156 (1100)
.|..++|-|||..|+.+. ++.+.++|...|.++.++ .|...|.|++++.+|+++++|+.|..|.||.-.. +|.+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee--
Confidence 799999999998888765 778999999999988887 8889999999999999999999999999998543 23333
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCC
Q 001321 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1100)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 236 (1100)
| .|. +.|.|+.|+|. ...+++++-+. .-+|+.....+..+..
T Consensus 90 -Y---SH~------------D~IQCMsFNP~--~h~LasCsLsd-FglWS~~qK~V~K~ks------------------- 131 (1081)
T KOG1538|consen 90 -Y---SHN------------DAIQCMSFNPI--THQLASCSLSD-FGLWSPEQKSVSKHKS------------------- 131 (1081)
T ss_pred -e---ccC------------CeeeEeecCch--HHHhhhcchhh-ccccChhhhhHHhhhh-------------------
Confidence 2 233 88999999995 43355554443 3689877655433321
Q ss_pred ccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
..++.+.+|. .||.+++.|..||+|.+-+.
T Consensus 132 ------------s~R~~~CsWt-nDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 132 ------------SSRIICCSWT-NDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred ------------heeEEEeeec-CCCcEEEEeccCceEEeecC
Confidence 5678889997 99999999999999998754
No 146
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.70 E-value=3.6e-16 Score=168.16 Aligned_cols=216 Identities=12% Similarity=0.158 Sum_probs=159.5
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCce--------EEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEE
Q 001321 33 GIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQV 102 (1100)
Q Consensus 33 G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~~--------~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~v 102 (1100)
||...-..|+|++.. ..|++|+.|+.|++||+.... .....+|...|..++|++ +...+.+++.|+.+.|
T Consensus 175 gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 175 GHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred eecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 555556669999866 578999999999999984332 236678999999999998 4467889999999999
Q ss_pred EEcCCC--ceeeee-ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 103 WSLESR--SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 103 Wd~~s~--~~l~~~-~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
||++++ +..... .|.+.|.|++|+|-+ ..||+|+.|++|.+||+.. +.+.++.+.+|. ..
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn----L~~~lh~~e~H~------------de 318 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN----LNKPLHTFEGHE------------DE 318 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh----cccCceeccCCC------------cc
Confidence 999953 333333 788999999999976 4688999999999999874 444457788887 89
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
|..|.|+|.. .+.|++++.|+.+.+||+..-.-.+.. ..+..++.+-+-....+...|....|.
T Consensus 319 v~~V~WSPh~-etvLASSg~D~rl~vWDls~ig~eq~~---------------eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 319 VFQVEWSPHN-ETVLASSGTDRRLNVWDLSRIGEEQSP---------------EDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred eEEEEeCCCC-CceeEecccCCcEEEEeccccccccCh---------------hhhccCCcceeEEecCcccccccccCC
Confidence 9999999974 456999999999999998753211100 000000000000011127779999997
Q ss_pred cCCC-CEEEEEEcCCcEEEEecCC
Q 001321 259 SSSG-SILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 259 spdg-~~l~sg~~DG~I~lWd~~~ 281 (1100)
|+. ..|+++.+|+.|.||....
T Consensus 383 -p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 -PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -CCCCeEEEEecCCceEEEeeccc
Confidence 665 5678889999999999863
No 147
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=8.5e-16 Score=159.23 Aligned_cols=190 Identities=15% Similarity=0.249 Sum_probs=147.7
Q ss_pred CEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEEEEcCCCceeeeeec----CCCe
Q 001321 48 RLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESRSLACCLKW----ESNI 120 (1100)
Q Consensus 48 ~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~----~~~V 120 (1100)
..+|++-..|.|++||......+ ....++..+..++|.. ....++++++||+|++||+++......+.+ +.+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 78999999999999999765544 5567888888999977 345688999999999999998866554432 2567
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 121 TAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 121 t~~~~s~~~~~l~~G~~----dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
.|++.+...+.+++|.+ +-.|.+||+...+..+.+. ...|. +.|++|.|||. +.++|++|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~---~eSH~------------DDVT~lrFHP~-~pnlLlSG 184 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL---NESHN------------DDVTQLRFHPS-DPNLLLSG 184 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh---hhhcc------------CcceeEEecCC-CCCeEEee
Confidence 88888888999999975 6678889987543223221 33343 89999999998 56679999
Q ss_pred EcCCEEEEEEccCCE----EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 197 YENALVILWDVSEAQ----IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 197 ~~dg~V~lwdl~~~~----~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
+.||.|.|||+.... +...+.| ...|.++.|.++.-+.|.+-+..+
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~------------------------------~sSI~~igw~~~~ykrI~clTH~E 234 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINH------------------------------GSSIHLIGWLSKKYKRIMCLTHME 234 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcc------------------------------cceeeeeeeecCCcceEEEEEccC
Confidence 999999999997652 2223333 566999999966657899999999
Q ss_pred cEEEEecCCCC
Q 001321 273 DILLWNTSTTA 283 (1100)
Q Consensus 273 ~I~lWd~~~~~ 283 (1100)
+..+|+++.+.
T Consensus 235 tf~~~ele~~~ 245 (376)
T KOG1188|consen 235 TFAIYELEDGS 245 (376)
T ss_pred ceeEEEccCCC
Confidence 99999999874
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=8.5e-15 Score=149.79 Aligned_cols=157 Identities=11% Similarity=0.201 Sum_probs=109.8
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
.+.+.|+++++|...|-+-|+|+.+-++...+.... ...|..+-|+..|+.|+.-+.|..+|.|++..-.
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----------~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----------VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeech----------heeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 477889999999999999999999887763333221 1478899999999999999999999999987431
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEe--ecCcCeEEEEEcCCCCEEEEEe-CCceEEEEecCCceEEEEeecCCC
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFS--LVNSPVRALQFTSSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDDISG 646 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~h~~~VtsLafSp~g~~LavGs-~dG~V~vwD~~~~~~~~~~~~~~~ 646 (1100)
..+. .+++. +...++ -.+.+=.+++||.+|.+++.|+ ....++||....+.++ .++.|
T Consensus 230 ~~~r-------~~e~e---------~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV---KILhG 290 (405)
T KOG1273|consen 230 DEGR-------DGEVE---------PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV---KILHG 290 (405)
T ss_pred ccCc-------cCCcC---------hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee---eeecC
Confidence 1100 00110 000000 0112223688999999998886 4578999999999887 45555
Q ss_pred CC-CCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 647 SS-SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 647 ~~-~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
.. .....+.|.++. ..+++- ..|.|++|.
T Consensus 291 ~kgE~l~DV~whp~r----------------------p~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 291 TKGEELLDVNWHPVR----------------------PIIASI-ASGVVYIWA 320 (405)
T ss_pred Cchhheeecccccce----------------------eeeeec-cCCceEEEE
Confidence 33 667788887543 234444 889999999
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=8e-15 Score=148.56 Aligned_cols=161 Identities=17% Similarity=0.263 Sum_probs=121.8
Q ss_pred EeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcCCCc----------eeeee------ecCCCeEEEEEecCCC-EE
Q 001321 71 LISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRS----------LACCL------KWESNITAFSVISGSH-FM 132 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s~~----------~l~~~------~~~~~Vt~~~~s~~~~-~l 132 (1100)
+..+|.+.|..|..-+ .|+|+++++.||.|.|||++.-. .++.. .|.-.|+.+.|-|-.. .+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999977 67899999999999999997542 11211 3345788899988665 55
Q ss_pred EEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC-CCEEEEEEcCCEEEEEEccCCE
Q 001321 133 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQ 211 (1100)
Q Consensus 133 ~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~-g~~ll~~~~dg~V~lwdl~~~~ 211 (1100)
.+++-|.+++|||..+.+.... |+++ +.|.+-+++|-.. ..++++|+.+-.|++-|+.+|.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~---F~me---------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVD---FKME---------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ecccccceEEEeecccceeeEE---eecC---------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 5666799999999875322211 4444 5677777877544 4567888899999999999997
Q ss_pred EE-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEEecC
Q 001321 212 II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 212 ~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lWd~~ 280 (1100)
.. .+.|| +..|.++.|. |... .|++|+.||.|++||+.
T Consensus 180 ~sH~LsGH------------------------------r~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 180 FSHTLSGH------------------------------RDGVLAVEWS-PSSEWVLATGSADGAIRLWDIR 219 (397)
T ss_pred ceeeeccc------------------------------cCceEEEEec-cCceeEEEecCCCceEEEEEee
Confidence 64 45666 8899999996 6655 57899999999999985
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=2.3e-15 Score=167.27 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=110.6
Q ss_pred cCCCCcEEEEEec-CCcEEEeeCCCCceeEEeeeccceeeeeecCC---CCCeeEEEEeeCCCeEEEEecCceEEEEEec
Q 001321 491 CHSVDRVYLAGYH-DGSVRIWDATYPVFKLICALDAEVQGIEVAGS---RAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1100)
Q Consensus 491 ~s~~~~~l~Tg~~-DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h---~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~ 566 (1100)
+..|...||+++. |+.|+|||+...... +....... ..+..| ...+++|..+..|.+|.+...|+.|++|++.
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~--~r~ep~~~-~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTA--YRQEPRGS-DKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccc--cccCCCcc-cCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 4456668998887 999999999866532 11111110 012223 4568888888888998888889999999998
Q ss_pred CCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcC-e-EEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecC
Q 001321 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSP-V-RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI 644 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~-V-tsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~ 644 (1100)
..... ++..+.++.-. . -.-..||++.+|++|+.|..+++|.+..+..- ...+
T Consensus 302 s~s~s-----------------------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~--~~~l 356 (720)
T KOG0321|consen 302 SLSIS-----------------------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP--PALL 356 (720)
T ss_pred ccCcC-----------------------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC--hhhh
Confidence 75321 22222232211 1 12347899999999999999999999987653 1234
Q ss_pred CCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 645 SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 645 ~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
.+|.-.|++++|.+-... . ++++++|..+.+|+..
T Consensus 357 ~Ght~eVt~V~w~pS~~t--------------------~-v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 357 LGHTREVTTVRWLPSATT--------------------P-VATCSDDFRVKIWRLS 391 (720)
T ss_pred hCcceEEEEEeeccccCC--------------------C-ceeeccCcceEEEecc
Confidence 589999999999854332 2 5555999999999953
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.8e-17 Score=182.04 Aligned_cols=195 Identities=19% Similarity=0.289 Sum_probs=167.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
..|||.+.|-|+.|++...+||.|+.+|.|++||+. ...+..+.+|..++..|.|+|-+.|.++++.|..+.+||+...
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 469999999999999999999999999999999994 5556688899999999999999999999999999999999977
Q ss_pred ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
-+.+.+ .|...|.++.|+|+|+|++.|.+|.+|+||+... |++... ++.|. +.|.++.|||.
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~e---f~~~e------------~~v~sle~hp~ 207 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSKE---FKSHE------------GKVQSLEFHPL 207 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--cccccc---ccccc------------ccccccccCch
Confidence 777776 6888899999999999999999999999999864 666643 66666 88999999995
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
.-++..|+.|++|++||+++-+++...+. +...|.++.|. |+|..+++
T Consensus 208 --e~Lla~Gs~d~tv~f~dletfe~I~s~~~-----------------------------~~~~v~~~~fn-~~~~~~~~ 255 (825)
T KOG0267|consen 208 --EVLLAPGSSDRTVRFWDLETFEVISSGKP-----------------------------ETDGVRSLAFN-PDGKIVLS 255 (825)
T ss_pred --hhhhccCCCCceeeeeccceeEEeeccCC-----------------------------ccCCceeeeec-CCceeeec
Confidence 33478999999999999998776543321 15678899975 99999999
Q ss_pred EEcCCc
Q 001321 268 GYIDGD 273 (1100)
Q Consensus 268 g~~DG~ 273 (1100)
|.....
T Consensus 256 G~q~sl 261 (825)
T KOG0267|consen 256 GEQISL 261 (825)
T ss_pred Cchhhh
Confidence 887653
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.1e-14 Score=160.65 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=145.8
Q ss_pred ccceeeeec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCC-EEEEEECCCcEE
Q 001321 24 LNLRIAVHY-GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQ 101 (1100)
Q Consensus 24 ~~~~~~~~~-G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~ 101 (1100)
|..+..+-| ||.+.|.|+..+|.|.+||+|+.||.||||.+.+..++....-.+-|.+|+|+|.+. .++++..++.+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence 444555555 999999999999999999999999999999998877777666777899999999653 344444444444
Q ss_pred EEEcCCC--------------------------------------ceeeeeecCCCeEEEEEecCCCEEEEEeCC---Cc
Q 001321 102 VWSLESR--------------------------------------SLACCLKWESNITAFSVISGSHFMYIGDEN---GL 140 (1100)
Q Consensus 102 vWd~~s~--------------------------------------~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d---G~ 140 (1100)
|-|..-| .+...+.+...|..+.|+..|+||++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 4443221 012334667789999999999999988753 23
Q ss_pred EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCC
Q 001321 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGK 219 (1100)
Q Consensus 141 V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~ 219 (1100)
|.|..+. ....|.||+.. .+.|.++.|||. .-+|+++.. ..|+|||+...+++.. ...
T Consensus 548 VliHQLS---K~~sQ~PF~ks--------------kG~vq~v~FHPs--~p~lfVaTq-~~vRiYdL~kqelvKkL~tg- 606 (733)
T KOG0650|consen 548 VLIHQLS---KRKSQSPFRKS--------------KGLVQRVKFHPS--KPYLFVATQ-RSVRIYDLSKQELVKKLLTG- 606 (733)
T ss_pred EEEEecc---cccccCchhhc--------------CCceeEEEecCC--CceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence 4444443 22333344332 177999999996 333555555 4569999988655322 111
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 220 ~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.+.|.+++- +|.|..|+.|+.|+.+..+|+.
T Consensus 607 -----------------------------~kwiS~msi-hp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 607 -----------------------------SKWISSMSI-HPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred -----------------------------Ceeeeeeee-cCCCCeEEEecCCCeeEEEEcc
Confidence 556777775 4999999999999999999885
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=1e-14 Score=150.41 Aligned_cols=167 Identities=17% Similarity=0.268 Sum_probs=128.0
Q ss_pred EeCCCCCCEEEEEEEe----CCCEEEEEECCCcEEEEEcCCC---ceeeee---ecCCCeEEEEEecC----CCEEEEEe
Q 001321 71 LISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSLESR---SLACCL---KWESNITAFSVISG----SHFMYIGD 136 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~----d~~~Lls~s~d~~I~vWd~~s~---~~l~~~---~~~~~Vt~~~~s~~----~~~l~~G~ 136 (1100)
+...|+.+|-.++|.+ +...+++....+.+.+++.... +++.++ .++..-.-++|..+ ..++|+|+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3456888999999985 3344555556788999987654 345554 24456667777754 45899999
Q ss_pred CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 137 ~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
.-|.|+|.++.. +++... +.+|. .+|..|.|||. ..+++++++.|-.|++||+++..++..+
T Consensus 113 ~~GvIrVid~~~--~~~~~~---~~ghG------------~sINeik~~p~-~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 113 YLGVIRVIDVVS--GQCSKN---YRGHG------------GSINEIKFHPD-RPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ceeEEEEEecch--hhhccc---eeccC------------ccchhhhcCCC-CCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 999999988775 344422 44555 88999999997 5678999999999999999999998887
Q ss_pred cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 217 GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 217 ~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|.- + .++..|.++.|. ++|.+|++++.|-+|.+|++...
T Consensus 175 GG~------e--------------------gHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 175 GGV------E--------------------GHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred ccc------c--------------------cccCcEEEEEEc-CCCCeeeccCCcceEEEEecChh
Confidence 640 1 128899999986 99999999999999999999744
No 154
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=7.9e-15 Score=157.97 Aligned_cols=270 Identities=14% Similarity=0.191 Sum_probs=189.7
Q ss_pred cccccceeeeecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCc---e-E-------EEeCCCCCCEEEEEEEeC-
Q 001321 21 AADLNLRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGI---E-G-------LLISPSQLPYKNLEFLQN- 87 (1100)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~---~-~-------~~~~~h~~~V~~l~fs~d- 87 (1100)
+..-.++....+-|++.|..+.|=|+. .++|+++..|.|+|||.... . . +.+.+|+..=..|+|++.
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred ccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 333456677778889999999999965 57788899999999997321 1 1 256677775566899874
Q ss_pred CCEEEEEECCCcEEEEEcCCCce-------eee-eecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeece
Q 001321 88 QGFLISITNDNEIQVWSLESRSL-------ACC-LKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~-------l~~-~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~ 158 (1100)
.++|++++.|++|.+||+..... ... ..|...|..++|++.. .++++.+.|+.+.|||......+.. .
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~---~ 266 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS---H 266 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc---c
Confidence 47899999999999999965422 122 2778899999999876 4677888999999999885222222 2
Q ss_pred eecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE--EEEEecCCcccccccccCCCCCCCC
Q 001321 159 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDS 236 (1100)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~ 236 (1100)
...+|. +.|.|++|+|- ++..||+|+.|++|++||++.-+ +..+.+|
T Consensus 267 ~~~ah~------------~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H------------------ 315 (422)
T KOG0264|consen 267 SVKAHS------------AEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGH------------------ 315 (422)
T ss_pred cccccC------------CceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCC------------------
Confidence 355555 89999999997 46669999999999999998753 3445555
Q ss_pred ccccCCCCCCCCCCceEEEEEecCC-CCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEe
Q 001321 237 TFLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHW 315 (1100)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~spd-g~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w 315 (1100)
...|..+-|. |. ...|++++.|+.+.+||+..-...+........+. .+....+.....|..++|
T Consensus 316 ------------~dev~~V~WS-Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp-EllF~HgGH~~kV~DfsW 381 (422)
T KOG0264|consen 316 ------------EDEVFQVEWS-PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP-ELLFIHGGHTAKVSDFSW 381 (422)
T ss_pred ------------CcceEEEEeC-CCCCceeEecccCCcEEEEeccccccccChhhhccCCc-ceeEEecCcccccccccC
Confidence 8899999996 65 46788999999999999976543332111111111 122223334455666666
Q ss_pred cccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 316 STNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 316 ~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
+. ..-..+++...+. ++.+|...
T Consensus 382 np-------~ePW~I~SvaeDN-------~LqIW~~s 404 (422)
T KOG0264|consen 382 NP-------NEPWTIASVAEDN-------ILQIWQMA 404 (422)
T ss_pred CC-------CCCeEEEEecCCc-------eEEEeecc
Confidence 44 3456677776665 55555444
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=2.4e-12 Score=150.58 Aligned_cols=202 Identities=20% Similarity=0.374 Sum_probs=152.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--eEEEeCCCC-CCEEEEEE-EeCCC-EEEEEEC-CCcEEEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQ-LPYKNLEF-LQNQG-FLISITN-DNEIQVW 103 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--~~~~~~~h~-~~V~~l~f-s~d~~-~Lls~s~-d~~I~vW 103 (1100)
...++...+.++.|++.+..++.++.|+.+.+|+.... .......+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 34678899999999999999999999999999999666 344444433 47888888 77777 5555555 8999999
Q ss_pred EcCC-Cce-eeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 104 SLES-RSL-ACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 104 d~~s-~~~-l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
|+.. ... .....|...|.+++|+|++.+++.+.. ++.+++|+... +... ..+.+|. ..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~------------~~v~ 202 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPL---STLAGHT------------DPVS 202 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceE---EeeccCC------------CceE
Confidence 9998 444 444578889999999999999998886 99999999875 2222 1244444 7899
Q ss_pred EEEeccCCCCC-EEEEEEcCCEEEEEEccCCEEEE--EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 181 GVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 181 sv~f~P~~~g~-~ll~~~~dg~V~lwdl~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
++.|+| ++. .++.++.|+.|++||...+.... ..+| ...+ ..+|
T Consensus 203 ~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------------------~~~~-~~~~ 249 (466)
T COG2319 203 SLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH------------------------------SDSV-VSSF 249 (466)
T ss_pred EEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCC------------------------------Ccce-eEeE
Confidence 999986 454 34455899999999888666554 3333 2222 1155
Q ss_pred ecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+|++..+++++.|+.+++|+....
T Consensus 250 -~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 250 -SPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred -CCCCCEEEEecCCCcEEEeeecCC
Confidence 489988999999999999998643
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=8.7e-14 Score=142.40 Aligned_cols=291 Identities=14% Similarity=0.192 Sum_probs=189.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-----EEEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-----GLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-----~~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~v 102 (1100)
+.-||..-|.|+.|++-|+.+|+|+.|++|+||+.+... .--...|.+.|-.+.|.+ -|+.+++++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 445778889999999999999999999999999963221 124457999999999965 5788999999999999
Q ss_pred EEcCCC---------ceeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 103 WSLESR---------SLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 103 Wd~~s~---------~~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
|.-... ...+++ ...+.|+.+.|.|. +-.||+.+.||.+||+.... -..+.+ +.+.. ..+....
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d-p~nLs~--W~Lq~-Ei~~~~~ 163 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD-PMNLSQ--WTLQH-EIQNVID 163 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC-cccccc--chhhh-hhhhccC
Confidence 986321 123333 45578999999987 46889999999999987532 112221 22221 1222222
Q ss_pred CCCCCCCCeEEEEeccCCCCC-EEEEEEcC-----CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGN-RVLIAYEN-----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~-~ll~~~~d-----g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
.|.....+..||.|+|+.... .|+.|+.+ +.+.||...++.-...... +++
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva-------~L~---------------- 220 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA-------ELP---------------- 220 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh-------hcC----------------
Confidence 233345788999999875443 35566655 3778888766532111100 110
Q ss_pred CCCCCCceEEEEEecCCC----CEEEEEEcCCcEEEEecCCCCCCCC-cccCCC-----CcceeeeccccCCCcceEEEE
Q 001321 245 HQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTSTTASTKG-QQTGSR-----NNVVKLELSSAERRLPVIVLH 314 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spdg----~~l~sg~~DG~I~lWd~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~i~~~~ 314 (1100)
++...|+.++|. |+- ..|++++.|| |++|++........ .....+ -++.++.. ...+..++..+.
T Consensus 221 --d~~dpI~di~wA-Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~-~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 221 --DHTDPIRDISWA-PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE-LDDHNGEVWRVR 295 (361)
T ss_pred --CCCCcceeeeec-cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee-ccCCCCceEEEE
Confidence 127889999997 753 4799999999 99999985432211 001111 12222221 222344666666
Q ss_pred ecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecC
Q 001321 315 WSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITL 367 (1100)
Q Consensus 315 w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~ 367 (1100)
|.- .|..|.+.|+|+ .+++|........+|...+....
T Consensus 296 wNm--------tGtiLsStGdDG-------~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 296 WNM--------TGTILSSTGDDG-------CVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred Eee--------eeeEEeecCCCc-------eeeehhhhhhhhheeeeEEeccC
Confidence 554 367788888888 88999887766666655544443
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=9.7e-15 Score=156.33 Aligned_cols=201 Identities=15% Similarity=0.242 Sum_probs=156.9
Q ss_pred CCCCeEEEEEcC-------CCCEEEEEECCCeEEEEeCCCc---eEEEeC-------------------CCCCCEEEEEE
Q 001321 34 IPATASILAFDH-------IQRLLAIATLDGRIKVIGGDGI---EGLLIS-------------------PSQLPYKNLEF 84 (1100)
Q Consensus 34 ~~~~v~~la~sp-------~~~lLA~gs~dG~I~vw~~~~~---~~~~~~-------------------~h~~~V~~l~f 84 (1100)
+|..+-|++|-- -|+++|+|+-|..|.|||++-. ...+.+ +|+..|-+|.|
T Consensus 172 lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 172 LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred ccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 466677877742 4689999999999999998533 222222 48888889998
Q ss_pred EeC-CCEEEEEECCCcEEEEEcCCCceeeeee-cCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeec
Q 001321 85 LQN-QGFLISITNDNEIQVWSLESRSLACCLK-WESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNIS 161 (1100)
Q Consensus 85 s~d-~~~Lls~s~d~~I~vWd~~s~~~l~~~~-~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~ 161 (1100)
..+ ...|+|++.|.+|++||+.+++...++. |.++|.++.|+|.. .+|++|+.|++|.+.+.... ..... .+++.
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-~~s~~-~wk~~ 329 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-SNSGK-EWKFD 329 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-cccCc-eEEec
Confidence 774 3578999999999999999999999985 77899999999875 58999999999999887631 11111 13343
Q ss_pred ccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC-EEE-EEecCCcccccccccCCCCCCCCccc
Q 001321 162 ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QII-FVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1100)
Q Consensus 162 ~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~-~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g 239 (1100)
+.|..++|+|..... ++++..||+|+-+|++.. +++ ....|
T Consensus 330 ---------------g~VEkv~w~~~se~~-f~~~tddG~v~~~D~R~~~~~vwt~~AH--------------------- 372 (463)
T KOG0270|consen 330 ---------------GEVEKVAWDPHSENS-FFVSTDDGTVYYFDIRNPGKPVWTLKAH--------------------- 372 (463)
T ss_pred ---------------cceEEEEecCCCcee-EEEecCCceEEeeecCCCCCceeEEEec---------------------
Confidence 779999999975554 899999999999999886 333 33334
Q ss_pred cCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.++|++...-.++++++.|+.+.+|++...
T Consensus 373 ---------d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 373 ---------DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred ---------cCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 8899999987566678999999999999998754
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.63 E-value=2.1e-14 Score=154.76 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=97.8
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC-CeEEEEecCceEEEEEecCCCCCccee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1100)
+|.+++.+|.|.+||+...... . .-...|.++...|+|||.. .+|++.+.|..+.+||......
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~---------~-~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----- 243 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPI---------F-HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS----- 243 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcc---------c-chhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----
Confidence 6788999999999999876532 1 1145799999999999965 4678899999999999986421
Q ss_pred eeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEE
Q 001321 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMT 655 (1100)
Q Consensus 576 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~ 655 (1100)
..-.....|.++|+|+++|.+||+|+..|.|..||+++.+.-. ..+..|...|++|+
T Consensus 244 ---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~va 300 (673)
T KOG4378|consen 244 ---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVA 300 (673)
T ss_pred ---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEE
Confidence 1112456789999999999999999999999999999753321 12345889999999
Q ss_pred Eee
Q 001321 656 WTE 658 (1100)
Q Consensus 656 fs~ 658 (1100)
|-+
T Consensus 301 fq~ 303 (673)
T KOG4378|consen 301 FQP 303 (673)
T ss_pred eee
Confidence 983
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=2.6e-14 Score=143.16 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=65.2
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee--cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~--~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
..+.+|.+.|+++.|-.+ .+|.++...|.|++|++++.+-+..+. +...|+.+..-|+ +.+.+-..|+.+..|+++
T Consensus 8 fvLRp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred eEeccccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 344599999999999988 569999999999999999998877764 4567899988888 667788899999999987
Q ss_pred c
Q 001321 148 A 148 (1100)
Q Consensus 148 ~ 148 (1100)
-
T Consensus 86 ~ 86 (323)
T KOG0322|consen 86 Y 86 (323)
T ss_pred C
Confidence 4
No 160
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=5.5e-16 Score=174.28 Aligned_cols=208 Identities=17% Similarity=0.216 Sum_probs=174.1
Q ss_pred ceeeeecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 26 LRIAVHYG-IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 26 ~~~~~~~G-~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
++...+++ |...+.|+..-..++.+++|+.|-.+-||.....- .+-+.+|..+|.+|.|.+....|++++.+|+|+||
T Consensus 18 ~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 18 VWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred cccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 34445543 56678888887888999999999999999984443 33468999999999999998889999999999999
Q ss_pred EcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 104 d~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
|++..+.++++ .|..+++.+.|+|-+.|.+.|+.|+.+++||....... |.+.+|. ..|..+
T Consensus 98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-----~~~~s~~------------~vv~~l 160 (825)
T KOG0267|consen 98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS-----HTYKSHT------------RVVDVL 160 (825)
T ss_pred ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce-----eeecCCc------------ceeEEE
Confidence 99999887776 88899999999999999999999999999997632211 3355555 779999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec-CCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
.|.| +|.+++.+.+|.+++|||+..|++...|. | .+.+.++-|+ |.
T Consensus 161 ~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~------------------------------e~~v~sle~h-p~ 207 (825)
T KOG0267|consen 161 RLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSH------------------------------EGKVQSLEFH-PL 207 (825)
T ss_pred eecC--CCceeeccCCcceeeeecccccccccccccc------------------------------cccccccccC-ch
Confidence 9988 79889999999999999999999876553 5 7788888865 98
Q ss_pred CCEEEEEEcCCcEEEEecCCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
.-.+++|+.|++++|||+++-+
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred hhhhccCCCCceeeeeccceeE
Confidence 8899999999999999998653
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=151.49 Aligned_cols=218 Identities=16% Similarity=0.207 Sum_probs=155.0
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCceEE----EeCCCCCCEEEEEEEeC-CCEEEEEECCCcEEEEEc
Q 001321 32 YGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~~~~----~~~~h~~~V~~l~fs~d-~~~Lls~s~d~~I~vWd~ 105 (1100)
-||...--+|+|||.- ..|++|..-+.|++|-.....-. -+.+|+..|..|+|||. .+.++||+.|++|+|||+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 3778888999999933 45788888899999987444322 34459999999999994 468899999999999999
Q ss_pred CCC---ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 106 ESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 106 ~s~---~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
+++ ..+.+..|.+.|..++|+....+||+|+.+|+++||++..-... +....+..|. .+|++|
T Consensus 288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--~pVA~fk~Hk------------~pItsi 353 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--QPVATFKYHK------------APITSI 353 (440)
T ss_pred cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC--CcceeEEecc------------CCeeEE
Confidence 998 34555688899999999999999999999999999999864332 1112355555 899999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccc-ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ-LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
.|||.+++. |++++.|..|.|||+.-..-.......... +. .++ | .+-.-+...+.|--+.|+...
T Consensus 354 eW~p~e~s~-iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~-dlP--p---------QLLFVHqGQke~KevhWH~Qi 420 (440)
T KOG0302|consen 354 EWHPHEDSV-IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQ-DLP--P---------QLLFVHQGQKEVKEVHWHRQI 420 (440)
T ss_pred EeccccCce-EEeccCCCcEEEEEeeccCChhhhccccccchh-cCC--c---------eeEEEecchhHhhhheeccCC
Confidence 999987776 999999999999998643210000000000 00 000 0 000111126777788898555
Q ss_pred CCEEEEEEcCCcEEE
Q 001321 262 GSILAVGYIDGDILL 276 (1100)
Q Consensus 262 g~~l~sg~~DG~I~l 276 (1100)
.-++++.+.||--.+
T Consensus 421 PG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 421 PGLLVSTAIDGFNVF 435 (440)
T ss_pred CCeEEEecccceeEE
Confidence 567888888884433
No 162
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-13 Score=162.73 Aligned_cols=183 Identities=13% Similarity=0.202 Sum_probs=134.4
Q ss_pred EeCCCceEEEeCCCCCCEEEEEEEeCC-CEEEEEECCCcEEEEEcCCC-------ceeeeee-cCCCeEEEEEecCCCEE
Q 001321 62 IGGDGIEGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESR-------SLACCLK-WESNITAFSVISGSHFM 132 (1100)
Q Consensus 62 w~~~~~~~~~~~~h~~~V~~l~fs~d~-~~Lls~s~d~~I~vWd~~s~-------~~l~~~~-~~~~Vt~~~~s~~~~~l 132 (1100)
|+..+..+..+.+|...|..++.++.. .+++|++.||+|++||...- +-..++. ..+.+.++.+-+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 888999999999999999999998765 89999999999999998542 1122333 45789999999999999
Q ss_pred EEEeCCCcEEEEEEecCC-CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC-EEEEEEcCCEEEEEEccCC
Q 001321 133 YIGDENGLMSVIKYDADE-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 133 ~~G~~dG~V~Iw~~d~~~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~-~ll~~~~dg~V~lwdl~~~ 210 (1100)
|+|+.||.|++.+++... .+....--+++... ..+.|+++.-.-...+. .++.+...+.|+.||....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~----------~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK----------KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeeccccc----------CCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999988621 11111111222211 12556655332223444 6778888899999999876
Q ss_pred EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.......+ ++ +.+.|+++|- +|.+.+++.|...|.+.+||+.-+
T Consensus 1184 ~~~w~lk~-------~~--------------------~hG~vTSi~i-dp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1184 HDAWRLKN-------QL--------------------RHGLVTSIVI-DPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhHHhhhc-------Cc--------------------cccceeEEEe-cCCceEEEEecCCceEEEEEeecC
Confidence 54433332 22 2889999995 599999999999999999999755
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.59 E-value=3.8e-13 Score=142.75 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=124.7
Q ss_pred CCCEEEEEEEeCCC-EEEEEECCCcEEEEEcCCCc---------eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001321 76 QLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRS---------LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1100)
Q Consensus 76 ~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~~s~~---------~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw 144 (1100)
..||..+.|.++.. +|++++.|..|++|-+.... ++..+ .|...|+++.|+|+++.+|+|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45899999999876 99999999999999885431 23334 678899999999999999999999999999
Q ss_pred EEecCC-----CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cC
Q 001321 145 KYDADE-----GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GG 218 (1100)
Q Consensus 145 ~~d~~~-----~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~ 218 (1100)
.....+ ....+ .+..++-+ -.-+.+...|..++|.| ++..+.+++-|.++++||+..+.+.... +|
T Consensus 93 k~~~~~~~~~d~e~~~----~ke~w~v~--k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADL----NKEKWVVK--KVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred EecCcCCccccchhhh----CccceEEE--EEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEeecccc
Confidence 876210 00000 00000000 00122347899999988 7888999999999999999999887644 34
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
...|+.++|. |-+.++++-+.|...+..++.
T Consensus 165 ------------------------------~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 165 ------------------------------EHYVQGVAWD-PLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred ------------------------------ccccceeecc-hhhhhhhhhccCcccceeeee
Confidence 7889999997 999999999999855555543
No 164
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.5e-12 Score=149.29 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=144.6
Q ss_pred eecCCCCCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCceEEEeCCCCCCEE--------------------------
Q 001321 30 VHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGLLISPSQLPYK-------------------------- 80 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~---lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~-------------------------- 80 (1100)
...++...++.+.+.|... ++.+++.||.|++|+....+.+....-..++-
T Consensus 52 ~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~ 131 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILT 131 (792)
T ss_pred hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeee
Confidence 4567888888888887664 67899999999999986655442222111111
Q ss_pred ---------------------------------EEEEEeCCCEEEEEECCCcEEEEEcCCCceee-----eeecCCCeEE
Q 001321 81 ---------------------------------NLEFLQNQGFLISITNDNEIQVWSLESRSLAC-----CLKWESNITA 122 (1100)
Q Consensus 81 ---------------------------------~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~-----~~~~~~~Vt~ 122 (1100)
.+.+++. +....+..+..+.+|+..++.... ...|.-.++|
T Consensus 132 ~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~ 210 (792)
T KOG1963|consen 132 TFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITC 210 (792)
T ss_pred ecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhccccee
Confidence 1122222 122333334557788887754111 1134456899
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEec-CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCE
Q 001321 123 FSVISGSHFMYIGDENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1100)
Q Consensus 123 ~~~s~~~~~l~~G~~dG~V~Iw~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~ 201 (1100)
++++|.++++++|+.+|.|.||.--. +..... ...+.+|. ..|.+++|++ +|..|++|+..|.
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t--~t~lHWH~------------~~V~~L~fS~--~G~~LlSGG~E~V 274 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSET--CTLLHWHH------------DEVNSLSFSS--DGAYLLSGGREGV 274 (792)
T ss_pred EEeccccceEEEeccCCcEEEEecccccccccc--ceEEEecc------------cccceeEEec--CCceEeecccceE
Confidence 99999999999999999999997322 222222 23466665 8999999977 7999999999999
Q ss_pred EEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 202 V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
+++|.+.+++. ++.-. + ...|..+.|. ||+...+..+.|+.|.+-...+
T Consensus 275 Lv~Wq~~T~~k-qfLPR--------L---------------------gs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 275 LVLWQLETGKK-QFLPR--------L---------------------GSPILHIVVS-PDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EEEEeecCCCc-ccccc--------c---------------------CCeeEEEEEc-CCCCeEEEEecCceEEEEeccc
Confidence 99999999873 22211 1 5678888874 9999999999999999998866
Q ss_pred CC
Q 001321 282 TA 283 (1100)
Q Consensus 282 ~~ 283 (1100)
.+
T Consensus 324 l~ 325 (792)
T KOG1963|consen 324 LE 325 (792)
T ss_pred hh
Confidence 54
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.58 E-value=3.5e-13 Score=138.65 Aligned_cols=200 Identities=11% Similarity=0.120 Sum_probs=144.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCce--------------EEEeCCCCCCEEEEEEE-------eCCCEEEEEECCC
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIE--------------GLLISPSQLPYKNLEFL-------QNQGFLISITNDN 98 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~--------------~~~~~~h~~~V~~l~fs-------~d~~~Lls~s~d~ 98 (1100)
.+.|+|||+.+.+-+.|..+++|+++..- ..........|-.-+|- |+..+.++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 37899999999999999999999874321 11222233445555554 4556777788899
Q ss_pred cEEEEEcCCCceeeeee---cC---CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 99 EIQVWSLESRSLACCLK---WE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 99 ~I~vWd~~s~~~l~~~~---~~---~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
-|.+||.-+|++.+++. |- ....+++|+|++.+|++|.... |+|++.....+.... |....+. ..
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrc-irvFdt~RpGr~c~v--y~t~~~~---k~--- 204 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC-IRVFDTSRPGRDCPV--YTTVTKG---KF--- 204 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccce-EEEeeccCCCCCCcc--hhhhhcc---cc---
Confidence 99999999999988773 22 2457899999999999987654 899887432222221 2111110 00
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~ 251 (1100)
...+-+.+++|||.+ .+.+++++....+-||....+++..+ .+| .+.
T Consensus 205 -gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh------------------------------~gG 252 (406)
T KOG2919|consen 205 -GQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGH------------------------------GGG 252 (406)
T ss_pred -cccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeeccc------------------------------CCC
Confidence 112668899999984 44599999999999999988877654 455 889
Q ss_pred eEEEEEecCCCCEEEEEEc-CCcEEEEecCC
Q 001321 252 ISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1100)
Q Consensus 252 V~sl~w~spdg~~l~sg~~-DG~I~lWd~~~ 281 (1100)
|+-++|. ++|+++.+|.. |-.|..||+..
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeehh
Confidence 9999996 99999999875 66799999863
No 166
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.9e-13 Score=140.08 Aligned_cols=208 Identities=16% Similarity=0.133 Sum_probs=155.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce--------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~--------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
.||.+.|.++.|+.++++||+|+.|-.++||+.+..- .+...+|...|-+|+|.-...+|.++..+++|+.-
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 4778899999999999999999999999999974321 22345677899999999988999999999999999
Q ss_pred EcCCCceeeeeecC---CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 104 SLESRSLACCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 104 d~~s~~~l~~~~~~---~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
|+++++-+..+.+. +.|..+..+|..+.+++.+.+|.|.+|+......... ++ ++.+. .....
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~--~~-~~AN~-----------~~~F~ 198 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS--LV-LPANS-----------GKNFY 198 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--ee-eecCC-----------Cccce
Confidence 99999999888776 4899999999999999999999999999765332222 12 33222 16688
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEE--EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
++.|||- ...+|++.++.+-+-+||..-..- .+.-+.++++.. .....+..|.
T Consensus 199 t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~------------------------~~~~M~~~~~ 253 (609)
T KOG4227|consen 199 TAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE------------------------NTEWMGSLWS 253 (609)
T ss_pred eeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCccc------------------------chhhhheeeC
Confidence 8999997 455689999999889999875432 222222111111 3345667775
Q ss_pred cCCCCEEEEEEcCCcEEEEec
Q 001321 259 SSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~ 279 (1100)
|+|..+++.-..-.-.+||+
T Consensus 254 -~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 254 -PSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred -CCCCeehhhhccCCCEEeee
Confidence 88887776544444444544
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.54 E-value=7.7e-11 Score=137.72 Aligned_cols=354 Identities=21% Similarity=0.363 Sum_probs=237.6
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-eeeeeec-C-CCeEEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKW-E-SNITAF 123 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-~l~~~~~-~-~~Vt~~ 123 (1100)
.........+..+.++.... .....|...+..+.|.+++..++..+.|+.+.+|+...+. .+..+.. . ..+..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (466)
T COG2319 39 GILLLALLSDSLVSLPDLSS---LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKL 115 (466)
T ss_pred ceEEEeecccccccccccch---heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeE
Confidence 33344444445555554443 4567889999999999999999999999999999999986 4444432 3 367777
Q ss_pred EE-ecCCC-EEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-C
Q 001321 124 SV-ISGSH-FMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-N 199 (1100)
Q Consensus 124 ~~-s~~~~-~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-d 199 (1100)
.+ .+++. .++... .++.+.+|++... .... ..+..|. ..|..+.|+| ++..++.+.. +
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~---~~~~~~~------------~~v~~~~~~~--~~~~~~~~~~~~ 177 (466)
T COG2319 116 ALSSPDGNSILLASSSLDGTVKLWDLSTP-GKLI---RTLEGHS------------ESVTSLAFSP--DGKLLASGSSLD 177 (466)
T ss_pred EEECCCcceEEeccCCCCccEEEEEecCC-CeEE---EEEecCc------------ccEEEEEECC--CCCEEEecCCCC
Confidence 77 77777 444434 4899999998741 1122 2244554 7788999988 5556777775 9
Q ss_pred CEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEE
Q 001321 200 ALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLW 277 (1100)
Q Consensus 200 g~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lW 277 (1100)
+.+++|++..+..... .+| ...|.++.|. |++. .+++++.|+.|++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 178 GTIKLWDLRTGKPLSTLAGH------------------------------TDPVSSLAFS-PDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred CceEEEEcCCCceEEeeccC------------------------------CCceEEEEEc-CCcceEEEEecCCCcEEEE
Confidence 9999999998555433 333 7889999997 9998 55555999999999
Q ss_pred ecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccc
Q 001321 278 NTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENL 357 (1100)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~ 357 (1100)
|...+. .... .+ . + ..
T Consensus 227 d~~~~~------------~~~~------------~~---------~---------~-----------------~~----- 242 (466)
T COG2319 227 DLSTGK------------LLRS------------TL---------S---------G-----------------HS----- 242 (466)
T ss_pred ECCCCc------------EEee------------ec---------C---------C-----------------CC-----
Confidence 664220 0000 00 0 0 00
Q ss_pred eeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCce
Q 001321 358 RCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIM 437 (1100)
Q Consensus 358 ~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i 437 (1100)
T Consensus 243 -------------------------------------------------------------------------------- 242 (466)
T COG2319 243 -------------------------------------------------------------------------------- 242 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCce
Q 001321 438 TVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVF 517 (1100)
Q Consensus 438 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l 517 (1100)
... ...+++++.++++++.|+.+++||......
T Consensus 243 ----------------------------------------------~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 243 ----------------------------------------------DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred ----------------------------------------------cce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 000 001334445778999999999999986653
Q ss_pred eEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEE
Q 001321 518 KLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRA 597 (1100)
Q Consensus 518 ~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 597 (1100)
. . ....+|...|.++.|.|++..+++++.|+.+.+|+...... ..
T Consensus 276 ~-~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------------~~ 320 (466)
T COG2319 276 L-L---------RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------------------LS 320 (466)
T ss_pred E-E---------EEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-------------------------EE
Confidence 1 0 11246778999999999999988899999999997766421 11
Q ss_pred E--EeecCcCeEEEEEcCCCCEEEEE-eCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCC
Q 001321 598 V--FSLVNSPVRALQFTSSGAKLAVG-FECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSER 674 (1100)
Q Consensus 598 ~--~~~h~~~VtsLafSp~g~~LavG-s~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~ 674 (1100)
. ...|...|..+.|++++..++++ ..|+.+.+|++.......... ....+..+.+.. . .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~------------ 382 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVSFSP-D-G------------ 382 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEec----CCceEEEEEECC-C-C------------
Confidence 2 24677789999994343556666 678999999999877221111 122278888875 4 3
Q ss_pred CCCCCCCceEEEEEecceeEEEEeCCCCcc
Q 001321 675 EVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1100)
Q Consensus 675 ~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~ 704 (1100)
.....+..++.+.+|+...+..
T Consensus 383 --------~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 383 --------RVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred --------CEEEEecCCCceEEEecccCee
Confidence 1222478999999999665443
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.53 E-value=2.5e-13 Score=142.54 Aligned_cols=209 Identities=14% Similarity=0.161 Sum_probs=155.7
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-----------------eEEEeCCCCCCEEEEEEEe-C
Q 001321 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----------------EGLLISPSQLPYKNLEFLQ-N 87 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-----------------~~~~~~~h~~~V~~l~fs~-d 87 (1100)
.+.+-|||...++....|. +..++|+=++.|+|+||++... .+....+|++-=-.|+||| .
T Consensus 145 ~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 3345566655555444443 4568888888999999987321 2345567887778999999 3
Q ss_pred CCEEEEEECCCcEEEEEcCCCcee----eeeecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecc
Q 001321 88 QGFLISITNDNEIQVWSLESRSLA----CCLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISA 162 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l----~~~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~ 162 (1100)
-+.|++++.-+.|++|...++.-. ....|...|-.++|+|..+ .+++++-||+|+|||+.....+.. .....
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~---~~~kA 300 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA---VSTKA 300 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce---eEeec
Confidence 367999999999999999887543 2336888999999999864 788889999999999986433322 11344
Q ss_pred cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE---EE-EEecCCcccccccccCCCCCCCCcc
Q 001321 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---II-FVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~---~~-~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
|. +.|..|.|+.. -.+|++|..||+++|||+++-+ ++ .+.-|
T Consensus 301 h~------------sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-------------------- 346 (440)
T KOG0302|consen 301 HN------------SDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-------------------- 346 (440)
T ss_pred cC------------CceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEec--------------------
Confidence 44 88999999654 3479999999999999998743 33 33334
Q ss_pred ccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
..+|+|+.|+..+...|++++.|..|.+||+...
T Consensus 347 ----------k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 347 ----------KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ----------cCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 8899999998445678899999999999999754
No 169
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.4e-12 Score=145.98 Aligned_cols=216 Identities=14% Similarity=0.154 Sum_probs=137.4
Q ss_pred CCCCeEEEEEcCC------------CCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCC----CEEEEEEC
Q 001321 34 IPATASILAFDHI------------QRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQ----GFLISITN 96 (1100)
Q Consensus 34 ~~~~v~~la~sp~------------~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~----~~Lls~s~ 96 (1100)
|++.|+.+.|.|. +-+||++...|+|.|||.....+. -+.+|..+|..++|.+.. ..|++...
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ 133 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG 133 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence 4577888888762 347888888899999999655554 455667799999998843 47888899
Q ss_pred CCcEEEEEcCCCceeeeeecC-CCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCC--Ceeeeeceeeccc--ccc----
Q 001321 97 DNEIQVWSLESRSLACCLKWE-SNITAFSVISG-SHFMYIGDENGLMSVIKYDADE--GKLFQLPYNISAD--ALS---- 166 (1100)
Q Consensus 97 d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~--~~l~~~~~~i~~~--~~~---- 166 (1100)
.++|.+||..+|+.+..+... ....|+.++|- .+++.+-+..|.|.+.++-... ....+ .+.|... .++
T Consensus 134 ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk-~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 134 SSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK-EFQITSDHSDLAHLER 212 (1062)
T ss_pred CcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce-eEEEecCccchhhhhh
Confidence 999999999999999888544 45677999985 4667777778877666543211 00000 1223222 111
Q ss_pred -cccCCC-CCCCC------CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCcc
Q 001321 167 -EKAGFP-LLSHQ------PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 167 -~~~~~~-~~~~~------~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
...+.. ..... ....++|+|.. .+.+++.+..+. .++|++-...+.... ++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prel-lv~dle~~~~l~vvp---------ie---------- 271 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPREL-LVFDLEYECCLAVVP---------IE---------- 271 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccce-EEEcchhhceeEEEE---------ec----------
Confidence 011111 00001 12335678864 445888888876 689988765543321 11
Q ss_pred ccCCCCCCCCCCceEEEEEe-cCCCCEEEEEEcCCcEEEEecCC
Q 001321 239 LEGISEHQPEEKEISALCWA-SSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~-spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
++.+.=+.|. +|..+.+++++.||.+.+|-...
T Consensus 272 ----------r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 272 ----------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ----------cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 2222223333 34556799999999999997653
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.3e-12 Score=152.75 Aligned_cols=166 Identities=19% Similarity=0.340 Sum_probs=112.9
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee----cCCCeEEEEEecC--CCEEEEEeCCCcEEEEE-EecC-
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK----WESNITAFSVISG--SHFMYIGDENGLMSVIK-YDAD- 149 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~----~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~-~d~~- 149 (1100)
+-+.+.|+|-...+++++....|+|||++.++.+..+. ....|+.+.+... ..++++|+.||.|+||+ |...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 56778888877889999988899999999999987773 3367999988754 45899999999999998 3321
Q ss_pred -CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccccccccc
Q 001321 150 -EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1100)
Q Consensus 150 -~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~ 228 (1100)
.-++... +..++... +-.+ +.=.-+.|+-. .| +|++++.-..|+|||.....+..-.-.
T Consensus 1146 ~~~eLVTa-----w~~Ls~~~--~~~r-~~~~v~dWqQ~-~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~---------- 1205 (1387)
T KOG1517|consen 1146 KKPELVTA-----WSSLSDQL--PGAR-GTGLVVDWQQQ-SG-HLLVTGDVRSIRIWDAHKEQVVADIPY---------- 1205 (1387)
T ss_pred CCceeEEe-----eccccccC--ccCC-CCCeeeehhhh-CC-eEEecCCeeEEEEEecccceeEeeccc----------
Confidence 1122211 11111111 1111 11245567543 35 488888888999999987665433211
Q ss_pred CCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 229 ~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
+ ...-|+++.-....|+.|+.|+.||+|++||...
T Consensus 1206 ----~--------------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1206 ----G--------------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred ----C--------------CCccceeecccccCCceEEEeecCCceEEeeccc
Confidence 0 0455677664456789999999999999999864
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=4e-11 Score=136.56 Aligned_cols=141 Identities=14% Similarity=0.164 Sum_probs=94.2
Q ss_pred EEECCCcEEEEEcCC-Cc--eeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 93 SITNDNEIQVWSLES-RS--LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 93 s~s~d~~I~vWd~~s-~~--~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
+...++.|.+||+.+ ++ ++..+...+....++++|++++|+++. .++.|.+|+++ +.+.+... ..++.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~-~~~~~------ 78 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFA-AESPL------ 78 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEe-eeecC------
Confidence 335689999999974 43 445555667788999999999998875 47889999987 44554421 11110
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCCE-E---EEEecCCcccccccccCCCCCCCCccccCCC
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQ-I---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~-~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~ 243 (1100)
.+.+..++|+| ++++++++. .++.|.+|++.+.. + .....+
T Consensus 79 -------~~~p~~i~~~~--~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------------------- 124 (330)
T PRK11028 79 -------PGSPTHISTDH--QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG------------------------- 124 (330)
T ss_pred -------CCCceEEEECC--CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-------------------------
Confidence 03567899987 677666554 58899999997432 1 111100
Q ss_pred CCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEecCC
Q 001321 244 EHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1100)
Q Consensus 244 ~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~~~ 281 (1100)
.....++++ +|+|+++++++ .++.|.+||+.+
T Consensus 125 -----~~~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 125 -----LEGCHSANI-DPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred -----CCcccEeEe-CCCCCEEEEeeCCCCEEEEEEECC
Confidence 123455666 49999886554 569999999864
No 172
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.52 E-value=1.5e-12 Score=140.20 Aligned_cols=154 Identities=15% Similarity=0.068 Sum_probs=101.9
Q ss_pred CcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcce
Q 001321 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1100)
Q Consensus 495 ~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1100)
..++||++.|++.+|||+..-.-... + -+..-.|.-+|.+..|||++..|++.+.|..|+||+-.--..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s----p---~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa---- 403 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS----P---FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA---- 403 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC----c---ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc----
Confidence 34789999999999999864221100 0 033557889999999999999999999999999999751100
Q ss_pred eeeccCCCceeeccCCCcceeEEEEeecC----c--CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCC
Q 001321 575 LFVLETKSEVHALPEGKISLCRAVFSLVN----S--PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSS 648 (1100)
Q Consensus 575 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~----~--~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~ 648 (1100)
...+.+. ..|+ - .....+|.|+..++++|-.-..|-|+|-.+++.++..+. .-.
T Consensus 404 ---------------~~~p~~~---I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~--P~~ 463 (498)
T KOG4328|consen 404 ---------------KDEPLGT---IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD--PES 463 (498)
T ss_pred ---------------cCCccce---eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC--ccc
Confidence 0001111 1111 1 123457999999999999888899999999997744333 122
Q ss_pred CCeEEE-EEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 649 SPIISM-TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 649 ~~V~sl-~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
..|.++ +|.++.. .+++-++..|.|+||-..
T Consensus 464 ~tI~~vn~~HP~~~---------------------~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 464 STIPSVNEFHPMRD---------------------TLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccceeeccccc---------------------ceeccCCccceEEEEecC
Confidence 344443 4444332 245555678889988743
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3e-12 Score=149.76 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=112.7
Q ss_pred CCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCC--eeEEEEeeCCC-eEEEEecCceEEEEEecCCC
Q 001321 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP--VSTLSFCFINS-SLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 493 ~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~--Vt~lafspd~~-~Lasg~~dG~V~lw~l~~~~ 569 (1100)
..+++++.|..||+||+||......... . ...+.|+.. |..+.+-+.|. .|++|+.+|.|++||++...
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~-------v-~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSL-------V-CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS 1290 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCcccc-------c-eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc
Confidence 4477999999999999999876543200 0 124567666 99999999665 59999999999999999853
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEeecC--c-CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEe-e-cC
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN--S-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT-D-DI 644 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~--~-~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~-~-~~ 644 (1100)
.+. ......|- | ..|+|..++....+|+|+. +.|.||++.+..+.-.. + .+
T Consensus 1291 ~e~-----------------------~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1291 KET-----------------------FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred ccc-----------------------cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc
Confidence 221 12222332 4 6999999999999999998 89999999975443111 0 11
Q ss_pred CC-CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 645 SG-SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 645 ~~-~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
.+ ....+.+|.|.++- .+|++|..|..|.+|..+
T Consensus 1347 ~~q~~gs~scL~FHP~~----------------------~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHR----------------------LLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccCcCCCcceeeecchh----------------------HhhhhccCCceEEEeecC
Confidence 11 44567899998664 559999999999999844
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.4e-13 Score=151.69 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=99.4
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC--------ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--------SLACCL-KWESNITAFSVISGSHFMYIGDENGLM 141 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~--------~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V 141 (1100)
....|-..|++++|.+-...|++++.|++|.+|+++.. +.+.++ .|.++|.|+++.+.+.++++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 44568889999999999999999999999999999332 233444 899999999999999999999999999
Q ss_pred EEEEEecCCCeee-----eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE
Q 001321 142 SVIKYDADEGKLF-----QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 142 ~Iw~~d~~~~~l~-----~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
+.|++.......- ...-.+.+|. +.|+.+++|+. ..+|++++.||+|++|+..+...
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ght------------davw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHT------------DAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccc------------cceeeeeeccc--ccceeeecCCceEEeeccCCcCc
Confidence 9997763111000 0001233444 89999999885 45599999999999999877655
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.9e-14 Score=167.42 Aligned_cols=212 Identities=21% Similarity=0.290 Sum_probs=159.1
Q ss_pred eeecCCCCCeEEEEEcCCCCE----EEEEECCCeEEEEeCCCc------e-EEEeCCCCCCEEEEEEEeCCC-EEEEEEC
Q 001321 29 AVHYGIPATASILAFDHIQRL----LAIATLDGRIKVIGGDGI------E-GLLISPSQLPYKNLEFLQNQG-FLISITN 96 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~l----LA~gs~dG~I~vw~~~~~------~-~~~~~~h~~~V~~l~fs~d~~-~Lls~s~ 96 (1100)
+..+-...+-..|+|.+.+.. ||.|.+||.|.+|+.... + +.....|+++|..|.|++.++ .|+++++
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 333445667789999988765 999999999999998542 1 224567999999999999877 8999999
Q ss_pred CCcEEEEEcCCCceee---eeecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 97 DNEIQVWSLESRSLAC---CLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 97 d~~I~vWd~~s~~~l~---~~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
||.|.|||+..-+.-. .....+.|.|++|+..-. .|++|+.+|.+.|||++..+ .++. +..+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~----ls~~~-------- 204 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIK----LSDTP-------- 204 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccc----cccCC--------
Confidence 9999999998743222 234568899999997754 57888899999999998532 1221 21111
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEEcCC---EEEEEEccCCE-EE-EEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQ-II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~~dg---~V~lwdl~~~~-~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
....+..|+|||. .-+++++++.|. .|.+||++... .+ .+.+|
T Consensus 205 --~~~~~S~l~WhP~-~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H----------------------------- 252 (1049)
T KOG0307|consen 205 --GRMHCSVLAWHPD-HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH----------------------------- 252 (1049)
T ss_pred --CccceeeeeeCCC-CceeeeeecCCCCCceeEeecccccCCchhhhccc-----------------------------
Confidence 0145889999997 455688777765 88999987653 22 33456
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~ 286 (1100)
...|.++.|...|..++++++.|+.|.+|+.++++...
T Consensus 253 -~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 253 -QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred -ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 88899999975555899999999999999999875443
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=8.2e-14 Score=165.52 Aligned_cols=173 Identities=20% Similarity=0.324 Sum_probs=116.7
Q ss_pred eEEEEEcCCCC-EEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC--CC----ce
Q 001321 38 ASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SR----SL 110 (1100)
Q Consensus 38 v~~la~sp~~~-lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~--s~----~~ 110 (1100)
-..+||+|.+. +||+|+.-|. +=.+-+.+.++.+|.+. .. +.
T Consensus 9 ta~~awSp~~~~~laagt~aq~-------------------------------~D~sfst~~slEifeld~~~~~~dlk~ 57 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQ-------------------------------FDASFSTSASLEIFELDFSDESSDLKP 57 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhc-------------------------------cccccccccccceeeecccCccccccc
Confidence 34578888887 7888875431 11122334555555442 22 34
Q ss_pred eeeeecCCCeEEEEEecCCCE----EEEEeCCCcEEEEEEecC--CCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 111 ACCLKWESNITAFSVISGSHF----MYIGDENGLMSVIKYDAD--EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~~----l~~G~~dG~V~Iw~~d~~--~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
...+....+-..++|.+.+.. ++.|.+||.|-+|+-+.. .... ..+.....|.++|.++.|
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-------------~~la~~~~h~G~V~gLDf 124 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-------------EVLATKSKHTGPVLGLDF 124 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-------------HHHhhhcccCCceeeeec
Confidence 455556677888999887765 889999999999987641 1111 111122344599999999
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
+|. .++.|++|..+|.|.|||+..-+.-...+. + .....|.++.|.-.....
T Consensus 125 N~~-q~nlLASGa~~geI~iWDlnn~~tP~~~~~-------~--------------------~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 125 NPF-QGNLLASGADDGEILIWDLNKPETPFTPGS-------Q--------------------APPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred ccc-CCceeeccCCCCcEEEeccCCcCCCCCCCC-------C--------------------CCcccceEeccchhhhHH
Confidence 986 566799999999999999987432222211 1 117789999998656677
Q ss_pred EEEEEcCCcEEEEecCCC
Q 001321 265 LAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1100)
|++++.+|...+||++..
T Consensus 177 LAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred hhccCCCCCceeccccCC
Confidence 889999999999999744
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.4e-12 Score=135.05 Aligned_cols=165 Identities=16% Similarity=0.251 Sum_probs=124.7
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC------Cceeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES------RSLACCL--KWESNITAFSVISGSHFMYIGDENGLMS 142 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s------~~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~ 142 (1100)
-..+|.+.|.++.|+.++++|++++.|..++||+++. .+.+..+ .|...|.|++|+....++++|..+|+|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3568999999999999999999999999999999853 2445555 4558999999999999999999999997
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE----EEEEecC
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ----IIFVGGG 218 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~----~~~~~~~ 218 (1100)
..++.+ .+.. |.+ +|.- ..+.|..+..||. +.+ +++.+.++.|.+||..... +++.-.+
T Consensus 131 ~HDiEt--~qsi---~V~-~~~~---------~~~~VY~m~~~P~-DN~-~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 131 KHDIET--KQSI---YVA-NENN---------NRGDVYHMDQHPT-DNT-LIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred eeeccc--ceee---eee-cccC---------cccceeecccCCC-Cce-EEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 777664 2222 222 2220 1178999999997 444 9999999999999998753 2222111
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+...++-|+...-.+|++....|-+-+||+...
T Consensus 194 ------------------------------~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 194 ------------------------------GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred ------------------------------CccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 5667777776334467888899999999998754
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.50 E-value=6.7e-12 Score=133.44 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=131.4
Q ss_pred ceeeeecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCC----c---eEE---EeCCCCCCEEEEEEEeCCCEEEEE
Q 001321 26 LRIAVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDG----I---EGL---LISPSQLPYKNLEFLQNQGFLISI 94 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~----~---~~~---~~~~h~~~V~~l~fs~d~~~Lls~ 94 (1100)
++...| -...+..+.|.++.. .||+|+.|..||||.... . .+. .+..|...|+.++|+|+|..|+|+
T Consensus 6 ~ei~wH--~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg 83 (434)
T KOG1009|consen 6 IEISWH--DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG 83 (434)
T ss_pred eEEEec--CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec
Confidence 344555 355788899998887 999999999999997622 1 122 456799999999999999999999
Q ss_pred ECCCcEEEEEcC--------C-----C---ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001321 95 TNDNEIQVWSLE--------S-----R---SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1100)
Q Consensus 95 s~d~~I~vWd~~--------s-----~---~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~ 157 (1100)
+.++.|.+|-.. + + ...... .|...|..++|+|++.++++|+-|.++++|++.. |.+...
T Consensus 84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~--G~l~~~- 160 (434)
T KOG1009|consen 84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA--GQLLAI- 160 (434)
T ss_pred CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc--ceeEee-
Confidence 999999999866 3 1 112222 5678899999999999999999999999999875 555532
Q ss_pred eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
+..|. ..|..++|.| .+.++++-+.|...+.+++...+.++..
T Consensus 161 --~~dh~------------~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 161 --LDDHE------------HYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred --ccccc------------cccceeecch--hhhhhhhhccCcccceeeeeeeeeeeee
Confidence 45555 7899999977 5667888888886677777666555443
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.50 E-value=2.6e-12 Score=149.70 Aligned_cols=271 Identities=17% Similarity=0.147 Sum_probs=164.9
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~ 256 (1100)
..|+++.|+|. +..+++.|..+|.|.+||+..+.-....+ ++ . ....+...++.++
T Consensus 243 s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-----ls---------~---------~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 243 SEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSG-----LS---------A---------LEVSHSEPVTAVV 298 (555)
T ss_pred CceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcc-----cc---------c---------ccccCCcCeEEEE
Confidence 78999999998 56669999999999999998764311000 00 0 0012277899999
Q ss_pred EecCCCCE--EEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeC
Q 001321 257 WASSSGSI--LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGG 334 (1100)
Q Consensus 257 w~spdg~~--l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg 334 (1100)
|. .+-.. +++++.||.|..|++..-..+.. .+..... .+ ..
T Consensus 299 W~-~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e----------~~~~~~~--------~~-~~----------------- 341 (555)
T KOG1587|consen 299 WL-QNEHNTEFFSLSSDGSICSWDTDMLSLPVE----------GLLLESK--------KH-KG----------------- 341 (555)
T ss_pred Ee-ccCCCCceEEEecCCcEeeeeccccccchh----------hcccccc--------cc-cc-----------------
Confidence 97 45444 99999999999998764422211 0000000 00 00
Q ss_pred CCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeec
Q 001321 335 DEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQ 414 (1100)
Q Consensus 335 ~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~ 414 (1100)
...........+.+.+. +|..+++.++.|.++.........
T Consensus 342 ----------------------------~~~~~~~~~t~~~F~~~-------~p~~FiVGTe~G~v~~~~r~g~~~---- 382 (555)
T KOG1587|consen 342 ----------------------------QQSSKAVGATSLKFEPT-------DPNHFIVGTEEGKVYKGCRKGYTP---- 382 (555)
T ss_pred ----------------------------cccccccceeeEeeccC-------CCceEEEEcCCcEEEEEeccCCcc----
Confidence 00001112223334343 567788999999988743111100
Q ss_pred cCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCC
Q 001321 415 QEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV 494 (1100)
Q Consensus 415 ~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~ 494 (1100)
.......+. .....|.+.+.++.++|.
T Consensus 383 -----~~~~~~~~~------------------------------------------------~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 383 -----APEVSYKGH------------------------------------------------STFITHIGPVYAVSRNPF 409 (555)
T ss_pred -----ccccccccc------------------------------------------------ccccccCcceEeeecCCC
Confidence 000000000 011122233344456666
Q ss_pred CcEEEEEecCCcEEEeeCCC-CceeEEeeeccceeeeeecCCCCCeeEEEEeeCC-CeEEEEecCceEEEEEecCCCCCc
Q 001321 495 DRVYLAGYHDGSVRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAK 572 (1100)
Q Consensus 495 ~~~l~Tg~~DGtIriWd~~~-~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~~~~~~ 572 (1100)
...++....|.+||||.-.. .... ..+..+...|++++|||-. ..+++++.+|.+.|||+.....+
T Consensus 410 ~~k~fls~gDW~vriWs~~~~~~Pl-----------~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~- 477 (555)
T KOG1587|consen 410 YPKNFLSVGDWTVRIWSEDVIASPL-----------LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE- 477 (555)
T ss_pred ccceeeeeccceeEeccccCCCCcc-----------hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC-
Confidence 65555555599999998662 2211 1234555569999999965 56788888999999999876432
Q ss_pred ceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCC
Q 001321 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 573 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~ 634 (1100)
++.....+....+.+.|++.|++|++|+..|++.+|++..
T Consensus 478 ----------------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 ----------------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ----------------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3333344466677888999999999999999999999963
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.49 E-value=8.6e-13 Score=132.40 Aligned_cols=153 Identities=25% Similarity=0.283 Sum_probs=118.4
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeecc--ceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcce
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDA--EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~--~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1100)
+++.|+++|.|-+||++.+... ..++. ++. .....|..+|.++.|.+.-..=++|+.+..+..|.++.......
T Consensus 167 lllaGyEsghvv~wd~S~~~~~--~~~~~~~kv~-~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq- 242 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKI--IQLPQSSKVE-SPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ- 242 (323)
T ss_pred EEEEeccCCeEEEEEccCCcee--eccccccccc-cchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc-
Confidence 7889999999999999987422 22222 111 23568999999999998777778899999999999987532110
Q ss_pred eeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEE
Q 001321 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1100)
Q Consensus 575 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl 654 (1100)
........+-.|..+.+-||++.+|+++.||.++||..++...+ ..+.-|+..|.++
T Consensus 243 --------------------~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyHsagvn~v 299 (323)
T KOG0322|consen 243 --------------------IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYHSAGVNAV 299 (323)
T ss_pred --------------------ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhhhcceeEE
Confidence 11222334455888999999999999999999999999988776 3444599999999
Q ss_pred EEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 655 ~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
+|++. ..+++.+++|++|.+|+
T Consensus 300 Afspd----------------------~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 300 AFSPD----------------------CELMAAASKDARISLWK 321 (323)
T ss_pred EeCCC----------------------CchhhhccCCceEEeee
Confidence 99843 46799999999999998
No 181
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=5.2e-13 Score=143.25 Aligned_cols=211 Identities=14% Similarity=0.167 Sum_probs=161.4
Q ss_pred eeeeecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeC-CCEEEEEECCCcEEEE
Q 001321 27 RIAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQN-QGFLISITNDNEIQVW 103 (1100)
Q Consensus 27 ~~~~~~G~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d-~~~Lls~s~d~~I~vW 103 (1100)
+...--||...|-.|++.-. .++||+|+.|.+|++||++..+.... ..|...|.+++|.|. ..+|++++.|++|.+.
T Consensus 235 ~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 235 RSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK 314 (463)
T ss_pred cccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence 33455688888988998864 57899999999999999976666544 458889999999984 5789999999999999
Q ss_pred EcCCC-ceeeeeecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001321 104 SLESR-SLACCLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 104 d~~s~-~~l~~~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1100)
|.+.- ..-......+.|-.++|+|... .++++..||+|+-+|..... +. .|.+..|. ++|.+
T Consensus 315 D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~---vwt~~AHd------------~~ISg 378 (463)
T KOG0270|consen 315 DCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KP---VWTLKAHD------------DEISG 378 (463)
T ss_pred eccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-Cc---eeEEEecc------------CCcce
Confidence 99853 2233447779999999999875 67788899998777766543 22 26688887 89999
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
|.+++...+ ++.+++.+++|.+|++..........| .+. -++..|.++ +|+
T Consensus 379 l~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~~-------~~~--------------------~~rl~c~~~-~~~ 429 (463)
T KOG0270|consen 379 LSVNIQTPG-LLSTASTDKVVKLWKFDVDSPKSVKEH-------SFK--------------------LGRLHCFAL-DPD 429 (463)
T ss_pred EEecCCCCc-ceeeccccceEEEEeecCCCCcccccc-------ccc--------------------ccceeeccc-CCC
Confidence 999887555 499999999999999987765544444 111 334455553 354
Q ss_pred C-CEEEEEEcCCcEEEEecCCC
Q 001321 262 G-SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g-~~l~sg~~DG~I~lWd~~~~ 282 (1100)
- -+++.|+..+.+++||+.+.
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceEEEecCccceEEEeecccC
Confidence 4 46788888889999999766
No 182
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.49 E-value=3.5e-12 Score=131.92 Aligned_cols=232 Identities=11% Similarity=0.105 Sum_probs=159.8
Q ss_pred cccceeeeecCCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEeCCCce--EE----EeCCCCCCEEEEEEEeC----
Q 001321 23 DLNLRIAVHYGIPATASILAFDHI-----QRLLAIATLDGRIKVIGGDGIE--GL----LISPSQLPYKNLEFLQN---- 87 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~-----~~lLA~gs~dG~I~vw~~~~~~--~~----~~~~h~~~V~~l~fs~d---- 87 (1100)
.|.+....+-+++..|-.++|++- -..+|+.+ ..++.+|...+.- .+ .-..|....-.++|+-|
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 355555555678889999999842 23344443 4688888763322 22 22246666777777653
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~ 165 (1100)
..+|+.++.-|.|+|.|+.++++...+ .|.+.|..+.+.|+. +++++++.|.+|++|++..+.....- --+.+|.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf--GG~egHr- 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF--GGVEGHR- 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe--ccccccc-
Confidence 368999999999999999999988777 888999999999987 68899999999999999875433331 1233444
Q ss_pred ccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE----EecCCcccccccccCCCCCCCCccccC
Q 001321 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF----VGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1100)
Q Consensus 166 ~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~----~~~~~~~~~~~~l~~~~~g~~~~~g~~ 241 (1100)
+.|.++.|++ +|.++++++.|-.+.+|++...+... .+.+..-.....++ .+.-.=..
T Consensus 182 -----------deVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp-----t~~~~fp~ 243 (385)
T KOG1034|consen 182 -----------DEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP-----TPKTHFPD 243 (385)
T ss_pred -----------CcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC-----cccccccc
Confidence 8999999988 67789999999999999998654321 11110000000000 00011112
Q ss_pred CCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 242 ~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
++....+...|.|+.|+ |+++++-+-+|.|..|..
T Consensus 244 fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKP 278 (385)
T ss_pred ccccccccchHHHHHHH---hhheeecccCceEEEEec
Confidence 33445568899999998 799999999999999976
No 183
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.47 E-value=5.9e-13 Score=143.74 Aligned_cols=201 Identities=10% Similarity=0.179 Sum_probs=163.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
...|++......++++|+..|.|+|||++...+. .+.+|+..|++|.+.....||++++..|.|.|-.+.++...+.+.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 5567777777799999999999999999755443 678999999999999988999999999999999999999988887
Q ss_pred cC-C-CeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 116 WE-S-NITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 116 ~~-~-~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
++ + .|.-+.+++..+ +|.+++.+|.|.+||+......+. ....| ..+...|.|+|. +..+
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~----~~~~H------------sAP~~gicfsps-ne~l 223 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH----ASEAH------------SAPCRGICFSPS-NEAL 223 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc----hhhhc------------cCCcCcceecCC-ccce
Confidence 76 4 466899999876 466788999999999874321111 12222 278889999998 5556
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
|++.+.|..|.+||....+......+ ..+.++++|. ++|.+|+.|...|
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~y------------------------------~~Plstvaf~-~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLTY------------------------------SHPLSTVAFS-ECGTYLCAGNSKG 272 (673)
T ss_pred EEEecccceEEEeecccccccceeee------------------------------cCCcceeeec-CCceEEEeecCCc
Confidence 88999999999999998766554444 6678889974 9999999999999
Q ss_pred cEEEEecCCCCCC
Q 001321 273 DILLWNTSTTAST 285 (1100)
Q Consensus 273 ~I~lWd~~~~~~~ 285 (1100)
.|..||+.....+
T Consensus 273 ~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 273 ELIAYDMRSTKAP 285 (673)
T ss_pred eEEEEecccCCCC
Confidence 9999999866443
No 184
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.47 E-value=7.9e-12 Score=128.86 Aligned_cols=118 Identities=13% Similarity=0.278 Sum_probs=82.5
Q ss_pred EEEEEEEeCCCEEEEEECCCcEEEEEcCCCc--------------eeeeeecCCCeEEEEEe-------cCCCEEEEEeC
Q 001321 79 YKNLEFLQNQGFLISITNDNEIQVWSLESRS--------------LACCLKWESNITAFSVI-------SGSHFMYIGDE 137 (1100)
Q Consensus 79 V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~--------------~l~~~~~~~~Vt~~~~s-------~~~~~l~~G~~ 137 (1100)
.+...|+|||..+++-+.|+.+.+|++...- ....+.....|...+|- |+..++++.++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 5678899999999999999999999984321 12223444567766665 67789999999
Q ss_pred CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEc-cCCE
Q 001321 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV-SEAQ 211 (1100)
Q Consensus 138 dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl-~~~~ 211 (1100)
+.-|++|+.-+ |++... |+--.|. . ...+-.+++|+| +|..|++|+.. .|++||+ +.|+
T Consensus 132 ~~PIh~wdaft--G~lraS-y~~ydh~--d-------e~taAhsL~Fs~--DGeqlfaGykr-cirvFdt~RpGr 191 (406)
T KOG2919|consen 132 DQPIHLWDAFT--GKLRAS-YRAYDHQ--D-------EYTAAHSLQFSP--DGEQLFAGYKR-CIRVFDTSRPGR 191 (406)
T ss_pred cCceeeeeccc--cccccc-hhhhhhH--H-------hhhhheeEEecC--CCCeEeecccc-eEEEeeccCCCC
Confidence 99999999654 555432 3332221 1 014568999987 89966666655 5699998 4443
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9.7e-13 Score=141.00 Aligned_cols=199 Identities=16% Similarity=0.162 Sum_probs=150.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec-
Q 001321 39 SILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW- 116 (1100)
Q Consensus 39 ~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~- 116 (1100)
-++||+.+++.||+|..||.+|||+.+.. ..+.+..|...|.+|.|+|||.+|++++.| ..+||+++++-.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 68999999999999999999999996554 455678899999999999999999999999 999999999966555532
Q ss_pred --CCCeEEEEEecCC-----CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 117 --ESNITAFSVISGS-----HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 117 --~~~Vt~~~~s~~~-----~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+.....+.|+.+. ...+.-...+.|+.|++..-.+.-. ++... ...+...|.+++.++ +
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~-----l~~~~-------~~~~~~siSsl~VS~--d 292 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF-----LRLRK-------KIKRFKSISSLAVSD--D 292 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc-----cchhh-------hhhccCcceeEEEcC--C
Confidence 2346677777665 2223333456677766554222100 01000 011226799999944 8
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
|++++.|..+|.|.|++..+-+...+..+ .| ...|+.+.| +|+.+.+++.+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~--------aH--------------------~~~VT~ltF-~Pdsr~~~svS 343 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVKE--------AH--------------------LGFVTGLTF-SPDSRYLASVS 343 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeehh--------hh--------------------eeeeeeEEE-cCCcCcccccc
Confidence 99999999999999999988877766532 33 778999997 59999999999
Q ss_pred cCCcEEEEecCC
Q 001321 270 IDGDILLWNTST 281 (1100)
Q Consensus 270 ~DG~I~lWd~~~ 281 (1100)
.|....+-.+.-
T Consensus 344 s~~~~~v~~l~v 355 (398)
T KOG0771|consen 344 SDNEAAVTKLAV 355 (398)
T ss_pred cCCceeEEEEee
Confidence 999999887753
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=155.32 Aligned_cols=159 Identities=14% Similarity=0.251 Sum_probs=124.7
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
+.+|..+|-|+.|...|.++++++.|.-++||..++..++.+. .|.+.|+.++++...-++++++.|..|+||.+..
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-- 263 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-- 263 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC--
Confidence 4579999999999999999999999999999999999888777 8999999999999999999999999999999874
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCC
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~ 230 (1100)
+..... +.+|. ++|++|+|+|. .+.+.||++++||.+-.-.+..
T Consensus 264 ~~pvsv---Lrght------------gavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~--------------- 307 (1113)
T KOG0644|consen 264 GAPVSV---LRGHT------------GAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYV--------------- 307 (1113)
T ss_pred CchHHH---Hhccc------------cceeeeccCcc------ccCCCCCceEeccccccccccC---------------
Confidence 333322 66666 99999999994 4778999999999981111100
Q ss_pred CCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 231 ~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
+-++...+ ...+.++.+ +.++..++||+.|+.-..|..
T Consensus 308 -prp~~~~~---------~~~~~s~~~-~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 308 -PRPLKFTE---------KDLVDSILF-ENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred -CCCCCccc---------ccceeeeec-cccccccccccCCcccccchh
Confidence 11222222 455666665 477888888888887777754
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=6.5e-11 Score=134.81 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=123.4
Q ss_pred EEEECCCeEEEEeCCC-c--eEEEeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcC-CCce--eeeeecCCCeEEE
Q 001321 51 AIATLDGRIKVIGGDG-I--EGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLE-SRSL--ACCLKWESNITAF 123 (1100)
Q Consensus 51 A~gs~dG~I~vw~~~~-~--~~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~-s~~~--l~~~~~~~~Vt~~ 123 (1100)
++...++.|++|+.+. . +.+...++.+....++|+|++.+|++++ .++.|.+|++. ++++ +......+....+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 4446689999999952 2 2333344556788899999999987765 57889999997 3433 2333444567899
Q ss_pred EEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEE-EEcCCE
Q 001321 124 SVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI-AYENAL 201 (1100)
Q Consensus 124 ~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~-~~~dg~ 201 (1100)
+++|++++++++.. ++.|.+|+++.++ .+......+++ ...+.+++++| +++++++ ...++.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~-------------~~~~~~~~~~p--~g~~l~v~~~~~~~ 149 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDG-IPVAPIQIIEG-------------LEGCHSANIDP--DNRTLWVPCLKEDR 149 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCC-CCCCceeeccC-------------CCcccEeEeCC--CCCEEEEeeCCCCE
Confidence 99999999998874 7889999987432 22110011111 13467788988 6776754 455689
Q ss_pred EEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc-CCcEEEEec
Q 001321 202 VILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNT 279 (1100)
Q Consensus 202 V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~-DG~I~lWd~ 279 (1100)
|.+||+.+...+. ...+ ... .+ . ......+.|. |+|++++++.. +++|.+|++
T Consensus 150 v~v~d~~~~g~l~~~~~~-------~~~-----~~--~----------g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPA-------EVT-----TV--E----------GAGPRHMVFH-PNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred EEEEEECCCCcccccCCC-------cee-----cC--C----------CCCCceEEEC-CCCCEEEEEecCCCEEEEEEE
Confidence 9999998633211 1000 000 00 0 1123456765 99999988877 899999998
Q ss_pred C
Q 001321 280 S 280 (1100)
Q Consensus 280 ~ 280 (1100)
.
T Consensus 205 ~ 205 (330)
T PRK11028 205 K 205 (330)
T ss_pred e
Confidence 5
No 188
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=3.4e-12 Score=129.60 Aligned_cols=223 Identities=13% Similarity=0.149 Sum_probs=156.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE----E---EeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEEEEcC
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG----L---LISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~----~---~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd~~ 106 (1100)
++|.|+.|.|++.-||+-. |..|.+|+++.... + ...+|....+.-+|+| |+.. +....|+++..||++
T Consensus 124 g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq-v~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ-VATTSDSTLQFWDLR 201 (370)
T ss_pred CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce-EEEeCCCcEEEEEcc
Confidence 4899999999999998776 89999999955432 1 2234566788889998 4444 445569999999999
Q ss_pred CCceeeee--ecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 107 SRSLACCL--KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 107 s~~~l~~~--~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
+.....++ .|...|..+.|+|+.+ +|+++++||.|+|||.....-.+ +.+++|. ..|++|.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv----~el~~Hs------------HWvW~VR 265 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV----QELPGHS------------HWVWAVR 265 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc----cccCCCc------------eEEEEEE
Confidence 98777666 6667899999999986 57888999999999987422222 3466666 8899999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCE--EEEEecCCcccccccccCCCCCCCC-ccccCCCCCCCCCCceEEEEEecC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDS-TFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~-~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
|+|..+. +++++++|..|.+|...+-. ....+++...... -..+ ....+ -..+.+..-..++..|.+++|.+.
T Consensus 266 fn~~hdq-LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e--~~ds-eer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 266 FNPEHDQ-LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE--DEDS-EERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred ecCccce-EEEecCCCceeEEEeccccccccccccccccccCc--chhh-HHhcccccccccccccccccceEEEeeccC
Confidence 9998665 59999999999999876532 2222222110000 0000 00000 001111122234889999999999
Q ss_pred CCCEEEEEEcCCcEEEEecC
Q 001321 261 SGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~ 280 (1100)
|-..+++-+.||.+.+=++.
T Consensus 342 dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCeeEEEeccCceEEeecCC
Confidence 99999999999999886654
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.44 E-value=9.9e-12 Score=131.35 Aligned_cols=164 Identities=17% Similarity=0.255 Sum_probs=124.7
Q ss_pred CeEEEEEcC-----CCCEEEEEEC---CCeEEEEeCCCc-----eEEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEE
Q 001321 37 TASILAFDH-----IQRLLAIATL---DGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQV 102 (1100)
Q Consensus 37 ~v~~la~sp-----~~~lLA~gs~---dG~I~vw~~~~~-----~~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~v 102 (1100)
+|+-.+||. +.++||+-.+ .|...|..+... ..-+..+|+++|-.+.|+| |...++|++.|.+|.|
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~v 108 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMV 108 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEE
Confidence 455566653 4577777543 356666665322 3346778999999999999 4467888888999999
Q ss_pred EEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 103 Wd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
|.+..+.+...+..+ | ..+.+|. ..|-.|
T Consensus 109 W~IPe~~l~~~ltep-----------------------v----------------v~L~gH~------------rrVg~V 137 (472)
T KOG0303|consen 109 WQIPENGLTRDLTEP-----------------------V----------------VELYGHQ------------RRVGLV 137 (472)
T ss_pred EECCCcccccCcccc-----------------------e----------------EEEeecc------------eeEEEE
Confidence 998776544332110 0 1255666 779999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
+|||.+..- |++++.|.+|.+||+.+++......| +..|.+++|. .||
T Consensus 138 ~wHPtA~NV-Llsag~Dn~v~iWnv~tgeali~l~h------------------------------pd~i~S~sfn-~dG 185 (472)
T KOG0303|consen 138 QWHPTAPNV-LLSAGSDNTVSIWNVGTGEALITLDH------------------------------PDMVYSMSFN-RDG 185 (472)
T ss_pred eecccchhh-HhhccCCceEEEEeccCCceeeecCC------------------------------CCeEEEEEec-cCC
Confidence 999986554 99999999999999999988766667 8889999986 999
Q ss_pred CEEEEEEcCCcEEEEecCCCC
Q 001321 263 SILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
..+++.|.|..|++||..+++
T Consensus 186 s~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred ceeeeecccceeEEEcCCCCc
Confidence 999999999999999998874
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=1.5e-11 Score=127.06 Aligned_cols=222 Identities=12% Similarity=0.141 Sum_probs=167.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce----EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc-CCC
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL-ESR 108 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~-~s~ 108 (1100)
....|+|.||++|...+|++.....|+||...+.. ...+..|...|+.+.|+|...++++|+.|..-.||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46789999999999999999999999999885544 4467889999999999999999999999999999998 444
Q ss_pred c---eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 109 S---LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 109 ~---~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
+ .+..+.++..++|+.|+|..+.+++|+....|.||-|+.+..=- +..|. .++....|.++.||
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW------VsKhi-------kkPirStv~sldWh 155 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW------VSKHI-------KKPIRSTVTSLDWH 155 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee------hhhhh-------CCccccceeeeecc
Confidence 3 35556889999999999999999999999999999998654321 11111 11122789999999
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
| ++-+++.|+.|+.+++|+.-=..+-..- .-+|-|....+|...+.-....+.|..++|. |.|..|
T Consensus 156 p--nnVLlaaGs~D~k~rVfSayIK~Vdekp-----------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~l 221 (361)
T KOG1523|consen 156 P--NNVLLAAGSTDGKCRVFSAYIKGVDEKP-----------APTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRL 221 (361)
T ss_pred C--CcceecccccCcceeEEEEeeeccccCC-----------CCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEe
Confidence 9 5777899999999999974211111000 0011122222333222222337889999985 999999
Q ss_pred EEEEcCCcEEEEecCCC
Q 001321 266 AVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~~ 282 (1100)
+=.+.|+.+.+=|....
T Consensus 222 awv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eEecCCCceEEeecCCC
Confidence 99999999999887654
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.9e-12 Score=142.96 Aligned_cols=224 Identities=19% Similarity=0.247 Sum_probs=166.8
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---------ceEEEeCCCCCCEEEEEEEeCCCEEEEE
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---------IEGLLISPSQLPYKNLEFLQNQGFLISI 94 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~---------~~~~~~~~h~~~V~~l~fs~d~~~Lls~ 94 (1100)
+++....++ +...|.+++|.|....|++|+.||.|++|+++. .....+.+|.+||-|+++..++.++.++
T Consensus 284 w~ik~tl~s-~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 284 WNIKFTLRS-HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred cceeeeeec-chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence 555565543 677899999999999999999999999999821 2345778999999999999999999999
Q ss_pred ECCCcEEEEEcCCC----------ceeee-eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee------c
Q 001321 95 TNDNEIQVWSLESR----------SLACC-LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL------P 157 (1100)
Q Consensus 95 s~d~~I~vWd~~s~----------~~l~~-~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~------~ 157 (1100)
+.||+|+.|++... .+... ..|.+.|+.+++++....|+..+.||+|+.|++....-..... |
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 99999999976422 22233 3788999999999999999999999999999976532200000 0
Q ss_pred --eeec----cccc----------------ccccCCC---CC---CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC
Q 001321 158 --YNIS----ADAL----------------SEKAGFP---LL---SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 158 --~~i~----~~~~----------------~~~~~~~---~~---~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
+.+. .|.+ +....++ .+ ....+.-|.+||. +.+.+++-.|+.|+++|..+
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~--~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT--ADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC--CCeeEecccCCceecccccc
Confidence 0000 0000 0000011 01 1245777888885 46689999999999999999
Q ss_pred CEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 210 AQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
+.++... .| ...+++++.. |+|-+|++++.||++++|.+..
T Consensus 521 ~~~l~s~~a~------------------------------~~svtslai~-~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 521 GKILHSMVAH------------------------------KDSVTSLAID-PNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cccchheeec------------------------------cceecceeec-CCCceEEeecCCceeehhhccc
Confidence 9876432 22 6789999976 9999999999999999999854
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.42 E-value=3.4e-11 Score=122.38 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=111.5
Q ss_pred CCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCC-eEEEEecCceEEEEEecCCCC
Q 001321 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNGSLD 570 (1100)
Q Consensus 492 s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~-~Lasg~~dG~V~lw~l~~~~~ 570 (1100)
+++++.++|. .|++++.||+.+.... +. + -..|...|..|.|.|+-+ +||++++||.|+|||.+....
T Consensus 181 HHdgnqv~tt-~d~tl~~~D~RT~~~~--~s-------I-~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~ 249 (370)
T KOG1007|consen 181 HHDGNQVATT-SDSTLQFWDLRTMKKN--NS-------I-EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF 249 (370)
T ss_pred CCccceEEEe-CCCcEEEEEccchhhh--cc-------h-hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc
Confidence 3566677754 5899999999865522 11 1 346778899999999876 588999999999999987532
Q ss_pred CcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC-CEEEEEeCCceEEEEecCCce----E--------
Q 001321 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-AKLAVGFECGRVAVLDMNLLS----V-------- 637 (1100)
Q Consensus 571 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-~~LavGs~dG~V~vwD~~~~~----~-------- 637 (1100)
++..+..|...|+++.|+|.. ++|.+|+.|..|.+|....-. +
T Consensus 250 ------------------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese 305 (370)
T KOG1007|consen 250 ------------------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE 305 (370)
T ss_pred ------------------------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc
Confidence 467778999999999999965 678899999999999643211 0
Q ss_pred ------------EEE--eecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 638 ------------LFF--TDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 638 ------------~~~--~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
+.. ...+..|...|.+++|+... .-+.++.+.||.|.+=.
T Consensus 306 ~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad---------------------PWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 306 SEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD---------------------PWIFASLSYDGRVIISS 359 (370)
T ss_pred CcchhhHHhcccccccccccccccccceEEEeeccCC---------------------CeeEEEeccCceEEeec
Confidence 100 11233588999999999332 24577788999998765
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.38 E-value=7.9e-11 Score=137.40 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=126.5
Q ss_pred CeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCC-EEEEEECCCcEEEEEcCCCce--e-----eeeecCCCeEEEEEec
Q 001321 57 GRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSL--A-----CCLKWESNITAFSVIS 127 (1100)
Q Consensus 57 G~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~~s~~~--l-----~~~~~~~~Vt~~~~s~ 127 (1100)
+.+.||++... ..-....-..+|.++.|+|... +|+.++.+|.|.+||++.+.. . ....|...++++.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 57999999554 4445566678999999999554 555666799999999988765 2 2226778899999986
Q ss_pred CCCE--EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEE
Q 001321 128 GSHF--MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1100)
Q Consensus 128 ~~~~--l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lw 205 (1100)
+-.- +++++.||.|..|+.+........ +..... ...+........++++.|+|. +..++++|.+.|.|..=
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~----~~~~~~-~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEG----LLLESK-KHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKG 375 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhh----cccccc-cccccccccccceeeEeeccC-CCceEEEEcCCcEEEEE
Confidence 6544 899999999999987642111110 000000 001112233467999999998 45569999999987653
Q ss_pred EccCCEE---EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 206 DVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 206 dl~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+....+. +.+.+|... . .+.+.|.++-|. |-+..++..+.|-++++|.-.
T Consensus 376 ~r~g~~~~~~~~~~~~~~~----~--------------------~h~g~v~~v~~n-PF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTF----I--------------------THIGPVYAVSRN-PFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred eccCCcccccccccccccc----c--------------------ccCcceEeeecC-CCccceeeeeccceeEecccc
Confidence 3332221 112222111 1 127889999975 888766666669999999764
No 194
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=148.35 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=128.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
.||-..|.|.+||..|.++.+|++|.-++||......++ ...+|.+.|+.++.+.+..++++++.|..|+||-+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 477888999999999999999999999999998665544 5679999999999999989999999999999999999999
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+..+ .|++.||+++|+|.. +.+.||++++|+++.+.......|.++.. ..-+.++.| ...
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~-------------~~~~~s~~~--~~~ 327 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTE-------------KDLVDSILF--ENN 327 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccc-------------ccceeeeec--ccc
Confidence 8877 899999999999977 67789999999998432222211122221 156888888 557
Q ss_pred CCEEEEEEcCCEEEEEEc
Q 001321 190 GNRVLIAYENALVILWDV 207 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl 207 (1100)
+..+++++.++.-..|.+
T Consensus 328 ~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred ccccccccCCcccccchh
Confidence 888999999998766654
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=5e-11 Score=140.18 Aligned_cols=175 Identities=14% Similarity=0.185 Sum_probs=125.7
Q ss_pred CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEE
Q 001321 56 DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1100)
Q Consensus 56 dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l 132 (1100)
+..|+|||.++.....+..|..++..++|+|||.+|+.++.+ ..|.+||+.+++........+...+.+|+|++++|
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 479999999887777777888899999999999999988754 36999999988654444445556689999999988
Q ss_pred EEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCC
Q 001321 133 YIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEA 210 (1100)
Q Consensus 133 ~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~ 210 (1100)
+++. .+|.+.||.++...+.+.+ +..+. ..+.+..|+| +|++|+.++ .+|...||++...
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQ----LTSGA------------GNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEe----eccCC------------CCcCCEEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 8765 6888889988876665543 33333 4577889988 687676555 5677888887542
Q ss_pred -EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 211 -QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 211 -~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.......+ .. .+..| +|||++|+.++.++ +.+||+.++
T Consensus 325 ~~~~~~l~~------------------------------~~--~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 325 GGGASLVGG------------------------------RG--YSAQI-SADGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred CCCeEEecC------------------------------CC--CCccC-CCCCCEEEEEcCCC-EEEEECCCC
Confidence 11122222 11 23456 59999998887755 555887543
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=7.4e-11 Score=129.26 Aligned_cols=238 Identities=12% Similarity=0.122 Sum_probs=153.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--eEEEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEEEEc
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--~~~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd~ 105 (1100)
...||.+-|.||+|+.+|.+||+|++|-+|.|||.-.. ...+..+|.+.|-++.|.| +...++++..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 45699999999999999999999999999999998432 3336679999999999998 4578999999999999999
Q ss_pred CCC----------ceeeee-ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001321 106 ESR----------SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1100)
Q Consensus 106 ~s~----------~~l~~~-~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1100)
..- ...... .|...|--++..|++ ..+.++++||+|+-+|+......-.. -..+. ..... .
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~--~~~~~----~l~ny-~ 197 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD--EDCPS----ILVNY-N 197 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc--ccccH----HHHHh-c
Confidence 852 122222 566788899999999 67889999999988887641111000 00000 00000 0
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCC-----CCCccccCCCCCCCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE-----GDSTFLEGISEHQPE 248 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g-----~~~~~g~~~~~~~~~ 248 (1100)
...-..-++..+|+ ...+|++|.++-.+++||.+-... ..... . ....+|+. .-..+++--..+...
T Consensus 198 ~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lk-s~~s~-~-----~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 198 PQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLK-SFRSD-G-----TMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred hhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhcc-CCCCC-c-----cccCCCCcccchhheecCccccCccccc
Confidence 00134577888887 455799999999999999632111 00000 0 00000000 000111110111112
Q ss_pred CCceEE---EEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 249 EKEISA---LCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 249 ~~~V~s---l~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
...+++ +.| +|+|.-|++....-.|.++|+..++
T Consensus 270 ~~~~~~~t~vtf-npNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 270 DRYITCCTYVTF-NPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ccceeeeEEEEE-CCCCcEEEEeeCCeEEEEEeecCCC
Confidence 344444 455 5999988888877789999986654
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=1e-09 Score=115.89 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=92.2
Q ss_pred cccCccccCCCCcEEEEEecCCc-EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEE
Q 001321 484 SPVPITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYI 562 (1100)
Q Consensus 484 ~~~~~~~~s~~~~~l~Tg~~DGt-IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~l 562 (1100)
+.+.+++|+++|.+||||++.|+ |||+.+..+... +.|.-... ...|.+|+|+|++.+|++.+..++|+|
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl--~eFRRG~~-------~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL--YEFRRGTY-------PVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe--eeeeCCce-------eeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 34466789999999999999999 899999888743 33332222 247899999999999999999999999
Q ss_pred EEecCCCCCcceeeeccCC--------------Cceeec-cCCCcceeEEEEeecCc---CeEEEEEcCCCCEEEEEeCC
Q 001321 563 YNLNGSLDAKNFLFVLETK--------------SEVHAL-PEGKISLCRAVFSLVNS---PVRALQFTSSGAKLAVGFEC 624 (1100)
Q Consensus 563 w~l~~~~~~~~~~~~~~~~--------------~~~~~i-~~~~~~~~~~~~~~h~~---~VtsLafSp~g~~LavGs~d 624 (1100)
|+++....+.......... ..+..+ .+... ........+ .+.++.=.+....+-+++.|
T Consensus 245 FKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~---FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~d 321 (391)
T KOG2110|consen 245 FKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRK---FATAKLPESGRKNICSLSSIQKIPRVLVASYD 321 (391)
T ss_pred EEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccc---eeEEEccCCCccceEEeeccCCCCEEEEEEcC
Confidence 9998764322211111000 011111 11111 122222222 34444444577889999999
Q ss_pred ceEEEEecC---CceEE
Q 001321 625 GRVAVLDMN---LLSVL 638 (1100)
Q Consensus 625 G~V~vwD~~---~~~~~ 638 (1100)
|.++.|.+. ++.+.
T Consensus 322 G~~y~y~l~~~~gGec~ 338 (391)
T KOG2110|consen 322 GHLYSYRLPPKEGGECA 338 (391)
T ss_pred CeEEEEEcCCCCCceeE
Confidence 999999764 34554
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.36 E-value=3e-11 Score=127.75 Aligned_cols=210 Identities=13% Similarity=0.147 Sum_probs=151.4
Q ss_pred ccceeeeecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCc--------eEEEeCCCCCCEEEEEEEeC-CCEEEE
Q 001321 24 LNLRIAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQN-QGFLIS 93 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~--------~~~~~~~h~~~V~~l~fs~d-~~~Lls 93 (1100)
++.+.-.-.||.+.|-.++|+|- ...+|+|++|..|.||..+.. -++.+.+|...|-.++|+|- ...|+|
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence 44444556799999999999994 578999999999999987432 25577889999999999994 357899
Q ss_pred EECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001321 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1100)
Q Consensus 94 ~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1100)
++.|++|.+||+.+++.+-++.|+..|.+++|+.++.++++.+.|..|+||+-.. +++... -.+|.=
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~--~~~v~e---~~~heG-------- 216 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR--GTVVSE---GVAHEG-------- 216 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCC--CcEeee---cccccC--------
Confidence 9999999999999999888889999999999999999999999999999998664 555532 233320
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEc---CCEEEEEEccCCE---EEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~---dg~V~lwdl~~~~---~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
.....+.| -.+|..+-+|++ +..+.+||-..-. .......
T Consensus 217 ---~k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt----------------------------- 262 (472)
T KOG0303|consen 217 ---AKPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT----------------------------- 262 (472)
T ss_pred ---CCcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEecc-----------------------------
Confidence 12223334 336764445554 4588899855421 1111110
Q ss_pred CCCceEEEEEecCCCCEEE-EEEcCCcEEEEecCCC
Q 001321 248 EEKEISALCWASSSGSILA-VGYIDGDILLWNTSTT 282 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~-sg~~DG~I~lWd~~~~ 282 (1100)
..+.+.- .| .+|...++ +|-.|+.||.|.+.+.
T Consensus 263 SnGvl~P-Fy-D~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 263 SNGVLLP-FY-DPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCceEEe-ee-cCCCCEEEEEecCCcceEEEEecCC
Confidence 0222222 23 47777654 5667999999998765
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.35 E-value=8e-11 Score=119.92 Aligned_cols=208 Identities=13% Similarity=0.202 Sum_probs=155.9
Q ss_pred eeeecCCCCCeEEEEEcCCC-----CEEEEEECCCeEEEEeCCC--ceEE--------EeCCCCCCEEEEEEEe-CCCEE
Q 001321 28 IAVHYGIPATASILAFDHIQ-----RLLAIATLDGRIKVIGGDG--IEGL--------LISPSQLPYKNLEFLQ-NQGFL 91 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~-----~lLA~gs~dG~I~vw~~~~--~~~~--------~~~~h~~~V~~l~fs~-d~~~L 91 (1100)
....+-|+..++.+-|.|++ .+||+.+ ..+|||.... ..+. ...++.+|+++..|.. +-.++
T Consensus 89 ~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 89 EDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI 166 (364)
T ss_pred ccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCccee
Confidence 33447899999999999998 4777664 6899998853 2221 1345778999999987 55677
Q ss_pred EEEECCCcEEEEEcCCCce----eeeeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001321 92 ISITNDNEIQVWSLESRSL----ACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1100)
Q Consensus 92 ls~s~d~~I~vWd~~s~~~----l~~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~ 166 (1100)
.+.+-|-+..|||++++.. ...+.|...|..++|..++ +.+|+.+.||+||++|+...+...+- |.-|..
T Consensus 167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII--YE~p~~--- 241 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII--YEDPSP--- 241 (364)
T ss_pred EeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE--ecCCCC---
Confidence 7888899999999999732 3444899999999999865 57888899999999998864433331 333321
Q ss_pred cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-CEEEEEEccCCE--EEEEecCCcccccccccCCCCCCCCccccCCC
Q 001321 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-ALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1100)
Q Consensus 167 ~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-g~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~ 243 (1100)
..+...++|++. +.+++++-..| ..|.|-|++-.. +..+.+|
T Consensus 242 ---------~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H------------------------- 286 (364)
T KOG0290|consen 242 ---------STPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNH------------------------- 286 (364)
T ss_pred ---------CCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcC-------------------------
Confidence 267889999886 45556665554 477889987653 3456666
Q ss_pred CCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 244 ~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+.|..++|+.....+|.++++|....+||+...
T Consensus 287 -----~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 287 -----QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred -----cccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 8889999998555679999999999999999754
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.35 E-value=2.4e-10 Score=125.03 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=128.5
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEe
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVI 126 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s 126 (1100)
...+++++.||++.|.+..+.-......|.+.|.+-+|+|||.-|++++.||.|++|.-..--..+..+....|.|++|.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEEC
Confidence 35788999999999998876655667789999999999999999999999999999995443333444777899999999
Q ss_pred cCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEE
Q 001321 127 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 127 ~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwd 206 (1100)
|+..-++... .|.+.|=-+.... + +.+-..|. +-|.++.|+| ..+.+++|++|-..++||
T Consensus 155 p~S~~vl~c~-g~h~~IKpL~~n~-k----~i~WkAHD------------GiiL~~~W~~--~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 155 PNSNSIVFCQ-GGHISIKPLAANS-K----IIRWRAHD------------GLVLSLSWST--QSNIIASGGEDFRFKIWD 214 (737)
T ss_pred CCCCceEEec-CCeEEEeeccccc-c----eeEEeccC------------cEEEEeecCc--cccceeecCCceeEEeec
Confidence 9987544432 3444443333211 1 12234444 8899999988 566799999999999999
Q ss_pred ccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEE
Q 001321 207 VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILL 276 (1100)
Q Consensus 207 l~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~l 276 (1100)
-....+.....| +.+|++++|. |+ ..++.++ -+++++
T Consensus 215 ~~G~~Lf~S~~~------------------------------ey~ITSva~n-pd-~~~~v~S-~nt~R~ 251 (737)
T KOG1524|consen 215 AQGANLFTSAAE------------------------------EYAITSVAFN-PE-KDYLLWS-YNTARF 251 (737)
T ss_pred ccCcccccCChh------------------------------ccceeeeeec-cc-cceeeee-eeeeee
Confidence 876554333222 7889999997 88 4344443 345553
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=1.7e-10 Score=119.20 Aligned_cols=139 Identities=16% Similarity=0.254 Sum_probs=104.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceeeee-ecC
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCL-KWE 117 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~~~-~~~ 117 (1100)
-..|||+|+++|+.+.- ++.|-|....+++-+..--..|..+.|..|.-+++++- .++.|++|++..-+..+.+ ...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 36899999999999865 88888877766543333345689999999988888775 5779999999999888888 455
Q ss_pred CCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 118 SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 118 ~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
..+.+++|+|++++++.-++ +-.|.||.+.+..+.+. +... ..+..++||| +|++.++.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~pK------------~~~kg~~f~~--dg~f~ai~ 151 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHPK------------TNVKGYAFHP--DGQFCAIL 151 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------cccc------------cCceeEEECC--CCceeeee
Confidence 78999999999987665554 77789999987544443 2211 3468889988 78866666
Q ss_pred EcC
Q 001321 197 YEN 199 (1100)
Q Consensus 197 ~~d 199 (1100)
+..
T Consensus 152 sRr 154 (447)
T KOG4497|consen 152 SRR 154 (447)
T ss_pred ecc
Confidence 554
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.8e-10 Score=113.17 Aligned_cols=167 Identities=18% Similarity=0.259 Sum_probs=114.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-----------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGI-----------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-----------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
+|-+-|++|-+++|++|..+|.|-++.+... .++.+..|.+||..++|.. .+|++++ ||.|+=|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 4555689999999999999999999976321 2334467888888888873 3466655 477777776
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
...... .+.=++|.+.. |+.... . ....|.++...
T Consensus 89 ~E~~es--------------------------~~~K~lwe~~~--------P~~~~~------~-----evPeINam~ld 123 (325)
T KOG0649|consen 89 NEEEES--------------------------LATKRLWEVKI--------PMQVDA------V-----EVPEINAMWLD 123 (325)
T ss_pred hhhhhh--------------------------ccchhhhhhcC--------ccccCc------c-----cCCccceeEec
Confidence 432110 11123444331 122211 0 11458888888
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
|. .+. ++.+..|+.+.-||+++|++.. +.|| ...|.+++--+.++ .
T Consensus 124 P~-enS-i~~AgGD~~~y~~dlE~G~i~r~~rGH------------------------------tDYvH~vv~R~~~~-q 170 (325)
T KOG0649|consen 124 PS-ENS-ILFAGGDGVIYQVDLEDGRIQREYRGH------------------------------TDYVHSVVGRNANG-Q 170 (325)
T ss_pred cC-CCc-EEEecCCeEEEEEEecCCEEEEEEcCC------------------------------cceeeeeeecccCc-c
Confidence 86 444 7777799999999999999865 6677 66777777433444 5
Q ss_pred EEEEEcCCcEEEEecCCCCC
Q 001321 265 LAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~ 284 (1100)
|++|++||++|+||..+++.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred eeecCCCccEEEEeccccce
Confidence 99999999999999998853
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=8.8e-12 Score=133.75 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=115.5
Q ss_pred ccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecC
Q 001321 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 488 ~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~ 567 (1100)
++++..++..++||+.||++|||+...-... .....|...|.+|+|+|||..||+-+.| ..+||+..+
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhh-----------hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 4589999999999999999999997654422 2355788999999999999999999999 899999987
Q ss_pred CC-------CC-----cceeeeccCCCceeecc---C-CCccee-------------EEEEeecCcCeEEEEEcCCCCEE
Q 001321 568 SL-------DA-----KNFLFVLETKSEVHALP---E-GKISLC-------------RAVFSLVNSPVRALQFTSSGAKL 618 (1100)
Q Consensus 568 ~~-------~~-----~~~~~~~~~~~~~~~i~---~-~~~~~~-------------~~~~~~h~~~VtsLafSp~g~~L 618 (1100)
.. .+ ..|.|..++.++...+- . +.+... ......-...|++++.|++|+++
T Consensus 217 g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 217 GAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred CchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 71 11 12344433322311111 0 111111 11111124579999999999999
Q ss_pred EEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccC
Q 001321 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNT 662 (1100)
Q Consensus 619 avGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~ 662 (1100)
|+|+.||.|.|++...-+.++... ..|...|+.|+|++....
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCc
Confidence 999999999999999888774332 359999999999965544
No 204
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.3e-10 Score=121.22 Aligned_cols=289 Identities=16% Similarity=0.181 Sum_probs=179.6
Q ss_pred cEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee--CCCeEEEEecCceEEEEEecCCCCCcc
Q 001321 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF--INSSLAVGNEFGLVYIYNLNGSLDAKN 573 (1100)
Q Consensus 496 ~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp--d~~~Lasg~~dG~V~lw~l~~~~~~~~ 573 (1100)
..++++..+|+||+||..++... ...++|...+..+.|.. ....+.+++.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l-----------~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL-----------EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh-----------heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--
Confidence 57899999999999999886644 34678888888999987 4557889999999999999886321
Q ss_pred eeeeccCCCceeeccCCCcceeEEEEeecC-cCeEEEEEcCCCCEEEEEeC----CceEEEEecCCceEEEEeecCCCCC
Q 001321 574 FLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQFTSSGAKLAVGFE----CGRVAVLDMNLLSVLFFTDDISGSS 648 (1100)
Q Consensus 574 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~-~~VtsLafSp~g~~LavGs~----dG~V~vwD~~~~~~~~~~~~~~~~~ 648 (1100)
.+..+..++ .+-.+++..-.++.+|.|++ +-.|.+||++..+... ......|.
T Consensus 108 ---------------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~ 165 (376)
T KOG1188|consen 108 ---------------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHN 165 (376)
T ss_pred ---------------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhcc
Confidence 234445555 56678888777888999874 6789999999876631 11223599
Q ss_pred CCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEecccC
Q 001321 649 SPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVC 728 (1100)
Q Consensus 649 ~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~ 728 (1100)
..|++|.|.+.. ..+|++|+-||-|.+||....+ ... +| ++++
T Consensus 166 DDVT~lrFHP~~---------------------pnlLlSGSvDGLvnlfD~~~d~---------EeD--aL-~~vi---- 208 (376)
T KOG1188|consen 166 DDVTQLRFHPSD---------------------PNLLLSGSVDGLVNLFDTKKDN---------EED--AL-LHVI---- 208 (376)
T ss_pred CcceeEEecCCC---------------------CCeEEeecccceEEeeecCCCc---------chh--hH-HHhh----
Confidence 999999998433 2579999999999999933210 000 00 0000
Q ss_pred CCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecCeeEEEecccceeecccc--
Q 001321 729 GFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSVRLYSRKSVIQKVKHK-- 806 (1100)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~~vrl~sl~~~~~~~~~~-- 806 (1100)
+... .| ... .-++++. .....+..-....+|++..-.++..+.
T Consensus 209 -----------------N~~s-SI----~~i-----------gw~~~~y--krI~clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 209 -----------------NHGS-SI----HLI-----------GWLSKKY--KRIMCLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred -----------------cccc-ee----eee-----------eeecCCc--ceEEEEEccCceeEEEccCCChhhcccCc
Confidence 0000 00 000 1111211 223333344467777777664411110
Q ss_pred --------c--ccce-eeeeecCCceEEEEEEEecCcEEEeecCC---hhhhhhccccceeeeeecccc---ccceeec-
Q 001321 807 --------N--RCCW-ASTIEKDEKVCGLLLLFQTGAVQIRSLPD---LELVMESSLMSILRWNFKANM---DKTISAD- 868 (1100)
Q Consensus 807 --------~--~c~~-~~~~~~~~~~~~l~~~~~~G~i~i~slp~---l~~~~~~~~~~~l~~~~~~~~---~~~~~~s- 868 (1100)
+ -|.+ +-..+....+.+++.+--.|+.+||-+-+ ++++.++ -++++++ +|+|+|-
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~-------a~l~g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP-------AILQGGHEEIVRDILFDV 326 (376)
T ss_pred cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcc-------ccccCCcHHHHHHHhhhc
Confidence 0 2211 11011133455666665589999986553 6655554 3345555 6888888
Q ss_pred CCcEEEEcc-eeEEEEEe--ecCCCcccccCCC
Q 001321 869 NGQITLANG-SEVAFVNL--LAGENEFSILESS 898 (1100)
Q Consensus 869 ~gq~~l~~g-~e~~~~s~--~~~~~~~~~~~~~ 898 (1100)
-+.+++++| ++++.+.- -+.|..|..-|+|
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~~da~e~~~s~~esl 359 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKVEDATEINFSWTESL 359 (376)
T ss_pred ccceeeccCCCceEEEEecCCcccccccccccc
Confidence 888999999 77666532 3456666665544
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.1e-10 Score=137.20 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=137.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEE--EEcC
Q 001321 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQV--WSLE 106 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~v--Wd~~ 106 (1100)
++...+...+|+|+++.||..+.+ ..|++|+....+........+....++|+|||.+|+.+. .++.+.| ||+.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~ 280 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN 280 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC
Confidence 456678999999999999998754 479999997654433333333455789999999888765 5776554 5777
Q ss_pred CCceeeeeecCCCeEEEEEecCCCEEEEE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 107 SRSLACCLKWESNITAFSVISGSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 107 s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G-~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
++.......+...+++.+|+|++++++.. +.+|...||.++...+.... + .+. . .+..|+
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----l-~~~------------~--~~~~~S 341 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----V-GGR------------G--YSAQIS 341 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----e-cCC------------C--CCccCC
Confidence 77765555666778999999999987755 46788999999875543321 2 111 2 346787
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
| +|+.++.++.++. .+||+.++........ ....+..|. |||++|
T Consensus 342 p--DG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~-------------------------------~~~~~~~~s-PdG~~i 386 (429)
T PRK01742 342 A--DGKTLVMINGDNV-VKQDLTSGSTEVLSST-------------------------------FLDESPSIS-PNGIMI 386 (429)
T ss_pred C--CCCEEEEEcCCCE-EEEECCCCCeEEecCC-------------------------------CCCCCceEC-CCCCEE
Confidence 7 7887888777765 5699988865543211 011245674 999999
Q ss_pred EEEEcCCcEEEEecC
Q 001321 266 AVGYIDGDILLWNTS 280 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~ 280 (1100)
+.++.+|...+|.+.
T Consensus 387 ~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 387 IYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999888763
No 206
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=1e-06 Score=111.18 Aligned_cols=474 Identities=15% Similarity=0.146 Sum_probs=259.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCC----eEEEEeCC--C-ceEEEeC------CCCCCEEEEEEEeCCCEEEEEECCCcEE
Q 001321 35 PATASILAFDHIQRLLAIATLDG----RIKVIGGD--G-IEGLLIS------PSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG----~I~vw~~~--~-~~~~~~~------~h~~~V~~l~fs~d~~~Lls~s~d~~I~ 101 (1100)
...+...+|++....+.++.... .|.+.... . .+.+... .....|..+.|.++...|+.+..+|.|.
T Consensus 21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~ 100 (928)
T PF04762_consen 21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDII 100 (928)
T ss_pred ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEE
Confidence 34677788888776554444332 34444332 1 1222222 2346899999999999999999999999
Q ss_pred EE----EcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee-----------cee-------
Q 001321 102 VW----SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL-----------PYN------- 159 (1100)
Q Consensus 102 vW----d~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~-----------~~~------- 159 (1100)
+. |..+...-..-..+..|.|++|+||...+++.+.+|+|.+..-+-+ .+... +..
T Consensus 101 ~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd--~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 101 LVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD--PISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce--EEEEeecCccccCCCceeeeccCccc
Confidence 99 6666655444467788999999999999999999998876643221 01000 000
Q ss_pred --eccccccccc-------CCC------CCCCCCeEEEEeccCCCCCEEEEEEc---C---CEEEEEEccCCEEEEEecC
Q 001321 160 --ISADALSEKA-------GFP------LLSHQPVVGVLPHPNSSGNRVLIAYE---N---ALVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 160 --i~~~~~~~~~-------~~~------~~~~~~V~sv~f~P~~~g~~ll~~~~---d---g~V~lwdl~~~~~~~~~~~ 218 (1100)
+.|.. .|.. ..| ...+..-..|+| +.||.++++.+- . ..++||+-+ |.+......
T Consensus 179 TQF~Gs~-gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~ 254 (928)
T PF04762_consen 179 TQFHGSA-GKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP 254 (928)
T ss_pred CccCcch-hhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc
Confidence 11100 0110 000 002345678999 779999888875 2 478899866 443322110
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc---CCcEEEEecCCCCCCCCcccCCCCc
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI---DGDILLWNTSTTASTKGQQTGSRNN 295 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~---DG~I~lWd~~~~~~~~~~~~~~~~~ 295 (1100)
. .+--.+++|- |.|++|++... .-.|.||.-+...
T Consensus 255 ----------------v-------------~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr------------ 292 (928)
T PF04762_consen 255 ----------------V-------------DGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR------------ 292 (928)
T ss_pred ----------------C-------------CCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE------------
Confidence 0 3334568996 99999998865 3568888654321
Q ss_pred ceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEE
Q 001321 296 VVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMI 375 (1100)
Q Consensus 296 ~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~ 375 (1100)
...+.+........+..+.|++.. .+|+..-.+ .+.+|...+ ...|....+.++....+..+.
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds--------~iLAv~~~~--------~vqLWt~~N-YHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDS--------EILAVWLED--------RVQLWTRSN-YHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCC--------CEEEEEecC--------CceEEEeeC-CEEEEEEEEEccCCCCCCceE
Confidence 111111112233456777777633 344443322 244554432 233333345555555555577
Q ss_pred EccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhH
Q 001321 376 LLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGL 455 (1100)
Q Consensus 376 ~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~ 455 (1100)
+.|. +|..+.+++.+|++..++-. |........+ | .+.. . ...+......
T Consensus 356 Wdpe-------~p~~L~v~t~~g~~~~~~~~------~~v~~s~~~~----~-----~D~g---~-vaVIDG~~ll---- 405 (928)
T PF04762_consen 356 WDPE-------KPLRLHVLTSNGQYEIYDFA------WDVSRSPGSS----P-----NDNG---T-VAVIDGNKLL---- 405 (928)
T ss_pred ECCC-------CCCEEEEEecCCcEEEEEEE------EEEEecCCCC----c-----cCce---E-EEEEeCCeEE----
Confidence 7777 56778888887887765511 1100000000 0 0000 0 0000000000
Q ss_pred hHHHhhccccCCCcccCcccccccC---CcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEE--eeeccceee-
Q 001321 456 SEIATFTKLHSSHTQAGHIKWPLSG---GVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI--CALDAEVQG- 529 (1100)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~pl~G---G~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~--~~l~~~~~~- 529 (1100)
-.++...+...|+.. ..+..+..++++++...+++-..||+|.+|.......... ..+......
T Consensus 406 ----------lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (928)
T PF04762_consen 406 ----------LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLD 475 (928)
T ss_pred ----------EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccc
Confidence 000101111111111 1223445567888888899999999999998554332100 000000000
Q ss_pred ----eeecCCCCCeeEEEEeeCCCeEEEEecC---ceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeec
Q 001321 530 ----IEVAGSRAPVSTLSFCFINSSLAVGNEF---GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV 602 (1100)
Q Consensus 530 ----~~l~~h~~~Vt~lafspd~~~Lasg~~d---G~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h 602 (1100)
.........+..++|..++..++....+ ..+.++++...... .........
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------~~~~~~~~~ 533 (928)
T PF04762_consen 476 SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENS----------------------ASVESSTEV 533 (928)
T ss_pred cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCc----------------------eeEEEEecc
Confidence 0011223568899999988877776664 67777777443211 122333445
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 603 NSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 603 ~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
.+.+..+...++...+++-..+|.|..++..+.
T Consensus 534 ~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 534 DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred CceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 667777777777655777788998886666544
No 207
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.7e-07 Score=111.67 Aligned_cols=192 Identities=15% Similarity=0.118 Sum_probs=151.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCC-----EEEEEEEeCCCEEEEEECCCcEEEEEcC-CCceeeee
Q 001321 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-----YKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL 114 (1100)
Q Consensus 41 la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~-----V~~l~fs~d~~~Lls~s~d~~I~vWd~~-s~~~l~~~ 114 (1100)
..+.-....+|+++.++.+-+|+.....++....+... ..-+.++++.-++++++.-+.|.+|+.. ........
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 45556678899999999999999998888887777653 3334456777789999999999999986 33445567
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|++.|.++.++-++.++++.++|.++|+|.++..+ .. +-..-+|. ..|+.+.|+|. +++
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~--~~--~~~~fgHs------------aRvw~~~~~~n----~i~ 232 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE--VL--GCTGFGHS------------ARVWACCFLPN----RII 232 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeeccccc--cc--Cccccccc------------ceeEEEEeccc----eeE
Confidence 999999999999999999999999999999998622 11 11122333 88999999874 699
Q ss_pred EEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcE
Q 001321 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I 274 (1100)
+++.|.+.++|+.....+..+.+|. .+.|..+... ++...++|++.||.+
T Consensus 233 t~gedctcrvW~~~~~~l~~y~~h~-----------------------------g~~iw~~~~~-~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGTQLEVYDEHS-----------------------------GKGIWKIAVP-IGVIIKVTGGNDSTL 282 (967)
T ss_pred EeccceEEEEEecccceehhhhhhh-----------------------------hcceeEEEEc-CCceEEEeeccCcch
Confidence 9999999999988776665555551 4556676643 777889999999999
Q ss_pred EEEecCCC
Q 001321 275 LLWNTSTT 282 (1100)
Q Consensus 275 ~lWd~~~~ 282 (1100)
++|+....
T Consensus 283 k~~~l~~r 290 (967)
T KOG0974|consen 283 KLWDLNGR 290 (967)
T ss_pred hhhhhhcc
Confidence 99998754
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.28 E-value=2.3e-09 Score=109.45 Aligned_cols=167 Identities=11% Similarity=0.159 Sum_probs=112.6
Q ss_pred CCCCCEEEEEEEe--CCC-EEEEEEC----CCcEEEEE--cCCCceeee--eecCCCeEEEEEecCCC-----EEEEEeC
Q 001321 74 PSQLPYKNLEFLQ--NQG-FLISITN----DNEIQVWS--LESRSLACC--LKWESNITAFSVISGSH-----FMYIGDE 137 (1100)
Q Consensus 74 ~h~~~V~~l~fs~--d~~-~Lls~s~----d~~I~vWd--~~s~~~l~~--~~~~~~Vt~~~~s~~~~-----~l~~G~~ 137 (1100)
...-++-++.|+. +.+ +|+.++- .|.|.|.. -.+++.+.. +.|+.+++.+.|.|+.. +||+.
T Consensus 42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-- 119 (364)
T KOG0290|consen 42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-- 119 (364)
T ss_pred cCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--
Confidence 3344566777762 333 4555542 45666654 456666544 47889999999999873 44443
Q ss_pred CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE----E
Q 001321 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI----I 213 (1100)
Q Consensus 138 dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~----~ 213 (1100)
+..+|+|.+..++.++... ..+..+. . .....++++.-|+-. +.+++.+++-|-+..|||++++.. .
T Consensus 120 ~D~LRlWri~~ee~~~~~~-~~L~~~k---n----s~~~aPlTSFDWne~-dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 120 SDFLRLWRIGDEESRVELQ-SVLNNNK---N----SEFCAPLTSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cCeEEEEeccCcCCceehh-hhhccCc---c----cccCCcccccccccC-CcceeEeecccCeEEEEEEeeccccceee
Confidence 3457999998765555421 1122211 1 112378999999765 566788899999999999998722 2
Q ss_pred EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC-CEEEEEEcCCcEEEEecCCC
Q 001321 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg-~~l~sg~~DG~I~lWd~~~~ 282 (1100)
++..| +++|..++|. ..+ ..+++++.||++|++|+...
T Consensus 191 QLIAH------------------------------DKEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 191 QLIAH------------------------------DKEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred EEEec------------------------------CcceeEEEec-cCccceEEEecCCCcEEEEEeccc
Confidence 34445 9999999987 443 67899999999999998643
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=1e-08 Score=106.48 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=83.2
Q ss_pred ccccCCCCcEEEEEecCCc-EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEec
Q 001321 488 ITKCHSVDRVYLAGYHDGS-VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1100)
Q Consensus 488 ~~~~s~~~~~l~Tg~~DGt-IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~ 566 (1100)
|++...+|.++||++..|| |||||..++.+. +.+. -....+.|.+|+|||++.+||++++-|+|+||.+.
T Consensus 186 cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l--~E~R-------RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 186 CVALNLQGTLVATASTKGTLIRIFDTEDGTLL--QELR-------RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred EEEEcCCccEEEEeccCcEEEEEEEcCCCcEe--eeee-------cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 3344456779999999999 899999999865 1111 11234689999999999999999999999999998
Q ss_pred CCCCCcceeeeccCCCcee-eccC-CCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEE
Q 001321 567 GSLDAKNFLFVLETKSEVH-ALPE-GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAV 629 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~v 629 (1100)
......... ....... .++. -..-.-+..++...++..-++|-.+.+.++.-+.||+.+=
T Consensus 257 ~~~~~~~~~---SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k 318 (346)
T KOG2111|consen 257 DTENTEDES---SSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYK 318 (346)
T ss_pred cCCCCcccc---ccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence 754221100 0000000 1111 1111234556667778888888777555555556676543
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=1e-09 Score=131.11 Aligned_cols=207 Identities=17% Similarity=0.216 Sum_probs=141.6
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCceE--------EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEE
Q 001321 32 YGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEG--------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~~~--------~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~v 102 (1100)
|-|...+..+|.++.. .++++|+.||.|+||+....+. ........++..+.+++++..++.++.||.|++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 5667777788887665 9999999999999999844322 233346778999999999999999999999999
Q ss_pred EEcCCC---ceeeee------ecCCCeE-EEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 103 WSLESR---SLACCL------KWESNIT-AFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 103 Wd~~s~---~~l~~~------~~~~~Vt-~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
.++.-. +..... ...+.+. +-++... ...++.+...+.|..||......- +++...
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~-----w~lk~~------- 1192 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA-----WRLKNQ------- 1192 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----HhhhcC-------
Confidence 998762 222111 2223333 3334332 236778888888888987642211 222211
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
.+.+.|++++..| .+..+++|.+.|.+.+||++=+..+....|.. ..
T Consensus 1193 ---~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~----------------------------~~ 1239 (1431)
T KOG1240|consen 1193 ---LRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA----------------------------RA 1239 (1431)
T ss_pred ---ccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcc----------------------------cC
Confidence 1238899999988 57789999999999999999887776655410 22
Q ss_pred ceE--EEEEecCCCCEEEEEE--cCCcEEEEecCCCC
Q 001321 251 EIS--ALCWASSSGSILAVGY--IDGDILLWNTSTTA 283 (1100)
Q Consensus 251 ~V~--sl~w~spdg~~l~sg~--~DG~I~lWd~~~~~ 283 (1100)
.+. ++|...|.....++++ ..+.|.+|++.+|.
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 333 3443434345555554 47889999999884
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.26 E-value=4.7e-10 Score=123.22 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=73.8
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
+|++|+++||+-++||.+||+|+.+.++. -..+.--+...|++|||||+++++|++|..|.||.+...
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-----------g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er- 364 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELL-----------GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER- 364 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHH-----------HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-
Confidence 78999999999999999999999887754 112233367999999999999999999999999999886
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEc
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT 612 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafS 612 (1100)
+.+..-++|++.|+.++|.
T Consensus 365 ------------------------RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 ------------------------RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred ------------------------eEEEeccccccceeeEeec
Confidence 2455567899999999998
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=1.6e-10 Score=126.93 Aligned_cols=142 Identities=11% Similarity=0.130 Sum_probs=103.9
Q ss_pred CCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC
Q 001321 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 616 (1100)
Q Consensus 537 ~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~ 616 (1100)
++|...+|+|||++||+.++||.+|||++.... ++..+...-+...+++|||||+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-------------------------Llg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-------------------------LLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHH-------------------------HHHHHHhhccceEEEEEcCCcc
Confidence 478899999999999999999999999998751 2333455667889999999999
Q ss_pred EEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccc----------------cCCCCCCCCCCC---
Q 001321 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSL----------------AKNPNHSEREVP--- 677 (1100)
Q Consensus 617 ~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~----------------~~~~~~~~~~~~--- 677 (1100)
+|++|++|-.|.||.+...+++...+ +|.++|..|+|.+|-...-. .+.+.....-+.
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGq---GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~ 422 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQ---GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGC 422 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEecc---ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCC
Confidence 99999999999999999999993333 59999999999955332110 000000000000
Q ss_pred -------CCCCceEEEEEecceeEEEEeCCCCcccc
Q 001321 678 -------VNPAEEVIIVLFKDAKISIVGGSSENMIS 706 (1100)
Q Consensus 678 -------~~~~~~lL~~gt~dg~v~v~d~~~g~~l~ 706 (1100)
.+-....+-+.+-|-.+++||.....+..
T Consensus 423 ~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 423 PLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccccccceEEEeecccccceEEEEecchhhccc
Confidence 11235677788999999999965544433
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.9e-09 Score=111.88 Aligned_cols=166 Identities=19% Similarity=0.257 Sum_probs=117.2
Q ss_pred CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC--CCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCee
Q 001321 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 77 ~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~--~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
..+..++|++.-..++++..|..|+++|-.+ +..+.+.+. ..|+|++|-|-+ .-+++|+..| |.||..+..- .+
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl-n~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL-NA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc-cc
Confidence 3578899999777788899999999999877 444444333 679999999975 5899999999 7899877411 11
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE-EcCCEEEEEEccCCEEEEEecCCcccccccccCCCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~-~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (1100)
.. .+....-....-+..+.+.+|++++|++ +|+.++++ +.+..|.|||.+++..+.+.-.
T Consensus 176 ~r---~~~~~s~~~~qvl~~pgh~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-------------- 236 (445)
T KOG2139|consen 176 NR---NIRMMSTHHLQVLQDPGHNPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLIPK-------------- 236 (445)
T ss_pred cc---ccccccccchhheeCCCCceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccccc--------------
Confidence 00 0000000001111123347899999977 68877765 4567999999999876544311
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
..+.++-+-|. |||++++++.-|+..++|+..
T Consensus 237 ---------------glgg~slLkwS-Pdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 237 ---------------GLGGFSLLKWS-PDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred ---------------CCCceeeEEEc-CCCCEEEEecccceeeeehhc
Confidence 05668888995 999999999999999999753
No 214
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=6e-10 Score=110.83 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=121.3
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
+++|.+++++.|..+|+|-|..+..-.-.. ..-+.+..-+...+|.++|..|+|. ..+|.+|+. |.|+=|.|+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~s-a~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGS-AEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccc-cCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 688999999999999999999876322110 1111111113347899999999998 557777765 999999998752
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCC
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSS 649 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~ 649 (1100)
....+ ++ +..... +..+-...--.|.++-..|..+-+..+..|+.++-||++++++. ..+.||++
T Consensus 93 es~~~-------K~---lwe~~~--P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~---r~~rGHtD 157 (325)
T KOG0649|consen 93 ESLAT-------KR---LWEVKI--PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ---REYRGHTD 157 (325)
T ss_pred hhccc-------hh---hhhhcC--ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE---EEEcCCcc
Confidence 11000 00 000000 01110112335889999988777777779999999999999987 55668999
Q ss_pred CeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccc
Q 001321 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMI 705 (1100)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l 705 (1100)
+|.++.-..... .+++|++||++++||..|++-.
T Consensus 158 YvH~vv~R~~~~----------------------qilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 158 YVHSVVGRNANG----------------------QILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred eeeeeeecccCc----------------------ceeecCCCccEEEEecccccee
Confidence 999998753333 3999999999999998887754
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.21 E-value=1.2e-09 Score=113.15 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=102.8
Q ss_pred EEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeecee
Q 001321 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYN 159 (1100)
Q Consensus 81 ~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~ 159 (1100)
..+|||+|+++++++.- .+.|-|..+-+++..+.--.+|.-+.|..+..+++++. .++.|.+|++...+-. -+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~-----ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY-----CK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE-----EE
Confidence 56899999999999854 89999999988877775566788889999988877665 5789999998742211 12
Q ss_pred ecccccccccCCCCCCCCCeEEEEeccCCCCCEE-EEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCcc
Q 001321 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV-LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l-l~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
|.... .++.++.|+| +|.++ .+..-+-.|.+|++.+.+.....-.
T Consensus 87 Ideg~------------agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~~p-------------------- 132 (447)
T KOG4497|consen 87 IDEGQ------------AGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLPHP-------------------- 132 (447)
T ss_pred eccCC------------CcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEeccc--------------------
Confidence 43322 7899999999 67444 4555677889999998876543211
Q ss_pred ccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC
Q 001321 239 LEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D 271 (1100)
...+...+|+ |||++.+.....
T Consensus 133 ----------K~~~kg~~f~-~dg~f~ai~sRr 154 (447)
T KOG4497|consen 133 ----------KTNVKGYAFH-PDGQFCAILSRR 154 (447)
T ss_pred ----------ccCceeEEEC-CCCceeeeeecc
Confidence 4456778876 999988776653
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.8e-09 Score=119.51 Aligned_cols=282 Identities=14% Similarity=0.191 Sum_probs=184.4
Q ss_pred eeeeecCCCCCeEEEEEcCCCCE-EEEEECCCeEEEEeCCCceEEEeCCCCC-CEEEEEEEeCCCEEEEEECCCcEEEEE
Q 001321 27 RIAVHYGIPATASILAFDHIQRL-LAIATLDGRIKVIGGDGIEGLLISPSQL-PYKNLEFLQNQGFLISITNDNEIQVWS 104 (1100)
Q Consensus 27 ~~~~~~G~~~~v~~la~sp~~~l-LA~gs~dG~I~vw~~~~~~~~~~~~h~~-~V~~l~fs~d~~~Lls~s~d~~I~vWd 104 (1100)
.+...+++|..-+.+..+|||++ ||+|+..-.|++||+.+..+.+...-.+ .|...-.+.|-..++-...|.+|.+-.
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 35667899999999999999996 6899999999999999998888776655 455555555656667677788877755
Q ss_pred cCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 105 ~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
-........ -+..-..|+++.-..-|+++.....| +.++.++|++.. ||.+.. +.+.+|..
T Consensus 123 k~G~hy~~R--IP~~GRDm~y~~~scDly~~gsg~ev--YRlNLEqGrfL~-P~~~~~--------------~~lN~v~i 183 (703)
T KOG2321|consen 123 KYGRHYRTR--IPKFGRDMKYHKPSCDLYLVGSGSEV--YRLNLEQGRFLN-PFETDS--------------GELNVVSI 183 (703)
T ss_pred hcCeeeeee--cCcCCccccccCCCccEEEeecCcce--EEEEcccccccc-cccccc--------------ccceeeee
Confidence 333322222 22222345555444445555555544 677777788876 355442 67888888
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
+| ...+|++|..+|.|-.||-.....+........ + ...++. .....|+++.|. .+|-+
T Consensus 184 n~--~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-----v----~s~pg~---------~~~~svTal~F~-d~gL~ 242 (703)
T KOG2321|consen 184 NE--EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-----V----NSHPGG---------DAAPSVTALKFR-DDGLH 242 (703)
T ss_pred cC--ccceEEecccCceEEEecchhhhhheeeecccc-----c----CCCccc---------cccCcceEEEec-CCcee
Confidence 77 455688999999999999988754433322000 0 001111 115679999975 77999
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEE
Q 001321 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~lt 344 (1100)
+++|..+|.+.+||+.+.. |.. ........||..++|.-. .++..+++....
T Consensus 243 ~aVGts~G~v~iyDLRa~~-----------pl~---~kdh~~e~pi~~l~~~~~------~~q~~v~S~Dk~-------- 294 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASK-----------PLL---VKDHGYELPIKKLDWQDT------DQQNKVVSMDKR-------- 294 (703)
T ss_pred EEeeccCCcEEEEEcccCC-----------cee---ecccCCccceeeeccccc------CCCceEEecchH--------
Confidence 9999999999999998652 221 122334567788877541 223344444333
Q ss_pred EEEcCCccccccceeeeeeeecCCCcceeEEEccCCC
Q 001321 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1100)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~ 381 (1100)
++.+|....-..+ ..+.....+.|+|+.|++.
T Consensus 295 ~~kiWd~~~Gk~~-----asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 295 ILKIWDECTGKPM-----ASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred HhhhcccccCCce-----eeccccCCcCceeeecCCc
Confidence 6788866533322 5566677899999999853
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=2.5e-09 Score=113.08 Aligned_cols=193 Identities=14% Similarity=0.197 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCEEEEEECC--CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 38 ASILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~d--G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
|.-+-|+ ..+||..+.+ ..+++.+......+....-..+|-+|.+..+. |+.+=.+. |.|+|+.+-++++++.
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~R--LvV~Lee~-IyIydI~~MklLhTI~ 123 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKR--LVVCLEES-IYIYDIKDMKLLHTIE 123 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccce--EEEEEccc-EEEEecccceeehhhh
Confidence 4445665 5678877766 35899999888777777777789999988763 55555444 9999999999998882
Q ss_pred ----cCCCeEEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 116 ----WESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 116 ----~~~~Vt~~~~s~~~~~l~~G~--~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.+..+.+++++..+.+++.=+ ..|.|.||+....+.. -.|..|. +++.+++|+| +
T Consensus 124 t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v-----~~I~aH~------------~~lAalafs~--~ 184 (391)
T KOG2110|consen 124 TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV-----NTINAHK------------GPLAALAFSP--D 184 (391)
T ss_pred ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee-----eEEEecC------------CceeEEEECC--C
Confidence 234588888888888888644 4799999997742211 3477777 9999999988 8
Q ss_pred CCEEEEEEcCCE-EEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 190 GNRVLIAYENAL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 190 g~~ll~~~~dg~-V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
|++|+++++.|+ ||||.+.+|+.+..|.. -.. .-.|.+++|. |++.+|.+.
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRR-------G~~--------------------~~~IySL~Fs-~ds~~L~~s 236 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRR-------GTY--------------------PVSIYSLSFS-PDSQFLAAS 236 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeC-------Cce--------------------eeEEEEEEEC-CCCCeEEEe
Confidence 999999999994 68999999976654422 111 5678999985 999999999
Q ss_pred EcCCcEEEEecCCC
Q 001321 269 YIDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1100)
+..++|.++.++..
T Consensus 237 S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 237 SNTETVHIFKLEKV 250 (391)
T ss_pred cCCCeEEEEEeccc
Confidence 99999999998754
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.2e-09 Score=125.98 Aligned_cols=197 Identities=14% Similarity=0.054 Sum_probs=139.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC---CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE-CCC--cEEEEEcCC
Q 001321 34 IPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDN--EIQVWSLES 107 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~---dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~--~I~vWd~~s 107 (1100)
.+..+...+|||||+.||..+. +..|++|+..+.+...+....+.+..++|+|||.+|+... .++ .|.+||+.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3557889999999999997653 3579999997766555444555567789999999888663 344 599999999
Q ss_pred CceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 108 RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
++..........+....|+|++++++..+. +|...||.++...+...+ +.... ..+....|+|
T Consensus 277 g~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----lt~~~------------~~~~~~~~Sp 340 (429)
T PRK03629 277 GQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----ITWEG------------SQNQDADVSS 340 (429)
T ss_pred CCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----eecCC------------CCccCEEECC
Confidence 887666656667889999999998866654 567788888876655443 22111 3345678877
Q ss_pred CCCCCEEEEEEcC---CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC
Q 001321 187 NSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1100)
Q Consensus 187 ~~~g~~ll~~~~d---g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~ 263 (1100)
+|++++....+ ..|.+||+.++....+... ....+..|. |||+
T Consensus 341 --DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-------------------------------~~~~~p~~S-pDG~ 386 (429)
T PRK03629 341 --DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-------------------------------FLDETPSIA-PNGT 386 (429)
T ss_pred --CCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-------------------------------CCCCCceEC-CCCC
Confidence 78877766544 3578899988865543211 111235675 9999
Q ss_pred EEEEEEcCCc---EEEEecC
Q 001321 264 ILAVGYIDGD---ILLWNTS 280 (1100)
Q Consensus 264 ~l~sg~~DG~---I~lWd~~ 280 (1100)
+|+.++.++. |.+|++.
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEEEEEcCCCceEEEEEECC
Confidence 9999988875 6667764
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.20 E-value=5e-08 Score=111.19 Aligned_cols=193 Identities=16% Similarity=0.222 Sum_probs=121.4
Q ss_pred CCEEEEEE-CCCeEEEEeCCCceEEEeCCCCCCE-EEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEE
Q 001321 47 QRLLAIAT-LDGRIKVIGGDGIEGLLISPSQLPY-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFS 124 (1100)
Q Consensus 47 ~~lLA~gs-~dG~I~vw~~~~~~~~~~~~h~~~V-~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~ 124 (1100)
++++++.. .+|.|.|.|....+++...+....+ ..+.|+|||+++..++.|+.|.++|+.+++++...........++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 34555544 5799999999888877665544444 457899999999999999999999999999999998888899999
Q ss_pred EecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CCEE
Q 001321 125 VISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALV 202 (1100)
Q Consensus 125 ~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V 202 (1100)
++++++++++++ ..+.|.|+|.. +.++.+ .++....... .....+.+|..+| ....++..-. .+.|
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~--tle~v~---~I~~~~~~~~-----~~~~Rv~aIv~s~--~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAE--TLEPVK---TIPTGGMPVD-----GPESRVAAIVASP--GRPEFVVNLKDTGEI 152 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETT--T--EEE---EEE--EE-TT-----TS---EEEEEE-S--SSSEEEEEETTTTEE
T ss_pred EcCCCCEEEEEecCCCceeEeccc--ccccee---eccccccccc-----ccCCCceeEEecC--CCCEEEEEEccCCeE
Confidence 999999999887 57888776644 344442 2443221000 0125677887766 3443555544 4666
Q ss_pred EEEEccCCEEE--EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE-EcCCcEEEEec
Q 001321 203 ILWDVSEAQII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNT 279 (1100)
Q Consensus 203 ~lwdl~~~~~~--~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg-~~DG~I~lWd~ 279 (1100)
.+-|....+.. ..... ........|. |++++++++ ..++.|.++|.
T Consensus 153 ~vVdy~d~~~~~~~~i~~------------------------------g~~~~D~~~d-pdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKV------------------------------GRFPHDGGFD-PDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEETTTSSCEEEEEEE--------------------------------TTEEEEEE--TTSSEEEEEEGGGTEEEEEET
T ss_pred EEEEeccccccceeeecc------------------------------cccccccccC-cccceeeecccccceeEEEee
Confidence 66666554221 12111 3344556775 999987664 56778999997
Q ss_pred CCC
Q 001321 280 STT 282 (1100)
Q Consensus 280 ~~~ 282 (1100)
.++
T Consensus 202 ~~~ 204 (369)
T PF02239_consen 202 KTG 204 (369)
T ss_dssp TTT
T ss_pred ccc
Confidence 654
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=3.7e-10 Score=122.82 Aligned_cols=219 Identities=16% Similarity=0.128 Sum_probs=149.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce--EEEeCCCCCCEEEEEEEeC--CCEEEEEECCCcEEEEEcCC
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~--~~~~~~h~~~V~~l~fs~d--~~~Lls~s~d~~I~vWd~~s 107 (1100)
-+|++.|..+.|...|.+|++|+.|-.|.+||-.... .-+..+|...|-.-.|.|. ..-+++++.|+.+++=.+..
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 3688899999999999999999999999999984443 3477889888877778773 36789999999999877643
Q ss_pred -Cce---eeeeecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 108 -RSL---ACCLKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 108 -~~~---l~~~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
+.+ .....|.+.|.-+++.|+.. -+++.+.|+.|.-+++....-.... +.-..+. .. .-...+|
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--~cr~~~~-~~--------~v~L~~I 287 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--VCREADE-KE--------RVGLYTI 287 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--eeeccCC-cc--------ceeeeeE
Confidence 332 23348889999999999986 4778889998855555442222111 1111111 00 0246788
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
+.+|...+ .++++..|-.+++||...-......+. +. + ...+.+-. ...-.|++++|. .++
T Consensus 288 a~~P~nt~-~faVgG~dqf~RvYD~R~~~~e~~n~~----~~-~----------f~p~hl~~--d~~v~ITgl~Ys-h~~ 348 (559)
T KOG1334|consen 288 AVDPRNTN-EFAVGGSDQFARVYDQRRIDKEENNGV----LD-K----------FCPHHLVE--DDPVNITGLVYS-HDG 348 (559)
T ss_pred ecCCCCcc-ccccCChhhhhhhhcccchhhccccch----hh-h----------cCCccccc--cCcccceeEEec-CCc
Confidence 88998554 499999999999999765332211110 00 0 00000101 226789999985 677
Q ss_pred CEEEEEEcCCcEEEEecC
Q 001321 263 SILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~ 280 (1100)
.-+++.+.|-.|.+++-.
T Consensus 349 sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNKS 366 (559)
T ss_pred cceeeeecccceEEeccc
Confidence 778888999999998543
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.4e-08 Score=119.93 Aligned_cols=177 Identities=11% Similarity=0.128 Sum_probs=129.0
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC---CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~---d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~ 133 (1100)
..|.+||.++.....+..|..++...+|+|||.+|+.++. +..|.+||+.+++......+++.+.+.+|+|+++.|+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 4899999988877777788889999999999999988864 4679999999987765556677888999999999875
Q ss_pred -EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CC--EEEEEEccC
Q 001321 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSE 209 (1100)
Q Consensus 134 -~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg--~V~lwdl~~ 209 (1100)
+.+.+|...||.++...+.+.+ +..+. .......|+| +|++++..+. +| .|.+||+.+
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~------------~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTTTR----LTDSP------------AIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred EEEecCCCceEEEEECCCCceEE----ccCCC------------CccCceeEcC--CCCEEEEEECCCCCCeEEEEECCC
Confidence 5566777677777766665543 33222 3456678977 7887877664 33 678888887
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC---CcEEEEecCCC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 282 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D---G~I~lWd~~~~ 282 (1100)
+.......+ ...+....|. |+|+.|+....+ ..|.+||..++
T Consensus 324 ~~~~~lt~~------------------------------~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 324 SNPRRISFG------------------------------GGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCeEEeecC------------------------------CCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCC
Confidence 766544322 3345566785 999999887654 25778887543
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=3.3e-09 Score=125.14 Aligned_cols=198 Identities=16% Similarity=0.124 Sum_probs=137.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEE-EEECCC--cEEEEEcCC
Q 001321 34 IPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDN--EIQVWSLES 107 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Ll-s~s~d~--~I~vWd~~s 107 (1100)
+...+...+|+|+++.||..+.+ ..|++|+....+...+..+.+....++|+|||.+|+ +.+.++ .|.+||+.+
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS 281 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCC
Confidence 35568889999999999988744 479999997666555555566667899999998776 445454 599999999
Q ss_pred CceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
++......+.+..+..+|+|++++++..+ .+|...||.++..++..... ...+ ......+|+|
T Consensus 282 g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l--t~~g--------------~~~~~~~~Sp 345 (433)
T PRK04922 282 RQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL--TFQG--------------NYNARASVSP 345 (433)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--ecCC--------------CCccCEEECC
Confidence 88765555556667899999999887665 56676778777655554431 1111 2344678988
Q ss_pred CCCCCEEEEEEcCC---EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC
Q 001321 187 NSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg---~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~ 263 (1100)
+|+.++....++ .|.+||+.+++...+. + ........|. |||+
T Consensus 346 --DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~------------------------------~~~~~~p~~s-pdG~ 391 (433)
T PRK04922 346 --DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P------------------------------GSLDESPSFA-PNGS 391 (433)
T ss_pred --CCCEEEEEECCCCceeEEEEECCCCCeEECC-C------------------------------CCCCCCceEC-CCCC
Confidence 788777665443 6899999887655332 1 1112335675 9999
Q ss_pred EEEEEEcC---CcEEEEecCC
Q 001321 264 ILAVGYID---GDILLWNTST 281 (1100)
Q Consensus 264 ~l~sg~~D---G~I~lWd~~~ 281 (1100)
+|+..+.+ +.|.+|+...
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEEEecCCceEEEEEECCC
Confidence 88877653 3577777643
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.6e-08 Score=118.73 Aligned_cols=177 Identities=11% Similarity=0.100 Sum_probs=123.2
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC---CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~---d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~ 133 (1100)
..|.+||.++.....+..+..++...+|+|||.+|+.++. +..|.+||+.+++.......++.+.+.+|+|++++|+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 3799999987766656667789999999999999987653 3569999999987655555666677899999999888
Q ss_pred EE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-C--EEEEEEccC
Q 001321 134 IG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSE 209 (1100)
Q Consensus 134 ~G-~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-g--~V~lwdl~~ 209 (1100)
.. +.+|...||.++...+.+.+ +..+. ..+....|+| +|++|+..+.+ + .|.++|+.+
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~----lt~~~------------~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQ----VTDGR------------SNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEE----ccCCC------------CCcCceEECC--CCCEEEEEeCCCCCceEEEEECCC
Confidence 65 55666556666655555543 22222 4567889988 78878777764 4 444456666
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC---CcEEEEecCCC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 282 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D---G~I~lWd~~~~ 282 (1100)
+....+... .......+| +|||++|+..+.+ ..|.+||+.++
T Consensus 321 g~~~~lt~~------------------------------~~~~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 321 GAPQRITWE------------------------------GSQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCeEEeecC------------------------------CCCccCEEE-CCCCCEEEEEEccCCCceEEEEECCCC
Confidence 655443221 223445677 4999999877654 35888898765
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=6.3e-09 Score=122.92 Aligned_cols=200 Identities=10% Similarity=0.042 Sum_probs=139.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEE-EEECCC--cEEEEEcC
Q 001321 33 GIPATASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDN--EIQVWSLE 106 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~---dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Ll-s~s~d~--~I~vWd~~ 106 (1100)
.+...+.+.+|+||++.||..+. +..|++|++.+.+...+..+.+.+...+|+|||..|+ +.+.++ .|.+||+.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 278 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR 278 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence 45668999999999999998874 3689999997776666667777888999999998876 444454 48888999
Q ss_pred CCceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 107 s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
++.......+.+..+...|+|++++++..+ .+|...||.++.+.+.... +.... ..+....|+
T Consensus 279 ~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~----lt~~~------------~~~~~~~~S 342 (435)
T PRK05137 279 SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR----ISFGG------------GRYSTPVWS 342 (435)
T ss_pred CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE----eecCC------------CcccCeEEC
Confidence 987766556666778899999999888766 4665566766665555443 22111 345667898
Q ss_pred cCCCCCEEEEEEcC-C--EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 186 PNSSGNRVLIAYEN-A--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 186 P~~~g~~ll~~~~d-g--~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
| +|++|+....+ + .|.+||+.++...... . ...+.+..|. |||
T Consensus 343 p--dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~------------------------------~~~~~~p~~s-pDG 388 (435)
T PRK05137 343 P--RGDLIAFTKQGGGQFSIGVMKPDGSGERILT-S------------------------------GFLVEGPTWA-PNG 388 (435)
T ss_pred C--CCCEEEEEEcCCCceEEEEEECCCCceEecc-C------------------------------CCCCCCCeEC-CCC
Confidence 8 68877766543 2 5778887665432221 1 1124456775 999
Q ss_pred CEEEEEEcCC------cEEEEecCCC
Q 001321 263 SILAVGYIDG------DILLWNTSTT 282 (1100)
Q Consensus 263 ~~l~sg~~DG------~I~lWd~~~~ 282 (1100)
+.|+..+.++ .|.++|+..+
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCC
Confidence 9987765532 4666666543
No 225
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.1e-08 Score=120.21 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=124.9
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~ 133 (1100)
..|.++|.++........+..++...+|+|||.+|+.++.+ ..|.+||+.+++.......++.+.+.+|+|+++.++
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 47888888776666666788899999999999999887743 359999999987665555667788999999999887
Q ss_pred E-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEc--cC
Q 001321 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDV--SE 209 (1100)
Q Consensus 134 ~-G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl--~~ 209 (1100)
. .+.+|...||.++...+.+.+ +..+. ..+....|+| +|++++..+. +|...||.+ .+
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRR----LTQSS------------GIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEE----CCCCC------------CCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC
Confidence 4 677888899999876555443 33222 3355678988 7887776664 455566654 44
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC---cEEEEecCCC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG---~I~lWd~~~~ 282 (1100)
+........ ........| +|||++|+..+.++ .|.+||+.++
T Consensus 318 g~~~~lt~~------------------------------g~~~~~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 318 GAAQRVTFT------------------------------GSYNTSPRI-SPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CceEEEecC------------------------------CCCcCceEE-CCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 444332211 112234567 59999998777654 5999998765
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.11 E-value=6.3e-10 Score=120.26 Aligned_cols=127 Identities=16% Similarity=0.260 Sum_probs=95.0
Q ss_pred CCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCc
Q 001321 493 SVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAK 572 (1100)
Q Consensus 493 ~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~ 572 (1100)
|..-++-+|+.+|+|.+|.-...+.. +.+-.|.++|.+|++.++|+|+|+++.|..|+|||+....
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePL-----------vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--- 326 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPL-----------VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--- 326 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchH-----------HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---
Confidence 44447889999999999988766643 4567899999999999999999999999999999998741
Q ss_pred ceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe-cCC----ceEEEEeecCCCC
Q 001321 573 NFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD-MNL----LSVLFFTDDISGS 647 (1100)
Q Consensus 573 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD-~~~----~~~~~~~~~~~~~ 647 (1100)
-..++.. +-+...|+||..| +||.|..+. |.||. ... ....|..|. .
T Consensus 327 ----------------------ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~-v~iw~d~~~~s~~~~~pYm~H~---~ 378 (545)
T KOG1272|consen 327 ----------------------QLHTYRT-PHPASNLSLSQKG-LLALSYGDH-VQIWKDALKGSGHGETPYMNHR---C 378 (545)
T ss_pred ----------------------ccceeec-CCCcccccccccc-ceeeecCCe-eeeehhhhcCCCCCCcchhhhc---c
Confidence 0122222 5678899999988 578777665 89994 322 223333343 4
Q ss_pred CCCeEEEEEeeccc
Q 001321 648 SSPIISMTWTEFKN 661 (1100)
Q Consensus 648 ~~~V~sl~fs~~~~ 661 (1100)
.++|..|.|.++.+
T Consensus 379 ~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 379 GGPVEDLRFCPYED 392 (545)
T ss_pred CcccccceeccHHH
Confidence 55999999997653
No 227
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.08 E-value=9.6e-10 Score=120.41 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=137.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~ 112 (1100)
|.+.+.|-.|+|+|.-|.++++||.|++|...+.-.-.......+|.|++|.|+..-++- +..+++.+=.+.-. +++.
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~n~k~i~ 181 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAANSKIIR 181 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeecccccceeE
Confidence 677899999999999999999999999999988766666777889999999999665554 44667777666554 4455
Q ss_pred eeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 113 CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 113 ~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
--.|.+-|.|++|++..+.+++|++|-..+|||-- |... |+-.. +.-+|++|+|+| + +.
T Consensus 182 WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~---G~~L---f~S~~------------~ey~ITSva~np--d-~~ 240 (737)
T KOG1524|consen 182 WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ---GANL---FTSAA------------EEYAITSVAFNP--E-KD 240 (737)
T ss_pred EeccCcEEEEeecCccccceeecCCceeEEeeccc---Cccc---ccCCh------------hccceeeeeecc--c-cc
Confidence 55899999999999999999999999999999843 2222 22233 337899999988 4 32
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++ +|+..+.+ +. .. +.+.|..+.|. +||..+++|+..|
T Consensus 241 ~~---------v~S~nt~R----~~--------~p--------------------~~GSifnlsWS-~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 241 YL---------LWSYNTAR----FS--------SP--------------------RVGSIFNLSWS-ADGTQATCGTSTG 278 (737)
T ss_pred ee---------eeeeeeee----ec--------CC--------------------CccceEEEEEc-CCCceeeccccCc
Confidence 33 33333322 11 11 16789999995 9999999999999
Q ss_pred cEEEEe
Q 001321 273 DILLWN 278 (1100)
Q Consensus 273 ~I~lWd 278 (1100)
.+.+=-
T Consensus 279 ~v~~A~ 284 (737)
T KOG1524|consen 279 QLIVAY 284 (737)
T ss_pred eEEEee
Confidence 887643
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=9.7e-09 Score=120.74 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=131.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEE-EEECCCcEEEE--EcC
Q 001321 33 GIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVW--SLE 106 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Ll-s~s~d~~I~vW--d~~ 106 (1100)
..+..+.+.+|+|+++.||..+.+ ..|++|++.+.+...+....+.+...+|+|||..|+ +.+.++...+| |+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 346678899999999999988753 469999997766555555556678999999998887 45667765555 555
Q ss_pred CCceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 107 SRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 107 s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
++.......+.+.++...|+|++++++..+ .+|...||.++...+..... ...+ .......|+
T Consensus 273 ~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l--t~~g--------------~~~~~~~~S 336 (427)
T PRK02889 273 GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV--TFTG--------------SYNTSPRIS 336 (427)
T ss_pred CCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE--ecCC--------------CCcCceEEC
Confidence 555444334555677889999999887655 46788899988765554431 1111 223456787
Q ss_pred cCCCCCEEEEEEcCC---EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 186 PNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg---~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
| +|++++..+.++ .|.+||+.+++....... .......|. |||
T Consensus 337 p--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-------------------------------~~~~~p~~s-pdg 382 (427)
T PRK02889 337 P--DGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-------------------------------TRDESPSFA-PNG 382 (427)
T ss_pred C--CCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-------------------------------CCccCceEC-CCC
Confidence 7 788787766554 689999998876543211 112345775 999
Q ss_pred CEEEEEEcCC
Q 001321 263 SILAVGYIDG 272 (1100)
Q Consensus 263 ~~l~sg~~DG 272 (1100)
+.|+..+.++
T Consensus 383 ~~l~~~~~~~ 392 (427)
T PRK02889 383 RYILYATQQG 392 (427)
T ss_pred CEEEEEEecC
Confidence 9988877654
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.07 E-value=7e-08 Score=100.39 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=125.2
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc---eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~---~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
-..||++.+|++|+..++.+...+.|.|+...... ..+++ .|...|++++|+|..+.+++++.|..-+||.... +
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~-~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS-G 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC-C
Confidence 34689999999999999999999999999987765 45555 7889999999999999999999999899998742 2
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCC
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~ 230 (1100)
++-.+. ..+..++ .++++|.|+| ..+.+++|+....|.||=++...---.-.| ++
T Consensus 88 ~~Wkpt-lvLlRiN------------rAAt~V~WsP--~enkFAVgSgar~isVcy~E~ENdWWVsKh----ik------ 142 (361)
T KOG1523|consen 88 GTWKPT-LVLLRIN------------RAATCVKWSP--KENKFAVGSGARLISVCYYEQENDWWVSKH----IK------ 142 (361)
T ss_pred Ceeccc-eeEEEec------------cceeeEeecC--cCceEEeccCccEEEEEEEecccceehhhh----hC------
Confidence 333322 2233333 7899999998 566699999999998887665432211111 00
Q ss_pred CCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 231 ~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
...+..|+++.|+ |++-.++.|+.|+..+++..
T Consensus 143 ---------------kPirStv~sldWh-pnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 143 ---------------KPIRSTVTSLDWH-PNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred ---------------Cccccceeeeecc-CCcceecccccCcceeEEEE
Confidence 0116789999998 99999999999999999985
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=2.4e-08 Score=103.85 Aligned_cols=178 Identities=16% Similarity=0.265 Sum_probs=133.8
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC-CCceeeee---ecCCCeEEEEEecCCCEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL---KWESNITAFSVISGSHFM 132 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~-s~~~l~~~---~~~~~Vt~~~~s~~~~~l 132 (1100)
+.+.|||--....+.+..-..+|+++.+.++. ++.+ .++.|.||... .-++++.+ ..+..+.++.-.....+|
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 58999997666777888889999999999983 4444 48999999988 44555554 323344444444444455
Q ss_pred EE-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC-EEEEEEccCC
Q 001321 133 YI-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEA 210 (1100)
Q Consensus 133 ~~-G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg-~V~lwdl~~~ 210 (1100)
|. |..-|.|+|.++...... .|..+++|. ..|.|++. +-+|+++++++..| .|||||..++
T Consensus 152 afPg~k~GqvQi~dL~~~~~~---~p~~I~AH~------------s~Iacv~L--n~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN---APSIINAHD------------SDIACVAL--NLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC---CceEEEccc------------CceeEEEE--cCCccEEEEeccCcEEEEEEEcCCC
Confidence 54 456799999998764322 346688887 99999999 44899999999999 5689999999
Q ss_pred EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
..++.+.. -. ....|.+++| +|++.+|+++++-|+|.++.+...
T Consensus 215 ~~l~E~RR-------G~--------------------d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 TLLQELRR-------GV--------------------DRADIYCIAF-SPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEeeeeec-------CC--------------------chheEEEEEe-CCCccEEEEEcCCCeEEEEEeecC
Confidence 87654321 11 1678999997 599999999999999999998764
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.5e-09 Score=116.44 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=98.0
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee--ecCCCeEEEEEecCC--CEEEEEeCCCcEEEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS--HFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~--~~l~~G~~dG~V~Iw~~ 146 (1100)
.+.+|.+.|..|.|...|..|+|++.|..|.+||+.++.....+ .|...|.--.|.|.. .-+++.+.||.|++-.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 34579999999999999999999999999999999999887776 666677666677753 57888899999988776
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
.......- +-.+..|. ++|.-++.-|..... |++++.|+.|.-+|++.+..
T Consensus 217 ~~t~~~e~--t~rl~~h~------------g~vhklav~p~sp~~-f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 217 LETGYVEN--TKRLAPHE------------GPVHKLAVEPDSPKP-FLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred ccccceec--ceeccccc------------CccceeeecCCCCCc-ccccccccceeeeeeccCCc
Confidence 64322211 12233333 888888888864444 99999999999999888754
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.5e-06 Score=98.75 Aligned_cols=212 Identities=18% Similarity=0.180 Sum_probs=146.1
Q ss_pred cCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce------E----------EEeCCCCCCEEEEEEEeCCCEEEE
Q 001321 32 YGIPA--TASILAFDHIQRLLAIATLDGRIKVIGGDGIE------G----------LLISPSQLPYKNLEFLQNQGFLIS 93 (1100)
Q Consensus 32 ~G~~~--~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~------~----------~~~~~h~~~V~~l~fs~d~~~Lls 93 (1100)
.|+|. +..|++|+..+.++|+|+.||.++|--+.... . ..+-+|.+.|..+.|..+.+.|-+
T Consensus 9 i~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 9 IGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred cCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 45555 45799999999999999999999998653210 0 134579999999999999899999
Q ss_pred EECCCcEEEEEcCCCceeeee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 94 ITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 94 ~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
.+.+|-|.||-+..+.-...+ ...+.|.+++|+.+|..+.+.-+||.|.|=.+|. +++-. -.+.+
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG--NRIwg--KeLkg-------- 156 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG--NRIWG--KELKG-------- 156 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc--ceecc--hhcch--------
Confidence 999999999999888665444 3346799999999999999999999887665553 11110 01221
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
.-...+.|+| +...++.+-.+|.+.+||-..+-.... ...|++.. .|... ..+.
T Consensus 157 ------~~l~hv~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl------~~~c~Vn~--tg~~s----------~~~~ 210 (1189)
T KOG2041|consen 157 ------QLLAHVLWSE--DLEQALFKKANGETHLYDNQGNFERKL------EKDCEVNG--TGIFS----------NFPT 210 (1189)
T ss_pred ------heccceeecc--cHHHHHhhhcCCcEEEecccccHHHhh------hhceEEee--eeeec----------CCCc
Confidence 2245788977 566688888999999999876521100 00000000 00000 0144
Q ss_pred ceEEEEEec-------CCCCEEEEEEcCCcEEEEecCC
Q 001321 251 EISALCWAS-------SSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 251 ~V~sl~w~s-------pdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.|..++|++ |+...+++++.+|.+.+-.-.+
T Consensus 211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 567777762 5778899999999988765443
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=1.2e-09 Score=118.21 Aligned_cols=195 Identities=14% Similarity=0.221 Sum_probs=159.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
....+.|+.+|+.|+.|+..|.|-.+|.....+.++..-...|..+.|..+. .++++...+.+.|||- .|.-++++.-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEecC-CCcEEeehhh
Confidence 4667999999999999999999999999999999888888899999999884 4556667899999995 4556667767
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 117 ~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
...|..+.|-|..-+|++++..|.++..|+.+ |++... +..-. +.+..+.-+|. ...+-+|
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~--GklVa~---~~t~~------------G~~~vm~qNP~--NaVih~G 269 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVST--GKLVAS---IRTGA------------GRTDVMKQNPY--NAVIHLG 269 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeech--hhhhHH---HHccC------------CccchhhcCCc--cceEEEc
Confidence 77899999999999999999999887777664 565532 22211 67777788773 4447889
Q ss_pred EcCCEEEEEEccCCEE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEE
Q 001321 197 YENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDIL 275 (1100)
Q Consensus 197 ~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~ 275 (1100)
-.+|+|.+|+-...+. +....| .+.|.+++.. ++|.+++|.+.|..++
T Consensus 270 hsnGtVSlWSP~skePLvKiLcH------------------------------~g~V~siAv~-~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILCH------------------------------RGPVSSIAVD-RGGRYMATTGLDRKVK 318 (545)
T ss_pred CCCceEEecCCCCcchHHHHHhc------------------------------CCCcceEEEC-CCCcEEeeccccccee
Confidence 9999999999888765 345556 8889999975 9999999999999999
Q ss_pred EEecCCCC
Q 001321 276 LWNTSTTA 283 (1100)
Q Consensus 276 lWd~~~~~ 283 (1100)
+||+..-.
T Consensus 319 IWDlR~~~ 326 (545)
T KOG1272|consen 319 IWDLRNFY 326 (545)
T ss_pred Eeeecccc
Confidence 99997654
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.01 E-value=8.4e-06 Score=93.10 Aligned_cols=149 Identities=15% Similarity=0.250 Sum_probs=94.9
Q ss_pred CcEEEEEc--CCCcee--eeeecCCCeEEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001321 98 NEIQVWSL--ESRSLA--CCLKWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 98 ~~I~vWd~--~s~~~l--~~~~~~~~Vt~~~~s~~~~~l~~G~~----dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
+.|.+|++ .++++. ...........++++|++++|++..+ .|.|..|.++.+.+++... -+.+...
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~-~~~~~~g----- 86 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL-NSVPSGG----- 86 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE-EEEEESS-----
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe-eeeccCC-----
Confidence 67888887 555543 33345567888999999999999987 5789999998876777753 1222111
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEE-EcCCEEEEEEccC-CEEEE---EecCCcccccccccCCCCCCCCccccCCCC
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSE-AQIIF---VGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~-~~dg~V~lwdl~~-~~~~~---~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
...+.++..| ++.+|+++ |.+|.|.++++.. +.+.. ...|.+. |.. .
T Consensus 87 -------~~p~~i~~~~--~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-----------------g~~--~ 138 (345)
T PF10282_consen 87 -------SSPCHIAVDP--DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-----------------GPN--P 138 (345)
T ss_dssp -------SCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-----------------ESS--T
T ss_pred -------CCcEEEEEec--CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-----------------CCc--c
Confidence 5678999977 67766665 4689999999987 44432 2222000 000 0
Q ss_pred CCCCCCceEEEEEecCCCCEEEEEEc-CCcEEEEecCC
Q 001321 245 HQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spdg~~l~sg~~-DG~I~lWd~~~ 281 (1100)
.........++.|. |+|+++++... ...|.+|++..
T Consensus 139 ~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 139 DRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeC
Confidence 11124566778875 99998887654 23577777643
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.99 E-value=6.6e-07 Score=102.07 Aligned_cols=106 Identities=17% Similarity=0.283 Sum_probs=74.7
Q ss_pred EEEEECCCcEEEEEcCCCceeeeeecCCCeE-EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001321 91 LISITNDNEIQVWSLESRSLACCLKWESNIT-AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 91 Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt-~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
+++-..++.|.|.|..+.+.+..+...+.+. .+.++|+++++++.+.+|.|.++|+.. +++... ++.-
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~--~~~v~~---i~~G------ 77 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT--GKVVAT---IKVG------ 77 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS--SSEEEE---EE-S------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc--ccEEEE---EecC------
Confidence 3455568999999999999999997666654 467899999999999999998888765 444432 3321
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEE-EcCCEEEEEEccCCEEEEEe
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIA-YENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~-~~dg~V~lwdl~~~~~~~~~ 216 (1100)
....+++++| +|++++++ +..+.|.++|..+.+++...
T Consensus 78 -------~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 78 -------GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp -------SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred -------CCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeec
Confidence 4468899966 78877755 67899999999998876543
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=5.6e-08 Score=114.70 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=121.9
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~ 133 (1100)
..|.+||.++.....+..|..++...+|+|||.+|+.++.+ ..|.+||+.+++.......++...+.+|+|++++++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 46999999877766667788899999999999999988743 469999999887655555566677899999999876
Q ss_pred E-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CC--EEEEEEccC
Q 001321 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSE 209 (1100)
Q Consensus 134 ~-G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg--~V~lwdl~~ 209 (1100)
. .+.+|.-.||.++...+.+.+ +..+. .......|+| +|++++.++. +| .|.++|+.+
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~------------~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLTR----LTNHF------------GIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeEE----CccCC------------CCccceEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 4 455665344444444455443 22222 3345678987 7887777664 44 366667767
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC---cEEEEecCCC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG---~I~lWd~~~~ 282 (1100)
+.......+ .......+|. |+|++|+..+.++ .|.+||+.++
T Consensus 326 g~~~~lt~~------------------------------g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 326 GSAERLTFQ------------------------------GNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCeEEeecC------------------------------CCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCC
Confidence 665443211 2223356774 9999998776443 5899998765
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.1e-08 Score=105.56 Aligned_cols=194 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee----
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA---- 111 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l---- 111 (1100)
.+.-+||++.---+|+++.|-.||+|+....+ ..+.......|++|+|-|.+.--++++..+-|.+|........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNI 179 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccccc
Confidence 45568999877789999999999999986544 3455666778999999998777777777788999987543211
Q ss_pred --------eeeecC--CCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 112 --------CCLKWE--SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 112 --------~~~~~~--~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
..+.++ ..|+++.+.+++..+++++ .+..|.||+.+...+... +.. ..+.+.
T Consensus 180 ~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL------~~~-----------glgg~s 242 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL------IPK-----------GLGGFS 242 (445)
T ss_pred ccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc------ccc-----------CCCcee
Confidence 112333 4799999999999888876 578899999887443322 111 127788
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
-+.|+| +|..++++.-|+..++|+....-..... . + ..++|+..||. |
T Consensus 243 lLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw-----~----l--------------------gsgrvqtacWs-p 290 (445)
T KOG2139|consen 243 LLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERW-----I----L--------------------GSGRVQTACWS-P 290 (445)
T ss_pred eEEEcC--CCCEEEEecccceeeeehhcccceecce-----e----c--------------------cCCceeeeeec-C
Confidence 999988 7888999999999999976544221110 0 0 16799999996 9
Q ss_pred CCCEEEEEEcCCcEEEEecC
Q 001321 261 SGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~ 280 (1100)
+|++|+-.+. |+=++|.+.
T Consensus 291 cGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 291 CGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred CCCEEEEEEc-CCceEEEEe
Confidence 9998887765 445566653
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.96 E-value=2.1e-08 Score=103.83 Aligned_cols=110 Identities=7% Similarity=0.203 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCc
Q 001321 35 PATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRS 109 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs--~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~ 109 (1100)
.+.|.+++|+|+++.+|+.. .++.|.+|+.+...+... +..++..+.|+|+|++|+.++.+ |.|.+||+++.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 34699999999999877664 457999999974444333 35678899999999999998754 569999999999
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEeC------CCcEEEEEEe
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGDE------NGLMSVIKYD 147 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~~------dG~V~Iw~~d 147 (1100)
.+....+.. ++.++|+|++++++++.. |..++||++.
T Consensus 137 ~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 988887665 789999999999998864 5678999987
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=3.2e-08 Score=105.57 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=99.6
Q ss_pred CcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcce
Q 001321 495 DRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNF 574 (1100)
Q Consensus 495 ~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~ 574 (1100)
.+.++|++.-+.||+||...+. ++ +.++++. ..+|+++...|++..+.+|...|.+..||++...-
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qR-RP-------V~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl---- 281 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQR-RP-------VAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL---- 281 (412)
T ss_pred CceEEEEecceeEEEecCcccC-cc-------eeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCcee----
Confidence 5689999999999999998654 22 2223333 35899999999999999999999999999988621
Q ss_pred eeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEE
Q 001321 575 LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISM 654 (1100)
Q Consensus 575 ~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl 654 (1100)
....+.+..|.|+++..+|.+.+||+++-|..|+|+|+.+..+++++.+ .+..++|
T Consensus 282 --------------------~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv----Ks~lt~i 337 (412)
T KOG3881|consen 282 --------------------LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV----KSRLTFI 337 (412)
T ss_pred --------------------eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh----hccccEE
Confidence 1223678899999999999999999999999999999999777755544 4455566
Q ss_pred EEe
Q 001321 655 TWT 657 (1100)
Q Consensus 655 ~fs 657 (1100)
-+.
T Consensus 338 l~~ 340 (412)
T KOG3881|consen 338 LLR 340 (412)
T ss_pred Eec
Confidence 554
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.95 E-value=2e-07 Score=110.10 Aligned_cols=177 Identities=14% Similarity=0.140 Sum_probs=123.4
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~ 133 (1100)
..|.+++.++.....+..+...+...+|+|||.+|+.++.+ ..|.+||+.+++......+.+.+.+++|+|+++.++
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 46888888766555556677789999999999999987754 479999999987665556667788899999998776
Q ss_pred E-EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-C--EEEEEEccC
Q 001321 134 I-GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVSE 209 (1100)
Q Consensus 134 ~-G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-g--~V~lwdl~~ 209 (1100)
. .+.++...||.++..++...+ +..+. .......|+| +|++|+..+.. + .|.+||+.+
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~~----l~~~~------------~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLTR----LTNGP------------GIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EEECCCCCccEEEEECCCCCEEE----CCCCC------------CCCCCEEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence 4 455665455555554454443 22211 2334567877 78777766653 3 577788877
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC---cEEEEecCCC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTSTT 282 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG---~I~lWd~~~~ 282 (1100)
++...+..+ ...+....|. |+|++|+.++.++ .|.+||+.++
T Consensus 312 ~~~~~l~~~------------------------------~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 312 GEVRRLTFR------------------------------GGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCEEEeecC------------------------------CCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCC
Confidence 765444322 3345566775 9999999888776 7888888754
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.95 E-value=9.9e-08 Score=98.76 Aligned_cols=152 Identities=11% Similarity=0.136 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCEEEEEEC-C---------CeEEEEeC--CCceE-EEeCCCCCCEEEEEEEeCCCEEEEEE--CCCcEEE
Q 001321 38 ASILAFDHIQRLLAIATL-D---------GRIKVIGG--DGIEG-LLISPSQLPYKNLEFLQNQGFLISIT--NDNEIQV 102 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~-d---------G~I~vw~~--~~~~~-~~~~~h~~~V~~l~fs~d~~~Lls~s--~d~~I~v 102 (1100)
-..+.|+|.|..|++-+. + |...||-+ ..... .+.....++|.+++|+|+|..++.+. .+..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 345889999988877655 1 45566655 33322 34455667899999999998876654 4678999
Q ss_pred EEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC---CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 103 Wd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~---dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
||++ .+.+..+. ...+..+.|+|+++++++|+- .|.|.+||.+. .+... ... . ..+
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~---~~~--~------------~~~ 146 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKIS---TFE--H------------SDA 146 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEee---ccc--c------------CcE
Confidence 9997 44444443 467889999999999998863 47799999873 22221 111 1 457
Q ss_pred EEEEeccCCCCCEEEEEEc------CCEEEEEEccCCEE
Q 001321 180 VGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQI 212 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~------dg~V~lwdl~~~~~ 212 (1100)
+.++|+| +|.+++++.. |..++||++....+
T Consensus 147 t~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 147 TDVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEEEEcC--CCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 8999988 7998888775 56779999975543
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.92 E-value=1e-07 Score=112.52 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=130.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEE-ECC--CcEEEEEcCCC
Q 001321 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TND--NEIQVWSLESR 108 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~-s~d--~~I~vWd~~s~ 108 (1100)
+..+...+|+|++++||.++.+ ..|++|+...........+.+.+..++|+||+..|+.. +.+ ..|.+||+.++
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~ 268 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK 268 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC
Confidence 4457788999999999998755 48999999766555555666777889999999877654 333 35999999988
Q ss_pred ceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
.......+........|+|++++|+..+ ..|...||.++...+.... +..+. ..+....|+|
T Consensus 269 ~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~----l~~~~------------~~~~~~~~sp- 331 (417)
T TIGR02800 269 QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR----LTFRG------------GYNASPSWSP- 331 (417)
T ss_pred CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCC------------CCccCeEECC-
Confidence 7655555555566789999999887654 4565566776665554432 22111 3456778977
Q ss_pred CCCCEEEEEEcCC---EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 188 SSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 188 ~~g~~ll~~~~dg---~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
+|++++.+..++ .|.+||+.++....+... .......| +|+|.+
T Consensus 332 -dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-------------------------------~~~~~p~~-spdg~~ 378 (417)
T TIGR02800 332 -DGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-------------------------------GLDESPSF-APNGRM 378 (417)
T ss_pred -CCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-------------------------------CCCCCceE-CCCCCE
Confidence 688788887775 788999887654333211 11223456 499999
Q ss_pred EEEEEcCC
Q 001321 265 LAVGYIDG 272 (1100)
Q Consensus 265 l~sg~~DG 272 (1100)
|+..+.++
T Consensus 379 l~~~~~~~ 386 (417)
T TIGR02800 379 ILYATTRG 386 (417)
T ss_pred EEEEEeCC
Confidence 98887765
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=2.7e-08 Score=110.49 Aligned_cols=200 Identities=11% Similarity=0.183 Sum_probs=151.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCC-CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
|.--..|+|+.-..=|.++.....|+=+++.+...+....-. +++.++..++-.++|++++.+|.|.+||-+++..+.+
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee
Confidence 444455777754444444445677888888887777555444 6899999999878888888899999999999877666
Q ss_pred eec-------CC-----CeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001321 114 LKW-------ES-----NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 114 ~~~-------~~-----~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1100)
+.. ++ .|+++.|+-++-.+++|..+|.|.|+|+...+ |+-+..|. ..-+|..
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~------pl~~kdh~----------~e~pi~~ 276 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK------PLLVKDHG----------YELPIKK 276 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC------ceeecccC----------Cccceee
Confidence 532 23 39999999999999999999999999887633 23344443 1167999
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
+.|.+++.++ .++......++|||-.+|+....... ...+..+|++ |+
T Consensus 277 l~~~~~~~q~-~v~S~Dk~~~kiWd~~~Gk~~asiEp------------------------------t~~lND~C~~-p~ 324 (703)
T KOG2321|consen 277 LDWQDTDQQN-KVVSMDKRILKIWDECTGKPMASIEP------------------------------TSDLNDFCFV-PG 324 (703)
T ss_pred ecccccCCCc-eEEecchHHhhhcccccCCceeeccc------------------------------cCCcCceeee-cC
Confidence 9999986666 56666677889999999987666544 4558889988 89
Q ss_pred CCEEEEEEcCCcEEEEecCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+-+++++-+++.+..|=+...
T Consensus 325 sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceEEEecCCCcceeEEcccc
Confidence 999999999998888776544
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.1e-06 Score=96.13 Aligned_cols=345 Identities=12% Similarity=0.178 Sum_probs=193.7
Q ss_pred CeEEEEeCCC-ceEEEeCCC---CCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEE
Q 001321 57 GRIKVIGGDG-IEGLLISPS---QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1100)
Q Consensus 57 G~I~vw~~~~-~~~~~~~~h---~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l 132 (1100)
-.+.+|.... .......++ ..++...+++++ ++|.+.+.+..+.|++..+...+.+.... .+.++.|+|.+.+|
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~-G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL 88 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNN-GRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYL 88 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCC-CcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeeccccccc
Confidence 4478888744 333333333 346777888888 56777778999999999999655555444 89999999999988
Q ss_pred EEE-------eC---CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEE
Q 001321 133 YIG-------DE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALV 202 (1100)
Q Consensus 133 ~~G-------~~---dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V 202 (1100)
.+= .. .-.+.+|+..+ +.... .|..+.. .. ++.+|++ +.. +++=-..+.|
T Consensus 89 ~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s-~~q~k~Q-------------~~-W~~qfs~--dEs-l~arlv~nev 148 (566)
T KOG2315|consen 89 LTWEPWAIYGPKNASNPNVLVYNVET--GVQRS-QIQKKMQ-------------NG-WVPQFSI--DES-LAARLVSNEV 148 (566)
T ss_pred ccccccccccCCCCCCCceeeeeecc--ceehh-heehhhh-------------cC-ccccccc--chh-hhhhhhcceE
Confidence 642 11 23456777664 22221 0111111 22 5778855 444 5554556678
Q ss_pred EEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC--EEEE-----EEcCCcEE
Q 001321 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS--ILAV-----GYIDGDIL 275 (1100)
Q Consensus 203 ~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~--~l~s-----g~~DG~I~ 275 (1100)
.+|++.+.+.....-| ...|+.+.. +|.+. ++++ .+.-+.++
T Consensus 149 ~f~~~~~f~~~~~kl~------------------------------~~~i~~f~l-Spgp~~~~vAvyvPe~kGaPa~vr 197 (566)
T KOG2315|consen 149 QFYDLGSFKTIQHKLS------------------------------VSGITMLSL-SPGPEPPFVAVYVPEKKGAPASVR 197 (566)
T ss_pred EEEecCCccceeeeee------------------------------ccceeeEEe-cCCCCCceEEEEccCCCCCCcEEE
Confidence 8999888554433222 444555553 35422 2222 24556799
Q ss_pred EEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCC-------CcceEEEEEc
Q 001321 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIG-------SEEVLTVLSL 348 (1100)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g-------~~~~ltvl~l 348 (1100)
+|...-...... +. ..+..+..-+.+.|.. ..+.+|+....+-. .++.|..+..
T Consensus 198 i~~~~~~~~~~~--------~a----~ksFFkadkvqm~WN~-------~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 198 IYKYPEEGQHQP--------VA----NKSFFKADKVQMKWNK-------LGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred Eeccccccccch--------hh----hccccccceeEEEecc-------CCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 998763211110 00 0111222223444433 22334433222111 1234444444
Q ss_pred CCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCc
Q 001321 349 EWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPG 428 (1100)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~ 428 (1100)
.... ..+.+...++|-|+.+.|.+. ..+++-...+..+-+||.....++...+
T Consensus 259 ~g~s--------~~V~L~k~GPVhdv~W~~s~~------EF~VvyGfMPAkvtifnlr~~~v~df~e------------- 311 (566)
T KOG2315|consen 259 QGES--------VSVPLLKEGPVHDVTWSPSGR------EFAVVYGFMPAKVTIFNLRGKPVFDFPE------------- 311 (566)
T ss_pred cCce--------EEEecCCCCCceEEEECCCCC------EEEEEEecccceEEEEcCCCCEeEeCCC-------------
Confidence 3111 137778888999999999853 1122222333333333322221111111
Q ss_pred ccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEe---cCC
Q 001321 429 VIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY---HDG 505 (1100)
Q Consensus 429 ~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~---~DG 505 (1100)
+..+++.++|.+++++.++ --|
T Consensus 312 -------------------------------------------------------gpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 312 -------------------------------------------------------GPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred -------------------------------------------------------CCccceEECCCCCEEEEeecCCCCC
Confidence 1224557899999888764 458
Q ss_pred cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEec------CceEEEEEecCC
Q 001321 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE------FGLVYIYNLNGS 568 (1100)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~------dG~V~lw~l~~~ 568 (1100)
.|-|||+....+. ..+.. ..-+-..|+|||.++.+++. |+-++||++...
T Consensus 337 ~mEvwDv~n~K~i-----------~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 337 DMEVWDVPNRKLI-----------AKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ceEEEeccchhhc-----------ccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 8999999986643 11111 23456789999999999887 578999999886
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.90 E-value=1.6e-06 Score=95.76 Aligned_cols=161 Identities=12% Similarity=0.194 Sum_probs=110.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---------------C
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---------------N 98 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---------------~ 98 (1100)
.+-++....|||.|.+||..+..| |.+|+......+....|.. |..+.|+|++.||.+=+.. +
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCC-ceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 566788999999999999988654 8999998777777777765 9999999999999986543 4
Q ss_pred cEEEEEcCCCceeeeeecC-CC--eE-EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001321 99 EIQVWSLESRSLACCLKWE-SN--IT-AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 99 ~I~vWd~~s~~~l~~~~~~-~~--Vt-~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
.+.|||+.++.++..+... .+ .. -+.|+.+..++|=- ....++|+++ + +.+.+.|+. .+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t--~n~~~~p~~----~l--------- 171 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-T--DNIEEHPFK----NL--------- 171 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-C--CccccCchh----hc---------
Confidence 5999999999999888332 22 33 66777777766543 2334667665 2 333332221 11
Q ss_pred CCCCeEEEEeccCCCCCEEEE-----EEcCCEEEEEEccCCEEE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLI-----AYENALVILWDVSEAQII 213 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~-----~~~dg~V~lwdl~~~~~~ 213 (1100)
+...|...+|+|..++..|+. ....+.+++|.+..+.++
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 125678888888655553332 234568888888766543
No 246
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=5.9e-06 Score=94.05 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=90.6
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCC-CCCCCCCeEEEEeccCCCCCEEE
Q 001321 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF-PLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
...+..|++|+....++++|+.+|.++|.++++++......+..-+. . -++.. -.+|...|.-+.|+- ....|-
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s-n--LsmNQtLeGH~~sV~vvTWNe--~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS-N--LSMNQTLEGHNASVMVVTWNE--NNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc-c--cchhhhhccCcceEEEEEecc--cccccc
Confidence 34578899999999999999999999999998754333321100000 0 00000 123448999999944 566688
Q ss_pred EEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcE
Q 001321 195 IAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDI 274 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I 274 (1100)
++..+|.|.+|-+-.+.-...... .-....|.+++|. .||..|...+.||.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiN---------------------------nRnKSvV~SmsWn-~dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMIN---------------------------NRNKSVVVSMSWN-LDGTKICIVYEDGAV 139 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhh---------------------------CcCccEEEEEEEc-CCCcEEEEEEccCCE
Confidence 999999999998765532111100 0015678899997 899999999999999
Q ss_pred EEEecC
Q 001321 275 LLWNTS 280 (1100)
Q Consensus 275 ~lWd~~ 280 (1100)
.+=.+.
T Consensus 140 IVGsvd 145 (1189)
T KOG2041|consen 140 IVGSVD 145 (1189)
T ss_pred EEEeec
Confidence 886654
No 247
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=7.5e-07 Score=102.30 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=110.6
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCC------------CEEEEEeCCCcE
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGS------------HFMYIGDENGLM 141 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~------------~~l~~G~~dG~V 141 (1100)
|...-.++.|+|.| |++.++.+.|.|-|..+-+.+.++ .|...|+.+.|.|-. -.+|+++..|.|
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33346778899998 899998999999999999999888 566789999998632 367888999999
Q ss_pred EEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC-CCC-CEEEEEEcCCEEEEEEccCCEEEEEecCC
Q 001321 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSG-NRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1100)
Q Consensus 142 ~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~-~~g-~~ll~~~~dg~V~lwdl~~~~~~~~~~~~ 219 (1100)
-+||+... ... ..+..+. .++..+.|-|. ++. ..|+.-.....+.+|+..+|+..-.+.+.
T Consensus 92 il~d~~~~--s~~---~~l~~~~------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 92 ILVDFVLA--SVI---NWLSHSN------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred EEEEehhh--hhh---hhhcCCC------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 99998742 111 1133333 66777777664 333 45677777889999999999876544331
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 220 ~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.....|+.+..-|.+++...+..|.+.+-+...
T Consensus 155 -----------------------------~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 155 -----------------------------HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred -----------------------------CcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 222334554422456677777778777776543
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=2.6e-07 Score=109.05 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=109.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEE-ECCCc--EEEEEcCCC
Q 001321 35 PATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISI-TNDNE--IQVWSLESR 108 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~-s~d~~--I~vWd~~s~ 108 (1100)
+..+...+|+|||+.||..+.+ ..|++|+..+.+...+....+.....+|+|||.+|+.. +.++. |.+||+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 4456789999999999987653 36888998765554444334445678999999988754 44554 888899988
Q ss_pred ceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+......+.......+|+|++++++..+ .+|...||.++..+++.... ...+ .......|+|
T Consensus 297 ~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L--t~~g--------------~~~~~~~~Sp- 359 (448)
T PRK04792 297 ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL--TFEG--------------EQNLGGSITP- 359 (448)
T ss_pred CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE--ecCC--------------CCCcCeeECC-
Confidence 7665555556678899999999887655 46777888888766665432 1111 1223457877
Q ss_pred CCCCEEEEEEc-CC--EEEEEEccCCEEEE
Q 001321 188 SSGNRVLIAYE-NA--LVILWDVSEAQIIF 214 (1100)
Q Consensus 188 ~~g~~ll~~~~-dg--~V~lwdl~~~~~~~ 214 (1100)
+|+.++.... ++ .|.++|+.++....
T Consensus 360 -DG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 360 -DGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred -CCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 6776766544 44 45567777776543
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=3.6e-07 Score=108.15 Aligned_cols=163 Identities=14% Similarity=0.081 Sum_probs=112.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEE-EECCC--cEEEEEcCC
Q 001321 34 IPATASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLIS-ITNDN--EIQVWSLES 107 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls-~s~d~--~I~vWd~~s 107 (1100)
....+...+|+|+++.||..+.+ ..|++|++++.+...+....+.+...+|+|||.+|+. .+.++ .|.+||+.+
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 34567889999999999887644 4799999976665555555556678999999988874 44444 688899999
Q ss_pred CceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 108 RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
++......+....+...|+|++++++..+ .+|...||.++...+...+. ...+ .......|+|
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l--t~~~--------------~~~~~~~~Sp 340 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV--TFVG--------------NYNARPRLSA 340 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe--ecCC--------------CCccceEECC
Confidence 87665555556677889999999876554 46666777777655655432 1111 1223457877
Q ss_pred CCCCCEEEEEEcC-C--EEEEEEccCCEEEE
Q 001321 187 NSSGNRVLIAYEN-A--LVILWDVSEAQIIF 214 (1100)
Q Consensus 187 ~~~g~~ll~~~~d-g--~V~lwdl~~~~~~~ 214 (1100)
+|+.++....+ + .|.+||+.++....
T Consensus 341 --dg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 341 --DGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred --CCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 67767666543 3 57889998876543
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=6.4e-07 Score=106.01 Aligned_cols=176 Identities=11% Similarity=0.041 Sum_probs=120.9
Q ss_pred eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEE
Q 001321 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1100)
Q Consensus 58 ~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~ 134 (1100)
+|.++|.++.....+..+..++...+|+|||.+|+.++.+ ..|.+||+.+++........+.+.+.+|+|++++++.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 5888888877666666778899999999999999887644 3699999999876555555666778999999998874
Q ss_pred -EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CC--EEEEEEccCC
Q 001321 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1100)
Q Consensus 135 -G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg--~V~lwdl~~~ 210 (1100)
...+|.-.||.++..++...+ +..+. .......|+| +|+.++..+. +| .|.++|+.++
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~~----lt~~~------------~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLSR----VTNHP------------AIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred EEccCCCceEEEEECCCCCeEE----cccCC------------CCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 455666566666665555543 22222 3345667877 6777776664 33 5777788777
Q ss_pred EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC-C--cEEEEecCCC
Q 001321 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-G--DILLWNTSTT 282 (1100)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D-G--~I~lWd~~~~ 282 (1100)
+....... ........| +|+|+.|+..+.+ | .|.+||+.++
T Consensus 322 ~~~~lt~~------------------------------~~~~~~~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 322 RAERVTFV------------------------------GNYNARPRL-SADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CEEEeecC------------------------------CCCccceEE-CCCCCEEEEEEccCCceEEEEEECCCC
Confidence 65443211 111223567 4999998877653 3 4788888765
No 251
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=3.4e-08 Score=108.84 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=123.3
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee--ecCCCeEEEEEecCC--CEEEEEeCCCcEEEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS--HFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~--~~l~~G~~dG~V~Iw~~ 146 (1100)
.+.+|++.|.+|.|+.||.+|+|++.|-.+.|||.-..++++++ .|.+.|.|+-|-|.. +.+++|..|..|+++++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 45789999999999999999999999999999999999999888 788999999999864 58889999999999998
Q ss_pred ecCCCe-----eeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE--EecCC
Q 001321 147 DADEGK-----LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF--VGGGK 219 (1100)
Q Consensus 147 d~~~~~-----l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~--~~~~~ 219 (1100)
+...+. +.........| ...|-.|+..|... ..+.++++||+++-+|+++...-. .-.+.
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~ch------------t~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCH------------TDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred ccccccccccCccchhhhhhhh------------hhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccH
Confidence 852111 11000111222 26778888877533 459999999999999998742210 00000
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 220 ~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.+. ... ...-...|+.-...+..+|++|+.|-..++||..
T Consensus 192 ~l~---ny~------------------~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 192 ILV---NYN------------------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHH---Hhc------------------hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 000 000 0011233444332345689999999999999953
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=5.3e-07 Score=105.59 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=127.4
Q ss_pred CCeEEEEEcCCCCEEE---EEECC--CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CC----cEEEEEc
Q 001321 36 ATASILAFDHIQRLLA---IATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DN----EIQVWSL 105 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA---~gs~d--G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~----~I~vWd~ 105 (1100)
..+..-+|+|||+.++ +...+ ..|++.++++.+...+....+.....+|+|||.+|+..+. ++ .+..||+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence 3456679999997533 44444 4677778877665555555666677899999999887764 22 3455787
Q ss_pred CCC---ceeeeeec-CCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCC--CeeeeeceeecccccccccCCCCCCCCC
Q 001321 106 ESR---SLACCLKW-ESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADE--GKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 106 ~s~---~~l~~~~~-~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
..+ ........ .+.....+|+|++++|+..+ .+|...||.++.+. +... .+.... ..
T Consensus 265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----~lt~~~------------~~ 328 (428)
T PRK01029 265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----LLTKKY------------RN 328 (428)
T ss_pred ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE----EeccCC------------CC
Confidence 653 32223322 24457789999999877655 57777788776532 2222 132221 44
Q ss_pred eEEEEeccCCCCCEEEEEEcC---CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 179 VVGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~d---g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
+....|+| +|++|+....+ ..|.+||+.+++...+... ...+.+.
T Consensus 329 ~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~------------------------------~~~~~~p 376 (428)
T PRK01029 329 SSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS------------------------------PENKESP 376 (428)
T ss_pred ccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC------------------------------CCCccce
Confidence 66788988 78877766543 3689999998876554322 2234567
Q ss_pred EEecCCCCEEEEEEc---CCcEEEEecCCC
Q 001321 256 CWASSSGSILAVGYI---DGDILLWNTSTT 282 (1100)
Q Consensus 256 ~w~spdg~~l~sg~~---DG~I~lWd~~~~ 282 (1100)
.|. |||+.|+.... .+.|.+||+.++
T Consensus 377 ~wS-pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 377 SWA-IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEC-CCCCEEEEEECCCCCceEEEEECCCC
Confidence 885 99998875543 346888887655
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.9e-07 Score=99.76 Aligned_cols=195 Identities=14% Similarity=0.183 Sum_probs=146.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCC----ceEEEeCCCCCCEEEEEEEeCCCEEEE-EECC--CcEEEEEcCCCc
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG----IEGLLISPSQLPYKNLEFLQNQGFLIS-ITND--NEIQVWSLESRS 109 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~----~~~~~~~~h~~~V~~l~fs~d~~~Lls-~s~d--~~I~vWd~~s~~ 109 (1100)
.|..+++. ...|.+|..+|.+.+|.... .+.+....-..++..|.-++...++++ ++.. +.+.+||++..+
T Consensus 107 ~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 107 SIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred cccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 34444443 45678889999999998752 233333334466888888776666665 6777 889999999886
Q ss_pred eeeeee----------cCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 110 LACCLK----------WESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 110 ~l~~~~----------~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
.+.+.. -+-.++.+.|-+. ...+++++.-+.|++|+....++.+.+ +.+. . .
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~--fd~~--E------------~ 248 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ--FDFL--E------------N 248 (412)
T ss_pred eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE--eccc--c------------C
Confidence 654431 1236788999988 889999999999999988765555443 2222 2 6
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-e-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-G-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
+++++..-| .++.+++|-..|.+..||++++++.-. + +. .+.|.++
T Consensus 249 ~is~~~l~p--~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~------------------------------tGsirsi 296 (412)
T KOG3881|consen 249 PISSTGLTP--SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI------------------------------TGSIRSI 296 (412)
T ss_pred cceeeeecC--CCcEEEEecccchhheecccCceeeccccCCc------------------------------cCCcceE
Confidence 799999967 688899999999999999999987543 2 22 6788888
Q ss_pred EEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
..+ |.+.++++++-|..||++|+.+.
T Consensus 297 h~h-p~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 297 HCH-PTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EEc-CCCceEEeeccceeEEEeecccc
Confidence 865 99999999999999999999874
No 254
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.79 E-value=0.00059 Score=86.68 Aligned_cols=70 Identities=26% Similarity=0.367 Sum_probs=54.7
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEE----EccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCce
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILW----DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lw----dl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V 252 (1100)
+.|.++.|-+ +...+++++.+|.|.+. |..+..+...-.- +..|
T Consensus 76 ~~ivs~~yl~--d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v------------------------------d~GI 123 (928)
T PF04762_consen 76 DKIVSFQYLA--DSESLCIALASGDIILVREDPDPDEDEIEIVGSV------------------------------DSGI 123 (928)
T ss_pred CcEEEEEecc--CCCcEEEEECCceEEEEEccCCCCCceeEEEEEE------------------------------cCcE
Confidence 7899999966 55559999999999988 5555544332211 7789
Q ss_pred EEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 253 SALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 253 ~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
.+++|. ||+..|+....+|.|.+-+.
T Consensus 124 ~a~~WS-PD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 124 LAASWS-PDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred EEEEEC-CCcCEEEEEeCCCEEEEEec
Confidence 999995 99999999999999887653
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=8.1e-07 Score=104.90 Aligned_cols=176 Identities=12% Similarity=0.088 Sum_probs=118.7
Q ss_pred eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEE
Q 001321 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1100)
Q Consensus 58 ~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~ 134 (1100)
+|.++|.++.....+..+..++....|+|||.+|+.++.+ ..|.+||+.+++.......++...+.+|+|++++++.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 6777888777666666778899999999999999877643 2589999998876444444555678899999998765
Q ss_pred -EeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CC--EEEEEEccCC
Q 001321 135 -GDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NA--LVILWDVSEA 210 (1100)
Q Consensus 135 -G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg--~V~lwdl~~~ 210 (1100)
.+.+|...||.++..++...+ +..+. ..+....|+| +|++++..+. ++ .|.++|+.++
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~~----lt~~~------------~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALTR----ITRHR------------AIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeEE----CccCC------------CCccceEECC--CCCEEEEEECCCCCceEEEEECCCC
Confidence 567887777877776666553 33222 3456678987 6777766654 33 5666677777
Q ss_pred EEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc-CCc--EEEEecCCC
Q 001321 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DGD--ILLWNTSTT 282 (1100)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~-DG~--I~lWd~~~~ 282 (1100)
+....... .....+.+| +|||++|+..+. ++. |.++|+.++
T Consensus 341 ~~~~Lt~~------------------------------g~~~~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 341 KVSRLTFE------------------------------GEQNLGGSI-TPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CEEEEecC------------------------------CCCCcCeeE-CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 65443211 111234577 499998877655 343 455666544
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.74 E-value=3.3e-07 Score=96.28 Aligned_cols=204 Identities=17% Similarity=0.259 Sum_probs=159.9
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--Cce---EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD--GIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~--~~~---~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
..++-.|.++++++|.+..+.|.+|-..|.+.-|... ... ...-..|..+|..+-|+-.-.++++.+.|..+.--
T Consensus 62 sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~h 141 (404)
T KOG1409|consen 62 SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWH 141 (404)
T ss_pred hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEE
Confidence 3445579999999999999999999999999999762 211 22446799999999999888889999988777655
Q ss_pred EcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 104 SLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 104 d~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
-.+++..+..+.....-+++.++-. +.++|...|.|.+..+....-.+. +++.+|. +.++++.
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i---~~~~~h~------------~~~~~l~ 204 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLI---TTFNGHT------------GEVTCLK 204 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceE---EEEcCcc------------cceEEEE
Confidence 5677777766655555555555544 888999999998888886554444 5677777 8999999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCE--EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
|.|. ..+++++++|-.|.+||+-.++ ....++| .+.|+.+++. +-
T Consensus 205 Wd~~--~~~LfSg~~d~~vi~wdigg~~g~~~el~gh------------------------------~~kV~~l~~~-~~ 251 (404)
T KOG1409|consen 205 WDPG--QRLLFSGASDHSVIMWDIGGRKGTAYELQGH------------------------------NDKVQALSYA-QH 251 (404)
T ss_pred EcCC--CcEEEeccccCceEEEeccCCcceeeeeccc------------------------------hhhhhhhhhh-hh
Confidence 9774 4569999999999999987764 3455666 7778888876 66
Q ss_pred CCEEEEEEcCCcEEEEecCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
-..+.++..||-|.+|+.+..
T Consensus 252 t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred heeeeeccCCCeEEEEeccce
Confidence 788999999999999998643
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.73 E-value=3.8e-06 Score=100.40 Aligned_cols=148 Identities=11% Similarity=0.212 Sum_probs=116.9
Q ss_pred EEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeE-----EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee
Q 001321 82 LEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNIT-----AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL 156 (1100)
Q Consensus 82 l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt-----~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~ 156 (1100)
-.+.....+++.++.++.+-+||...+..+....++...+ -+-.++..-++++|+.-+.|.+|+...+...
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p---- 168 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP---- 168 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc----
Confidence 4444555789999999999999999988887776664322 2233455668999999999999998732222
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE--EEecCCcccccccccCCCCCC
Q 001321 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII--FVGGGKDLQLKDGVVDSPSEG 234 (1100)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~--~~~~~~~~~~~~~l~~~~~g~ 234 (1100)
..+.+|. +.|.++.| +.+|.++++.+.|.++|+|++++.+.. ..++|
T Consensus 169 -~~l~GHe------------G~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH---------------- 217 (967)
T KOG0974|consen 169 -IRLKGHE------------GSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH---------------- 217 (967)
T ss_pred -ceecccC------------CceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccc----------------
Confidence 2366776 99999999 558999999999999999999998764 46777
Q ss_pred CCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 235 ~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
..+|..+|++ |+ .++|++.|-+.++|+...
T Consensus 218 --------------saRvw~~~~~-~n--~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 218 --------------SARVWACCFL-PN--RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred --------------cceeEEEEec-cc--eeEEeccceEEEEEeccc
Confidence 8889999986 77 899999999999997653
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.2e-05 Score=89.57 Aligned_cols=108 Identities=13% Similarity=0.247 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC-----------CcEEEEEc
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND-----------NEIQVWSL 105 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d-----------~~I~vWd~ 105 (1100)
+-+-+.|||.|.+|++--.-| |.+|+...-..+....|.+ |..+.|||+..||++.+.. ..++|||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 346699999999999987655 8999998877777778876 9999999999999998742 46999999
Q ss_pred CCCceeeeeec--C--CCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 106 ESRSLACCLKW--E--SNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 106 ~s~~~l~~~~~--~--~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
.+|.+..++.. . ..-.-+.||.+++|+|.-..++ |.|+...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtp 334 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETP 334 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecC
Confidence 99998888744 1 2234678999999999877765 6776644
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.71 E-value=4.2e-05 Score=87.36 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=137.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEeCCCc--e--EEEeCC-CCCCEEEEEEEeCCCEEEEEE-CCCcEE
Q 001321 32 YGIPATASILAFDHIQRLLAIATL----DGRIKVIGGDGI--E--GLLISP-SQLPYKNLEFLQNQGFLISIT-NDNEIQ 101 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~----dG~I~vw~~~~~--~--~~~~~~-h~~~V~~l~fs~d~~~Lls~s-~d~~I~ 101 (1100)
......++-|+++|++++|.+..+ +|.|..|..+.. . .+.... ....-.+++++|++.+|+++. .++.|.
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 335667888999999999999988 479999987442 2 222222 344567899999999999998 489999
Q ss_pred EEEcCC-Cceeee---eec-----------CCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeee-ceeecccc
Q 001321 102 VWSLES-RSLACC---LKW-----------ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQL-PYNISADA 164 (1100)
Q Consensus 102 vWd~~s-~~~l~~---~~~-----------~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~-~~~i~~~~ 164 (1100)
++++.. +.+... ..+ .....++.++|+++++++.+. ...|.+++++...+.+... ...++.
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-- 190 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-- 190 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--
Confidence 999987 443322 211 246889999999999988764 4567777777665555431 112221
Q ss_pred cccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEcc--CCEEEEEecCCcccccccccCCCCCCCCccccC
Q 001321 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1100)
Q Consensus 165 ~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~ 241 (1100)
......+.|+| +++++++..+ ++.|.+|++. .+........ . ..+....+
T Consensus 191 -----------G~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~---------~---~~~~~~~~-- 243 (345)
T PF10282_consen 191 -----------GSGPRHLAFSP--DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI---------S---TLPEGFTG-- 243 (345)
T ss_dssp -----------TSSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE---------E---SCETTSCS--
T ss_pred -----------CCCCcEEEEcC--CcCEEEEecCCCCcEEEEeecccCCceeEEEEe---------e---eccccccc--
Confidence 15689999999 6887766665 5689999998 5544322111 0 00000101
Q ss_pred CCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEecC
Q 001321 242 ISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTS 280 (1100)
Q Consensus 242 ~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~~ 280 (1100)
......++. +|||++|+++. .+++|.++++.
T Consensus 244 -------~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 244 -------ENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -------SSSEEEEEE--TTSSEEEEEECTTTEEEEEEEC
T ss_pred -------cCCceeEEE-ecCCCEEEEEeccCCEEEEEEEe
Confidence 224556665 59999988765 56789999984
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.60 E-value=1.8e-06 Score=90.78 Aligned_cols=137 Identities=17% Similarity=0.134 Sum_probs=94.7
Q ss_pred ccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecC
Q 001321 488 ITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 488 ~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~ 567 (1100)
++...+...++.+|..|-.|-+||+....-. ..++.+|...|+++...+-.+.|.+++.||.|.+|+++.
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~----------~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGT----------AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcce----------eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 3355566679999999999999999866532 145789999999999999999999999999999999976
Q ss_pred CCCCcceeeeccC----------------------------------------CCceeeccCCCcce-------------
Q 001321 568 SLDAKNFLFVLET----------------------------------------KSEVHALPEGKISL------------- 594 (1100)
Q Consensus 568 ~~~~~~~~~~~~~----------------------------------------~~~~~~i~~~~~~~------------- 594 (1100)
...+...-...++ .+.......+.++.
T Consensus 272 ~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~ 351 (404)
T KOG1409|consen 272 KRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKD 351 (404)
T ss_pred eeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhc
Confidence 5322110000000 00001111111111
Q ss_pred ----eEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCC
Q 001321 595 ----CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 595 ----~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~ 634 (1100)
+++.+..-...|+++.+...-.+|++++.|..|.|||++.
T Consensus 352 ~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 352 EERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred CCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2333333456799999988888999999999999999983
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.60 E-value=0.0001 Score=80.79 Aligned_cols=150 Identities=14% Similarity=0.094 Sum_probs=117.4
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC-cEEEEEcCCCceeeeeecCCCeEEEE
Q 001321 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-EIQVWSLESRSLACCLKWESNITAFS 124 (1100)
Q Consensus 46 ~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~-~I~vWd~~s~~~l~~~~~~~~Vt~~~ 124 (1100)
+|.++|..+. |...|.+.... ..+..+|.+.|+..++..+..-++.+..|+ .|.|+|..+++.......-+.|.++.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~-~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~ 408 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDG-YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK 408 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCC-eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE
Confidence 5778888774 77777665332 234567888899999988888888888888 79999999998877777779999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC----
Q 001321 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---- 200 (1100)
Q Consensus 125 ~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg---- 200 (1100)
+++++++++++..... +|-+|.+.++... +.. +..+-|+...||| ++..++-++.+|
T Consensus 409 vs~dGK~~vvaNdr~e--l~vididngnv~~----idk-----------S~~~lItdf~~~~--nsr~iAYafP~gy~tq 469 (668)
T COG4946 409 VSPDGKKVVVANDRFE--LWVIDIDNGNVRL----IDK-----------SEYGLITDFDWHP--NSRWIAYAFPEGYYTQ 469 (668)
T ss_pred EcCCCcEEEEEcCceE--EEEEEecCCCeeE----ecc-----------cccceeEEEEEcC--CceeEEEecCcceeee
Confidence 9999999999988885 4777777777663 221 1227899999999 677788887777
Q ss_pred EEEEEEccCCEEEEEe
Q 001321 201 LVILWDVSEAQIIFVG 216 (1100)
Q Consensus 201 ~V~lwdl~~~~~~~~~ 216 (1100)
.|+++|+.++++....
T Consensus 470 ~Iklydm~~~Kiy~vT 485 (668)
T COG4946 470 SIKLYDMDGGKIYDVT 485 (668)
T ss_pred eEEEEecCCCeEEEec
Confidence 7899999999886553
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=0.00017 Score=83.74 Aligned_cols=194 Identities=11% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEe
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVI 126 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s 126 (1100)
+..+.+++.+|.|+.||....+.+-...-...+..- ...++..++.++.++.|..||..+++++......+.+.+.-..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG-VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc-eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 678889999999999998655554332222222111 1224577888888999999999999998877665554432222
Q ss_pred cCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE--eccCCCCCEEEEEEcCCEEEE
Q 001321 127 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL--PHPNSSGNRVLIAYENALVIL 204 (1100)
Q Consensus 127 ~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~--f~P~~~g~~ll~~~~dg~V~l 204 (1100)
.+..+++++.+|.|..|+.. +++.. ++.+... +...+. -.|.-.+..++++..+|.+..
T Consensus 144 -~~~~v~v~~~~g~l~a~d~~--tG~~~---W~~~~~~-------------~~~~~~~~~sp~~~~~~v~~~~~~g~v~a 204 (377)
T TIGR03300 144 -ANGLVVVRTNDGRLTALDAA--TGERL---WTYSRVT-------------PALTLRGSASPVIADGGVLVGFAGGKLVA 204 (377)
T ss_pred -ECCEEEEECCCCeEEEEEcC--CCcee---eEEccCC-------------CceeecCCCCCEEECCEEEEECCCCEEEE
Confidence 35678888889977666544 45554 2232111 000000 011111235788888999999
Q ss_pred EEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceE-EEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 205 WDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS-ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 205 wdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~-sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+|..+++.+..... ..+.+... +. +...+. +.. . .+..+++++.+|.+..||..++
T Consensus 205 ld~~tG~~~W~~~~-------------~~~~g~~~--~~----~~~~~~~~p~-~--~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 205 LDLQTGQPLWEQRV-------------ALPKGRTE--LE----RLVDVDGDPV-V--DGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EEccCCCEeeeecc-------------ccCCCCCc--hh----hhhccCCccE-E--ECCEEEEEEcCCEEEEEECCCC
Confidence 99999876543211 00000000 00 000010 111 1 2457888888999999998766
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.56 E-value=8.1e-07 Score=93.24 Aligned_cols=222 Identities=17% Similarity=0.225 Sum_probs=141.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce---EE---EeCCCC------------CCEEEEEEEeCCC--EEEEE
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GL---LISPSQ------------LPYKNLEFLQNQG--FLISI 94 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~---~~---~~~~h~------------~~V~~l~fs~d~~--~Lls~ 94 (1100)
..-|+++.|+..|.+||+|..+|+|.+|...... .. ....|. ..|..++|.++++ ..+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3468999999999999999999999999874332 11 222232 3688899988654 45566
Q ss_pred ECCCcEEEEEcCCCcee-------------------------------------eeeecCCCeEEEEEecCCCEEEEEeC
Q 001321 95 TNDNEIQVWSLESRSLA-------------------------------------CCLKWESNITAFSVISGSHFMYIGDE 137 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~~l-------------------------------------~~~~~~~~Vt~~~~s~~~~~l~~G~~ 137 (1100)
+.|.+|++|-+..+... ....|+..|.+++++.+...+++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 67999999988543211 01134457899999999998887765
Q ss_pred CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec
Q 001321 138 NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1100)
Q Consensus 138 dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~ 217 (1100)
- .|-+|+++..++.+.- ..+..+...+.. .-|++-.|||... +.++-+++.|+|++-|++...+-- .
T Consensus 185 L-RINLWnlei~d~sFnI--VDIKP~nmEeLt-------eVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd--~ 251 (433)
T KOG1354|consen 185 L-RINLWNLEIIDQSFNI--VDIKPANMEELT-------EVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCD--A 251 (433)
T ss_pred e-eeeeccccccCCceeE--EEccccCHHHHH-------HHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhc--c
Confidence 4 4889999876655442 223333222211 4588999999744 458889999999999998653210 0
Q ss_pred CCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 218 GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 218 ~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|+.+. +.+.. +....-..+. -..|..+-| +.+|++|++-. --+|.+||+...
T Consensus 252 hsKlf---Eeped-p~~rsffsei-------IsSISDvKF-s~sGryilsRD-yltvk~wD~nme 303 (433)
T KOG1354|consen 252 HSKLF---EEPED-PSSRSFFSEI-------ISSISDVKF-SHSGRYILSRD-YLTVKLWDLNME 303 (433)
T ss_pred hhhhh---ccccC-CcchhhHHHH-------hhhhhceEE-ccCCcEEEEec-cceeEEEecccc
Confidence 10000 00000 0111111111 345666776 49999888753 368999999644
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=0.00052 Score=76.81 Aligned_cols=121 Identities=9% Similarity=0.039 Sum_probs=77.1
Q ss_pred CCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeee-ecCCCCCeeEEEEeeCCCeEEEEec----------CceEEE
Q 001321 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIE-VAGSRAPVSTLSFCFINSSLAVGNE----------FGLVYI 562 (1100)
Q Consensus 494 ~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~-l~~h~~~Vt~lafspd~~~Lasg~~----------dG~V~l 562 (1100)
+++.+....+ |+|.+-|++.........+...-.... -.-..+.++-++++++++.|.++.. .+.|.+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 5666665555 999999977654332222211000000 0012345556999999999888532 246777
Q ss_pred EEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC-EEEEEe-CCceEEEEecCCceEEEE
Q 001321 563 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGF-ECGRVAVLDMNLLSVLFF 640 (1100)
Q Consensus 563 w~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~-~LavGs-~dG~V~vwD~~~~~~~~~ 640 (1100)
+|..+.. +.....-...+..+++|||++ +|.+.. .++.|.|+|..+.+.+-.
T Consensus 284 iD~~t~k--------------------------vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 284 VDAKTGK--------------------------RLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EECCCCe--------------------------EEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 7776641 122223355889999999999 887776 578899999999988844
Q ss_pred e
Q 001321 641 T 641 (1100)
Q Consensus 641 ~ 641 (1100)
.
T Consensus 338 i 338 (352)
T TIGR02658 338 V 338 (352)
T ss_pred e
Confidence 3
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.52 E-value=0.00014 Score=84.58 Aligned_cols=146 Identities=14% Similarity=0.235 Sum_probs=89.8
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
+.+++.++.++.|..+|..+++.+........+.+ ....++..+++++.+|.+.. ++..++++.- +....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~l~a--ld~~tG~~~W---~~~~~---- 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGEVIA--LDAEDGKELW---RAKLS---- 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCEEEE--EECCCCcEee---eeccC----
Confidence 46788888899999999999999887765554332 12235788999999997655 4454566652 22210
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
+.+. -.|.-.+.+++++..+|.|..||..+++.+-.+........ .
T Consensus 135 ---------~~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~------------~---------- 180 (377)
T TIGR03300 135 ---------SEVL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALT------------L---------- 180 (377)
T ss_pred ---------ceee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCcee------------e----------
Confidence 1111 11221234588888999999999999987654422000000 0
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
... .+... .+ ..++.+..+|.+..+|..++
T Consensus 181 -~~~-~sp~~--~~-~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 181 -RGS-ASPVI--AD-GGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred -cCC-CCCEE--EC-CEEEEECCCCEEEEEEccCC
Confidence 000 01111 12 36778888899999998776
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.51 E-value=4.3e-05 Score=85.35 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=131.8
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEeCCCceEEEeCCCCC--------CEEEEEEEeCCCEEEEEE-C-CCcEEE
Q 001321 43 FDHIQRLLAIATL----------DGRIKVIGGDGIEGLLISPSQL--------PYKNLEFLQNQGFLISIT-N-DNEIQV 102 (1100)
Q Consensus 43 ~sp~~~lLA~gs~----------dG~I~vw~~~~~~~~~~~~h~~--------~V~~l~fs~d~~~Lls~s-~-d~~I~v 102 (1100)
++|+++.|.++.. +..|.|||....+.+...+... .-..++++|||++|+... + ++.|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999988876 6999999998877774444322 234889999999998776 4 789999
Q ss_pred EEcCCCceeeeeecCCCeEEE--------------------------------EE--------------ec-CCCEEEEE
Q 001321 103 WSLESRSLACCLKWESNITAF--------------------------------SV--------------IS-GSHFMYIG 135 (1100)
Q Consensus 103 Wd~~s~~~l~~~~~~~~Vt~~--------------------------------~~--------------s~-~~~~l~~G 135 (1100)
.|+.+++.+..+.-++...-+ .+ .+ ++.++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 999999887655333211111 11 12 55666666
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE----------cCCEEEEE
Q 001321 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY----------ENALVILW 205 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~----------~dg~V~lw 205 (1100)
.+ |+|++.++..+.-.... ++.+.... + .....+++.+.-+++|| +++++++.. ....|.++
T Consensus 213 ~e-G~V~~id~~~~~~~~~~-~~~~~~~~--~--~~~~wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLP-AIEAFTEA--E--KADGWRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred cC-CeEEEEecCCCcceecc-eeeecccc--c--cccccCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCEEEEE
Confidence 66 66666664332111111 11111000 0 00011234555699987 677788743 22478999
Q ss_pred EccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEE-cCCcEEEEecCCCC
Q 001321 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTTA 283 (1100)
Q Consensus 206 dl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~-~DG~I~lWd~~~~~ 283 (1100)
|..+++.+....- ...+..+++ +|||+ +|++.. .++.|.+.|..+++
T Consensus 285 D~~t~kvi~~i~v------------------------------G~~~~~iav-S~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 285 DAKTGKRLRKIEL------------------------------GHEIDSINV-SQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ECCCCeEEEEEeC------------------------------CCceeeEEE-CCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999988765432 456778886 59999 888776 68899999998874
Q ss_pred CC
Q 001321 284 ST 285 (1100)
Q Consensus 284 ~~ 285 (1100)
..
T Consensus 334 ~i 335 (352)
T TIGR02658 334 EL 335 (352)
T ss_pred EE
Confidence 33
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.50 E-value=0.00025 Score=91.84 Aligned_cols=231 Identities=12% Similarity=0.093 Sum_probs=124.3
Q ss_pred eeeeecCCCCCeEEEEEcCCCCEEEEEECCC-----------eEEEEeCCC----ceEE--E---------eCCCCCCEE
Q 001321 27 RIAVHYGIPATASILAFDHIQRLLAIATLDG-----------RIKVIGGDG----IEGL--L---------ISPSQLPYK 80 (1100)
Q Consensus 27 ~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG-----------~I~vw~~~~----~~~~--~---------~~~h~~~V~ 80 (1100)
.....||+.+-++.+-++++|++++.-.... .+.-|...+ .... + ..+-..| .
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~P-~ 571 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQYYGEKKLLDSTPLPLSLEKDNDPRLLTSPLKFP-G 571 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHHhhccccccccCCCcccccccCCcccccccCCCC-c
Confidence 3445789999999999999999886533211 011111100 0000 0 0111122 4
Q ss_pred EEEEEeCCCEEEEE-ECCCcEEEEEcCCCceeeeeecC---------------CCeEEEEEecCCCEEEEEeCC-CcEEE
Q 001321 81 NLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLKWE---------------SNITAFSVISGSHFMYIGDEN-GLMSV 143 (1100)
Q Consensus 81 ~l~fs~d~~~Lls~-s~d~~I~vWd~~s~~~l~~~~~~---------------~~Vt~~~~s~~~~~l~~G~~d-G~V~I 143 (1100)
.+++.++++.|..+ +..+.|.+||..... +...... .....++++++++.|++++.. +.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 67888754544444 457779999987554 3333211 135789999999988888764 55655
Q ss_pred EEEecCCCeeeeeceeeccccccc-cc--CC-C-CCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecC
Q 001321 144 IKYDADEGKLFQLPYNISADALSE-KA--GF-P-LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~-~~--~~-~-~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~ 218 (1100)
+++. .+.+.. +.+..... .. +. . .........|+++|. ++..+++.+.++.|++||..++.+..+.+.
T Consensus 651 id~~--~~~V~t----lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 651 IDFV--NETVRT----LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred EecC--CCEEEE----EeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEEEecC
Confidence 5543 333332 11100000 00 00 0 000134578999874 455455666788999999988876544332
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE-EEEcCCcEEEEecCCC
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA-VGYIDGDILLWNTSTT 282 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~-sg~~DG~I~lWd~~~~ 282 (1100)
. ... ...+... ....-.....+++. |+|..|+ +-+.++.|++||+.++
T Consensus 724 G-~~~------------~~~g~~~--~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 724 G-YER------------NLNGSSG--TSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred C-ccc------------cCCCCcc--ccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCC
Confidence 0 000 0000000 00002345678875 9988554 5566789999998644
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.50 E-value=1.2e-06 Score=94.45 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=113.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce----EEEeCCCCCCEEEEEEEeCCCEEEEEEC---CCcEEEEEcCCCc
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRS 109 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~Lls~s~---d~~I~vWd~~s~~ 109 (1100)
.+....++|.+++||+++.+....+++..... ..-...-...-+++.|..+....+.+.. ...+.+|+...+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 44567889999999999999998888873322 2222222222344445444444544443 4457777777788
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
..-.+.|-..++.++++||.+++++++.|+.|+|-.|+. ... +... ..+|..-|..++..+ +
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~-----Iesf--------clGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFV-----IESF--------CLGHKEFVSTISLTD--N 205 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc---ccc-----hhhh--------ccccHhheeeeeecc--C
Confidence 888889999999999999999999999999999988874 222 2211 112226688888854 3
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
. .|++++.|++|++||+.+++.+..+
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCccccc
Confidence 3 3899999999999999999876433
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=5.7e-05 Score=81.06 Aligned_cols=225 Identities=15% Similarity=0.214 Sum_probs=150.0
Q ss_pred CCCccccccc-----eeeeecCCCCCe-EEEEEcCCCCEEEEEECC-CeEEEEeCCC-c---eEEEeCCCCCC-------
Q 001321 17 GSLTAADLNL-----RIAVHYGIPATA-SILAFDHIQRLLAIATLD-GRIKVIGGDG-I---EGLLISPSQLP------- 78 (1100)
Q Consensus 17 ~~l~~~~~~~-----~~~~~~G~~~~v-~~la~sp~~~lLA~gs~d-G~I~vw~~~~-~---~~~~~~~h~~~------- 78 (1100)
++..+-.+|. .+.++.-+++.. .-+++|+++++|+++... |.|.++.++. . .+.-...|.++
T Consensus 64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCcccc
Confidence 3344444554 456666666666 679999999999999875 8999998833 2 22233445544
Q ss_pred ---EEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeeee----ecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecC
Q 001321 79 ---YKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCL----KWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDAD 149 (1100)
Q Consensus 79 ---V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~~----~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~ 149 (1100)
+-...|.|++++|++++- ...|.++++..+++.... .....-..+.|+|++++.++-++ +++|-+|.|+..
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 888999999999999985 467999999988764332 34456899999999999998887 899999999987
Q ss_pred CCeeeeec--eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC--EEEEEEccCC-EEEEEecCCccccc
Q 001321 150 EGKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA--LVILWDVSEA-QIIFVGGGKDLQLK 224 (1100)
Q Consensus 150 ~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg--~V~lwdl~~~-~~~~~~~~~~~~~~ 224 (1100)
.+++..+. -.+|... ........|..+| +|. ++-++..| .|.+|.+... ..+.+.+...
T Consensus 224 ~g~~~~lQ~i~tlP~dF---------~g~~~~aaIhis~--dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~---- 287 (346)
T COG2706 224 VGKFEELQTIDTLPEDF---------TGTNWAAAIHISP--DGR-FLYASNRGHDSIAVFSVDPDGGKLELVGITP---- 287 (346)
T ss_pred CceEEEeeeeccCcccc---------CCCCceeEEEECC--CCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEEec----
Confidence 66665421 1222211 1124566677755 887 77777666 6777877654 2233322200
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC-cEEEEecC
Q 001321 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-DILLWNTS 280 (1100)
Q Consensus 225 ~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG-~I~lWd~~ 280 (1100)
. . ........+ ++.|++|+++..++ .|.++.+.
T Consensus 288 ---t---e----------------g~~PR~F~i-~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 288 ---T---E----------------GQFPRDFNI-NPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred ---c---C----------------CcCCcccee-CCCCCEEEEEccCCCcEEEEEEc
Confidence 0 0 111223444 48999999988765 47777765
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9.6e-06 Score=91.66 Aligned_cols=186 Identities=13% Similarity=0.167 Sum_probs=133.4
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEe----CCCCCCEEEEEEE--------------------eCCCEEEEEECCCc
Q 001321 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLI----SPSQLPYKNLEFL--------------------QNQGFLISITNDNE 99 (1100)
Q Consensus 44 sp~~~lLA~gs~dG~I~vw~~~~~~~~~~----~~h~~~V~~l~fs--------------------~d~~~Lls~s~d~~ 99 (1100)
+|-+.++|..+.||++|+|+....++... ..-.+..+++.|. .|...++-+...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 46678999999999999999854433322 1222333444432 12335666777899
Q ss_pred EEEEEcCCCceeeee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001321 100 IQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
|.++++..+++...+ .|.+.|.++.++.+...+++++.|+.|..|+... +..... .....
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--~~~~~~---~~~~~------------ 144 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--KVIIRI---WKEQK------------ 144 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--ceeeee---eccCC------------
Confidence 999999999998777 5889999999999999999999999998888764 233211 11111
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
..+.++...| +|..++++| +.|.+||+++.+++.+| || .+.|.++
T Consensus 145 ~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh------------------------------~s~v~t~ 190 (541)
T KOG4547|consen 145 PLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGH------------------------------GSPVRTL 190 (541)
T ss_pred CccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCC------------------------------CcceEEE
Confidence 5688899977 688677765 56789999999987765 45 7788888
Q ss_pred EEecCC-----CCEEEEEE-cCCcEEEEecCC
Q 001321 256 CWASSS-----GSILAVGY-IDGDILLWNTST 281 (1100)
Q Consensus 256 ~w~spd-----g~~l~sg~-~DG~I~lWd~~~ 281 (1100)
.|. .+ |.+++++. .+..|.+|-+..
T Consensus 191 ~f~-~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 191 SFT-TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEE-EeccccccceeeeccccccceeEEEEEc
Confidence 876 55 66766653 355578887654
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=2.3e-05 Score=88.69 Aligned_cols=129 Identities=14% Similarity=0.132 Sum_probs=110.1
Q ss_pred CCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCC
Q 001321 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDA 571 (1100)
Q Consensus 492 s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~ 571 (1100)
+.+..+++-|...|.|-+|++..+.+. +. ..-..|.+.|.++.++.+...|-+++.|+.|..|++...
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it--~~-------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--- 134 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEIT--AK-------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--- 134 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEE--EE-------EecCCCCCcceeeecccccCceEecCCceeEEEEecccc---
Confidence 345558999999999999999998865 11 234679999999999999999999999999999999875
Q ss_pred cceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCe
Q 001321 572 KNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1100)
Q Consensus 572 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V 651 (1100)
+.+..+...+..+.+++++|||..|++|+ +.|.+||+++.+++ ..+.||.++|
T Consensus 135 ----------------------~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv---~~ftgh~s~v 187 (541)
T KOG4547|consen 135 ----------------------VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVV---ITFTGHGSPV 187 (541)
T ss_pred ----------------------eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEE---EEecCCCcce
Confidence 23456677888899999999999999986 58999999999998 5667899999
Q ss_pred EEEEEeec
Q 001321 652 ISMTWTEF 659 (1100)
Q Consensus 652 ~sl~fs~~ 659 (1100)
.+++|...
T Consensus 188 ~t~~f~~~ 195 (541)
T KOG4547|consen 188 RTLSFTTL 195 (541)
T ss_pred EEEEEEEe
Confidence 99999954
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=0.00056 Score=73.63 Aligned_cols=215 Identities=14% Similarity=0.179 Sum_probs=138.0
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEeCCCc--eEEEe--CCC-CCCEEEEEEEeCCCEEEEEEC-CC
Q 001321 28 IAVHYGIPATASILAFDHIQRLLAIATLD---GRIKVIGGDGI--EGLLI--SPS-QLPYKNLEFLQNQGFLISITN-DN 98 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~--~~~~~--~~h-~~~V~~l~fs~d~~~Lls~s~-d~ 98 (1100)
........+.++=|+++|++++|.++-.+ |.|-.|..+.. .+.++ ..- ..+-..++++++|++|+++.- .|
T Consensus 32 ~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 32 LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 34445567789999999999999888655 78888877542 33222 211 224499999999999999874 68
Q ss_pred cEEEEEcCC-Ccee---eeeecCCC----------eEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeee-ceeecc
Q 001321 99 EIQVWSLES-RSLA---CCLKWESN----------ITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQL-PYNISA 162 (1100)
Q Consensus 99 ~I~vWd~~s-~~~l---~~~~~~~~----------Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~-~~~i~~ 162 (1100)
.|.|+-++. |.+. ....|.+. +.+..+.|++++|++.+- --.|.+++++ ++.+... ++.++
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~--dg~L~~~~~~~v~- 188 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD--DGKLTPADPAEVK- 188 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc--cCccccccccccC-
Confidence 899999965 4432 33355554 889999999999988764 2335566655 5666631 11121
Q ss_pred cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEccC--CEEEEEecCCcccccccccCCCCCCCCccc
Q 001321 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSE--AQIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1100)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~--~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g 239 (1100)
.......|.||| +++...+..+ +++|.+|.... ++...+..+. -+ |.+
T Consensus 189 ------------~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~------tl-------P~d-- 239 (346)
T COG2706 189 ------------PGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID------TL-------PED-- 239 (346)
T ss_pred ------------CCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec------cC-------ccc--
Confidence 115679999999 6776655554 78999999888 4443332220 01 000
Q ss_pred cCCCCCCCCCCceEEEEEecCCCCEEEEEEc-CCcEEEEecCC
Q 001321 240 EGISEHQPEEKEISALCWASSSGSILAVGYI-DGDILLWNTST 281 (1100)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~-DG~I~lWd~~~ 281 (1100)
+ ........+. .++||++|+++-. ..+|.++.+..
T Consensus 240 --F----~g~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 240 --F----TGTNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred --c----CCCCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcC
Confidence 0 0033333444 3699998887632 33677777653
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.43 E-value=3e-06 Score=91.46 Aligned_cols=160 Identities=12% Similarity=0.112 Sum_probs=119.2
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCc--eeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPV--FKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~--l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~ 567 (1100)
..++.+++++.+..+....+.++.... .... ....-...-+++.|..+.....++...|.++-++.-.
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~----------~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL----------DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceee----------eEeecccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 578889999998888776676655433 1111 1111123567788888888888888888887777654
Q ss_pred CCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC-C
Q 001321 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-G 646 (1100)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~-~ 646 (1100)
-.. .+....-+|-+-++.+++|||++++++++.|..|+|-.+...-++ ..+. |
T Consensus 139 ~~~-----------------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I---esfclG 192 (390)
T KOG3914|consen 139 ADS-----------------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI---ESFCLG 192 (390)
T ss_pred ccc-----------------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch---hhhccc
Confidence 210 022334589999999999999999999999999999999887776 3333 7
Q ss_pred CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCC
Q 001321 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1100)
Q Consensus 647 ~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~ 708 (1100)
|...|..++... ...|++|+.|++|++||..+|+.|..+
T Consensus 193 H~eFVS~isl~~-----------------------~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 193 HKEFVSTISLTD-----------------------NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cHhheeeeeecc-----------------------CceeeecCCCCcEEEEecccCCccccc
Confidence 999999998762 244999999999999999999988655
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=4.3e-05 Score=98.74 Aligned_cols=227 Identities=13% Similarity=0.094 Sum_probs=138.3
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCceEEEeCCC-----------------CCCEEEEEEEeC-CCEEEEEECC
Q 001321 37 TASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPS-----------------QLPYKNLEFLQN-QGFLISITND 97 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~~~~~~~h-----------------~~~V~~l~fs~d-~~~Lls~s~d 97 (1100)
.+..++++++++.|.++.. +++|++++..+..+..+.+- -..-..|+|+|+ +...++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 4678999999887777654 57899999866555433211 011257899994 4445666678
Q ss_pred CcEEEEEcCCCceeeeeec---------------CCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeec
Q 001321 98 NEIQVWSLESRSLACCLKW---------------ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNIS 161 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~---------------~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~ 161 (1100)
+.|.+||..++........ -...+.++++|++++|++.+. ++.|++|+++.....+........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 8999999988765321110 023567999999998877765 688888887642211110000000
Q ss_pred ccccccccCC-----CCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCC
Q 001321 162 ADALSEKAGF-----PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1100)
Q Consensus 162 ~~~~~~~~~~-----~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 236 (1100)
...+ ..++. .........++++.| +|+.+++-+.++.|++||..++.+....+... .|.
T Consensus 785 ~~~l-~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-----------~G~-- 848 (1057)
T PLN02919 785 SDNL-FKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-----------AGF-- 848 (1057)
T ss_pred Cccc-ccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEEECCCCeEEEEeccCC-----------cCC--
Confidence 0000 00000 001123456888866 68867777788899999999988776654300 000
Q ss_pred ccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
..|... ...-.....+++. ++|+.+++-+.++.|++||+.++.
T Consensus 849 ~dG~~~---~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 849 KDGKAL---KAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCccc---ccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCCCc
Confidence 011100 0113356678865 999988888899999999998764
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.39 E-value=1.3e-06 Score=108.61 Aligned_cols=190 Identities=9% Similarity=0.121 Sum_probs=141.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
.|.++.=+|...+-.+|+.||.|++|.-... -+.........|+.+.|+.+|+....+..||.+.+|.+..+-+..-.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~q 2289 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQ 2289 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccc
Confidence 4567777888889999999999999876322 22344444489999999999999999999999999999866666666
Q ss_pred ecCCCeEEEEEecCCCEEEEEe---CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 115 KWESNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~---~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
.|....+.+.|.. ..+++.+ .++.+.+||.-.....-. .-. .|++.++++++-| ...
T Consensus 2290 chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~----v~~------------~H~~gaT~l~~~P--~~q 2349 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL----VHT------------CHDGGATVLAYAP--KHQ 2349 (2439)
T ss_pred cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce----eee------------ecCCCceEEEEcC--cce
Confidence 7888888888876 4455543 478899998543211111 112 3348899999988 466
Q ss_pred EEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC
Q 001321 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D 271 (1100)
.+++|+.+|.|++||++..+++.++.. |. ...++++|...
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~--------------------------------------~~--~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA--------------------------------------LD--TREYFVTGSSE 2389 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh--------------------------------------hh--hhheeeccCcc
Confidence 799999999999999998776544321 22 45679999999
Q ss_pred CcEEEEecCCCCCCC
Q 001321 272 GDILLWNTSTTASTK 286 (1100)
Q Consensus 272 G~I~lWd~~~~~~~~ 286 (1100)
|.|++|++.......
T Consensus 2390 g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cceEEEEccccchhh
Confidence 999999998765444
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=8.5e-05 Score=86.55 Aligned_cols=158 Identities=8% Similarity=0.000 Sum_probs=105.9
Q ss_pred CeEEEEEcCCCCE-EEEEECC---CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-C--CcEEEEEcCCCc
Q 001321 37 TASILAFDHIQRL-LAIATLD---GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-D--NEIQVWSLESRS 109 (1100)
Q Consensus 37 ~v~~la~sp~~~l-LA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d--~~I~vWd~~s~~ 109 (1100)
......|+|+++. ++..+.+ ..|+++|+.+.+...+....+.+....|+|||.+|+-... + ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678999999984 7755443 5799999977766655556677788899999987765432 3 468888998887
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
........+....-.|+|+++.++..+ ..|.-.||.++.+.+...+. .... .. ...|+|
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl----t~~g------------~~--~~~~SP-- 328 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV----VFHG------------KN--NSSVST-- 328 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC----ccCC------------Cc--CceECC--
Confidence 555444444445668999998777665 45666777777766665432 1100 11 137877
Q ss_pred CCCEEEEEEcC---------CEEEEEEccCCEEEE
Q 001321 189 SGNRVLIAYEN---------ALVILWDVSEAQIIF 214 (1100)
Q Consensus 189 ~g~~ll~~~~d---------g~V~lwdl~~~~~~~ 214 (1100)
+|++++..... ..|.+.|+.++....
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 68777665543 256777887776543
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=8.2e-06 Score=95.09 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=136.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
...++|+|++ .+.+|.|+.+|.|++++.++.. .....|... ..+|.|++||+.||.|.|-.+-+.+..+.+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 4578888887 7899999999999999987765 333444333 557899999999999999999999999999
Q ss_pred ecCCCeEEEEEecC-----CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 115 KWESNITAFSVISG-----SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~-----~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.+..++.+++++|+ .+.+++|+..| +.+..- .... ++.+. ......++|.++.| .
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er-----~wlg--nk~~v--------~l~~~eG~I~~i~W----~ 169 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER-----NWLG--NKDSV--------VLSEGEGPIHSIKW----R 169 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCcce-EEEehh-----hhhc--Cccce--------eeecCccceEEEEe----c
Confidence 99999999999998 56889999988 433211 1110 00000 11233489999999 6
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
|++++-+...|+ ++||..+++.+.......... .. .-....++|- + ...|+.|-
T Consensus 170 g~lIAWand~Gv-~vyd~~~~~~l~~i~~p~~~~------------R~-----------e~fpphl~W~-~-~~~LVIGW 223 (846)
T KOG2066|consen 170 GNLIAWANDDGV-KVYDTPTRQRLTNIPPPSQSV------------RP-----------ELFPPHLHWQ-D-EDRLVIGW 223 (846)
T ss_pred CcEEEEecCCCc-EEEeccccceeeccCCCCCCC------------Cc-----------ccCCCceEec-C-CCeEEEec
Confidence 787888888887 999999988776543211000 00 2233458885 4 45677777
Q ss_pred cCCcEEEEecC
Q 001321 270 IDGDILLWNTS 280 (1100)
Q Consensus 270 ~DG~I~lWd~~ 280 (1100)
.| +|++..+.
T Consensus 224 ~d-~v~i~~I~ 233 (846)
T KOG2066|consen 224 GD-SVKICSIK 233 (846)
T ss_pred CC-eEEEEEEe
Confidence 66 58888776
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.33 E-value=1.6e-06 Score=108.03 Aligned_cols=150 Identities=15% Similarity=0.215 Sum_probs=119.0
Q ss_pred cccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCC
Q 001321 489 TKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGS 568 (1100)
Q Consensus 489 ~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~ 568 (1100)
+.-+|...+++||++||+||+|.-..+.-. +. ....+. ..|+.+.|+.+|+-+..+..||.+.+|..+..
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--~~-------~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--VC-------FRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCCCeE--EE-------eeccCc-chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence 356778889999999999999998877632 11 223344 78999999999999999999999999998854
Q ss_pred CCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEE---eCCceEEEEecCCceEEEEeecCC
Q 001321 569 LDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG---FECGRVAVLDMNLLSVLFFTDDIS 645 (1100)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavG---s~dG~V~vwD~~~~~~~~~~~~~~ 645 (1100)
++..++.|+...+...|-. ..++++ ++++++.+||..-+.-...++ .
T Consensus 2284 --------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~ 2333 (2439)
T KOG1064|consen 2284 --------------------------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T 2333 (2439)
T ss_pred --------------------------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e
Confidence 5677788999999999876 346654 467999999987655443334 4
Q ss_pred CCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 646 ~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
.|.+.++++++.+. .-+|++|+++|.|++||..
T Consensus 2334 ~H~~gaT~l~~~P~----------------------~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPK----------------------HQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred ecCCCceEEEEcCc----------------------ceEEEecCCcCcEEEeehH
Confidence 59999999999743 4679999999999999943
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.29 E-value=0.00027 Score=78.61 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=64.0
Q ss_pred CeEEEE-eCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEE
Q 001321 57 GRIKVI-GGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI 134 (1100)
Q Consensus 57 G~I~vw-~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~ 134 (1100)
..|-++ .....+.-...+ ..-|+..++|||.|.+|++....+ |.+|+...+..+..+.|+ .|.-+.|+|.++||.+
T Consensus 11 ~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~kYL~t 88 (561)
T COG5354 11 AVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHP-DVKYLDFSPNEKYLVT 88 (561)
T ss_pred ceEEEeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeeecC-CceecccCcccceeee
Confidence 344444 333333223333 556999999999999888877544 999999998866666555 4889999999999988
Q ss_pred EeCCCc---------------EEEEEEec
Q 001321 135 GDENGL---------------MSVIKYDA 148 (1100)
Q Consensus 135 G~~dG~---------------V~Iw~~d~ 148 (1100)
=...+. +.|||...
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~s 117 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIAS 117 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccC
Confidence 665443 77777664
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.28 E-value=6.7e-06 Score=85.13 Aligned_cols=219 Identities=15% Similarity=0.213 Sum_probs=141.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc---eEEEe---CCCC------------CCEEEEEEEeCCC--EEEEE
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLI---SPSQ------------LPYKNLEFLQNQG--FLISI 94 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~---~~~~~---~~h~------------~~V~~l~fs~d~~--~Lls~ 94 (1100)
...|+++.|+..|.+||+|...|+|.+|..... +..+. ..|. ..|..+.|..+++ .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 457999999999999999999999999988443 33222 2332 2577888877653 45666
Q ss_pred ECCCcEEEEEcCCCce-------------------------------------e-------eeeecCCCeEEEEEecCCC
Q 001321 95 TNDNEIQVWSLESRSL-------------------------------------A-------CCLKWESNITAFSVISGSH 130 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~~-------------------------------------l-------~~~~~~~~Vt~~~~s~~~~ 130 (1100)
+.|.+|++|-+..+.+ + ..-.|+..|.+++++.+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 6799999999865410 0 0012344678889988888
Q ss_pred EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC
Q 001321 131 FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 131 ~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
.+++++. =.|.+|+++.-++.+.- ..+..|...+.. .-|++-.|||. .-..+.-.++.|.|++-|++..
T Consensus 186 t~lSaDd-LrINLWnl~i~D~sFnI--VDiKP~nmeeLt-------eVItSaeFhp~-~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 186 TLLSADD-LRINLWNLEIIDGSFNI--VDIKPHNMEELT-------EVITSAEFHPE-MCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeccc-eeeeeccccccCCceEE--EeccCccHHHHH-------HHHhhcccCHh-HcceEEEecCCCcEEehhhhhh
Confidence 8777654 44889999887766653 334444332221 45888999996 3445777888999999999864
Q ss_pred EEE----EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 211 QII----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 211 ~~~----~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
.+- ..+.- .+ .|.....-..-...|..+-| +++|++|++-. --++.+||+....
T Consensus 255 alcdn~~klfe~-------~~----------D~v~~~ff~eivsSISD~kF-s~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 255 ALCDNSKKLFEL-------TI----------DGVDVDFFEEIVSSISDFKF-SDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred hhccCchhhhhh-------cc----------CcccchhHHHHhhhhcceEE-cCCCcEEEEec-cceEEEEeccccc
Confidence 321 11110 00 00000000000345666776 59999887754 4689999997653
No 281
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.28 E-value=0.00012 Score=76.28 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=74.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCC-------CCEEEEEEEeCC------CEEEEEECCCcEEEEEc
Q 001321 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ-------LPYKNLEFLQNQ------GFLISITNDNEIQVWSL 105 (1100)
Q Consensus 39 ~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~-------~~V~~l~fs~d~------~~Lls~s~d~~I~vWd~ 105 (1100)
.-++||||+.+||.+...|.|+|||+-+.+...+.+-. .+|..|.|.+.. -.|+...-+|.++=+-+
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 46999999999999999999999999887777655432 478888887642 25777777887776665
Q ss_pred CC-----Cceeeeee----cCCCeEEEEEecCCCEEEEEeC
Q 001321 106 ES-----RSLACCLK----WESNITAFSVISGSHFMYIGDE 137 (1100)
Q Consensus 106 ~s-----~~~l~~~~----~~~~Vt~~~~s~~~~~l~~G~~ 137 (1100)
.. .+..+++. .+..|+++.++|..++|++|+.
T Consensus 127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 32 23344442 3568999999999999888864
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00043 Score=80.68 Aligned_cols=139 Identities=9% Similarity=0.024 Sum_probs=90.9
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCE-EEEEEC---CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEE
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGF-LISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~-Lls~s~---d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l 132 (1100)
.+|.+=|.++.......... ++....|+|||++ ++..+. +..|.++|+.+++.......++...+..|+|+++.+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEE
Confidence 35666566655444333333 7889999999986 443343 346999999998776666677778889999999877
Q ss_pred EEE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-C--EEEEEEcc
Q 001321 133 YIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-A--LVILWDVS 208 (1100)
Q Consensus 133 ~~G-~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-g--~V~lwdl~ 208 (1100)
+.. +.+|.-.||.++...+...+ +.... .....-.|+| +|++|+..+.. + .|.++|+.
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~------------~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYP------------GIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcEEE----cccCC------------CccCccEECC--CCCEEEEEECCCCCceEEEEECC
Confidence 654 44665567777766665543 22111 1123346877 78777776643 3 67778888
Q ss_pred CCEEEE
Q 001321 209 EAQIIF 214 (1100)
Q Consensus 209 ~~~~~~ 214 (1100)
+++..+
T Consensus 310 ~g~~~r 315 (419)
T PRK04043 310 SGSVEQ 315 (419)
T ss_pred CCCeEe
Confidence 776643
No 283
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=7.8e-05 Score=87.47 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC----eEEEEeCCC---ceEE-EeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEE-
Q 001321 35 PATASILAFDHIQRLLAIATL-DG----RIKVIGGDG---IEGL-LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVW- 103 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~-dG----~I~vw~~~~---~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vW- 103 (1100)
++.....+|||||+.||..+. +| .+.+|+... .... +...+.+.....+|+|||.+|+.++. ++...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 344456899999999987664 23 344466543 2222 22223334567899999998887764 5655555
Q ss_pred -EcCC--CceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 104 -SLES--RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 104 -d~~s--~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
++.. +...........+....|+|++++++.... +|.-.||.++...++... +.... ..+
T Consensus 310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~------------~~~ 373 (428)
T PRK01029 310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSP------------ENK 373 (428)
T ss_pred EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCC------------CCc
Confidence 4432 222222233456788999999998876543 443345555555555543 22111 345
Q ss_pred EEEEeccCCCCCEEEEEEc---CCEEEEEEccCCEEEEEe
Q 001321 180 VGVLPHPNSSGNRVLIAYE---NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~---dg~V~lwdl~~~~~~~~~ 216 (1100)
....|+| +|+.|+.... ...|.+||+.+++...+.
T Consensus 374 ~~p~wSp--DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 374 ESPSWAI--DSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 6688977 6776765443 247788899888765544
No 284
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.22 E-value=0.00013 Score=77.23 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=60.4
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc----cCCCCCCCCCeEEEEeccCCCCC
Q 001321 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK----AGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~----~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
....|.++.|+..|.+||+|+.+|.|-++.-+.... ..|.+.+.....- +.-+..-...|..+.|.+...+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~----~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK----GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc----cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 345799999999999999999999775554332111 0233322110000 00011123678899998877778
Q ss_pred EEEEEEcCCEEEEEEccCCEE
Q 001321 192 RVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
.++....|.+|++|-+.....
T Consensus 100 ~FLlstNdktiKlWKi~er~~ 120 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGS 120 (433)
T ss_pred EEEEecCCcceeeeeeecccc
Confidence 889999999999998876543
No 285
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.21 E-value=0.01 Score=68.39 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=75.2
Q ss_pred EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceee
Q 001321 507 VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1100)
Q Consensus 507 IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1100)
-++|++....++...+ .--...+.|++.+++|+...|+.|..||.|++||....
T Consensus 238 ~ciYE~~r~klqrvsv--------tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~------------------ 291 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSV--------TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG------------------ 291 (545)
T ss_pred EEEEEeecCceeEEEE--------EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC------------------
Confidence 3567776665553322 12245578999999999999999999999999998775
Q ss_pred ccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEE
Q 001321 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFF 640 (1100)
Q Consensus 587 i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~ 640 (1100)
+..+....-.++.++|+|+|..+++|++.|.+.+||+.-..+.++
T Consensus 292 ---------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 292 ---------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred ---------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 222334455678999999999999999999999999876554433
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.21 E-value=4.7e-05 Score=77.76 Aligned_cols=152 Identities=10% Similarity=0.066 Sum_probs=110.5
Q ss_pred EEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeee
Q 001321 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFV 577 (1100)
Q Consensus 498 l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~ 577 (1100)
+..++.|.++++.+++.+..... +.-....+.++++++|++++++.++...|..|.+.....-..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~-----------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~---- 195 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA-----------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE---- 195 (344)
T ss_pred eeeccCCcceeEEEEecCcccce-----------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee----
Confidence 55678899999999987765411 111112378899999999999999999999999987643210
Q ss_pred ccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEe--ecCCCCCCCeEEEE
Q 001321 578 LETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT--DDISGSSSPIISMT 655 (1100)
Q Consensus 578 ~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~--~~~~~~~~~V~sl~ 655 (1100)
......-...-.+..||.....+|+++.||++.|||++.-...... .....|.+.|..+.
T Consensus 196 ------------------~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~ 257 (344)
T KOG4532|consen 196 ------------------NIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR 257 (344)
T ss_pred ------------------eeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE
Confidence 1111222334457889998889999999999999999986554222 12224899999999
Q ss_pred EeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCC
Q 001321 656 WTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1100)
Q Consensus 656 fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g 702 (1100)
|+.++.. .||+....=+.+.+.|..++
T Consensus 258 Fsl~g~l--------------------DLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 258 FSLYGLL--------------------DLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ecCCCcc--------------------eEEEEecCcceEEEEEcccC
Confidence 9987765 67888888889999995553
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.21 E-value=0.019 Score=63.71 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=95.3
Q ss_pred CCCCCeeEEEEeeCCCeEEEEecCc-eEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEc
Q 001321 534 GSRAPVSTLSFCFINSSLAVGNEFG-LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT 612 (1100)
Q Consensus 534 ~h~~~Vt~lafspd~~~Lasg~~dG-~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafS 612 (1100)
+|.+.|.-..+..++.-++.|..|| .+-||+..+. .+..+...-+.|.+++.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------------e~kr~e~~lg~I~av~vs 410 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------------EVKRIEKDLGNIEAVKVS 410 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------------eEEEeeCCccceEEEEEc
Confidence 5667788888888999999999999 8999999886 345567778999999999
Q ss_pred CCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEE----
Q 001321 613 SSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVL---- 688 (1100)
Q Consensus 613 p~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g---- 688 (1100)
++|++++++.....++++|+.++.+...... --+-|+...|++.+.. ++-+
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS---~~~lItdf~~~~nsr~----------------------iAYafP~g 465 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKS---EYGLITDFDWHPNSRW----------------------IAYAFPEG 465 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEeccc---ccceeEEEEEcCCcee----------------------EEEecCcc
Confidence 9999999999999999999999987632222 3456888888855443 3322
Q ss_pred ecceeEEEEeCCCCccccC
Q 001321 689 FKDAKISIVGGSSENMISS 707 (1100)
Q Consensus 689 t~dg~v~v~d~~~g~~l~~ 707 (1100)
--..+|.++|...|++...
T Consensus 466 y~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred eeeeeEEEEecCCCeEEEe
Confidence 2345688999888776543
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0001 Score=86.70 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=110.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCC-EEEEEEEeCCCEEEEEECCCc-----EEEEEcCCC------
Q 001321 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNE-----IQVWSLESR------ 108 (1100)
Q Consensus 41 la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~Lls~s~d~~-----I~vWd~~s~------ 108 (1100)
-.+++.+..+|.|+.+|.|-+.+.......-...+... |+.+....+..+|++++.|.. |+|||++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 34688899999999999999998877665555555555 777777777789999987654 899998654
Q ss_pred cee--eee-e-----cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 109 SLA--CCL-K-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 109 ~~l--~~~-~-----~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.++ +.+ . .+.++++++++.+-..+++|..+|.|..+.=|..+.+-....|..++ ..+|+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-------------~~pIT 175 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-------------KEPIT 175 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-------------CCCce
Confidence 122 122 1 14679999999999999999999998776644422222221122222 27899
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCE
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~ 211 (1100)
++++ ..+++.++.+.....|.+|.+....
T Consensus 176 gL~~--~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 176 GLAL--RSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred eeEE--ecCCceeEEEEecceeEEEEecCCC
Confidence 9999 5577765556666667899988544
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.12 E-value=5.1e-05 Score=78.63 Aligned_cols=155 Identities=12% Similarity=0.156 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCc---eEEEeCCCCCCEEEEEEEeCC-CEEEEEECCCcEEEEEcC-CCcee-
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLE-SRSLA- 111 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~---~~~~~~~h~~~V~~l~fs~d~-~~Lls~s~d~~I~vWd~~-s~~~l- 111 (1100)
..++.|++.+.-++++-.+|.+.+-+.... .+....+|..+.--..|+... ..+.+++.|+.+..||++ .++.+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 557889999999999999999995444222 223667899999999997644 467899999999999998 33333
Q ss_pred -eeeecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 112 -CCLKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 112 -~~~~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
....|...|.++.-+|. ..++++|+-|-.|++||.......+. ++. -.+.|+.+.+||...
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~------~~~-----------v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF------KAK-----------VGGGVWRIKHHPEIF 266 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc------cCc-----------cccceEEEEecchhh
Confidence 24467788999988865 56999999999999999764221111 111 127899999999866
Q ss_pred CCEEEEEEcCCEEEEEEccCC
Q 001321 190 GNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
+..++++-.+|. +|-+.+.+
T Consensus 267 ~~lL~~CMh~G~-ki~~~~~~ 286 (339)
T KOG0280|consen 267 HRLLAACMHNGA-KILDSSDK 286 (339)
T ss_pred hHHHHHHHhcCc-eEEEeccc
Confidence 653444445554 67776654
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.11 E-value=1e-05 Score=59.54 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=35.4
Q ss_pred eEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 595 ~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
++..+.+|.++|++|+|+|++.+|++|+.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6778899999999999999999999999999999998
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.09 E-value=3.8e-05 Score=78.15 Aligned_cols=213 Identities=14% Similarity=0.119 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEE-----EEEEeCCCEEEEE-----ECCCcEEEEEcCC
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKN-----LEFLQNQGFLISI-----TNDNEIQVWSLES 107 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~-----l~fs~d~~~Lls~-----s~d~~I~vWd~~s 107 (1100)
-.+-+.+--+..+++|..||.+-+++.+. .+...|+-++.. .+....+..+.+. ..-+..+.|+++-
T Consensus 92 ~p~~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 92 DPNDACTMTDNRVCIGYADGSLAVFSTDK---DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred CCcccccccCCceEecCCCceEEEEechH---HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc
Confidence 33444455577899999999999999866 222223222221 2222333334332 2334556666655
Q ss_pred Cceeee-eecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 108 RSLACC-LKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 108 ~~~l~~-~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
.+.+.. ......|++++.+|..+ .+++|+++|.|-+|+.+.. .+.. -.+..|. .++.-|-||
T Consensus 169 ~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~--S~l~ahk------------~~i~eV~FH 232 (319)
T KOG4714|consen 169 IKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPV--SLLKAHK------------AEIWEVHFH 232 (319)
T ss_pred cccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc--cchH--HHHHHhh------------hhhhheecc
Confidence 443322 22223499999999765 6778999999999998853 1110 1133333 789999999
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
|. ++..|+++++||.+.-||..+.-+- .++........+. ..+.+. .+......+....++--+.--|..|
T Consensus 233 pk-~p~~Lft~sedGslw~wdas~~~l~--i~~~~s~~s~WLs---gD~v~s---~i~i~~ll~~~~~SinsfDV~g~~l 303 (319)
T KOG4714|consen 233 PK-NPEHLFTCSEDGSLWHWDASTTFLS--ISNQASVISSWLS---GDPVKS---RIEITSLLPSRSLSINSFDVLGPCL 303 (319)
T ss_pred CC-CchheeEecCCCcEEEEcCCCceEE--ecCcccccccccc---CCcccc---eEeeeccccccceeeeeeeccCceE
Confidence 98 5556999999999988888764332 1111100000010 000000 0000111122233332122458899
Q ss_pred EEEEcCCcEEEEe
Q 001321 266 AVGYIDGDILLWN 278 (1100)
Q Consensus 266 ~sg~~DG~I~lWd 278 (1100)
++|++-+.|.+.+
T Consensus 304 Vcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 304 VCGTDAEAIYLTR 316 (319)
T ss_pred EeccccceEEEec
Confidence 9999999888875
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=0.00099 Score=74.82 Aligned_cols=112 Identities=7% Similarity=0.094 Sum_probs=79.1
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-----------CCcEEEEEE
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-----------NGLMSVIKY 146 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-----------dG~V~Iw~~ 146 (1100)
.=+.+.|||.|.||++.-..| |.+|--.+-..++.+.|++ |.-+.|||..+||++=+. ...+.|||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 568899999999999998555 8999988888888888876 788999999999987542 256889998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCe-EEEEeccCCCCCEEEEEEcCCEEEEEEccC
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPV-VGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V-~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
.+ |.+... |.+.... ..+ --..| +.++++++.-..++ |.||+..+
T Consensus 290 ~t--G~lkrs-F~~~~~~------------~~~WP~frW--S~DdKy~Arm~~~s-isIyEtps 335 (698)
T KOG2314|consen 290 AT--GLLKRS-FPVIKSP------------YLKWPIFRW--SHDDKYFARMTGNS-ISIYETPS 335 (698)
T ss_pred cc--cchhcc-eeccCCC------------ccccceEEe--ccCCceeEEeccce-EEEEecCc
Confidence 76 444432 3332111 122 22356 44788677666655 47887665
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.08 E-value=1.1e-05 Score=82.05 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=93.4
Q ss_pred CeeEEEEeeCC-CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcC-CC
Q 001321 538 PVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SG 615 (1100)
Q Consensus 538 ~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp-~g 615 (1100)
.|++++-+|.. ..+++|++||.+.+|+++...+ +...+..|+.+|..+-|+| ++
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~------------------------p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM------------------------PVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccc------------------------hHHHHHHhhhhhhheeccCCCc
Confidence 49999999964 5677889999999999988633 2345678999999999999 56
Q ss_pred CEEEEEeCCceEEEEecCCceEEEEeecCCC-----CCCCeEE-EEEeecccCccccCCCCCCCCCCCCCCCceEEEEEe
Q 001321 616 AKLAVGFECGRVAVLDMNLLSVLFFTDDISG-----SSSPIIS-MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1100)
Q Consensus 616 ~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~-----~~~~V~s-l~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt 689 (1100)
..|.++++||.++.||..+.-+-.. ..... ...+|.+ ++..+ -.|+++.++.+-+--+..|+||+
T Consensus 237 ~~Lft~sedGslw~wdas~~~l~i~-~~~s~~s~WLsgD~v~s~i~i~~--------ll~~~~~SinsfDV~g~~lVcgt 307 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDASTTFLSIS-NQASVISSWLSGDPVKSRIEITS--------LLPSRSLSINSFDVLGPCLVCGT 307 (319)
T ss_pred hheeEecCCCcEEEEcCCCceEEec-CccccccccccCCcccceEeeec--------cccccceeeeeeeccCceEEecc
Confidence 7899999999999999986332211 11112 2344554 44442 22455666666666688999999
Q ss_pred cceeEEEEe
Q 001321 690 KDAKISIVG 698 (1100)
Q Consensus 690 ~dg~v~v~d 698 (1100)
+-+-|++++
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 999999987
No 294
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.0003 Score=79.29 Aligned_cols=195 Identities=13% Similarity=0.221 Sum_probs=125.6
Q ss_pred CCCCeEEEEEcCCC--CEEEEEE-----CCCeEEEEeCCCceEE----EeCCCCCCEEEEEEEeCCC-EEEEE--ECC--
Q 001321 34 IPATASILAFDHIQ--RLLAIAT-----LDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQG-FLISI--TND-- 97 (1100)
Q Consensus 34 ~~~~v~~la~sp~~--~lLA~gs-----~dG~I~vw~~~~~~~~----~~~~h~~~V~~l~fs~d~~-~Lls~--s~d-- 97 (1100)
+...|+.+++||.. ..+|+=. .=+.+|||........ ...-....=..+.|.+-|. .|+-+ .-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 36688999999874 4566532 2279999988621111 1111122233455665443 22222 223
Q ss_pred -------CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEE--EeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 98 -------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYI--GDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 98 -------~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~--G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
.++.+.+++.......+.-.++|.++.|+|++.-+++ |..--.|.|++++ +.+. |.++.
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---~~~v---~df~e------ 311 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---GKPV---FDFPE------ 311 (566)
T ss_pred CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---CCEe---EeCCC------
Confidence 3688889886666666677899999999999976554 4456677787776 4454 44552
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEE-EEcC--CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCC
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLI-AYEN--ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~-~~~d--g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~ 245 (1100)
++=.++-|+| .|+.++. |+.+ |.|-+||+.+.+.+..+..
T Consensus 312 --------gpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--------------------------- 354 (566)
T KOG2315|consen 312 --------GPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--------------------------- 354 (566)
T ss_pred --------CCccceEECC--CCCEEEEeecCCCCCceEEEeccchhhcccccc---------------------------
Confidence 6678889988 5765554 4443 7999999998766544321
Q ss_pred CCCCCceEEEEEecCCCCEEEEEEc------CCcEEEEecCCC
Q 001321 246 QPEEKEISALCWASSSGSILAVGYI------DGDILLWNTSTT 282 (1100)
Q Consensus 246 ~~~~~~V~sl~w~spdg~~l~sg~~------DG~I~lWd~~~~ 282 (1100)
..-+-..|. |||.+++|+.. |+.++||+....
T Consensus 355 ----~~tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ----ANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ----CCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 112334585 99999999864 788999998543
No 295
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00012 Score=84.72 Aligned_cols=145 Identities=20% Similarity=0.285 Sum_probs=103.7
Q ss_pred ccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEE
Q 001321 483 PSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYI 562 (1100)
Q Consensus 483 ~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~l 562 (1100)
+..+...++....++++.|+.-|.+++|+-..+.++. ....+..+.+..+..+++..+.|.|+..|.|.+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----------~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----------LKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhc----------ccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 3334445677888899999999999999988777541 112233456777888999999999999999999
Q ss_pred EEecCCCCCcceeeeccCCCceeeccCCCcceeEEEE-eecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCC-ceEEEE
Q 001321 563 YNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF-SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL-LSVLFF 640 (1100)
Q Consensus 563 w~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~-~~~~~~ 640 (1100)
|.+.......... +... ..|+..||+|+|++++..|.+|...|.|....+.. ...++.
T Consensus 103 ~ql~~~~p~~~~~--------------------~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~ 162 (726)
T KOG3621|consen 103 FQLNKELPRDLDY--------------------VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSK 162 (726)
T ss_pred ehhhccCCCccee--------------------eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccc
Confidence 9998742211110 1111 23788999999999999999999999999988876 333323
Q ss_pred eecCCCCCCCeEEEEEe
Q 001321 641 TDDISGSSSPIISMTWT 657 (1100)
Q Consensus 641 ~~~~~~~~~~V~sl~fs 657 (1100)
.+....-.++|..|++.
T Consensus 163 ~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 163 SQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccCcceEEeecc
Confidence 33333456788888766
No 296
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00081 Score=78.66 Aligned_cols=73 Identities=18% Similarity=0.334 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE-EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
|-.+++++|+|..-+||+|-.-|.+.+|.....+. ....+|+.+|..+.||++|..|++++.-|.|..|.+.-
T Consensus 59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 44567899999999999999999999999966554 46678999999999999999999999999999998763
No 297
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.00 E-value=0.01 Score=69.28 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCCe---E-------EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNI---T-------AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~V---t-------~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~ 157 (1100)
+..++..+.++.|.-+|..+|+.+......... . .-..--.+..+++++.+|.+ +-+|..+|++.-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l--~ald~~tG~~~W~- 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQV--YALNAEDGEVAWQ- 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEE--EEEECCCCCCccc-
Confidence 456777778888999999999888776443210 0 00011135678899999976 4455555666521
Q ss_pred eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
+.+++ .+. -.|.-.+.+++++..+|.|.-+|..+++.+-.+
T Consensus 146 ~~~~~---------------~~~---ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 146 TKVAG---------------EAL---SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred ccCCC---------------cee---cCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 22221 111 111112335888888999999999999876554
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.4e-05 Score=88.42 Aligned_cols=210 Identities=14% Similarity=0.182 Sum_probs=139.8
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC--c------eEEEeCCCCCCEEEEEEEeCCCEEEEEECC
Q 001321 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG--I------EGLLISPSQLPYKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~--~------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d 97 (1100)
+++.+-.||..+|.+++--.+.+-.++++.|.+|++|.+.. . ....-..|+.+|..+.|..+-++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34556679999998876555566678899999999998721 1 233556899999999999997677665 7
Q ss_pred CcEEEEEcCCCceeeeeec---CCCeEEEEEec--CCCEEEEE-eCCCcEEEEEEecCCCeeeeeceeecccccccccCC
Q 001321 98 NEIQVWSLESRSLACCLKW---ESNITAFSVIS--GSHFMYIG-DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~---~~~Vt~~~~s~--~~~~l~~G-~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1100)
+-|.+||.--++++..+.+ ++.++.+-.-+ +...+..| +...+|+++|-..- ...- .+++-+..
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc--e~~~-E~kVcna~------- 873 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC--EWTC-ELKVCNAP------- 873 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc--ccee-eEEeccCC-------
Confidence 8899999988887764422 12233222223 34555555 56788888775542 2221 12221110
Q ss_pred CCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001321 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1100)
Q Consensus 172 ~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~ 251 (1100)
.....+.+++..| .|+.++.+-++|.+.+.|.++|+++...... +-.
T Consensus 874 --~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpm-----------------------------ecd 920 (1034)
T KOG4190|consen 874 --GPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPM-----------------------------ECD 920 (1034)
T ss_pred --CCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcc-----------------------------cch
Confidence 0115688888855 7888999999999999999999876433211 111
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEE-EecCCC
Q 001321 252 ISALCWASSSGSILAVGYIDGDILL-WNTSTT 282 (1100)
Q Consensus 252 V~sl~w~spdg~~l~sg~~DG~I~l-Wd~~~~ 282 (1100)
...++ .|....++....|.++.+ |...++
T Consensus 921 llqla--apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 921 LLQLA--APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred hhhhc--CchhHHHHhhcccceeEeeehhcCC
Confidence 11222 377778888888999998 977654
No 299
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.96 E-value=0.019 Score=59.02 Aligned_cols=106 Identities=9% Similarity=0.068 Sum_probs=72.7
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
.+++.++..+.+.--|..+|.+.........|-+-+.- -++++++|+.+|.+++.++.+ |..... |.+-..-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t--Gs~~w~-f~~~~~v---- 95 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT--GSQIWN-FVILETV---- 95 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecc--hhheee-eeehhhh----
Confidence 45666777888899999999988887777766665554 577899999999887777664 544432 3232111
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~ 214 (1100)
..-..+.| ++..+.+++.|+....-|..+...+.
T Consensus 96 --------k~~a~~d~----~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 96 --------KVRAQCDF----DGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred --------ccceEEcC----CCceEEEecCCCcEEEecccccceEE
Confidence 00011222 56679999999999999988876554
No 300
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.96 E-value=0.001 Score=69.35 Aligned_cols=192 Identities=13% Similarity=0.162 Sum_probs=122.7
Q ss_pred CEEEEEEC------------CCeEEEEeCCCceEE----EeCCCCCCEEEEEEEe---CCC-EEEEEECCCcEEEEEcCC
Q 001321 48 RLLAIATL------------DGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQ---NQG-FLISITNDNEIQVWSLES 107 (1100)
Q Consensus 48 ~lLA~gs~------------dG~I~vw~~~~~~~~----~~~~h~~~V~~l~fs~---d~~-~Lls~s~d~~I~vWd~~s 107 (1100)
++||+|+. -|.+.+|++...+.. +...-...+-.+.|.- +|. .|+-+...|.|.++....
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence 37777763 378888987443222 2222334566666653 333 466677789999987765
Q ss_pred Cceeeeee-cC------CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 108 RSLACCLK-WE------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 108 ~~~l~~~~-~~------~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
..-...+. .. ..-.++.|++.+.-++++..+|.+.+.+... ..+... .....|. -..+
T Consensus 105 ~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~v-q~wk~He------------~E~W 169 (339)
T KOG0280|consen 105 DESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKV-QTWKVHE------------FEAW 169 (339)
T ss_pred ceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeeeec-ccccccc------------eeee
Confidence 44333331 11 1246788889999999999999998544332 222210 1233333 5567
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
...|+-. +.+.+++|+.|+.+.-||++-.. ...+.+ .+.+ ...|+|+.-..|
T Consensus 170 ta~f~~~-~pnlvytGgDD~~l~~~D~R~p~-~~i~~n------~kvH--------------------~~GV~SI~ss~~ 221 (339)
T KOG0280|consen 170 TAKFSDK-EPNLVYTGGDDGSLSCWDIRIPK-TFIWHN------SKVH--------------------TSGVVSIYSSPP 221 (339)
T ss_pred eeecccC-CCceEEecCCCceEEEEEecCCc-ceeeec------ceee--------------------ecceEEEecCCC
Confidence 7777544 44679999999999999998332 112211 0222 667888775557
Q ss_pred CCCEEEEEEcCCcEEEEecCCC
Q 001321 261 SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+..|+||+.|-.|++||..+-
T Consensus 222 ~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 222 KPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred CCceEEEeccccceeeeehhcc
Confidence 7889999999999999998754
No 301
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=6.9e-06 Score=73.31 Aligned_cols=50 Identities=32% Similarity=0.676 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001321 1046 ASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1099 (1100)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1100)
.-....-.=+|..||||||..|.+||+.|+++|..|...|..|.+|| ||+
T Consensus 41 Vv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~----wWk 90 (116)
T KOG0860|consen 41 VVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM----WWK 90 (116)
T ss_pred HHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 34666777789999999999999999999999999999998887765 886
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.92 E-value=0.021 Score=66.76 Aligned_cols=172 Identities=11% Similarity=0.105 Sum_probs=100.4
Q ss_pred ccccceeeeecCCCCCeE------EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCC-----------CEE-EEE
Q 001321 22 ADLNLRIAVHYGIPATAS------ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL-----------PYK-NLE 83 (1100)
Q Consensus 22 ~~~~~~~~~~~G~~~~v~------~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~-----------~V~-~l~ 83 (1100)
..+.++...++-+.+.+. ..++ .+..+.+++.+|.+.-+|....+.+-...-.. .+. .+.
T Consensus 40 ~~~~~~~~W~~~~g~g~~~~~~~~sPvv--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 117 (394)
T PRK11138 40 NQFTPTTVWSTSVGDGVGDYYSRLHPAV--AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT 117 (394)
T ss_pred ccCCcceeeEEEcCCCCccceeeeccEE--ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE
Confidence 346676666665544432 1122 36678888888999999986555543221111 000 111
Q ss_pred EEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccc
Q 001321 84 FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1100)
Q Consensus 84 fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~ 163 (1100)
. ++..++.++.++.+..+|.++|+++......+.+.+--+- .+..++++..+|.| +-+|..+|+.. ++.+..
T Consensus 118 v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l--~ald~~tG~~~---W~~~~~ 189 (394)
T PRK11138 118 V--AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGML--QALNESDGAVK---WTVNLD 189 (394)
T ss_pred E--ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEE--EEEEccCCCEe---eeecCC
Confidence 1 3456777888999999999999998887666544332111 24678888888865 55666667765 333321
Q ss_pred ccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE
Q 001321 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF 214 (1100)
Q Consensus 164 ~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~ 214 (1100)
.. ... ... ..+|.-.+..++++..+|.+..+|..+++.+-
T Consensus 190 ~~--~~~-~~~--------~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 190 VP--SLT-LRG--------ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred CC--ccc-ccC--------CCCCEEECCEEEEEcCCCEEEEEEccCChhhh
Confidence 10 000 000 01121112348888899999999998887643
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.92 E-value=0.0013 Score=75.41 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=98.2
Q ss_pred eeeeecCCCeEEEEEecCC-CEEEEE----eCCCcE--EEEEEecCCCeeeeec-eeecccccccccCCCCCCCCCeEEE
Q 001321 111 ACCLKWESNITAFSVISGS-HFMYIG----DENGLM--SVIKYDADEGKLFQLP-YNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~-~~l~~G----~~dG~V--~Iw~~d~~~~~l~~~~-~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
+..+..+....++.|+-.. ..+.+. +.+|.+ .-..|+..++++.... .++| -...|.++
T Consensus 199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsip-------------L~s~v~~c 265 (545)
T PF11768_consen 199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIP-------------LPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEe-------------cCCcceEE
Confidence 3444555667778888643 334433 224433 2233444444443321 1122 12689999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
+++| +.++++.|+.||.|++||...+...... . .-.++.++|+ |+|
T Consensus 266 a~sp--~E~kLvlGC~DgSiiLyD~~~~~t~~~k-a------------------------------~~~P~~iaWH-p~g 311 (545)
T PF11768_consen 266 ARSP--SEDKLVLGCEDGSIILYDTTRGVTLLAK-A------------------------------EFIPTLIAWH-PDG 311 (545)
T ss_pred ecCc--ccceEEEEecCCeEEEEEcCCCeeeeee-e------------------------------cccceEEEEc-CCC
Confidence 9988 4667999999999999999877443221 1 3346778997 999
Q ss_pred CEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCC-cceEEEEecc
Q 001321 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERR-LPVIVLHWST 317 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~w~~ 317 (1100)
..+++|+..|.|.+||+.-.............|...+++...... ..+..++|..
T Consensus 312 ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~ 367 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAP 367 (545)
T ss_pred cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEecc
Confidence 999999999999999997654333333333444444555433322 3556777774
No 304
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.91 E-value=1.5e-05 Score=70.84 Aligned_cols=49 Identities=35% Similarity=0.483 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhh
Q 001321 1045 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1093 (1100)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1100)
+.-......=+++.||||||+.|++||++|+.+|+.|.+-|++|-++|.
T Consensus 14 ~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 14 EVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3446788888999999999999999999999999999999999998883
No 305
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.87 E-value=0.00081 Score=69.01 Aligned_cols=195 Identities=11% Similarity=-0.008 Sum_probs=122.2
Q ss_pred EEEEECCCeEEEEeCCCceEEEeCCCC-CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC--ceeeee--ecCCCeEEEE
Q 001321 50 LAIATLDGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCL--KWESNITAFS 124 (1100)
Q Consensus 50 LA~gs~dG~I~vw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~--~~l~~~--~~~~~Vt~~~ 124 (1100)
+..++.|.++++++.+.........-. ..+.++++++|+.++++++..+.|..+.+... .++... .....=.+.+
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 445566666666665433222211111 34889999999999999999999999998654 233322 3335567889
Q ss_pred EecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEE
Q 001321 125 VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVIL 204 (1100)
Q Consensus 125 ~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~l 204 (1100)
|+.....+|++.+||++.|||+....-.+....-.-|. +.+++..+.|+|-..-.+|++.-.-+.+.+
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~------------hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH------------HNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCC------------CCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 99999999999999999999988643222211011122 348999999988544455666666678889
Q ss_pred EEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 205 WDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 205 wdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
-|+++.+-.+.. ...+.+.+ .....|...+|. .++..+.+..++ .+.-|++.
T Consensus 279 ~D~R~~~~~q~I~i~~d~~~~----------------------~~tq~ifgt~f~-~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 279 VDTRNYVNHQVIVIPDDVERK----------------------HNTQHIFGTNFN-NENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred EEcccCceeeEEecCcccccc----------------------cccccccccccc-CCCcccccccch-hhheeecc
Confidence 999887543322 11010000 003447777765 666666665554 35556654
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.0006 Score=79.72 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 37 TASILAFDHIQRLLAIATL----DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~----dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
..+-..|+|...++|+++- .|.|.||--.+. .-.-..-...+++++|+|..-.|+.+=.-|.+.||...+.+..+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfadtGE-Pqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFADTGE-PQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEecCCC-CCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 3455789999999999974 488999865443 11111122236779999997667777778999999999887765
Q ss_pred ee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 113 ~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
.. .|+.+|..+.|+++|..|.+++.-|.|..|.++.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 54 7889999999999999999999999999999995
No 307
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=5.5e-05 Score=79.96 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=110.1
Q ss_pred EecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccC
Q 001321 501 GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLET 580 (1100)
Q Consensus 501 g~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~ 580 (1100)
.+.+-.|-+=|+.++.-+ .+ .....|-++.|...+.++..|..+|.|..+|++....
T Consensus 230 ~G~sqqv~L~nvetg~~q------------sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq---------- 286 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQQ------------SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ---------- 286 (425)
T ss_pred ccccceeEEEEeeccccc------------cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----------
Confidence 334455666666666532 11 2446788999999999999999999999999987521
Q ss_pred CCceeeccCCCcceeEEEEeecCcCeEEEEEcC-CCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeec
Q 001321 581 KSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEF 659 (1100)
Q Consensus 581 ~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp-~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~ 659 (1100)
+.++ ...-..|.+.||+|..-. ++++|.+.+.+|.|.+||.+--+.--.+....||...-.-+.+.
T Consensus 287 ---------G~~~--~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~-- 353 (425)
T KOG2695|consen 287 ---------GNGW--CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH-- 353 (425)
T ss_pred ---------CCCc--ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccc--
Confidence 2222 233358999999999887 78889999999999999999766532223444564433333332
Q ss_pred ccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCC
Q 001321 660 KNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1100)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~ 708 (1100)
. ++++..++++++|...++|....|.++++.
T Consensus 354 -v-----------------~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 354 -V-----------------KEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred -c-----------------ccccceEEEccCeeEEEEEecccCceeecc
Confidence 2 234566888999999999999999988876
No 308
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00016 Score=83.62 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=106.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCC--CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc--
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP--SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-- 109 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~--h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-- 109 (1100)
++..+.--+++...++||.|+.-|.+++|+..+.+...... ..+.+.....+++..+++.++..+.|.|+-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 35556667788899999999999999999997766654443 44456666677776666667777888888776642
Q ss_pred ---eeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 110 ---LACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 110 ---~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
+++.. .|+..|||++|++++..+|+|+..|.|..-.++.. .. +..+.+ +.... +..|+-|.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~---~~---~~~~~q---~il~~----ds~IVQlD~ 178 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR---QA---FLSKSQ---EILSE----DSEIVQLDY 178 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh---hh---hccccc---eeecc----CcceEEeec
Confidence 22222 35678999999999999999999999988888751 11 112211 11111 166777766
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCE
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQ 211 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~ 211 (1100)
. ..+|+++.--.. .+++.+...
T Consensus 179 --~--q~~LLVStl~r~-~Lc~tE~et 200 (726)
T KOG3621|consen 179 --L--QSYLLVSTLTRC-ILCQTEAET 200 (726)
T ss_pred --c--cceehHhhhhhh-heeecchhH
Confidence 2 234565555554 356665554
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.80 E-value=0.011 Score=62.19 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=33.1
Q ss_pred cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEE
Q 001321 602 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 602 h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~ 638 (1100)
....|..|..||||.+||+-.-+|.|.+|++.+.++.
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 3667999999999999999999999999999876655
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0021 Score=69.74 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=63.8
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~ 256 (1100)
..|..++|+|...|- +..++.+..|.|.|+.+..++..+.. ...+.++|
T Consensus 194 ~~IrdlafSp~~~GL-l~~asl~nkiki~dlet~~~vssy~a------------------------------~~~~wSC~ 242 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGL-LGLASLGNKIKIMDLETSCVVSSYIA------------------------------YNQIWSCC 242 (463)
T ss_pred hhhhhhccCccccce-eeeeccCceEEEEecccceeeeheec------------------------------cCCceeee
Confidence 679999999976664 88899999999999999988766543 67899999
Q ss_pred EecCCCCEEEEEEcCCcEEEEecCCCCC
Q 001321 257 WASSSGSILAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 257 w~spdg~~l~sg~~DG~I~lWd~~~~~~ 284 (1100)
|.-.+..+|+.|-.+|.|.++|+...+.
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCc
Confidence 9855567789999999999999986643
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0016 Score=70.60 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=71.6
Q ss_pred EeCCCCCCEEEEEEEeCCC-EEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEec
Q 001321 71 LISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~ 148 (1100)
+...|...|..++|+|... .|..++.++.|.|.|+++...+..+.....+++++|+-+. .++|.|..+|.|.|+|+..
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 5556777899999999654 7888899999999999999999888777999999999765 6899999999999999886
Q ss_pred CCCeee
Q 001321 149 DEGKLF 154 (1100)
Q Consensus 149 ~~~~l~ 154 (1100)
.++.+.
T Consensus 268 ~~~~~~ 273 (463)
T KOG1645|consen 268 PEGPLM 273 (463)
T ss_pred CCchHh
Confidence 555444
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.74 E-value=0.027 Score=60.99 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=114.2
Q ss_pred CCCCCeEEEEEc-CCCCEEEEEECCCeEEEEeCCCceEE--EeC---C-CCCCEEEEEEEeCCCEEEEEECC--------
Q 001321 33 GIPATASILAFD-HIQRLLAIATLDGRIKVIGGDGIEGL--LIS---P-SQLPYKNLEFLQNQGFLISITND-------- 97 (1100)
Q Consensus 33 G~~~~v~~la~s-p~~~lLA~gs~dG~I~vw~~~~~~~~--~~~---~-h~~~V~~l~fs~d~~~Lls~s~d-------- 97 (1100)
-.+. ...++++ ++ ..|.++.. +.+.+++....++. ... . .......+++.++|.+.++-...
T Consensus 38 ~~~~-~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 38 DLPG-PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp ESSS-EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred ecCC-CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence 3344 7778888 56 45555555 44566687554333 222 1 33478899999998866666543
Q ss_pred CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeee-c-eeecccccccccCCCCC
Q 001321 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQL-P-YNISADALSEKAGFPLL 174 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~-~-~~i~~~~~~~~~~~~~~ 174 (1100)
+.|..++.. ++.......-.....++|+|+++.|++... .+.|..++++.....+... . +.++...
T Consensus 115 g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------- 183 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---------- 183 (246)
T ss_dssp EEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----------
T ss_pred cceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----------
Confidence 457777777 554444444456789999999999987664 5655444444444433321 0 1122111
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
+..-.+++ ..+|+..++.+..+.|.++|-+ ++++.... ++ ...+++
T Consensus 184 --g~pDG~~v--D~~G~l~va~~~~~~I~~~~p~-G~~~~~i~---------~p--------------------~~~~t~ 229 (246)
T PF08450_consen 184 --GYPDGLAV--DSDGNLWVADWGGGRIVVFDPD-GKLLREIE---------LP--------------------VPRPTN 229 (246)
T ss_dssp --CEEEEEEE--BTTS-EEEEEETTTEEEEEETT-SCEEEEEE----------S--------------------SSSEEE
T ss_pred --cCCCcceE--cCCCCEEEEEcCCCEEEEECCC-ccEEEEEc---------CC--------------------CCCEEE
Confidence 34778888 4489877777789999999988 65544332 11 357899
Q ss_pred EEEecCCCCEEEEEE
Q 001321 255 LCWASSSGSILAVGY 269 (1100)
Q Consensus 255 l~w~spdg~~l~sg~ 269 (1100)
+||-.++.+.|+..+
T Consensus 230 ~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 230 CAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEESTTSSEEEEEE
T ss_pred EEEECCCCCEEEEEe
Confidence 998667777666543
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.73 E-value=0.0045 Score=66.58 Aligned_cols=192 Identities=18% Similarity=0.178 Sum_probs=113.8
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecC----CCe
Q 001321 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE----SNI 120 (1100)
Q Consensus 46 ~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~----~~V 120 (1100)
++..+.+++.++.|+.||....+.+-...-..++.... ..++..++.++.++.|..+|..+++++... ... .-.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 56777888999999999986555553333233322222 333466777778899999999999998874 322 112
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC-eEEEEeccCCCCCEEEEEEcC
Q 001321 121 TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP-VVGVLPHPNSSGNRVLIAYEN 199 (1100)
Q Consensus 121 t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~-V~sv~f~P~~~g~~ll~~~~d 199 (1100)
........++.++++..+|.| +.++..+|++.-. +.+......... ..... ...+.+ .++ .++++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l--~~~d~~tG~~~w~-~~~~~~~~~~~~----~~~~~~~~~~~~---~~~-~v~~~~~~ 182 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKL--VALDPKTGKLLWK-YPVGEPRGSSPI----SSFSDINGSPVI---SDG-RVYVSSGD 182 (238)
T ss_dssp --SEEEEETTEEEEEETCSEE--EEEETTTTEEEEE-EESSTT-SS--E----EEETTEEEEEEC---CTT-EEEEECCT
T ss_pred cccCceEecCEEEEEeccCcE--EEEecCCCcEEEE-eecCCCCCCcce----eeecccccceEE---ECC-EEEEEcCC
Confidence 333344448889999989966 4455556777632 222110000000 00011 123333 134 58888878
Q ss_pred CE-EEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001321 200 AL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1100)
Q Consensus 200 g~-V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd 278 (1100)
+. +.+ |+.+++.+.... ...+..+. ...+..|++++.+|.|..||
T Consensus 183 g~~~~~-d~~tg~~~w~~~-------------------------------~~~~~~~~--~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-------------------------------ISGIYSLP--SVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-------------------------------SS-ECECE--ECCCTEEEEEETTTEEEEEE
T ss_pred CeEEEE-ECCCCCEEEEec-------------------------------CCCccCCc--eeeCCEEEEEeCCCEEEEEE
Confidence 84 555 999998653211 11122212 26678888888999999999
Q ss_pred cCCCC
Q 001321 279 TSTTA 283 (1100)
Q Consensus 279 ~~~~~ 283 (1100)
+.+++
T Consensus 229 ~~tG~ 233 (238)
T PF13360_consen 229 LKTGK 233 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 99873
No 314
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.73 E-value=0.0043 Score=70.24 Aligned_cols=144 Identities=15% Similarity=0.240 Sum_probs=100.4
Q ss_pred CCEEEEEEC---------C-CeEEEEeCCCc-------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 47 QRLLAIATL---------D-GRIKVIGGDGI-------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 47 ~~lLA~gs~---------d-G~I~vw~~~~~-------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
..++++||. . |+|.+|..... +.+......++|.+++-.. ++|+ ++.++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~lv-~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GRLV-VAVGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TEEE-EEETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CEEE-EeecCEEEEEEccCcc
Confidence 689999985 2 99999999663 3334456788999998873 3444 3346999999999888
Q ss_pred -eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 110 -LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 -~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
+.....+...+...+....++++++|+....|.++.|+.+..++........ ...++++.|-+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~--------------~~~v~~~~~l~d- 183 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ--------------PRWVTAAEFLVD- 183 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS---------------BEEEEEEEE-S-
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC--------------CccEEEEEEecC-
Confidence 6666655555455555555779999999999999999975555654211111 145888888553
Q ss_pred CCCEEEEEEcCCEEEEEEccC
Q 001321 189 SGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
++.++++..+|.+.++....
T Consensus 184 -~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 184 -EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -SSEEEEEETTSEEEEEEE-S
T ss_pred -CcEEEEEcCCCeEEEEEECC
Confidence 34699999999999988763
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.72 E-value=0.048 Score=59.01 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=121.8
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEE-eCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 39 SILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFL-QNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 39 ~~la~sp-~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs-~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
-+.+|++ ++.++++-...+.|+.|+....+........ ...+++. ++ +.|+.+.. +.+.++|+.+++.......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEc-CceEEEecCCCcEEEEeec
Confidence 3578998 7888888778899999999777665433222 6666777 56 56666665 4456669999866544432
Q ss_pred ------CCCeEEEEEecCCCEEEEEeCCCc------EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 117 ------ESNITAFSVISGSHFMYIGDENGL------MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 117 ------~~~Vt~~~~s~~~~~l~~G~~dG~------V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
....+.+++++++++.++...... =.||.++.+ ++.... ... - .....|+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~-~------------~~pNGi~~ 141 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADG-L------------GFPNGIAF 141 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEE-E------------SSEEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecC-c------------ccccceEE
Confidence 245789999999995444433211 246888776 555432 111 1 55789999
Q ss_pred ccCCCCCEEEE-EEcCCEEEEEEccCC-E-EE--EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 185 HPNSSGNRVLI-AYENALVILWDVSEA-Q-II--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 185 ~P~~~g~~ll~-~~~dg~V~lwdl~~~-~-~~--~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
+| +++.|++ -+..+.|..|++... . +. ..+.+ +. ...+....++..
T Consensus 142 s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--------~~------------------~~~g~pDG~~vD- 192 (246)
T PF08450_consen 142 SP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID--------FP------------------GGPGYPDGLAVD- 192 (246)
T ss_dssp ET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE---------S------------------SSSCEEEEEEEB-
T ss_pred CC--cchheeecccccceeEEEeccccccceeeeeeEEE--------cC------------------CCCcCCCcceEc-
Confidence 88 6765654 455678888888642 1 21 11111 10 002346778865
Q ss_pred CCCCEEEEEEcCCcEEEEecC
Q 001321 260 SSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.+|...++....+.|.++|..
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT
T ss_pred CCCCEEEEEcCCCEEEEECCC
Confidence 899988888889999999976
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.00014 Score=76.87 Aligned_cols=166 Identities=13% Similarity=0.172 Sum_probs=111.6
Q ss_pred CCCCeEEEEEcCC--CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC---
Q 001321 34 IPATASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--- 108 (1100)
Q Consensus 34 ~~~~v~~la~sp~--~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~--- 108 (1100)
+|..-.| ||+-. +-..++|. +-.|-|-++.+....-.. .++.|-+++|...+..|..++..|.|.+.|++.+
T Consensus 211 i~~a~~C-awSlni~gyhfs~G~-sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG 287 (425)
T KOG2695|consen 211 IPKAWSC-AWSLNIMGYHFSVGL-SQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG 287 (425)
T ss_pred CCcchhh-hhhhccceeeecccc-cceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC
Confidence 3444444 55532 22233443 455666665332222112 5567999999998899999999999999999876
Q ss_pred --ceeeeeecCCCeEEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 109 --SLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 109 --~~l~~~~~~~~Vt~~~~s~-~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
-....+.|+..|||+..-. +.++|.+.+-+|.|++||......+... ....+|.- . .+..-+..+
T Consensus 288 ~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V--~qYeGHvN-~---------~a~l~~~v~ 355 (425)
T KOG2695|consen 288 NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV--MQYEGHVN-L---------SAYLPAHVK 355 (425)
T ss_pred CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccce--eeeecccc-c---------ccccccccc
Confidence 4567789999999999987 7889999999999999998865442221 12344420 0 111112223
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
|. +|. +++++.|...|||.++.+.+.+..
T Consensus 356 ~e-eg~-I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 356 EE-EGS-IFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cc-cce-EEEccCeeEEEEEecccCceeecc
Confidence 32 454 888999999999999999887654
No 317
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.70 E-value=0.27 Score=60.04 Aligned_cols=139 Identities=9% Similarity=0.109 Sum_probs=87.2
Q ss_pred CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee--ecCCCeEEEEEecCC-----
Q 001321 57 GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGS----- 129 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~----- 129 (1100)
..||+++-.+. ...-.-.+.++....+.|...++.++.++.+...++..+.+.... ..+..|.|+.++|-+
T Consensus 470 ~~iRl~ss~~~--~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 470 NSIRLVSSAGL--RSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred ccEEEEcchhh--hhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 45677666521 111223344566666666667888888888888888877643322 456889999999753
Q ss_pred -CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 130 -HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 130 -~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
+++++|..+..+.+..+..+...+.. ..++... .| ..|.-..+ -.+..+|+++..||.+.-|.+.
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~--~~l~~~~------iP----RSIl~~~~--e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITH--EQLSGEI------IP----RSILLTTF--EGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeee--eccCCCc------cc----hheeeEEe--eccceEEEEEcCCceEEEEEEE
Confidence 38999999998877777654333221 1122111 11 44555556 3346679999999988776665
Q ss_pred CCE
Q 001321 209 EAQ 211 (1100)
Q Consensus 209 ~~~ 211 (1100)
.+.
T Consensus 614 ~~t 616 (1096)
T KOG1897|consen 614 INT 616 (1096)
T ss_pred ccc
Confidence 543
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.68 E-value=9.3e-05 Score=54.31 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=32.4
Q ss_pred eecCCCCCeeEEEEeeCCCeEEEEecCceEEEEE
Q 001321 531 EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1100)
Q Consensus 531 ~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~ 564 (1100)
.+.+|..+|++|+|+|++.+|++|+.||.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4779999999999999999999999999999997
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.66 E-value=0.018 Score=71.13 Aligned_cols=214 Identities=15% Similarity=0.202 Sum_probs=126.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCC---ceEE----EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 35 PATASILAFDHIQRLLAIATLDG--RIKVIGGDG---IEGL----LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG--~I~vw~~~~---~~~~----~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
++..-++.++|.....|+++..+ .+..|-... +... ..-.....|.++.|..++..++.+...|.|.+-|.
T Consensus 18 ~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~ 97 (1265)
T KOG1920|consen 18 PGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDP 97 (1265)
T ss_pred CCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcc
Confidence 33455666666666666664332 222222211 1111 11123357999999999999999999999999998
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC---CCee----------eeece-----eeccccccc
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD---EGKL----------FQLPY-----NISADALSE 167 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~---~~~l----------~~~~~-----~i~~~~~~~ 167 (1100)
++...-..-.-...|.+++|+|+.++++..+..+++.+..++-+ ...+ ....| .+.+..-..
T Consensus 98 et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~ 177 (1265)
T KOG1920|consen 98 ETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQ 177 (1265)
T ss_pred cccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhh
Confidence 88766555556678999999999999999999998877765321 1111 00000 011100000
Q ss_pred ccCCCC---------CCCCCeEEEEeccCCCCCEEEEEEc----C-CEEEEEEccCCEEEEEecCCcccccccccCCCCC
Q 001321 168 KAGFPL---------LSHQPVVGVLPHPNSSGNRVLIAYE----N-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 168 ~~~~~~---------~~~~~V~sv~f~P~~~g~~ll~~~~----d-g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g 233 (1100)
..+.+. .-++.=++|.| +.+|.++++.+. + ..+++||-+ +.+...-.
T Consensus 178 ~~~~~~~~ek~~~~~~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se---------------- 238 (1265)
T KOG1920|consen 178 AARQKIEKEKALEQIEQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE---------------- 238 (1265)
T ss_pred cccccccccccccchhhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC----------------
Confidence 000000 01123356899 889997777432 2 588999976 32211100
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE---cCCcEEEEecCC
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY---IDGDILLWNTST 281 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~---~DG~I~lWd~~~ 281 (1100)
...+.=.++.|- |.|..+++-. +|++|.++..+.
T Consensus 239 -------------~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 239 -------------PVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred -------------cccccccceeec-CCCCeEeeeeecCCCCcEEEEecCC
Confidence 003344578997 9999988864 456799987654
No 320
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00018 Score=79.92 Aligned_cols=178 Identities=11% Similarity=0.094 Sum_probs=119.3
Q ss_pred CCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCce
Q 001321 480 GGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1100)
Q Consensus 480 GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~ 559 (1100)
.||...+..++.-.+.+-+++++.|.+|++|.+....- ...+...+.+...|..+|..+.|-.+.+++++ .||-
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----EIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----ccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 46666666555666777899999999999998763220 01112233556789999999999999998775 4788
Q ss_pred EEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcC--CCCEEEEE-eCCceEEEEecCCce
Q 001321 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS--SGAKLAVG-FECGRVAVLDMNLLS 636 (1100)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp--~g~~LavG-s~dG~V~vwD~~~~~ 636 (1100)
+.+||--..+.- .........+.++.+..-+ +...|..| +...+|+++|.+...
T Consensus 806 iHlWDPFigr~L-----------------------aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 806 IHLWDPFIGRLL-----------------------AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ceeecccccchh-----------------------HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 999996443110 0001112234444444434 33344444 788999999999876
Q ss_pred EEEEeecC--CCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCC
Q 001321 637 VLFFTDDI--SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1100)
Q Consensus 637 ~~~~~~~~--~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~ 708 (1100)
........ .+...-+.+++....|.. |+++-..|.|.+.|..+|+.|++.
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~----------------------lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNK----------------------LAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcch----------------------hhHHhcCCcEEEEecCCCceeccC
Confidence 65333332 234456778887755544 999999999999999999999875
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.52 E-value=0.017 Score=66.33 Aligned_cols=205 Identities=14% Similarity=0.155 Sum_probs=119.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCC-----C---------------------ceE------------------EEe
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-----G---------------------IEG------------------LLI 72 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~-----~---------------------~~~------------------~~~ 72 (1100)
.|+++.|.++..-||+|...|.|.||... + ..+ .+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999999999999999999998430 0 000 011
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec---------CCCeEEEEEec-----C---CCEEEEE
Q 001321 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW---------ESNITAFSVIS-----G---SHFMYIG 135 (1100)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~---------~~~Vt~~~~s~-----~---~~~l~~G 135 (1100)
....++|++++.| |-++++.+..+|.+.|.|++...++..... ...|+++.|.. + .-.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2246899999998 558999999999999999988887766421 23688888872 2 2489999
Q ss_pred eCCCcEEEEEEec-CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC-------------------CCEEEE
Q 001321 136 DENGLMSVIKYDA-DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS-------------------GNRVLI 195 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~-~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~-------------------g~~ll~ 195 (1100)
...|.+.++++.. ..+.......... ..+.++|..|..--.+. -.-+++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~-----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT-----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE-------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc-----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 9999999998764 3333332111111 01114444443210000 012566
Q ss_pred EEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe----cCCCCEEEEEEcC
Q 001321 196 AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA----SSSGSILAVGYID 271 (1100)
Q Consensus 196 ~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~----spdg~~l~sg~~D 271 (1100)
..++..++++...+.+.....-- . .-...++++. ...+..|++-..+
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~-~----------------------------~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFD-D----------------------------PFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-S-S-----------------------------EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred EEcccceEEEeCCCCcccceeec-c----------------------------ccccceEEEEeecccCCceEEEEEECC
Confidence 66677779998887665322111 0 1223334443 1356789999999
Q ss_pred CcEEEEecCCC
Q 001321 272 GDILLWNTSTT 282 (1100)
Q Consensus 272 G~I~lWd~~~~ 282 (1100)
|.++++.+..-
T Consensus 282 G~i~i~SLP~L 292 (395)
T PF08596_consen 282 GSIRIYSLPSL 292 (395)
T ss_dssp SEEEEEETTT-
T ss_pred CcEEEEECCCc
Confidence 99999999765
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.51 E-value=0.03 Score=60.67 Aligned_cols=220 Identities=17% Similarity=0.164 Sum_probs=125.1
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCC-eEEEEeCCCceEE-EeCCCCC--CEEEEEEEeCCCEEEEEEC-----CCcEEEE
Q 001321 34 IPATASILAFDH-IQRLLAIATLDG-RIKVIGGDGIEGL-LISPSQL--PYKNLEFLQNQGFLISITN-----DNEIQVW 103 (1100)
Q Consensus 34 ~~~~v~~la~sp-~~~lLA~gs~dG-~I~vw~~~~~~~~-~~~~h~~--~V~~l~fs~d~~~Lls~s~-----d~~I~vW 103 (1100)
+|.....++.+| ....+|.+-.-| ...+||....+.. .+....+ -.=+-.|++||.+|.+.=. .|.|.||
T Consensus 3 lP~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 3 LPARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CCccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 466777899999 667788887776 5677888655544 2222222 3446789999999998743 4679999
Q ss_pred EcC-CCceeeeeecC-CCeEEEEEecCCCEEEEEeC-------CCcEEEEEEecCCCeeeeeceeecccccccccCCC-C
Q 001321 104 SLE-SRSLACCLKWE-SNITAFSVISGSHFMYIGDE-------NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP-L 173 (1100)
Q Consensus 104 d~~-s~~~l~~~~~~-~~Vt~~~~s~~~~~l~~G~~-------dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~-~ 173 (1100)
|.. +-+.+..+... -.-.-+.+.|+++.|+++.. .|.. -.++++.+..+..+ .-..-.+.+...++ .
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~-kLNl~tM~psL~~l--d~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRA-KLNLDTMQPSLVYL--DARSGALLEQVELPPD 159 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCce-ecChhhcCCceEEE--ecCCCceeeeeecCcc
Confidence 999 44555555322 23566778999988888742 1221 23444433333310 00000111111121 2
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCC--------EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENA--------LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg--------~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~ 245 (1100)
-+..++..+++.+ +|. ++++.... .|.+++-.+ ....+.-.+..+
T Consensus 160 ~~~lSiRHLa~~~--~G~-V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~---------------------- 212 (305)
T PF07433_consen 160 LHQLSIRHLAVDG--DGT-VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQW---------------------- 212 (305)
T ss_pred ccccceeeEEecC--CCc-EEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHH----------------------
Confidence 2336789999955 676 66665432 222222211 111111000000
Q ss_pred CCCCCceEEEEEecCCCCEEEE-EEcCCcEEEEecCCCCC
Q 001321 246 QPEEKEISALCWASSSGSILAV-GYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 246 ~~~~~~V~sl~w~spdg~~l~s-g~~DG~I~lWd~~~~~~ 284 (1100)
..-.+.+-++++. ++|..+++ +=.-|.+.+||..++..
T Consensus 213 ~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 213 RRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred HhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECCCCCE
Confidence 0116789999975 88877754 45667899999988743
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.50 E-value=0.0065 Score=63.61 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 117 ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 117 ~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
...|+++.|+..|.|+++|+..|.|-++.-....+.-..---.+.+|.+.=-+.-+..-...|..|.|-.......++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 35799999999999999999999775554332221111000012333211000001111256888888544445579999
Q ss_pred EcCCEEEEEEccCCEEE
Q 001321 197 YENALVILWDVSEAQII 213 (1100)
Q Consensus 197 ~~dg~V~lwdl~~~~~~ 213 (1100)
..|.+|++|-+.+..+.
T Consensus 106 tNdktiKlWKiyeknlk 122 (460)
T COG5170 106 TNDKTIKLWKIYEKNLK 122 (460)
T ss_pred cCCceeeeeeeecccch
Confidence 99999999999877543
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=7.2e-05 Score=87.46 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=113.1
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC--cE
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EI 100 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~--~I 100 (1100)
|..+.++| -++..-+|+||+-..+.|++|+..|.|++|+.. +...--...|..+|+.+.=+.||..+++.++-. -.
T Consensus 1091 Fr~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 44444554 356889999999999999999999999999994 445556678999999999999998877766533 57
Q ss_pred EEEEcCC-CceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 101 QVWSLES-RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 101 ~vWd~~s-~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
.+|+..+ +...+++.. -.|+.|+.....-++|+......||++.+ +...+. |--+... . . -.=
T Consensus 1170 aLW~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT--~~~l~t-ylt~~~~--~----~----y~~ 1233 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQT--CSPLQT-YLTDTVT--S----S----YSN 1233 (1516)
T ss_pred HHhccccccCccccccc---cceeehhhhHHHHHhcccccceEEEeccc--CcHHHH-hcCcchh--h----h----hhc
Confidence 8999865 334444422 34778887777778888776666766554 433321 1111000 0 0 112
Q ss_pred EEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
.+..|+|++ +++ ..||. +||++....+..|
T Consensus 1234 n~a~FsP~D--~LI---lndGv--LWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1234 NLAHFSPCD--TLI---LNDGV--LWDVRIPEAIHRF 1263 (1516)
T ss_pred cccccCCCc--ceE---eeCce--eeeeccHHHHhhh
Confidence 566788853 322 46774 8999887655444
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0046 Score=68.00 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=106.3
Q ss_pred CCcEEEEEecCCcEEEeeCCCC----ceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 494 VDRVYLAGYHDGSVRIWDATYP----VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 494 ~~~~l~Tg~~DGtIriWd~~~~----~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
.+...++....|.|.-|..... .-...+.++.+-.-..........+++.|+|++..+++-+.|..|+++.+.++.
T Consensus 155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 3335667777899999988741 111111111111111122344578899999999999999999999999998874
Q ss_pred CCcce-------eeeccCCCceeeccCCCcceeEEEEeecCc-CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEe
Q 001321 570 DAKNF-------LFVLETKSEVHALPEGKISLCRAVFSLVNS-PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1100)
Q Consensus 570 ~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~-~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~ 641 (1100)
--... ++.....-++..+.-+.....-..+..|.. +-+...|...|++|.-|+-=| |.|+++.++++.
T Consensus 235 lvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~--- 310 (558)
T KOG0882|consen 235 LVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV--- 310 (558)
T ss_pred hhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEE---
Confidence 21111 111111111111111100000011222333 346788999999999999988 899999999987
Q ss_pred ecCCCCCCCeEEEEEeecccC---------ccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 642 DDISGSSSPIISMTWTEFKNT---------HSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 642 ~~~~~~~~~V~sl~fs~~~~~---------~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
...|....|.-+..+-|... .+.+.+|... ...+..+++|+-+-...++|.
T Consensus 311 -ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~-----~~~dpt~~c~a~kk~rfylf~ 370 (558)
T KOG0882|consen 311 -RILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLE-----FQKDPTIVCTAFKKNRFYLFR 370 (558)
T ss_pred -EEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccc-----cCCCCeEEEeeeecceEEEEe
Confidence 33344444444433322111 0112222111 234446666666777777773
No 326
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.45 E-value=0.00055 Score=79.05 Aligned_cols=124 Identities=14% Similarity=0.169 Sum_probs=95.1
Q ss_pred ceeeeecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCceEE--EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEE
Q 001321 26 LRIAVHYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQV 102 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~v 102 (1100)
.-+...+||...|+.+-|.|+. ..||+++.|-.++.||......- ....-...-+.|.|+.....+++.+..+.|.|
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3355678999999999999976 58999999999999999655433 33334445678888876677888888999999
Q ss_pred EEcCCC-ceeeee-ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecC
Q 001321 103 WSLESR-SLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 103 Wd~~s~-~~l~~~-~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
||++.+ ..++.+ .+-..|..++|..- ...+.+.+.||+|+.|+|+..
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999876 455555 55567777777643 346778889999999999863
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.43 E-value=0.021 Score=70.63 Aligned_cols=201 Identities=15% Similarity=0.202 Sum_probs=128.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc----CCCcee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL----ESRSLA 111 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~----~s~~~l 111 (1100)
..|..+.|--++.-+.+++.+|.|.+-|......-....-...|.+++|+||+..|+-++..+++.+-.- -..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 5788899999999999999999999998877666666666778999999999999999998888877543 111111
Q ss_pred ----------eeeec-------------------------------CCCeEEEEEecCCCEEEEEe-----CCCcEEEEE
Q 001321 112 ----------CCLKW-------------------------------ESNITAFSVISGSHFMYIGD-----ENGLMSVIK 145 (1100)
Q Consensus 112 ----------~~~~~-------------------------------~~~Vt~~~~s~~~~~l~~G~-----~dG~V~Iw~ 145 (1100)
....+ ...=+.++|-.+|+++|+.. .-..|+||+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 00011 11224588999999999843 225788887
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC---CEEEEEEccCCEEEEEecCCccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQ 222 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d---g~V~lwdl~~~~~~~~~~~~~~~ 222 (1100)
-+ +.+... ..+ ..+--.+++|-| .|..+++...+ +.|++|.-.+- .|..+.
T Consensus 229 rE---g~Lns~--se~-------------~~~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL------~hg~f~ 282 (1265)
T KOG1920|consen 229 RE---GALNST--SEP-------------VEGLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGL------RHGEFV 282 (1265)
T ss_pred cc---chhhcc--cCc-------------ccccccceeecC--CCCeEeeeeecCCCCcEEEEecCCc------cccccc
Confidence 55 333321 011 113446788977 57756665543 34555542221 121111
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE---EEcCCcEEEEecCCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV---GYIDGDILLWNTSTTA 283 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s---g~~DG~I~lWd~~~~~ 283 (1100)
+... .....|..++|. .++..|++ ......|.+|-..+-.
T Consensus 283 l~~p--------------------~de~~ve~L~Wn-s~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 283 LPFP--------------------LDEKEVEELAWN-SNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCc--------------------ccccchheeeec-CCCCceeeeecccccceEEEEEecCeE
Confidence 2110 114459999997 88888777 3334449999987654
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0013 Score=72.19 Aligned_cols=215 Identities=14% Similarity=0.150 Sum_probs=141.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE----EeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcC
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLE 106 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~----~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~ 106 (1100)
|=|...|+.+.-.. ..++.+++.||.++.|.....+.+ ....|-+.|..++.+.++..+.|++. |..++++|++
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 45666777766553 678999999999999998664443 33467789999999999888888787 9999999998
Q ss_pred CCceeeee---ecCCCeEEEEEecCC--CEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 107 SRSLACCL---KWESNITAFSVISGS--HFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 107 s~~~l~~~---~~~~~Vt~~~~s~~~--~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.-....-+ ..++.+.++. ++.. ..++++. .+|.|.|+|-..+ ..+.-|.-.- +..+|.
T Consensus 85 n~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d---~~q~~~fkkl------------H~sPV~ 148 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGD---FCQDGYFKKL------------HFSPVK 148 (558)
T ss_pred ccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCC---cCccceeccc------------ccCceE
Confidence 86554333 3444333332 2221 2566665 4677766553221 1111122222 238999
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccC------CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSE------AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~------~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
.+.+.|. +..+++....|.|.-|.... .++...+.| +..+- +-+ .-....++
T Consensus 149 ~i~y~qa--~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~-eTdLy--------~f~-----------K~Kt~pts 206 (558)
T KOG0882|consen 149 KIRYNQA--GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKH-ETDLY--------GFP-----------KAKTEPTS 206 (558)
T ss_pred EEEeecc--ccceeeccccceeEeecCCCcccCccccccccccc-cchhh--------ccc-----------ccccCccc
Confidence 9999884 55588888899999999874 111111111 00000 000 01556778
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEecCCCCCCC
Q 001321 255 LCWASSSGSILAVGYIDGDILLWNTSTTASTK 286 (1100)
Q Consensus 255 l~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~ 286 (1100)
+++. |+|..+.+-..|..|++++..++...+
T Consensus 207 ~Efs-p~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 207 FEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eEEc-cccCcccccCcccEEEEEEeccchhhh
Confidence 9975 999999999999999999999886444
No 329
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.33 E-value=0.76 Score=56.33 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=68.7
Q ss_pred CeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCC--
Q 001321 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSG-- 615 (1100)
Q Consensus 538 ~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g-- 615 (1100)
.++....+.+...+++++.++.+....+....- ....-......|.||.++|-|
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l------------------------~e~~~~~~e~evaCLDisp~~d~ 544 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGL------------------------REVSHKEFEYEVACLDISPLGDA 544 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccce------------------------eeeeeheecceeEEEecccCCCC
Confidence 455555555555777777777776666665410 011113346789999999854
Q ss_pred ----CEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecc
Q 001321 616 ----AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD 691 (1100)
Q Consensus 616 ----~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~d 691 (1100)
+++|+|.++..+.++-.....++ ..+...+.+.-..++-+.....+ ..+|+|+..|
T Consensus 545 ~~~s~~~aVG~Ws~~~~~l~~~pd~~~-~~~~~l~~~~iPRSIl~~~~e~d-------------------~~yLlvalgd 604 (1096)
T KOG1897|consen 545 PNKSRLLAVGLWSDISMILTFLPDLIL-ITHEQLSGEIIPRSILLTTFEGD-------------------IHYLLVALGD 604 (1096)
T ss_pred CCcceEEEEEeecceEEEEEECCCcce-eeeeccCCCccchheeeEEeecc-------------------ceEEEEEcCC
Confidence 38999999887777655432222 11111122233334444433321 3669999999
Q ss_pred eeEEEEe
Q 001321 692 AKISIVG 698 (1100)
Q Consensus 692 g~v~v~d 698 (1100)
|.++-|-
T Consensus 605 G~l~~fv 611 (1096)
T KOG1897|consen 605 GALLYFV 611 (1096)
T ss_pred ceEEEEE
Confidence 9988776
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.33 E-value=0.033 Score=59.51 Aligned_cols=174 Identities=16% Similarity=0.236 Sum_probs=99.8
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-
Q 001321 32 YGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR- 108 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~- 108 (1100)
-|+...++.|+|+|+.+ +.|+....+.|..++.++.-.. .....-+....|++..++.++++--.++.+.+.++...
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 47788899999999855 6666666688888888653222 22333457899999988766665556889999998332
Q ss_pred -ce----eeee--e----cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC--CeeeeeceeecccccccccCCCCCC
Q 001321 109 -SL----ACCL--K----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADE--GKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 109 -~~----l~~~--~----~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.+ ...+ . ....+-.+++++.++.++++-+..-..|+.++... ..+... .... +.. ....
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~-~~~~---~~~----~~~~ 169 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS-DDQD---LDD----DKLF 169 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE-E-HH---HH-----HT--
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec-cccc---ccc----ccce
Confidence 11 1112 1 22458999999999999999888777888887522 111110 0000 000 1112
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~ 215 (1100)
...+.++++||. .+.+++.+..+..|..+| .+|+++..
T Consensus 170 ~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 170 VRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSS 207 (248)
T ss_dssp SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred eccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence 255889999997 566566677778889999 55665544
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.28 E-value=0.3 Score=50.63 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=47.4
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
..+++++|+..+.+.--|..+|.+.-...- ..+|.+-+.. -|++++.|
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~il------------------------------g~RiE~sa~v--vgdfVV~G 69 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAIL------------------------------GVRIECSAIV--VGDFVVLG 69 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhh------------------------------CceeeeeeEE--ECCEEEEE
Confidence 356789999999998899999887643221 4445443322 37889999
Q ss_pred EcCCcEEEEecCCCCC
Q 001321 269 YIDGDILLWNTSTTAS 284 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~~~ 284 (1100)
+..|-+.+-+.++|..
T Consensus 70 Cy~g~lYfl~~~tGs~ 85 (354)
T KOG4649|consen 70 CYSGGLYFLCVKTGSQ 85 (354)
T ss_pred EccCcEEEEEecchhh
Confidence 9999999999988843
No 332
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0029 Score=76.75 Aligned_cols=113 Identities=19% Similarity=0.328 Sum_probs=82.9
Q ss_pred CeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCE
Q 001321 538 PVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1100)
Q Consensus 538 ~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~ 617 (1100)
++..++-+--+..++.|+..|+|...|+..+-. +...-..-+++|++++|+.+|++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~------------------------~~~~ne~v~~~Vtsvafn~dg~~ 144 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLG------------------------PLHQNERVQGPVTSVAFNQDGSL 144 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccc------------------------hhhcCCccCCcceeeEecCCCce
Confidence 444555555677899999999999999987511 11111234789999999999999
Q ss_pred EEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEE
Q 001321 618 LAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1100)
Q Consensus 618 LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~ 697 (1100)
++.|..+|.|.+||+..++++ +.+..|..+++++-+.-+-.. ...++++...|+ +|
T Consensus 145 l~~G~~~G~V~v~D~~~~k~l---~~i~e~~ap~t~vi~v~~t~~-------------------nS~llt~D~~Gs--f~ 200 (1206)
T KOG2079|consen 145 LLAGLGDGHVTVWDMHRAKIL---KVITEHGAPVTGVIFVGRTSQ-------------------NSKLLTSDTGGS--FW 200 (1206)
T ss_pred eccccCCCcEEEEEccCCcce---eeeeecCCccceEEEEEEeCC-------------------CcEEEEccCCCc--eE
Confidence 999999999999999998887 333447777777776633222 136888888887 56
Q ss_pred e
Q 001321 698 G 698 (1100)
Q Consensus 698 d 698 (1100)
.
T Consensus 201 ~ 201 (1206)
T KOG2079|consen 201 K 201 (1206)
T ss_pred E
Confidence 5
No 333
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.22 E-value=0.0013 Score=75.96 Aligned_cols=200 Identities=12% Similarity=0.179 Sum_probs=134.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeCCCCC--CEEEEEEEeCC--CEEEEEECCCcEEEEEcCCC
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQL--PYKNLEFLQNQ--GFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~--~V~~l~fs~d~--~~Lls~s~d~~I~vWd~~s~ 108 (1100)
+.+.+.++.++|-|+-+|.++.-| +.+.|++. ........|-. .|-.++|++.. .+-+...+...-.+|++...
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 467788999999999999999876 44555532 22233334443 47788888743 34444445666789998643
Q ss_pred --ce--eeeeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 109 --SL--ACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 109 --~~--l~~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
.. .....|...|+.+-|.|+. ..+++.+.+-.|..|++.....-+. ....+. .+-..|.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y-----s~~~w~-----------s~asqVk 165 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY-----STSSWR-----------SAASQVK 165 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee-----eeeccc-----------ccCceee
Confidence 23 3444777899999999886 4788899999999999886432222 222221 4456677
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEE-E-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQI-I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
|+-. ++. +++.+....|++||++-+.. + ...+| -..|.++.|....
T Consensus 166 wnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~------------------------------vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 166 WNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKGH------------------------------VSSVNSIDFNRFK 213 (1081)
T ss_pred eccc-Ccc-hhhhccCCceEEEeccCCCcceEEeccc------------------------------ceeeehHHHhhhh
Confidence 8544 454 77788888899999987743 2 23333 4455556655444
Q ss_pred CCEEEEEEcCCcEEEEecCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
-..+.+.+.||+|++||.+..
T Consensus 214 ~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 214 YSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred hhhhcccCCCCceeeeccccc
Confidence 456889999999999998754
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.011 Score=70.01 Aligned_cols=146 Identities=10% Similarity=0.066 Sum_probs=100.9
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeC-----CCEEEEEECCCcEEEEEc---CCCceeeeee
Q 001321 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN-----QGFLISITNDNEIQVWSL---ESRSLACCLK 115 (1100)
Q Consensus 44 sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d-----~~~Lls~s~d~~I~vWd~---~s~~~l~~~~ 115 (1100)
+-.|.++|+|+.||.|.|.+....+......-+.|++.++++|| .++.++++..| +.+..- ..+..+....
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 34599999999999999999977776666677789999999998 46789998888 666542 2222333446
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEE
Q 001321 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~ 195 (1100)
..|.|.++.|. ++++|-++..| |+|++....+ .+.. ++... ..+++. .-...+.|.+ .++|++
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~-~l~~----i~~p~-----~~~R~e-~fpphl~W~~---~~~LVI 221 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ-RLTN----IPPPS-----QSVRPE-LFPPHLHWQD---EDRLVI 221 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccc-eeec----cCCCC-----CCCCcc-cCCCceEecC---CCeEEE
Confidence 67899999985 78899999999 6898876522 2221 32211 111111 2345678855 335889
Q ss_pred EEcCCEEEEEEcc
Q 001321 196 AYENALVILWDVS 208 (1100)
Q Consensus 196 ~~~dg~V~lwdl~ 208 (1100)
|..|.. .|..++
T Consensus 222 GW~d~v-~i~~I~ 233 (846)
T KOG2066|consen 222 GWGDSV-KICSIK 233 (846)
T ss_pred ecCCeE-EEEEEe
Confidence 888875 777776
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.20 E-value=0.043 Score=58.91 Aligned_cols=146 Identities=12% Similarity=0.193 Sum_probs=90.5
Q ss_pred CCCeEEEEeCCCceEEEeCCCCCCEEEEE--EEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEE
Q 001321 55 LDGRIKVIGGDGIEGLLISPSQLPYKNLE--FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM 132 (1100)
Q Consensus 55 ~dG~I~vw~~~~~~~~~~~~h~~~V~~l~--fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l 132 (1100)
.+|.|..||....+.+-......++.... ..++++++++++.++.|..||..+|+++.....++.+.... ...+..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 36888999985555543332221122222 44456788888999999999999999998887665433332 4456677
Q ss_pred EEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE
Q 001321 133 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 133 ~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
+++..++. ++.++..++++. +.+.... .+...........+ .+.+++++..++.|..+|+.+|++
T Consensus 80 ~v~~~~~~--l~~~d~~tG~~~---W~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 80 YVGTSDGS--LYALDAKTGKVL---WSIYLTS------SPPAGVRSSSSPAV----DGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EEEETTSE--EEEEETTTSCEE---EEEEE-S------SCTCSTB--SEEEE----ETTEEEEEETCSEEEEEETTTTEE
T ss_pred ccccceee--eEecccCCccee---eeecccc------ccccccccccCceE----ecCEEEEEeccCcEEEEecCCCcE
Confidence 88888884 466666667776 3321000 00000011222223 366688999899999999999988
Q ss_pred EEEe
Q 001321 213 IFVG 216 (1100)
Q Consensus 213 ~~~~ 216 (1100)
+...
T Consensus 145 ~w~~ 148 (238)
T PF13360_consen 145 LWKY 148 (238)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.18 E-value=0.017 Score=52.46 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=71.2
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 38 ASILAFDH---IQ-RLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 38 v~~la~sp---~~-~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
|++|++.. +| ..|.+||+|..||||..+ +.+.+......|+.|+-... .+++.+-.+|+|.|++-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee
Confidence 55665543 32 689999999999999776 56666666778888888887 6788888899999997533 3344
Q ss_pred eecCCCeEEEEEecCC----CEEEEEeCCCcEE
Q 001321 114 LKWESNITAFSVISGS----HFMYIGDENGLMS 142 (1100)
Q Consensus 114 ~~~~~~Vt~~~~s~~~----~~l~~G~~dG~V~ 142 (1100)
......++++++..-. .-|++|-++|.|-
T Consensus 77 iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4444456666554322 3799999999763
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.13 E-value=0.055 Score=58.73 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=102.6
Q ss_pred EEEcCCCCEEEEEECC-----CeEEEEeCC-CceEEEe-CCCCCCEEEEEEEeCCCEEEEEEC-----------------
Q 001321 41 LAFDHIQRLLAIATLD-----GRIKVIGGD-GIEGLLI-SPSQLPYKNLEFLQNQGFLISITN----------------- 96 (1100)
Q Consensus 41 la~sp~~~lLA~gs~d-----G~I~vw~~~-~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~----------------- 96 (1100)
-+||+||++|.+--.| |.|-|||.. +.+.+-+ ..|.-.--.+.+.|||..|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 5899999999987555 999999997 5555533 344445566778999877776542
Q ss_pred -CCcEEEEEcCCCceeeeeec-----CCCeEEEEEecCCCEEEEEeCCCc-------EEEEEEecCCCeeeeeceeeccc
Q 001321 97 -DNEIQVWSLESRSLACCLKW-----ESNITAFSVISGSHFMYIGDENGL-------MSVIKYDADEGKLFQLPYNISAD 163 (1100)
Q Consensus 97 -d~~I~vWd~~s~~~l~~~~~-----~~~Vt~~~~s~~~~~l~~G~~dG~-------V~Iw~~d~~~~~l~~~~~~i~~~ 163 (1100)
+..+.+.|..+++++..... .-.|..+++++++..++..-..|. |-+++.+ ..+.. +..+..
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---~~~~~--~~~p~~ 210 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---GALRL--LPAPEE 210 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC---Cccee--ccCChH
Confidence 12477788889988877533 346889999888776555433331 1111111 11111 112211
Q ss_pred ccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-CEEEEEEccCCEEEEE
Q 001321 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-ALVILWDVSEAQIIFV 215 (1100)
Q Consensus 164 ~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-g~V~lwdl~~~~~~~~ 215 (1100)
.. ..-.+.+-+|++++ ++..+++.+-. +.+.+||..+++++..
T Consensus 211 ~~-------~~l~~Y~gSIa~~~--~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 211 QW-------RRLNGYIGSIAADR--DGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred HH-------HhhCCceEEEEEeC--CCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 10 01127899999965 77767666665 4888999999987654
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.002 Score=73.93 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=76.3
Q ss_pred CCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeE-EEEEcCCC
Q 001321 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSG 615 (1100)
Q Consensus 537 ~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~Vt-sLafSp~g 615 (1100)
..|.-+.|+|.-..+|.+..+|.|.+++++-. .+.++.-|..+|+ +++|.|||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q--------------------------Rlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ--------------------------RLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccc--------------------------eeEeccCCCCccceeeeecCCC
Confidence 46888999999999999999999999998842 3455666777887 99999999
Q ss_pred CEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEe
Q 001321 616 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1100)
Q Consensus 616 ~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs 657 (1100)
++||+|..||+|++.|++.+..+.... ......|.++-|.
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~~--~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSFL--FSVETDISKGIWD 114 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceeccc--cccccchheeecc
Confidence 999999999999999999998873321 1245677777775
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.08 E-value=0.044 Score=64.87 Aligned_cols=161 Identities=9% Similarity=0.087 Sum_probs=102.6
Q ss_pred EEEcCCCCEEEEEEC-CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE------------------------
Q 001321 41 LAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT------------------------ 95 (1100)
Q Consensus 41 la~sp~~~lLA~gs~-dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s------------------------ 95 (1100)
+-++|||+.|...+. .+.+.+.|.+..++.....-.+.-..++++++|+++.+.+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 334567765543322 3677777777666554433333445667777777776664
Q ss_pred ----------------CCCcEEEEEcCC-----CceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCee
Q 001321 96 ----------------NDNEIQVWSLES-----RSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKL 153 (1100)
Q Consensus 96 ----------------~d~~I~vWd~~s-----~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l 153 (1100)
.++.|.|+|..+ .+++..+.-+.....+.++|++++++++.. +.+|.|.++.....-+
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 236689999888 467777777788899999999999888775 8999999987522111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
.. ++.- .......+.. .......+|.+ +|+.+.+-+-|..|..||+..
T Consensus 358 ~~---~~~~--~~~vvaevev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DG---KIKP--RDAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hc---cCCc--cceEEEeecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 00 0000 0000000111 13456778844 688788899999999999987
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.086 Score=63.12 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=90.3
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCC-eeEEEEeeCCCeEEEEecCc-----eEEEE
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP-VSTLSFCFINSSLAVGNEFG-----LVYIY 563 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~-Vt~lafspd~~~Lasg~~dG-----~V~lw 563 (1100)
.+++.+..++.|+.||.|-+.+-+-..+. .+..+... |+.|-......+|++-+.|+ .|+||
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~------------~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIR------------GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeee------------hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence 47788889999999999988876543322 12233333 55555555556888777764 58999
Q ss_pred EecCCCCCcceeeeccCCCceeeccCCCcceeE--EEEee-----cCcCeEEEEEcCCCCEEEEEeCCceEEEEecC---
Q 001321 564 NLNGSLDAKNFLFVLETKSEVHALPEGKISLCR--AVFSL-----VNSPVRALQFTSSGAKLAVGFECGRVAVLDMN--- 633 (1100)
Q Consensus 564 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~-----h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~--- 633 (1100)
+++.... ...|+|+ ..... ...|+++|+.|.+-+.+|+|..+|.|..+.-.
T Consensus 98 ~lek~~~-------------------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R 158 (933)
T KOG2114|consen 98 DLEKVDK-------------------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR 158 (933)
T ss_pred cccccCC-------------------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh
Confidence 9987521 1124555 12222 25789999999999999999999999888422
Q ss_pred --CceEEEEeecCCCCCCCeEEEEEeecc
Q 001321 634 --LLSVLFFTDDISGSSSPIISMTWTEFK 660 (1100)
Q Consensus 634 --~~~~~~~~~~~~~~~~~V~sl~fs~~~ 660 (1100)
+.+.. ....-.++||+|.|...+
T Consensus 159 Drgsr~~----~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 159 DRGSRQD----YSHRGKEPITGLALRSDG 183 (933)
T ss_pred cccccee----eeccCCCCceeeEEecCC
Confidence 12222 112357899999998544
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.024 Score=62.55 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=100.2
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee-----------
Q 001321 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC----------- 112 (1100)
Q Consensus 44 sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~----------- 112 (1100)
...++.|++|+++| |++++...........+..+|+.+...++-+.|+..+ |+.+.++++..-....
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 34578999999999 8999884433334444445599999999888888876 5999999987654333
Q ss_pred ----eeecCCCeEEEE--EecC-CCEEEEEeCCCcEEEEEEecCCCee--eeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 113 ----CLKWESNITAFS--VISG-SHFMYIGDENGLMSVIKYDADEGKL--FQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 113 ----~~~~~~~Vt~~~--~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
.......+..++ -... ...|+++... .|.||.+....... ....+.++ ..+.+++
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp---------------~~~~~i~ 145 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLP---------------DPPSSIA 145 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcC---------------CCcEEEE
Confidence 222334566666 2223 3455555555 78899888643222 11123444 7789999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
|. ++.+++|+.++. .+.|+.++......
T Consensus 146 ~~----~~~i~v~~~~~f-~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 146 FL----GNKICVGTSKGF-YLIDLNTGSPSELL 173 (275)
T ss_pred Ee----CCEEEEEeCCce-EEEecCCCCceEEe
Confidence 94 445888888776 78999987766554
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.18 Score=58.78 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEcCCCCEEEEEECC----------C-eEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 41 LAFDHIQRLLAIATLD----------G-RIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 41 la~sp~~~lLA~gs~d----------G-~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
+|.+|.|..+|+..++ . .|+||+..+..+... ..+ +.|.++.|..+ ..|+.+..||.++++|+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCc
Confidence 5666666666666544 2 599999987755432 233 89999999987 78999999999999999755
Q ss_pred c
Q 001321 109 S 109 (1100)
Q Consensus 109 ~ 109 (1100)
.
T Consensus 112 ~ 112 (410)
T PF04841_consen 112 F 112 (410)
T ss_pred e
Confidence 4
No 343
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.0023 Score=48.69 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=36.9
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc
Q 001321 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI 67 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~ 67 (1100)
++.+.....+..|.+++|+|...+||+|+.+|.|.||.++..
T Consensus 2 f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred cceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 455677788999999999999999999999999999988543
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.79 E-value=0.022 Score=66.11 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCEEEEEE---CC-CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CC--cEEEEEcCCCce
Q 001321 38 ASILAFDHIQRLLAIAT---LD-GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DN--EIQVWSLESRSL 110 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs---~d-G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~--~I~vWd~~s~~~ 110 (1100)
+..-+|+|++..++.-+ .. .+|.+++++..+........+.-..-+|+|||.+|+-+.. |+ .|.+.|+.++..
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~ 274 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL 274 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc
Confidence 34467788887766553 22 4688888866555444445555667789999988876654 44 477888888885
Q ss_pred eeeeecCCCeEEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~~l~-~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.......+.-+.=.|+|++++++ +.+..|.-.||.++.+.+...+. +... ..-..-.|+| +
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri--T~~~--------------~~~~~p~~Sp--d 336 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL--TFSG--------------GGNSNPVWSP--D 336 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe--eccC--------------CCCcCccCCC--C
Confidence 55344455555778899998766 45567888889998877666542 1221 1111344655 7
Q ss_pred CCEEEEEEcC-CE--EEEEEccCCE
Q 001321 190 GNRVLIAYEN-AL--VILWDVSEAQ 211 (1100)
Q Consensus 190 g~~ll~~~~d-g~--V~lwdl~~~~ 211 (1100)
|++++..... |. |.+.|+.++.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCC
Confidence 8877766643 43 5666665554
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.76 E-value=0.2 Score=57.52 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=69.7
Q ss_pred cCCCCEEEEEEC---------CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 44 DHIQRLLAIATL---------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 44 sp~~~lLA~gs~---------dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
|||+++++..+. .+.+.|||+...+...+......+....|||+|.+++-+. ++.|.+++..++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEec
Confidence 688888888543 3789999998887776666678899999999999888886 788999999888544333
Q ss_pred ecC------------------CCeEEEEEecCCCEEEEEe-CCCcEEEEE
Q 001321 115 KWE------------------SNITAFSVISGSHFMYIGD-ENGLMSVIK 145 (1100)
Q Consensus 115 ~~~------------------~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~ 145 (1100)
... +.-.++-|+|++++|+... .+..|+.+.
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 111 1346888999999887654 334444443
No 346
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.039 Score=67.47 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=75.6
Q ss_pred CCCEEEEEECCCeEEEEeCCCceE-EEeCC-CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCC---
Q 001321 46 IQRLLAIATLDGRIKVIGGDGIEG-LLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESN--- 119 (1100)
Q Consensus 46 ~~~lLA~gs~dG~I~vw~~~~~~~-~~~~~-h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~--- 119 (1100)
.+.++|+||..|.|-.+|..+.-. +..-. -.+||++++|+.+|.+|+.|-.+|.|.+||...+++++.+ .+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 466899999999999998866422 22222 3469999999999999999999999999999999888777 33333
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 120 ITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 120 Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
|.-+-+..++..+++++..|. +|.+-.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 333333445558899999996 587653
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.70 E-value=0.33 Score=53.50 Aligned_cols=161 Identities=16% Similarity=0.094 Sum_probs=88.1
Q ss_pred CCCCcEEEEEecCCcEEEeeCCC-CceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCC
Q 001321 492 HSVDRVYLAGYHDGSVRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLD 570 (1100)
Q Consensus 492 s~~~~~l~Tg~~DGtIriWd~~~-~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~ 570 (1100)
...++.|+.|.++| |.+++... ..... + .+..+|+.|...++-+.|++-+ ||.+++|++..-..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~----------i---~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTR----------I---LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCcccee----------E---eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 34566888899999 89998832 22210 1 1113499999999877776554 49999999987532
Q ss_pred CcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEE---EcCCCCEEEEEeCCceEEEEecCCceEEE-EeecCCC
Q 001321 571 AKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ---FTSSGAKLAVGFECGRVAVLDMNLLSVLF-FTDDISG 646 (1100)
Q Consensus 571 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLa---fSp~g~~LavGs~dG~V~vwD~~~~~~~~-~~~~~~~ 646 (1100)
..........+. . ...........+...+ -...+.+|+++-.. .|.||....+...+ .......
T Consensus 69 ~~~~~~~~~~~~--------~---~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 69 VSTSAPLAFPKS--------R---SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cccccccccccc--------c---cccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE
Confidence 211000000000 0 0000011122333333 22234567776654 78998887643222 1111123
Q ss_pred CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCcc
Q 001321 647 SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1100)
Q Consensus 647 ~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~ 704 (1100)
.+..+.+++|. + ..+++|+.++ ..++|..+|..
T Consensus 137 lp~~~~~i~~~--~----------------------~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 137 LPDPPSSIAFL--G----------------------NKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred cCCCcEEEEEe--C----------------------CEEEEEeCCc-eEEEecCCCCc
Confidence 57889999998 1 3377776554 77788665543
No 348
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.70 E-value=0.035 Score=66.53 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=119.2
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCC-CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQL-PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFS 124 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~-~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~ 124 (1100)
...+..|..-..|..+|+.+.+......-+. .|+-++ .++++|.+++..|+|.+-|..+-+.++++ .|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 4455666666666677775554443322222 355554 45678999999999999999999999988 7888888776
Q ss_pred EecCCCEEEEEeC---------CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEE
Q 001321 125 VISGSHFMYIGDE---------NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1100)
Q Consensus 125 ~s~~~~~l~~G~~---------dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~ 195 (1100)
+ .++.|++++- |..|+|||+...+ .+. |..++ -...-+.|||. -.+++++
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~--PI~~~---------------~~P~flrf~Ps-l~t~~~V 283 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALS--PIQFP---------------YGPQFLRFHPS-LTTRLAV 283 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhh-ccC--Ccccc---------------cCchhhhhccc-ccceEEE
Confidence 6 5777776654 4456777765321 111 11122 22366789998 4556999
Q ss_pred EEcCCEEEEEE---ccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 196 AYENALVILWD---VSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 196 ~~~dg~V~lwd---l~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++..|...+-| +.....-....+ . -...+.++++ +++|+.++.|..+|
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~--------p--------------------~~s~i~~fDi-Ssn~~alafgd~~g 334 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVN--------P--------------------NGSGISAFDI-SSNGDALAFGDHEG 334 (1118)
T ss_pred EecccceeeccccccCCCccceeEEc--------c--------------------CCCcceeEEe-cCCCceEEEecccC
Confidence 99999987777 433322222111 0 0334888886 59999999999999
Q ss_pred cEEEEe
Q 001321 273 DILLWN 278 (1100)
Q Consensus 273 ~I~lWd 278 (1100)
.|.+|.
T Consensus 335 ~v~~wa 340 (1118)
T KOG1275|consen 335 HVNLWA 340 (1118)
T ss_pred cEeeec
Confidence 999998
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.69 E-value=0.11 Score=47.21 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=72.8
Q ss_pred eeEEEEee-CC---CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCC
Q 001321 539 VSTLSFCF-IN---SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSS 614 (1100)
Q Consensus 539 Vt~lafsp-d~---~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~ 614 (1100)
|++|+++. ++ ..|++|++|..||+|+=..- +. -..-.+.|++|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------------------~~-Ei~e~~~v~~L~~~~~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------------------VA-EITETDKVTSLCSLGG 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------------------EE-EEecccceEEEEEcCC
Confidence 67777765 22 58999999999999986542 22 2345678889988877
Q ss_pred CCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeE
Q 001321 615 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 694 (1100)
Q Consensus 615 g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v 694 (1100)
+ .++.|..+|+|-||+....... . .....++++.+.....+ ...-|++|=++|.|
T Consensus 54 ~-~F~Y~l~NGTVGvY~~~~RlWR----i--KSK~~~~~~~~~D~~gd------------------G~~eLI~GwsnGkv 108 (111)
T PF14783_consen 54 G-RFAYALANGTVGVYDRSQRLWR----I--KSKNQVTSMAFYDINGD------------------GVPELIVGWSNGKV 108 (111)
T ss_pred C-EEEEEecCCEEEEEeCcceeee----e--ccCCCeEEEEEEcCCCC------------------CceEEEEEecCCeE
Confidence 5 5899999999999987533222 2 23445888877633222 13558999888887
Q ss_pred EE
Q 001321 695 SI 696 (1100)
Q Consensus 695 ~v 696 (1100)
-+
T Consensus 109 e~ 110 (111)
T PF14783_consen 109 EV 110 (111)
T ss_pred Ee
Confidence 53
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0074 Score=69.52 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=79.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEE-EEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
.+..+--+.|+|.-.++|+++.+|.|.+.......+....-|..+++ +++|-|||..|+.+=.||+|++-|++++..+.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 46678889999999999999999999999888444444544777777 99999999999999999999999999999988
Q ss_pred e--eecCCCeEEEEEe
Q 001321 113 C--LKWESNITAFSVI 126 (1100)
Q Consensus 113 ~--~~~~~~Vt~~~~s 126 (1100)
. +.....|+++.|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 8 5677888888887
No 351
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.63 E-value=1.6 Score=54.24 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=25.2
Q ss_pred CCceEEEEEecCC---CCEEEEEEcCCcEEEEecCCC
Q 001321 249 EKEISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 249 ~~~V~sl~w~spd---g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.-.|..+.|+ |. +.+|++-.+|+.||+||+...
T Consensus 146 ~~~i~qv~Wh-P~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWH-PWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEc-CCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3456677786 55 588999999999999998644
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.49 E-value=0.0081 Score=42.47 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=33.4
Q ss_pred eEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 595 CRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 595 ~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
+...+..|...|++++|++.+.++++|+.||.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.39 E-value=0.091 Score=64.65 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=92.9
Q ss_pred ECCCcEEEEEcCCCceeeeeecCCCeEEEEEecC-------CCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 95 TNDNEIQVWSLESRSLACCLKWESNITAFSVISG-------SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~-------~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
...+.|.-.|++.|+++........+.-..+.|+ ....++|..+..+..||......++... ..+..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~----~~k~Y-- 574 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS----QSKQY-- 574 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec----ccccc--
Confidence 3568899999999999999866655544555554 3456889888888888876654444321 11110
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
.......|++- +.+|. |++|+.+|.||+||-...+..+.+. +.
T Consensus 575 ------~~~~~Fs~~aT--t~~G~-iavgs~~G~IRLyd~~g~~AKT~lp-------------------~l--------- 617 (794)
T PF08553_consen 575 ------SSKNNFSCFAT--TEDGY-IAVGSNKGDIRLYDRLGKRAKTALP-------------------GL--------- 617 (794)
T ss_pred ------ccCCCceEEEe--cCCce-EEEEeCCCcEEeecccchhhhhcCC-------------------CC---------
Confidence 01145677777 55776 9999999999999943322222220 00
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
..+|..++- +.||++|+..|. ..|.|++..
T Consensus 618 -G~pI~~iDv-t~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 618 -GDPIIGIDV-TADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred -CCCeeEEEe-cCCCcEEEEeec-ceEEEEEEe
Confidence 457889984 699999888774 678888763
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.31 E-value=0.52 Score=50.46 Aligned_cols=175 Identities=17% Similarity=0.294 Sum_probs=94.5
Q ss_pred CCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeeeeecC--CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001321 75 SQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~ 151 (1100)
-...++.|.|.|+.+.|+++.. .+.|...+. .|+++..+... +..-.+++..++.++++--.++.+.+..++..+.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 3345999999999888888875 556777776 47788777544 5688899988887777766789888888865443
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC---CEEEEEecCCccccccccc
Q 001321 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDGVV 228 (1100)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~---~~~~~~~~~~~~~~~~~l~ 228 (1100)
.+... .++. -..+.+..+...+.+|+|.| .+++|+++-+..-..+|.+.. ..........++.
T Consensus 99 ~~~~~--~~~~----~~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~------ 164 (248)
T PF06977_consen 99 SLDRA--DVQK----ISLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD------ 164 (248)
T ss_dssp T--EE--EEEE----EE---S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH------
T ss_pred ccchh--hceE----EecccccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeeccccccc------
Confidence 33211 0000 01122222336799999987 466688888887777777765 1111111000000
Q ss_pred CCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 229 ~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
.....-..+.++.++...|.+++-...+..|..+|.
T Consensus 165 ---------------~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 165 ---------------DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp ----------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ---------------cccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 000114457788887444555666666777888884
No 355
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.28 E-value=3.2 Score=48.04 Aligned_cols=296 Identities=11% Similarity=0.110 Sum_probs=157.9
Q ss_pred CCCcEEEEEecCCcEEEeeCCCCceeEE-eeeccceeeeeecCCCCCeeEEEEee-----CCCeEEEEecCceEEEEEec
Q 001321 493 SVDRVYLAGYHDGSVRIWDATYPVFKLI-CALDAEVQGIEVAGSRAPVSTLSFCF-----INSSLAVGNEFGLVYIYNLN 566 (1100)
Q Consensus 493 ~~~~~l~Tg~~DGtIriWd~~~~~l~~~-~~l~~~~~~~~l~~h~~~Vt~lafsp-----d~~~Lasg~~dG~V~lw~l~ 566 (1100)
.+...|+.|+.+|.+|||+-........ ..++ ..+. .||-.|+.-. +...||+ -.-..+.||.+.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-----~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-----TQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEE-----EecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 3556899999999999999865543211 1111 1122 4677776543 3345665 556788899985
Q ss_pred CCCCCcceeeeccCCCceeeccCCCcceeEEEEee-cCcCeEEEEEcCC-----CCEEEEEeCCceEEEEecCCceEEEE
Q 001321 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSS-----GAKLAVGFECGRVAVLDMNLLSVLFF 640 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-h~~~VtsLafSp~-----g~~LavGs~dG~V~vwD~~~~~~~~~ 640 (1100)
..... ...+..+++...+.. .+.....+++-|- ..++++=+-||.+.+++.+.-...
T Consensus 106 ~~~g~---------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~-- 168 (418)
T PF14727_consen 106 LVDGT---------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFS-- 168 (418)
T ss_pred ecCCC---------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEE--
Confidence 43211 001111222222211 1333444444442 268999999999999998865433
Q ss_pred eecCCC--CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCcccc------
Q 001321 641 TDDISG--SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHL------ 712 (1100)
Q Consensus 641 ~~~~~~--~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~------ 712 (1100)
. .+.+ .++|+ .|.+.. ..+++++.+..|.-|+-.. |....-..
T Consensus 169 ~-~lp~~llPgPl---~Y~~~t----------------------Dsfvt~sss~~l~~Yky~~---La~~s~~~~~~~~~ 219 (418)
T PF14727_consen 169 R-FLPDFLLPGPL---CYCPRT----------------------DSFVTASSSWTLECYKYQD---LASASEASSRQSGT 219 (418)
T ss_pred E-EcCCCCCCcCe---EEeecC----------------------CEEEEecCceeEEEecHHH---hhhccccccccccc
Confidence 1 2122 45544 333222 3378888888888887111 00000000
Q ss_pred ---CCCceeE-EEEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEec
Q 001321 713 ---KKKVIAI-SMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCE 788 (1100)
Q Consensus 713 ---~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse 788 (1100)
...++.+ ..|.+. ..+ ++ .++.-. ..+ + ....+++.+|
T Consensus 220 ~~~~~~~k~l~~dWs~n---------lGE-------------~~---l~i~v~----------~~~-~--~~~~IvvLge 261 (418)
T PF14727_consen 220 EQDISSGKKLNPDWSFN---------LGE-------------QA---LDIQVV----------RFS-S--SESDIVVLGE 261 (418)
T ss_pred cccccccccccceeEEE---------CCc-------------ee---EEEEEE----------EcC-C--CCceEEEEec
Confidence 0000011 111110 000 11 011100 010 0 2778899999
Q ss_pred CeeEEEeccccee-eccccc-ccceeeeeec---CCc-eEEEEEEEecCcEEEeecCChhhhhhccccceeeeeecccc-
Q 001321 789 DSVRLYSRKSVIQ-KVKHKN-RCCWASTIEK---DEK-VCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANM- 861 (1100)
Q Consensus 789 ~~vrl~sl~~~~~-~~~~~~-~c~~~~~~~~---~~~-~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~- 861 (1100)
..+.+++..-... .+++.- +.|+.++... .+. ...++....||++.||.=-.|. |+-+..+
T Consensus 262 r~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~------------WsA~l~~~ 329 (418)
T PF14727_consen 262 RSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV------------WSAQLPHV 329 (418)
T ss_pred ceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE------------EecCCCCC
Confidence 9999998876544 444433 3344444331 222 2357788899999999877655 7666555
Q ss_pred ---ccceee-c-CCcEEEEcceeEEEEEeecCCCccc
Q 001321 862 ---DKTISA-D-NGQITLANGSEVAFVNLLAGENEFS 893 (1100)
Q Consensus 862 ---~~~~~~-s-~gq~~l~~g~e~~~~s~~~~~~~~~ 893 (1100)
++.-.| . +|=++..+.++..-|+.+.++..+-
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 222222 3 6777777778888888898887543
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.26 E-value=0.0025 Score=73.03 Aligned_cols=199 Identities=13% Similarity=0.212 Sum_probs=123.5
Q ss_pred eEEEE--EcCCCCEEEEEECCCeEEEEeCCCc---eEEEeCCCCCCEEEEEEEe-CCCEEEEEE----CCCcEEEEEcCC
Q 001321 38 ASILA--FDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQ-NQGFLISIT----NDNEIQVWSLES 107 (1100)
Q Consensus 38 v~~la--~sp~~~lLA~gs~dG~I~vw~~~~~---~~~~~~~h~~~V~~l~fs~-d~~~Lls~s----~d~~I~vWd~~s 107 (1100)
+.|+| |+.++-++|+|..+|.|-+-..... ......+|..+.++++|++ |...|+++- .|..+.|||+.+
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s 138 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINS 138 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceeccc
Confidence 44554 4556679999999999999776332 2446677888999999988 445565553 356699999998
Q ss_pred C--ceeeee----ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEE
Q 001321 108 R--SLACCL----KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 108 ~--~~l~~~----~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~s 181 (1100)
+ ...... .......++++..+.+++.+|.....|.+.++.....+.. .+.. ..|..
T Consensus 139 ~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----svnT--------------k~vqG 200 (783)
T KOG1008|consen 139 LLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----SVNT--------------KYVQG 200 (783)
T ss_pred ccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----hhhh--------------hhccc
Confidence 8 222221 1223456888888888999999998888877663111110 0110 34555
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEc-cCCE-EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDV-SEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl-~~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
+...|- .++ .++.+.||.|.+||- ..-+ .+....| .....++.+..++|.
T Consensus 201 ~tVdp~-~~n-Y~cs~~dg~iAiwD~~rnienpl~~i~~-------------------------~~N~~~~~l~~~ayc- 252 (783)
T KOG1008|consen 201 ITVDPF-SPN-YFCSNSDGDIAIWDTYRNIENPLQIILR-------------------------NENKKPKQLFALAYC- 252 (783)
T ss_pred ceecCC-CCC-ceeccccCceeeccchhhhccHHHHHhh-------------------------CCCCcccceeeEEec-
Confidence 666553 344 677888999999993 2221 1111111 001125578889985
Q ss_pred CCC--CEEEEEEcCCcEEEEecCCC
Q 001321 260 SSG--SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 260 pdg--~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|.. ...+.--..++|+++|+...
T Consensus 253 Ptrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 253 PTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cCCcchhhhhccCcceEEEeccccc
Confidence 653 33334445678999998643
No 357
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.23 E-value=0.042 Score=65.89 Aligned_cols=150 Identities=10% Similarity=0.143 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEEC---------CCcEEEEEcCC
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN---------DNEIQVWSLES 107 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~---------d~~I~vWd~~s 107 (1100)
|+-|.+ ++++|.+|...|.|.|-|....++. ..-.|.+.|+.+.. .|..|++|+- |..|+|||++.
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence 666666 4899999999999999999777665 56689998887654 4567888874 55699999999
Q ss_pred CceeeeeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 108 RSLACCLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
-+.+.-++.+..-.-+.|.|.- ..+++.++.|...+.+...........-+..|. . ..+.++.+++
T Consensus 256 mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~------------s~i~~fDiSs 322 (1118)
T KOG1275|consen 256 MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-G------------SGISAFDISS 322 (1118)
T ss_pred hhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-C------------CcceeEEecC
Confidence 9888877777666777888875 578999999988777622211111111011121 1 3478888866
Q ss_pred CCCCCEEEEEEcCCEEEEEE
Q 001321 187 NSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwd 206 (1100)
.++.++.|-.+|.|.+|.
T Consensus 323 --n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 323 --NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred --CCceEEEecccCcEeeec
Confidence 677799999999999997
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.23 E-value=0.13 Score=59.83 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=90.1
Q ss_pred eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE---CC-CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE
Q 001321 58 RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT---ND-NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMY 133 (1100)
Q Consensus 58 ~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s---~d-~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~ 133 (1100)
.+.+=|.++............+..-+|+|++..++-.+ .. ..+.++|+.+++........+.-..-+|+|++++++
T Consensus 174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~ 253 (425)
T COG0823 174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLA 253 (425)
T ss_pred eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEE
Confidence 33333444333333444445677778888887766553 23 469999999998877777788888899999998766
Q ss_pred -EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC---EEEEEEccC
Q 001321 134 -IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSE 209 (1100)
Q Consensus 134 -~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg---~V~lwdl~~ 209 (1100)
+...+|...||-+|...+.+.+ +.... +.-+.=.|+| +|+.++-.+..+ .|.++|++.
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~------------gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLPR----LTNGF------------GINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred EEECCCCCccEEEEcCCCCccee----cccCC------------ccccCccCCC--CCCEEEEEeCCCCCcceEEECCCC
Confidence 5567899899998887666543 22111 1112335666 787776665544 667777777
Q ss_pred CEEEE
Q 001321 210 AQIIF 214 (1100)
Q Consensus 210 ~~~~~ 214 (1100)
+....
T Consensus 316 ~~~~r 320 (425)
T COG0823 316 SQVTR 320 (425)
T ss_pred CceeE
Confidence 76543
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.13 E-value=0.34 Score=54.78 Aligned_cols=121 Identities=12% Similarity=0.189 Sum_probs=82.2
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCC--CEEEEEEEeCCCEEEEEECCCc
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQL--PYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~--~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
...++....+-+++.|++++.- +..|++|. ++.|++|+++..+ ......+.. .++++... +.+++.++.-..
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s 150 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS 150 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS
T ss_pred ceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC
Confidence 4567777778889999888776 44566665 5999999996666 554444444 45555544 558999998888
Q ss_pred EEEEEcCC--Cceeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 100 IQVWSLES--RSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 100 I~vWd~~s--~~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
|.++.+.. .++...- ..+..++++.+-++.+.+++++.+|.+.++.++.
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88875543 3332222 3345689999987768999999999999999985
No 360
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.73 Score=49.20 Aligned_cols=180 Identities=15% Similarity=0.164 Sum_probs=118.4
Q ss_pred CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC--CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001321 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~ 151 (1100)
+-...|+++.|+|+.+.|.++.....-.||=-..|+++.++... ...-.+.+..+++++++--.+..+.+..++.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 34445999999999999999999999999988999999988555 3566788888888888888899999999988765
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCC
Q 001321 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1100)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~ 231 (1100)
.+....+.++-.. .........+++|.|. ..+++.+=+..-+.||.+....- ....| +
T Consensus 163 ~~~~~~~~i~L~~-------~~k~N~GfEGlA~d~~--~~~l~~aKEr~P~~I~~~~~~~~-~l~~~--------~---- 220 (316)
T COG3204 163 VISAKVQKIPLGT-------TNKKNKGFEGLAWDPV--DHRLFVAKERNPIGIFEVTQSPS-SLSVH--------A---- 220 (316)
T ss_pred EEeccceEEeccc-------cCCCCcCceeeecCCC--CceEEEEEccCCcEEEEEecCCc-ccccc--------c----
Confidence 5553222333111 1111356889999774 45577777777666766653220 00001 0
Q ss_pred CCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 232 ~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
...+.+. ...--..|.++.|..+.+..++-+.+++.|.-.|...
T Consensus 221 ~~~~~~~------~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 221 SLDPTAD------RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCcccc------cceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 0000000 0001445777888756777777788888887777654
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.98 E-value=0.3 Score=57.08 Aligned_cols=58 Identities=10% Similarity=0.231 Sum_probs=40.4
Q ss_pred EEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001321 90 FLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 90 ~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
.|+.+..++.|.+||+++++++..+..+. |..+.|++++.+++..+.+. +.|++++.+
T Consensus 118 ~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~-i~il~~~~~ 175 (443)
T PF04053_consen 118 NLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDS-IYILKYNLE 175 (443)
T ss_dssp SSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-S-EEEEEE-HH
T ss_pred cEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCe-EEEEEecch
Confidence 35555556689999999999999997665 89999999999999998775 789988753
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.96 E-value=0.1 Score=64.17 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=58.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
.|-....-+|+|-+.+| +||+|+.+|.||+|+.-+....... +-+.||.+|..+.||++|++.| +..|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 45556678899988877 6899999999999998665554444 4578999999999999988877 777888885
No 363
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.94 E-value=0.58 Score=47.95 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=67.4
Q ss_pred EEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeec--eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE
Q 001321 121 TAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1100)
Q Consensus 121 t~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~ 197 (1100)
..++|+.+.+.++.-+ -+-+|.-|+|+..+|.+.... |.+... ...+.+.++ .++. ..+|++.++.+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---~~~e~~~PD-----Gm~I--D~eG~L~Va~~ 230 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---QPFESLEPD-----GMTI--DTEGNLYVATF 230 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC---CCcCCCCCC-----cceE--ccCCcEEEEEe
Confidence 4566666666555444 456666688777666554321 222211 111111111 1222 44788788888
Q ss_pred cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 198 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 198 ~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
..|+|...|..+++++..+ .++ ...|+|+||-.++-+.+++.+
T Consensus 231 ng~~V~~~dp~tGK~L~ei---------klP--------------------t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEI---------KLP--------------------TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred cCcEEEEECCCCCcEEEEE---------EcC--------------------CCceEEEEecCCCccEEEEEe
Confidence 8899999999999987665 344 788999998866656555544
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.75 E-value=0.37 Score=58.61 Aligned_cols=153 Identities=9% Similarity=0.116 Sum_probs=91.0
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCC--eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC----------
Q 001321 36 ATASILAFDHIQRLLAIAT------LDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND---------- 97 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs------~dG--~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d---------- 97 (1100)
..++..+++|+++.+|.-. .|+ .|.+++..+....+..+. ..+.-.|+|||..|.++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 4578899999999988776 244 555555533333333332 37888999998888777543
Q ss_pred --CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec-CCCeeee-eceeecccccccccCCCC
Q 001321 98 --NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDA-DEGKLFQ-LPYNISADALSEKAGFPL 173 (1100)
Q Consensus 98 --~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~-~~~~l~~-~~~~i~~~~~~~~~~~~~ 173 (1100)
+.+.+.++..+.... ...+.|..+.|+|++.+++.-. +|.|+|--+.. +.|.... .+..+....
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l--------- 495 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGL--------- 495 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeeccc---------
Confidence 223333444443322 3456799999999999888766 46665533332 3343111 011121110
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEc
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDV 207 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl 207 (1100)
...+.++.|.+ +++ |+++..++...+|.+
T Consensus 496 --~~~~~~l~W~~--~~~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 496 --GDTAVSLDWRT--GDS-LVVGRSDPEHPVWYV 524 (591)
T ss_pred --CCccccceEec--CCE-EEEEecCCCCceEEE
Confidence 13468899954 676 677776665455554
No 365
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.0071 Score=59.28 Aligned_cols=65 Identities=25% Similarity=0.487 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001321 1028 PRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1099 (1100)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1100)
|...++-.+|++ -...-++.-..=+|+.+||||||-|=++||-|++++.+|-.-++.|.++| |||
T Consensus 122 p~id~lskvkaq---v~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~m----w~~ 186 (217)
T KOG0859|consen 122 PEISKLAKVKAQ---VTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKM----WFQ 186 (217)
T ss_pred cchhHHHHHHHH---HHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHH----HHh
Confidence 556777777777 32334677888899999999999999999999999999999998887765 886
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=2.1 Score=49.63 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=130.9
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC---CCcEEEEEcCCCcee
Q 001321 36 ATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLA 111 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~---d~~I~vWd~~s~~~l 111 (1100)
.....+++++.+..+.+... ++.|.+.|.....+.....-...-..++|.+++..+..... ++++.+.|-.+.+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45667899999985555554 59999999765555443333335678999999988877776 688999999999988
Q ss_pred eeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 112 CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 112 ~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
....-...-..++++|++..+++.. .++.|.+.+... ..+.. +... ...........+.+.| +|
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~~v~~-~~~~----------~~~~~~~~P~~i~v~~--~g 218 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG--NSVVR-GSVG----------SLVGVGTGPAGIAVDP--DG 218 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC--cceec-cccc----------cccccCCCCceEEECC--CC
Confidence 8853332238999999999888887 577777766432 22221 0000 0001114456777866 67
Q ss_pred CEEEEEEcC---CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 191 NRVLIAYEN---ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 191 ~~ll~~~~d---g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
.++.+.... +.+...|..++.+...... .+. . ....+.. +|+|..+.+
T Consensus 219 ~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-------------~~~--------------~-~~~~v~~-~p~g~~~yv 269 (381)
T COG3391 219 NRVYVANDGSGSNNVLKIDTATGNVTATDLP-------------VGS--------------G-APRGVAV-DPAGKAAYV 269 (381)
T ss_pred CEEEEEeccCCCceEEEEeCCCceEEEeccc-------------ccc--------------C-CCCceeE-CCCCCEEEE
Confidence 755554444 4888888888776554111 000 1 1223343 599999888
Q ss_pred EEcC-CcEEEEecCCC
Q 001321 268 GYID-GDILLWNTSTT 282 (1100)
Q Consensus 268 g~~D-G~I~lWd~~~~ 282 (1100)
.... +.+.+-|..+.
T Consensus 270 ~~~~~~~V~vid~~~~ 285 (381)
T COG3391 270 ANSQGGTVSVIDGATD 285 (381)
T ss_pred EecCCCeEEEEeCCCC
Confidence 8555 77777776654
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.52 E-value=2.1 Score=47.34 Aligned_cols=204 Identities=12% Similarity=0.067 Sum_probs=115.1
Q ss_pred EEEEcCCCCEEEEEECC--CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC-CCceeeee--
Q 001321 40 ILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCL-- 114 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~d--G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~-s~~~l~~~-- 114 (1100)
.++++.+++++.+.--. ..|-|-|+....++.+.+-.+.+-..-. .+ ..+.+.|.||.+.-..+. .|+.....
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence 46888888888776443 5788888888777766666554333322 23 347899999999999987 45443222
Q ss_pred -ecC--CCe-EEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 115 -KWE--SNI-TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 115 -~~~--~~V-t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.+. .++ ..=++...+.+++.-+-+|.|+-.++..+.-++.. ++.+....-.+ ..-+++...-+++|+. .
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~----~~WrPGG~Q~~A~~~~--~ 249 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKA----DGWRPGGWQLIAYHAA--S 249 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHH----TTEEE-SSS-EEEETT--T
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccc----cCcCCcceeeeeeccc--c
Confidence 222 112 23344555666666788897766666554323332 23332111000 0112245556777763 3
Q ss_pred CEEEEEEcCC----------EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 191 NRVLIAYENA----------LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 191 ~~ll~~~~dg----------~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
++|++--..| .|-++|+.+++.+....- ...+.++.-. .
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l------------------------------~~~~~Si~Vs-q 298 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL------------------------------EHPIDSIAVS-Q 298 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE------------------------------EEEESEEEEE-S
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC------------------------------CCccceEEEc-c
Confidence 3455433222 677788888877655422 3456677644 5
Q ss_pred CCC-EEEEEE-cCCcEEEEecCCCC
Q 001321 261 SGS-ILAVGY-IDGDILLWNTSTTA 283 (1100)
Q Consensus 261 dg~-~l~sg~-~DG~I~lWd~~~~~ 283 (1100)
+.+ +|++.. .++.|.+||..+++
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 554 555554 47899999999884
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.46 E-value=0.23 Score=58.02 Aligned_cols=142 Identities=13% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEE-EEecCCCee
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVI-KYDADEGKL 153 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw-~~d~~~~~l 153 (1100)
.....+.|.++|+|++++. +.+|.-.++.....+-. ..+.-..++|.+ ....|+-..+..|.|+ +++....+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k----~~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK----AFGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE----EEEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc----ccCceeEEEEec-CccEEEEECCCeEEEEEcCccccceE
Confidence 3446889999999887777 55777777663222221 124456788888 4446666668888885 343221111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g 233 (1100)
.+ ++ ..+..|-. |. ++....++.|.+||+.+++++.....
T Consensus 105 i~----~~---------------~~~~~If~-----G~-LL~~~~~~~i~~yDw~~~~~i~~i~v--------------- 144 (443)
T PF04053_consen 105 IK----LP---------------FSVEKIFG-----GN-LLGVKSSDFICFYDWETGKLIRRIDV--------------- 144 (443)
T ss_dssp -------S---------------S-EEEEE------SS-SEEEEETTEEEEE-TTT--EEEEESS---------------
T ss_pred Ec----CC---------------cccceEEc-----Cc-EEEEECCCCEEEEEhhHcceeeEEec---------------
Confidence 11 21 12334433 55 66666666889999999998877643
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
. .|..+.|. ++|.+++-.+.+ ++.+++..
T Consensus 145 ---------------~-~vk~V~Ws-~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 145 ---------------S-AVKYVIWS-DDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp -----------------E-EEEEE--TTSSEEEEE-S--SEEEEEE-
T ss_pred ---------------C-CCcEEEEE-CCCCEEEEEeCC-eEEEEEec
Confidence 2 38899996 999998888765 57777654
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=3.2 Score=48.06 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=126.1
Q ss_pred CeEEEEEcCCCCEEEEEECC-CeEEEEeCCCceEEEeCCCC-CCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceeee
Q 001321 37 TASILAFDHIQRLLAIATLD-GRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~d-G~I~vw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~~ 113 (1100)
.+.-++++|++.-+.+.... ..+.+.+...........-. ..-..+.+++.+..+.... .++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 56678899988555544432 34555554421111111111 2345677778777665555 468999999999998888
Q ss_pred eecCCCeEEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 114 LKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 114 ~~~~~~Vt~~~~s~~~~~l~~G~~d-G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
.........++++++++.++++... +.-.++.++...+++... ++... .+ ..+++.| +|++
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~---~~vG~------------~P-~~~a~~p--~g~~ 173 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT---IPVGN------------TP-TGVAVDP--DGNK 173 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---EecCC------------Cc-ceEEECC--CCCe
Confidence 8666678899999999999999884 344567788777777743 33211 23 8889977 6775
Q ss_pred EEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC
Q 001321 193 VLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1100)
Q Consensus 193 ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D 271 (1100)
++... .++.|.+.|..+..+.. ....... .. ...-..+.+ .|+|.++++....
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~-------------~~----------~~~P~~i~v-~~~g~~~yV~~~~ 227 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVR--GSVGSLV-------------GV----------GTGPAGIAV-DPDGNRVYVANDG 227 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceec--ccccccc-------------cc----------CCCCceEEE-CCCCCEEEEEecc
Confidence 55555 78899999977766553 1100000 00 112223444 4899877666544
Q ss_pred ---CcEEEEecCCC
Q 001321 272 ---GDILLWNTSTT 282 (1100)
Q Consensus 272 ---G~I~lWd~~~~ 282 (1100)
+.+..-|..++
T Consensus 228 ~~~~~v~~id~~~~ 241 (381)
T COG3391 228 SGSNNVLKIDTATG 241 (381)
T ss_pred CCCceEEEEeCCCc
Confidence 47777777655
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=3.6 Score=44.12 Aligned_cols=180 Identities=13% Similarity=0.129 Sum_probs=117.2
Q ss_pred ccceeeee--cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCC--CEEEEEEEeCCCEEEEEECCCc
Q 001321 24 LNLRIAVH--YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 24 ~~~~~~~~--~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~--~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
+..+.... -|....+++++|+|+.+.|.+-+..+.-.||=-...+++...+-.+ .-..+.+..++++.++==.++.
T Consensus 72 y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 72 YRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred ceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcce
Confidence 44444455 7888899999999999999999988877777655555554433322 3456777778777666666777
Q ss_pred EEEEEcCCCceee-----ee-----ec-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 100 IQVWSLESRSLAC-----CL-----KW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 100 I~vWd~~s~~~l~-----~~-----~~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
+.+..+.....+. .+ .. +...-.++++|....+++.-+..-+.|+.+......+....-..+ ...+.
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~--~~~~~ 229 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP--TADRD 229 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc--ccccc
Confidence 7777765542111 11 11 234668999999999999998888888887743322221100011 00000
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ 211 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~ 211 (1100)
--...|.++.|++. .+..++-+-+++.+.-.|....-
T Consensus 230 -----~f~~DvSgl~~~~~-~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 230 -----LFVLDVSGLEFNAI-TNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred -----eEeeccccceecCC-CCcEEEEecCCceEEEEecCCCe
Confidence 01256889999886 45557777888888888877664
No 371
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.26 E-value=0.0049 Score=70.81 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=107.5
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEeCCCc------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEE
Q 001321 33 GIPATASILAFDH-IQRLLAIAT----LDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1100)
Q Consensus 33 G~~~~v~~la~sp-~~~lLA~gs----~dG~I~vw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~ 101 (1100)
|+-..-+++||++ |.+.||.|- .|..+.|||.... ...+..+.......++|..+.+.|+++.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 4455678999998 457888884 3478999998543 2223333444667899999988999999999999
Q ss_pred EEEcCCCceeeeeecCCCeEEEEEec-CCCEEEEEeCCCcEEEEE-EecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 102 VWSLESRSLACCLKWESNITAFSVIS-GSHFMYIGDENGLMSVIK-YDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 102 vWd~~s~~~l~~~~~~~~Vt~~~~s~-~~~~l~~G~~dG~V~Iw~-~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
++|++.............+..+.++| ..+|++.-. +|.|-+|| +..-+.-+.. +. ..+......+
T Consensus 180 ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~----i~--------~~~N~~~~~l 246 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI----IL--------RNENKKPKQL 246 (783)
T ss_pred hhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH----Hh--------hCCCCcccce
Confidence 99987443322223334567788898 667766555 99999999 3211111111 11 1111223569
Q ss_pred EEEEeccCCCCCEEEEEEc-CCEEEEEEccC
Q 001321 180 VGVLPHPNSSGNRVLIAYE-NALVILWDVSE 209 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~ 209 (1100)
..++|.|+..|. +++... .++|+++|+..
T Consensus 247 ~~~aycPtrtgl-la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 247 FALAYCPTRTGL-LAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeEEeccCCcch-hhhhccCcceEEEecccc
Confidence 999999998887 555555 46899999865
No 372
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.25 E-value=9.5 Score=45.81 Aligned_cols=113 Identities=13% Similarity=0.151 Sum_probs=63.5
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCC-------eEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceee
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESN-------ITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNI 160 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~-------Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i 160 (1100)
+.+..++.++.|.-.|..+++.+..+..... +..--..-.+ ..+++++.+|.|.. +|..+++..-. +..
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~A--lD~~TG~~~W~-~~~ 138 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVA--LDAETGKQVWK-FGN 138 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEE--EECCCCCEeee-ecC
Confidence 5677788889999999999988876643321 1000001123 78899999997755 45555666521 222
Q ss_pred cccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE---------cCCEEEEEEccCCEEEEEe
Q 001321 161 SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY---------ENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~---------~dg~V~lwdl~~~~~~~~~ 216 (1100)
..+. ..-..+.-.|.-.+.++++++ .+|.|.-+|..+++.+-.+
T Consensus 139 ~~~~------------~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 139 NDQV------------PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCCc------------CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 2110 000111222221223455554 3678889999999876544
No 373
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.19 E-value=4.3 Score=44.00 Aligned_cols=149 Identities=12% Similarity=0.017 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEE-cCCCceee
Q 001321 37 TASILAFDHIQRLLAIAT---LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS-LESRSLAC 112 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs---~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd-~~s~~~l~ 112 (1100)
.+...|.+++++.+|.-+ ....++++...+....... ...++.-.|.+++...+....+...+++. ..++....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999888776 3356667666544433332 23788889999965555555566666663 33443222
Q ss_pred -eeecC---CCeEEEEEecCCCEEEEEe---CCCcEEEEEEecCCCe---eeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 113 -CLKWE---SNITAFSVISGSHFMYIGD---ENGLMSVIKYDADEGK---LFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 113 -~~~~~---~~Vt~~~~s~~~~~l~~G~---~dG~V~Iw~~d~~~~~---l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
..... +.|+++.++|++.+++.-. .++.|.|-.+..+... ....+..+.. .....++.+
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-----------~~~~~v~~v 171 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-----------PLLSDVTDV 171 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-----------cccCcceee
Confidence 22222 2899999999999887665 3566666555443322 1111122221 112689999
Q ss_pred EeccCCCCCEEEEEEcCC
Q 001321 183 LPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg 200 (1100)
.|.+ ++++++.+...+
T Consensus 172 ~W~~--~~~L~V~~~~~~ 187 (253)
T PF10647_consen 172 AWSD--DSTLVVLGRSAG 187 (253)
T ss_pred eecC--CCEEEEEeCCCC
Confidence 9955 666444444444
No 374
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.02 E-value=7.3 Score=43.24 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=41.2
Q ss_pred eEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEe-cceeEEEEeCCCCcc
Q 001321 626 RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISIVGGSSENM 704 (1100)
Q Consensus 626 ~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt-~dg~v~v~d~~~g~~ 704 (1100)
.|+++|+.+.+.+..... ..++.+|+.+... .++|+..+ .++.+.+||..+|++
T Consensus 270 eVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~---------------------~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL----EHPIDSIAVSQDD---------------------KPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTTTEEEEEEEE----EEEESEEEEESSS---------------------S-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEEECCCCeEEEEEeC----CCccceEEEccCC---------------------CcEEEEEcCCCCeEEEEeCcCCcE
Confidence 689999999999866554 3457788888432 45676654 589999999999987
Q ss_pred ccCC
Q 001321 705 ISSS 708 (1100)
Q Consensus 705 l~~~ 708 (1100)
+.+-
T Consensus 325 ~~~~ 328 (342)
T PF06433_consen 325 VRSI 328 (342)
T ss_dssp EEEE
T ss_pred Eeeh
Confidence 7553
No 375
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.00 E-value=0.036 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=29.8
Q ss_pred ecCCCCCeeEEEEeeCCCeEEEEecCceEEEEE
Q 001321 532 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYN 564 (1100)
Q Consensus 532 l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~ 564 (1100)
+..|...|+++.|.+++..+++++.||.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778999999999999999999999999995
No 376
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=0.03 Score=66.57 Aligned_cols=123 Identities=11% Similarity=0.053 Sum_probs=89.6
Q ss_pred ecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEE
Q 001321 532 VAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1100)
Q Consensus 532 l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLaf 611 (1100)
+..|....||++|+.+.++|++|+..|.|++|+..++..+ .....|+++||-+.=
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-------------------------~s~ncH~SavT~veP 1151 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-------------------------ESVNCHQSAVTLVEP 1151 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-------------------------ccccccccccccccc
Confidence 4567789999999999999999999999999999987433 445789999999999
Q ss_pred cCCCCEEEEEeC-Cc-eEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEe
Q 001321 612 TSSGAKLAVGFE-CG-RVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF 689 (1100)
Q Consensus 612 Sp~g~~LavGs~-dG-~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt 689 (1100)
|-||..+.+.+. .. ...+|++.. ..-..|.+ ..-.++.|+..... =+.||
T Consensus 1152 s~dgs~~Ltsss~S~PlsaLW~~~s--~~~~~Hsf----~ed~~vkFsn~~q~----------------------r~~gt 1203 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASS--TGGPRHSF----DEDKAVKFSNSLQF----------------------RALGT 1203 (1516)
T ss_pred cCCcceeeeeccccCchHHHhcccc--ccCccccc----cccceeehhhhHHH----------------------HHhcc
Confidence 999976665433 22 578899875 22111221 23346677633222 45677
Q ss_pred cceeEEEEeCCCCccccC
Q 001321 690 KDAKISIVGGSSENMISS 707 (1100)
Q Consensus 690 ~dg~v~v~d~~~g~~l~~ 707 (1100)
..-.+.+||..|+..+.+
T Consensus 1204 ~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1204 EADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccceEEEecccCcHHHH
Confidence 777889999998887655
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.71 E-value=2.2 Score=47.43 Aligned_cols=196 Identities=11% Similarity=0.058 Sum_probs=102.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--Cc-eEEEeCCCC---CCEEEEEEEeCCCEEEEEEC-----C--
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD--GI-EGLLISPSQ---LPYKNLEFLQNQGFLISITN-----D-- 97 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~--~~-~~~~~~~h~---~~V~~l~fs~d~~~Lls~s~-----d-- 97 (1100)
-+-.|+.++++..-..+.+|+++... +++++.+ .. ..+...... ..-..+...|+|.+-+.-.. .
T Consensus 61 ~~~~p~~~~~~~~~d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~ 138 (307)
T COG3386 61 VFPSPGGFSSGALIDAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE 138 (307)
T ss_pred EEECCCCcccceeecCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence 34456676665554455555554433 4444543 22 222222222 24567778888766665444 0
Q ss_pred --CcEEEEEcC-CCceeeeeec-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC--CeeeeeceeecccccccccCC
Q 001321 98 --NEIQVWSLE-SRSLACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADE--GKLFQLPYNISADALSEKAGF 171 (1100)
Q Consensus 98 --~~I~vWd~~-s~~~l~~~~~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~--~~l~~~~~~i~~~~~~~~~~~ 171 (1100)
..=.||-+. .+........ -..-+.++|+|+++.|++.+.... +||.++.+. +.... .......
T Consensus 139 ~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~-~i~r~~~d~~~g~~~~---------~~~~~~~ 208 (307)
T COG3386 139 ERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN-RIHRYDLDPATGPIGG---------RRGFVDF 208 (307)
T ss_pred cCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC-eEEEEecCcccCccCC---------cceEEEc
Confidence 111344444 3444433322 344568999999999999987532 445554321 11110 0000000
Q ss_pred CCCCCCCeEEEEeccCCCCCEEEEEEcCC-EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 172 ~~~~~~~V~sv~f~P~~~g~~ll~~~~dg-~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
. ...+..=.++. ..+|.+.+++..+| .|..|+-+ ++.+... .++ ..
T Consensus 209 ~-~~~G~PDG~~v--DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i---------~lP--------------------~~ 255 (307)
T COG3386 209 D-EEPGLPDGMAV--DADGNLWVAAVWGGGRVVRFNPD-GKLLGEI---------KLP--------------------VK 255 (307)
T ss_pred c-CCCCCCCceEE--eCCCCEEEecccCCceEEEECCC-CcEEEEE---------ECC--------------------CC
Confidence 0 01133334444 45787333555554 88889888 5554433 222 47
Q ss_pred ceEEEEEecCCCCEEEEEEcC
Q 001321 251 EISALCWASSSGSILAVGYID 271 (1100)
Q Consensus 251 ~V~sl~w~spdg~~l~sg~~D 271 (1100)
.++++||-.|+.+.|+..+..
T Consensus 256 ~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCccceEeCCCcCEEEEEecC
Confidence 788999887777766665543
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.64 E-value=0.09 Score=40.06 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=30.6
Q ss_pred ecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 601 ~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
....+|+.++|+|...+||+|+.+|.|.|+.+...
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 34567999999999999999999999999999543
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=1.1 Score=51.23 Aligned_cols=201 Identities=13% Similarity=0.117 Sum_probs=121.2
Q ss_pred CCCeEEEEEc-CCCCEEEEEEC------CCeEEEEeC-CCceEEEeCC-------CC-CCEEEEEEEeCCCE-EEEEECC
Q 001321 35 PATASILAFD-HIQRLLAIATL------DGRIKVIGG-DGIEGLLISP-------SQ-LPYKNLEFLQNQGF-LISITND 97 (1100)
Q Consensus 35 ~~~v~~la~s-p~~~lLA~gs~------dG~I~vw~~-~~~~~~~~~~-------h~-~~V~~l~fs~d~~~-Lls~s~d 97 (1100)
.+.|..+++. -+.++|++|.. +.+|-||.- ++.++.+... |. .|-+.|-...+... |.++...
T Consensus 276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~ 355 (644)
T KOG2395|consen 276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQ 355 (644)
T ss_pred hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCc
Confidence 4456666665 45678888865 344555543 3334333222 11 23334444444443 4455566
Q ss_pred CcEEEEEcCCCceeeeeecCCCeEEEEEecCCC-------EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~-------~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
+.|.-.|++.|+++........|+.+.+.|+.+ .-++|.++..|.-|+.......... ...++.....
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~---~~q~kqy~~k-- 430 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA---VVQSKQYSTK-- 430 (644)
T ss_pred CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceee---eeeccccccc--
Confidence 789999999999999998888899999998864 3468888888877776644331110 1222221111
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
....|.+- +.+|. +++|+.+|-|++||-...+....+. +. ..
T Consensus 431 ------~nFsc~aT--T~sG~-IvvgS~~GdIRLYdri~~~AKTAlP-------------------gL----------G~ 472 (644)
T KOG2395|consen 431 ------NNFSCFAT--TESGY-IVVGSLKGDIRLYDRIGRRAKTALP-------------------GL----------GD 472 (644)
T ss_pred ------cccceeee--cCCce-EEEeecCCcEEeehhhhhhhhhccc-------------------cc----------CC
Confidence 23445444 54675 9999999999999973333322211 00 34
Q ss_pred ceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 251 EISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 251 ~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+|.-+.- +.+|++|++.|. .+|.+-+..
T Consensus 473 ~I~hVdv-tadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 473 AIKHVDV-TADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred ceeeEEe-eccCcEEEEecc-cEEEEEEEe
Confidence 5666663 589999888774 567776653
No 380
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=0.55 Score=58.24 Aligned_cols=150 Identities=13% Similarity=0.069 Sum_probs=94.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCce------------------EEEeCCCCCCEEEEEEEeCCCEEEEEECCC--c
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIE------------------GLLISPSQLPYKNLEFLQNQGFLISITNDN--E 99 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~------------------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~--~ 99 (1100)
.++.++.-.++.++...+.+.|++..+.. +.+..+...+|..+...+|+...++..+.+ .
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 46777777777777777777777543221 123334455788888888877766666555 7
Q ss_pred EEEEEcCCCc--------eeeee----ecCCCeEEEEEecCCCE-EEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001321 100 IQVWSLESRS--------LACCL----KWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1100)
Q Consensus 100 I~vWd~~s~~--------~l~~~----~~~~~Vt~~~~s~~~~~-l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~ 166 (1100)
|.++|+++-. +++.. ....-..++.|+|.-.. .++...|+.|+|..+........ .++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~----s~p----- 196 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT----SFP----- 196 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc----ccC-----
Confidence 8999986431 22111 22245778888887654 45666788887766543111111 011
Q ss_pred cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 167 ~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
-...+++++|+| .|+.+++|..+|+++-|--.
T Consensus 197 --------~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 197 --------VTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred --------cccceeeEEecc--ccceeeEecCCCeEEEeecc
Confidence 015689999988 58889999999998776543
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.25 E-value=9.8 Score=44.62 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=78.9
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEEC-CC----eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATL-DG----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~-dG----~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d 97 (1100)
.||+.....-+-...+..+++||++++||.+-. +| .|+++|+...+.+...-.......+.|.+|+..++....+
T Consensus 111 llD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~ 190 (414)
T PF02897_consen 111 LLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFD 190 (414)
T ss_dssp EEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECS
T ss_pred EEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeC
Confidence 567666554332334457899999999998843 34 6999999776555322111122349999998877776543
Q ss_pred C-----------cEEEEEcCCCcee--eee--ecCCC-eEEEEEecCCCEEEEEeCCCc--EEEEEEecCC
Q 001321 98 N-----------EIQVWSLESRSLA--CCL--KWESN-ITAFSVISGSHFMYIGDENGL--MSVIKYDADE 150 (1100)
Q Consensus 98 ~-----------~I~vWd~~s~~~l--~~~--~~~~~-Vt~~~~s~~~~~l~~G~~dG~--V~Iw~~d~~~ 150 (1100)
. .|..|.+.+..-- ..+ ..+.- ...+..+++++++++....+. -.+|-++...
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3 3788888776432 222 22223 668888999999887665443 3566666544
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.18 E-value=1.9 Score=52.54 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=97.0
Q ss_pred CCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEE------CCC--cEEEEEcCCCceeeeeecCCCeEEEEEe
Q 001321 56 DGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISIT------NDN--EIQVWSLESRSLACCLKWESNITAFSVI 126 (1100)
Q Consensus 56 dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s------~d~--~I~vWd~~s~~~l~~~~~~~~Vt~~~~s 126 (1100)
+|.+.-.+..+.+.+ -..+....+...+++|||.+++..- .|. .|.+++... .. ..+......++-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceEC
Confidence 777766554443322 1112234688999999999888776 243 455555422 22 222223348899999
Q ss_pred cCCCEEEEEeCCCc-EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEE
Q 001321 127 SGSHFMYIGDENGL-MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1100)
Q Consensus 127 ~~~~~l~~G~~dG~-V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lw 205 (1100)
|++.++++...... +++...+ ..+.+.. ..+.+.+... .-.+.|..+.|+| +|++++... +|.|.+=
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~-~~gql~~--~~vd~ge~~~------~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDP-ATGQLAR--TPVDASAVAS------RVPGPISELQLSR--DGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceEEEecCcceEEEeccC-CCceEEE--EeccCchhhh------ccCCCcCeEEECC--CCCEEEEEE-CCEEEEE
Confidence 99988887754322 2222211 1222221 1122211111 1125799999988 899888766 3555442
Q ss_pred ---EccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 206 ---DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 206 ---dl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.-..+. ... ... . .+. ..-...+.++.|. .++. |+++..++.-.+|.+.
T Consensus 474 ~Vvr~~~G~-~~l-~~~-~----~l~-----------------~~l~~~~~~l~W~-~~~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 474 VVEQTEDGQ-YAL-TNP-R----EVG-----------------PGLGDTAVSLDWR-TGDS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred EEEeCCCCc-eee-ccc-E----Eee-----------------cccCCccccceEe-cCCE-EEEEecCCCCceEEEe
Confidence 222232 111 000 0 000 0002335778997 7776 5677776666677654
No 383
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.92 E-value=16 Score=42.44 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCEEEEEECCCeEEEEeCCCc-----eEEEeCCCCCCEEEEEEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFL 85 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~-----~~~~~~~h~~~V~~l~fs 85 (1100)
...+++|+..|.+|||..... .++++..-+.||-.|+.-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G 80 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECG 80 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEec
Confidence 358999999999999987332 366777777898888764
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.87 E-value=4.4 Score=43.87 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=70.2
Q ss_pred CEEEEEEEeCCCEEEEEE---CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 78 PYKNLEFLQNQGFLISIT---NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s---~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
.+...++++++..++.+. ....+.++..... .........++.-+|++++...++...+...+++.... .+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~-~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA-SGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecC-CCcce
Confidence 689999999999888877 3344666654433 22222344788889999977777777666666665221 22222
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc---CCEEEEEEc
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE---NALVILWDV 207 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~---dg~V~lwdl 207 (1100)
. ..+..... ...|.++.++| +|.+++.... ++.|.+--+
T Consensus 102 ~--~~v~~~~~----------~~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 P--VEVDWPGL----------RGRITALRVSP--DGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred e--EEeccccc----------CCceEEEEECC--CCcEEEEEEecCCCCeEEEEEE
Confidence 1 12322110 02799999988 8999988773 345554443
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.76 E-value=0.2 Score=51.35 Aligned_cols=109 Identities=10% Similarity=0.194 Sum_probs=68.3
Q ss_pred EEEEECCCcEEEEEcCCCceeeeeecCCCeEE-EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001321 91 LISITNDNEIQVWSLESRSLACCLKWESNITA-FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 91 Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~-~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
|..-++++.|+-.++...+.-.... .-+.+ +.+-....-+++|..+|.|.+|++.... .+... +..-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g-~~~d~---~~s~------ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSE--RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEG-AHSDR---VCSG------ 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhh--hhhhcceeecccCceEEeecccceEEEecCCccc-hHHHh---hhcc------
Confidence 5556678888888877665433221 01111 3333456789999999999999987422 11110 1110
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecC
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~ 218 (1100)
..+|.++-.. .+++.+.+++..+|.|+.|++.-++.+.+.++
T Consensus 101 ------~e~i~~~Ip~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 101 ------EESIDLGIPN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ------cccceecccc-ccccceeEEeccCCceeeeccccCceeeeecc
Confidence 1344444432 23556789999999999999999888877765
No 386
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.74 E-value=12 Score=40.56 Aligned_cols=119 Identities=16% Similarity=0.289 Sum_probs=76.7
Q ss_pred ccccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-----Cc--eEEEeCC------CCCCEEEEEEEe
Q 001321 20 TAADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-----GI--EGLLISP------SQLPYKNLEFLQ 86 (1100)
Q Consensus 20 ~~~~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-----~~--~~~~~~~------h~~~V~~l~fs~ 86 (1100)
.+...|+.+++-.| |+|+|.+.+.++....|...+|+.. +. .++...+ ..+..+.+.|..
T Consensus 14 ~A~~tDp~L~N~WG-------ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 14 AAQIVDPGLRNAWG-------LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG 86 (336)
T ss_pred cccccCccccccce-------eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC
Confidence 46678888888888 8999999988888888999999986 22 2222211 234567777775
Q ss_pred CCCE------------EEEEECCCcEEEEEcCCCce---e--eee--ecCCCe---EEEEEecCCCEEEEEe-CCCcEEE
Q 001321 87 NQGF------------LISITNDNEIQVWSLESRSL---A--CCL--KWESNI---TAFSVISGSHFMYIGD-ENGLMSV 143 (1100)
Q Consensus 87 d~~~------------Lls~s~d~~I~vWd~~s~~~---l--~~~--~~~~~V---t~~~~s~~~~~l~~G~-~dG~V~I 143 (1100)
...+ .+-++.||+|.-|.-.-... . ..+ ...+.| .+++....+++|+... .++.|.|
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEE
Confidence 4333 57778899999998533222 0 111 112222 3444445567777665 5788877
Q ss_pred EE
Q 001321 144 IK 145 (1100)
Q Consensus 144 w~ 145 (1100)
+|
T Consensus 167 Fd 168 (336)
T TIGR03118 167 FK 168 (336)
T ss_pred ec
Confidence 65
No 387
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.22 E-value=1 Score=53.86 Aligned_cols=92 Identities=7% Similarity=-0.040 Sum_probs=63.4
Q ss_pred CeEEEEeCCC-----ceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCce------------eeeeecCC
Q 001321 57 GRIKVIGGDG-----IEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL------------ACCLKWES 118 (1100)
Q Consensus 57 G~I~vw~~~~-----~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~------------l~~~~~~~ 118 (1100)
+.|.|+|... ..++...+-......+.++|||++++..+. +++|.|.|+++.+. .......-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 4466666644 344444444445677899999999988775 89999999988652 33333333
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 119 NITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 119 ~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
.-...+|++++....+-.-|..|-.|+++.
T Consensus 376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 456778888887555556788888899874
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.21 E-value=0.24 Score=50.70 Aligned_cols=101 Identities=11% Similarity=0.104 Sum_probs=68.8
Q ss_pred CCEEEEEECCCeEEEEeCCCce---EEEeCCCCCCEEEE-EEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecC-CCe
Q 001321 47 QRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNL-EFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWE-SNI 120 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~---~~~~~~h~~~V~~l-~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~-~~V 120 (1100)
..-|++|+.+|.|++|.....- -..... ..+|.++ .-..++.+..+++.++.|+-|++.-.+.+... +|. ..+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 4678999999999999875211 111111 1122222 22234456777888999999999998888776 455 567
Q ss_pred EEEEEecCCCEEEEE--eCCCcEEEEEEec
Q 001321 121 TAFSVISGSHFMYIG--DENGLMSVIKYDA 148 (1100)
Q Consensus 121 t~~~~s~~~~~l~~G--~~dG~V~Iw~~d~ 148 (1100)
..+.++..++++++. +.+..++.|+++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhh
Confidence 777777777888777 7777788888764
No 389
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.11 E-value=4.2 Score=38.48 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCc--------eEEEeCCCCCCEEEEEEEe----CCCEEEEEECCCcEEEEEc
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQ----NQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--------~~~~~~~h~~~V~~l~fs~----d~~~Lls~s~d~~I~vWd~ 105 (1100)
|+.-.|+....-||.++..|.|.|++.... ..+..+.-...|++|+-.+ ++.-++-+++..+|..||+
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 345678988899999999999999986422 1222333344677776544 3344666777899999999
Q ss_pred CCCceeeeeecCCCeEEEEEec----CCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 106 ESRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~----~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
+...-+-....+..|.++.+-. ...++++| |...|+-||.+...+
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG---Gncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG---GNCSIQGFDYEGNEI 129 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEEC---ceEEEEEeCCCCcEE
Confidence 8876554445556678877753 23456665 334556666544443
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=3 Score=44.23 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=39.8
Q ss_pred EEcCCCCEEEEEECC-----CeEEEEeCCC-ceEE-EeCCCCCCEEEEEEEeCCCEEEEEE
Q 001321 42 AFDHIQRLLAIATLD-----GRIKVIGGDG-IEGL-LISPSQLPYKNLEFLQNQGFLISIT 95 (1100)
Q Consensus 42 a~sp~~~lLA~gs~d-----G~I~vw~~~~-~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s 95 (1100)
.|||||++|..--.| |.|-|||.+. .+.+ ....|.-.--.|.+.+||..|+.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999998765544 8999999852 2333 4456776777889999988777664
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.50 E-value=1.2 Score=51.35 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=62.7
Q ss_pred EEEEeeCCCeEEEEecCceEEE-EEecC--CC-CCcceeeeccCCCceeeccCCCcceeEEEEeecC-cCeEEEEEc---
Q 001321 541 TLSFCFINSSLAVGNEFGLVYI-YNLNG--SL-DAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN-SPVRALQFT--- 612 (1100)
Q Consensus 541 ~lafspd~~~Lasg~~dG~V~l-w~l~~--~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~-~~VtsLafS--- 612 (1100)
.++.+|++..||.|..+..|.+ ..+.. .. .+...... +...+.... ..||++.+-
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~-----------------~~g~l~~~~~e~ITsi~clpl~ 68 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSIS-----------------WSGPLDDEPGECITSILCLPLS 68 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEE-----------------eeeeccCCCCCEEEEEEEEEee
Confidence 4688999999999988877766 34422 21 11111100 001111111 456666553
Q ss_pred --------CCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeeccc
Q 001321 613 --------SSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKN 661 (1100)
Q Consensus 613 --------p~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~ 661 (1100)
+|...+++|+.+|.|++|... +.+++.... |.++|..|.+..+..
T Consensus 69 s~~~s~~~~dw~~I~VG~ssG~vrfyte~-G~LL~~Q~~---h~~pV~~ik~~~~~~ 121 (415)
T PF14655_consen 69 SQKRSTGGPDWTCIAVGTSSGYVRFYTEN-GVLLLSQLL---HEEPVLKIKCRSTKI 121 (415)
T ss_pred cccccCCCCCcEEEEEEecccEEEEEecc-chHHHHHhc---CccceEEEEecccCC
Confidence 346799999999999999996 445543333 999999999985443
No 392
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.44 E-value=11 Score=45.35 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCC-------CEE--EEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQL-------PYK--NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE 117 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~-------~V~--~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~ 117 (1100)
+..+.+++.+|.|+-+|....+.+-...-.. ++. .+.+. ++..++.++.++.|..+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 4567778888999999986555442221111 111 11111 2267888888999999999999999887554
Q ss_pred CC------eE-EEEEecCCCEEEEEeC---------CCcEEEEEEecCCCeee
Q 001321 118 SN------IT-AFSVISGSHFMYIGDE---------NGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 118 ~~------Vt-~~~~s~~~~~l~~G~~---------dG~V~Iw~~d~~~~~l~ 154 (1100)
.. +. +..+. ...+++|+. +| .++-+|..+++..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g--~v~alD~~TG~~~ 188 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRG--ALRAYDVETGKLL 188 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCc--EEEEEECCCCcee
Confidence 33 11 11222 356677754 35 4466777777766
No 393
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.32 E-value=11 Score=44.18 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCC---CCE-----EEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ---LPY-----KNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~---~~V-----~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
+.+.++.|+.+..++ +-..||.+++|+..+.. .+..+.. ..| -+..|..+| ++....++.+.+-+-..
T Consensus 81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence 688899998876655 55579999999986555 2222221 122 223444465 44444555554443322
Q ss_pred Ccee-eee-ecCCCeEE----------EEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 108 RSLA-CCL-KWESNITA----------FSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 108 ~~~l-~~~-~~~~~Vt~----------~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.... ..+ ..+...+. ..++.+....+....++.+.+.+-.. .. .+. .
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~----~~----~i~-------------~ 215 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS----FK----QID-------------S 215 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc----cc----ccc-------------C
Confidence 2211 111 11111111 12222333333333333332211110 00 011 1
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~ 215 (1100)
.+++..|+.+| +|++++.-..+|.+.+.+-+-.+....
T Consensus 216 ~~~i~~iavSp--ng~~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 216 DGPIIKIAVSP--NGKFIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred CCCeEEEEECC--CCCEEEEEECCCCEEEEECcccceeEE
Confidence 26899999988 688788888889887776555554443
No 394
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.13 E-value=17 Score=41.15 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=74.5
Q ss_pred EEcCCCCEEEEEEC-CC--eEEEEeCCCceEEEeCCCCCC-EEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC
Q 001321 42 AFDHIQRLLAIATL-DG--RIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE 117 (1100)
Q Consensus 42 a~sp~~~lLA~gs~-dG--~I~vw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~ 117 (1100)
+|.++|+.|..++. || .+++-|+...+..-+..+.+. .-....+++...|+-+..+..|+-.|+++++....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46788865555544 55 555567777777655554432 224566788888888888889999999999876666444
Q ss_pred C-CeEEEEEe--cCCCEEEEEeC----C-----------------CcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001321 118 S-NITAFSVI--SGSHFMYIGDE----N-----------------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1100)
Q Consensus 118 ~-~Vt~~~~s--~~~~~l~~G~~----d-----------------G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1100)
. -+....+. .++.. ++|.+ + -..+|..++..+|..... +. .
T Consensus 122 ~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v---~~-~---------- 186 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV---FE-D---------- 186 (386)
T ss_dssp TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE---EE-E----------
T ss_pred cccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE---Ee-c----------
Confidence 3 33334443 33333 33321 1 122344444444443321 11 1
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCC-----EEEEEEccCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEA 210 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg-----~V~lwdl~~~ 210 (1100)
...+-.+.|+|.+.+ ++.=|..| .-|||-+.+.
T Consensus 187 --~~wlgH~~fsP~dp~--li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 187 --TDWLGHVQFSPTDPT--LIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp --SS-EEEEEEETTEEE--EEEEEE-S-TTTSS-SEEEEETT
T ss_pred --CccccCcccCCCCCC--EEEEeccCCcceeceEEEEEEcC
Confidence 156789999998544 44444444 2378877654
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.80 E-value=37 Score=41.14 Aligned_cols=113 Identities=11% Similarity=0.167 Sum_probs=66.4
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCC--CeE---EEEE-----ecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWES--NIT---AFSV-----ISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~--~Vt---~~~~-----s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~ 157 (1100)
+++|+.++.++.|.-.|..+++.+..+.... .+. ++.+ .-.+..+++++.+|.+ +-+|..+|++.-
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l--~ALDa~TGk~~W-- 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARL--VALDAKTGKVVW-- 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEE--EEEECCCCCEEe--
Confidence 3577778888999999999999887774432 121 1111 1124578888888854 667777777763
Q ss_pred eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
+...... ..-..+.-.|.-.+.+++++.. +|.|.-+|..+++.+-.+
T Consensus 145 -~~~~~~~-----------~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 145 -SKKNGDY-----------KAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred -ecccccc-----------cccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 2221100 0000111122111234666653 688999999999876543
No 396
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.60 E-value=11 Score=40.12 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=65.4
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEECCC-eEEEEeCCCce-EEEeCC--CCCCEEEEEEEeCCCEEEEEECC-----Cc
Q 001321 30 VHYGIPATASILAFDHIQR-LLAIATLDG-RIKVIGGDGIE-GLLISP--SQLPYKNLEFLQNQGFLISITND-----NE 99 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~-lLA~gs~dG-~I~vw~~~~~~-~~~~~~--h~~~V~~l~fs~d~~~Lls~s~d-----~~ 99 (1100)
...-+|....-++|+|... -+|.+-.=| ...|||.++.+ .++... ...-.-+=+|+|||.+|...-.| |.
T Consensus 62 ~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 62 FATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred eeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCce
Confidence 3344566667788888764 456665544 56788885433 222221 11234445799998888776443 56
Q ss_pred EEEEEcCCCc-eeeee-ecCCCeEEEEEecCCCEEEEEe
Q 001321 100 IQVWSLESRS-LACCL-KWESNITAFSVISGSHFMYIGD 136 (1100)
Q Consensus 100 I~vWd~~s~~-~l~~~-~~~~~Vt~~~~s~~~~~l~~G~ 136 (1100)
|.|||.+.+- .+..+ .+.-.-.-+.+.+|++.|++..
T Consensus 142 iGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 142 IGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred EEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 9999998542 22222 2222456788899999988873
No 397
>PF10979 DUF2786: Protein of unknown function (DUF2786); InterPro: IPR024498 This domain is found in proteins that have no known function.
Probab=91.47 E-value=0.12 Score=38.47 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhh
Q 001321 1055 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1093 (1100)
Q Consensus 1055 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1100)
+|+.+|.+||=.+-+.+.-=.++|+.+..+|++||.+|-
T Consensus 1 ekil~kI~kLLalA~~~~~~~~EA~~A~~kAq~Lm~ky~ 39 (43)
T PF10979_consen 1 EKILEKIRKLLALAESTGSNEHEAEAALAKAQRLMAKYG 39 (43)
T ss_pred ChHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478899999998888766667899999999999999873
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.40 E-value=23 Score=38.04 Aligned_cols=177 Identities=12% Similarity=0.089 Sum_probs=103.4
Q ss_pred ccccceeeeecCCCCCeE--EEEEcCCCCEEEEEECCC--eEEEEeCCCceEEE--eCCCCCCEEEEEEEeCCCEEEEEE
Q 001321 22 ADLNLRIAVHYGIPATAS--ILAFDHIQRLLAIATLDG--RIKVIGGDGIEGLL--ISPSQLPYKNLEFLQNQGFLISIT 95 (1100)
Q Consensus 22 ~~~~~~~~~~~G~~~~v~--~la~sp~~~lLA~gs~dG--~I~vw~~~~~~~~~--~~~h~~~V~~l~fs~d~~~Lls~s 95 (1100)
..+.++.+..|-|+...- .+.|..++.++-+.+.-| .|+.++....++.. ..+...-=..+....| .|.-.+
T Consensus 29 ~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT 106 (264)
T PF05096_consen 29 PVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT 106 (264)
T ss_dssp -EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred ceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence 345788889998877754 488877777777766665 88999997766553 3333332334444444 344444
Q ss_pred -CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001321 96 -NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 96 -~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
.++...+||..+-+.+..+..++.=..++ .+++.|+..+.+..+ +.+|..+-+.... ..+.... . |
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L--~~~dP~~f~~~~~-i~V~~~g--~----p-- 173 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRL--YFLDPETFKEVRT-IQVTDNG--R----P-- 173 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEE--EEE-TTT-SEEEE-EE-EETT--E----E--
T ss_pred ecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccce--EEECCcccceEEE-EEEEECC--E----E--
Confidence 57889999999999998887777666776 456778877666655 5555543333221 1222111 0 0
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~ 217 (1100)
...+.-+.|. +|...+=.+..-.|..-|..+|++.....
T Consensus 174 -v~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 174 -VSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp ----EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred -CCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 1345566663 46655556677778888999998876553
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.90 E-value=9.4 Score=46.78 Aligned_cols=147 Identities=14% Similarity=0.211 Sum_probs=96.1
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEe-----------------------CCCCCCEEEEEEEe--CCCEEEEEECCCcEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLI-----------------------SPSQLPYKNLEFLQ--NQGFLISITNDNEIQ 101 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~-----------------------~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~ 101 (1100)
..+|.+|. .+.|+||+.+....... .+-...|..|.... +...|+.|.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 77888877 79999999855433110 00112355555443 446788999999999
Q ss_pred EEEcCC-------C----c---------eeeeeecCCCeEEEEEe--cCCCEEEEEeCCCcEEEEEEecCCCeeeeecee
Q 001321 102 VWSLES-------R----S---------LACCLKWESNITAFSVI--SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1100)
Q Consensus 102 vWd~~s-------~----~---------~l~~~~~~~~Vt~~~~s--~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~ 159 (1100)
+|.+++ . . ..-.+..+..++.+++. ...+++|+++....|.|+-+.....+...
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~---- 203 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH---- 203 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc----
Confidence 997621 0 0 11122334678999998 88899999999999999998864322221
Q ss_pred ecccccccccCCCCCCCCCeEEEEeccCCC---CC-EEEEEEcCCEEEEEEcc
Q 001321 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSS---GN-RVLIAYENALVILWDVS 208 (1100)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~---g~-~ll~~~~dg~V~lwdl~ 208 (1100)
.+.+. +..-|-+|.|-+.+. |. .|++++=.|.|.+|++.
T Consensus 204 ~~s~~----------~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 204 VPSHQ----------HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccc----------cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 11110 225588888877642 22 57788889999888873
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=0.96 Score=56.23 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=92.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCCceE------EEeC------CCCCCEEEEEEEeCCC-EEEEEECCCc
Q 001321 35 PATASILAFDHIQRLLAIATLDG--RIKVIGGDGIEG------LLIS------PSQLPYKNLEFLQNQG-FLISITNDNE 99 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG--~I~vw~~~~~~~------~~~~------~h~~~V~~l~fs~d~~-~Lls~s~d~~ 99 (1100)
...+..++..+|+.+.++-...+ .|..||+...+. ..+. +...-..++.|.|.-. ..+.+..|..
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 33566788888887776665444 788899844321 1112 2223456777777532 2455567888
Q ss_pred EEEEEcCCC-ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 100 IQVWSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 100 I~vWd~~s~-~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
|+|..+.-. ..+.++.....++|++|+|.++.+++|..+|++.-+....+ +. ..++.. |......
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---ik---~~ip~P--------p~~e~yr 245 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---IK---SEIPEP--------PVEENYR 245 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc---ee---ecccCC--------CcCCCcc
Confidence 888877543 33444566778999999999999999999998754443321 11 112211 1111367
Q ss_pred eEEEEeccCCCCCEEEEEEcCCE
Q 001321 179 VVGVLPHPNSSGNRVLIAYENAL 201 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~ 201 (1100)
|.+|.|-- ... +++.|..++
T Consensus 246 vl~v~Wl~--t~e-flvvy~n~t 265 (1405)
T KOG3630|consen 246 VLSVTWLS--TQE-FLVVYGNVT 265 (1405)
T ss_pred eeEEEEec--cee-EEEEecccc
Confidence 99999932 233 677777765
No 401
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.77 E-value=3 Score=50.85 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=102.8
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeE----Eeee--ccceee-------eeecCCCCCeeEEEEee--CCCeEEEE
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKL----ICAL--DAEVQG-------IEVAGSRAPVSTLSFCF--INSSLAVG 554 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~----~~~l--~~~~~~-------~~l~~h~~~Vt~lafsp--d~~~Lasg 554 (1100)
+.+. +++|++|. .+.|.||+.......+ ...+ ...... .....| .|..|..+- ....|+.+
T Consensus 45 alsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PH--tIN~i~v~~lg~~EVLl~c 120 (717)
T PF08728_consen 45 ALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPH--TINFIKVGDLGGEEVLLLC 120 (717)
T ss_pred EEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCc--eeeEEEecccCCeeEEEEE
Confidence 4555 67787776 7789999986543221 1111 111110 001223 466665554 34578999
Q ss_pred ecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEc--CCCCEEEEEeCCceEEEEec
Q 001321 555 NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT--SSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 555 ~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafS--p~g~~LavGs~dG~V~vwD~ 632 (1100)
.+||.|.+|....-....+. + ..............|...+ .....++.|++. ...++||+++....|.||-.
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~-~----~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIER-F----SEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHh-h----ccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 99999999987432100000 0 0000000000111122222 235589999999 88899999999888888765
Q ss_pred CCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 633 NLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
......+.......|..-|-+|+|-.+..+ ......|++++=.|.+.+|+.
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d----------------~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLD----------------PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCC----------------CccceEEEEEeccCcEEEEEE
Confidence 542111111111136778889999866544 111257888888999999884
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.68 E-value=11 Score=41.64 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=77.4
Q ss_pred CccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEec
Q 001321 487 PITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1100)
Q Consensus 487 ~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~ 566 (1100)
..+..++++++++.+..-....-||-....-+ .........|++|.|.|++.+.+++ ..|.+++=+..
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-----------~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-----------PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-----------EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCccce-----------EEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 33456789987777654444567776544433 2223344689999999998776644 88888776622
Q ss_pred CCCCCcceeeeccCCCceeeccCCCcceeEEEEee-------cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEE
Q 001321 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-------VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~ 639 (1100)
... ..+.. -.-.+..|+|.++....|+|.. |++ +....+++.-.
T Consensus 216 ~~~---------------------------~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~ 266 (302)
T PF14870_consen 216 DDG---------------------------ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQ 266 (302)
T ss_dssp TEE---------------------------EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-E
T ss_pred CCc---------------------------cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccce
Confidence 220 11111 1123678999999887776654 543 44555554432
Q ss_pred EeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEE
Q 001321 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIV 697 (1100)
Q Consensus 640 ~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~ 697 (1100)
+.......++....+.|... ..-++.+.+|.|+-|
T Consensus 267 ~~~~~~~~~~n~~~i~f~~~-----------------------~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 267 KDRVGENVPSNLYRIVFVNP-----------------------DKGFVLGQDGVLLRY 301 (302)
T ss_dssp E-GGGTTSSS---EEEEEET-----------------------TEEEEE-STTEEEEE
T ss_pred ECccccCCCCceEEEEEcCC-----------------------CceEEECCCcEEEEe
Confidence 33333346778889999732 226777888888766
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.38 E-value=33 Score=38.03 Aligned_cols=160 Identities=8% Similarity=0.053 Sum_probs=77.8
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCC
Q 001321 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEG 151 (1100)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~ 151 (1100)
.+-.+.+..+..++||.+++.....+...-||--... ..+.......|.+|.|.|++.+.+++ ..|.|+.=+...+..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4455779999999998777766666666788854322 22233345789999999997765554 788665544111111
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCC
Q 001321 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1100)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~ 231 (1100)
..... .++ .....-.+..++|.| +.. +.++..+|. .+.+.+.++--+... ..
T Consensus 220 ~w~~~--~~~----------~~~~~~~~ld~a~~~--~~~-~wa~gg~G~-l~~S~DgGktW~~~~--------~~---- 271 (302)
T PF14870_consen 220 TWSEP--IIP----------IKTNGYGILDLAYRP--PNE-IWAVGGSGT-LLVSTDGGKTWQKDR--------VG---- 271 (302)
T ss_dssp EE-----B-T----------TSS--S-EEEEEESS--SS--EEEEESTT--EEEESSTTSS-EE-G--------GG----
T ss_pred ccccc--cCC----------cccCceeeEEEEecC--CCC-EEEEeCCcc-EEEeCCCCccceECc--------cc----
Confidence 11110 011 011113489999965 555 777788886 366666665322210 00
Q ss_pred CCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEE
Q 001321 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1100)
Q Consensus 232 ~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lW 277 (1100)
..-+..+..+.|..+ +.-...+.+|.|.-|
T Consensus 272 --------------~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 272 --------------ENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY 301 (302)
T ss_dssp --------------TTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred --------------cCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence 001556778887633 445556678988766
No 404
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.31 E-value=8.4 Score=48.00 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=56.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEE-----EeCCC-----c-eE----------EEeCCCCCCEEEEEEEeC---CC
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKV-----IGGDG-----I-EG----------LLISPSQLPYKNLEFLQN---QG 89 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~v-----w~~~~-----~-~~----------~~~~~h~~~V~~l~fs~d---~~ 89 (1100)
....|..+.++|+|++||..+..|...+ |+..+ . ++ ++...+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3457889999999999999998875554 43221 1 11 122345568999999996 58
Q ss_pred EEEEEECCCcEEEEEcCCC
Q 001321 90 FLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 90 ~Lls~s~d~~I~vWd~~s~ 108 (1100)
.|+.-++|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999653
No 405
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.08 E-value=36 Score=41.47 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=40.6
Q ss_pred ecCcEEEeecCChhhhhhccccceeeeeeccccccceeec-CCcEEEEcceeEEEEEe
Q 001321 829 QTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANGSEVAFVNL 885 (1100)
Q Consensus 829 ~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g~e~~~~s~ 885 (1100)
.++.|.+||||.+.+....++.++++=+. +-+-+|+.- .-+++|++++-|.++.+
T Consensus 249 ~~~~i~~ysip~f~~~~tI~l~~ii~~~~--~~~vSl~~~s~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 249 SKKTISSYSIPNFQIQKTISLPSIIDKES--DDLVSLKPPSPNRVLLSVNNKIYLLDL 304 (670)
T ss_pred eCCEEEEEEcCCceEEEEEEechhhcccc--ccceEeecCCCCeEEEEcCCEEEEEee
Confidence 89999999999999888887776555222 223344433 67899999988888876
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.97 E-value=6.8 Score=45.95 Aligned_cols=153 Identities=14% Similarity=0.216 Sum_probs=80.9
Q ss_pred CEEEEEEEeCCCEEEEEE--CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCC-----CEEEEEeCCCcEEEEEEec--
Q 001321 78 PYKNLEFLQNQGFLISIT--NDNEIQVWSLESRSLACCLKWESNITAFSVISGS-----HFMYIGDENGLMSVIKYDA-- 148 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s--~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~-----~~l~~G~~dG~V~Iw~~d~-- 148 (1100)
||-.++|....+.+++.- .+|++++=|- ..+..-..|..++|.|-+ .+||+- -...|.||.+-.
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPST 93 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCc
Confidence 777888876544444432 2333333221 112222458889999863 355554 455689999863
Q ss_pred -CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC--EEEEEecCCcccccc
Q 001321 149 -DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKD 225 (1100)
Q Consensus 149 -~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~--~~~~~~~~~~~~~~~ 225 (1100)
+++++... .+.. ..+. +| --..++.|||. ...|++-.....-+++++... ++..-...
T Consensus 94 ~e~~K~l~s-QtcE---i~e~--~p----vLpQGCVWHPk--~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~------- 154 (671)
T PF15390_consen 94 TERNKLLMS-QTCE---IREP--FP----VLPQGCVWHPK--KAILTVLTARDVSVLPSVHCDSSRVKADIKT------- 154 (671)
T ss_pred cccccceee-eeee---ccCC--cc----cCCCcccccCC--CceEEEEecCceeEeeeeeeCCceEEEeccC-------
Confidence 23333210 0000 0010 11 22456789995 332333333333357776543 33222211
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC-CcEEEEecC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTS 280 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D-G~I~lWd~~ 280 (1100)
.+.|.|+||. +||.+|+++-.. =.-.+||-.
T Consensus 155 -----------------------~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 -----------------------SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred -----------------------CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 7889999997 899988876433 234678743
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.94 E-value=2 Score=49.44 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=64.3
Q ss_pred EEEEcCCCCEEEEEeCCceEEE---Eec--CC-----ceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCC
Q 001321 608 ALQFTSSGAKLAVGFECGRVAV---LDM--NL-----LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVP 677 (1100)
Q Consensus 608 sLafSp~g~~LavGs~dG~V~v---wD~--~~-----~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~ 677 (1100)
.++.+|++.+||+|..+..|.+ |+. .+ ..+.+......+....|+++.+-+..... .+.
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~-----------~s~ 74 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQK-----------RST 74 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeeccc-----------ccC
Confidence 5788999999999988887666 533 11 12222222211223789999888664331 023
Q ss_pred CCCCceEEEEEecceeEEEEeCCCCccccCCccccC
Q 001321 678 VNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLK 713 (1100)
Q Consensus 678 ~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~ 713 (1100)
..++..++++|+.+|.|++|. ++|.+|-+..+++.
T Consensus 75 ~~~dw~~I~VG~ssG~vrfyt-e~G~LL~~Q~~h~~ 109 (415)
T PF14655_consen 75 GGPDWTCIAVGTSSGYVRFYT-ENGVLLLSQLLHEE 109 (415)
T ss_pred CCCCcEEEEEEecccEEEEEe-ccchHHHHHhcCcc
Confidence 467789999999999999999 69999888755533
No 408
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=89.64 E-value=6.1 Score=35.87 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=57.0
Q ss_pred CCCcceEEEEecccccCCCCCCceEEEEeCCCC---CCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCC
Q 001321 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI---GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAG 381 (1100)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~---g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~ 381 (1100)
....+|..+.|.... ....-++.+||-.. ++.++++++. +.+ ...+....++.||..+..+.
T Consensus 11 ~pCk~I~Ki~w~~~~----~~~~~iiFsGGmp~~~ygdr~~vTV~~-g~~----------~~~ldf~s~VIDF~~i~~~~ 75 (105)
T PF08366_consen 11 FPCKAINKILWRTSR----NGEPFIIFSGGMPRASYGDRHCVTVMQ-GKT----------HVVLDFTSRVIDFFTICESP 75 (105)
T ss_pred CCCceeeEEEEEecC----CCCcEEEEeCCccccccCCCceEEEEe-CCE----------EEEEEcCCceEEEEEEcCCC
Confidence 345567777776642 22334555666544 3468888887 322 26678888999999998876
Q ss_pred C-CCCCCcceEEEEecCCeeeEee
Q 001321 382 A-TVGNHKADLFVLTSPGQLHFYD 404 (1100)
Q Consensus 382 ~-~~~~~~~~l~vl~~~G~l~~~d 404 (1100)
. ...++|.+++|+++. +++++|
T Consensus 76 ~~~e~~~P~alvVL~e~-eLVvID 98 (105)
T PF08366_consen 76 WPNEFQDPYALVVLLEE-ELVVID 98 (105)
T ss_pred CccccCCCcEEEEEEcC-cEEEEE
Confidence 5 467888999998877 666666
No 409
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=1.1 Score=51.28 Aligned_cols=76 Identities=11% Similarity=0.168 Sum_probs=57.1
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
+.-.|--...-+|.|-..+| ++|+|+.+|.||||+.-..... .+.+-..+|+++..+.||.++++.| +.++.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 33445445566777777666 7899999999999999555444 4556677999999999998888766 677777664
No 410
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.33 E-value=10 Score=35.95 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=78.4
Q ss_pred EEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcC-----CC
Q 001321 541 TLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS-----SG 615 (1100)
Q Consensus 541 ~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp-----~g 615 (1100)
.-.|......|+.++..|.|.|++.......... ..--..+-.-...|++|+--+ ..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~------------------~~~~i~~LNin~~italaaG~l~~~~~~ 64 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR------------------QDSDISFLNINQEITALAAGRLKPDDGR 64 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc------------------ccCceeEEECCCceEEEEEEecCCCCCc
Confidence 3456667778999999999999987654221000 001122334566788876544 34
Q ss_pred CEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEE
Q 001321 616 AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKIS 695 (1100)
Q Consensus 616 ~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~ 695 (1100)
..|.+|+... +..||+....-+|... .++.|.++.+..++.. ...++++|+ +.+|.
T Consensus 65 D~LliGt~t~-llaYDV~~N~d~Fyke----~~DGvn~i~~g~~~~~------------------~~~l~ivGG-ncsi~ 120 (136)
T PF14781_consen 65 DCLLIGTQTS-LLAYDVENNSDLFYKE----VPDGVNAIVIGKLGDI------------------PSPLVIVGG-NCSIQ 120 (136)
T ss_pred CEEEEeccce-EEEEEcccCchhhhhh----CccceeEEEEEecCCC------------------CCcEEEECc-eEEEE
Confidence 6899998765 8999999988885444 4788999999876643 235555554 67777
Q ss_pred EEeCC
Q 001321 696 IVGGS 700 (1100)
Q Consensus 696 v~d~~ 700 (1100)
=||.+
T Consensus 121 Gfd~~ 125 (136)
T PF14781_consen 121 GFDYE 125 (136)
T ss_pred EeCCC
Confidence 77733
No 411
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.26 E-value=6.2 Score=40.71 Aligned_cols=117 Identities=18% Similarity=0.359 Sum_probs=73.9
Q ss_pred CEEEEEECCCcEEEEEcC--CCceeeeeecCCCeEEEEEecCCCEEEEEeCC---C---cEEEE-EEecC--CCeeeeec
Q 001321 89 GFLISITNDNEIQVWSLE--SRSLACCLKWESNITAFSVISGSHFMYIGDEN---G---LMSVI-KYDAD--EGKLFQLP 157 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~--s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d---G---~V~Iw-~~d~~--~~~l~~~~ 157 (1100)
..|+.+...+.|.+|++. ..++++.+..-+.|..+..+..|+|+++--++ . .+|+| +|+.. ..... .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v--~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV--R 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE--E
Confidence 456555778889999998 34567777777999999999999999986442 2 45553 23332 11111 1
Q ss_pred eeecccccc-----------cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE
Q 001321 158 YNISADALS-----------EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 158 ~~i~~~~~~-----------~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
.++-+|... +....|. ..++.+++-.|. .|+ |++|+.+.. .+|.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl--~~~p~ciaCC~~-tG~-LlVg~~~~l-~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPL--SEPPLCIACCPV-TGN-LLVGCGNKL-VLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecC--CCCCCEEEecCC-CCC-EEEEcCCEE-EEEEEEEEEE
Confidence 233343211 1112222 256788888776 677 888887765 7898776544
No 412
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.09 E-value=14 Score=41.07 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=65.9
Q ss_pred cCCCCCeeEEEEeeCCCeEEEEecC-ceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEE
Q 001321 533 AGSRAPVSTLSFCFINSSLAVGNEF-GLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF 611 (1100)
Q Consensus 533 ~~h~~~Vt~lafspd~~~Lasg~~d-G~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLaf 611 (1100)
..|-.--..|+||||++.|..+... +.+.-|++...... ..+......+....+..-.++.
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~------------------~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGP------------------IGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCc------------------cCCcceEEEccCCCCCCCceEE
Confidence 3334456789999999888777764 77777777631110 0001123333445677778889
Q ss_pred cCCCCEEEEEeCCc-eEEEEecCCceEEEEeecCCCCCCCeEEEEEe
Q 001321 612 TSSGAKLAVGFECG-RVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1100)
Q Consensus 612 Sp~g~~LavGs~dG-~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs 657 (1100)
..+|.+-+++-.+| .|.+|+.. ++.+-.+.. .-..+++++|.
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~Fg 263 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFG 263 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEe
Confidence 99998665555554 89999999 666544433 22678888887
No 413
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.57 E-value=2.2 Score=43.16 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=51.0
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEecCCceE----------------------EEEeecC------C----------CC
Q 001321 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSV----------------------LFFTDDI------S----------GS 647 (1100)
Q Consensus 606 VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~----------------------~~~~~~~------~----------~~ 647 (1100)
..+|+||.||+ ||+++.+. |.|+|..+|.. .+..+.. . ..
T Consensus 7 ~~~l~WS~Dg~-laV~t~~~-v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s 84 (173)
T PF12657_consen 7 PNALAWSEDGQ-LAVATGES-VHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEIS 84 (173)
T ss_pred CcCeeECCCCC-EEEEcCCe-EEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccc
Confidence 35899999995 77777665 78886555540 0001111 0 01
Q ss_pred CCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 648 SSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 648 ~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
...|.+++|++.|.. .+...+|++.|.+|.|.+|...
T Consensus 85 ~~~vv~~aWSP~Gl~----------------~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLG----------------PNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cccEEEEEECCCCCC----------------CCCceEEEEEcCCCeEEEEecC
Confidence 136778888876654 3457899999999999999943
No 414
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.32 E-value=52 Score=37.48 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCCCEEEE-----EEEeCCCEEEEEEC-C--CcEEEEEcCCCceeeeeecCCC-eEEEEEecCCCEEEEE
Q 001321 65 DGIEGLLISPSQLPYKNL-----EFLQNQGFLISITN-D--NEIQVWSLESRSLACCLKWESN-ITAFSVISGSHFMYIG 135 (1100)
Q Consensus 65 ~~~~~~~~~~h~~~V~~l-----~fs~d~~~Lls~s~-d--~~I~vWd~~s~~~l~~~~~~~~-Vt~~~~s~~~~~l~~G 135 (1100)
.+.+++.+..+.+--..+ +|.+||.+|+-++. + ..+...|+.+++.......++. .....++++.+.++--
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEE
Confidence 344555555554433334 46678877776664 4 4588889999988877754422 2245566777776543
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccc
Q 001321 136 DENGLMSVIKYDADEGKLFQLPYNISADA 164 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~ 164 (1100)
..+..| +.++..+.+.... |.+|..+
T Consensus 99 ~~~~~l--~~vdL~T~e~~~v-y~~p~~~ 124 (386)
T PF14583_consen 99 KNGRSL--RRVDLDTLEERVV-YEVPDDW 124 (386)
T ss_dssp ETTTEE--EEEETTT--EEEE-EE--TTE
T ss_pred ECCCeE--EEEECCcCcEEEE-EECCccc
Confidence 334444 6666655555443 8888654
No 415
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.30 E-value=21 Score=40.25 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCe------EEEEeCCC-----ceEE------EeCCCCC-------CEEEEEEEeCCCE
Q 001321 35 PATASILAFDHIQRLLAIATLDGR------IKVIGGDG-----IEGL------LISPSQL-------PYKNLEFLQNQGF 90 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~------I~vw~~~~-----~~~~------~~~~h~~-------~V~~l~fs~d~~~ 90 (1100)
-+..+.|+|+|++..+.+-+++|. +..+.++. ..+. +..+... ....|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 447899999966656666677777 66655533 1111 1112222 3458888788877
Q ss_pred EEEEECC------CcEEEEEcCCCceeeee----------------ecCCCeEEEEEecCCCEEEEEeCCC---------
Q 001321 91 LISITND------NEIQVWSLESRSLACCL----------------KWESNITAFSVISGSHFMYIGDENG--------- 139 (1100)
Q Consensus 91 Lls~s~d------~~I~vWd~~s~~~l~~~----------------~~~~~Vt~~~~s~~~~~l~~G~~dG--------- 139 (1100)
+++-=.+ ..|..++.. ++....+ ......-+++++|+++.|++..+..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776666 778888876 5443332 1224588999999999887776533
Q ss_pred -----cEEEEEEecCC
Q 001321 140 -----LMSVIKYDADE 150 (1100)
Q Consensus 140 -----~V~Iw~~d~~~ 150 (1100)
.++|+.++...
T Consensus 178 ~~~~~~~ri~~~d~~~ 193 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKT 193 (326)
T ss_pred cccCceEEEEEecCCC
Confidence 27888888754
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.05 E-value=13 Score=42.89 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=54.2
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEeC---CCc--eEEEeCCCCCCEEEEEEEeCCCEEEEEECCC
Q 001321 36 ATASILAFDHIQRLLAIAT-----------LDG-RIKVIGG---DGI--EGLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs-----------~dG-~I~vw~~---~~~--~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~ 98 (1100)
..+..|+|+++|++.++-. ..+ +|.++.- ++. +.......-.....++|.+++ |+.++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence 5778899999999877643 224 8888864 222 222333333345889999997 4444434
Q ss_pred cEE-EEEcCC-------Cc-eeeeeec-----CCCeEEEEEecCCCE
Q 001321 99 EIQ-VWSLES-------RS-LACCLKW-----ESNITAFSVISGSHF 131 (1100)
Q Consensus 99 ~I~-vWd~~s-------~~-~l~~~~~-----~~~Vt~~~~s~~~~~ 131 (1100)
.|. +.|... .+ ++..+.. ......+.+.|++.+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L 137 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL 137 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE
Confidence 444 435432 12 2222322 233778999999864
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.40 E-value=2.7 Score=44.36 Aligned_cols=64 Identities=23% Similarity=0.240 Sum_probs=46.9
Q ss_pred EEeCCCEEEEEECCCcEEEEEcCCCceeeee---------------ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 84 FLQNQGFLISITNDNEIQVWSLESRSLACCL---------------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 84 fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~---------------~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
+..++.+|++++.+|.+.+||+.+++.+..- .....|+.+.++.+|.-+ +...+|..+.|+.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi-V~lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI-VTLSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE-EEEeCCCEEEecccc
Confidence 4456789999999999999999998764322 233578889998666544 455678777777653
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.28 E-value=2 Score=31.80 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.8
Q ss_pred cCeEEEEEcCCC---CEEEEEeCCceEEEEecCC
Q 001321 604 SPVRALQFTSSG---AKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 604 ~~VtsLafSp~g---~~LavGs~dG~V~vwD~~~ 634 (1100)
|+|.+++|||.. .+||..-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 5899988889999999995
No 419
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.87 E-value=69 Score=40.71 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=60.5
Q ss_pred CCCeeEEEEee----C---CCeEEEEec----CceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEE-EeecC
Q 001321 536 RAPVSTLSFCF----I---NSSLAVGNE----FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVN 603 (1100)
Q Consensus 536 ~~~Vt~lafsp----d---~~~Lasg~~----dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~h~ 603 (1100)
-..++.|.|-+ . -..|++.+. ...|.-|.+..........|..-+.+..........+.+... -....
T Consensus 180 ~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~ 259 (753)
T PF11635_consen 180 MYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLN 259 (753)
T ss_pred cccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccC
Confidence 35788888876 1 123444432 346888888776433222222211111100111111111111 11246
Q ss_pred cCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEE
Q 001321 604 SPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLF 639 (1100)
Q Consensus 604 ~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~ 639 (1100)
+.|.+++...-+.+|+...+||+|.++|..+-+.+.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc
Confidence 789999999989899999999999999999877663
No 420
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.86 E-value=24 Score=38.59 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=69.1
Q ss_pred cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEe------cCceEEEEEecCCCCCcceeeecc
Q 001321 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN------EFGLVYIYNLNGSLDAKNFLFVLE 579 (1100)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~------~dG~V~lw~l~~~~~~~~~~~~~~ 579 (1100)
.|++||.....-. ..-.+-.+.|++|.|..++..++.|. ....+..|++....
T Consensus 17 ~lC~yd~~~~qW~-----------~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~---------- 75 (281)
T PF12768_consen 17 GLCLYDTDNSQWS-----------SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT---------- 75 (281)
T ss_pred EEEEEECCCCEee-----------cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe----------
Confidence 4899998766533 11112336799999998877887776 34567778877652
Q ss_pred CCCceeeccCCCcceeEEEE-----eecCcCeEEEEEcC-CC-CEEEEEe-CCceEEEEecCCceEEEEeecCCCCCCCe
Q 001321 580 TKSEVHALPEGKISLCRAVF-----SLVNSPVRALQFTS-SG-AKLAVGF-ECGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1100)
Q Consensus 580 ~~~~~~~i~~~~~~~~~~~~-----~~h~~~VtsLafSp-~g-~~LavGs-~dG~V~vwD~~~~~~~~~~~~~~~~~~~V 651 (1100)
...+ ...+++|+++.+.. |+ ++.+.|. .+|...|.-.++.+..............|
T Consensus 76 ----------------w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I 139 (281)
T PF12768_consen 76 ----------------WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTI 139 (281)
T ss_pred ----------------eeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEE
Confidence 1111 23468899998843 33 4555554 45555555555444331111112345688
Q ss_pred EEEEEeec
Q 001321 652 ISMTWTEF 659 (1100)
Q Consensus 652 ~sl~fs~~ 659 (1100)
..+++-+.
T Consensus 140 ~~l~~~~l 147 (281)
T PF12768_consen 140 RGLQVLPL 147 (281)
T ss_pred EEEEEEec
Confidence 88988865
No 421
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.80 E-value=7.9 Score=49.01 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=93.8
Q ss_pred CEEEEEECC---------CeEEEEeCCC-------------ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 48 RLLAIATLD---------GRIKVIGGDG-------------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 48 ~lLA~gs~d---------G~I~vw~~~~-------------~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
.+||+|+.- |+|+||+.-. ...+...+-+++|+.++=... +|+++. ...|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G--~l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRG--HLLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEecc--EEEEcc-CcEEEEEEe
Confidence 589999742 9999998511 134456678889999876543 455544 667999999
Q ss_pred -CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 106 -ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 106 -~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
+...++-.....-++.-.+...=.++++.|+--..|.+..++.+..++....-..+ .-.|.++.|
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~--------------~l~v~s~EF 1189 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE--------------PLNVYSTEF 1189 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCc--------------hhhceeeee
Confidence 45555444444445555555556789999999888999999876655553211111 145777777
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 185 HPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
--....-.++++..++.|.+|-..
T Consensus 1190 LVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1190 LVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEcCCeeEEEEEcCCCcEEEEEeC
Confidence 432222246788888888877544
No 422
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.96 E-value=16 Score=37.71 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=73.6
Q ss_pred cEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecC---c---eEEEE-EecCC
Q 001321 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF---G---LVYIY-NLNGS 568 (1100)
Q Consensus 496 ~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~d---G---~V~lw-~l~~~ 568 (1100)
..|..+...+.|.+|++....+.+++.+.+ + +.|..|+++..|.+|++--.+ . .+|+| +|+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T------v----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST------V----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc------h----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 344444666789999999777776666642 1 478999999999999986553 2 56766 34433
Q ss_pred CCC-cceeeeccCCCceeeccC-CCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 569 LDA-KNFLFVLETKSEVHALPE-GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 569 ~~~-~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
..+ .....+..+- .+..... ..+-+.-..-...+.++++++..|...-|++|+.+ .+.||.+...
T Consensus 99 ~~~~~~v~vRiaG~-~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGH-RVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEccc-ccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEE
Confidence 111 0010000000 0000000 01111212212346788999999966668999875 4889987643
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.87 E-value=41 Score=38.99 Aligned_cols=147 Identities=10% Similarity=-0.023 Sum_probs=83.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-----e
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----L 110 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-----~ 110 (1100)
....+..++++.++++|......+-|+.-... .....+....++.+.|.+++..++.+ .+|.+ +|....++ -
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~ 317 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFD 317 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccc
Confidence 34556778899998888765444445543322 22344455679999999997666544 55554 44444443 2
Q ss_pred eeeeecC---CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee-eeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 111 ACCLKWE---SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-FQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 111 l~~~~~~---~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l-~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
....... ..++.+.+.+++..+++| .+|.|.... +.++- .. .+... .-......+.|.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~---D~G~tW~~----~~~~~---------~~~~~ly~v~f~~ 380 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST---DGGKSWKR----DKGAD---------NIAANLYSVKFFD 380 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC---CCCcceeE----ccccC---------CCCcceeEEEEcC
Confidence 2222222 348889998777765555 566553322 12222 21 11000 0015577888843
Q ss_pred CCCCCEEEEEEcCCEEEEE
Q 001321 187 NSSGNRVLIAYENALVILW 205 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lw 205 (1100)
+++ .++.+.+|.|.-|
T Consensus 381 --~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 381 --DKK-GFVLGNDGVLLRY 396 (398)
T ss_pred --CCc-eEEEeCCcEEEEe
Confidence 444 8888889986544
No 424
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.64 E-value=46 Score=38.94 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=39.6
Q ss_pred CEEEEEEEeCCCEEEE-EECCCc----EEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEE
Q 001321 78 PYKNLEFLQNQGFLIS-ITNDNE----IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIG 135 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls-~s~d~~----I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G 135 (1100)
.+....++||+.+|+- .+..|. |+|+|+++++.+........-..+.|.+++..++-.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEE
Confidence 3446788999988764 455444 999999999887644222223349999997765444
No 425
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.15 E-value=25 Score=44.26 Aligned_cols=148 Identities=13% Similarity=0.172 Sum_probs=93.4
Q ss_pred CeEEEEEcCCC--CEEEEEEC-----------CCeEEEEeC-CCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEE
Q 001321 37 TASILAFDHIQ--RLLAIATL-----------DGRIKVIGG-DGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQ 101 (1100)
Q Consensus 37 ~v~~la~sp~~--~lLA~gs~-----------dG~I~vw~~-~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~ 101 (1100)
.+.+++|+..+ .++++|.. +|.++.|.+ ...+.+ ++..-+-+-.-.+.+|.+++++++ ..+.++
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~ 957 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLR 957 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe-cccEEE
Confidence 45566676433 35666653 367888876 222322 222222233334556776766654 478999
Q ss_pred EEEcCCCceeeeee--c-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 102 VWSLESRSLACCLK--W-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 102 vWd~~s~~~l~~~~--~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
++|+-.++++.... + +..|+.+.+ ...++++|+..-+|..+.|+.+++++.. +-.+. -+..
T Consensus 958 ~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~----fadD~----------~pR~ 1021 (1205)
T KOG1898|consen 958 LYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV----FADDP----------VPRH 1021 (1205)
T ss_pred EeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE----EeCCC----------ccce
Confidence 99999998875542 2 455666665 4678999999888999999998888874 22221 1145
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEE
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVIL 204 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~l 204 (1100)
|+++.+ -+.++ ++.+..-|.+.+
T Consensus 1022 Vt~~~~--lD~~t-vagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1022 VTALEL--LDYDT-VAGADRFGNIAV 1044 (1205)
T ss_pred eeEEEE--ecCCc-eeeccccCcEEE
Confidence 777776 55666 888888776433
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=83.92 E-value=40 Score=38.21 Aligned_cols=153 Identities=8% Similarity=0.023 Sum_probs=84.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEE-EeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKV-IGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~v-w~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
+..+.+..++++|++.++++|.. |.+.. ++..+.... ...+-...+..+.+.+++..++ ++..|.+.+=....+.-
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-vg~~G~~~~~s~d~G~s 247 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWM-LARGGQIRFNDPDDLES 247 (334)
T ss_pred CCcceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEE-EecCCEEEEccCCCCCc
Confidence 33557888999999988877764 55543 332222222 2334445899999999866544 55567665333444432
Q ss_pred eeeeec-----CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 111 ACCLKW-----ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 111 l~~~~~-----~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
-..... ...+.++.+.+++..+++| .+|.|. ...| .++--+. ++.. .........+.|.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d--~G~tW~~---~~~~---------~~~~~~~~~~~~~ 311 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKD--GGKTWEK---DPVG---------EEVPSNFYKIVFL 311 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCC--CCCCCeE---CCcC---------CCCCcceEEEEEe
Confidence 222211 1347888898877765555 566542 2222 2221110 1100 0001356777773
Q ss_pred cCCCCCEEEEEEcCCEEEEEE
Q 001321 186 PNSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwd 206 (1100)
. +++ .++.+..|.|..|+
T Consensus 312 ~--~~~-~~~~G~~G~il~~~ 329 (334)
T PRK13684 312 D--PEK-GFVLGQRGVLLRYV 329 (334)
T ss_pred C--CCc-eEEECCCceEEEec
Confidence 2 444 78888889876665
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.80 E-value=14 Score=44.98 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe--eCCCeEEEEecCceEEEEEecCCC
Q 001321 492 HSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC--FINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 492 s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs--pd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
+.-+++.+.-....++.|||...+.+..-.. + .....|.+++|. |+++.+.+.+-...|.+|.-....
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---------f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEES---------F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeee---------e-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3344455544444469999999887542111 2 334689999986 588888888888899998754322
Q ss_pred CCcceeeeccCCCceeeccCCCcceeEEE--EeecC-cCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 570 DAKNFLFVLETKSEVHALPEGKISLCRAV--FSLVN-SPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~h~-~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
+.. .+..+.++.. +..|. .+|.+..|-++| .|++|+.+ .+.|+|-.
T Consensus 108 y~~----------------~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sGN-qlfv~dk~ 156 (631)
T PF12234_consen 108 YTN----------------KGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSGN-QLFVFDKW 156 (631)
T ss_pred hhc----------------CCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeCC-EEEEECCC
Confidence 110 0112222222 33443 789999999999 47777654 48888765
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=83.66 E-value=32 Score=40.65 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=89.0
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeC----CCEEEEEECCCcEEEEEcC--
Q 001321 35 PATASILAFDHIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN----QGFLISITNDNEIQVWSLE-- 106 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs--~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d----~~~Lls~s~d~~I~vWd~~-- 106 (1100)
-+.+.-+||.--.+.+.+.- .+|.++. ....++-..+| |..+.|.|- -..|+++-...+|.||-+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kf---Gds~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKF---GDSKVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCcccc---CCccEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 34666688874444444332 1222221 12233444455 888899884 4579999999999999974
Q ss_pred ---CCceeeee------ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 107 ---SRSLACCL------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 107 ---s~~~l~~~------~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
+.+.+.+. .++---..+.|+|....|++-.....=-+.++..+..++. ..+.+. +
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk---aDi~~~-------------G 156 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK---ADIKTS-------------G 156 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE---EeccCC-------------c
Confidence 34444433 1111234677889888887766544222344444444444 224322 7
Q ss_pred CeEEEEeccCCCCCEEEEEEcCC-EEEEEEccC
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENA-LVILWDVSE 209 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg-~V~lwdl~~ 209 (1100)
-|.|-.|.+ ||+||+++-.+. .-.+||=..
T Consensus 157 ~IhCACWT~--DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 157 LIHCACWTK--DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEEEEEecC--cCCEEEEEeCCeEEEEEecCch
Confidence 799999954 899888776664 335787544
No 429
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.55 E-value=45 Score=40.58 Aligned_cols=74 Identities=11% Similarity=0.054 Sum_probs=52.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
-+++.+++.+|..-. -..+.--.|+||+..+...-...-..+++..+.|+.+ ..|+++..+|++.|+++-....
T Consensus 43 ~gGpIAV~r~p~~~~-~~~~a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLV-PLYSARPYIRIFNISGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred cCCceEEEecccccc-cccccceeEEEEeccccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhh
Confidence 347777888873211 1113346799999988765544333348899999998 7899999999999999866543
No 430
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.36 E-value=6.6 Score=41.40 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=49.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC---------------CCCCCEEEEEEEeCCCEEEEEECCCc
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS---------------PSQLPYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~---------------~h~~~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
++.+.. +...+.+|.+-|.+|.+++||+.....++.. .....|+.+.+..+|.-+++.+ +|.
T Consensus 12 gs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 12 GSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred CCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 344544 4567889999999999999999776554332 3445688888887766555554 567
Q ss_pred EEEEEcCCC
Q 001321 100 IQVWSLESR 108 (1100)
Q Consensus 100 I~vWd~~s~ 108 (1100)
...||..-+
T Consensus 89 ~y~y~~~L~ 97 (219)
T PF07569_consen 89 SYSYSPDLG 97 (219)
T ss_pred EEEeccccc
Confidence 777776544
No 431
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.23 E-value=87 Score=35.41 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=36.2
Q ss_pred CCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceE
Q 001321 494 VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLV 560 (1100)
Q Consensus 494 ~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V 560 (1100)
.+.++++....+.|...++....-. . . .+..+......+..|++.|||.++++.+.+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~--~----~-~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSV--T----E-EEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEE--E----E-EEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCc--c----c-eEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4456776666666666555433210 0 0 011134555589999999999999988888876
No 432
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=82.56 E-value=3.2 Score=30.82 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=26.8
Q ss_pred CCeeEEEEeeCCC---eEEEEecCceEEEEEecC
Q 001321 537 APVSTLSFCFINS---SLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 537 ~~Vt~lafspd~~---~Lasg~~dG~V~lw~l~~ 567 (1100)
++|.++.|||+.. +|+.+-..|.|.|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998654 899898999999999985
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=82.36 E-value=40 Score=38.20 Aligned_cols=116 Identities=10% Similarity=-0.031 Sum_probs=62.5
Q ss_pred CCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEE-EeecCcCeEEEEEcCC
Q 001321 536 RAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNSPVRALQFTSS 614 (1100)
Q Consensus 536 ~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~h~~~VtsLafSp~ 614 (1100)
...++++.+.++++.+++| ..|.+++=.-+.. ..+..... .......++++++.++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G----------------------~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL----------------------ESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCC----------------------CccccccCCccccccceeeEEEcCC
Confidence 4579999999999887765 4576542111111 11110000 0011235788999998
Q ss_pred CCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeE
Q 001321 615 GAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKI 694 (1100)
Q Consensus 615 g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v 694 (1100)
+..+++| .+|.|. ....+++.-.........+.....+.|... ...+..+..|.|
T Consensus 271 ~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~G~~G~i 325 (334)
T PRK13684 271 GEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDP-----------------------EKGFVLGQRGVL 325 (334)
T ss_pred CCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCC-----------------------CceEEECCCceE
Confidence 8766665 567544 444443322111111123345566666511 226778889999
Q ss_pred EEEeC
Q 001321 695 SIVGG 699 (1100)
Q Consensus 695 ~v~d~ 699 (1100)
+.+++
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 99884
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.18 E-value=25 Score=40.70 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=55.7
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEEEec--------CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC--
Q 001321 119 NITAFSVISGSHFMYIGDENGLMSVIKYDA--------DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-- 188 (1100)
Q Consensus 119 ~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~--------~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~-- 188 (1100)
.|.-+..++.|..++..+.+|. .|..+.. ++++....-.+++ +...+ +.....-.+.-++|||..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi-~vMeLp~rwG~~s~~eDgk~~v~CRt~~---i~~~~-ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL-MVMELPKRWGKNSEFEDGKSTVNCRTTP---VAERF-FTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCee-EEEEchhhcCccceecCCCceEEEEeec---cccee-eccCCceeeeeccccCCccC
Confidence 4677888899999999999994 4555422 2222211101111 11111 222233567788999976
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQII 213 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~ 213 (1100)
|.. +++-.+|.++|+||+...+-+
T Consensus 180 D~h-L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 180 DPH-LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred Cce-EEEEecCcEEEEEecCCcchh
Confidence 554 999999999999999886544
No 435
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=82.16 E-value=10 Score=40.58 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=50.9
Q ss_pred cCcCeEEEEEcC----C--C-CEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEe-ecc-cCccccCCCCCC
Q 001321 602 VNSPVRALQFTS----S--G-AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT-EFK-NTHSLAKNPNHS 672 (1100)
Q Consensus 602 h~~~VtsLafSp----~--g-~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs-~~~-~~~~~~~~~~~~ 672 (1100)
....|||++--. + + ..|++|+++|.|.|+|-.+-.++.+... ++....+.-+ .+. .
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~l----psvPv~i~~~G~~dev----------- 239 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQL----PSVPVFISVSGQYDEV----------- 239 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEec----CCCceEEEEEeeeecc-----------
Confidence 345667765322 1 1 5799999999999999999999877766 3333333332 332 2
Q ss_pred CCCCCCCCCceEEEEEecceeEEEEe
Q 001321 673 EREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 673 ~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
...+++++.||.|+++.
T Consensus 240 ---------dyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 240 ---------DYRIVVACRDGKIYTIR 256 (257)
T ss_pred ---------ceEEEEEeCCCEEEEEe
Confidence 36799999999999875
No 436
>PRK10115 protease 2; Provisional
Probab=82.11 E-value=1.5e+02 Score=37.32 Aligned_cols=122 Identities=7% Similarity=-0.037 Sum_probs=70.3
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEEC
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLD-----GRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITN 96 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~d-----G~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~ 96 (1100)
.||+.....-+-.-.+..+.++|++++||.+.+. -.|++.+....+.+.. .... . ..++|++|+..|+-...
T Consensus 114 llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 114 LLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEe
Confidence 4666554332223457778999999999998654 4788888865443211 1121 2 45999999876655543
Q ss_pred C------CcEEEEEcCCC--ceeeeee-cCCCeE-EEEEecCCCEEEEEeCC---CcEEEEEE
Q 001321 97 D------NEIQVWSLESR--SLACCLK-WESNIT-AFSVISGSHFMYIGDEN---GLMSVIKY 146 (1100)
Q Consensus 97 d------~~I~vWd~~s~--~~l~~~~-~~~~Vt-~~~~s~~~~~l~~G~~d---G~V~Iw~~ 146 (1100)
+ ..|..+++.++ +-...+. ...... .+..+.+++++++...+ +.+.+++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 2 35888888887 3222232 222233 33334477777666543 34544443
No 437
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.42 E-value=6.6 Score=48.05 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=47.0
Q ss_pred CCCCEEEEEECCCeEEEEeCCC----ceE---EEeCCC--------------------CCCEEEEEEEe----CCCEEEE
Q 001321 45 HIQRLLAIATLDGRIKVIGGDG----IEG---LLISPS--------------------QLPYKNLEFLQ----NQGFLIS 93 (1100)
Q Consensus 45 p~~~lLA~gs~dG~I~vw~~~~----~~~---~~~~~h--------------------~~~V~~l~fs~----d~~~Lls 93 (1100)
++...++++..||.+....... ... .....+ ...+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4777899999999888887643 111 111111 13455566655 7789999
Q ss_pred EECCCcEEEEEcCCCceeeeeec
Q 001321 94 ITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 94 ~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
.+.|++|++||+.+++++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999777643
No 438
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.39 E-value=44 Score=40.52 Aligned_cols=125 Identities=14% Similarity=0.189 Sum_probs=76.1
Q ss_pred eeeecCCCCCeEEEEEcCCCC---EEEEEECCCeEEEEeCCCceEEEeC---C----------CC-CCE-----------
Q 001321 28 IAVHYGIPATASILAFDHIQR---LLAIATLDGRIKVIGGDGIEGLLIS---P----------SQ-LPY----------- 79 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~---lLA~gs~dG~I~vw~~~~~~~~~~~---~----------h~-~~V----------- 79 (1100)
+..-|..+.....+.+..+++ +|+.++.+|.+++.|....+.+... + .. .|+
T Consensus 293 D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~ 372 (527)
T TIGR03075 293 DEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGK 372 (527)
T ss_pred CCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCC
Confidence 344466677777777767776 8999999999999999765553110 0 00 011
Q ss_pred -----------------EEEEEEeCCCEEEEEEC---------------------------------CCcEEEEEcCCCc
Q 001321 80 -----------------KNLEFLQNQGFLISITN---------------------------------DNEIQVWSLESRS 109 (1100)
Q Consensus 80 -----------------~~l~fs~d~~~Lls~s~---------------------------------d~~I~vWd~~s~~ 109 (1100)
..+++.|+.+++..-.. -+.|.-||+.+++
T Consensus 373 ~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 373 KGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred CCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Confidence 11445554443332221 2458889999999
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
++-..........-.+.-.+.++++|+.+|.++++ |..+|+..
T Consensus 453 ~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~--D~~TGe~l 495 (527)
T TIGR03075 453 IVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAF--DAKTGEEL 495 (527)
T ss_pred eeeEecCCCCCCCcceEECCcEEEEECCCCeEEEE--ECCCCCEe
Confidence 88877544332211222355678889889977554 45557666
No 439
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.25 E-value=77 Score=35.73 Aligned_cols=118 Identities=14% Similarity=0.298 Sum_probs=66.0
Q ss_pred CCEEEEEEEeCCCEEEEEECCCc------EEEEEcCC--C---ce--ee---eeecCC--------CeEEEEEecCCCEE
Q 001321 77 LPYKNLEFLQNQGFLISITNDNE------IQVWSLES--R---SL--AC---CLKWES--------NITAFSVISGSHFM 132 (1100)
Q Consensus 77 ~~V~~l~fs~d~~~Lls~s~d~~------I~vWd~~s--~---~~--l~---~~~~~~--------~Vt~~~~s~~~~~l 132 (1100)
+.++.|.+.++++.+++++.++. +...++.. + .+ .. .....+ ..-++++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 46899999977788888888887 66666544 1 11 11 111112 33477884444 45
Q ss_pred EEEeCCC------cEEEEEEecCCCeeeeeceeecccccccccC-CCCCCCCCeEEEEeccCCCCCEEEEEEcCC
Q 001321 133 YIGDENG------LMSVIKYDADEGKLFQLPYNISADALSEKAG-FPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 133 ~~G~~dG------~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg 200 (1100)
+++++.+ . +||.++.+ +++... +.+|........+ ..........+|+++| +|..|+++-+..
T Consensus 99 ~is~E~~~~~~~~p-~I~~~~~~-G~~~~~-~~vP~~~~~~~~~~~~~~~N~G~E~la~~~--dG~~l~~~~E~~ 168 (326)
T PF13449_consen 99 WISSEGGRTGGIPP-RIRRFDLD-GRVIRR-FPVPAAFLPDANGTSGRRNNRGFEGLAVSP--DGRTLFAAMESP 168 (326)
T ss_pred EEEeCCccCCCCCC-EEEEECCC-Ccccce-EccccccccccCccccccCCCCeEEEEECC--CCCEEEEEECcc
Confidence 5555544 3 67888866 555432 4344322111000 1122346789999977 677676665543
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=81.02 E-value=4.7 Score=46.08 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=58.6
Q ss_pred ccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEE-eCCCCCCEEEEEEEeCCCEEEEEECCCcE
Q 001321 22 ADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1100)
Q Consensus 22 ~~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~Lls~s~d~~I 100 (1100)
..+...+.-.|--...-+|.+-.. ..++|+|+..|.||+||.-+..... +.+-...|..+..+.+|.++++.| .++|
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred Cceeeeeehhcccccccccccccc-CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceE
Confidence 333344444554444444444443 4589999999999999997665554 445566899999999999988877 6677
Q ss_pred EEEEcCC
Q 001321 101 QVWSLES 107 (1100)
Q Consensus 101 ~vWd~~s 107 (1100)
.+-|+.-
T Consensus 627 lL~d~~i 633 (776)
T COG5167 627 LLTDVPI 633 (776)
T ss_pred EEEeccc
Confidence 7777643
No 441
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=80.04 E-value=1.2e+02 Score=34.73 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=47.5
Q ss_pred CEEEEEEEeCCCEEEEEE--CCC---cEEEEEcCCCceeeee--ecCC---CeEEEEEe-cCC-CEEEEEeCCCcEEEEE
Q 001321 78 PYKNLEFLQNQGFLISIT--NDN---EIQVWSLESRSLACCL--KWES---NITAFSVI-SGS-HFMYIGDENGLMSVIK 145 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s--~d~---~I~vWd~~s~~~l~~~--~~~~---~Vt~~~~s-~~~-~~l~~G~~dG~V~Iw~ 145 (1100)
-+..+.|++++..|+..- .+. .+.+.|..+++..... ..++ .-..+.+. +++ .++.+...+|--+|+.
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 477888999987344333 222 3667788776543222 2232 23355554 444 4666667889999999
Q ss_pred EecCCCeeee
Q 001321 146 YDADEGKLFQ 155 (1100)
Q Consensus 146 ~d~~~~~l~~ 155 (1100)
++.+.+...+
T Consensus 265 ~~~~~~~~~~ 274 (353)
T PF00930_consen 265 YDLDGGKPRQ 274 (353)
T ss_dssp EETTSSEEEE
T ss_pred Ecccccceec
Confidence 9987776554
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=79.72 E-value=54 Score=40.02 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=42.4
Q ss_pred ecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecc
Q 001321 601 LVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFK 660 (1100)
Q Consensus 601 ~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~ 660 (1100)
..-..++-+.-|.-++..+|-+....+.|||.+++...|.... ...+.|.+++|+..+
T Consensus 27 T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~ 84 (631)
T PF12234_consen 27 TGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTP 84 (631)
T ss_pred cCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecC
Confidence 3344566677777777666666677899999999887655443 467899999999544
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=78.68 E-value=4.9 Score=49.06 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCcEEEeeCC--CCceeEEeeeccceeeeeecCCCCCeeEEEEee---CCCeEEEEecCceEEEEEecCCCCCcceeeec
Q 001321 504 DGSVRIWDAT--YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL 578 (1100)
Q Consensus 504 DGtIriWd~~--~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp---d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~ 578 (1100)
-|...|||+. .|.++....+. + ...-...+.-+.||| +.-++..+..+|.+++..+++... ..|+.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~-----~-~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rs 222 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVT-----P-ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR---SLFRS 222 (1283)
T ss_pred hhhhheeehHhhccccccceEEe-----e-cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH---HHHHh
Confidence 3667889875 34433222221 1 112223557777776 567888899999999999987532 11122
Q ss_pred cCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 579 ETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 579 ~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
.+.+.+..-....|+..+. ..||||..+|.+..||.|++|.+.
T Consensus 223 Hs~~~~d~a~~~~g~~~l~------------~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 223 HSQRVTDMAFFAEGVLKLA------------SLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred cCCCcccHHHHhhchhhhe------------eeCCCCcEEEEeecCCccceeeee
Confidence 1111111111122222221 179999999999999999999754
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.08 E-value=1.1e+02 Score=38.88 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=24.5
Q ss_pred ceEEEEEecceeEEEEeCCCCccccCCc
Q 001321 682 EEVIIVLFKDAKISIVGGSSENMISSSP 709 (1100)
Q Consensus 682 ~~lL~~gt~dg~v~v~d~~~g~~l~~~~ 709 (1100)
..+|+.++++|.++++|..||++|..-.
T Consensus 459 ~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 459 VPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eeEEEEECCCCEEEEEECCCCCEEeece
Confidence 3589999999999999999999987653
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.42 E-value=2.1e+02 Score=36.30 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEE---------EEEe----------------cCCCEEEEEeCCCcEE
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITA---------FSVI----------------SGSHFMYIGDENGLMS 142 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~---------~~~s----------------~~~~~l~~G~~dG~V~ 142 (1100)
+..|..++.++.|.-.|..+|+.+..+.....+.. +++- .....+++++.||.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~-- 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR-- 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe--
Confidence 46788888899999999999999888755433211 1221 13458889999995
Q ss_pred EEEEecCCCeeeeeceeeccc-ccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc----------CCEEEEEEccCCE
Q 001321 143 VIKYDADEGKLFQLPYNISAD-ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSEAQ 211 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~-~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~----------dg~V~lwdl~~~~ 211 (1100)
+.-+|..+|+.... |...+. .+.+.++... .. -..+.-.|.-.+..+++|+. +|.|+-+|+.+++
T Consensus 272 LiALDA~TGk~~W~-fg~~G~vdl~~~~g~~~--~g-~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 272 LIALDADTGKLCED-FGNNGTVDLTAGMGTTP--PG-YYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred EEEEECCCCCEEEE-ecCCCceeeecccCcCC--Cc-ccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 46677777777632 211110 0111111110 00 01122222212334777753 6899999999999
Q ss_pred EEEEe
Q 001321 212 IIFVG 216 (1100)
Q Consensus 212 ~~~~~ 216 (1100)
++-.+
T Consensus 348 l~W~~ 352 (764)
T TIGR03074 348 LVWAW 352 (764)
T ss_pred EeeEE
Confidence 87554
No 446
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=77.24 E-value=1.4e+02 Score=34.15 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=85.9
Q ss_pred EEEEECC----CeEEEEeCCC--ceEEEeCCCC-------CCEEEEEEE--e-CC-CEEEEEECCCcEEEEEcC---CC-
Q 001321 50 LAIATLD----GRIKVIGGDG--IEGLLISPSQ-------LPYKNLEFL--Q-NQ-GFLISITNDNEIQVWSLE---SR- 108 (1100)
Q Consensus 50 LA~gs~d----G~I~vw~~~~--~~~~~~~~h~-------~~V~~l~fs--~-d~-~~Lls~s~d~~I~vWd~~---s~- 108 (1100)
||+++.. ..|++|.++. ..+....... ..+-.+|+- + +| -|++....+|.+..|-+. .+
T Consensus 116 lavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~ 195 (381)
T PF02333_consen 116 LAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK 195 (381)
T ss_dssp EEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred EEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence 5666642 4799997753 3332222111 124566764 3 33 366777788998888774 33
Q ss_pred ---ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe--eeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 109 ---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK--LFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 109 ---~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~--l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
++++.+...+.+-.|.++....+||+|-++-- ||.|+.+... ....-....+..+ ...|..|+
T Consensus 196 v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G--IW~y~Aep~~~~~~~~v~~~~g~~l----------~aDvEGla 263 (381)
T PF02333_consen 196 VSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG--IWRYDAEPEGGNDRTLVASADGDGL----------VADVEGLA 263 (381)
T ss_dssp EEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE--EEEEESSCCC-S--EEEEEBSSSSB-----------S-EEEEE
T ss_pred EeeEEEEEecCCCcceEEEEecccCCEEEecCccE--EEEEecCCCCCCcceeeeccccccc----------ccCccceE
Confidence 45777788889999999999999999999974 5998874221 1111011221111 15677777
Q ss_pred eccCCCCCEEEEEEc--CCEEEEEEccCC
Q 001321 184 PHPNSSGNRVLIAYE--NALVILWDVSEA 210 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~--dg~V~lwdl~~~ 210 (1100)
.-...+++-.+++++ +++..||+....
T Consensus 264 ly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 264 LYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 644435554555554 447899998764
No 447
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=77.01 E-value=59 Score=37.47 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=80.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC------CeEEEEeCCCceEEEeCCCCC----CEEEEEEEeCCCEEEEEE-------
Q 001321 33 GIPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQL----PYKNLEFLQNQGFLISIT------- 95 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~d------G~I~vw~~~~~~~~~~~~h~~----~V~~l~fs~d~~~Lls~s------- 95 (1100)
..|+++.|+ |+|+.++++-.| |.+.+.|.++.++...-+... ---.+.+.|....++|..
T Consensus 130 s~PHT~Hcl---p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~ 206 (461)
T PF05694_consen 130 SRPHTVHCL---PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMF 206 (461)
T ss_dssp EEEEEEEE----SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHH
T ss_pred CCCceeeec---CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhc
Confidence 345666666 478888776433 678888888777664433321 123445566666666654
Q ss_pred -------------CCCcEEEEEcCCCceeeeeecC---CCeEEEEEe--cCCCEEEEEeCCCcEEEEEEec-CCCeeee-
Q 001321 96 -------------NDNEIQVWSLESRSLACCLKWE---SNITAFSVI--SGSHFMYIGDENGLMSVIKYDA-DEGKLFQ- 155 (1100)
Q Consensus 96 -------------~d~~I~vWd~~s~~~l~~~~~~---~~Vt~~~~s--~~~~~l~~G~~dG~V~Iw~~d~-~~~~l~~- 155 (1100)
-.+++.|||+.+++++.++... ....-+.|. |...+-++|+.-.+ .||.+-. ++++...
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss-~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS-SIWRFYKDDDGEWAAE 285 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--E-EEEEEEE-ETTEEEEE
T ss_pred ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccc-eEEEEEEcCCCCeeee
Confidence 2467999999999999998655 234455554 66777777776332 3455432 2333221
Q ss_pred eceeecccccccccCCC------CCCCCCeEEEEeccCCCCCE-EEEEEcCCEEEEEEccCC
Q 001321 156 LPYNISADALSEKAGFP------LLSHQPVVGVLPHPNSSGNR-VLIAYENALVILWDVSEA 210 (1100)
Q Consensus 156 ~~~~i~~~~~~~~~~~~------~~~~~~V~sv~f~P~~~g~~-ll~~~~dg~V~lwdl~~~ 210 (1100)
....++......- .+| ..-+.-|+.|..+. +.++ .++..-+|.|+-||+...
T Consensus 286 kVi~ip~~~v~~~-~lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 286 KVIDIPAKKVEGW-ILPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEE--EE--SS----GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SST
T ss_pred EEEECCCcccCcc-cccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCC
Confidence 1123432210000 000 00024578888866 3443 456667999999999874
No 448
>PHA02713 hypothetical protein; Provisional
Probab=76.06 E-value=28 Score=42.50 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCCCcEEEEEecCCc-----EEEeeCCCCcee
Q 001321 492 HSVDRVYLAGYHDGS-----VRIWDATYPVFK 518 (1100)
Q Consensus 492 s~~~~~l~Tg~~DGt-----IriWd~~~~~l~ 518 (1100)
.-++++++.|+.+|. |..||..+..-.
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 346778899987653 778887766543
No 449
>PHA02713 hypothetical protein; Provisional
Probab=75.00 E-value=94 Score=38.01 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=17.4
Q ss_pred CCCCEEEEEEcCC--cEEEEecCCCC
Q 001321 260 SSGSILAVGYIDG--DILLWNTSTTA 283 (1100)
Q Consensus 260 pdg~~l~sg~~DG--~I~lWd~~~~~ 283 (1100)
-+|...++|+.|| ++-.||+.+.+
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ECCEEEEEeeecceeehhhcCccccc
Confidence 4688888998888 56666666553
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.89 E-value=99 Score=40.46 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=28.7
Q ss_pred eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 114 ~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
+..+.....++|+|...++++|...|.|+++...
T Consensus 32 ~G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred cCCCCCCcceeeccccceEEEEEecccEEEeccc
Confidence 3455677899999999999999999999887654
No 451
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=73.76 E-value=2.1 Score=51.94 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEE-----------EEeCCCEEEEEECCCcEEEEEcC
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLE-----------FLQNQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~-----------fs~d~~~Lls~s~d~~I~vWd~~ 106 (1100)
|.-+-|-+...++..+-.+|.|+|...+..+.-+...|...++.++ .+|||..++..+.||.+++|-+.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 3444455566788888889999998877666555555877666554 57888889999999999998864
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.61 E-value=1.5e+02 Score=32.62 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred CCeEEEEEcCCCCE------------EEEEECCCeEEEEeC--CCc----eEEEe--CCCCCCEEEEEEEeC--CCEEEE
Q 001321 36 ATASILAFDHIQRL------------LAIATLDGRIKVIGG--DGI----EGLLI--SPSQLPYKNLEFLQN--QGFLIS 93 (1100)
Q Consensus 36 ~~v~~la~sp~~~l------------LA~gs~dG~I~vw~~--~~~----~~~~~--~~h~~~V~~l~fs~d--~~~Lls 93 (1100)
+.++-+.|+..+.+ ...+++||+|.=|.. +.. ..+.. .....-++.|++... +.+|..
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence 46777777765544 456789999999985 111 22222 123446788888754 567777
Q ss_pred EE-CCCcEEEEEcCCCceeee--eecC---C-----C---------eEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 94 IT-NDNEIQVWSLESRSLACC--LKWE---S-----N---------ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 94 ~s-~d~~I~vWd~~s~~~l~~--~~~~---~-----~---------Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
.. ..++|.|+|-.-.++... +..+ . . |+-..-+++...=+.|...|.|-+++.+ +++
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~---G~l 233 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN---GQL 233 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC---CcE
Confidence 76 478899998766544211 1111 0 1 1111112222222334445667676665 555
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCC----CCEEEEEEcCCEEEEEEccCCEEE
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS----GNRVLIAYENALVILWDVSEAQII 213 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~----g~~ll~~~~dg~V~lwdl~~~~~~ 213 (1100)
.+. +. +.......+.|+.-|.+- |.+|+--+.||.|..||..+++.+
T Consensus 234 ~~r---~a----------s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 234 LRR---VA----------SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred EEE---ec----------cCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 532 21 112236677887766533 554555578999999999887654
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=73.58 E-value=1.4e+02 Score=34.69 Aligned_cols=150 Identities=9% Similarity=0.070 Sum_probs=86.1
Q ss_pred EEEEeCCCEEE-EEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCC-------EEEEEeCCCcEEEEEEec--CCC
Q 001321 82 LEFLQNQGFLI-SITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSH-------FMYIGDENGLMSVIKYDA--DEG 151 (1100)
Q Consensus 82 l~fs~d~~~Ll-s~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~-------~l~~G~~dG~V~Iw~~d~--~~~ 151 (1100)
+-...+...+. .+...+.+.-.|++.|+++........| -+.+.|..+ .-++|.++..| +.+|. ...
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~sv--FrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSV--FRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccce--EEecccccCC
Confidence 33344443333 3445667888899999999888777767 777777643 34678777766 55554 222
Q ss_pred eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCC
Q 001321 152 KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSP 231 (1100)
Q Consensus 152 ~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~ 231 (1100)
++.... .. +...+ ....|..- +..| ++++|+..|-|++||--..+......
T Consensus 550 Ki~v~e--sK-dY~tK---------n~Fss~~t--TesG-yIa~as~kGDirLyDRig~rAKtalP-------------- 600 (776)
T COG5167 550 KIKVVE--SK-DYKTK---------NKFSSGMT--TESG-YIAAASRKGDIRLYDRIGKRAKTALP-------------- 600 (776)
T ss_pred ceeeee--eh-hcccc---------cccccccc--ccCc-eEEEecCCCceeeehhhcchhhhcCc--------------
Confidence 332110 00 00000 11112221 2234 59999999999999965544322110
Q ss_pred CCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 232 SEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 232 ~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+. ...|..+.- +.+|+++++.|. .+|.+-|+.
T Consensus 601 -----~l----------G~aIk~idv-ta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 601 -----GL----------GDAIKHIDV-TANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred -----cc----------ccceeeeEe-ecCCcEEEEeec-ceEEEEecc
Confidence 01 223444443 478999998886 567777764
No 454
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.12 E-value=1.3e+02 Score=31.64 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=62.8
Q ss_pred eEEEEeeCCCeE-EEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEE
Q 001321 540 STLSFCFINSSL-AVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1100)
Q Consensus 540 t~lafspd~~~L-asg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~L 618 (1100)
..|+|+.+.+.+ .+-+.+-+|.-||++-...... +.+++.+++... +. .+ -.--.+++..+|++.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s------nr~~i~dlrk~~---~~----e~-~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS------NRKVIFDLRKSQ---PF----ES-LEPDGMTIDTEGNLY 226 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCccccc------CcceeEEeccCC---Cc----CC-CCCCcceEccCCcEE
Confidence 468898877654 4555677887888654322111 111122221100 00 00 011235557788888
Q ss_pred EEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEe
Q 001321 619 AVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWT 657 (1100)
Q Consensus 619 avGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs 657 (1100)
++....|+|..+|..+++++..... -...|++.+|.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFg 262 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFG 262 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEec
Confidence 8888899999999999999976665 47789999998
No 455
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=72.73 E-value=52 Score=36.04 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=54.2
Q ss_pred cCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe------CCceEEE
Q 001321 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF------ECGRVAV 629 (1100)
Q Consensus 556 ~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs------~dG~V~v 629 (1100)
.+..|++|+.... ++...-.+..|.|++|.|..+.++++.|. ....+..
T Consensus 14 ~C~~lC~yd~~~~-------------------------qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~ 68 (281)
T PF12768_consen 14 PCPGLCLYDTDNS-------------------------QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLAT 68 (281)
T ss_pred CCCEEEEEECCCC-------------------------EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEE
Confidence 3567999998775 23333345788999999998888888875 5678899
Q ss_pred EecCCceEEEEeecC-CCCCCCeEEEEEe
Q 001321 630 LDMNLLSVLFFTDDI-SGSSSPIISMTWT 657 (1100)
Q Consensus 630 wD~~~~~~~~~~~~~-~~~~~~V~sl~fs 657 (1100)
||..+.+..-..... ...+++|+.+.+.
T Consensus 69 yd~~~~~w~~~~~~~s~~ipgpv~a~~~~ 97 (281)
T PF12768_consen 69 YDFKNQTWSSLGGGSSNSIPGPVTALTFI 97 (281)
T ss_pred EecCCCeeeecCCcccccCCCcEEEEEee
Confidence 999988764111111 1246889999886
No 456
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=68.76 E-value=1.6e+02 Score=37.64 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=53.1
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
..+...|+|+|.+.+ .|++....|...||++........ ..+... ....| .+..+..+......+
T Consensus 145 g~~~aDv~FnP~~~~-q~AiVD~~G~Wsvw~i~~~~~~~~---~~~~~~----------~~~~g-si~~d~~e~s~w~rI 209 (765)
T PF10214_consen 145 GFPHADVAFNPWDQR-QFAIVDEKGNWSVWDIKGRPKRKS---SNLRLS----------RNISG-SIIFDPEELSNWKRI 209 (765)
T ss_pred CCccceEEeccCccc-eEEEEeccCcEEEEEeccccccCC---cceeec----------cCCCc-cccCCCcccCcceee
Confidence 357899999998666 599999999999999932211000 000000 00011 111111223556678
Q ss_pred EEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 256 CWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+|. ++-..|+++. ...+.++|+.+.
T Consensus 210 ~W~-~~~~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 210 LWV-SDSNRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred Eec-CCCCEEEEEc-CCceEEEECCCC
Confidence 996 6666666654 456888898765
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.68 E-value=2.3e+02 Score=32.88 Aligned_cols=150 Identities=8% Similarity=0.047 Sum_probs=74.6
Q ss_pred EEEEEeCCCEEEEEECCCcE-EEEEcCCCc-eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee-c
Q 001321 81 NLEFLQNQGFLISITNDNEI-QVWSLESRS-LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL-P 157 (1100)
Q Consensus 81 ~l~fs~d~~~Lls~s~d~~I-~vWd~~s~~-~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~-~ 157 (1100)
.+..++|+.+++ ++..|.+ +-||--... ..........++++.+.+++.+++++ ..|.+ +|..+. +..-.. .
T Consensus 243 ~v~~~~dG~~~~-vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~--G~~~~~~~ 317 (398)
T PLN00033 243 TVNRSPDGDYVA-VSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGT--GLTEEDFD 317 (398)
T ss_pred eEEEcCCCCEEE-EECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCC--CCcccccc
Confidence 344556654444 4444433 334432211 11222344678999999998888776 45544 233222 211000 0
Q ss_pred e-eecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCC
Q 001321 158 Y-NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDS 236 (1100)
Q Consensus 158 ~-~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 236 (1100)
+ .++.. .....+.++.|.+ +++ +++++.+|.+... .+.++.-....- ..
T Consensus 318 f~~~~~~----------~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s-~D~G~tW~~~~~---------------~~- 367 (398)
T PLN00033 318 FEEADIK----------SRGFGILDVGYRS--KKE-AWAAGGSGILLRS-TDGGKSWKRDKG---------------AD- 367 (398)
T ss_pred eeecccC----------CCCcceEEEEEcC--CCc-EEEEECCCcEEEe-CCCCcceeEccc---------------cC-
Confidence 0 01100 0114588999944 676 8888888875443 444443221100 00
Q ss_pred ccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEE
Q 001321 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1100)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lW 277 (1100)
.-...+..+.|. ++++ ....+.+|.|.-|
T Consensus 368 ----------~~~~~ly~v~f~-~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 368 ----------NIAANLYSVKFF-DDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ----------CCCcceeEEEEc-CCCc-eEEEeCCcEEEEe
Confidence 003456678865 4444 5566678888766
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.96 E-value=2.9e+02 Score=34.06 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=47.2
Q ss_pred cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCC
Q 001321 602 VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPA 681 (1100)
Q Consensus 602 h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1100)
..+++-.+-||.+.. |.+-..+|+++||++.+-.+-...-........|....|...|
T Consensus 82 ~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--------------------- 139 (829)
T KOG2280|consen 82 KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--------------------- 139 (829)
T ss_pred cCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc---------------------
Confidence 345888999998886 5555689999999998765542100111123344444444322
Q ss_pred ceEEEEEecceeEEEEeCCC
Q 001321 682 EEVIIVLFKDAKISIVGGSS 701 (1100)
Q Consensus 682 ~~lL~~gt~dg~v~v~d~~~ 701 (1100)
+++-+.+|.|.......
T Consensus 140 ---Vavlt~~g~v~~i~~~~ 156 (829)
T KOG2280|consen 140 ---VAVLTVSGQVILINGVE 156 (829)
T ss_pred ---eEEEecCCcEEEEcCCC
Confidence 77788888888877433
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.11 E-value=2.5e+02 Score=32.38 Aligned_cols=113 Identities=12% Similarity=0.089 Sum_probs=71.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeC----CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee---
Q 001321 39 SILAFDHIQRLLAIATLDGRIKVIGG----DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--- 111 (1100)
Q Consensus 39 ~~la~sp~~~lLA~gs~dG~I~vw~~----~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l--- 111 (1100)
+.+-||-..+.|...+. |.+.=|-. +.+-.-+-...+++|.++.|++|.+.|+.--.+++|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 44667766665554443 44444433 22333345556779999999999888888889999999998433211
Q ss_pred -eee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 112 -CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 112 -~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
... .-...|..+.|.... -+|.-...| |-++..+.+.+.+.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslR 147 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLR 147 (657)
T ss_pred HHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhh
Confidence 111 222458999998774 455555555 56777766544443
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=64.94 E-value=24 Score=25.56 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=28.1
Q ss_pred eCCCEEEEEE-CCCcEEEEEcCCCceeeeeecCCCeEEEEE
Q 001321 86 QNQGFLISIT-NDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1100)
Q Consensus 86 ~d~~~Lls~s-~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~ 125 (1100)
|++++|..++ .+++|.++|..+++.+..+.....-..+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4667777665 478999999999988887755444444443
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.43 E-value=70 Score=38.62 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
....++++.-.|.+.-++.|..||.|++|+......--+.+...|-..+.|.+.| |+++.+|..+.-|--.. .+...
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg-vvqqq 89 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKEDG-VVQQQ 89 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeeccC-cchhh
Confidence 3446778888899999999999999999998332222222334466778888888 88888898888886432 21111
Q ss_pred e----ecCCCeEEEEEecCCCE
Q 001321 114 L----KWESNITAFSVISGSHF 131 (1100)
Q Consensus 114 ~----~~~~~Vt~~~~s~~~~~ 131 (1100)
+ +.+....++..+|..+-
T Consensus 90 fdyndqsekefss~~cdptaqn 111 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQN 111 (1636)
T ss_pred ccccchhhhhccceecCchhhh
Confidence 1 22334555555665543
No 462
>PRK13615 lipoprotein LpqB; Provisional
Probab=63.78 E-value=3.4e+02 Score=33.02 Aligned_cols=143 Identities=12% Similarity=0.032 Sum_probs=81.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC-Cceeee-e--
Q 001321 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACC-L-- 114 (1100)
Q Consensus 39 ~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s-~~~l~~-~-- 114 (1100)
.++|.++++..+|.-..++.++++...+....... ....+.-.|.+++ .+=++..++..++..... +..... .
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~~ 413 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVSW 413 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeeccc
Confidence 67899999999998887888888877644333322 2235555677765 444444433444444322 333211 1
Q ss_pred ecCCCeEEEEEecCCCEEEEEeC---CCcEEEEEEecCCCeeeeeceee-cccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 115 KWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNI-SADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~---dG~V~Iw~~d~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
...+.|+.+.+++++-+++.-.+ .+.|.|--+....+. |+.+ ..-. + .. .....+.++.|.. ++
T Consensus 414 ~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~----P~~L~~~p~--~---l~-~~l~~v~sl~W~~--~~ 481 (557)
T PRK13615 414 TATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGV----PTSLTTTPL--E---LL-ASPGTPLDATWVD--EL 481 (557)
T ss_pred cCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCc----ceEeeeccE--E---cc-cCcCcceeeEEcC--CC
Confidence 22358999999999987765432 466776555543221 2223 1100 0 00 1125799999944 67
Q ss_pred CEEEEE
Q 001321 191 NRVLIA 196 (1100)
Q Consensus 191 ~~ll~~ 196 (1100)
+.++.+
T Consensus 482 ~laVl~ 487 (557)
T PRK13615 482 DVATLT 487 (557)
T ss_pred EEEEEe
Confidence 643443
No 463
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=63.69 E-value=2.4e+02 Score=31.32 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=45.2
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECC-CcEEEEEc
Q 001321 43 FDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITND-NEIQVWSL 105 (1100)
Q Consensus 43 ~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d-~~I~vWd~ 105 (1100)
++.+|++|+.||++|--.+. .+.. .......+..+|+.+...+..+.|++.+.. ..++++|+
T Consensus 9 ~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred cccCCcEEEEEeCCceEEEE-cccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 34455789999999965555 5432 344455566689999999988888888743 34999998
No 464
>PHA03098 kelch-like protein; Provisional
Probab=63.11 E-value=2.7e+02 Score=33.83 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=14.0
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCCce
Q 001321 87 NQGFLISITND-----NEIQVWSLESRSL 110 (1100)
Q Consensus 87 d~~~Lls~s~d-----~~I~vWd~~s~~~ 110 (1100)
++...+.++.+ +.+..||..+++-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 43444445443 3578888877653
No 465
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=62.97 E-value=1.9e+02 Score=33.19 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=34.2
Q ss_pred CEEEEEEEeCCCEEEEEE-----------CC-CcEEEEEcCC--Ccee--eee-ecCCCeEEEEEecCCCEEEEEeCCC
Q 001321 78 PYKNLEFLQNQGFLISIT-----------ND-NEIQVWSLES--RSLA--CCL-KWESNITAFSVISGSHFMYIGDENG 139 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s-----------~d-~~I~vWd~~s--~~~l--~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG 139 (1100)
....|+|.++|...++-. .. +.|.+++-.. ++.- ..+ ..-...+.+++.+++ |+++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 456778888876555542 12 2677776542 3321 222 222346888998888 66665553
No 466
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=61.66 E-value=3.8e+02 Score=32.88 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=54.6
Q ss_pred cCCCCEEEEEECC------CeEEEEeCCCceEEE--eCCCCCCEEEEEEEeCCCEEEEEECC------CcEEEEEcCCCc
Q 001321 44 DHIQRLLAIATLD------GRIKVIGGDGIEGLL--ISPSQLPYKNLEFLQNQGFLISITND------NEIQVWSLESRS 109 (1100)
Q Consensus 44 sp~~~lLA~gs~d------G~I~vw~~~~~~~~~--~~~h~~~V~~l~fs~d~~~Lls~s~d------~~I~vWd~~s~~ 109 (1100)
+..+.++++|+.+ ..+..||....+... ..++...-..+++..+ ..-++|+.+ +++..+|..+.+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC-EEEEEccccCCCcccceEEEecCCCCc
Confidence 4456777888777 367788876554433 3344445566666666 455556666 357788887776
Q ss_pred eeeeeecCCCeEEEEE-ecCCCEEEEEeCCCc
Q 001321 110 LACCLKWESNITAFSV-ISGSHFMYIGDENGL 140 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~-s~~~~~l~~G~~dG~ 140 (1100)
-.........=..+.+ .-++..-++|+.+|.
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE 392 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccc
Confidence 3332222221112222 235666778888874
No 467
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=61.57 E-value=2.6e+02 Score=34.33 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=53.4
Q ss_pred CCCEEEEEECCC-----cEEEEEcCCCceeeeeecCCCeEEEEEe-cCCCEEEEEeCCCcE----EEEEEecCCCeeeee
Q 001321 87 NQGFLISITNDN-----EIQVWSLESRSLACCLKWESNITAFSVI-SGSHFMYIGDENGLM----SVIKYDADEGKLFQL 156 (1100)
Q Consensus 87 d~~~Lls~s~d~-----~I~vWd~~s~~~l~~~~~~~~Vt~~~~s-~~~~~l~~G~~dG~V----~Iw~~d~~~~~l~~~ 156 (1100)
+|..-+.++.|| +|..||..+.+--...........+++- -++..-++|+.+|.- .+-.||..+++...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~- 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL- 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee-
Confidence 334445555554 4888998877544333333333333333 345555667655543 23335544444332
Q ss_pred ceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC-----EEEEEEccCCEEE
Q 001321 157 PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEAQII 213 (1100)
Q Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg-----~V~lwdl~~~~~~ 213 (1100)
++.-. .++. ....... ++..+++|+.++ .|..||..+.+-.
T Consensus 459 ---~~~M~------~~R~---~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 459 ---IAPMN------TRRS---GFGVAVL----NGKIYVVGGFDGTSALSSVERYDPETNQWT 504 (571)
T ss_pred ---cCCcc------cccc---cceEEEE----CCEEEEECCccCCCccceEEEEcCCCCcee
Confidence 11110 1111 1112222 466677888776 3566777666543
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.47 E-value=96 Score=39.41 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=49.3
Q ss_pred EEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEE
Q 001321 542 LSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVG 621 (1100)
Q Consensus 542 lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavG 621 (1100)
+++..-++.|.+|+.+|++.+|.+..........+. .+...... ..++.+|+.|...+.-.++.+=
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~------------~~~~~~~~--~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELV------------TETVKFEK--EFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhh------------cchhHHhh--hhccchhHHHhhcchhcchhee
Confidence 455567889999999999999999876432111000 00000011 1226788888777766544444
Q ss_pred eCCceEEEEecCCceEE
Q 001321 622 FECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 622 s~dG~V~vwD~~~~~~~ 638 (1100)
.|+.+.++++...+..
T Consensus 86 -~dsqi~~~~l~~~~~~ 101 (877)
T KOG2063|consen 86 -SDSQIAVHKLPELEPV 101 (877)
T ss_pred -cCCcceeeecCccccc
Confidence 3566888887765543
No 469
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.46 E-value=11 Score=27.16 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=21.7
Q ss_pred EEEEEecceeEEEEeCCCCccccCC
Q 001321 684 VIIVLFKDAKISIVGGSSENMISSS 708 (1100)
Q Consensus 684 lL~~gt~dg~v~v~d~~~g~~l~~~ 708 (1100)
.+++++.+|.|..+|..||+++-.-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEee
Confidence 3788899999999999999988654
No 470
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=58.65 E-value=23 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEe
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIG 63 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~ 63 (1100)
.|.|+|.. ++++|+++..+.+|||.
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEecC
Confidence 57777776 56999999999999984
No 471
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=58.60 E-value=3.5e+02 Score=34.55 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=93.4
Q ss_pred EEEEEECCCcEEEEEcC-CCceeeee--------ecCCCeEEEEEe--cCCCEEEEEe-C--CCcEEEEEEecCCC--ee
Q 001321 90 FLISITNDNEIQVWSLE-SRSLACCL--------KWESNITAFSVI--SGSHFMYIGD-E--NGLMSVIKYDADEG--KL 153 (1100)
Q Consensus 90 ~Lls~s~d~~I~vWd~~-s~~~l~~~--------~~~~~Vt~~~~s--~~~~~l~~G~-~--dG~V~Iw~~d~~~~--~l 153 (1100)
-++++...|.|.+|=.+ +.+..... .....|+..++. .+++.+++.. . .+.|+++.+..+-+ +.
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 37777888889988773 23322221 123456666555 4454444443 3 58888888765433 11
Q ss_pred eeeceeecccccccccCC--------------CCCCCCCeEEEEecc----CCCCCEEEEEEc-----CCEEEEEEccCC
Q 001321 154 FQLPYNISADALSEKAGF--------------PLLSHQPVVGVLPHP----NSSGNRVLIAYE-----NALVILWDVSEA 210 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~--------------~~~~~~~V~sv~f~P----~~~g~~ll~~~~-----dg~V~lwdl~~~ 210 (1100)
...+-..|.-.+...... +......++.+.|-| .+....++++++ ...|.-|.+.+.
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 100000111111100000 011234677777765 333434666665 446888998775
Q ss_pred EEEEEecCCcccccccccCCCCCCCCccccCC--------CCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 211 QIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI--------SEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~--------~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.... |..++ ++ +.....+... -.+....+.|.+++-. .-+..++..+.||+|.+.|..+-
T Consensus 224 ~~~l---h~~F~---ql-----~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~-~~~~~v~~~~~DGsI~~~dr~t~ 291 (753)
T PF11635_consen 224 QQPL---HPAFQ---QL-----GSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP-ELDIVVAFAFSDGSIEFRDRNTM 291 (753)
T ss_pred Cccc---chhhh---hc-----CCCCcCCCCCCCceeEEEecccccCCeEEEEEec-ccCcEEEEEEcCCeEEEEecCcc
Confidence 4211 10000 01 1111111110 0122237889999854 66778999999999999998765
Q ss_pred C
Q 001321 283 A 283 (1100)
Q Consensus 283 ~ 283 (1100)
+
T Consensus 292 ~ 292 (753)
T PF11635_consen 292 K 292 (753)
T ss_pred h
Confidence 3
No 472
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=58.43 E-value=1.3e+02 Score=34.05 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce--EEEe-----CCCCCCEEEEEEEeC---CCEE-EEEECC--------
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE--GLLI-----SPSQLPYKNLEFLQN---QGFL-ISITND-------- 97 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~--~~~~-----~~h~~~V~~l~fs~d---~~~L-ls~s~d-------- 97 (1100)
.+..|+|.|++++++ +...|+|++++.++.. .+.. .........++|.|+ .++| ++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987765 5779999999965443 2222 223457899999994 2333 333321
Q ss_pred CcEEEEEcCCC-------c-eeeeeec----CCCeEEEEEecCCCEEEEEe
Q 001321 98 NEIQVWSLESR-------S-LACCLKW----ESNITAFSVISGSHFMYIGD 136 (1100)
Q Consensus 98 ~~I~vWd~~s~-------~-~l~~~~~----~~~Vt~~~~s~~~~~l~~G~ 136 (1100)
..|.-|.+..+ + ++..... ...-..|+|.|++ +|+++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~ 131 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSV 131 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEE
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEe
Confidence 24555555443 1 1222222 1345678888888 444443
No 473
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.89 E-value=98 Score=40.35 Aligned_cols=154 Identities=14% Similarity=0.187 Sum_probs=84.1
Q ss_pred ECCCeEEEEeCCC-ceEEEeCCCCCCEEEEE--------EEeCCCEEEEEECCCcEEEEEcCCCc-------eeeee---
Q 001321 54 TLDGRIKVIGGDG-IEGLLISPSQLPYKNLE--------FLQNQGFLISITNDNEIQVWSLESRS-------LACCL--- 114 (1100)
Q Consensus 54 s~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~--------fs~d~~~Lls~s~d~~I~vWd~~s~~-------~l~~~--- 114 (1100)
|.|+.+.+|+... .+....-+-...|..|. |.|.-++|+.+.+--.|.++-+.-.+ ....+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 5689999999954 44443333333343333 44555778888777777776553221 11222
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec--eeecccccc---c-ccCCCCCCCCCeEEEEeccCC
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP--YNISADALS---E-KAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~--~~i~~~~~~---~-~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.....|+|+....+|+ ++.|+.||.|+=.-|....+-+.... +.+....+. . ...++..+.++|..|.. ..
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I--D~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI--DN 252 (1311)
T ss_pred cCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe--cc
Confidence 1234688888555555 45555666554444554333222100 001100000 0 00111233478999988 43
Q ss_pred CCCEEEEEEcCCEEEEEEccCC
Q 001321 189 SGNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
....+++-++.|+|.+||+.+.
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccceeeeeccCceEEEEEccCC
Confidence 4556888899999999999883
No 474
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=57.18 E-value=2.8e+02 Score=29.98 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=91.8
Q ss_pred eEEEeCCCCC--CEEEEEEEeCCCEEEEEECCC--cEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEE-EEeCCCcEE
Q 001321 68 EGLLISPSQL--PYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMS 142 (1100)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~Lls~s~d~--~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~-~G~~dG~V~ 142 (1100)
+++...+|.. -...+.|..++.++-|.+.-| .|+.+|+.+++.+.....+....+=-...-++.++ ..=.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 4444555544 467888988877777777654 69999999999888776664332111111133333 334567665
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccc
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~ 222 (1100)
+|+.+ +-+.... +.+++ .=++++. +++.|+.+..+..+..+|-.+-+......-++
T Consensus 114 ~yd~~--tl~~~~~-~~y~~---------------EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-- 169 (264)
T PF05096_consen 114 VYDPN--TLKKIGT-FPYPG---------------EGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-- 169 (264)
T ss_dssp EEETT--TTEEEEE-EE-SS---------------S--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--
T ss_pred EEccc--cceEEEE-EecCC---------------cceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEE--
Confidence 55543 2233321 33442 2355554 67778888888899999987765433221100
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
.| ..-..+.-+-|. +|...+=......|..-|..+|.
T Consensus 170 ---------------~g-------~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 170 ---------------NG-------RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp ---------------TT-------EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-B
T ss_pred ---------------CC-------EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCe
Confidence 00 003345556665 67767777777778888888874
No 475
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=57.13 E-value=5.4e+02 Score=33.21 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=77.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-Cce---EEEeCCCCCCEEEEEEEeCC------CEEEEEECCCcEEEE
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGD-GIE---GLLISPSQLPYKNLEFLQNQ------GFLISITNDNEIQVW 103 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~~---~~~~~~h~~~V~~l~fs~d~------~~Lls~s~d~~I~vW 103 (1100)
.|..+..+.-.-.+..++++..+|.+.-|-.+ ..+ ......-..-|.|+++.++. ++|+.++.|+.+++.
T Consensus 536 ~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vrii 615 (1205)
T KOG1898|consen 536 TPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRII 615 (1205)
T ss_pred CCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEE
Confidence 35554444444446778888888888777663 222 22223345579999998865 568888999999999
Q ss_pred EcCCCceeeee---ecCCCeEEEEEec---CC------CEEEEEeCCCcEEEEEEecCCCeeee
Q 001321 104 SLESRSLACCL---KWESNITAFSVIS---GS------HFMYIGDENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 104 d~~s~~~l~~~---~~~~~Vt~~~~s~---~~------~~l~~G~~dG~V~Iw~~d~~~~~l~~ 155 (1100)
.+.-...+..+ ..+.++.++.+-+ .+ -++.+|.++|.+.=..+|.-.|.+..
T Consensus 616 sL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d 679 (1205)
T KOG1898|consen 616 SLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLD 679 (1205)
T ss_pred EecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceee
Confidence 99866555555 3334444444432 22 26789999996644445655565543
No 476
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=57.03 E-value=68 Score=39.21 Aligned_cols=98 Identities=11% Similarity=-0.072 Sum_probs=50.7
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcc-ee-eeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcC----CCCEEE
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKN-FL-FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTS----SGAKLA 619 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~-~~-~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp----~g~~La 619 (1100)
++...|+++..||.+...+......... .. ......+....+....... ...-....+.+.+++++. +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWS-YRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT----SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcc-cccCCCCCCccceEEEecceeCCCCEEE
Confidence 5788999999999999988876321100 00 0000000001111111111 111112234556666666 667899
Q ss_pred EEeCCceEEEEecCCceEEEEeecC
Q 001321 620 VGFECGRVAVLDMNLLSVLFFTDDI 644 (1100)
Q Consensus 620 vGs~dG~V~vwD~~~~~~~~~~~~~ 644 (1100)
+-+.|+++++||+.++.++......
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEeCCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999999998776654
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.69 E-value=3.6e+02 Score=35.53 Aligned_cols=179 Identities=13% Similarity=0.138 Sum_probs=82.7
Q ss_pred cCCCCcEEEEEecCCcEEEeeCCC-CceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCC
Q 001321 491 CHSVDRVYLAGYHDGSVRIWDATY-PVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSL 569 (1100)
Q Consensus 491 ~s~~~~~l~Tg~~DGtIriWd~~~-~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~ 569 (1100)
|.+-++.-+| -|..+.+|+... +.+...-.+...+..+.+-..... .|-|.=++|.+-.+--.|.|+-+....
T Consensus 87 FpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpg----vFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 87 FPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPG----VFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred chhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCC----cchhhhheeEEecccceEEEEEEEecc
Confidence 3444444443 578899999987 443322222222222211111111 245555666666666678888776542
Q ss_pred CCcce-eeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC-CC
Q 001321 570 DAKNF-LFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS-GS 647 (1100)
Q Consensus 570 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~-~~ 647 (1100)
..... .|. ...........|+++....+|+ +..|+.||.|+=+-.....-.|...+.. .+
T Consensus 161 ~~~~~~~f~-----------------~~~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 161 FTGELSIFN-----------------TSFKISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred ccCcccccc-----------------cceeeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccC
Confidence 11110 000 0011223355688899888997 5555567744332222211111110000 01
Q ss_pred CCCeEEEEEeecccCccccCCC---CCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 648 SSPIISMTWTEFKNTHSLAKNP---NHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 648 ~~~V~sl~fs~~~~~~~~~~~~---~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
+..+.+.-.-. ...-| ..-....+++.+..+|++-+.-|.|.+||.
T Consensus 223 t~s~ls~lvPs------~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 223 TKSVLSSLVPS------LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred chhHHHHhhhh------hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEc
Confidence 11111000000 00011 111222334566789999999999999993
No 478
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=53.54 E-value=4.6e+02 Score=31.33 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCe----EEEEEecCCC
Q 001321 55 LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNI----TAFSVISGSH 130 (1100)
Q Consensus 55 ~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~V----t~~~~s~~~~ 130 (1100)
..+.+.++|..+.-+-...........+.+.+||.+++... +.+..+|+..+ .+..+..++.- ..+...|+|+
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCCC
Confidence 34666666666654332222111111166778876665444 88888898644 44444444322 4566778888
Q ss_pred EEEEEeC-------C-----CcEEEEEEecCCCeeeeeceeeccccccccc--------C-----CCCCCCCCeEEEEec
Q 001321 131 FMYIGDE-------N-----GLMSVIKYDADEGKLFQLPYNISADALSEKA--------G-----FPLLSHQPVVGVLPH 185 (1100)
Q Consensus 131 ~l~~G~~-------d-----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~--------~-----~~~~~~~~V~sv~f~ 185 (1100)
+|+.+.. . +. .|..++ .+|++... +.+..|--.... . ....+=-.+.+|.+.
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~-wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWE-WDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEE-EEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred EEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEE-EehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 8777762 0 00 123344 34444432 322222100000 0 011111358999997
Q ss_pred cCCCCCEEEEEEcCC-EEEEEEccCCEEEEEecC
Q 001321 186 PNSSGNRVLIAYENA-LVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg-~V~lwdl~~~~~~~~~~~ 218 (1100)
|. ++. |++++..- .|...|..++++.-..+.
T Consensus 280 ~~-dd~-iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 280 PS-DDS-IIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TT-TTE-EEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CC-CCe-EEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 75 333 77777766 888888889999887765
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=52.98 E-value=4.5e+02 Score=33.63 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=76.1
Q ss_pred CCCCCEEEEEEE---e---CCCEEEEEECCCcEEEEEcCCCc---------------eeeeeec----CCCeEEEEEecC
Q 001321 74 PSQLPYKNLEFL---Q---NQGFLISITNDNEIQVWSLESRS---------------LACCLKW----ESNITAFSVISG 128 (1100)
Q Consensus 74 ~h~~~V~~l~fs---~---d~~~Lls~s~d~~I~vWd~~s~~---------------~l~~~~~----~~~Vt~~~~s~~ 128 (1100)
.-..||+.|+|. . ....++.+=....+.|....-.+ .+..+.+ ......++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 667899999999 2 22246667677778888722111 2222221 236788999986
Q ss_pred C-CEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccccc-CCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEE
Q 001321 129 S-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKA-GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 129 ~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwd 206 (1100)
. ..+|+-+..|...||++........ ..+.+..+. ...+ ..+ ...+....|.|.+ +.+.|++...... .++|
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~-~~~~~~~~~-~gsi~~d~-~e~s~w~rI~W~~--~~~~lLv~~r~~l-~~~d 230 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKS-SNLRLSRNI-SGSIIFDP-EELSNWKRILWVS--DSNRLLVCNRSKL-MLID 230 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCC-cceeeccCC-CccccCCC-cccCcceeeEecC--CCCEEEEEcCCce-EEEE
Confidence 4 6899999999999999932111111 011122111 1111 111 1124556788854 4554555555544 7888
Q ss_pred ccCCEE
Q 001321 207 VSEAQI 212 (1100)
Q Consensus 207 l~~~~~ 212 (1100)
+.+...
T Consensus 231 ~~~~~~ 236 (765)
T PF10214_consen 231 FESNWQ 236 (765)
T ss_pred CCCCCc
Confidence 887755
No 480
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=51.66 E-value=2.6e+02 Score=32.50 Aligned_cols=40 Identities=13% Similarity=-0.020 Sum_probs=24.0
Q ss_pred CcCeEEEEEcCCCCEEEEEe-CCceEEEEecCC---ceEEEEee
Q 001321 603 NSPVRALQFTSSGAKLAVGF-ECGRVAVLDMNL---LSVLFFTD 642 (1100)
Q Consensus 603 ~~~VtsLafSp~g~~LavGs-~dG~V~vwD~~~---~~~~~~~~ 642 (1100)
..-||.+.+|.|.++|-+.. -+|.|+.||+.. |++..++.
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~ 354 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVF 354 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEE
Confidence 56689999999999998765 689999999976 45555544
No 481
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=51.23 E-value=20 Score=24.53 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=20.3
Q ss_pred EEEEEecceeEEEEeCCCCcccc
Q 001321 684 VIIVLFKDAKISIVGGSSENMIS 706 (1100)
Q Consensus 684 lL~~gt~dg~v~v~d~~~g~~l~ 706 (1100)
.+++++.+|.+..+|..+|+++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 58999999999999999988764
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.20 E-value=91 Score=36.40 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCeeEEEEeeCCCeEEEEecCceEEEEE---ecCCCCCcceeeeccCCCceeeccCCCcceeEEE------E-eecCcCe
Q 001321 537 APVSTLSFCFINSSLAVGNEFGLVYIYN---LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAV------F-SLVNSPV 606 (1100)
Q Consensus 537 ~~Vt~lafspd~~~Lasg~~dG~V~lw~---l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~-~~h~~~V 606 (1100)
..|..+..++.|..++..+-+|.+.++- |..+.... +++.. ..|... | ....-.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~e------Dgk~~---------v~CRt~~i~~~~ftss~~ltl 168 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFE------DGKST---------VNCRTTPVAERFFTSSTSLTL 168 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceec------CCCce---------EEEEeecccceeeccCCceee
Confidence 3678888999999999999999888887 44332110 00000 011110 1 1122345
Q ss_pred EEEEEcCCC---CEEEEEeCCceEEEEecCCceEEEEeecCCC
Q 001321 607 RALQFTSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDDISG 646 (1100)
Q Consensus 607 tsLafSp~g---~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~ 646 (1100)
...+|+|++ ..|.+=+.|..|+|||+..++-+|......+
T Consensus 169 ~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepg 211 (741)
T KOG4460|consen 169 KQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPG 211 (741)
T ss_pred eeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence 678899976 5788888899999999999988877665554
No 483
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=51.17 E-value=3.7e+02 Score=29.46 Aligned_cols=164 Identities=12% Similarity=0.193 Sum_probs=90.4
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC---CceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcE
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD---GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~---~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I 100 (1100)
..+..+.|+| ..+++++..-+-.+++.|-.=-..-+|+.. ....+....-..-+..+.|+.+ +...+..+.-+
T Consensus 33 v~~~~vghfg--~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~--yvyvad~ssGL 108 (370)
T COG5276 33 VGYAYVGHFG--KGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE--YVYVADWSSGL 108 (370)
T ss_pred cceEEeeecc--CCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc--EEEEEcCCCce
Confidence 4466677776 667777766555554444322222344442 1122223333445677777765 45566677779
Q ss_pred EEEEcCCCc---eeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001321 101 QVWSLESRS---LACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 101 ~vWd~~s~~---~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
+|.|+.+-. ++..+...+--.++.+ .++|.++.+ .+| .-+.++.........-.|..++
T Consensus 109 ~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddg-fLivdvsdpssP~lagrya~~~-------------- 171 (370)
T COG5276 109 RIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPG-------------- 171 (370)
T ss_pred EEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCC--------------
Confidence 999997653 3333333344445444 588999998 455 4466654322222111133332
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
..-..++. .|++-..++.|+-+.+-|+....-
T Consensus 172 ~d~~~v~I----SGn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 172 GDTHDVAI----SGNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred CCceeEEE----ecCeEEEEEeCCCeEEEEccCCCC
Confidence 22244555 366677777777778999887643
No 484
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=50.96 E-value=65 Score=23.20 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=23.1
Q ss_pred CCCCEEEEEe-CCceEEEEecCCceEEEEeec
Q 001321 613 SSGAKLAVGF-ECGRVAVLDMNLLSVLFFTDD 643 (1100)
Q Consensus 613 p~g~~LavGs-~dG~V~vwD~~~~~~~~~~~~ 643 (1100)
|++++|.++. .+++|.++|..+.+++.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677676655 588999999998888755443
No 485
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=49.50 E-value=4.6e+02 Score=30.13 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=83.0
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEe----CCCE--EEEEEC-C---CcEEEEEcC--CCcee
Q 001321 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQ----NQGF--LISITN-D---NEIQVWSLE--SRSLA 111 (1100)
Q Consensus 44 sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~----d~~~--Lls~s~-d---~~I~vWd~~--s~~~l 111 (1100)
+|.++++.....++-+.+||+++.++..... +.+..+..-. +|+. |+.++. + ++|++|-+. ++.+.
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3667888888888999999999998876632 3344443322 3332 344442 2 569999775 44433
Q ss_pred eeeecC-------CCeEEEEE--ecC-CC-EEEEEeCCCcEEEEEEec-CCCeeeee---ceeecccccccccCCCCCCC
Q 001321 112 CCLKWE-------SNITAFSV--ISG-SH-FMYIGDENGLMSVIKYDA-DEGKLFQL---PYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 112 ~~~~~~-------~~Vt~~~~--s~~-~~-~l~~G~~dG~V~Iw~~d~-~~~~l~~~---~~~i~~~~~~~~~~~~~~~~ 176 (1100)
...... ..+..+++ ++. +. ++++...+|.+.-|.+.. ..+.+... .|.++
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--------------- 207 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--------------- 207 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S---------------
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC---------------
Confidence 221111 23555655 443 33 677888899888888764 34443311 12222
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
..+.++.. .+...+|+++=++.-|.-|+.+
T Consensus 208 sQ~EGCVV--DDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 208 SQPEGCVV--DDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp S-EEEEEE--ETTTTEEEEEETTTEEEEEESS
T ss_pred CcceEEEE--ecccCCEEEecCccEEEEEecC
Confidence 45777777 4455569999999887777665
No 486
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.36 E-value=2.6e+02 Score=35.72 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=47.2
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCCceEE----E-------e-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGL----L-------I-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 41 la~sp~~~lLA~gs~dG~I~vw~~~~~~~~----~-------~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
+++..-|+.|.+||.||.+++|.......- . . .-++.||..+...+.-.+|++.+ |+.|.+.++..-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~-dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILS-DSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheec-CCcceeeecCcc
Confidence 444455899999999999999987433111 1 1 11356888888888766666665 777888887665
Q ss_pred ce
Q 001321 109 SL 110 (1100)
Q Consensus 109 ~~ 110 (1100)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 54
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=47.35 E-value=2.8e+02 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
..|.+|...+. ...+++...+|.|.+|++..+
T Consensus 190 ~~I~~v~~d~~--r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPS--RRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETT--TTEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCC--cCEEEEEeCCCcEEEEEEeCC
Confidence 34999999664 467999999999999999853
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=47.29 E-value=74 Score=32.08 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=26.1
Q ss_pred cCeEEEEEcCCC------CEEEEEeCCceEEEEecCC
Q 001321 604 SPVRALQFTSSG------AKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 604 ~~VtsLafSp~g------~~LavGs~dG~V~vwD~~~ 634 (1100)
..|.+++|||.| -+||+-+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999966 3788999999999998764
No 489
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=45.19 E-value=4.5e+02 Score=28.80 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=63.8
Q ss_pred EEEEEecCCcEEEeeCCCCceeE-EeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCccee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKL-ICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~-~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1100)
+...+.++.-++|.|++++.--. +-.++ +. + .+-.+.-.|+++-++..+.-..++|+.+.+
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~ln-------t~---g--yaygv~vsGn~aYVadlddgfLivdvsdps------ 159 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLN-------TD---G--YAYGVYVSGNYAYVADLDDGFLIVDVSDPS------ 159 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceecccc-------CC---c--eEEEEEecCCEEEEeeccCcEEEEECCCCC------
Confidence 33445566679999999876220 00000 10 1 122334468888888855556688887742
Q ss_pred eeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 576 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
.|++...+....+.-+.+++| |++.-++..|+-+.|.|+..+
T Consensus 160 ----------------sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp 201 (370)
T COG5276 160 ----------------SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP 201 (370)
T ss_pred ----------------CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC
Confidence 234555556666666788887 555667767877999998865
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=44.16 E-value=82 Score=22.44 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=19.6
Q ss_pred ecCcCeEEEEEcCCCCEEEEEe-CC--ceEEEE
Q 001321 601 LVNSPVRALQFTSSGAKLAVGF-EC--GRVAVL 630 (1100)
Q Consensus 601 ~h~~~VtsLafSp~g~~LavGs-~d--G~V~vw 630 (1100)
...+.-..-+|||||+.|+-.+ .+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4455677899999999888654 44 555544
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=44.05 E-value=49 Score=21.97 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEE
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVI 62 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw 62 (1100)
.+..+|.+++|+++++=+...+|++|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 45678888888888877777888775
No 492
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=41.86 E-value=72 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.5
Q ss_pred EEEEEeCCceEEEEecCCceEEEEeec
Q 001321 617 KLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1100)
Q Consensus 617 ~LavGs~dG~V~vwD~~~~~~~~~~~~ 643 (1100)
.+.+++.+|.|+-+|.+++++++....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466779999999999999999988766
No 493
>PHA03098 kelch-like protein; Provisional
Probab=41.52 E-value=3.9e+02 Score=32.39 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCceeeeeecCCC-eEEEEEecCCCEEEEEeCCCc------EEEEEEecCCCeee
Q 001321 98 NEIQVWSLESRSLACCLKWESN-ITAFSVISGSHFMYIGDENGL------MSVIKYDADEGKLF 154 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~~~~-Vt~~~~s~~~~~l~~G~~dG~------V~Iw~~d~~~~~l~ 154 (1100)
+.+.+||..+.+-......+.. -.+.++..++...++|+.++. -.+|.||..+++..
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 4588999887654322221211 111122234555566654321 12566776555544
No 494
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=41.24 E-value=7.9e+02 Score=30.47 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=52.6
Q ss_pred ceeeeecCCCCC--eEEEEEcCC---CCEEEEEECCCe-EE--EEeCC---------Cce--EEEeCCCCCCEEEEEEEe
Q 001321 26 LRIAVHYGIPAT--ASILAFDHI---QRLLAIATLDGR-IK--VIGGD---------GIE--GLLISPSQLPYKNLEFLQ 86 (1100)
Q Consensus 26 ~~~~~~~G~~~~--v~~la~sp~---~~lLA~gs~dG~-I~--vw~~~---------~~~--~~~~~~h~~~V~~l~fs~ 86 (1100)
|++++.|.++.+ |.|+..-.. .++.++|-.++. -+ +.... ..+ ......-...|..+.|..
T Consensus 60 PKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~ 139 (670)
T PF10395_consen 60 PKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSS 139 (670)
T ss_pred cceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEcccceEEEEEec
Confidence 678899998876 566655332 346666644432 23 22222 011 112222356899999999
Q ss_pred CCCEEEEEECCCcEEEEEc
Q 001321 87 NQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 87 d~~~Lls~s~d~~I~vWd~ 105 (1100)
++..++.+-..|.|.+||.
T Consensus 140 ~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 140 DGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred CCCEEEEEEcCCcEEEEec
Confidence 9999999999999999999
No 495
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=40.90 E-value=1.6e+02 Score=31.73 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCCEEEEEEEeC-------CCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEec----CCCEEEEEeCCCcEEE
Q 001321 75 SQLPYKNLEFLQN-------QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVIS----GSHFMYIGDENGLMSV 143 (1100)
Q Consensus 75 h~~~V~~l~fs~d-------~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~----~~~~l~~G~~dG~V~I 143 (1100)
+...|+||+-.+. -..|+.++.++.|.|.|-+.-.++..+..++...++.... -..+++++++||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 3446888887542 2579999999999999999999998887777655666654 2347889999998755
Q ss_pred E
Q 001321 144 I 144 (1100)
Q Consensus 144 w 144 (1100)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 3
No 496
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=40.74 E-value=1.1e+02 Score=35.11 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=92.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEE---eCCCCC----CEE-EEEEEeCCCEEEEEECCCcEEEE-E
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLL---ISPSQL----PYK-NLEFLQNQGFLISITNDNEIQVW-S 104 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~---~~~h~~----~V~-~l~fs~d~~~Lls~s~d~~I~vW-d 104 (1100)
.++++..+-.+|++++|.+-+. ..+.|++++....-. .....+ .|+ .+.....|.-|+.++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 5678889999999999998876 889999885543221 111111 222 23334455678888999998887 4
Q ss_pred cCCC-c--e--eeeeec-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 105 LESR-S--L--ACCLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 105 ~~s~-~--~--l~~~~~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
+... . + +..+.. +..|..+.-....+-++.-+.+|++.++.-..+ ..+. +..-. ..
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~-~~lL-----~~~~~------------~~ 359 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE-KLLL-----FERAY------------QA 359 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC-ccee-----hhhhh------------cC
Confidence 4332 1 1 111222 245666666666677777788888766543221 1111 11111 45
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEEEEccCC
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
+..+.++| .+. .+.....|.++++.+++.
T Consensus 360 ~~~~~~Sp--~~~-~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 360 PQLVAMSP--NQA-YLLSEDQGKIRLAQLENR 388 (733)
T ss_pred cceeeeCc--ccc-hheeecCCceEEEEecCC
Confidence 66778877 455 455566677788877664
No 497
>PHA02790 Kelch-like protein; Provisional
Probab=40.73 E-value=7.1e+02 Score=29.78 Aligned_cols=92 Identities=9% Similarity=-0.008 Sum_probs=40.4
Q ss_pred CCEEEEEECCC-----eEEEEeCCCceEEEeCCCCCCE--EEEEEEeCCCEEEEEECC--CcEEEEEcCCCceeeeeecC
Q 001321 47 QRLLAIATLDG-----RIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKWE 117 (1100)
Q Consensus 47 ~~lLA~gs~dG-----~I~vw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~Lls~s~d--~~I~vWd~~s~~~l~~~~~~ 117 (1100)
+.+.++|+.++ .+..||..........+-..+- -+++ .-++..-+.++.+ .++..||..+.+-......+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 45556666542 4556666544433322211111 1222 2343333444432 46888988766433322222
Q ss_pred CCeEE-EEEecCCCEEEEEeCCC
Q 001321 118 SNITA-FSVISGSHFMYIGDENG 139 (1100)
Q Consensus 118 ~~Vt~-~~~s~~~~~l~~G~~dG 139 (1100)
..... ....-+++.-++|+.++
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~ 373 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSE 373 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCC
Confidence 22221 22233455556666543
No 498
>PRK13613 lipoprotein LpqB; Provisional
Probab=40.55 E-value=7.9e+02 Score=30.31 Aligned_cols=155 Identities=9% Similarity=-0.049 Sum_probs=80.4
Q ss_pred CeEEEEEcCCCCEEEEEECCC-eEEEEeCC-Cce--E-EEeCCCCCCEEEEEEEeCCCEEEEEEC--CC--cEEEEEcCC
Q 001321 37 TASILAFDHIQRLLAIATLDG-RIKVIGGD-GIE--G-LLISPSQLPYKNLEFLQNQGFLISITN--DN--EIQVWSLES 107 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG-~I~vw~~~-~~~--~-~~~~~h~~~V~~l~fs~d~~~Lls~s~--d~--~I~vWd~~s 107 (1100)
.+...|.++++..+|.-..++ .+++..+. +.+ . ....-.....+.-.|..++ .+=++.. ++ .+++..- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 677899999999988887666 45554431 111 0 0000112235666676664 4444432 12 2455543 3
Q ss_pred Ccee--eeeecCC-CeEEEEEecCCCEEEEEeC---CCcEEEEEEec-CCCeeee-eceeecccccccccCCCCCCCCCe
Q 001321 108 RSLA--CCLKWES-NITAFSVISGSHFMYIGDE---NGLMSVIKYDA-DEGKLFQ-LPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 108 ~~~l--~~~~~~~-~Vt~~~~s~~~~~l~~G~~---dG~V~Iw~~d~-~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
++.. ......+ .|+.+.+++++-++++-.+ .+.|.|--+.. ..+.... .+..+.. ....+
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~------------~l~~v 509 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAP------------ELEDV 509 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEecc------------CCCcc
Confidence 3332 1222334 7999999999988776543 35566655443 2332111 1111211 11459
Q ss_pred EEEEeccCCCCCEEEEEEcCC-EEEEEEc
Q 001321 180 VGVLPHPNSSGNRVLIAYENA-LVILWDV 207 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg-~V~lwdl 207 (1100)
.++.|.. ++++++.+...+ ...+|-+
T Consensus 510 ~~~~W~~--~~sL~Vlg~~~~~~~~v~~v 536 (599)
T PRK13613 510 TDMSWAG--DSQLVVLGREEGGVQQARYV 536 (599)
T ss_pred ceeEEcC--CCEEEEEeccCCCCcceEEE
Confidence 9999944 666333353333 3345543
No 499
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=40.39 E-value=56 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEeCCceEEEEecCCceEEEE
Q 001321 617 KLAVGFECGRVAVLDMNLLSVLFF 640 (1100)
Q Consensus 617 ~LavGs~dG~V~vwD~~~~~~~~~ 640 (1100)
.+.+++.+|.+..+|..+++++++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 588889999999999999988864
No 500
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=40.22 E-value=4e+02 Score=31.94 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCC---CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL---PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~---~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
++|..+-.|.+|+ |-+++.+|.+++-..+-....+.....+ ...+++..-....+--..+-+.+.+-+-.++.++.
T Consensus 290 S~vnsL~~D~dGs-LWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~ 368 (671)
T COG3292 290 STVNSLWLDTDGS-LWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVR 368 (671)
T ss_pred ccccceeeccCCC-EeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEE
Q ss_pred ee--ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 113 CL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 113 ~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
+. --...|+...++. ...+-+|+...-+.-|+-....-.+.. ..+... ++|..|.-.| ++
T Consensus 369 sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde----~agl~s-----------s~V~aived~--dn 430 (671)
T COG3292 369 SVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDE----DAGLPS-----------SEVSAIVEDP--DN 430 (671)
T ss_pred Eeeeccccccchhhhcc-CCcEEEEecccchhhhccCCccccccc----ccCCcc-----------cceeeeeecC--CC
Q ss_pred CEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc
Q 001321 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~ 270 (1100)
+ +.+|..+|. .--+.+.+++..+......... ...|..+..- |+|+ +-.++.
T Consensus 431 s-LWIGTs~Gl-vk~~pe~~~v~n~ln~~~~~l~------------------------~s~~~~lg~~-~~g~-Lw~a~g 482 (671)
T COG3292 431 S-LWIGTSGGL-VKRDPESGRVLNLLNPGSHGLD------------------------GSRVEQLGLG-PDGR-LWLAAG 482 (671)
T ss_pred C-EEEeccCCe-EecCccccchhcccccccCcCC------------------------cchhhhhccC-CCCc-eEEEec
Q ss_pred CCcEEEEe
Q 001321 271 DGDILLWN 278 (1100)
Q Consensus 271 DG~I~lWd 278 (1100)
+| |..|+
T Consensus 483 ~g-va~~~ 489 (671)
T COG3292 483 SG-VAAWE 489 (671)
T ss_pred ce-eeeec
Done!