Query 001321
Match_columns 1100
No_of_seqs 516 out of 3281
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oaj_A Protein SNI1; WD40 repe 100.0 4.9E-67 1.7E-71 671.3 79.7 778 21-906 3-845 (902)
2 2ymu_A WD-40 repeat protein; u 100.0 1.7E-46 5.7E-51 460.8 68.8 556 31-883 12-575 (577)
3 2ymu_A WD-40 repeat protein; u 100.0 1.2E-42 4E-47 426.5 64.2 519 31-837 53-577 (577)
4 1nr0_A Actin interacting prote 100.0 2.1E-42 7.2E-47 427.1 64.8 551 35-839 18-610 (611)
5 1nr0_A Actin interacting prote 100.0 1.7E-42 5.8E-47 428.0 63.3 475 32-703 56-569 (611)
6 3sfz_A APAF-1, apoptotic pepti 100.0 6.6E-42 2.2E-46 458.7 54.4 614 29-883 609-1244(1249)
7 1pgu_A Actin interacting prote 100.0 3.6E-38 1.2E-42 389.2 61.3 550 32-884 15-610 (615)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-39 6.3E-44 435.0 52.3 550 32-840 654-1249(1249)
9 1pgu_A Actin interacting prote 100.0 1.6E-38 5.3E-43 392.5 47.7 474 31-701 59-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 7.2E-36 2.5E-40 382.6 57.1 568 30-707 53-738 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 6.7E-34 2.3E-38 363.7 42.9 464 32-662 10-482 (814)
12 1vyh_C Platelet-activating fac 100.0 4.5E-34 1.6E-38 334.6 36.4 316 61-633 93-410 (410)
13 1got_B GT-beta; complex (GTP-b 100.0 5.6E-33 1.9E-37 316.6 40.0 292 68-631 47-340 (340)
14 1vyh_C Platelet-activating fac 100.0 4E-33 1.4E-37 326.5 37.8 204 29-282 102-328 (410)
15 1r5m_A SIR4-interacting protei 100.0 4.7E-33 1.6E-37 326.0 37.2 360 27-634 37-425 (425)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.5E-32 1.6E-36 309.8 43.9 202 32-280 12-224 (345)
17 3ow8_A WD repeat-containing pr 100.0 8.7E-33 3E-37 312.2 37.1 205 28-282 25-238 (321)
18 3ow8_A WD repeat-containing pr 100.0 1.3E-32 4.5E-37 310.7 38.4 286 71-633 27-320 (321)
19 2ynn_A Coatomer subunit beta'; 100.0 3.9E-32 1.3E-36 304.5 39.7 290 70-634 7-302 (304)
20 1gxr_A ESG1, transducin-like e 100.0 2.4E-32 8.4E-37 309.3 37.5 320 35-633 9-336 (337)
21 1got_B GT-beta; complex (GTP-b 100.0 8.5E-32 2.9E-36 306.9 41.7 200 32-282 52-258 (340)
22 4g56_B MGC81050 protein; prote 100.0 1.9E-32 6.6E-37 314.3 36.4 319 40-635 10-344 (357)
23 2ynn_A Coatomer subunit beta'; 100.0 1.2E-31 4E-36 300.6 41.1 203 33-282 11-218 (304)
24 3iz6_a 40S ribosomal protein R 100.0 1.1E-32 3.8E-37 319.4 33.1 312 69-636 59-377 (380)
25 4gqb_B Methylosome protein 50; 100.0 4.9E-32 1.7E-36 308.8 37.6 302 59-637 16-334 (344)
26 2pbi_B Guanine nucleotide-bind 100.0 1.2E-31 4.1E-36 307.4 41.2 202 32-281 61-271 (354)
27 2pm9_A Protein WEB1, protein t 100.0 1.1E-33 3.7E-38 331.2 22.9 366 35-635 12-415 (416)
28 1r5m_A SIR4-interacting protei 100.0 8.3E-32 2.8E-36 315.3 38.9 354 57-699 25-423 (425)
29 3mkq_A Coatomer beta'-subunit; 100.0 5.1E-31 1.7E-35 337.0 49.6 391 70-698 7-420 (814)
30 2pbi_B Guanine nucleotide-bind 100.0 1.1E-31 3.8E-36 307.7 39.0 293 69-631 57-354 (354)
31 4gqb_B Methylosome protein 50; 100.0 3E-32 1E-36 310.6 32.9 204 32-282 27-247 (344)
32 3vl1_A 26S proteasome regulato 100.0 9.3E-32 3.2E-36 315.5 34.7 356 35-635 56-420 (420)
33 1erj_A Transcriptional repress 100.0 5E-31 1.7E-35 306.9 39.1 303 72-634 60-389 (393)
34 4ery_A WD repeat-containing pr 100.0 1.6E-30 5.6E-35 292.1 41.8 203 32-282 20-224 (312)
35 4g56_B MGC81050 protein; prote 100.0 1.3E-31 4.5E-36 307.4 31.9 205 31-282 38-259 (357)
36 3frx_A Guanine nucleotide-bind 100.0 1.3E-30 4.5E-35 294.1 38.9 202 32-282 14-228 (319)
37 1erj_A Transcriptional repress 100.0 8.8E-31 3E-35 304.9 38.0 215 25-282 54-288 (393)
38 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-30 1.3E-34 293.8 42.6 320 110-704 7-338 (345)
39 2xzm_R RACK1; ribosome, transl 100.0 2.7E-30 9.3E-35 294.8 40.3 204 31-280 17-243 (343)
40 3iz6_a 40S ribosomal protein R 100.0 1.6E-31 5.3E-36 309.7 30.1 208 31-282 62-281 (380)
41 3vl1_A 26S proteasome regulato 100.0 1.7E-30 5.9E-35 304.6 38.8 352 78-700 58-418 (420)
42 2hes_X YDR267CP; beta-propelle 100.0 3.9E-30 1.3E-34 291.8 40.1 202 32-281 11-230 (330)
43 1gxr_A ESG1, transducin-like e 100.0 9.1E-31 3.1E-35 296.3 32.8 323 75-698 8-334 (337)
44 3frx_A Guanine nucleotide-bind 100.0 2.3E-29 7.8E-34 284.0 43.7 297 115-702 15-318 (319)
45 2pm9_A Protein WEB1, protein t 100.0 3.7E-32 1.3E-36 318.2 21.4 340 77-702 13-415 (416)
46 2hes_X YDR267CP; beta-propelle 100.0 6.9E-30 2.4E-34 289.7 38.8 161 70-280 8-183 (330)
47 4aow_A Guanine nucleotide-bind 100.0 1.4E-29 4.7E-34 287.4 40.9 214 21-282 25-247 (340)
48 2xzm_R RACK1; ribosome, transl 100.0 7.1E-30 2.4E-34 291.3 37.4 302 70-635 15-341 (343)
49 4ery_A WD repeat-containing pr 100.0 1.5E-29 5.3E-34 284.1 39.3 290 68-633 15-311 (312)
50 3gre_A Serine/threonine-protei 100.0 3.3E-30 1.1E-34 304.3 32.5 204 42-282 34-246 (437)
51 3zwl_B Eukaryotic translation 100.0 2E-28 6.7E-33 280.7 44.1 220 26-282 23-250 (369)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-28 4.4E-33 291.5 43.7 313 31-634 114-442 (445)
53 3ei3_B DNA damage-binding prot 100.0 3.6E-29 1.2E-33 289.8 37.5 201 31-282 69-283 (383)
54 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-31 2.1E-35 315.3 23.0 204 31-282 129-387 (524)
55 4aow_A Guanine nucleotide-bind 100.0 4.3E-28 1.5E-32 275.0 43.0 312 100-703 18-339 (340)
56 3k26_A Polycomb protein EED; W 100.0 2.1E-29 7E-34 288.8 31.5 329 70-633 12-365 (366)
57 3i2n_A WD repeat-containing pr 100.0 5.8E-29 2E-33 284.1 34.5 206 30-280 13-242 (357)
58 3v7d_B Cell division control p 100.0 8E-28 2.7E-32 286.2 44.4 345 69-698 114-460 (464)
59 3zwl_B Eukaryotic translation 100.0 3.6E-28 1.2E-32 278.5 39.2 304 68-638 24-350 (369)
60 4a11_B DNA excision repair pro 100.0 3.2E-28 1.1E-32 283.3 39.1 218 30-282 38-277 (408)
61 4e54_B DNA damage-binding prot 100.0 1E-29 3.6E-34 300.1 26.4 205 32-282 116-328 (435)
62 1k8k_C P40, ARP2/3 complex 41 100.0 1.3E-28 4.5E-33 283.1 34.4 330 73-637 5-364 (372)
63 3v7d_B Cell division control p 100.0 1.3E-27 4.6E-32 284.3 44.2 219 26-282 112-342 (464)
64 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-28 1.2E-32 279.4 37.8 204 33-282 6-234 (372)
65 3dm0_A Maltose-binding peripla 100.0 2.7E-28 9.4E-33 305.8 38.2 207 31-282 378-593 (694)
66 3k26_A Polycomb protein EED; W 100.0 2.6E-28 9E-33 279.5 34.5 232 28-282 11-261 (366)
67 4h5i_A Guanine nucleotide-exch 100.0 1.8E-28 6E-33 282.2 33.0 309 31-634 10-343 (365)
68 1sq9_A Antiviral protein SKI8; 100.0 4.8E-28 1.7E-32 281.4 37.0 308 71-635 11-396 (397)
69 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-27 4.5E-32 267.4 38.9 287 69-638 11-300 (313)
70 1sq9_A Antiviral protein SKI8; 100.0 6.9E-28 2.4E-32 280.0 36.8 215 30-282 11-268 (397)
71 3ei3_B DNA damage-binding prot 100.0 8.1E-28 2.8E-32 278.5 36.1 164 71-282 68-237 (383)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-27 1.5E-31 278.4 42.6 318 69-699 111-440 (445)
73 2j04_B YDR362CP, TAU91; beta p 100.0 4.4E-29 1.5E-33 299.2 23.3 335 74-698 131-514 (524)
74 3gre_A Serine/threonine-protei 100.0 2E-28 6.9E-33 289.0 28.5 202 32-282 60-293 (437)
75 4a11_B DNA excision repair pro 100.0 1.2E-27 4E-32 278.6 33.3 328 56-638 22-369 (408)
76 3dwl_C Actin-related protein 2 100.0 3.8E-28 1.3E-32 280.4 27.4 162 74-282 9-178 (377)
77 3i2n_A WD repeat-containing pr 100.0 8.8E-27 3E-31 266.0 37.8 308 115-704 16-356 (357)
78 3dwl_C Actin-related protein 2 100.0 8.6E-29 2.9E-33 285.8 21.1 222 31-282 7-237 (377)
79 4e54_B DNA damage-binding prot 100.0 5.1E-28 1.7E-32 285.6 28.1 163 72-282 115-283 (435)
80 3dm0_A Maltose-binding peripla 100.0 1.3E-26 4.5E-31 290.5 40.9 292 115-699 380-691 (694)
81 3odt_A Protein DOA1; ubiquitin 100.0 3E-26 1E-30 256.3 37.2 194 32-282 15-215 (313)
82 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-28 5.8E-33 286.1 18.4 194 31-282 11-212 (588)
83 4gga_A P55CDC, cell division c 100.0 3E-26 1E-30 269.1 37.9 283 78-637 107-398 (420)
84 2pm7_B Protein transport prote 100.0 1.4E-26 4.7E-31 258.3 32.8 268 115-633 7-284 (297)
85 4gga_A P55CDC, cell division c 100.0 4.8E-26 1.6E-30 267.4 38.6 192 38-282 108-311 (420)
86 4aez_A CDC20, WD repeat-contai 100.0 2E-26 6.9E-31 268.8 34.9 290 69-638 84-384 (401)
87 1yfq_A Cell cycle arrest prote 100.0 1.7E-26 5.8E-31 262.2 33.0 289 71-631 6-321 (342)
88 4ggc_A P55CDC, cell division c 100.0 6.6E-26 2.3E-30 254.3 37.4 282 79-635 28-316 (318)
89 3dw8_B Serine/threonine-protei 100.0 2.7E-26 9.1E-31 271.2 33.7 212 35-281 28-315 (447)
90 3bg1_A Protein SEC13 homolog; 100.0 1.2E-26 4E-31 261.4 28.8 272 115-633 11-292 (316)
91 4aez_A CDC20, WD repeat-contai 100.0 6E-26 2.1E-30 264.7 34.8 197 33-282 89-294 (401)
92 2pm7_B Protein transport prote 100.0 1.2E-25 4.2E-30 250.6 35.7 206 30-281 4-238 (297)
93 3f3f_A Nucleoporin SEH1; struc 100.0 9.4E-26 3.2E-30 255.5 35.3 218 30-282 6-250 (351)
94 4ggc_A P55CDC, cell division c 99.9 1.1E-25 3.8E-30 252.5 34.7 192 38-282 28-231 (318)
95 1yfq_A Cell cycle arrest prote 99.9 4.3E-26 1.5E-30 258.9 31.7 202 32-282 8-226 (342)
96 3mmy_A MRNA export factor; mRN 99.9 6.4E-26 2.2E-30 259.6 32.5 164 67-281 30-199 (368)
97 4h5i_A Guanine nucleotide-exch 99.9 5.9E-25 2E-29 252.7 38.5 155 490-699 183-341 (365)
98 1p22_A F-BOX/WD-repeat protein 99.9 2.7E-25 9.2E-30 262.2 36.4 196 30-282 128-326 (435)
99 1p22_A F-BOX/WD-repeat protein 99.9 2.1E-25 7.1E-30 263.2 35.0 285 72-638 129-418 (435)
100 3dw8_B Serine/threonine-protei 99.9 6.1E-26 2.1E-30 268.1 30.5 182 73-282 25-259 (447)
101 3f3f_A Nucleoporin SEH1; struc 99.9 3.5E-25 1.2E-29 250.8 32.2 181 71-280 6-200 (351)
102 3mmy_A MRNA export factor; mRN 99.9 1.1E-24 3.8E-29 249.3 36.7 299 103-698 24-343 (368)
103 3bg1_A Protein SEC13 homolog; 99.9 1.6E-25 5.6E-30 252.0 27.1 207 30-281 8-247 (316)
104 3jrp_A Fusion protein of prote 99.9 1.6E-24 5.5E-29 249.3 33.4 272 115-635 9-288 (379)
105 3jrp_A Fusion protein of prote 99.9 2.7E-24 9.4E-29 247.3 32.3 167 70-282 5-192 (379)
106 2aq5_A Coronin-1A; WD40 repeat 99.9 1.3E-24 4.5E-29 253.4 28.5 196 35-280 34-253 (402)
107 1k32_A Tricorn protease; prote 99.9 4.2E-22 1.4E-26 261.0 52.7 441 34-701 13-502 (1045)
108 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.1E-23 7.2E-28 247.1 34.2 160 76-282 4-230 (450)
109 2xyi_A Probable histone-bindin 99.9 2.7E-23 9.2E-28 244.7 33.9 213 24-280 34-308 (430)
110 3vu4_A KMHSV2; beta-propeller 99.9 1.4E-23 4.6E-28 240.5 29.3 192 32-282 16-228 (355)
111 4gq1_A NUP37; propeller, trans 99.9 1.3E-23 4.5E-28 244.1 28.0 184 34-282 14-219 (393)
112 1k32_A Tricorn protease; prote 99.9 6.7E-22 2.3E-26 259.0 47.3 377 31-637 48-505 (1045)
113 3bws_A Protein LP49; two-domai 99.9 2.6E-22 9E-27 236.0 39.1 199 34-282 59-293 (433)
114 3vu4_A KMHSV2; beta-propeller 99.9 4.8E-23 1.6E-27 235.9 30.7 110 501-635 155-272 (355)
115 3jro_A Fusion protein of prote 99.9 6.2E-24 2.1E-28 268.1 25.5 206 31-282 5-239 (753)
116 2j04_A TAU60, YPL007P, hypothe 99.9 1.7E-23 5.8E-28 244.1 25.7 284 71-633 10-296 (588)
117 1l0q_A Surface layer protein; 99.9 1.2E-21 4.1E-26 227.0 40.9 185 47-282 2-190 (391)
118 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.3E-22 4.4E-27 240.4 33.1 201 35-282 4-272 (450)
119 4gq1_A NUP37; propeller, trans 99.9 2.8E-23 9.5E-28 241.4 26.0 231 29-282 33-287 (393)
120 2aq5_A Coronin-1A; WD40 repeat 99.9 2.7E-23 9.3E-28 242.2 24.4 156 490-704 183-345 (402)
121 2xyi_A Probable histone-bindin 99.9 3.4E-22 1.2E-26 235.3 33.2 156 490-701 238-410 (430)
122 3jro_A Fusion protein of prote 99.9 8.4E-23 2.9E-27 257.8 26.8 166 71-282 4-190 (753)
123 3lrv_A PRE-mRNA-splicing facto 99.9 2.1E-22 7.1E-27 229.4 27.1 159 84-282 44-202 (343)
124 1l0q_A Surface layer protein; 99.9 1.4E-20 4.7E-25 218.0 41.1 273 89-642 3-283 (391)
125 1nir_A Nitrite reductase; hemo 99.9 2.7E-21 9.1E-26 233.5 34.9 204 40-282 142-356 (543)
126 3bws_A Protein LP49; two-domai 99.9 7.1E-21 2.4E-25 223.8 35.7 354 35-700 27-431 (433)
127 3lrv_A PRE-mRNA-splicing facto 99.9 3.3E-22 1.1E-26 227.7 22.1 188 41-282 42-245 (343)
128 2w18_A PALB2, fancn, partner a 99.9 1.5E-20 5.1E-25 206.4 31.3 103 497-632 252-355 (356)
129 1nir_A Nitrite reductase; hemo 99.9 6.8E-20 2.3E-24 221.2 34.0 353 83-708 144-521 (543)
130 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-19 4.6E-24 228.7 36.9 224 21-282 20-322 (741)
131 2hqs_A Protein TOLB; TOLB, PAL 99.8 6E-19 2E-23 206.2 30.0 195 36-281 63-300 (415)
132 2w18_A PALB2, fancn, partner a 99.8 1.6E-19 5.3E-24 198.3 21.8 195 36-279 112-355 (356)
133 2z3z_A Dipeptidyl aminopeptida 99.8 2.2E-18 7.7E-23 216.2 35.2 205 38-282 28-294 (706)
134 1xfd_A DIP, dipeptidyl aminope 99.8 3.4E-18 1.2E-22 215.1 27.2 225 24-282 5-290 (723)
135 2ecf_A Dipeptidyl peptidase IV 99.8 1.7E-17 5.7E-22 209.5 33.5 169 76-278 36-237 (741)
136 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.5E-17 8.5E-22 192.5 31.2 187 47-282 143-345 (415)
137 1ri6_A Putative isomerase YBHE 99.8 1.7E-16 5.7E-21 179.4 36.8 146 89-281 5-160 (343)
138 1ri6_A Putative isomerase YBHE 99.8 1.8E-16 6E-21 179.2 33.5 188 49-280 7-208 (343)
139 1pby_B Quinohemoprotein amine 99.8 1.7E-16 5.9E-21 178.8 30.7 147 48-216 2-170 (337)
140 2ojh_A Uncharacterized protein 99.8 1.2E-16 4.2E-21 175.9 26.9 176 53-279 18-202 (297)
141 2z3z_A Dipeptidyl aminopeptida 99.7 3.2E-16 1.1E-20 196.5 33.0 158 489-703 263-437 (706)
142 3u4y_A Uncharacterized protein 99.7 9E-16 3.1E-20 173.0 32.8 149 82-281 3-160 (331)
143 3vgz_A Uncharacterized protein 99.7 2.7E-15 9.2E-20 170.4 33.7 208 30-282 35-263 (353)
144 3vgz_A Uncharacterized protein 99.7 5.2E-15 1.8E-19 168.0 34.5 168 74-282 38-216 (353)
145 1z68_A Fibroblast activation p 99.7 2.2E-16 7.6E-21 198.5 25.2 153 39-199 19-189 (719)
146 3u4y_A Uncharacterized protein 99.7 4.3E-15 1.5E-19 167.4 30.3 195 41-282 3-208 (331)
147 3o4h_A Acylamino-acid-releasin 99.7 1E-15 3.4E-20 187.4 26.9 154 76-282 21-185 (582)
148 1xfd_A DIP, dipeptidyl aminope 99.7 6.7E-16 2.3E-20 194.2 24.3 172 77-280 17-203 (723)
149 3hfq_A Uncharacterized protein 99.7 2.3E-14 8E-19 162.7 34.7 165 490-706 147-324 (347)
150 3scy_A Hypothetical bacterial 99.7 9.4E-14 3.2E-18 158.7 38.8 138 490-657 217-360 (361)
151 2ojh_A Uncharacterized protein 99.7 6.3E-15 2.1E-19 162.1 28.0 201 31-282 37-259 (297)
152 3hfq_A Uncharacterized protein 99.7 6.1E-14 2.1E-18 159.2 34.9 145 97-280 15-170 (347)
153 1jmx_B Amine dehydrogenase; ox 99.7 1E-14 3.5E-19 165.2 27.9 157 40-216 4-182 (349)
154 3o4h_A Acylamino-acid-releasin 99.7 1.4E-14 4.8E-19 177.2 28.7 193 35-282 21-228 (582)
155 2oit_A Nucleoporin 214KDA; NH2 99.6 1.1E-15 3.9E-20 179.1 17.7 203 36-282 37-279 (434)
156 1z68_A Fibroblast activation p 99.6 2.3E-14 8E-19 180.0 25.0 163 81-279 20-198 (719)
157 3scy_A Hypothetical bacterial 99.6 1.5E-12 5E-17 148.8 35.8 205 34-280 48-290 (361)
158 1jof_A Carboxy-CIS,CIS-muconat 99.6 7.7E-13 2.6E-17 151.5 32.9 191 49-280 4-223 (365)
159 4a5s_A Dipeptidyl peptidase 4 99.6 3.3E-13 1.1E-17 169.9 32.5 175 24-207 5-200 (740)
160 1pby_B Quinohemoprotein amine 99.6 3E-13 1E-17 152.1 25.9 205 37-283 35-312 (337)
161 2oit_A Nucleoporin 214KDA; NH2 99.6 4.3E-14 1.5E-18 165.7 18.0 165 32-210 89-279 (434)
162 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.7E-12 9.4E-17 146.9 32.3 167 490-702 151-342 (365)
163 3pe7_A Oligogalacturonate lyas 99.5 1E-12 3.6E-17 151.3 27.0 159 65-271 19-209 (388)
164 3pe7_A Oligogalacturonate lyas 99.5 1.9E-12 6.4E-17 149.2 26.5 196 41-282 41-274 (388)
165 2oiz_A Aromatic amine dehydrog 99.5 4.2E-11 1.4E-15 136.7 32.6 149 87-281 14-182 (361)
166 3c5m_A Oligogalacturonate lyas 99.5 1.8E-12 6E-17 149.6 20.8 161 38-270 38-208 (396)
167 3azo_A Aminopeptidase; POP fam 99.4 1.8E-11 6.2E-16 152.0 30.5 199 32-278 20-269 (662)
168 3azo_A Aminopeptidase; POP fam 99.4 7.3E-12 2.5E-16 155.6 25.4 164 72-280 19-225 (662)
169 1jmx_B Amine dehydrogenase; ox 99.4 1E-11 3.5E-16 140.3 23.7 204 37-282 44-326 (349)
170 1urq_A M-tomosyn isoform; tran 99.4 1.6E-13 5.6E-18 108.8 5.0 59 1032-1093 5-63 (63)
171 1qks_A Cytochrome CD1 nitrite 99.4 1E-09 3.6E-14 131.8 40.1 203 42-282 162-374 (567)
172 2oiz_A Aromatic amine dehydrog 99.4 1.4E-10 4.8E-15 132.3 31.1 146 46-213 14-187 (361)
173 4a5s_A Dipeptidyl peptidase 4 99.4 1E-10 3.5E-15 147.1 32.7 167 77-280 17-201 (740)
174 2gop_A Trilobed protease; beta 99.3 5.3E-10 1.8E-14 126.4 30.2 110 78-212 16-164 (347)
175 1qks_A Cytochrome CD1 nitrite 99.3 2.9E-09 9.8E-14 128.0 37.7 115 86-216 165-282 (567)
176 2gop_A Trilobed protease; beta 99.2 2E-09 6.8E-14 121.6 28.9 94 37-137 16-123 (347)
177 1q7f_A NHL, brain tumor CG1071 99.2 4.2E-09 1.4E-13 115.5 30.6 199 34-280 28-237 (286)
178 2dg1_A DRP35, lactonase; beta 99.2 1.5E-09 5.1E-14 122.0 25.3 193 37-280 7-212 (333)
179 3fvz_A Peptidyl-glycine alpha- 99.2 3.5E-09 1.2E-13 119.0 27.2 212 35-283 23-279 (329)
180 2xdw_A Prolyl endopeptidase; a 99.2 6E-09 2.1E-13 130.3 31.8 190 45-281 81-320 (710)
181 1q7f_A NHL, brain tumor CG1071 99.2 5.2E-09 1.8E-13 114.8 26.2 199 35-282 76-281 (286)
182 2bkl_A Prolyl endopeptidase; m 99.1 1.4E-09 4.9E-14 135.6 23.4 157 45-218 77-270 (695)
183 3fvz_A Peptidyl-glycine alpha- 99.1 5.6E-09 1.9E-13 117.3 25.2 202 34-281 89-322 (329)
184 3e5z_A Putative gluconolactona 99.1 1E-08 3.6E-13 113.0 26.2 194 35-280 27-245 (296)
185 2z2n_A Virginiamycin B lyase; 99.1 3.8E-07 1.3E-11 100.0 37.8 195 35-279 14-211 (299)
186 2dg1_A DRP35, lactonase; beta 99.1 3.2E-08 1.1E-12 111.0 29.0 207 33-280 42-262 (333)
187 1xip_A Nucleoporin NUP159; bet 99.1 2.7E-09 9.1E-14 120.9 19.0 178 37-267 39-230 (388)
188 3c5m_A Oligogalacturonate lyas 99.1 2E-09 6.7E-14 123.9 18.0 195 40-283 85-331 (396)
189 2z2n_A Virginiamycin B lyase; 99.1 4.2E-07 1.4E-11 99.6 35.9 155 75-279 13-169 (299)
190 3sjl_D Methylamine dehydrogena 99.0 1E-07 3.5E-12 107.4 29.1 154 82-281 38-208 (386)
191 2xdw_A Prolyl endopeptidase; a 99.0 1E-08 3.6E-13 128.1 23.2 202 33-282 122-369 (710)
192 3e5z_A Putative gluconolactona 99.0 5.6E-08 1.9E-12 107.1 24.0 198 34-282 67-287 (296)
193 1yr2_A Prolyl oligopeptidase; 99.0 6.7E-08 2.3E-12 121.3 27.3 186 45-280 116-349 (741)
194 1rwi_B Serine/threonine-protei 99.0 5.5E-08 1.9E-12 105.3 22.9 196 37-282 25-223 (270)
195 2mad_H Methylamine dehydrogena 98.9 1.7E-06 5.9E-11 98.5 36.2 150 84-282 28-196 (373)
196 3no2_A Uncharacterized protein 98.9 2.5E-08 8.4E-13 108.9 19.9 189 46-283 4-197 (276)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 98.9 5.1E-07 1.7E-11 100.0 30.7 202 36-282 18-257 (314)
198 2qc5_A Streptogramin B lactona 98.9 1.9E-06 6.4E-11 94.4 35.0 193 35-279 19-216 (300)
199 2bkl_A Prolyl endopeptidase; m 98.9 2.3E-08 7.7E-13 124.7 19.7 197 33-280 118-348 (695)
200 3dsm_A Uncharacterized protein 98.9 4.8E-07 1.6E-11 101.4 28.2 195 34-283 42-255 (328)
201 2qc5_A Streptogramin B lactona 98.9 3.7E-06 1.3E-10 92.0 34.2 155 75-279 18-174 (300)
202 1rwi_B Serine/threonine-protei 98.8 1.1E-07 3.9E-12 102.8 19.6 197 36-282 67-265 (270)
203 3sjl_D Methylamine dehydrogena 98.8 1.5E-06 5.2E-11 97.9 28.4 148 41-212 38-212 (386)
204 4a2l_A BT_4663, two-component 98.8 0.00072 2.5E-08 85.3 56.2 203 38-282 175-387 (795)
205 4a2l_A BT_4663, two-component 98.8 0.00043 1.5E-08 87.3 54.2 198 36-282 88-292 (795)
206 3v9f_A Two-component system se 98.8 0.0012 4E-08 83.2 57.6 207 36-282 66-288 (781)
207 2mad_H Methylamine dehydrogena 98.8 1.3E-06 4.6E-11 99.4 27.5 204 40-283 70-352 (373)
208 3hrp_A Uncharacterized protein 98.8 2.1E-07 7.2E-12 107.6 20.7 216 37-282 132-355 (409)
209 3g4e_A Regucalcin; six bladed 98.7 1.6E-06 5.6E-11 95.4 26.0 196 31-271 49-262 (297)
210 3g4e_A Regucalcin; six bladed 98.7 3.5E-06 1.2E-10 92.7 28.3 196 38-282 15-230 (297)
211 1xip_A Nucleoporin NUP159; bet 98.7 1.1E-07 3.8E-12 107.6 16.0 148 31-199 84-233 (388)
212 3dsm_A Uncharacterized protein 98.7 3.8E-07 1.3E-11 102.2 20.1 197 34-280 82-301 (328)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 2.1E-06 7.3E-11 94.9 24.4 202 34-282 69-300 (314)
214 3c75_H MADH, methylamine dehyd 98.6 4.9E-06 1.7E-10 95.5 26.6 118 86-216 82-216 (426)
215 3no2_A Uncharacterized protein 98.6 3E-06 1E-10 92.2 23.6 166 28-217 27-203 (276)
216 3q7m_A Lipoprotein YFGL, BAMB; 98.6 3.7E-05 1.3E-09 87.6 33.8 146 88-282 53-208 (376)
217 1yr2_A Prolyl oligopeptidase; 98.6 8.1E-07 2.8E-11 111.5 21.4 195 35-280 162-392 (741)
218 3v9f_A Two-component system se 98.6 0.0045 1.5E-07 77.8 55.8 212 37-282 116-343 (781)
219 2ghs_A AGR_C_1268P; regucalcin 98.6 1.5E-05 5.2E-10 88.9 28.0 192 38-279 51-258 (326)
220 2ghs_A AGR_C_1268P; regucalcin 98.5 2E-05 6.9E-10 87.9 26.8 192 33-272 87-293 (326)
221 3q7m_A Lipoprotein YFGL, BAMB; 98.5 9.4E-05 3.2E-09 84.1 32.3 173 24-216 26-214 (376)
222 2qe8_A Uncharacterized protein 98.5 1E-05 3.5E-10 91.1 23.6 228 26-282 9-279 (343)
223 3c75_H MADH, methylamine dehyd 98.5 3.4E-06 1.2E-10 96.8 19.5 211 40-283 122-404 (426)
224 3dr2_A Exported gluconolactona 98.5 4E-06 1.4E-10 92.7 19.7 191 35-276 85-302 (305)
225 3iuj_A Prolyl endopeptidase; h 98.5 3.2E-06 1.1E-10 105.0 20.9 121 74-210 126-269 (693)
226 1kb0_A Quinohemoprotein alcoho 98.5 5.1E-05 1.7E-09 93.5 31.3 111 88-216 77-206 (677)
227 3iuj_A Prolyl endopeptidase; h 98.5 2E-06 6.9E-11 106.8 19.0 205 23-281 117-359 (693)
228 3hrp_A Uncharacterized protein 98.5 1.7E-05 5.8E-10 91.6 24.5 214 41-279 176-408 (409)
229 3dr2_A Exported gluconolactona 98.4 2.1E-05 7.2E-10 86.8 21.4 194 37-280 46-266 (305)
230 1yiq_A Quinohemoprotein alcoho 98.3 8.4E-05 2.9E-09 91.8 28.3 110 88-216 70-199 (689)
231 2qe8_A Uncharacterized protein 98.2 4.6E-05 1.6E-09 85.6 20.7 200 34-277 65-317 (343)
232 1mda_H Methylamine dehydrogena 98.2 5.1E-06 1.7E-10 93.7 12.2 68 40-107 69-158 (368)
233 1l4a_A Synaptobrevin; snare, s 98.2 7.8E-07 2.7E-11 75.3 3.6 65 1028-1099 12-76 (80)
234 1yiq_A Quinohemoprotein alcoho 98.1 0.00056 1.9E-08 84.4 29.2 209 47-284 70-341 (689)
235 1mda_H Methylamine dehydrogena 98.1 0.00017 5.8E-09 81.3 21.9 75 542-642 269-354 (368)
236 2hz6_A Endoplasmic reticulum t 98.1 4.4E-07 1.5E-11 103.5 -0.0 181 46-282 8-193 (369)
237 2ece_A 462AA long hypothetical 98.1 0.00041 1.4E-08 78.7 24.0 168 37-209 139-352 (462)
238 2iwa_A Glutamine cyclotransfer 98.1 0.00074 2.5E-08 71.9 24.6 223 22-282 5-238 (266)
239 1kb0_A Quinohemoprotein alcoho 98.1 0.00044 1.5E-08 85.1 26.2 188 490-708 249-514 (677)
240 1sfc_A VAMP 2, protein (synapt 98.0 3.3E-06 1.1E-10 73.9 4.7 61 1029-1092 28-88 (96)
241 1n7s_A Vesicle-associated memb 98.0 3.8E-06 1.3E-10 67.6 4.5 48 1045-1092 15-62 (63)
242 1npe_A Nidogen, entactin; glyc 98.0 0.0011 3.7E-08 71.2 25.7 194 37-282 37-239 (267)
243 1fwx_A Nitrous oxide reductase 98.0 0.00069 2.3E-08 79.6 25.3 212 45-281 99-361 (595)
244 3nol_A Glutamine cyclotransfer 98.0 0.00044 1.5E-08 72.8 20.8 214 21-270 26-244 (262)
245 3s94_A LRP-6, low-density lipo 98.0 0.07 2.4E-06 64.5 54.8 160 36-212 40-205 (619)
246 3ei3_A DNA damage-binding prot 98.0 0.13 4.3E-06 66.7 65.9 151 44-209 43-215 (1158)
247 3hxj_A Pyrrolo-quinoline quino 97.9 0.00044 1.5E-08 76.6 20.9 107 537-698 215-321 (330)
248 3hd7_A Vesicle-associated memb 97.9 1E-05 3.6E-10 70.2 5.3 47 1046-1092 17-63 (91)
249 2fp8_A Strictosidine synthase; 97.9 0.0043 1.5E-07 68.6 27.9 154 37-209 20-216 (322)
250 2ece_A 462AA long hypothetical 97.9 0.00044 1.5E-08 78.4 19.4 209 42-282 88-353 (462)
251 3qqz_A Putative uncharacterize 97.8 0.0034 1.2E-07 66.3 24.6 214 32-278 23-250 (255)
252 1kv9_A Type II quinohemoprotei 97.8 0.013 4.5E-07 71.8 31.8 111 88-216 66-194 (668)
253 3mbr_X Glutamine cyclotransfer 97.8 0.0072 2.5E-07 63.0 24.8 214 22-270 5-223 (243)
254 2nps_A VAMP-4, vesicle-associa 97.7 3.1E-05 1E-09 64.4 5.4 49 1047-1099 21-69 (74)
255 4a0p_A LRP6, LRP-6, low-densit 97.7 0.19 6.4E-06 60.8 57.4 198 36-283 37-239 (628)
256 2ad6_A Methanol dehydrogenase 97.7 0.054 1.8E-06 64.9 35.3 111 88-216 62-192 (571)
257 1fwx_A Nitrous oxide reductase 97.7 0.0011 3.7E-08 78.0 19.5 162 36-209 134-361 (595)
258 2kog_A Vesicle-associated memb 97.7 3E-06 1E-10 77.2 -2.1 48 1045-1092 44-91 (119)
259 3ei3_A DNA damage-binding prot 97.6 0.4 1.4E-05 62.1 55.0 133 57-208 492-635 (1158)
260 2iwa_A Glutamine cyclotransfer 97.6 0.021 7.2E-07 60.6 25.6 167 69-283 11-183 (266)
261 3nok_A Glutaminyl cyclase; bet 97.5 0.0033 1.1E-07 66.1 18.7 174 25-218 42-219 (268)
262 3mbr_X Glutamine cyclotransfer 97.5 0.018 6.2E-07 59.9 23.8 168 68-284 10-182 (243)
263 2hz6_A Endoplasmic reticulum t 97.5 3.3E-05 1.1E-09 87.9 3.4 142 87-282 8-150 (369)
264 3nol_A Glutamine cyclotransfer 97.5 0.0095 3.2E-07 62.6 21.8 168 68-284 32-204 (262)
265 1w6s_A Methanol dehydrogenase 97.5 0.046 1.6E-06 65.6 30.6 113 88-216 62-198 (599)
266 3b5n_A Synaptobrevin homolog 1 97.5 0.00013 4.5E-09 58.1 5.5 46 1047-1092 15-60 (61)
267 3nok_A Glutaminyl cyclase; bet 97.5 0.011 3.7E-07 62.2 21.6 166 68-283 44-212 (268)
268 1kv9_A Type II quinohemoprotei 97.4 0.028 9.4E-07 68.9 27.3 60 623-708 436-495 (668)
269 1npe_A Nidogen, entactin; glyc 97.4 0.043 1.5E-06 58.5 25.9 159 36-216 79-245 (267)
270 2xe4_A Oligopeptidase B; hydro 97.4 0.0059 2E-07 76.1 21.4 113 37-150 175-304 (751)
271 2p4o_A Hypothetical protein; p 97.4 0.023 7.8E-07 62.2 23.9 209 28-280 24-241 (306)
272 2fp8_A Strictosidine synthase; 97.3 0.019 6.4E-07 63.4 22.7 199 36-281 80-313 (322)
273 1flg_A Protein (quinoprotein e 97.3 0.17 5.9E-06 60.6 31.8 59 624-708 465-523 (582)
274 1ijq_A LDL receptor, low-densi 97.3 0.13 4.5E-06 56.4 28.5 199 36-282 30-239 (316)
275 3hxj_A Pyrrolo-quinoline quino 97.1 0.0087 3E-07 65.9 17.2 175 47-279 107-282 (330)
276 1flg_A Protein (quinoprotein e 97.1 0.39 1.3E-05 57.4 32.5 115 89-216 69-200 (582)
277 3v65_B Low-density lipoprotein 97.1 0.11 3.8E-06 58.8 26.3 199 36-282 116-319 (386)
278 3v64_C Agrin; beta propeller, 97.1 0.19 6.5E-06 55.9 27.7 158 37-211 74-236 (349)
279 1gl2_A Endobrevin; membrane pr 97.1 0.00049 1.7E-08 55.5 4.4 57 1030-1089 8-64 (65)
280 3amr_A 3-phytase; beta-propell 97.1 0.14 4.9E-06 56.1 25.3 190 44-280 37-262 (355)
281 3p5b_L Low density lipoprotein 97.0 0.17 6E-06 57.5 27.5 159 35-212 111-280 (400)
282 3tc9_A Hypothetical hydrolase; 97.0 0.02 6.8E-07 66.0 18.8 155 37-209 138-301 (430)
283 3sov_A LRP-6, low-density lipo 96.9 0.14 4.8E-06 56.2 24.7 196 37-283 36-240 (318)
284 3m0c_C LDL receptor, low-densi 96.8 0.23 7.9E-06 61.5 27.4 160 36-212 424-592 (791)
285 4hw6_A Hypothetical protein, I 96.8 0.33 1.1E-05 55.7 26.9 226 37-280 140-432 (433)
286 1k3i_A Galactose oxidase precu 96.8 0.087 3E-06 64.4 23.3 116 37-154 187-327 (656)
287 2p4o_A Hypothetical protein; p 96.7 0.16 5.4E-06 55.3 23.1 192 33-272 69-279 (306)
288 3amr_A 3-phytase; beta-propell 96.7 0.087 3E-06 57.7 20.0 183 18-216 51-271 (355)
289 3qqz_A Putative uncharacterize 96.6 0.35 1.2E-05 50.8 23.3 174 74-281 24-204 (255)
290 1k3i_A Galactose oxidase precu 96.6 0.14 4.9E-06 62.5 23.6 119 121-282 189-324 (656)
291 3v64_C Agrin; beta propeller, 96.5 0.42 1.4E-05 53.1 25.1 196 35-281 33-234 (349)
292 2p9w_A MAL S 1 allergenic prot 96.4 0.1 3.5E-06 56.7 18.3 158 38-209 15-215 (334)
293 3v65_B Low-density lipoprotein 96.4 0.56 1.9E-05 52.9 25.1 193 37-280 78-276 (386)
294 2ad6_A Methanol dehydrogenase 96.3 0.18 6.1E-06 60.3 21.7 72 81-154 239-339 (571)
295 3tc9_A Hypothetical hydrolase; 96.3 0.11 3.8E-06 59.7 19.1 158 78-280 138-300 (430)
296 2xbg_A YCF48-like protein; pho 96.0 0.46 1.6E-05 52.2 21.6 196 34-279 120-320 (327)
297 3pbp_A Nucleoporin NUP82; beta 96.0 0.28 9.5E-06 54.9 19.0 161 85-277 29-208 (452)
298 3kya_A Putative phosphatase; s 95.9 0.99 3.4E-05 52.2 24.2 157 37-209 140-341 (496)
299 1ijq_A LDL receptor, low-densi 95.8 2.7 9.2E-05 45.7 26.3 183 49-281 3-195 (316)
300 2xe4_A Oligopeptidase B; hydro 95.6 0.55 1.9E-05 58.2 22.2 112 38-149 223-353 (751)
301 2nut_C Vesicle-trafficking pro 95.6 0.002 6.7E-08 65.4 -0.1 45 1051-1099 151-195 (196)
302 1n7d_A LDL receptor, low-densi 95.5 0.027 9.3E-07 69.3 9.7 157 36-211 406-573 (699)
303 1w6s_A Methanol dehydrogenase 95.5 0.35 1.2E-05 57.9 19.0 168 41-216 111-349 (599)
304 4b93_A Vesicle-associated memb 95.3 0.00048 1.6E-08 69.3 -6.0 41 1055-1099 146-186 (189)
305 3kya_A Putative phosphatase; s 95.2 0.35 1.2E-05 56.0 17.1 116 79-208 141-277 (496)
306 3p5b_L Low density lipoprotein 95.1 4.3 0.00015 45.7 25.9 193 38-281 75-277 (400)
307 3sov_A LRP-6, low-density lipo 95.1 1.2 4E-05 48.7 20.3 155 37-211 80-240 (318)
308 3m0c_C LDL receptor, low-densi 94.8 3.2 0.00011 51.2 25.3 195 36-281 385-589 (791)
309 4hw6_A Hypothetical protein, I 94.5 0.76 2.6E-05 52.7 17.6 156 79-280 141-303 (433)
310 4a0p_A LRP6, LRP-6, low-densit 94.2 13 0.00044 44.6 53.3 182 49-281 8-197 (628)
311 2p9w_A MAL S 1 allergenic prot 93.7 2 6.8E-05 46.6 17.5 170 79-280 15-214 (334)
312 3pbp_A Nucleoporin NUP82; beta 93.5 0.45 1.5E-05 53.2 12.3 104 37-141 67-205 (452)
313 2xzh_A Clathrin heavy chain 1; 93.5 9.7 0.00033 41.0 24.7 116 40-164 71-199 (365)
314 2xbg_A YCF48-like protein; pho 93.4 2.1 7E-05 46.9 17.7 153 33-206 160-319 (327)
315 3ott_A Two-component system se 93.3 20 0.00068 44.0 53.1 190 36-277 103-303 (758)
316 3ott_A Two-component system se 93.3 20 0.0007 43.9 53.4 193 36-282 63-261 (758)
317 3sre_A PON1, serum paraoxonase 93.1 13 0.00043 41.0 25.9 153 36-209 50-252 (355)
318 3a9g_A Putative uncharacterize 92.4 1.8 6E-05 48.1 15.4 108 23-133 18-150 (354)
319 3s94_A LRP-6, low-density lipo 90.0 38 0.0013 40.4 50.8 179 54-281 15-202 (619)
320 2g8s_A Glucose/sorbosone dehyd 89.9 4.6 0.00016 44.6 15.6 111 23-136 7-147 (353)
321 1n7d_A LDL receptor, low-densi 89.6 0.46 1.6E-05 58.2 7.6 161 38-216 455-621 (699)
322 3sre_A PON1, serum paraoxonase 89.5 28 0.00095 38.2 21.5 154 79-280 52-251 (355)
323 3kyq_A YKT6, synaptobrevin hom 88.9 0.031 1.1E-06 56.2 -2.9 36 1053-1088 157-192 (199)
324 1bpo_A Protein (clathrin); cla 88.9 34 0.0012 38.4 26.9 209 40-283 70-333 (494)
325 2ism_A Putative oxidoreductase 87.7 5 0.00017 44.3 13.9 110 22-136 19-152 (352)
326 2xzh_A Clathrin heavy chain 1; 87.7 34 0.0011 36.9 31.4 75 606-705 262-336 (365)
327 2ism_A Putative oxidoreductase 87.3 15 0.0005 40.4 17.5 60 36-95 75-153 (352)
328 1cru_A Protein (soluble quinop 86.7 27 0.00092 39.9 19.7 60 78-137 28-99 (454)
329 1cru_A Protein (soluble quinop 86.6 11 0.00037 43.2 16.3 110 23-134 16-160 (454)
330 2vpj_A Kelch-like protein 12; 84.9 27 0.00093 36.8 17.8 152 46-215 62-237 (301)
331 3s25_A Hypothetical 7-bladed b 84.6 43 0.0015 35.7 19.0 141 45-215 23-182 (302)
332 2xn4_A Kelch-like protein 2; s 84.3 31 0.0011 36.5 17.9 152 46-215 61-235 (302)
333 3das_A Putative oxidoreductase 84.1 15 0.0005 40.3 15.0 98 37-134 33-156 (347)
334 1bpo_A Protein (clathrin); cla 84.0 61 0.0021 36.4 30.9 75 606-705 261-335 (494)
335 2vpj_A Kelch-like protein 12; 83.6 34 0.0012 36.1 17.9 151 47-215 15-190 (301)
336 3ii7_A Kelch-like protein 7; p 83.5 20 0.0007 38.0 16.0 109 46-155 55-183 (306)
337 3uc1_A DNA gyrase subunit A; D 83.1 55 0.0019 35.3 22.5 163 36-209 95-279 (327)
338 1tl2_A L10, protein (tachylect 81.7 11 0.00038 38.2 11.5 132 47-202 4-156 (236)
339 3a9g_A Putative uncharacterize 81.5 41 0.0014 36.8 17.7 58 78-137 30-95 (354)
340 3kci_A Probable E3 ubiquitin-p 81.2 72 0.0025 35.3 27.6 198 48-281 11-241 (389)
341 1tl2_A L10, protein (tachylect 80.8 1.8 6.3E-05 43.8 5.5 98 37-141 42-156 (236)
342 1xi4_A Clathrin heavy chain; a 79.7 28 0.00097 45.1 16.7 105 40-147 70-187 (1630)
343 2g8s_A Glucose/sorbosone dehyd 79.0 29 0.001 38.0 15.4 60 78-137 19-88 (353)
344 1xi4_A Clathrin heavy chain; a 78.4 89 0.0031 40.6 20.6 75 607-706 262-336 (1630)
345 2be1_A Serine/threonine-protei 77.5 6.8 0.00023 42.8 9.3 82 614-709 55-138 (339)
346 2xn4_A Kelch-like protein 2; s 75.1 86 0.0029 32.9 17.8 106 48-155 17-138 (302)
347 1zgk_A Kelch-like ECH-associat 73.2 69 0.0024 33.8 16.3 148 46-213 24-197 (308)
348 3no0_A DNA gyrase subunit A; D 72.8 97 0.0033 32.4 19.7 162 35-209 67-246 (276)
349 3s25_A Hypothetical 7-bladed b 72.3 1E+02 0.0036 32.6 20.8 107 41-154 109-220 (302)
350 4gq2_M Nucleoporin NUP120; bet 70.9 33 0.0011 43.2 14.6 38 78-115 237-274 (950)
351 1suu_A DNA gyrase subunit A; t 70.3 1.2E+02 0.004 32.4 21.5 199 45-280 6-230 (312)
352 3b7f_A Glycosyl hydrolase, BNR 69.9 61 0.0021 35.8 15.3 156 35-200 54-254 (394)
353 1zgk_A Kelch-like ECH-associat 68.4 91 0.0031 32.9 15.8 98 98-213 137-244 (308)
354 2woz_A Kelch repeat and BTB do 68.4 1.2E+02 0.0042 31.9 17.7 111 44-155 54-189 (318)
355 3sbq_A Nitrous-oxide reductase 67.2 17 0.00057 42.1 9.4 104 33-136 320-453 (638)
356 3ii7_A Kelch-like protein 7; p 66.5 1.1E+02 0.0036 32.2 15.9 150 46-213 101-276 (306)
357 2be1_A Serine/threonine-protei 64.4 23 0.00079 38.5 9.8 116 89-218 11-139 (339)
358 4asc_A Kelch repeat and BTB do 61.6 1.6E+02 0.0056 30.9 22.1 155 42-214 41-226 (315)
359 3b7f_A Glycosyl hydrolase, BNR 61.5 1.8E+02 0.0061 31.9 17.1 145 37-197 116-297 (394)
360 4asc_A Kelch repeat and BTB do 58.4 1.8E+02 0.0063 30.5 17.3 139 57-213 13-178 (315)
361 3sbq_A Nitrous-oxide reductase 55.8 83 0.0028 36.5 12.4 88 112-210 317-409 (638)
362 2zwa_A Leucine carboxyl methyl 54.3 2.4E+02 0.0082 33.9 17.6 111 45-155 396-527 (695)
363 4gq2_M Nucleoporin NUP120; bet 54.1 4.1E+02 0.014 33.2 25.5 134 80-216 114-273 (950)
364 2uvk_A YJHT; unknown function, 53.7 2.3E+02 0.0079 30.3 16.1 39 98-137 168-209 (357)
365 3kci_A Probable E3 ubiquitin-p 52.3 2.7E+02 0.0091 30.5 28.5 149 47-208 62-240 (389)
366 2wg3_C Hedgehog-interacting pr 49.7 1.4E+02 0.0049 33.8 13.6 97 37-133 15-154 (463)
367 2zwa_A Leucine carboxyl methyl 49.0 2.2E+02 0.0075 34.2 16.0 66 87-152 500-579 (695)
368 3mvd_K Regulator of chromosome 46.9 3.3E+02 0.011 30.0 28.6 135 53-208 39-206 (423)
369 2woz_A Kelch repeat and BTB do 46.2 2.8E+02 0.0096 29.0 16.6 108 46-154 109-235 (318)
370 4fhn_B Nucleoporin NUP120; pro 46.1 48 0.0016 42.8 9.9 38 78-115 239-276 (1139)
371 3qhy_B Beta-lactamase inhibito 45.5 1.4E+02 0.0046 31.3 11.9 142 37-209 103-246 (282)
372 1sqj_A OXG-RCBH, oligoxylogluc 44.9 5E+02 0.017 31.5 18.7 151 35-199 14-190 (789)
373 3l6v_A GYRA, DNA gyrase subuni 40.7 3.9E+02 0.013 29.1 21.1 112 36-147 99-264 (370)
374 4d9s_A UVB-resistance protein 37.7 4.4E+02 0.015 28.9 36.4 308 35-406 15-356 (406)
375 2uvk_A YJHT; unknown function, 36.2 4.2E+02 0.014 28.1 14.9 26 189-214 316-347 (357)
376 3das_A Putative oxidoreductase 34.8 4.6E+02 0.016 28.2 28.7 33 177-212 32-65 (347)
377 3etw_A Adhesin A; antiparallel 34.1 54 0.0018 29.3 5.1 48 1048-1095 34-83 (119)
378 3f7f_A Nucleoporin NUP120; nuc 32.6 1.4E+02 0.0047 35.8 9.9 36 79-116 224-259 (729)
379 3qhy_B Beta-lactamase inhibito 30.8 4.7E+02 0.016 27.0 18.2 141 37-208 64-206 (282)
380 3hd7_A Vesicle-associated memb 29.0 78 0.0027 26.9 5.2 52 1048-1099 12-66 (91)
381 2l5g_B Putative uncharacterize 28.3 61 0.0021 22.9 3.4 25 1047-1071 15-39 (42)
382 3efd_K KCSA; helix bundle, C-t 28.1 65 0.0022 20.3 3.1 20 1048-1067 7-26 (30)
383 3b5n_A Synaptobrevin homolog 1 27.0 1E+02 0.0036 23.8 5.2 47 1048-1094 9-55 (61)
384 3ryc_E Stathmin-4; alpha-tubul 26.3 1.9E+02 0.0064 26.7 7.4 63 1029-1094 41-105 (143)
385 2avr_X Adhesion A; antiparalle 24.7 1.1E+02 0.0038 27.1 5.4 48 1047-1094 33-82 (119)
386 1n7s_A Vesicle-associated memb 24.6 1.2E+02 0.0041 23.6 5.2 47 1048-1094 11-57 (63)
387 3no0_A DNA gyrase subunit A; D 24.1 6E+02 0.021 26.1 22.0 207 35-280 23-245 (276)
388 3uc1_A DNA gyrase subunit A; D 23.8 6.7E+02 0.023 26.6 24.7 211 37-280 43-278 (327)
389 2wg3_C Hedgehog-interacting pr 22.8 7.3E+02 0.025 27.8 13.7 58 489-547 19-79 (463)
390 1zvt_A Topoisomerase IV subuni 22.7 6.2E+02 0.021 25.7 15.5 149 49-209 4-163 (256)
391 1gl2_A Endobrevin; membrane pr 21.7 1.9E+02 0.0065 22.6 5.8 49 1047-1095 15-63 (65)
392 3of7_A Regulator of chromosome 20.0 9.3E+02 0.032 26.8 30.7 125 123-281 151-285 (473)
No 1
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-67 Score=671.33 Aligned_cols=778 Identities=15% Similarity=0.189 Sum_probs=554.2
Q ss_pred cccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcE
Q 001321 21 AADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1100)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I 100 (1100)
++.|++++.+++||++.|+|++|+|++++||+|+.||.|+||+....+......|..+|.+|+|+| +.+|++++.|++|
T Consensus 3 ~~~~~~~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 3 NKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp CTTEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred hheeeeccccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 578999999999999999999999999999999999999999999888888888999999999999 6799999999999
Q ss_pred EEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 101 QVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
++||+.+++.+..+.+.+.|++++|+|+++++++|+.||+|++|+++. +.+. +|.++..+ +.......+.++|.
T Consensus 82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~--~~~~--~~~i~~~~--~~~~~~~~h~~~V~ 155 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR--DQLS--SFKLDNLQ--KSSFFPAARLSPIV 155 (902)
T ss_dssp EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTT--TEEE--EEEECCHH--HHHTCSSSCCCCCC
T ss_pred EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC--Cccc--cceecccc--ccccccccCCCCeE
Confidence 999999999998888889999999999999999999999999999874 3432 34443211 00011234558999
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
+|+|+|. ++..+++|+.||.| +||+.+++....+.+ ... .+.+...... .....+...|++++|. |
T Consensus 156 sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~-------~~~---~g~~~~~~~~-~~~~~h~~~V~~v~fs-p 221 (902)
T 2oaj_A 156 SIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIY-------ELP---PFAPGGDFSE-KTNEKRTPKVIQSLYH-P 221 (902)
T ss_dssp EEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECC-------CBC---TTCCCSTTCC-CTTSCBCCCEEEEEEC-T
T ss_pred EEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEec-------ccC---CcCCCccccc-ccccccCCCeEEEEEc-C
Confidence 9999995 34569999999999 999999987765543 110 1111111100 1111225789999996 9
Q ss_pred CCCEEEEEEcCCcEEEEecCCCCCCCCccc---CCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCC
Q 001321 261 SGSILAVGYIDGDILLWNTSTTASTKGQQT---GSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI 337 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~ 337 (1100)
+|.+|++|+.||.|++||+.+++....+.- ....+........-....++..+.|++.. .+.++.++++|+.+.
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~---~pd~~~ll~sg~~~~ 298 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN---NPEYTSLLISHKSIS 298 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS---STTEEEEEEEEECST
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC---CCCCCEEEEeCCCCC
Confidence 999999999999999999987743221000 00000000000000123468888887753 444567888887654
Q ss_pred CC-cceEEEEEcCCccc------------cccceeeeeeeecCCCcceeEEEccCCCC--CCCCCcceEEEEecCCeeeE
Q 001321 338 GS-EEVLTVLSLEWSSG------------MENLRCVSRVDITLTGSFADMILLSSAGA--TVGNHKADLFVLTSPGQLHF 402 (1100)
Q Consensus 338 g~-~~~ltvl~l~~~~~------------~~~~~~~~~~~l~~~~~v~d~~~~p~~~~--~~~~~~~~l~vl~~~G~l~~ 402 (1100)
+. ...+.++.+..+.. .....+...+.+.....+.++.+.++.++ .+.+++..+++++.+|.+.+
T Consensus 299 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 299 RGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp TSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence 33 24555655432110 00111222333445678999999986554 35567778888999999999
Q ss_pred eecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCc
Q 001321 403 YDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGV 482 (1100)
Q Consensus 403 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~ 482 (1100)
|+.... .........+..+..+.+.++++.+...+. ..|....... ....|++.|+.
T Consensus 379 ~~~~~g---------~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----~~w~~~~~~~---------~~~~~~l~G~~ 435 (902)
T 2oaj_A 379 MLYPSG---------IFTDKASLFPQNLSWLRPLATTSMAASVPN-----KLWLGALSAA---------QNKDYLLKGGV 435 (902)
T ss_dssp EETTTC---------CEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----HHHHHHHHTT---------BCCCCSCCCSB
T ss_pred EECCCC---------CcccccccCCCcccccCCCeeEEEEEEcCH-----HHHHHHHhcc---------cCCCCcccCCc
Confidence 984221 111122334566777889999988876542 3677655432 12245777766
Q ss_pred ccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeee-----cCCCCCeeEEEEeeCCCeEEEEecC
Q 001321 483 PSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-----AGSRAPVSTLSFCFINSSLAVGNEF 557 (1100)
Q Consensus 483 ~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l-----~~h~~~Vt~lafspd~~~Lasg~~d 557 (1100)
... ..++++|++++|+||+.||+||+||+..+.+.. ..+....+ .+|...|++|+|+||+++||+|+.|
T Consensus 436 ~~v-~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~-----~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D 509 (902)
T 2oaj_A 436 RTK-RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD-----NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET 509 (902)
T ss_dssp CCC-CCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT-----TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT
T ss_pred CCC-CcccccccCcEEEEecCCCcEEEEECCCccccC-----CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC
Confidence 543 445899999999999999999999999886421 01111222 2888999999999999999999999
Q ss_pred ceEEEEEecCCCC----------Ccceeee----ccCCCceeecc------CCCcceeEEEEeecCcCeEEEEEcCCCCE
Q 001321 558 GLVYIYNLNGSLD----------AKNFLFV----LETKSEVHALP------EGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1100)
Q Consensus 558 G~V~lw~l~~~~~----------~~~~~~~----~~~~~~~~~i~------~~~~~~~~~~~~~h~~~VtsLafSp~g~~ 617 (1100)
|+|+||++.+... +.+..|. .........+. ...+++++..+.+|.++|++|+||||| +
T Consensus 510 gtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~ 588 (902)
T 2oaj_A 510 GDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-F 588 (902)
T ss_dssp SCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-E
T ss_pred cEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-E
Confidence 9999999987531 1111110 01111111111 123577888899999999999999999 9
Q ss_pred EEEEeCCceEEEEecCCceEEEEee--cCC-CCCCCeEEEEEe--ecccCccccCCCCCCCCCCCCCCCceEEEEEecce
Q 001321 618 LAVGFECGRVAVLDMNLLSVLFFTD--DIS-GSSSPIISMTWT--EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDA 692 (1100)
Q Consensus 618 LavGs~dG~V~vwD~~~~~~~~~~~--~~~-~~~~~V~sl~fs--~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg 692 (1100)
||+|+.||+|+|||++++.+++... .+. +|.+.|++|+|+ .++.+ ++++.+|++|+.||
T Consensus 589 lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~D----------------g~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 589 VGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDD----------------GYSSILMVCGTDMG 652 (902)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTS----------------SSEEEEEEEEETTS
T ss_pred EEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCC----------------CCcceEEEEEecCC
Confidence 9999999999999999999887533 343 899999999999 22222 35578999999999
Q ss_pred eEEEEeCCCCccccCCccccCCCceeEEEEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccc--
Q 001321 693 KISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSE-- 770 (1100)
Q Consensus 693 ~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-- 770 (1100)
+|++|| +.|...+ .+...+.+.. . .+.++ +| ..+.+|+.+++..+.
T Consensus 653 tv~~wd-----------~~p~~~g-~~~~~~~~~~------~----------~~~~~-~v---~~i~~~~~~~~~~~~a~ 700 (902)
T 2oaj_A 653 EVITYK-----------ILPASGG-KFDVQLMDIT------N----------VTSKG-PI---HKIDAFSKETKSSCLAT 700 (902)
T ss_dssp EEEEEE-----------EEECGGG-CEEEEEEEEE------E----------CCSSC-CC---CEEEEEETTTCCBCBCB
T ss_pred cEEEEE-----------EecCCCC-cEEEEecCce------e----------cCCCC-ce---EEEEeEecCCCCcccCC
Confidence 999999 5555444 2323322211 0 11222 55 456666655555443
Q ss_pred ----cccCCCCCCCCEEEEEecCeeEEEeccccee-ecccccccceeee--ee------cCCceEEEEEEEecCcEEEee
Q 001321 771 ----NACSGESSNDALVLLCCEDSVRLYSRKSVIQ-KVKHKNRCCWAST--IE------KDEKVCGLLLLFQTGAVQIRS 837 (1100)
Q Consensus 771 ----~~~~~~~~~~~~~~~cse~~vrl~sl~~~~~-~~~~~~~c~~~~~--~~------~~~~~~~l~~~~~~G~i~i~s 837 (1100)
..++++...++++++|+|+++|||++++.+. ++.+...|++..+ +. ...++++|+++++||+|+|||
T Consensus 701 ~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 701 IPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFT 780 (902)
T ss_dssp HHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEE
T ss_pred HHHHhccCCCCCCCeEEEEEeccceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEE
Confidence 2556677779999999999999999999877 3334447887776 44 356789999999999999999
Q ss_pred cCChhhhhhccccceeeeeeccccccceeec-CCcEEEEcc-eeEEEEEeecCCCcccccCCCccchhhhh
Q 001321 838 LPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFVNLLAGENEFSILESSPCLHDKVL 906 (1100)
Q Consensus 838 lp~l~~~~~~~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g-~e~~~~s~~~~~~~~~~~~~~~~~~~~~~ 906 (1100)
||+||.+...++..+++.++ ++..+|+ +|++++..| .|+++++++.++..++.+ ...||.+..
T Consensus 781 ~p~l~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~l~~~~~ 845 (902)
T 2oaj_A 781 IPDFKEQMSEHIPFPIAAKY----ITESSVLRNGDIAIRVSEFQASLFSTVKEQDTLAPV--SDTLYINGI 845 (902)
T ss_dssp TTTCCEEEEEECSSCCCHHH----HTTCEECTTSCEEEECSSSEEEEEEEESCCCCCCCC--CCBCCCTTC
T ss_pred CcchHHHhhccCCccccccc----ccceEEcCCCCEEEEeChhheEEEEEEcCCCCCCCC--CceeeCCCC
Confidence 99999999988877666443 4566899 999999998 999999999998888755 377888743
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-46 Score=460.77 Aligned_cols=556 Identities=14% Similarity=0.204 Sum_probs=407.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
..||.+.|+|+||+|++++||+|+.||.|+|||.++..+..+.+|..+|++|+|+||+.+|++++.|++|+|||+..+.+
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~ 91 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 91 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEE
Confidence 46999999999999999999999999999999998777778889999999999999999999999999999999765544
Q ss_pred eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.....|.+.|.+++|+|+++++++++.++.+++|+... ... .....+. ..|.++.++| ++
T Consensus 92 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~---~~~---~~~~~~~------------~~v~~~~~~~--~~ 151 (577)
T 2ymu_A 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLL---QTLTGHS------------SSVWGVAFSP--DG 151 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---CEE---EEECCCS------------SCEEEEEECT--TS
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccc---cee---eeccCCC------------Cceeeeeeec--CC
Confidence 44447889999999999999999999999999998652 222 2234333 7899999988 56
Q ss_pred CEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc
Q 001321 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~ 270 (1100)
..++.++.++.+++|+...........| ...|.+++|. |++.++++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~ 200 (577)
T 2ymu_A 152 QTIASASDDKTVKLWNRNGQLLQTLTGH------------------------------SSSVWGVAFS-PDGQTIASASD 200 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEET
T ss_pred ccceecccccceeccccceeeeeeccCC------------------------------Ccceeeeeec-CCCCEEEEEcC
Confidence 6799999999999999887776666665 7789999985 99999999999
Q ss_pred CCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCC
Q 001321 271 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 350 (1100)
Q Consensus 271 DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~ 350 (1100)
||.|++||.... ....+.. ...++..+ +..+++.++++++.++ .+.+|.
T Consensus 201 d~~v~~w~~~~~------------~~~~~~~----~~~~v~~~--------~~s~dg~~l~~~~~d~-------~i~~w~ 249 (577)
T 2ymu_A 201 DKTVKLWNRNGQ------------LLQTLTG----HSSSVRGV--------AFSPDGQTIASASDDK-------TVKLWN 249 (577)
T ss_dssp TSEEEEECTTSC------------EEEEEEC----CSSCEEEE--------EECTTSSCEEEEETTS-------CEEEEC
T ss_pred CCEEEEEeCCCc------------EEEEEec----CCCCEEEE--------EECCCCCEEEEEeCCC-------EEEEEe
Confidence 999999996421 1111111 12233333 2556778888888776 566665
Q ss_pred ccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccc
Q 001321 351 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1100)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 430 (1100)
..+. .+ .........+..+.+.|+.. .++..+.++.+.+|+.......
T Consensus 250 ~~~~-~~----~~~~~~~~~v~~v~~~~d~~--------~l~~~~~d~~i~~w~~~~~~~~------------------- 297 (577)
T 2ymu_A 250 RNGQ-LL----QTLTGHSSSVNGVAFRPDGQ--------TIASASDDKTVKLWNRNGQLLQ------------------- 297 (577)
T ss_dssp TTSC-EE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEE-------------------
T ss_pred CCCC-EE----EEEecCCCCEEEEEEcCCCC--------EEEEEeCCCEEEEEeCCCcEEE-------------------
Confidence 4321 11 11122345777888877632 5666677888888773211000
Q ss_pred ccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEe
Q 001321 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 510 (1100)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriW 510 (1100)
...|+...+..++++|+++++++++.||+|++|
T Consensus 298 -----------------------------------------------~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 298 -----------------------------------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp -----------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -----------------------------------------------EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 001222333455788999999999999999999
Q ss_pred eCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCC
Q 001321 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1100)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~ 590 (1100)
|.....+. .+.+|...|++++|+|++++|++|+.||.|++|+....
T Consensus 331 ~~~~~~~~------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------------------- 376 (577)
T 2ymu_A 331 NRNGQHLQ------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------------------- 376 (577)
T ss_dssp ETTSCEEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------------------
T ss_pred eCCCCeeE------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------------------
Confidence 98766543 35688899999999999999999999999999996542
Q ss_pred CcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCC
Q 001321 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1100)
Q Consensus 591 ~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~ 670 (1100)
++..+.+|..+|++++|+|+|++||+|+.|+.|++||..+ +.+ ..+.+|...|++++|++++
T Consensus 377 ----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~---~~~~~~~~~v~~~~~s~d~---------- 438 (577)
T 2ymu_A 377 ----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLL---QTLTGHSSSVWGVAFSPDD---------- 438 (577)
T ss_dssp ----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CEE---EEEECCSSCEEEEEECTTS----------
T ss_pred ----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEE---EEecCCCCCeEEEEECCCC----------
Confidence 4567789999999999999999999999999999999764 433 2345799999999998544
Q ss_pred CCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEecccCCCCccchhhhhhhhhhccCCCC
Q 001321 671 HSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPT 750 (1100)
Q Consensus 671 ~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1100)
.+|++++.|+.|.+||. ++..+.. +.+. ..
T Consensus 439 ------------~~l~~~~~d~~v~~w~~-~~~~~~~----------------~~~~--------------------~~- 468 (577)
T 2ymu_A 439 ------------QTIASASDDKTVKLWNR-NGQLLQT----------------LTGH--------------------SS- 468 (577)
T ss_dssp ------------SEEEEEETTSEEEEEET-TSCEEEE----------------EECC--------------------SS-
T ss_pred ------------CEEEEEcCCCEEEEEEC-CCCEEEE----------------EcCC--------------------CC-
Confidence 45999999999999993 3322111 1000 00
Q ss_pred CCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEeccccee-ecc-cc-c--ccceeeeeecCCceEEE
Q 001321 751 PDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ-KVK-HK-N--RCCWASTIEKDEKVCGL 824 (1100)
Q Consensus 751 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~~-~~~-~~-~--~c~~~~~~~~~~~~~~l 824 (1100)
+| ....++ +...+++++++| .|+||+...... ... .. . .++|+| .+..|
T Consensus 469 ~v----------------~~~~~s---pd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~------dg~~l 523 (577)
T 2ymu_A 469 SV----------------RGVAFS---PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP------DGQTI 523 (577)
T ss_dssp CE----------------EEEEEC---TTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT------TSSCE
T ss_pred CE----------------EEEEEc---CCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcC------CCCEE
Confidence 11 000111 115677777776 999999754322 111 11 1 346765 55678
Q ss_pred EEEEecCcEEEeecCChhhhhhccccceeeeeeccccccceeec-CCcEEEEcc-eeEEEE
Q 001321 825 LLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 883 (1100)
Q Consensus 825 ~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g-~e~~~~ 883 (1100)
++...||.|+||+++. +.+ .. ..-+.+.+..++|| ||+.+++.| +..++|
T Consensus 524 ~s~~~dg~v~lwd~~~-~~~-----~~---~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 524 ASASDDKTVKLWNRNG-QLL-----QT---LTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp EEEETTSEEEEECTTS-CEE-----EE---EECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEEECcCEEEEEeCCC-CEE-----EE---EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 8999999999999764 211 11 11235668899999 999988887 655443
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-42 Score=426.52 Aligned_cols=519 Identities=14% Similarity=0.202 Sum_probs=386.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
..||.+.|++++|+|++++||+|+.||.|+|||..+..+....+|..+|.+++|+|++.+|++++.|+.+++|+......
T Consensus 53 l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~ 132 (577)
T 2ymu_A 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 132 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE
T ss_pred EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee
Confidence 35899999999999999999999999999999998888888889999999999999999999999999999999988877
Q ss_pred eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.....+...|.++.++|++..++.+..++.+++|..+. ... .....+. ..|.++.|+| ++
T Consensus 133 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~------------~~v~~~~~~~--~~ 192 (577)
T 2ymu_A 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG---QLL---QTLTGHS------------SSVWGVAFSP--DG 192 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---CEE---EEEECCS------------SCEEEEEECT--TS
T ss_pred eeccCCCCceeeeeeecCCccceecccccceeccccce---eee---eeccCCC------------cceeeeeecC--CC
Confidence 77778889999999999999999999999998887542 222 1133333 7899999988 67
Q ss_pred CEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc
Q 001321 191 NRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~ 270 (1100)
.++++++.|+.|++||.....+....+| ...|.+++|. |+|.+|++++.
T Consensus 193 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~------------------------------~~~v~~~~~s-~dg~~l~~~~~ 241 (577)
T 2ymu_A 193 QTIASASDDKTVKLWNRNGQLLQTLTGH------------------------------SSSVRGVAFS-PDGQTIASASD 241 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEET
T ss_pred CEEEEEcCCCEEEEEeCCCcEEEEEecC------------------------------CCCEEEEEEC-CCCCEEEEEeC
Confidence 7899999999999999876666666666 7889999985 99999999999
Q ss_pred CCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCC
Q 001321 271 DGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEW 350 (1100)
Q Consensus 271 DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~ 350 (1100)
||.|++||.... .+..+. ....++..+ +..+++..+++++.+. .+.+|.
T Consensus 242 d~~i~~w~~~~~------------~~~~~~----~~~~~v~~v--------~~~~d~~~l~~~~~d~-------~i~~w~ 290 (577)
T 2ymu_A 242 DKTVKLWNRNGQ------------LLQTLT----GHSSSVNGV--------AFRPDGQTIASASDDK-------TVKLWN 290 (577)
T ss_dssp TSCEEEECTTSC------------EEEEEC----CCSSCEEEE--------EECTTSSEEEEEETTS-------CEEEEE
T ss_pred CCEEEEEeCCCC------------EEEEEe----cCCCCEEEE--------EEcCCCCEEEEEeCCC-------EEEEEe
Confidence 999999996421 111111 012233333 2456778888887776 455554
Q ss_pred ccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccc
Q 001321 351 SSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVI 430 (1100)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~ 430 (1100)
..+. .+ +........+..+.+.|+.. .++....+|.+.+|+........
T Consensus 291 ~~~~-~~----~~~~~h~~~v~~~~~~~~~~--------~l~t~~~d~~i~~w~~~~~~~~~------------------ 339 (577)
T 2ymu_A 291 RNGQ-LL----QTLTGHSSSVWGVAFSPDGQ--------TIASASDDKTVKLWNRNGQHLQT------------------ 339 (577)
T ss_dssp TTSC-EE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTSCEEEE------------------
T ss_pred CCCc-EE----EEEecCCCCeEEEEECCCCC--------EEEEEeCCCeEEEEeCCCCeeEE------------------
Confidence 3321 11 11123345788888887642 56666778888888732211100
Q ss_pred ccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEe
Q 001321 431 PISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIW 510 (1100)
Q Consensus 431 ~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriW 510 (1100)
..++...+.+++++|+++++++|+.||+|++|
T Consensus 340 ------------------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 340 ------------------------------------------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp ------------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ------------------------------------------------EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 01122233445788999999999999999999
Q ss_pred eCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCC
Q 001321 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1100)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~ 590 (1100)
|.....+ ..+.+|...|++++|+|++++|++++.||.|++|+....
T Consensus 372 ~~~~~~~------------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~---------------------- 417 (577)
T 2ymu_A 372 NRNGQLL------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ---------------------- 417 (577)
T ss_dssp ETTCCEE------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC----------------------
T ss_pred cCCCCEE------------EEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------------------
Confidence 9754332 236688899999999999999999999999999985432
Q ss_pred CcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCC
Q 001321 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPN 670 (1100)
Q Consensus 591 ~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~ 670 (1100)
++..+.+|..+|++++|+|++++|++|+.|++|++||..+..+. .+.+|...|.+++|++.+
T Consensus 418 ----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~----~~~~~~~~v~~~~~spd~---------- 479 (577)
T 2ymu_A 418 ----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVRGVAFSPDG---------- 479 (577)
T ss_dssp ----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEE----EEECCSSCEEEEEECTTS----------
T ss_pred ----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEE----EEcCCCCCEEEEEEcCCC----------
Confidence 45677899999999999999999999999999999998754333 345799999999998544
Q ss_pred CCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEecccCCCCccchhhhhhhhhhccCCCC
Q 001321 671 HSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPT 750 (1100)
Q Consensus 671 ~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1100)
.+|++++.|+.|.+||. +|+.+..- +....
T Consensus 480 ------------~~las~~~d~~i~iw~~-~~~~~~~~---~~h~~---------------------------------- 509 (577)
T 2ymu_A 480 ------------QTIASASDDKTVKLWNR-NGQLLQTL---TGHSS---------------------------------- 509 (577)
T ss_dssp ------------CEEEEEETTSEEEEEET-TSCEEEEE---ECCSS----------------------------------
T ss_pred ------------CEEEEEeCCCEEEEEcC-CCCEEEEE---eCCCC----------------------------------
Confidence 45999999999999993 44332211 00000
Q ss_pred CCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEeccccee-ec-cccc---ccceeeeeecCCceEEE
Q 001321 751 PDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ-KV-KHKN---RCCWASTIEKDEKVCGL 824 (1100)
Q Consensus 751 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~~-~~-~~~~---~c~~~~~~~~~~~~~~l 824 (1100)
+| ....++. ...+++++++| .||||++..... .. .... .++|+| .+..|
T Consensus 510 ~v----------------~~l~~s~---dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~------dg~~l 564 (577)
T 2ymu_A 510 SV----------------RGVAFSP---DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP------DGQTI 564 (577)
T ss_dssp CE----------------EEEEECT---TSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT------TSSCE
T ss_pred CE----------------EEEEEcC---CCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC------CCCEE
Confidence 11 0011111 15578888877 899999764322 11 1122 456765 45578
Q ss_pred EEEEecCcEEEee
Q 001321 825 LLLFQTGAVQIRS 837 (1100)
Q Consensus 825 ~~~~~~G~i~i~s 837 (1100)
++...||.|+||+
T Consensus 565 ~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 565 ASASSDKTVKLWN 577 (577)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEeCCCEEEEeC
Confidence 8889999999996
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-42 Score=427.13 Aligned_cols=551 Identities=12% Similarity=0.106 Sum_probs=373.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc--ee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LA 111 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~--~l 111 (1100)
.+.+.+++|+|+|++||+++ ++.|+||+.. ........+|..+|++++|+|+|.+|++++.|++|+|||+.+++ +.
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 55788899999999999998 5799999995 45556778999999999999999999999999999999997643 23
Q ss_pred eee-ecCCCeEEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 112 CCL-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 112 ~~~-~~~~~Vt~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
..+ .|.+.|.+++|+|+++++++++.+ +.|++|+ . +... ..+.+|. ..|.+++|+|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~--~~~~---~~l~gh~------------~~v~~v~f~p 157 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--T--GTSN---GNLTGQA------------RAMNSVDFKP 157 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--T--CCBC---BCCCCCS------------SCEEEEEECS
T ss_pred EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--C--CCCc---ceecCCC------------CCceEEEECC
Confidence 333 678999999999999999988764 3555554 3 2222 2255665 8999999999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
. ...+|++++.|++|++||..+++... +.+| ...|.+++|. |+|.+|
T Consensus 158 ~-~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H------------------------------~~~V~~v~fs-pdg~~l 205 (611)
T 1nr0_A 158 S-RPFRIISGSDDNTVAIFEGPPFKFKSTFGEH------------------------------TKFVHSVRYN-PDGSLF 205 (611)
T ss_dssp S-SSCEEEEEETTSCEEEEETTTBEEEEEECCC------------------------------SSCEEEEEEC-TTSSEE
T ss_pred C-CCeEEEEEeCCCeEEEEECCCCeEeeeeccc------------------------------cCceEEEEEC-CCCCEE
Confidence 4 22369999999999999998887654 4455 7889999985 999999
Q ss_pred EEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEE
Q 001321 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltv 345 (1100)
++|+.||+|++||+.+++........ . ........++..+. .++++.+|++++.++ .
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~----~----~~~~~h~~~V~~v~--------~spdg~~l~s~s~D~-------~ 262 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDD----S----LKNVAHSGSVFGLT--------WSPDGTKIASASADK-------T 262 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCT----T----SSSCSSSSCEEEEE--------ECTTSSEEEEEETTS-------E
T ss_pred EEEECCCcEEEEECCCCcEeeeeccc----c----ccccccCCCEEEEE--------ECCCCCEEEEEeCCC-------e
Confidence 99999999999998876322110000 0 00001223455443 456788999998887 6
Q ss_pred EEcCCccccccceeeeeeeecCC--CcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCC
Q 001321 346 LSLEWSSGMENLRCVSRVDITLT--GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCP 423 (1100)
Q Consensus 346 l~l~~~~~~~~~~~~~~~~l~~~--~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 423 (1100)
+.+|.......+ ..+..... .....+.+ . ...++....+|.+.+|+........
T Consensus 263 v~lWd~~~~~~~---~~~~~~~~~~~~~~~~~~--~--------~~~l~s~s~d~~i~~~~~~~~~~~~----------- 318 (611)
T 1nr0_A 263 IKIWNVATLKVE---KTIPVGTRIEDQQLGIIW--T--------KQALVSISANGFINFVNPELGSIDQ----------- 318 (611)
T ss_dssp EEEEETTTTEEE---EEEECCSSGGGCEEEEEE--C--------SSCEEEEETTCCEEEEETTTTEEEE-----------
T ss_pred EEEEeCCCCcee---eeecCCCCccceeEEEEE--c--------CCEEEEEeCCCcEEEEeCCCCCcce-----------
Confidence 777754422111 11111111 11222222 1 1245666667777776632111000
Q ss_pred ccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEec
Q 001321 424 VEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYH 503 (1100)
Q Consensus 424 ~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~ 503 (1100)
...||...+..++++|++++|++|+.
T Consensus 319 ------------------------------------------------------~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 319 ------------------------------------------------------VRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp ------------------------------------------------------EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ------------------------------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 11244455566789999999999999
Q ss_pred CCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcc----------
Q 001321 504 DGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKN---------- 573 (1100)
Q Consensus 504 DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~---------- 573 (1100)
||+|++||+.++.+.. ....+|...|++++|++++ .|++++.|+.+++|+.........
T Consensus 345 D~~v~~Wd~~~~~~~~----------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 413 (611)
T 1nr0_A 345 EGHINSWDISTGISNR----------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQ 413 (611)
T ss_dssp TSCEEEEETTTCCEEE----------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSC
T ss_pred CCcEEEEECCCCceee----------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCC
Confidence 9999999999876541 1125788999999999765 788899999999999876432111
Q ss_pred ---eeeeccCC-------CceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeec
Q 001321 574 ---FLFVLETK-------SEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD 643 (1100)
Q Consensus 574 ---~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~ 643 (1100)
..|.++.. +.+..... + . ...+ .|...|++++|+|+|++||+|+.||+|+|||+.++..... ..
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~~--~-~-~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~-~~ 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYSH--G-K-LTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV-KT 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEET--T-E-EEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE-EE
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEeC--C-c-eeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee-ec
Confidence 00101100 00111110 0 1 1122 3778899999999999999999999999999988754311 12
Q ss_pred CCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCC-CccccCCccccCCCceeEEEE
Q 001321 644 ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS-ENMISSSPWHLKKKVIAISME 722 (1100)
Q Consensus 644 ~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~-g~~l~~~~i~~~~~~~~l~~~ 722 (1100)
.+|...|++++|++++. +|++++.|+.|.+||..+ ++++... .......
T Consensus 488 -~~h~~~v~~v~fspdg~----------------------~las~s~d~~v~~w~~~~~~~~~~~~-~~~~H~~------ 537 (611)
T 1nr0_A 488 -IVHPAEITSVAFSNNGA----------------------FLVATDQSRKVIPYSVANNFELAHTN-SWTFHTA------ 537 (611)
T ss_dssp -EECSSCEEEEEECTTSS----------------------EEEEEETTSCEEEEEGGGTTEESCCC-CCCCCSS------
T ss_pred -cCCCCceEEEEECCCCC----------------------EEEEEcCCCCEEEEEcCCCCceeeee-eeeeccc------
Confidence 46999999999996554 499999999999999665 3332211 0000000
Q ss_pred EecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEeccccee
Q 001321 723 VIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ 801 (1100)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~~ 801 (1100)
+ +....++. .+.++++++.| .||||++....+
T Consensus 538 ----------------------------~----------------V~~v~fsp---dg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 538 ----------------------------K----------------VACVSWSP---DNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp ----------------------------C----------------EEEEEECT---TSSEEEEEETTSCEEEEETTCTTS
T ss_pred ----------------------------c----------------eeEEEECC---CCCEEEEEECCCcEEEEECCCccc
Confidence 0 11112221 15688888877 999999975422
Q ss_pred -----eccc-cc---ccceeeeeecCCceEEEEEEEecCcEEEeecC
Q 001321 802 -----KVKH-KN---RCCWASTIEKDEKVCGLLLLFQTGAVQIRSLP 839 (1100)
Q Consensus 802 -----~~~~-~~---~c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp 839 (1100)
.... .. .++|+| .+. |+....||.|++|++|
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~------d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLN------ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEE------TTE-EEEEETTSCEEEEECC
T ss_pred ccchhhccCcccCeeEEEEcC------CCE-EEEecCCCCEEEEecc
Confidence 1111 11 446766 344 8889999999999986
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.7e-42 Score=427.96 Aligned_cols=475 Identities=12% Similarity=0.118 Sum_probs=334.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC----cEEEEE
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQNQGFLISITNDN----EIQVWS 104 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~---~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~----~I~vWd 104 (1100)
.||.+.|++++|+|++++||+|+.||.|+|||... ........|.++|.+++|+|++.+|++++.++ .|.+||
T Consensus 56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 48999999999999999999999999999999843 22345678999999999999999999998753 566666
Q ss_pred cCCCceeeee-ecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 105 LESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 105 ~~s~~~l~~~-~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
++.....+ .|...|++++|+|++. ++++|+.|++|++|+... ++.. ..+.+|. ..|.++
T Consensus 136 --~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--~~~~---~~l~~H~------------~~V~~v 196 (611)
T 1nr0_A 136 --TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFK---STFGEHT------------KFVHSV 196 (611)
T ss_dssp --TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEE---EEECCCS------------SCEEEE
T ss_pred --CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--CeEe---eeecccc------------CceEEE
Confidence 45544444 7888999999999987 699999999999998653 3333 3366666 899999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
+|+| +|++|++++.|++|++||+.+++....+.... +. ...+...|.+++|. |+|
T Consensus 197 ~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--~~--------------------~~~h~~~V~~v~~s-pdg 251 (611)
T 1nr0_A 197 RYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LK--------------------NVAHSGSVFGLTWS-PDG 251 (611)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SS--------------------SCSSSSCEEEEEEC-TTS
T ss_pred EECC--CCCEEEEEECCCcEEEEECCCCcEeeeecccc--cc--------------------ccccCCCEEEEEEC-CCC
Confidence 9988 78889999999999999999987765541100 00 00117889999985 999
Q ss_pred CEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcce
Q 001321 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ 342 (1100)
.+|++++.|++|++||+.+++... .+... .........+.| ++..+++++.++
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~-----------~~~~~-~~~~~~~~~~~~----------~~~~l~s~s~d~----- 304 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEK-----------TIPVG-TRIEDQQLGIIW----------TKQALVSISANG----- 304 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-----------EEECC-SSGGGCEEEEEE----------CSSCEEEEETTC-----
T ss_pred CEEEEEeCCCeEEEEeCCCCceee-----------eecCC-CCccceeEEEEE----------cCCEEEEEeCCC-----
Confidence 999999999999999998763221 11111 001112222322 344566666665
Q ss_pred EEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCC
Q 001321 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1100)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1100)
.+.+|....... ..........+.++.+.|++. .++....+|.+.+|+.........
T Consensus 305 --~i~~~~~~~~~~----~~~~~gh~~~v~~l~~spdg~--------~l~s~s~D~~v~~Wd~~~~~~~~~--------- 361 (611)
T 1nr0_A 305 --FINFVNPELGSI----DQVRYGHNKAITALSSSADGK--------TLFSADAEGHINSWDISTGISNRV--------- 361 (611)
T ss_dssp --CEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTCCEEEC---------
T ss_pred --cEEEEeCCCCCc----ceEEcCCCCCEEEEEEeCCCC--------EEEEEeCCCcEEEEECCCCceeee---------
Confidence 344443322111 112223455788999988743 577778889999998443221110
Q ss_pred CccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEe
Q 001321 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1100)
Q Consensus 423 ~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~ 502 (1100)
...+|...+..+++++++ .+++++
T Consensus 362 -------------------------------------------------------~~~~h~~~v~~~~~s~~~-~l~s~s 385 (611)
T 1nr0_A 362 -------------------------------------------------------FPDVHATMITGIKTTSKG-DLFTVS 385 (611)
T ss_dssp -------------------------------------------------------SSCSCSSCEEEEEECTTS-CEEEEE
T ss_pred -------------------------------------------------------cccCCcceEEEEEECCCC-cEEEEE
Confidence 001222233334555554 677899
Q ss_pred cCCcEEEeeCCCCceeEE----eeecccee-------------------------eeeecCCCCCeeEEEEeeCCCeEEE
Q 001321 503 HDGSVRIWDATYPVFKLI----CALDAEVQ-------------------------GIEVAGSRAPVSTLSFCFINSSLAV 553 (1100)
Q Consensus 503 ~DGtIriWd~~~~~l~~~----~~l~~~~~-------------------------~~~l~~h~~~Vt~lafspd~~~Las 553 (1100)
.|++|++|++....+... ..+..... +.....|...+++++|+||+++||+
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence 999999999775432100 00000000 0001125678999999999999999
Q ss_pred EecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 554 GNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 554 g~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
|+.||.|+||++..... ..... .+|.+.|++|+|||+|++||+|+.|++|++||+.
T Consensus 466 gs~D~~v~lwd~~~~~~-----------------------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGASV-----------------------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EETTSEEEEEEEETTEE-----------------------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred eCCCCeEEEEEccCCce-----------------------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcC
Confidence 99999999999976411 01223 6899999999999999999999999999999999
Q ss_pred C-ceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCc
Q 001321 634 L-LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1100)
Q Consensus 634 ~-~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~ 703 (1100)
+ ++++ ......+|...|.+++|++++. +|++|+.|++|++||..++.
T Consensus 522 ~~~~~~-~~~~~~~H~~~V~~v~fspdg~----------------------~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 522 NNFELA-HTNSWTFHTAKVACVSWSPDNV----------------------RLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp GTTEES-CCCCCCCCSSCEEEEEECTTSS----------------------EEEEEETTSCEEEEETTCTT
T ss_pred CCCcee-eeeeeeecccceeEEEECCCCC----------------------EEEEEECCCcEEEEECCCcc
Confidence 7 5543 1112234999999999996554 49999999999999966543
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.6e-42 Score=458.73 Aligned_cols=614 Identities=10% Similarity=0.082 Sum_probs=419.6
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
....||.+.|++++|+|++++||+|+.||.|+||+.... .+....+|..+|.+++|+|++.+|++++.|++|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 344589999999999999999999999999999999654 4456678999999999999999999999999999999999
Q ss_pred Cceeeee-ecCCCeEEEEEec--CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 108 RSLACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 108 ~~~l~~~-~~~~~Vt~~~~s~--~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
++.+..+ .|...|++++|+| +..++++|+.||.|++|+++. +... ..+.+|. ..|.+++|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~---~~~~~h~------------~~v~~~~~ 751 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECR---NTMFGHT------------NSVNHCRF 751 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--SSEE---EEECCCS------------SCEEEEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--cchh---heecCCC------------CCEEEEEE
Confidence 9988877 6788999999999 456899999999999999875 3333 3366665 89999999
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
+| ++.++++++.||.|++||+.++............... .. ........+.+++|. |+|..
T Consensus 752 sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---------~~-------~~~~~~~~v~~~~~s-~dg~~ 812 (1249)
T 3sfz_A 752 SP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSS---------ED-------PPEDVEVIVKCCSWS-ADGDK 812 (1249)
T ss_dssp CS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------------------------CCCCCBCCCCBC-TTSSE
T ss_pred ec--CCCEEEEEECCCeEEEEeCCCCcccceeccccccccc---------CC-------ccccccceEEEEEEC-CCCCE
Confidence 88 6888999999999999999998776544321111100 00 000114568888985 99999
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEE
Q 001321 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~lt 344 (1100)
+++++ +|.+.+||..++.... .+.. ....++..+ +.++++.++++++.++
T Consensus 813 l~~~~-~~~v~~~d~~~~~~~~-----------~~~~---~~~~~v~~~--------~~sp~~~~l~~~~~dg------- 862 (1249)
T 3sfz_A 813 IIVAA-KNKVLLFDIHTSGLLA-----------EIHT---GHHSTIQYC--------DFSPYDHLAVIALSQY------- 862 (1249)
T ss_dssp EEEEE-TTEEEEEETTTCCEEE-----------EEEC---SSSSCCCEE--------EECSSTTEEEEECSSS-------
T ss_pred EEEEc-CCcEEEEEecCCCcee-----------EEcC---CCCCceEEE--------EEcCCCCEEEEEeCCC-------
Confidence 98887 7899999998763221 1110 011122222 2556788888888776
Q ss_pred EEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCc
Q 001321 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1100)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1100)
.+.+|.......+ .........+..+.+.|++. .++..+.+|.+.+|+.......... ..
T Consensus 863 ~v~vwd~~~~~~~----~~~~~h~~~v~~v~~spdg~--------~l~s~s~dg~v~vw~~~~~~~~~~~--------~~ 922 (1249)
T 3sfz_A 863 CVELWNIDSRLKV----ADCRGHLSWVHGVMFSPDGS--------SFLTASDDQTIRVWETKKVCKNSAI--------VL 922 (1249)
T ss_dssp CEEEEETTTTEEE----EEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEEHHHHHSCCSS--------SE
T ss_pred eEEEEEcCCCcee----eecCCCccceEEEEECCCCC--------EEEEEeCCCeEEEEEccccceeeee--------cc
Confidence 4445443321111 11123445788888888643 5777788899999984321110000 00
Q ss_pred cCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecC
Q 001321 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1100)
Q Consensus 425 ~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~D 504 (1100)
.......+........... .... ...+. + .... ........+.+++++|+++++++|+.|
T Consensus 923 ~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~---------~-----~~~~--~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVD-NIRG---LQLIA---------G-----KTGQ--IDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEE-SSSS---EEEEE---------E-----SSCC--EEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred cceeeEEEcCCCcEEEEec-CCcc---eEEEe---------c-----Ccce--EEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 0000000000000000000 0000 00000 0 0000 000012234566899999999999999
Q ss_pred CcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCce
Q 001321 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1100)
Q Consensus 505 GtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1100)
|.|++||+..+... ..+.+|...|++++|+|++++|++++.||.|++|++.+.
T Consensus 983 g~i~i~d~~~~~~~-----------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~---------------- 1035 (1249)
T 3sfz_A 983 GAIKIIELPNNRVF-----------SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG---------------- 1035 (1249)
T ss_dssp SCCEEEETTTTSCE-----------EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT----------------
T ss_pred CCEEEEEcCCCcee-----------eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC----------------
Confidence 99999999887754 346789999999999999999999999999999999875
Q ss_pred eeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCcc
Q 001321 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1100)
Q Consensus 585 ~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~ 664 (1100)
....+..|...|++++|+|++ .+++|+.||+|++||+.+++.+. .+.+|...|++++|++.+..
T Consensus 1036 ----------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~-- 1099 (1249)
T 3sfz_A 1036 ----------DYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIER---DFTCHQGTVLSCAISSDATK-- 1099 (1249)
T ss_dssp ----------EEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCE---EEECCSSCCCCEEECSSSSS--
T ss_pred ----------ceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeE---EEcccCCcEEEEEECCCCCE--
Confidence 123456899999999999987 57889999999999999988763 33469999999999966654
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCccccCCCceeEEEEEecccCCCCccchhhhhhhhhh
Q 001321 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSPWHLKKKVIAISMEVIEPVCGFPIEKQAEQSAEENA 744 (1100)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1100)
|++++.||.|.+||..++..+.... ...+....
T Consensus 1100 --------------------l~s~s~d~~v~iwd~~~~~~~~~l~---~h~~~v~~------------------------ 1132 (1249)
T 3sfz_A 1100 --------------------FSSTSADKTAKIWSFDLLSPLHELK---GHNGCVRC------------------------ 1132 (1249)
T ss_dssp --------------------CEEECCSSCCCEECSSSSSCSBCCC---CCSSCEEE------------------------
T ss_pred --------------------EEEEcCCCcEEEEECCCcceeeeec---cCCCcEEE------------------------
Confidence 9999999999999977766443321 00110001
Q ss_pred ccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEeccccee--ec----------ccc---cc
Q 001321 745 AKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSVIQ--KV----------KHK---NR 808 (1100)
Q Consensus 745 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~~~--~~----------~~~---~~ 808 (1100)
..++. ...+++++++| .|+||++.+... .. ... ..
T Consensus 1133 --------------------------~~~s~---dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1133 --------------------------SAFSL---DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp --------------------------EEECS---SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred --------------------------EEECC---CCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 11111 15678888876 899999986543 11 111 14
Q ss_pred cceeeeeecCCceEEEEEEEecCcEEEeecCChhhhhhccccceeeeeeccccccceeec-CCcEEEEcc-eeEEEE
Q 001321 809 CCWASTIEKDEKVCGLLLLFQTGAVQIRSLPDLELVMESSLMSILRWNFKANMDKTISAD-NGQITLANG-SEVAFV 883 (1100)
Q Consensus 809 c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~l~~~~~~~~~~~l~~~~~~~~~~~~~~s-~gq~~l~~g-~e~~~~ 883 (1100)
++|+| .+..|++ .+|.|++|++.+-+.+... ......+.+++|| ||+.+++.+ ++.+.+
T Consensus 1184 l~fs~------dg~~l~s--~~g~v~vwd~~~g~~~~~~--------~~~~~~i~~~~~s~dg~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A 1184 VCFSP------DSKTLVS--AGGYLKWWNVATGDSSQTF--------YTNGTNLKKIHVSPDFRTYVTVDNLGILYI 1244 (1249)
T ss_dssp EEECT------TSSCEEE--ESSSEEEBCSSSCBCCCCC--------CCSSCCCCCCEECSSSCCEEEECTTCCEEE
T ss_pred EEECC------CCCEEEE--CCCeEEEEECCCCceeeee--------eccCCcccEEEECCCCCEEEEecCCcEEEE
Confidence 56665 3444544 3599999999886543332 1234457889999 999888887 665554
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.6e-38 Score=389.20 Aligned_cols=550 Identities=11% Similarity=0.095 Sum_probs=387.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-----eEEEeCCCCCC-EEEEEEEe--CCCEEEEEECCCcEEEE
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLP-YKNLEFLQ--NQGFLISITNDNEIQVW 103 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-----~~~~~~~h~~~-V~~l~fs~--d~~~Lls~s~d~~I~vW 103 (1100)
.++.+.|++++|+|++++||+|+ ++.|+||+.+.. ......+|..+ |.+++|+| ++.+|++++.|++|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 36788999999999999999999 899999999654 56677889999 99999999 99999999999999999
Q ss_pred EcCCC--------ceeeee-ecCCCeEEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 104 SLESR--------SLACCL-KWESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 104 d~~s~--------~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
|+.++ +.+..+ .+...|++++|+|+++++++++.+ +.|++|+ . +... ..+.+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~--~~~~---~~~~~~~------ 160 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S--GNSL---GEVSGHS------ 160 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T--CCEE---EECCSCS------
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C--CCcc---eeeecCC------
Confidence 99754 455555 578899999999999999999987 6666665 2 2333 2355555
Q ss_pred CCCCCCCCeEEEEeccCCCCC-EEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~-~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~ 248 (1100)
..|.++.|+| ++. ++++++.|+.|++||+.+++....+ +|
T Consensus 161 ------~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~------------------------------ 202 (615)
T 1pgu_A 161 ------QRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH------------------------------ 202 (615)
T ss_dssp ------SCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSS------------------------------
T ss_pred ------ccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeeccc------------------------------
Confidence 8899999988 454 6999999999999999998876544 34
Q ss_pred CC---ceEEEEEecCC-CCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCC
Q 001321 249 EK---EISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSN 324 (1100)
Q Consensus 249 ~~---~V~sl~w~spd-g~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~ 324 (1100)
.. .|++++|. |+ +.+|++++.||.|++||+.+++... .+.........++..+.| .
T Consensus 203 ~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~~~~~v~~~~~--------~ 262 (615)
T 1pgu_A 203 HKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGKSGEFLK-----------YIEDDQEPVQGGIFALSW--------L 262 (615)
T ss_dssp SCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETTTCCEEE-----------ECCBTTBCCCSCEEEEEE--------S
T ss_pred CCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCCEeE-----------EecccccccCCceEEEEE--------c
Confidence 45 89999986 99 9999999999999999998763221 110000012334555533 3
Q ss_pred CCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeec---CCCcceeEEEccCCCCCCCCCcceEEEEecCCeee
Q 001321 325 IDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDIT---LTGSFADMILLSSAGATVGNHKADLFVLTSPGQLH 401 (1100)
Q Consensus 325 ~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~---~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~ 401 (1100)
++.++++++.++ .+.+|.......+ ..+... ....+..+.+. . ...+++.+.+|.+.
T Consensus 263 -~~~~l~~~~~d~-------~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~--------~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 263 -DSQKFATVGADA-------TIRVWDVTTSKCV---QKWTLDKQQLGNQQVGVVAT-G--------NGRIISLSLDGTLN 322 (615)
T ss_dssp -SSSEEEEEETTS-------EEEEEETTTTEEE---EEEECCTTCGGGCEEEEEEE-E--------TTEEEEEETTSCEE
T ss_pred -CCCEEEEEcCCC-------cEEEEECCCCcEE---EEEcCCCCcccCceeEEEeC-C--------CCeEEEEECCCCEE
Confidence 677888887775 5555543321111 112222 11234444442 2 23577778889999
Q ss_pred EeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCC
Q 001321 402 FYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGG 481 (1100)
Q Consensus 402 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG 481 (1100)
+|+......+... .+
T Consensus 323 ~~d~~~~~~~~~~-----------------------------------------------------------------~~ 337 (615)
T 1pgu_A 323 FYELGHDEVLKTI-----------------------------------------------------------------SG 337 (615)
T ss_dssp EEETTEEEEEEEE-----------------------------------------------------------------CC
T ss_pred EEECCCCcEEEEE-----------------------------------------------------------------eC
Confidence 9885432221111 12
Q ss_pred cccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEE
Q 001321 482 VPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVY 561 (1100)
Q Consensus 482 ~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~ 561 (1100)
+...+..+++ |+ +++|+.||.|++||+. . +. .+|...|++++| +++..|++++.||.|+
T Consensus 338 ~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~--~-------------~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~ 396 (615)
T 1pgu_A 338 HNKGITALTV-NP---LISGSYDGRIMEWSSS--S-------------MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLK 396 (615)
T ss_dssp CSSCEEEEET-TT---TEEEETTSCEEETTTT--E-------------EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEE
T ss_pred CCCCEEEEEe-cC---cEEECCCCeEEEEEch--h-------------hc-CcccCceEEEEE-CCCcEEEEEeCCCCEE
Confidence 2233344567 66 9999999999999998 1 23 678899999999 7788999999999999
Q ss_pred EEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEe
Q 001321 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1100)
Q Consensus 562 lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~ 641 (1100)
+|++..... ...+.+++|+|++.++++| .++.+.+|++..++.+...
T Consensus 397 ~~~~~~~~~--------------------------------~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (615)
T 1pgu_A 397 VNGITKHEF--------------------------------GSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV 443 (615)
T ss_dssp ETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred EEEcccCcc--------------------------------cCCceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeec
Confidence 999876411 1167899999999888887 7788999999888877433
Q ss_pred ecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEec-ceeEEEEeCCCCccccCCccccCCCceeEE
Q 001321 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK-DAKISIVGGSSENMISSSPWHLKKKVIAIS 720 (1100)
Q Consensus 642 ~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~-dg~v~v~d~~~g~~l~~~~i~~~~~~~~l~ 720 (1100)
. |...|.+++|+ + .+|++++. ||.|.+||..++.+.. . .......
T Consensus 444 ~----~~~~~~~~~~~--~----------------------~~l~~~~~~d~~i~~~~~~~~~~~~-~-~~~~~~~---- 489 (615)
T 1pgu_A 444 R----LNSPGSAVSLS--Q----------------------NYVAVGLEEGNTIQVFKLSDLEVSF-D-LKTPLRA---- 489 (615)
T ss_dssp E----CSSCEEEEEEC--S----------------------SEEEEEETTTSCEEEEETTEEEEEE-E-CSSCCSS----
T ss_pred c----cCCCceEEEEc--C----------------------CEEEEeecCCCeEEEEECCCccccc-c-ccCCccC----
Confidence 2 78899999998 3 34899999 9999999966543321 0 0000000
Q ss_pred EEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecC-eeEEEecccc
Q 001321 721 MEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCED-SVRLYSRKSV 799 (1100)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~-~vrl~sl~~~ 799 (1100)
+| ....++ +...+++++++| .|++|++...
T Consensus 490 ------------------------------~v----------------~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 490 ------------------------------KP----------------SYISIS---PSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp ------------------------------CE----------------EEEEEC---TTSSEEEEEETTSCEEEEETTTT
T ss_pred ------------------------------ce----------------EEEEEC---CCCCEEEEcCCCCeEEEeeCCCC
Confidence 01 001111 115678888776 9999999877
Q ss_pred ee--ecc--ccc---ccceeee----eecCCceEEEEEEEecCcEEEeecCChh-hhhhccccceeeeeeccccccceee
Q 001321 800 IQ--KVK--HKN---RCCWAST----IEKDEKVCGLLLLFQTGAVQIRSLPDLE-LVMESSLMSILRWNFKANMDKTISA 867 (1100)
Q Consensus 800 ~~--~~~--~~~---~c~~~~~----~~~~~~~~~l~~~~~~G~i~i~slp~l~-~~~~~~~~~~l~~~~~~~~~~~~~~ 867 (1100)
.. ... ... .++|+|. ...+..+..|+++..||.|+||++.+.. .+.. +..+...+..++|
T Consensus 521 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~~h~~~v~~l~~ 592 (615)
T 1pgu_A 521 EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--------LNAHKDGVNNLLW 592 (615)
T ss_dssp EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE--------TTSSTTCEEEEEE
T ss_pred cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh--------hhcCccceEEEEE
Confidence 55 111 111 3466541 0011167789999999999999998853 2221 2223556899999
Q ss_pred c-CCcEEEEcc-eeEEEEE
Q 001321 868 D-NGQITLANG-SEVAFVN 884 (1100)
Q Consensus 868 s-~gq~~l~~g-~e~~~~s 884 (1100)
+ ||+ +++.| ++.+.|-
T Consensus 593 s~~~~-l~s~~~d~~v~iw 610 (615)
T 1pgu_A 593 ETPST-LVSSGADACIKRW 610 (615)
T ss_dssp EETTE-EEEEETTSCEEEE
T ss_pred cCCCC-eEEecCCceEEEE
Confidence 9 999 77777 6666553
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-39 Score=435.01 Aligned_cols=550 Identities=11% Similarity=0.100 Sum_probs=383.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEEEEcCCC
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
.||.+.|.+++|+|++++||+|+.||.|+||+....+ +....+|..+|.+++|+| ++.++++++.|+.|++||+.++
T Consensus 654 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 733 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS
T ss_pred ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc
Confidence 4789999999999999999999999999999996544 445678999999999999 5568999999999999999999
Q ss_pred ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+.+..+ .|.+.|++++|+|+++++++|+.||.|++|++... ..... +...... ......+......|.+++|+|
T Consensus 734 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~--~~~~~-~~~~~~~-~~~~~~~~~~~~~v~~~~~s~- 808 (1249)
T 3sfz_A 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA--NERKS-INVKRFF-LSSEDPPEDVEVIVKCCSWSA- 808 (1249)
T ss_dssp SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT--EEEEE-EECCCCC---------CCCCCBCCCCBCT-
T ss_pred chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCC--cccce-ecccccc-cccCCccccccceEEEEEECC-
Confidence 888776 78899999999999999999999999999998753 22211 1111100 000011112235789999988
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEe--cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL 265 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l 265 (1100)
+|..+++++ ++.+.+||+.++...... +| ...|.+++|. |++.++
T Consensus 809 -dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~------------------------------~~~v~~~~~s-p~~~~l 855 (1249)
T 3sfz_A 809 -DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGH------------------------------HSTIQYCDFS-PYDHLA 855 (1249)
T ss_dssp -TSSEEEEEE-TTEEEEEETTTCCEEEEEECSS------------------------------SSCCCEEEEC-SSTTEE
T ss_pred -CCCEEEEEc-CCcEEEEEecCCCceeEEcCCC------------------------------CCceEEEEEc-CCCCEE
Confidence 788666665 788999999998765543 34 7789999985 999999
Q ss_pred EEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEE
Q 001321 266 AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTV 345 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltv 345 (1100)
++++.||.|++||+.++... ..+. ....++..+. .++++.++++++.++ .
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~-----------~~~~----~h~~~v~~v~--------~spdg~~l~s~s~dg-------~ 905 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKV-----------ADCR----GHLSWVHGVM--------FSPDGSSFLTASDDQ-------T 905 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEE-----------EEEC----CCSSCEEEEE--------ECTTSSEEEEEETTS-------C
T ss_pred EEEeCCCeEEEEEcCCCcee-----------eecC----CCccceEEEE--------ECCCCCEEEEEeCCC-------e
Confidence 99999999999999865211 1111 1223344443 455777888888776 4
Q ss_pred EEcCCccccc---cceee------------------------------eeeeecCCCcceeEEEccCCCCCCCCCcceEE
Q 001321 346 LSLEWSSGME---NLRCV------------------------------SRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1100)
Q Consensus 346 l~l~~~~~~~---~~~~~------------------------------~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~ 392 (1100)
+.+|...... ..... ..........+..+++.|+. ..++
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g--------~~l~ 977 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL--------EYVA 977 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS--------SEEE
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC--------CEEE
Confidence 4444321100 00000 00111112233344444432 2344
Q ss_pred EEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccC
Q 001321 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1100)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1100)
+...+|.+.+|+.......
T Consensus 978 ~g~~~g~i~i~d~~~~~~~------------------------------------------------------------- 996 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVF------------------------------------------------------------- 996 (1249)
T ss_dssp EEETTSCCEEEETTTTSCE-------------------------------------------------------------
T ss_pred EEcCCCCEEEEEcCCCcee-------------------------------------------------------------
Confidence 4555555555552111000
Q ss_pred cccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEE
Q 001321 473 HIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLA 552 (1100)
Q Consensus 473 ~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~La 552 (1100)
....+|...+..++++++++++++++.||+|++||+.++.+. ....|...|++++|+|++ .++
T Consensus 997 ----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~-~l~ 1059 (1249)
T 3sfz_A 997 ----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV------------FLQAHQETVKDFRLLQDS-RLL 1059 (1249)
T ss_dssp ----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE------------CCBCCSSCEEEEEECSSS-EEE
T ss_pred ----eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE------------EEecCCCcEEEEEEcCCC-cEE
Confidence 011234445566789999999999999999999999987643 245788999999999965 577
Q ss_pred EEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEec
Q 001321 553 VGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 553 sg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
+++.||.|++|++.+.. +...+.+|.++|++++|+|++++|++|+.||+|++||+
T Consensus 1060 ~~~~dg~v~vwd~~~~~-------------------------~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~ 1114 (1249)
T 3sfz_A 1060 SWSFDGTVKVWNVITGR-------------------------IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114 (1249)
T ss_dssp EEESSSEEEEEETTTTC-------------------------CCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECS
T ss_pred EEECCCcEEEEECCCCc-------------------------eeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 89999999999998752 34567889999999999999999999999999999999
Q ss_pred CCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCCc-cc
Q 001321 633 NLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSSP-WH 711 (1100)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~~-i~ 711 (1100)
.++..+ ....+|..+|++++|++++ .+|++|+.||.|.+||..+|..+.... +.
T Consensus 1115 ~~~~~~---~~l~~h~~~v~~~~~s~dg----------------------~~lat~~~dg~i~vwd~~~~~~~~~~~~~~ 1169 (1249)
T 3sfz_A 1115 DLLSPL---HELKGHNGCVRCSAFSLDG----------------------ILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1169 (1249)
T ss_dssp SSSSCS---BCCCCCSSCEEEEEECSSS----------------------SEEEEEETTSCCCEEESSSSCCCCCCCCCC
T ss_pred CCccee---eeeccCCCcEEEEEECCCC----------------------CEEEEEeCCCEEEEEECCCCceEEEecccc
Confidence 988765 4455799999999998654 459999999999999988887665431 10
Q ss_pred cCCCceeEEEEEecccCCCCccchhhhhhhhhhccCCCCCCCCcccccCcccccccccccccCCCCCCCCEEEEEecCee
Q 001321 712 LKKKVIAISMEVIEPVCGFPIEKQAEQSAEENAAKNKPTPDTSSIETKSHETEHLFSSENACSGESSNDALVLLCCEDSV 791 (1100)
Q Consensus 712 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cse~~v 791 (1100)
..... . ...+ +| ....++. ...+++++ .+.+
T Consensus 1170 ~~~~~--------~--------------------~~~~-~v----------------~~l~fs~---dg~~l~s~-~g~v 1200 (1249)
T 3sfz_A 1170 VEEGT--------A--------------------THGG-WV----------------TDVCFSP---DSKTLVSA-GGYL 1200 (1249)
T ss_dssp -----------------------------------CCS-CC----------------CEEEECT---TSSCEEEE-SSSE
T ss_pred ccccc--------c--------------------ccCc-eE----------------EEEEECC---CCCEEEEC-CCeE
Confidence 00000 0 0000 11 1112222 14455554 4899
Q ss_pred EEEeccccee--ecc-cc---cccceeeeeecCCceEEEEEEEecCcEEEeecCC
Q 001321 792 RLYSRKSVIQ--KVK-HK---NRCCWASTIEKDEKVCGLLLLFQTGAVQIRSLPD 840 (1100)
Q Consensus 792 rl~sl~~~~~--~~~-~~---~~c~~~~~~~~~~~~~~l~~~~~~G~i~i~slp~ 840 (1100)
++|++.+... ... .. ..++|+| .+..|+++..+|.|.+|.+++
T Consensus 1201 ~vwd~~~g~~~~~~~~~~~~i~~~~~s~------dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1201 KWWNVATGDSSQTFYTNGTNLKKIHVSP------DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp EEBCSSSCBCCCCCCCSSCCCCCCEECS------SSCCEEEECTTCCEEEECCCC
T ss_pred EEEECCCCceeeeeeccCCcccEEEECC------CCCEEEEecCCcEEEEEeecC
Confidence 9999987654 111 11 1346655 566888899999999999874
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-38 Score=392.49 Aligned_cols=474 Identities=13% Similarity=0.095 Sum_probs=340.7
Q ss_pred ecCCCCC-eEEEEEcC--CCCEEEEEECCCeEEEEeCCC---------ceEEEeCCCCCCEEEEEEEeCCCEEEEEECC-
Q 001321 31 HYGIPAT-ASILAFDH--IQRLLAIATLDGRIKVIGGDG---------IEGLLISPSQLPYKNLEFLQNQGFLISITND- 97 (1100)
Q Consensus 31 ~~G~~~~-v~~la~sp--~~~lLA~gs~dG~I~vw~~~~---------~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d- 97 (1100)
..||... |++++|+| ++++||+|+.||.|+||+... ........|..+|.+++|+|++.+|++++.+
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 138 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 138 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred EecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCC
Confidence 3578999 99999999 999999999999999999942 3334556799999999999999999999987
Q ss_pred ---CcEEEEEcCCCceeeee-ecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 98 ---NEIQVWSLESRSLACCL-KWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 98 ---~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
+.|.+|| .++.+..+ .|...|++++|+|+++ ++++|+.+|.|++|++.. ++.. ..+..|.
T Consensus 139 ~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--~~~~---~~~~~~~-------- 203 (615)
T 1pgu_A 139 DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--FKFS---ASDRTHH-------- 203 (615)
T ss_dssp SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--BEEE---EEECSSS--------
T ss_pred CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--ccee---eeecccC--------
Confidence 5778887 55555544 7788999999999998 899999999999999653 3333 3355554
Q ss_pred CCCCC---CeEEEEeccCCC-CCEEEEEEcCCEEEEEEccCCEEEEEe-----cCCcccccccccCCCCCCCCccccCCC
Q 001321 173 LLSHQ---PVVGVLPHPNSS-GNRVLIAYENALVILWDVSEAQIIFVG-----GGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1100)
Q Consensus 173 ~~~~~---~V~sv~f~P~~~-g~~ll~~~~dg~V~lwdl~~~~~~~~~-----~~~~~~~~~~l~~~~~g~~~~~g~~~~ 243 (1100)
. .|.+++|+| + +.++++++.||.|++||+.+++.+..+ +|
T Consensus 204 ----~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------------- 252 (615)
T 1pgu_A 204 ----KQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV------------------------- 252 (615)
T ss_dssp ----CTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-------------------------
T ss_pred ----CCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-------------------------
Confidence 5 899999988 6 888999999999999999999877665 45
Q ss_pred CCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCC
Q 001321 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRS 323 (1100)
Q Consensus 244 ~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~ 323 (1100)
...|.+++|. ++.+|++++.||.|++||+.+++. +..+..........+..+. .
T Consensus 253 -----~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~--------~ 306 (615)
T 1pgu_A 253 -----QGGIFALSWL--DSQKFATVGADATIRVWDVTTSKC-----------VQKWTLDKQQLGNQQVGVV--------A 306 (615)
T ss_dssp -----CSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEE-----------EEEEECCTTCGGGCEEEEE--------E
T ss_pred -----CCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcE-----------EEEEcCCCCcccCceeEEE--------e
Confidence 7889999984 899999999999999999986632 1122211111122333332 2
Q ss_pred CCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeee-cCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeE
Q 001321 324 NIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI-TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHF 402 (1100)
Q Consensus 324 ~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l-~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~ 402 (1100)
+ ++.++++++.++ .+.+|.......+ ..+ .....+..+.+ |+ ++....+|.+.+
T Consensus 307 ~-~~~~l~~~~~~g-------~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~-~~-----------l~~~~~dg~i~~ 361 (615)
T 1pgu_A 307 T-GNGRIISLSLDG-------TLNFYELGHDEVL-----KTISGHNKGITALTV-NP-----------LISGSYDGRIME 361 (615)
T ss_dssp E-ETTEEEEEETTS-------CEEEEETTEEEEE-----EEECCCSSCEEEEET-TT-----------TEEEETTSCEEE
T ss_pred C-CCCeEEEEECCC-------CEEEEECCCCcEE-----EEEeCCCCCEEEEEe-cC-----------cEEECCCCeEEE
Confidence 2 456777777665 3344433221111 122 23346666666 43 667788899999
Q ss_pred eecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCC-
Q 001321 403 YDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGG- 481 (1100)
Q Consensus 403 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG- 481 (1100)
|+...+ . ..+...+++..+ . +.. .+. ..... ..-..|.+..+
T Consensus 362 w~~~~~---~------------------~~~~~~v~~~~~-~-~~~-~l~--------~~~~d-----~~i~~~~~~~~~ 404 (615)
T 1pgu_A 362 WSSSSM---H------------------QDHSNLIVSLDN-S-KAQ-EYS--------SISWD-----DTLKVNGITKHE 404 (615)
T ss_dssp TTTTEE---E------------------CCCCSCEEEEEC-C-STT-CCE--------EEETT-----TEEEETTEEEEE
T ss_pred EEchhh---c------------------CcccCceEEEEE-C-CCc-EEE--------EEeCC-----CCEEEEEcccCc
Confidence 886511 0 124455665555 1 111 000 00000 11122222111
Q ss_pred ----------------------------------------cccccCccccCCCCcEEEEEec-CCcEEEeeCCCCceeEE
Q 001321 482 ----------------------------------------VPSPVPITKCHSVDRVYLAGYH-DGSVRIWDATYPVFKLI 520 (1100)
Q Consensus 482 ----------------------------------------~~~~~~~~~~s~~~~~l~Tg~~-DGtIriWd~~~~~l~~~ 520 (1100)
+...+.+++++ ++++++|+. ||.|++||+..+.+..
T Consensus 405 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~- 481 (615)
T 1pgu_A 405 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF- 481 (615)
T ss_dssp CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE-
T ss_pred ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc-
Confidence 11122233344 678888888 9999999988765321
Q ss_pred eeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEe
Q 001321 521 CALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFS 600 (1100)
Q Consensus 521 ~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 600 (1100)
..+.+|...|++++|+|++++|++|+.||.|++|++... .++..+.
T Consensus 482 ---------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-------------------------~~~~~~~ 527 (615)
T 1pgu_A 482 ---------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-------------------------EVKTSRW 527 (615)
T ss_dssp ---------ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------------EEEECCS
T ss_pred ---------cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-------------------------cceeEee
Confidence 235678899999999999999999999999999999875 1344455
Q ss_pred e-cCcCeEEEEEcC----------CCCEEEEEeCCceEEEEecCCc-eEEEEeecCCCCCCCeEEEEEeecccCccccCC
Q 001321 601 L-VNSPVRALQFTS----------SGAKLAVGFECGRVAVLDMNLL-SVLFFTDDISGSSSPIISMTWTEFKNTHSLAKN 668 (1100)
Q Consensus 601 ~-h~~~VtsLafSp----------~g~~LavGs~dG~V~vwD~~~~-~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~ 668 (1100)
+ |..+|++++|+| ++++||+|+.||+|+|||+.++ ..+ ..+.+|...|++++|++.
T Consensus 528 ~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~~l~~s~~--------- 595 (615)
T 1pgu_A 528 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII---KALNAHKDGVNNLLWETP--------- 595 (615)
T ss_dssp CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE---EETTSSTTCEEEEEEEET---------
T ss_pred cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceec---hhhhcCccceEEEEEcCC---------
Confidence 6 999999999999 9999999999999999999987 444 345679999999999953
Q ss_pred CCCCCCCCCCCCCceEEEEEecceeEEEEeCCC
Q 001321 669 PNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1100)
Q Consensus 669 ~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~ 701 (1100)
.. |++++.||.|.+|+..+
T Consensus 596 -------------~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 -------------ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -------------TE-EEEEETTSCEEEEEEC-
T ss_pred -------------CC-eEEecCCceEEEEeeec
Confidence 35 99999999999999544
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-36 Score=382.64 Aligned_cols=568 Identities=11% Similarity=0.055 Sum_probs=316.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
..+++...|.+++|+| +++||+|+.||.|+|||....+.+....|...|++++|+|++.+|++++.|++|++||+.+++
T Consensus 53 ~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 53 IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 3456788999999999 889999999999999999776666555688899999999999999999999999999999987
Q ss_pred eeee------------eecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc-cc-----C
Q 001321 110 LACC------------LKWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE-KA-----G 170 (1100)
Q Consensus 110 ~l~~------------~~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~-~~-----~ 170 (1100)
+... ..|.+.|++++|+|+ ..++++|+.+|.| +|++.. ++... .+..+.... .. .
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~--~~~~~---~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE--NEIKQ---SFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT--TEEEE---EECCCBCTTCCCSTTCCC
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC--CceEE---EEecccCCcCCCcccccc
Confidence 6411 246689999999996 4789999999999 999875 33332 133221000 00 0
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
....+...|.+++|+| +|.+|++++.||.|++||+.+++.+......+.... + + ......+ ...+..
T Consensus 206 ~~~~h~~~V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~-~---~---~~~~~~~----~~~~~~ 272 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEIN-V---P---QPDYIRD----SSTNAA 272 (902)
T ss_dssp TTSCBCCCEEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT-S---C---CTTCCCC----CSSCCC
T ss_pred cccccCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccC-C---C---CCcCCCC----CccccC
Confidence 0112236799999988 688999999999999999999887654221000000 0 0 0000000 001145
Q ss_pred ceEEEEEe---cCCC-CEEEEEEcC-----CcEEEEecCCC------------------CCCCCcccCCCCcceeeeccc
Q 001321 251 EISALCWA---SSSG-SILAVGYID-----GDILLWNTSTT------------------ASTKGQQTGSRNNVVKLELSS 303 (1100)
Q Consensus 251 ~V~sl~w~---spdg-~~l~sg~~D-----G~I~lWd~~~~------------------~~~~~~~~~~~~~~~~l~~~~ 303 (1100)
.|.+++|. +|++ ..+++|+.| +.+.+|+.... .............+..+....
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 352 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP 352 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECC
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECC
Confidence 78999985 2443 456777665 37888884210 000000000000000000000
Q ss_pred -----------------cCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEE----EcCCccccccceeeee
Q 001321 304 -----------------AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL----SLEWSSGMENLRCVSR 362 (1100)
Q Consensus 304 -----------------~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl----~l~~~~~~~~~~~~~~ 362 (1100)
......+..+.................+.+... ....+++- .+|....... ....
T Consensus 353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~--~v~~~~~s~~~~~~w~~~~~~~--~~~~ 428 (902)
T 2oaj_A 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP--LATTSMAASVPNKLWLGALSAA--QNKD 428 (902)
T ss_dssp SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT--BEEEEEEEEEEHHHHHHHHHTT--BCCC
T ss_pred CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC--CeeEEEEEEcCHHHHHHHHhcc--cCCC
Confidence 000011121111100000000000000000000 00000000 1111000000 0000
Q ss_pred eeecCC-CcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEE
Q 001321 363 VDITLT-GSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAE 441 (1100)
Q Consensus 363 ~~l~~~-~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~ 441 (1100)
..+..+ ..+..+.+.|+ ...++....+|.+.+||..... + . .+.+-...
T Consensus 429 ~~l~G~~~~v~sv~~spd--------g~~laSgs~DgtVrlWd~~~g~-~---~------------------~~~~~~~~ 478 (902)
T 2oaj_A 429 YLLKGGVRTKRQKLPAEY--------GTAFITGHSNGSVRIYDASHGD-I---Q------------------DNASFEVN 478 (902)
T ss_dssp CSCCCSBCCCCCCCCCSE--------EEEEEEEETTSEEEEEESSCCT-T---T------------------TTBCEEEE
T ss_pred CcccCCcCCCCccccccc--------CcEEEEecCCCcEEEEECCCcc-c---c------------------CCceEEee
Confidence 111111 12222223332 3356667888899998843210 0 0 00000000
Q ss_pred EEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEE-
Q 001321 442 FMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLI- 520 (1100)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~- 520 (1100)
+.+ . +..+|...+.+++|+|++++||+|+.||+|+|||+.++.....
T Consensus 479 -------------l~~---~----------------~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 479 -------------LSR---T----------------LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp -------------HHH---H----------------TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred -------------chh---h----------------cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 000 0 1124445566779999999999999999999999976531000
Q ss_pred ---------ee-----e------------------ccc-eeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecC
Q 001321 521 ---------CA-----L------------------DAE-VQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 521 ---------~~-----l------------------~~~-~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~ 567 (1100)
.. + +.. .....+.+|..+|++|+|+||| +||+|+.||+|+|||+..
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 00 0 000 0013467899999999999999 999999999999999765
Q ss_pred CCCCcceeeeccCCCceeeccCCCcceeEEEEe-ecCcCeEEEEEc-----CCC---CEEEEEeCCceEEEEec---CCc
Q 001321 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFS-LVNSPVRALQFT-----SSG---AKLAVGFECGRVAVLDM---NLL 635 (1100)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~h~~~VtsLafS-----p~g---~~LavGs~dG~V~vwD~---~~~ 635 (1100)
...- +. ..+ ..+. +|.+.|++|+|| ||| ++|++|+.||+|++||+ .++
T Consensus 606 ~~~~-------------~~------~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g 665 (902)
T 2oaj_A 606 PAII-------------YM------ENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665 (902)
T ss_dssp TEEE-------------EE------EEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred CeEE-------------EE------eeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence 4100 00 000 1122 889999999999 885 89999999999999999 665
Q ss_pred eEE--EEeecCCCCCCCeEEEE-EeecccCccccCCCCC-CCCCCCCCCCceEEEEEecceeEEEEeCCCCccccC
Q 001321 636 SVL--FFTDDISGSSSPIISMT-WTEFKNTHSLAKNPNH-SEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISS 707 (1100)
Q Consensus 636 ~~~--~~~~~~~~~~~~V~sl~-fs~~~~~~~~~~~~~~-~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~ 707 (1100)
+.. +..+....|.++|.++. |+........ ..++. ........++..+|+++ +..|++|+..+++.+..
T Consensus 666 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~-a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k 738 (902)
T 2oaj_A 666 KFDVQLMDITNVTSKGPIHKIDAFSKETKSSCL-ATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHK 738 (902)
T ss_dssp CEEEEEEEEEECCSSCCCCEEEEEETTTCCBCB-CBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEE
T ss_pred cEEEEecCceecCCCCceEEEEeEecCCCCccc-CCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceee
Confidence 543 23333234678888887 6511110000 00000 00000011334455554 77899999888766543
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.7e-34 Score=363.73 Aligned_cols=464 Identities=13% Similarity=0.079 Sum_probs=316.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
.||++.|.+++|+|++++||+|+.||.|+||+.... .......|..+|++++|+|++.+|++++.|+.|+|||+.+++.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 478999999999999999999999999999998554 4445668999999999999999999999999999999999988
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+..+ .|.+.|++++|+|+++++++|+.+|.|++|+++... ... ..+.+|. ..|.+++|+|. +
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~---~~~~~~~------------~~v~~~~~~p~-~ 152 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALE---QTFEGHE------------HFVMCVAFNPK-D 152 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEE---EEEECCS------------SCEEEEEEETT-E
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEE---EEEcCCC------------CcEEEEEEEcC-C
Confidence 8777 588999999999999999999999999999987532 222 2245555 88999999884 4
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC--CCCEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS--SGSILA 266 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp--dg~~l~ 266 (1100)
+..+++++.||.|++||+.++...... .+ ....+.+++|. | ++.+++
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~-~~~~~~~l~ 202 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTG-----------------------------QERGVNYVDYY-PLPDKPYMI 202 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECC-----------------------------CTTCCCEEEEC-CSTTCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecC-----------------------------CCCCEEEEEEE-ECCCCCEEE
Confidence 667999999999999999876543322 21 04778899986 8 999999
Q ss_pred EEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEE
Q 001321 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl 346 (1100)
+++.||.|++||..++.. +..+.. ...++..+. ..+++.++++++.++ .+
T Consensus 203 ~~~~dg~i~~~d~~~~~~-----------~~~~~~----~~~~v~~~~--------~~~~~~~l~~~~~dg-------~v 252 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSC-----------VATLEG----HMSNVSFAV--------FHPTLPIIISGSEDG-------TL 252 (814)
T ss_dssp EECTTSEEEEEETTTTEE-----------EEEEEC----CSSCEEEEE--------ECSSSSEEEEEETTS-------CE
T ss_pred EEeCCCEEEEEECCCCcE-----------EEEEcC----CCCCEEEEE--------EcCCCCEEEEEeCCC-------eE
Confidence 999999999999976521 111111 122344443 445677888888775 45
Q ss_pred EcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeecc-CCCCCCCCcc
Q 001321 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ-EKKPSVCPVE 425 (1100)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~-~~~~~~~~~~ 425 (1100)
.+|........ .........+..+.+.|+.. ..+++...++.+..|+........... .+........
T Consensus 253 ~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (814)
T 3mkq_A 253 KIWNSSTYKVE----KTLNVGLERSWCIATHPTGR-------KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGK 321 (814)
T ss_dssp EEEETTTCSEE----EEECCSSSSEEEEEECTTCG-------GGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCT
T ss_pred EEEECCCCcEE----EEeecCCCcEEEEEEccCCC-------ceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcc
Confidence 55543321111 11112334788888887732 234555556666666532211111000 0000000000
Q ss_pred CCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCC
Q 001321 426 FPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDG 505 (1100)
Q Consensus 426 ~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DG 505 (1100)
......+..... . . .| .. ..+... ...-...+++...+..++++|+++++++++ ||
T Consensus 322 -----~~~~~~~~~~~~---~-~-----~~----~~--~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~ 377 (814)
T 3mkq_A 322 -----NAAASDIFTAVI---R-G-----NE----EV--EQDEPL---SLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG 377 (814)
T ss_dssp -----TSCTTCEEEEEC---C-S-----CC----CC--CSSSCB---CCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred -----cccceeeeeeec---c-c-----cc----cc--ccCccc---eeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence 000000000000 0 0 00 00 000000 000001133344456678999999999988 99
Q ss_pred cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCcee
Q 001321 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVH 585 (1100)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~ 585 (1100)
.+++|++...... +.+.|++++|+|++++||+++.+|.|++|+.-
T Consensus 378 ~~~i~~~~~~~~~----------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~------------------- 422 (814)
T 3mkq_A 378 EYVIYTALAWRNK----------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNF------------------- 422 (814)
T ss_dssp EEEEEETTTTEEE----------------EEEECSEEEECTTSSCEEEECTTCCEEEEETT-------------------
T ss_pred EEEEEECcccccc----------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECC-------------------
Confidence 9999997644321 12478899999999999999999999999521
Q ss_pred eccCCCcceeEEEEeecCcCeEEEEEcCCC---CEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccC
Q 001321 586 ALPEGKISLCRAVFSLVNSPVRALQFTSSG---AKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNT 662 (1100)
Q Consensus 586 ~i~~~~~~~~~~~~~~h~~~VtsLafSp~g---~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~ 662 (1100)
.+|...|.+++|+|+| .+|++++.||+|++||+.+++.+... ..|.. .+.|++.+..
T Consensus 423 --------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~---~~~~~---~v~~s~dg~~ 482 (814)
T 3mkq_A 423 --------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRI---DVNAK---DVIWSDNGEL 482 (814)
T ss_dssp --------------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEE---SSCEE---EEEECTTSSE
T ss_pred --------------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEE---ecCCC---EEEEcCCCCE
Confidence 4678889999999998 57899999999999999998877333 22433 8889865543
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-34 Score=334.55 Aligned_cols=316 Identities=15% Similarity=0.236 Sum_probs=241.3
Q ss_pred EEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCC
Q 001321 61 VIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENG 139 (1100)
Q Consensus 61 vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG 139 (1100)
.|.........+.+|..+|++++|+|++.+|++++.|++|+|||+.+++....+ .|.+.|++++|+|++++|++|+.||
T Consensus 93 ~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 93 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 344433444566789999999999999999999999999999999999888777 6888999999999999999999999
Q ss_pred cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecC
Q 001321 140 LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGG 218 (1100)
Q Consensus 140 ~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~ 218 (1100)
+|+||++.. +... ..+.+|. ..|.+++|+| ++.+|++++.|+.|++||+.++..+. +.+|
T Consensus 173 ~i~iwd~~~--~~~~---~~~~~h~------------~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 173 TIKLWDFQG--FECI---RTMHGHD------------HNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp CCCEEETTS--SCEE---ECCCCCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred eEEEEeCCC--Ccee---EEEcCCC------------CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 999999864 3333 2255655 8899999988 68889999999999999999987654 4455
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCccee
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVK 298 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~ 298 (1100)
...|.+++|. |+|.+|++|+.||.|++||+.++... ..
T Consensus 234 ------------------------------~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~~~~-----------~~ 271 (410)
T 1vyh_C 234 ------------------------------REWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECK-----------AE 271 (410)
T ss_dssp ------------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEE-----------EE
T ss_pred ------------------------------CccEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcee-----------eE
Confidence 7789999985 99999999999999999998754110 00
Q ss_pred eeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEcc
Q 001321 299 LELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLS 378 (1100)
Q Consensus 299 l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p 378 (1100)
+. . .. ..+..+.+.|
T Consensus 272 ~~--~--h~-------------------------------------------------------------~~v~~~~~~~ 286 (410)
T 1vyh_C 272 LR--E--HR-------------------------------------------------------------HVVECISWAP 286 (410)
T ss_dssp EC--C--CS-------------------------------------------------------------SCEEEEEECC
T ss_pred ec--C--CC-------------------------------------------------------------ceEEEEEEcC
Confidence 00 0 00 0111222222
Q ss_pred CCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHH
Q 001321 379 SAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEI 458 (1100)
Q Consensus 379 ~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~ 458 (1100)
+.. +. .+
T Consensus 287 ~~~---------------------~~----------------------------------------------------~~ 293 (410)
T 1vyh_C 287 ESS---------------------YS----------------------------------------------------SI 293 (410)
T ss_dssp SCG---------------------GG----------------------------------------------------GG
T ss_pred ccc---------------------cc----------------------------------------------------ch
Confidence 210 00 00
Q ss_pred HhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCC
Q 001321 459 ATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP 538 (1100)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~ 538 (1100)
.. ..+. ........+.++++|+.||+|++||+..+.+. ..+.+|...
T Consensus 294 ~~-----------------~~~~-----~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-----------~~~~~h~~~ 340 (410)
T 1vyh_C 294 SE-----------------ATGS-----ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-----------MTLVGHDNW 340 (410)
T ss_dssp GG-----------------CCSC-----C-------CCEEEEEETTSEEEEEETTTTEEE-----------EEEECCSSC
T ss_pred hh-----------------hccc-----cccccCCCCCEEEEEeCCCeEEEEECCCCceE-----------EEEECCCCc
Confidence 00 0000 00012234669999999999999999988754 446789999
Q ss_pred eeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEE
Q 001321 539 VSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL 618 (1100)
Q Consensus 539 Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~L 618 (1100)
|++++|+|++++|++|+.||.|++|++... .++..+.+|...|++|+|+|++.+|
T Consensus 341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~l~~~~~~~~l 395 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNK-------------------------RCMKTLNAHEHFVTSLDFHKTAPYV 395 (410)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTS-------------------------CCCEEEECCSSCEEEEEECSSSSCE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------ceEEEEcCCCCcEEEEEEcCCCCEE
Confidence 999999999999999999999999998764 2456678999999999999999999
Q ss_pred EEEeCCceEEEEecC
Q 001321 619 AVGFECGRVAVLDMN 633 (1100)
Q Consensus 619 avGs~dG~V~vwD~~ 633 (1100)
|+|+.||+|+|||++
T Consensus 396 ~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 396 VTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEETTSEEEEEC--
T ss_pred EEEeCCCcEEEEeCC
Confidence 999999999999974
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.6e-33 Score=316.65 Aligned_cols=292 Identities=13% Similarity=0.181 Sum_probs=235.5
Q ss_pred eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEE
Q 001321 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~ 146 (1100)
....+.+|.++|.+++|+|++.+|++++.|++|++||+.+++.+..+ .+...|.+++|+|+++++++|+.||.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34566789999999999999999999999999999999999887776 57788999999999999999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccc
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKD 225 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~ 225 (1100)
....+.... ...+.+|. +.|.++.|+| ++. +++++.|+.|++||+.+++.... .+|
T Consensus 127 ~~~~~~~~~-~~~~~~h~------------~~v~~~~~~~--~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h------- 183 (340)
T 1got_B 127 KTREGNVRV-SRELAGHT------------GYLSCCRFLD--DNQ-IVTSSGDTTCALWDIETGQQTTTFTGH------- 183 (340)
T ss_dssp TTCSBSCEE-EEEEECCS------------SCEEEEEEEE--TTE-EEEEETTSCEEEEETTTTEEEEEECCC-------
T ss_pred ccCCCccee-EEEecCCC------------ccEEEEEECC--CCc-EEEEECCCcEEEEECCCCcEEEEEcCC-------
Confidence 764332221 13355555 8899999977 454 99999999999999999977654 445
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
.+.|.+++|. |++.++++|+.||.|++||+.++.. .
T Consensus 184 -----------------------~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~-----------~--------- 219 (340)
T 1got_B 184 -----------------------TGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMC-----------R--------- 219 (340)
T ss_dssp -----------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSE-----------E---------
T ss_pred -----------------------CCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCee-----------E---------
Confidence 7889999986 9999999999999999999864310 0
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
..+ .
T Consensus 220 -----~~~-------------------~---------------------------------------------------- 223 (340)
T 1got_B 220 -----QTF-------------------T---------------------------------------------------- 223 (340)
T ss_dssp -----EEE-------------------C----------------------------------------------------
T ss_pred -----EEE-------------------c----------------------------------------------------
Confidence 000 0
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
T Consensus 224 -------------------------------------------------------------------------------- 223 (340)
T 1got_B 224 -------------------------------------------------------------------------------- 223 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
+|...+..++++|++++|++|+.||+|+|||+..+..... .....+...|++++|+
T Consensus 224 ---------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~---------~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 224 ---------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT---------YSHDNIICGITSVSFS 279 (340)
T ss_dssp ---------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---------ECCTTCCSCEEEEEEC
T ss_pred ---------------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE---------EccCCcccceEEEEEC
Confidence 0000011225678888999999999999999987654311 1122344589999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCc
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG 625 (1100)
|++++|++|+.||.|++|++... .+...+.+|.++|++++|+|+|.+||+|+.||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKA-------------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCEEEEECCCCeEEEEEcccC-------------------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 99999999999999999998764 14567789999999999999999999999999
Q ss_pred eEEEEe
Q 001321 626 RVAVLD 631 (1100)
Q Consensus 626 ~V~vwD 631 (1100)
+|+|||
T Consensus 335 ~i~iWd 340 (340)
T 1got_B 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred cEEecC
Confidence 999997
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-33 Score=326.53 Aligned_cols=204 Identities=16% Similarity=0.274 Sum_probs=175.9
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
....||.+.|++++|+|++++||+|+.||.|+|||....+ .....+|..+|.+++|+|++.+|++++.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 3456999999999999999999999999999999996544 456678999999999999999999999999999999999
Q ss_pred Cceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 108 RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 108 ~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
++.+..+ .|...|++++|+|+++++++|+.||+|++|++.. +... ..+.+|. ..|.++.|+|
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~--~~~~---~~~~~h~------------~~v~~~~~~~ 244 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCV---KTFTGHR------------EWVRMVRPNQ 244 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEE---EEEECCS------------SCEEEEEECT
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEE---EEEeCCC------------ccEEEEEECC
Confidence 9887776 6788999999999999999999999999999865 3333 2355665 7899999987
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC----
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS---- 261 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd---- 261 (1100)
++.++++++.|+.|++||+.+++... +.+| ...|.+++|. |+
T Consensus 245 --~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~~~~~-~~~~~~ 291 (410)
T 1vyh_C 245 --DGTLIASCSNDQTVRVWVVATKECKAELREH------------------------------RHVVECISWA-PESSYS 291 (410)
T ss_dssp --TSSEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-CSCGGG
T ss_pred --CCCEEEEEcCCCeEEEEECCCCceeeEecCC------------------------------CceEEEEEEc-Cccccc
Confidence 78889999999999999999987654 4455 7788899985 75
Q ss_pred ----------------CCEEEEEEcCCcEEEEecCCC
Q 001321 262 ----------------GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 ----------------g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|.+|++|+.||.|++||+.++
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 678999999999999998643
No 15
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=325.99 Aligned_cols=360 Identities=13% Similarity=0.132 Sum_probs=259.6
Q ss_pred eeeeecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeC----CCce------EE-EeCC----------CCCCEEEEEE
Q 001321 27 RIAVHYGIPATASILAFDHIQR-LLAIATLDGRIKVIGG----DGIE------GL-LISP----------SQLPYKNLEF 84 (1100)
Q Consensus 27 ~~~~~~G~~~~v~~la~sp~~~-lLA~gs~dG~I~vw~~----~~~~------~~-~~~~----------h~~~V~~l~f 84 (1100)
.....+++.+.|.+++|+|+++ +||+|+.||.|+||+. ...+ .. .... |..+|.+++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 3445567778999999999999 9999999999999999 6554 22 2222 6779999999
Q ss_pred EeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccc
Q 001321 85 LQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1100)
Q Consensus 85 s~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~ 163 (1100)
+|++.+|++++.|+.|++|| .+++.+..+ .|...|++++|+|+++++++++.+|.|++|++.. +..... +..+
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~---~~~~ 190 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS--GTVMQH---FELK 190 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT--TEEEEE---ECCC
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC--CcEEEE---eecc
Confidence 99999999999999999999 455555554 6889999999999999999999999999999864 343321 3322
Q ss_pred ccccc---cCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccc
Q 001321 164 ALSEK---AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFL 239 (1100)
Q Consensus 164 ~~~~~---~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g 239 (1100)
..... ..........+.++.|+| ++ .+++++.+|.|++||+.+++.... .+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~--------------------- 246 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVD--DD-KFVIPGPKGAIFVYQITEKTPTGKLIGH--------------------- 246 (425)
T ss_dssp ---------------CCCBSCCEEEE--TT-EEEEECGGGCEEEEETTCSSCSEEECCC---------------------
T ss_pred ccCccceeeccccCCcceeeEEEEcC--CC-EEEEEcCCCeEEEEEcCCCceeeeeccC---------------------
Confidence 20000 000011112388999987 44 499999999999999998765433 344
Q ss_pred cCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccc
Q 001321 240 EGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNK 319 (1100)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~ 319 (1100)
...|.+++|. |++.+|++++.||.|++||+.++... . .+
T Consensus 247 ---------~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~--------------~~------ 285 (425)
T 1r5m_A 247 ---------HGPISVLEFN-DTNKLLLSASDDGTLRIWHGGNGNSQ-----------N--------------CF------ 285 (425)
T ss_dssp ---------SSCEEEEEEE-TTTTEEEEEETTSCEEEECSSSBSCS-----------E--------------EE------
T ss_pred ---------CCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCccc-----------e--------------Ee------
Confidence 7789999996 99999999999999999998643100 0 00
Q ss_pred cCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCe
Q 001321 320 ESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQ 399 (1100)
Q Consensus 320 ~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~ 399 (1100)
. +
T Consensus 286 ---~---------~------------------------------------------------------------------ 287 (425)
T 1r5m_A 286 ---Y---------G------------------------------------------------------------------ 287 (425)
T ss_dssp ---C---------C------------------------------------------------------------------
T ss_pred ---c---------C------------------------------------------------------------------
Confidence 0 0
Q ss_pred eeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCccccccc
Q 001321 400 LHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLS 479 (1100)
Q Consensus 400 l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 479 (1100)
+...+
T Consensus 288 ---------------------------------~~~~i------------------------------------------ 292 (425)
T 1r5m_A 288 ---------------------------------HSQSI------------------------------------------ 292 (425)
T ss_dssp ---------------------------------CSSCE------------------------------------------
T ss_pred ---------------------------------CCccE------------------------------------------
Confidence 00000
Q ss_pred CCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCce
Q 001321 480 GGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL 559 (1100)
Q Consensus 480 GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~ 559 (1100)
..+.+++++ ++++++.||.|++||+..+.+. ..+..|..+|++++|+|++++|++++.||.
T Consensus 293 -------~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 293 -------VSASWVGDD-KVISCSMDGSVRLWSLKQNTLL-----------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp -------EEEEEETTT-EEEEEETTSEEEEEETTTTEEE-----------EEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred -------EEEEECCCC-EEEEEeCCCcEEEEECCCCcEe-----------EecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 111355666 8999999999999999887654 345678889999999999999999999999
Q ss_pred EEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCc--CeEEEEEcCCCCEEEEEeCCceEEEEecCC
Q 001321 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS--PVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~--~VtsLafSp~g~~LavGs~dG~V~vwD~~~ 634 (1100)
|++|++.......... ...... +.......++..+..|.. +|++++|+|++++|++|+.||.|++||+++
T Consensus 354 i~i~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 354 VNVYDLKKLNSKSRSL--YGNRDG---ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEEECHHHHC-------------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEEEECCCCccceeee--eccccc---ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 9999997653110000 000000 000111225677788876 999999999999999999999999999874
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=309.79 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=170.1
Q ss_pred cCCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce----EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC
Q 001321 32 YGIPA-TASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 32 ~G~~~-~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~ 106 (1100)
.||+. .|.+++|+|++++||+|+.||.|+||+..... ..+..+|..+|.+++|+|++.+|++++.|++|++||+.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 37877 89999999999999999999999999996543 23446899999999999999999999999999999998
Q ss_pred CCc--eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 107 SRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 107 s~~--~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
++. .+..+ .|...|++++|+|++++|++|+.||+|+||+++....... ...+.+|. ..|.+++
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~h~------------~~v~~~~ 157 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC--VSVLNSHT------------QDVKHVV 157 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE--EEEECCCC------------SCEEEEE
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE--EEEecCcC------------CCeEEEE
Confidence 874 34444 6888999999999999999999999999999976432111 12355555 7899999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEE---EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQII---FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~---~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
|+| ++.+|++++.|+.|++||+.++... ...+| ...|.+++|. |
T Consensus 158 ~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h------------------------------~~~v~~l~~s-p 204 (345)
T 3fm0_A 158 WHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGH------------------------------ESTVWSLAFD-P 204 (345)
T ss_dssp ECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-T
T ss_pred ECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC------------------------------CCceEEEEEC-C
Confidence 998 5777999999999999999988543 34455 7889999985 9
Q ss_pred CCCEEEEEEcCCcEEEEecC
Q 001321 261 SGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~ 280 (1100)
+|.+|++|+.||+|++||..
T Consensus 205 ~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 205 SGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp TSSEEEEEETTSCEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEeccc
Confidence 99999999999999999863
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=312.24 Aligned_cols=205 Identities=14% Similarity=0.225 Sum_probs=173.5
Q ss_pred eeeecCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEeCCCceE---EEeCCCCCCEEEEEEEeCCCEEEEEECCCcE
Q 001321 28 IAVHYGIPATASILAFDHI----QRLLAIATLDGRIKVIGGDGIEG---LLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~----~~lLA~gs~dG~I~vw~~~~~~~---~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I 100 (1100)
.....||.+.|.+++|+|+ +.+||+|+.||.|+||+...... ....+|..+|.+++|++++.++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3344689999999999985 67999999999999999855433 2467899999999999999999999999999
Q ss_pred EEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 101 QVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
++||+.+++.+..+ .+...+.+++|+|+++++++|+.+|.|++|+++.. ... +.+..+. ..|
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~--~~~---~~~~~~~------------~~v 167 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG--KKE---YSLDTRG------------KFI 167 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC--SEE---EEEECSS------------SCE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC--cee---EEecCCC------------ceE
Confidence 99999999888777 56678999999999999999999999999998753 222 3355444 779
Q ss_pred EEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
.+++|+| ++++|++++.||.|++||+.+++.+..+ +| ...|.+++|.
T Consensus 168 ~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h------------------------------~~~v~~l~~s 215 (321)
T 3ow8_A 168 LSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGH------------------------------AMPIRSLTFS 215 (321)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCCCEEEEC
T ss_pred EEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEccc------------------------------CCceeEEEEc
Confidence 9999988 7889999999999999999999876543 44 7789999985
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCC
Q 001321 259 SSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|++.+|++|+.||.|++||+.++
T Consensus 216 -pd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 216 -PDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp -TTSCEEEEECTTSCEEEEETTTC
T ss_pred -CCCCEEEEEcCCCeEEEEECCCc
Confidence 99999999999999999998643
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=310.74 Aligned_cols=286 Identities=15% Similarity=0.227 Sum_probs=232.7
Q ss_pred EeCCCCCCEEEEEEEeC----CCEEEEEECCCcEEEEEcCCCceee--ee-ecCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 001321 71 LISPSQLPYKNLEFLQN----QGFLISITNDNEIQVWSLESRSLAC--CL-KWESNITAFSVISGSHFMYIGDENGLMSV 143 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d----~~~Lls~s~d~~I~vWd~~s~~~l~--~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~I 143 (1100)
...+|..+|.+++|+++ +.+|++++.|++|+|||+..++... .+ .|...|+++++++++.++++|+.||+|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 34689999999999875 5689999999999999998876433 23 67789999999999999999999999999
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCccc
Q 001321 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQ 222 (1100)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~ 222 (1100)
|++.. ++... .+..+. ..+.+++|+| ++++|++++.+|.|++||+.+++.... ..+
T Consensus 107 Wd~~~--~~~~~---~~~~~~------------~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~---- 163 (321)
T 3ow8_A 107 WDLEN--GKQIK---SIDAGP------------VDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTR---- 163 (321)
T ss_dssp EETTT--TEEEE---EEECCT------------TCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECS----
T ss_pred EECCC--CCEEE---EEeCCC------------ccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCC----
Confidence 99764 44432 244443 6788999988 788899999999999999998866443 333
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeecc
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELS 302 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~ 302 (1100)
...|.+++|. |+|++|++|+.||.|++||+.+++. +
T Consensus 164 --------------------------~~~v~~~~~s-pdg~~lasg~~dg~i~iwd~~~~~~-----------~------ 199 (321)
T 3ow8_A 164 --------------------------GKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKL-----------L------ 199 (321)
T ss_dssp --------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE-----------E------
T ss_pred --------------------------CceEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcE-----------E------
Confidence 6679999985 9999999999999999999864410 0
Q ss_pred ccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCC
Q 001321 303 SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA 382 (1100)
Q Consensus 303 ~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~ 382 (1100)
..+ .
T Consensus 200 --------~~~---------------------------------~----------------------------------- 203 (321)
T 3ow8_A 200 --------HTL---------------------------------E----------------------------------- 203 (321)
T ss_dssp --------EEE---------------------------------C-----------------------------------
T ss_pred --------EEE---------------------------------c-----------------------------------
Confidence 000 0
Q ss_pred CCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhc
Q 001321 383 TVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFT 462 (1100)
Q Consensus 383 ~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1100)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEE
Q 001321 463 KLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTL 542 (1100)
Q Consensus 463 ~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~l 542 (1100)
++...+..++++|++++|++|+.||+|+|||+..+.+. ..+.+|...|+++
T Consensus 204 ------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~~ 254 (321)
T 3ow8_A 204 ------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-----------GTLSGHASWVLNV 254 (321)
T ss_dssp ------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-----------EEECCCSSCEEEE
T ss_pred ------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-----------EEEcCCCCceEEE
Confidence 00001123367788889999999999999999887754 4577899999999
Q ss_pred EEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe
Q 001321 543 SFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 543 afspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs 622 (1100)
+|+|++.+|++|+.||.|+||++... .++..+.+|.++|++++|+|++++|++|+
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~-------------------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTR-------------------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTT-------------------------EEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCC-------------------------EEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 99999999999999999999999765 35677889999999999999999999999
Q ss_pred CCceEEEEecC
Q 001321 623 ECGRVAVLDMN 633 (1100)
Q Consensus 623 ~dG~V~vwD~~ 633 (1100)
.||+|+|||..
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999963
No 19
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-32 Score=304.48 Aligned_cols=290 Identities=17% Similarity=0.294 Sum_probs=232.4
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
....+|..+|.+++|+|++.+|++++.|++|++||+.++..+..+ .+...|.+++|+|+++++++|+.||+|++|++..
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 345689999999999999999999999999999999999888777 5778899999999999999999999999999875
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC-EEEE-EecCCccccccc
Q 001321 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIF-VGGGKDLQLKDG 226 (1100)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~-~~~~-~~~~~~~~~~~~ 226 (1100)
++.. ..+.+|. ..|.+++|+| ++.+|++|+.|++|++||+.++ .+.. +.+|
T Consensus 87 --~~~~---~~~~~h~------------~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-------- 139 (304)
T 2ynn_A 87 --GEKV---VDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-------- 139 (304)
T ss_dssp --CCEE---EEEECCS------------SCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCC--------
T ss_pred --CcEE---EEEeCCC------------CcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhccc--------
Confidence 3333 3366666 8899999988 6788999999999999999987 4433 4455
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-CCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
...|.+++|. | ++..|++|+.||+|++||+.... +...
T Consensus 140 ----------------------~~~v~~v~~~-p~~~~~l~sgs~D~~v~iwd~~~~~-----------~~~~------- 178 (304)
T 2ynn_A 140 ----------------------EHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQST-----------PNFT------- 178 (304)
T ss_dssp ----------------------CSCEEEEEEC-TTCTTEEEEEETTSEEEEEETTCSS-----------CSEE-------
T ss_pred ----------------------CCcEEEEEEC-CCCCCEEEEEeCCCeEEEEECCCCC-----------ccce-------
Confidence 7889999986 7 67899999999999999985431 0000
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
+ ..+..
T Consensus 179 -------~------------------~~~~~------------------------------------------------- 184 (304)
T 2ynn_A 179 -------L------------------TTGQE------------------------------------------------- 184 (304)
T ss_dssp -------E------------------ECCCT-------------------------------------------------
T ss_pred -------e------------------ccCCc-------------------------------------------------
Confidence 0 00000
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
..+....+
T Consensus 185 -------------------------------------------------~~v~~~~~----------------------- 192 (304)
T 2ynn_A 185 -------------------------------------------------RGVNYVDY----------------------- 192 (304)
T ss_dssp -------------------------------------------------TCEEEEEE-----------------------
T ss_pred -------------------------------------------------CcEEEEEE-----------------------
Confidence 00000000
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
...+++++|++|+.||+|+|||+..+.+. ..+.+|...|++++|+
T Consensus 193 ------------------------~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-----------~~~~~h~~~v~~~~~~ 237 (304)
T 2ynn_A 193 ------------------------YPLPDKPYMITASDDLTIKIWDYQTKSCV-----------ATLEGHMSNVSFAVFH 237 (304)
T ss_dssp ------------------------CCSTTCCEEEEEETTSEEEEEETTTTEEE-----------EEEECCSSCEEEEEEC
T ss_pred ------------------------EEcCCCCEEEEEcCCCeEEEEeCCCCccc-----------eeeCCCCCCEEEEEEC
Confidence 12245668999999999999999987755 4577899999999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC--EEEEEeC
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA--KLAVGFE 623 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~--~LavGs~ 623 (1100)
|++.+|++|+.||.|+||+..+. .+...+..|...|++++|+|++. ++|+|++
T Consensus 238 p~~~~l~s~s~Dg~i~iWd~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 238 PTLPIIISGSEDGTLKIWNSSTY-------------------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp SSSSEEEEEETTSCEEEEETTTC-------------------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred CCCCEEEEEcCCCeEEEEECCCC-------------------------ceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence 99999999999999999998775 25567788999999999999874 6899998
Q ss_pred CceEEEEecCC
Q 001321 624 CGRVAVLDMNL 634 (1100)
Q Consensus 624 dG~V~vwD~~~ 634 (1100)
|| +.+|++..
T Consensus 293 ~g-~~~~~~~~ 302 (304)
T 2ynn_A 293 NG-FTVLSLGN 302 (304)
T ss_dssp TE-EEEEECC-
T ss_pred Cc-eEEEEecc
Confidence 88 67887764
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-32 Score=309.27 Aligned_cols=320 Identities=11% Similarity=0.125 Sum_probs=258.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
.+.|.+++|+|+++++|++..++.+.+|+... ...+...+|..+|.+++|+|++.+|++++ |+.|++||+.++.....
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 56789999999999999999888888877644 34455568999999999999999999998 99999999988753222
Q ss_pred e------ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 114 L------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 114 ~------~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+ .+...|++++|+|+++++++|+.+|.|++|+++....... ..+..+. ..|.++.|+|
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~------------~~i~~~~~~~- 151 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK---AELTSSA------------PACYALAISP- 151 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---EEEECSS------------SCEEEEEECT-
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---eecccCC------------CceEEEEECC-
Confidence 2 5778999999999999999999999999999876432232 3355544 7899999988
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
++.++++++.+|.|++||+.+++....+ +| ...|.+++|. |++.+++
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~~l~ 199 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH------------------------------TDGASCIDIS-NDGTKLW 199 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEC-TTSSEEE
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecc------------------------------cCceEEEEEC-CCCCEEE
Confidence 6888999999999999999998876544 34 7789999986 9999999
Q ss_pred EEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEE
Q 001321 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl 346 (1100)
+++.||.|++||+.++.. .. .+
T Consensus 200 ~~~~dg~i~~~d~~~~~~-----------~~--------------~~--------------------------------- 221 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQ-----------LQ--------------QH--------------------------------- 221 (337)
T ss_dssp EEETTSEEEEEETTTTEE-----------EE--------------EE---------------------------------
T ss_pred EEecCCcEEEEECCCCce-----------Ee--------------ee---------------------------------
Confidence 999999999999864410 00 00
Q ss_pred EcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccC
Q 001321 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1100)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1100)
. .. +.
T Consensus 222 ~-------------------~~-----------------------------~~--------------------------- 226 (337)
T 1gxr_A 222 D-------------------FT-----------------------------SQ--------------------------- 226 (337)
T ss_dssp E-------------------CS-----------------------------SC---------------------------
T ss_pred c-------------------CC-----------------------------Cc---------------------------
Confidence 0 00 00
Q ss_pred CcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCc
Q 001321 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1100)
Q Consensus 427 p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGt 506 (1100)
+..+.++|+++++++++.||.
T Consensus 227 -----------------------------------------------------------v~~~~~s~~~~~l~~~~~~~~ 247 (337)
T 1gxr_A 227 -----------------------------------------------------------IFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eEEEEECCCCCEEEEEcCCCc
Confidence 011246677889999999999
Q ss_pred EEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceee
Q 001321 507 VRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1100)
Q Consensus 507 IriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1100)
|++||+..+... .+..|...|++++|+|++++|++++.||.|++|++....
T Consensus 248 i~~~~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~----------------- 298 (337)
T 1gxr_A 248 VEVLHVNKPDKY------------QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA----------------- 298 (337)
T ss_dssp EEEEETTSSCEE------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------
T ss_pred EEEEECCCCCeE------------EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe-----------------
Confidence 999999887632 356788999999999999999999999999999998752
Q ss_pred ccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 587 i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
......|..+|++++|+|++++|++|+.||.|++||+.
T Consensus 299 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 299 ---------SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ---------EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ---------EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 12335689999999999999999999999999999973
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.5e-32 Score=306.86 Aligned_cols=200 Identities=17% Similarity=0.233 Sum_probs=171.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS- 109 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~- 109 (1100)
.||.+.|.+++|+|++++||+|+.||.|+||+.... .......|...|.+++|+|++.+|++++.|+.|++||+.++.
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 489999999999999999999999999999998544 445667899999999999999999999999999999998763
Q ss_pred ---eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 110 ---LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 110 ---~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
....+ .|.+.|+++.|++++. +++|+.||+|++|++.. +... ..+.+|. ..|.+++|+
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~--~~~~---~~~~~h~------------~~v~~~~~~ 193 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET--GQQT---TTFTGHT------------GDVMSLSLA 193 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT--TEEE---EEECCCS------------SCEEEEEEC
T ss_pred cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC--CcEE---EEEcCCC------------CceEEEEEC
Confidence 23333 6788999999998875 88999999999999764 4443 3366666 889999998
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
| ++.++++|+.|+.|++||+.++.... +.+| ...|.+++|. |++.+
T Consensus 194 ~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~~~~ 240 (340)
T 1got_B 194 P--DTRLFVSGACDASAKLWDVREGMCRQTFTGH------------------------------ESDINAICFF-PNGNA 240 (340)
T ss_dssp T--TSSEEEEEETTSCEEEEETTTCSEEEEECCC------------------------------SSCEEEEEEC-TTSSE
T ss_pred C--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------------------------cCCEEEEEEc-CCCCE
Confidence 8 68889999999999999999987654 4445 7789999986 99999
Q ss_pred EEEEEcCCcEEEEecCCC
Q 001321 265 LAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1100)
|++|+.||.|++||+.++
T Consensus 241 l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 241 FATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EEEEETTSCEEEEETTTT
T ss_pred EEEEcCCCcEEEEECCCC
Confidence 999999999999998643
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-32 Score=314.34 Aligned_cols=319 Identities=14% Similarity=0.147 Sum_probs=217.8
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC------CCcEEEEEcCCCce---
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN------DNEIQVWSLESRSL--- 110 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~------d~~I~vWd~~s~~~--- 110 (1100)
.+.+.++..+ ..+..+.....|+++... ...|...|.+++|+|||.+|++++. |+.|++|+..++..
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~---p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA---PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC---cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 3555565555 444557888999885432 3579999999999999999999998 67899999877643
Q ss_pred --eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 111 --ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 111 --l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.....|...|++++|+|++.+ ++++.+|+|+||++...+..... .+...+|. ..|.+|+|+|
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~-~~~~~~h~------------~~V~~v~~sp-- 149 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVN-KFAKYEHD------------DIVKTLSVFS-- 149 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCC-CEEECCCS------------SCEEEEEECS--
T ss_pred EecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEE-eeccCCCC------------CCEEEEEECC--
Confidence 234477888999999999765 56778999999998763322221 13344444 8999999988
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILA 266 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~ 266 (1100)
++++|++++.|+.|++||+.+++.+..+ +| ...|.+++|. |++. .++
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s-~~~~~~~~ 198 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------------------------------SSEVNCVAAC-PGKDTIFL 198 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEEEEEEC-TTCSSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEc-cCCCceee
Confidence 7888999999999999999999876543 45 7889999986 8774 789
Q ss_pred EEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEE
Q 001321 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl 346 (1100)
+++.||.|++||+.+++... .+.. ..
T Consensus 199 s~~~dg~v~~wd~~~~~~~~-----------~~~~---------------------~~---------------------- 224 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPAT-----------RIDF---------------------CA---------------------- 224 (357)
T ss_dssp EEETTSCEEECCTTSSSCBC-----------BCCC---------------------TT----------------------
T ss_pred eeccCCceEEEECCCCceee-----------eeee---------------------cc----------------------
Confidence 99999999999987552111 0000 00
Q ss_pred EcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccC
Q 001321 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1100)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1100)
T Consensus 225 -------------------------------------------------------------------------------- 224 (357)
T 4g56_B 225 -------------------------------------------------------------------------------- 224 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCC-CcEEEEEecCC
Q 001321 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV-DRVYLAGYHDG 505 (1100)
Q Consensus 427 p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~-~~~l~Tg~~DG 505 (1100)
+...+ .+++++|+ +.+|++|+.||
T Consensus 225 ------~~~~v-------------------------------------------------~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 225 ------SDTIP-------------------------------------------------TSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp ------CCSCE-------------------------------------------------EEEEECTTSTTEEEEEESSS
T ss_pred ------ccccc-------------------------------------------------cchhhhhcccceEEEeeccc
Confidence 00000 01133443 45899999999
Q ss_pred cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC-CeEEEEecCceEEEEEecCCCCCcceeeeccCCCce
Q 001321 506 SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1100)
Q Consensus 506 tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1100)
.|++||+..+.+. ..+.+|...|++|+|+|++ ++||+|+.||.|+|||+...
T Consensus 250 ~i~~wd~~~~~~~-----------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------- 302 (357)
T 4g56_B 250 NVSLVNIKNPDSA-----------QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------- 302 (357)
T ss_dssp CEEEEESSCGGGC-----------EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC----------------
T ss_pred ceeEEECCCCcEe-----------EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----------------
Confidence 9999999887754 4567899999999999987 58999999999999998764
Q ss_pred eeccCCCcceeEEEEeecCcCeEEEEEcC-CCCEEEEEeCCceEEEEecCCc
Q 001321 585 HALPEGKISLCRAVFSLVNSPVRALQFTS-SGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 585 ~~i~~~~~~~~~~~~~~h~~~VtsLafSp-~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
.+....+|.++|++|+|+| ++++||+|+.||+|++||+...
T Consensus 303 ----------~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 ----------EVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ----------EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ----------cEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 1234458999999999998 7999999999999999999754
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-31 Score=300.58 Aligned_cols=203 Identities=13% Similarity=0.226 Sum_probs=171.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l 111 (1100)
||.+.|.+++|+|++++||+|+.||.|+||+.... .......|..+|.+++|+|++.+|++++.|++|++||+.+++.+
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 78999999999999999999999999999999654 44566789999999999999999999999999999999999887
Q ss_pred eee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 112 ~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
..+ .|.+.|++++|+|+++++++|+.||+|++|++.... .+. ..+.+|. ..|.+++|+|. ++
T Consensus 91 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~---~~~~~h~------------~~v~~v~~~p~-~~ 153 (304)
T 2ynn_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALE---QTFEGHE------------HFVMCVAFNPK-DP 153 (304)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEE---EEECCCC------------SCEEEEEECTT-CT
T ss_pred EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chh---hhhcccC------------CcEEEEEECCC-CC
Confidence 776 688999999999999999999999999999987521 222 2355665 88999999985 56
Q ss_pred CEEEEEEcCCEEEEEEccCCEEEE-E-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec-CCCCEEEE
Q 001321 191 NRVLIAYENALVILWDVSEAQIIF-V-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS-SSGSILAV 267 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~~~-~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s-pdg~~l~s 267 (1100)
.+|++|+.|+.|++||+.+..... . .+| ...+..++|.. +++.+|++
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------------------------ERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSCSEEEECCC------------------------------TTCEEEEEECCSTTCCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCccceeccCC------------------------------cCcEEEEEEEEcCCCCEEEE
Confidence 679999999999999998764322 2 122 56688888751 37889999
Q ss_pred EEcCCcEEEEecCCC
Q 001321 268 GYIDGDILLWNTSTT 282 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1100)
|+.||+|++||+.++
T Consensus 204 ~s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTK 218 (304)
T ss_dssp EETTSEEEEEETTTT
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999998644
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-32 Score=319.38 Aligned_cols=312 Identities=13% Similarity=0.199 Sum_probs=238.2
Q ss_pred EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
...+.+|.++|.+++|+|++.+|++++.|++|+|||+.+++....+ .|...|.+++|+|+++++++|+.|+.|+||++.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 3456799999999999999999999999999999999999887776 677889999999999999999999999999987
Q ss_pred cCCCeeee--eceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccc
Q 001321 148 ADEGKLFQ--LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1100)
Q Consensus 148 ~~~~~l~~--~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~ 225 (1100)
........ ....+.+|. +.|.++.|+|.. +.+|++++.|++|++||+.+++.+..++.
T Consensus 139 ~~~~~~~~~~~~~~~~gh~------------~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~------- 198 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHK------------GYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGS------- 198 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCS------------SCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECC-------
T ss_pred CCccccCCccceeeccCCC------------cceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeec-------
Confidence 52211000 001234444 889999999863 44599999999999999999987766532
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
.. ...+...|.+++|.++++.++++|+.||.|++||+..... .+
T Consensus 199 ~~-----------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~----------~~--------- 242 (380)
T 3iz6_a 199 EF-----------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR----------AV--------- 242 (380)
T ss_dssp CS-----------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC----------CC---------
T ss_pred cc-----------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc----------ce---------
Confidence 00 0011678999999756899999999999999999853200 00
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
..+
T Consensus 243 -----~~~------------------------------------------------------------------------ 245 (380)
T 3iz6_a 243 -----RTY------------------------------------------------------------------------ 245 (380)
T ss_dssp -----EEE------------------------------------------------------------------------
T ss_pred -----EEE------------------------------------------------------------------------
Confidence 000
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
.||...+..++++|++++|+||+.||+|+|||+..+.....+..... ....+...|++++|+
T Consensus 246 --------------~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 246 --------------HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD----RNDNELPIVTSVAFS 307 (380)
T ss_dssp --------------CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS----SSCCSSCSCSEEEEC
T ss_pred --------------CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc----ccccccCceEEEEEC
Confidence 00111123346778889999999999999999998875533222111 012233469999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEE----eecCcCeEEEEEcCCCCEEEEE
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVF----SLVNSPVRALQFTSSGAKLAVG 621 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~h~~~VtsLafSp~g~~LavG 621 (1100)
|++++|++|+.||.|++||..... +...+ .+|.+.|++|+|+|+|.+||+|
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLAE-------------------------MVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTCC-------------------------EEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred CCCCEEEEEECCCCEEEEECCCCc-------------------------eEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 999999999999999999986642 22222 5799999999999999999999
Q ss_pred eCCceEEEEecCCce
Q 001321 622 FECGRVAVLDMNLLS 636 (1100)
Q Consensus 622 s~dG~V~vwD~~~~~ 636 (1100)
+.||+|+|||+.+.+
T Consensus 363 s~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 363 SWDKNLKIWAFSGHR 377 (380)
T ss_dssp CTTSCEEEEECCSSS
T ss_pred eCCCCEEEEecCCCc
Confidence 999999999998653
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.9e-32 Score=308.84 Aligned_cols=302 Identities=12% Similarity=0.118 Sum_probs=221.4
Q ss_pred EEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC------------CceeeeeecCCCeEEEEEe
Q 001321 59 IKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES------------RSLACCLKWESNITAFSVI 126 (1100)
Q Consensus 59 I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s------------~~~l~~~~~~~~Vt~~~~s 126 (1100)
.+.|+..... ...|...|.+++|+|||.+|++++ |+++++||... +.......++..|++++|+
T Consensus 16 ~r~w~~~~~~---~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 16 AREWNLPPNA---PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp -------CCS---CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred ccccCCCCCC---cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 3567664322 234677899999999999888777 77888887321 1223444667889999999
Q ss_pred cCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEE
Q 001321 127 SGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 127 ~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwd 206 (1100)
|++ .+++|+.||+|+||+++..+..... .+...+|. +.|.+|+|+| +|++|++|+.|++|++||
T Consensus 92 ~d~-~l~~~s~dg~v~lWd~~~~~~~~~~-~~~~~~H~------------~~V~~v~~sp--dg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 92 GER-GILVASDSGAVELWELDENETLIVS-KFCKYEHD------------DIVSTVSVLS--SGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp TTT-EEEEEETTSEEEEEEECTTSSCEEE-EEEEECCS------------SCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred CCC-eEEEEECCCEEEEEeccCCCceeEe-eccccCCC------------CCEEEEEECC--CCCEEEEEeCCCeEEEEE
Confidence 984 6889999999999999864433221 23344565 8999999988 788999999999999999
Q ss_pred ccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEEecCCCCC
Q 001321 207 VSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 207 l~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lWd~~~~~~ 284 (1100)
+.+++.+. +.+| ...|.+++|. |++. .+++++.||.|++||+.+++.
T Consensus 156 ~~~~~~~~~~~~h------------------------------~~~V~~~~~~-~~~~~~l~s~s~D~~v~iwd~~~~~~ 204 (344)
T 4gqb_B 156 LAQQVVLSSYRAH------------------------------AAQVTCVAAS-PHKDSVFLSCSEDNRILLWDTRCPKP 204 (344)
T ss_dssp TTTTEEEEEECCC------------------------------SSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred CCCCcEEEEEcCc------------------------------CCceEEEEec-CCCCCceeeeccccccccccccccce
Confidence 99998765 4456 7889999986 8874 789999999999999875511
Q ss_pred CCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeee
Q 001321 285 TKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVD 364 (1100)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~ 364 (1100)
. ..+.. . .
T Consensus 205 ~-----------~~~~~---------------------~---------~------------------------------- 212 (344)
T 4gqb_B 205 A-----------SQIGC---------------------S---------A------------------------------- 212 (344)
T ss_dssp E-----------EECC----------------------------------------------------------------
T ss_pred e-----------eeeec---------------------c---------e-------------------------------
Confidence 0 00000 0 0
Q ss_pred ecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEe
Q 001321 365 ITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFML 444 (1100)
Q Consensus 365 l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~ 444 (1100)
+...+
T Consensus 213 --------------------------------------------------------------------~~~~~------- 217 (344)
T 4gqb_B 213 --------------------------------------------------------------------PGYLP------- 217 (344)
T ss_dssp ---------------------------------------------------------------------CCCE-------
T ss_pred --------------------------------------------------------------------eeccc-------
Confidence 00000
Q ss_pred ccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCC-CCcEEEEEecCCcEEEeeCCCCceeEEeee
Q 001321 445 LPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS-VDRVYLAGYHDGSVRIWDATYPVFKLICAL 523 (1100)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~-~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l 523 (1100)
.++++++ +++++++|+.||+|+|||+..+.+.
T Consensus 218 ------------------------------------------~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----- 250 (344)
T 4gqb_B 218 ------------------------------------------TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----- 250 (344)
T ss_dssp ------------------------------------------EEEEECSSCTTEEEEEETTSEEEEEESCC--CC-----
T ss_pred ------------------------------------------eeeeecCCCCcceEEeccCCcEEEEECCCCcEE-----
Confidence 0012333 4558999999999999999887754
Q ss_pred ccceeeeeecCCCCCeeEEEEeeCC-CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeec
Q 001321 524 DAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV 602 (1100)
Q Consensus 524 ~~~~~~~~l~~h~~~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h 602 (1100)
..+.+|...|++|+|+|++ ++||+|+.||.|+|||+... .+..+.+|
T Consensus 251 ------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--------------------------~~~~~~~H 298 (344)
T 4gqb_B 251 ------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS--------------------------ELFRSQAH 298 (344)
T ss_dssp ------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC--------------------------EEEEECCC
T ss_pred ------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--------------------------cEEEEcCC
Confidence 4577899999999999998 57999999999999998764 23456899
Q ss_pred CcCeEEEEEcCCCC-EEEEEeCCceEEEEecCCceE
Q 001321 603 NSPVRALQFTSSGA-KLAVGFECGRVAVLDMNLLSV 637 (1100)
Q Consensus 603 ~~~VtsLafSp~g~-~LavGs~dG~V~vwD~~~~~~ 637 (1100)
.+.|++|+|+|++. +|++|+.||+|++|++.+..+
T Consensus 299 ~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 299 RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999999985 678999999999999986543
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-31 Score=307.36 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=173.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC--
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-- 108 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-- 108 (1100)
.||.+.|.|++|+|++++||+|+.||.|+||+... ........|...|.+++|+|++.+|++++.|+.+.+|++...
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence 49999999999999999999999999999999844 444455678889999999999999999999999999998654
Q ss_pred -----ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 109 -----SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 109 -----~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
.......|.+.|++++|+|++.++++|+.||+|++|++.. ++... .+.+|. ..|.++.
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~---~~~~h~------------~~v~~~~ 203 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQ---SFHGHG------------ADVLCLD 203 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEE---EEECCS------------SCEEEEE
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEE---EEcCCC------------CCeEEEE
Confidence 1223336888999999999999999999999999999865 44442 366665 8899999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
|+|..++.+|++|+.||.|++||+.+++.+..+ +| ...|.+++|. |++
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~~ 252 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH------------------------------ESDVNSVRYY-PSG 252 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-TTS
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------------------------CCCeEEEEEe-CCC
Confidence 999777888999999999999999998775543 45 7889999986 999
Q ss_pred CEEEEEEcCCcEEEEecCC
Q 001321 263 SILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~ 281 (1100)
..|++|+.||+|++||+..
T Consensus 253 ~~l~s~s~D~~v~lwd~~~ 271 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRA 271 (354)
T ss_dssp SEEEEEETTSCEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCC
Confidence 9999999999999999864
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=331.24 Aligned_cols=366 Identities=10% Similarity=0.129 Sum_probs=262.6
Q ss_pred CCCeEEEEEcCCCC-EEEEE----------ECCCeEEEEeCCCce---EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcE
Q 001321 35 PATASILAFDHIQR-LLAIA----------TLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQNQGFLISITNDNEI 100 (1100)
Q Consensus 35 ~~~v~~la~sp~~~-lLA~g----------s~dG~I~vw~~~~~~---~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I 100 (1100)
...|.+++|+|+++ +||+| +.||.|+||+....+ .+....|..+|.+++|+|++.+|++++.|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 34789999999987 99999 889999999997654 45556799999999999999999999999999
Q ss_pred EEEEcCC----Cceeeee-ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeee-eceeecccccccccCCCC
Q 001321 101 QVWSLES----RSLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAGFPL 173 (1100)
Q Consensus 101 ~vWd~~s----~~~l~~~-~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~~ 173 (1100)
++||+.+ .+.+..+ .|.+.|++++|+|+ +.++++|+.||.|++|++......... .++.+. ...
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---------~~~ 162 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG---------QSM 162 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC---------CSC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc---------ccc
Confidence 9999988 3344444 68899999999998 899999999999999998754311000 001110 001
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceE
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~ 253 (1100)
.+...|.+++|+|. .+.++++++.||.|++||+.+++....+...... ..+...|.
T Consensus 163 ~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------------------~~~~~~v~ 218 (416)
T 2pm9_A 163 SSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN-----------------------SGIKQQLS 218 (416)
T ss_dssp CSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS-----------------------SCCCCCEE
T ss_pred CCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccc-----------------------cccCCceE
Confidence 22378999999884 2677999999999999999999876655330000 01156799
Q ss_pred EEEEecCCC-CEEEEEEcCC---cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceE
Q 001321 254 ALCWASSSG-SILAVGYIDG---DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRL 329 (1100)
Q Consensus 254 sl~w~spdg-~~l~sg~~DG---~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~l 329 (1100)
+++|. |++ .++++++.|| .|++||+.++.... .. + .
T Consensus 219 ~~~~~-~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~----------~~--------------~---------~------ 258 (416)
T 2pm9_A 219 VVEWH-PKNSTRVATATGSDNDPSILIWDLRNANTPL----------QT--------------L---------N------ 258 (416)
T ss_dssp EEEEC-SSCTTEEEEEECCSSSCCCCEEETTSTTSCS----------BC--------------C---------C------
T ss_pred EEEEC-CCCCCEEEEEECCCCCceEEEEeCCCCCCCc----------EE--------------e---------e------
Confidence 99996 887 6899999999 99999987541100 00 0 0
Q ss_pred EEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCcee
Q 001321 330 FVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLT 409 (1100)
Q Consensus 330 lv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~ 409 (1100)
T Consensus 259 -------------------------------------------------------------------------------- 258 (416)
T 2pm9_A 259 -------------------------------------------------------------------------------- 258 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCcc
Q 001321 410 TLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPIT 489 (1100)
Q Consensus 410 ~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~ 489 (1100)
.++...+..+
T Consensus 259 ----------------------------------------------------------------------~~~~~~v~~~ 268 (416)
T 2pm9_A 259 ----------------------------------------------------------------------QGHQKGILSL 268 (416)
T ss_dssp ----------------------------------------------------------------------SCCSSCEEEE
T ss_pred ----------------------------------------------------------------------cCccCceeEE
Confidence 0000000112
Q ss_pred ccCC-CCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC-CeEEEEecCceEEEEEecC
Q 001321 490 KCHS-VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-SSLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 490 ~~s~-~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~-~~Lasg~~dG~V~lw~l~~ 567 (1100)
+++| ++++|++++.||+|++||+..+.+. ..+.+|...|++++|+|++ .+|++++.||.|+||++..
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 4555 6779999999999999999887654 3466888999999999999 8999999999999999987
Q ss_pred CCCCcceeeec---cC--------CCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 568 SLDAKNFLFVL---ET--------KSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 568 ~~~~~~~~~~~---~~--------~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
........-.. .. .+.+....+...+.+ .....|..+|++++|+|+|++||+|+.||+|+|||+.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 64322110000 00 000000000011111 112337888999999999999999999999999998854
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-32 Score=315.34 Aligned_cols=354 Identities=17% Similarity=0.210 Sum_probs=257.6
Q ss_pred CeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCC-EEEEEECCCcEEEEEc----CCCc------eeeeee---------
Q 001321 57 GRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSL----ESRS------LACCLK--------- 115 (1100)
Q Consensus 57 G~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~----~s~~------~l~~~~--------- 115 (1100)
..+.+|+.+.. ..+....|..+|.+++|+|++. +|++++.|+.|++||+ .+++ ....+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 44567777544 3444556779999999999999 9999999999999999 8887 344443
Q ss_pred --cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 116 --WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 116 --~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
|.+.|++++|+|++++|++|+.+|.|++|+. .+... ..+..|. ..|.+++|+| ++.+|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~---~~~~~~~------------~~v~~~~~~~--~~~~l 164 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALL---NVLNFHR------------APIVSVKWNK--DGTHI 164 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEE---EEECCCC------------SCEEEEEECT--TSSEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCee---eeccCCC------------ccEEEEEECC--CCCEE
Confidence 3568999999999999999999999999982 23443 2355555 8899999988 68889
Q ss_pred EEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc
Q 001321 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~ 273 (1100)
++++.||.|++||+.+++....+........ .. ...........+.+++|. |++ .+++++.||.
T Consensus 165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g~ 228 (425)
T 1r5m_A 165 ISMDVENVTILWNVISGTVMQHFELKETGGS---------SI-----NAENHSGDGSLGVDVEWV-DDD-KFVIPGPKGA 228 (425)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCC-----------------------------CCCBSCCEEE-ETT-EEEEECGGGC
T ss_pred EEEecCCeEEEEECCCCcEEEEeeccccCcc---------ce-----eeccccCCcceeeEEEEc-CCC-EEEEEcCCCe
Confidence 9999999999999999987665432000000 00 000000012338889986 765 5899999999
Q ss_pred EEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccc
Q 001321 274 ILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSG 353 (1100)
Q Consensus 274 I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~ 353 (1100)
|++||+.++... . .+ . +
T Consensus 229 i~~~d~~~~~~~-----------~--------------~~---------~---------~-------------------- 245 (425)
T 1r5m_A 229 IFVYQITEKTPT-----------G--------------KL---------I---------G-------------------- 245 (425)
T ss_dssp EEEEETTCSSCS-----------E--------------EE---------C---------C--------------------
T ss_pred EEEEEcCCCcee-----------e--------------ee---------c---------c--------------------
Confidence 999998643100 0 00 0 0
Q ss_pred cccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccC
Q 001321 354 MENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPIS 433 (1100)
Q Consensus 354 ~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 433 (1100)
+
T Consensus 246 -------------------------------------------------------------------------------~ 246 (425)
T 1r5m_A 246 -------------------------------------------------------------------------------H 246 (425)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCC
Q 001321 434 DPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDAT 513 (1100)
Q Consensus 434 ~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~ 513 (1100)
.. .+..+++++++++|++++.||.|++||+.
T Consensus 247 ~~-------------------------------------------------~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 247 HG-------------------------------------------------PISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp SS-------------------------------------------------CEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred CC-------------------------------------------------ceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 00 00112455677799999999999999998
Q ss_pred CCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcc
Q 001321 514 YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKIS 593 (1100)
Q Consensus 514 ~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 593 (1100)
.+.+. ..+..|...|++++|+|++ +|++++.||.|++|++...
T Consensus 278 ~~~~~-----------~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------------------------- 320 (425)
T 1r5m_A 278 NGNSQ-----------NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------------------------- 320 (425)
T ss_dssp SBSCS-----------EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-------------------------
T ss_pred CCccc-----------eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-------------------------
Confidence 77644 3456788999999999999 9999999999999999764
Q ss_pred eeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCce--------------------EEEEeecCCCCCC--Ce
Q 001321 594 LCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLS--------------------VLFFTDDISGSSS--PI 651 (1100)
Q Consensus 594 ~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~--------------------~~~~~~~~~~~~~--~V 651 (1100)
.++..+..|..+|++++|+|++++|++|+.||.|+|||+.+.. .+ ..+.+|.. .|
T Consensus 321 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v 397 (425)
T 1r5m_A 321 TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY---ASYQSSQDNDYI 397 (425)
T ss_dssp EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEE---EEECCTTCCCCE
T ss_pred cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhh---hhhcCcccCCce
Confidence 2456677899999999999999999999999999999999877 54 23345765 99
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 652 ~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
++++|++.+ .+|++++.||.|.+||.
T Consensus 398 ~~~~~s~~~----------------------~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 398 FDLSWNCAG----------------------NKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEECTTS----------------------SEEEEEESSSCCEEEEC
T ss_pred EEEEccCCC----------------------ceEEEEecCceEEEEee
Confidence 999998554 34999999999999994
No 29
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.1e-31 Score=337.04 Aligned_cols=391 Identities=13% Similarity=0.205 Sum_probs=275.0
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEec
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDA 148 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~ 148 (1100)
....+|..+|++++|+|++.+|++++.+|.|+|||+.+++.+..+ .|.+.|++++|+|++++|++|+.+|.|+||+++.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 345679999999999999999999999999999999999888777 5889999999999999999999999999999875
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC-EEEE-EecCCccccccc
Q 001321 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA-QIIF-VGGGKDLQLKDG 226 (1100)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~-~~~~-~~~~~~~~~~~~ 226 (1100)
++.. ..+.+|. ..|.+++|+| ++.+|++++.||.|++||+.++ .... ..+|
T Consensus 87 --~~~~---~~~~~~~------------~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-------- 139 (814)
T 3mkq_A 87 --GEKV---VDFEAHP------------DYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-------- 139 (814)
T ss_dssp --CCEE---EEEECCS------------SCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------
T ss_pred --CcEE---EEEecCC------------CCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------
Confidence 3333 2355555 8899999988 6888999999999999999987 4433 4445
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-CCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
...|++++|. | ++..+++++.||.|++||+.++... ..+...
T Consensus 140 ----------------------~~~v~~~~~~-p~~~~~l~~~~~dg~v~vwd~~~~~~~-----------~~~~~~--- 182 (814)
T 3mkq_A 140 ----------------------EHFVMCVAFN-PKDPSTFASGCLDRTVKVWSLGQSTPN-----------FTLTTG--- 182 (814)
T ss_dssp ----------------------SSCEEEEEEE-TTEEEEEEEEETTSEEEEEETTCSSCS-----------EEEECC---
T ss_pred ----------------------CCcEEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCcce-----------eEEecC---
Confidence 7889999996 8 8999999999999999998765221 111110
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
...++..+.|+. .+++.++++++.+
T Consensus 183 ~~~~v~~~~~~~------~~~~~~l~~~~~d------------------------------------------------- 207 (814)
T 3mkq_A 183 QERGVNYVDYYP------LPDKPYMITASDD------------------------------------------------- 207 (814)
T ss_dssp CTTCCCEEEECC------STTCCEEEEECTT-------------------------------------------------
T ss_pred CCCCEEEEEEEE------CCCCCEEEEEeCC-------------------------------------------------
Confidence 011222222211 1244555555544
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
|.+.+|+..........
T Consensus 208 ------------g~i~~~d~~~~~~~~~~--------------------------------------------------- 224 (814)
T 3mkq_A 208 ------------LTIKIWDYQTKSCVATL--------------------------------------------------- 224 (814)
T ss_dssp ------------SEEEEEETTTTEEEEEE---------------------------------------------------
T ss_pred ------------CEEEEEECCCCcEEEEE---------------------------------------------------
Confidence 44444442111100000
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
.++...+..+.++|+++++++|+.||+|++||..++.+. ..+..|...|++++|+
T Consensus 225 --------------~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~ 279 (814)
T 3mkq_A 225 --------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-----------KTLNVGLERSWCIATH 279 (814)
T ss_dssp --------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE-----------EEECCSSSSEEEEEEC
T ss_pred --------------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEeecCCCcEEEEEEc
Confidence 011122334478899999999999999999999987754 3466777899999999
Q ss_pred eCCCe-EEEEecCceEEEEEecCCCCCcce------eeeccC---CCc--------eeeccCCCcce-eEEEEeecCcCe
Q 001321 546 FINSS-LAVGNEFGLVYIYNLNGSLDAKNF------LFVLET---KSE--------VHALPEGKISL-CRAVFSLVNSPV 606 (1100)
Q Consensus 546 pd~~~-Lasg~~dG~V~lw~l~~~~~~~~~------~~~~~~---~~~--------~~~i~~~~~~~-~~~~~~~h~~~V 606 (1100)
|++.. +++++.++.+.+|++........+ ...... ..+ ...+..+.... ....+..+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (814)
T 3mkq_A 280 PTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359 (814)
T ss_dssp TTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCC
T ss_pred cCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCC
Confidence 99874 244555667889988664321111 010000 000 01111111111 123345677789
Q ss_pred EEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEE
Q 001321 607 RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII 686 (1100)
Q Consensus 607 tsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~ 686 (1100)
++++|+|+|++|++++ +|.+.+|++...... +.+.|.++.|++++.. |+
T Consensus 360 ~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~--------~~~~i~~~~~spdg~~----------------------la 408 (814)
T 3mkq_A 360 QSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK--------AFGKCQDFVWGPDSNS----------------------YA 408 (814)
T ss_dssp SEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--------EEEECSEEEECTTSSC----------------------EE
T ss_pred ceeEECCCCCEEEEec-CCEEEEEECcccccc--------CCCceEEEEEeCCCCe----------------------EE
Confidence 9999999999999998 899999998765544 3456778999865544 99
Q ss_pred EEecceeEEEEe
Q 001321 687 VLFKDAKISIVG 698 (1100)
Q Consensus 687 ~gt~dg~v~v~d 698 (1100)
+++.+|.|.+|+
T Consensus 409 ~~~~~g~v~l~~ 420 (814)
T 3mkq_A 409 LIDETGQIKYYK 420 (814)
T ss_dssp EECTTCCEEEEE
T ss_pred EEeCCCcEEEEE
Confidence 999999999997
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=307.69 Aligned_cols=293 Identities=14% Similarity=0.170 Sum_probs=231.6
Q ss_pred EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
...+.+|..+|.+++|+|++.+|++++.|++|+|||..+++....+ .+...|.+++|+|++.++++|+.|+.|++|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 3456789999999999999999999999999999999998877666 566789999999999999999999999999986
Q ss_pred cCCCeee-eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccc
Q 001321 148 ADEGKLF-QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKD 225 (1100)
Q Consensus 148 ~~~~~l~-~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~ 225 (1100)
....... .....+..|. ..|.++.|+| ++.+|++++.|++|++||+.+++.+. +.+|
T Consensus 137 ~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h------- 195 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHT------------NYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGH------- 195 (354)
T ss_dssp CCTTCCSGGGCEEEEECS------------SCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECC-------
T ss_pred ccccccccccceeeeccC------------CcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-------
Confidence 5321110 1112234444 8899999988 57789999999999999999987654 4456
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecC--CCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccc
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS--SGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSS 303 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp--dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (1100)
...|.+++|. | +|.+|++|+.||.|++||+.++.. +.
T Consensus 196 -----------------------~~~v~~~~~~-~~~~g~~l~sgs~Dg~v~~wd~~~~~~-----------~~------ 234 (354)
T 2pbi_B 196 -----------------------GADVLCLDLA-PSETGNTFVSGGCDKKAMVWDMRSGQC-----------VQ------ 234 (354)
T ss_dssp -----------------------SSCEEEEEEC-CCSSCCEEEEEETTSCEEEEETTTCCE-----------EE------
T ss_pred -----------------------CCCeEEEEEE-eCCCCCEEEEEeCCCeEEEEECCCCcE-----------EE------
Confidence 7789999875 5 578999999999999999865410 00
Q ss_pred cCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCC
Q 001321 304 AERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGAT 383 (1100)
Q Consensus 304 ~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~ 383 (1100)
.+ .
T Consensus 235 --------~~-------------------~-------------------------------------------------- 237 (354)
T 2pbi_B 235 --------AF-------------------E-------------------------------------------------- 237 (354)
T ss_dssp --------EE-------------------C--------------------------------------------------
T ss_pred --------Ee-------------------c--------------------------------------------------
Confidence 00 0
Q ss_pred CCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcc
Q 001321 384 VGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTK 463 (1100)
Q Consensus 384 ~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (1100)
T Consensus 238 -------------------------------------------------------------------------------- 237 (354)
T 2pbi_B 238 -------------------------------------------------------------------------------- 237 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEE
Q 001321 464 LHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLS 543 (1100)
Q Consensus 464 ~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~la 543 (1100)
+|...+..++++|++++|++|+.||+||+||+........+ ....+...+++++
T Consensus 238 -----------------~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~---------~~~~~~~~~~~~~ 291 (354)
T 2pbi_B 238 -----------------THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY---------SKESIIFGASSVD 291 (354)
T ss_dssp -----------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCTTCCSCEEEEE
T ss_pred -----------------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------cCCCcccceeEEE
Confidence 00000112256678889999999999999999876533111 1123345799999
Q ss_pred EeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeC
Q 001321 544 FCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE 623 (1100)
Q Consensus 544 fspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~ 623 (1100)
|+|++++|++|+.||.|+||++.... ++..+.+|.++|++++|+|+|++||+|+.
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~-------------------------~~~~l~~h~~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGS-------------------------RVSILFGHENRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCS-------------------------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCc-------------------------eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999987641 45667899999999999999999999999
Q ss_pred CceEEEEe
Q 001321 624 CGRVAVLD 631 (1100)
Q Consensus 624 dG~V~vwD 631 (1100)
||+|+||+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999996
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=310.60 Aligned_cols=204 Identities=15% Similarity=0.185 Sum_probs=160.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC------------CceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCc
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGD------------GIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~------------~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
.+++..|.+++|+|||++||+|+ |+.+|+|+.. .........|..+|.+++|+|+ ++|++++.|++
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCE
Confidence 45677899999999999999888 6777777631 1112233446778999999999 68999999999
Q ss_pred EEEEEcCCCceeeee-----ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001321 100 IQVWSLESRSLACCL-----KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~-----~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
|+|||+.+++.+... .|.+.|++++|+|++++|++|+.||+|+||++.. ++.. ..+.+|.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~~---~~~~~h~---------- 169 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVVL---SSYRAHA---------- 169 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEE---EEECCCS----------
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEE---EEEcCcC----------
Confidence 999999998654332 5788999999999999999999999999999764 5554 3367776
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
..|.+++|+|. ...++++++.|+.|++||+.+++....+.. ..+ ...+++
T Consensus 170 --~~V~~~~~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~--------------------~~~~~~ 219 (344)
T 4gqb_B 170 --AQVTCVAASPH-KDSVFLSCSEDNRILLWDTRCPKPASQIGC-------SAP--------------------GYLPTS 219 (344)
T ss_dssp --SCEEEEEECSS-CTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------------CCCEEE
T ss_pred --CceEEEEecCC-CCCceeeeccccccccccccccceeeeeec-------cee--------------------ecccee
Confidence 89999999885 234688999999999999999876654432 111 556889
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 255 LCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 255 l~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
++|+..++.++++|+.||.|++||+.++
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCC
Confidence 9987335678899999999999998654
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.3e-32 Score=315.47 Aligned_cols=356 Identities=13% Similarity=0.087 Sum_probs=253.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
...+++++|+|++++||+|+.||.|++|+....+..........+....|++++.+|++++.|+.|++||+.+++....+
T Consensus 56 ~~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 56 VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CBCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred cccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34456899999999999999999999999976655444333344556678999999999999999999999999988876
Q ss_pred -ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 -~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|.+.|++++|+|++++|++|+.||.|++|+++.. +.. ..+.+|. ..|.+++|+| ++.+|
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~--~~~---~~~~~h~------------~~v~~~~~~~--~~~~l 196 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG--SNP---RTLIGHR------------ATVTDIAIID--RGRNV 196 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CCC---EEEECCS------------SCEEEEEEET--TTTEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC--cCc---eEEcCCC------------CcEEEEEEcC--CCCEE
Confidence 78899999999999999999999999999998753 222 2255555 8999999988 68889
Q ss_pred EEEEcCCEEEEEEccCCEEEEEecC-C---cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 194 LIAYENALVILWDVSEAQIIFVGGG-K---DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~~~~~-~---~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
++++.||.|++||+.+++....+.. . .......+. ++............+.+++|. |+|.+|++|+
T Consensus 197 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 266 (420)
T 3vl1_A 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF---------VGTDRQLHEISTSKKNNLEFG-TYGKYVIAGH 266 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE---------ECCCSSCGGGCCCCCCTTCSS-CTTEEEEEEE
T ss_pred EEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe---------cCCcceeeecccCcccceEEc-CCCCEEEEEc
Confidence 9999999999999999987665432 0 000000000 000000000114566667764 8999999999
Q ss_pred cCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001321 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1100)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~ 349 (1100)
.||.|++||+.++.. .. .+ .
T Consensus 267 ~dg~i~i~d~~~~~~-----------~~--------------~~---------~-------------------------- 286 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQ-----------TI--------------QL---------P-------------------------- 286 (420)
T ss_dssp TTSCEEEEETTTCCE-----------EE--------------EE---------C--------------------------
T ss_pred CCCeEEEEECCCCce-----------eE--------------Ec---------c--------------------------
Confidence 999999999864410 00 00 0
Q ss_pred CccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcc
Q 001321 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1100)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~ 429 (1100)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCc-EEEEEecCCcEE
Q 001321 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDR-VYLAGYHDGSVR 508 (1100)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~-~l~Tg~~DGtIr 508 (1100)
.++...+..++++|+++ ++++|+.||.|+
T Consensus 287 --------------------------------------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~ 316 (420)
T 3vl1_A 287 --------------------------------------------------SKFTCSCNSLTVDGNNANYIYAGYENGMLA 316 (420)
T ss_dssp --------------------------------------------------CTTSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred --------------------------------------------------cccCCCceeEEEeCCCCCEEEEEeCCCeEE
Confidence 00000111224667777 999999999999
Q ss_pred EeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeecc
Q 001321 509 IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALP 588 (1100)
Q Consensus 509 iWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~ 588 (1100)
+||+..+... ......+|...|+++.| +++++|++++.||.|++|++......... .
T Consensus 317 vwd~~~~~~~---------~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-------------~ 373 (420)
T 3vl1_A 317 QWDLRSPECP---------VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPA-------------I 373 (420)
T ss_dssp EEETTCTTSC---------SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCE-------------E
T ss_pred EEEcCCCcCc---------hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccc-------------e
Confidence 9999876421 00212347778999855 58889999999999999999874221110 0
Q ss_pred CCCcceeEEEEeecCcCeEEEEEcCCCC---EEEEEeCCceEEEEecCCc
Q 001321 589 EGKISLCRAVFSLVNSPVRALQFTSSGA---KLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 589 ~~~~~~~~~~~~~h~~~VtsLafSp~g~---~LavGs~dG~V~vwD~~~~ 635 (1100)
... ....+..|.+.|++++|+|++. .|++.+.+|.+.+|+++.+
T Consensus 374 ~~~---~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 374 EFE---TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp CTT---SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred ecc---CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 000 1123568999999999999998 5555556789999998754
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5e-31 Score=306.90 Aligned_cols=303 Identities=15% Similarity=0.200 Sum_probs=231.6
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC-------------------CCeEEEEEecCCCEE
Q 001321 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-------------------SNITAFSVISGSHFM 132 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~-------------------~~Vt~~~~s~~~~~l 132 (1100)
..+|..+|.+++|+|||.+|++++ ++.+++|++.+++.+..+... ..|++++|+|++++|
T Consensus 60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 347999999999999999999876 789999999999887665322 139999999999999
Q ss_pred EEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE
Q 001321 133 YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI 212 (1100)
Q Consensus 133 ~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~ 212 (1100)
++|+.||.|+||+++. ++.. ..+.+|. ..|.+++|+| ++.+|++++.|+.|++||+.+++.
T Consensus 139 ~s~~~d~~i~iwd~~~--~~~~---~~~~~h~------------~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 139 ATGAEDRLIRIWDIEN--RKIV---MILQGHE------------QDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp EEEETTSCEEEEETTT--TEEE---EEECCCS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEcCCCeEEEEECCC--CcEE---EEEccCC------------CCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCee
Confidence 9999999999999764 4444 3366666 8899999988 688899999999999999999987
Q ss_pred EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-CCCEEEEEEcCCcEEEEecCCCCCCCCcccC
Q 001321 213 IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYIDGDILLWNTSTTASTKGQQTG 291 (1100)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-dg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~ 291 (1100)
...+.+ ...+.+++|. | +|.+|++|+.||.|++||+.++...
T Consensus 200 ~~~~~~------------------------------~~~v~~~~~~-~~~~~~l~~~s~d~~v~iwd~~~~~~~------ 242 (393)
T 1erj_A 200 SLTLSI------------------------------EDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLV------ 242 (393)
T ss_dssp EEEEEC------------------------------SSCEEEEEEC-STTCCEEEEEETTSCEEEEETTTCCEE------
T ss_pred EEEEEc------------------------------CCCcEEEEEE-CCCCCEEEEEcCCCcEEEEECCCCcEE------
Confidence 766555 5678999986 7 8999999999999999998654100
Q ss_pred CCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcc
Q 001321 292 SRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSF 371 (1100)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v 371 (1100)
..+.. . . .
T Consensus 243 -----~~~~~--~------------------~------------~----------------------------------- 250 (393)
T 1erj_A 243 -----ERLDS--E------------------N------------E----------------------------------- 250 (393)
T ss_dssp -----EEEC-----------------------------------------------------------------------
T ss_pred -----Eeecc--c------------------c------------c-----------------------------------
Confidence 00000 0 0 0
Q ss_pred eeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCc
Q 001321 372 ADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHS 451 (1100)
Q Consensus 372 ~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~ 451 (1100)
T Consensus 251 -------------------------------------------------------------------------------- 250 (393)
T 1erj_A 251 -------------------------------------------------------------------------------- 250 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeee-ccceeee
Q 001321 452 SKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICAL-DAEVQGI 530 (1100)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l-~~~~~~~ 530 (1100)
...||...+..+++++++++|++|+.||+|++||+........... .......
T Consensus 251 --------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~ 304 (393)
T 1erj_A 251 --------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304 (393)
T ss_dssp ----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred --------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE
Confidence 0001111223336778889999999999999999976432211100 0011123
Q ss_pred eecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEE
Q 001321 531 EVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQ 610 (1100)
Q Consensus 531 ~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLa 610 (1100)
.+.+|...|.+++|+|++.+|++|+.||.|++|++... .++..+.+|.+.|++++
T Consensus 305 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-------------------------~~~~~l~~h~~~v~~v~ 359 (393)
T 1erj_A 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------------NPLLMLQGHRNSVISVA 359 (393)
T ss_dssp EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEE
T ss_pred EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------------eEEEEECCCCCCEEEEE
Confidence 46789999999999999999999999999999998764 24567889999999999
Q ss_pred EcC------CCCEEEEEeCCceEEEEecCC
Q 001321 611 FTS------SGAKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 611 fSp------~g~~LavGs~dG~V~vwD~~~ 634 (1100)
|++ ++.+||+|+.||+|+|||+..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 986 678999999999999999864
No 34
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-30 Score=292.13 Aligned_cols=203 Identities=18% Similarity=0.294 Sum_probs=175.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
.||...|++++|+|++++||+|+.||.|+||+... .......+|..+|.+++|+|++.+|++++.|+.|++||+.+++.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 58999999999999999999999999999999954 44456778999999999999999999999999999999999988
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
+..+ .|...|.+++|+|+++++++|+.||.|++|++.. ++.. ..++.|. .+|.++.|+| +
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~---~~~~~~~------------~~v~~~~~~~--~ 160 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCL---KTLPAHS------------DPVSAVHFNR--D 160 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEE---EEECCCS------------SCEEEEEECT--T
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEEE---EEecCCC------------CcEEEEEEcC--C
Confidence 8777 6778999999999999999999999999999864 3333 2355555 7899999988 6
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
+.++++++.||.|++||+.+++....+.. .+...+.+++|. |++.+|++++
T Consensus 161 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----------------------------~~~~~~~~~~~~-~~~~~l~~~~ 211 (312)
T 4ery_A 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID----------------------------DDNPPVSFVKFS-PNGKYILAAT 211 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECC----------------------------SSCCCEEEEEEC-TTSSEEEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeEEec----------------------------cCCCceEEEEEC-CCCCEEEEEc
Confidence 88899999999999999999876554321 015678889985 9999999999
Q ss_pred cCCcEEEEecCCC
Q 001321 270 IDGDILLWNTSTT 282 (1100)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1100)
.||.|++||+.++
T Consensus 212 ~d~~i~iwd~~~~ 224 (312)
T 4ery_A 212 LDNTLKLWDYSKG 224 (312)
T ss_dssp TTTEEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 9999999998654
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-31 Score=307.37 Aligned_cols=205 Identities=13% Similarity=0.178 Sum_probs=156.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEeCCCce-----EEEeCCCCCCEEEEEEEeCCCEEEEEECCCc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATL------DGRIKVIGGDGIE-----GLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~------dG~I~vw~~~~~~-----~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
.-+|...|.+++|+|||++||+|+. ||.|++|+..... .....+|...|.+++|+|++ .+++++.|++
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCE
Confidence 3468889999999999999999998 7889999874432 23445788999999999995 5777889999
Q ss_pred EEEEEcCCCceee-----eeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001321 100 IQVWSLESRSLAC-----CLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 100 I~vWd~~s~~~l~-----~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
|+|||+.+++... ...|.+.|++++|+|++++|++|+.+|.|+||++.. ++.. ..+.+|.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~---~~~~~h~---------- 181 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVL---KSYNAHS---------- 181 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEEE---EEECCCS----------
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEE---EEEcCCC----------
Confidence 9999999886432 235778999999999999999999999999998764 4444 3366666
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
..|.+++|+|..+. ++++++.||.|++||+.+++....... . .....+++
T Consensus 182 --~~v~~v~~s~~~~~-~~~s~~~dg~v~~wd~~~~~~~~~~~~-------~--------------------~~~~~v~~ 231 (357)
T 4g56_B 182 --SEVNCVAACPGKDT-IFLSCGEDGRILLWDTRKPKPATRIDF-------C--------------------ASDTIPTS 231 (357)
T ss_dssp --SCEEEEEECTTCSS-CEEEEETTSCEEECCTTSSSCBCBCCC-------T--------------------TCCSCEEE
T ss_pred --CCEEEEEEccCCCc-eeeeeccCCceEEEECCCCceeeeeee-------c--------------------cccccccc
Confidence 88999999886433 489999999999999988765432211 0 11667899
Q ss_pred EEEecCC-CCEEEEEEcCCcEEEEecCCC
Q 001321 255 LCWASSS-GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 255 l~w~spd-g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
++|+ |+ +.+|++|+.|+.|++||+.++
T Consensus 232 v~~s-p~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 232 VTWH-PEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp EEEC-TTSTTEEEEEESSSCEEEEESSCG
T ss_pred hhhh-hcccceEEEeecccceeEEECCCC
Confidence 9986 76 568899999999999998644
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-30 Score=294.14 Aligned_cols=202 Identities=17% Similarity=0.248 Sum_probs=173.7
Q ss_pred cCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCC------ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEE
Q 001321 32 YGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDG------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~------~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd 104 (1100)
.||.+.|.+++|+|++ ++||+|+.||.|++|+... ..+....+|..+|.+++|+|++.+|++++.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4999999999999965 8999999999999999842 12345678999999999999999999999999999999
Q ss_pred cCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 105 LESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 105 ~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
+.+++.+..+ .|...|.+++|+|++.++++|+.||+|++|++.. ... ..+.+|. ..|.++.
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~---~~~~~h~------------~~v~~~~ 155 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCL---ATLLGHN------------DWVSQVR 155 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEE---EEECCCS------------SCEEEEE
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeE---EEEeccC------------CcEEEEE
Confidence 9999988776 6889999999999999999999999999999852 222 2355555 8899999
Q ss_pred eccCC----CCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 184 PHPNS----SGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 184 f~P~~----~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
|+|.. ++..+++++.|+.|++||+.+.+... +.+| ...|.+++|.
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h------------------------------~~~v~~~~~s 205 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH------------------------------NSNINTLTAS 205 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------CSCEEEEEEC
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC------------------------------CCcEEEEEEc
Confidence 98852 35579999999999999999987654 4455 7889999985
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCC
Q 001321 259 SSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|+|.+|++|+.||.|++||+.++
T Consensus 206 -p~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 206 -PDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp -TTSSEEEEEETTCEEEEEETTTT
T ss_pred -CCCCEEEEEeCCCeEEEEECCCC
Confidence 99999999999999999998643
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.8e-31 Score=304.86 Aligned_cols=215 Identities=15% Similarity=0.263 Sum_probs=169.0
Q ss_pred cceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCC------------------CCEEEEEEE
Q 001321 25 NLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQ------------------LPYKNLEFL 85 (1100)
Q Consensus 25 ~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~------------------~~V~~l~fs 85 (1100)
+......++|.+.|.|++|+|++++||+|+ ++.++||+....+.+ .+..|. ..|.+++|+
T Consensus 54 ~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 54 DVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC
T ss_pred CceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 333444568999999999999999999987 789999998655443 333332 249999999
Q ss_pred eCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc
Q 001321 86 QNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA 164 (1100)
Q Consensus 86 ~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~ 164 (1100)
|++.+|++++.|++|++||+.+++.+..+ .|...|++++|+|++++|++|+.||+|++|++.. +.... .+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~~~~---~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCSL---TLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEE---EEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--CeeEE---EEE-cC
Confidence 99999999999999999999999888776 6888999999999999999999999999998764 33332 122 11
Q ss_pred cccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCC
Q 001321 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 165 ~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
..|.+++|+|. ++.++++++.||.|++||+.++..+..+......
T Consensus 207 ------------~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~---------------------- 251 (393)
T 1erj_A 207 ------------DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENES---------------------- 251 (393)
T ss_dssp ------------SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC---------------------------
T ss_pred ------------CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccC----------------------
Confidence 67999999885 6788999999999999999998766543210000
Q ss_pred CCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...+...|.+++|. |+|.+|++|+.||.|++||+.+.
T Consensus 252 ~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 252 GTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp -CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC---
T ss_pred CCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence 00117789999986 99999999999999999998644
No 38
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-30 Score=293.80 Aligned_cols=320 Identities=13% Similarity=0.153 Sum_probs=232.2
Q ss_pred eeeee-ecCC-CeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 110 LACCL-KWES-NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 110 ~l~~~-~~~~-~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
++..+ .|+. .|.+++|+|++++|++|+.||+|+||+++.. ..........+|. ..|.+++|+|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~--~~~~~~~~~~~h~------------~~v~~~~~sp- 71 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQ------------RTVRKVAWSP- 71 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT--EEEEEEEECSSCS------------SCEEEEEECT-
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC--cceeeeeeccccC------------CcEEEEEECC-
Confidence 33444 5666 8999999999999999999999999998753 2221101123444 8899999988
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEE---EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
++++|++++.|+.|++||+..+.. ..+.+| ...|.+++|. |+|.+
T Consensus 72 -~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h------------------------------~~~v~~v~~s-p~~~~ 119 (345)
T 3fm0_A 72 -CGNYLASASFDATTCIWKKNQDDFECVTTLEGH------------------------------ENEVKSVAWA-PSGNL 119 (345)
T ss_dssp -TSSEEEEEETTSCEEEEEECCC-EEEEEEECCC------------------------------SSCEEEEEEC-TTSSE
T ss_pred -CCCEEEEEECCCcEEEEEccCCCeEEEEEccCC------------------------------CCCceEEEEe-CCCCE
Confidence 788899999999999999987743 334455 7889999996 99999
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEE
Q 001321 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~lt 344 (1100)
|++|+.||.|++||+.++... . .+ .
T Consensus 120 l~s~s~D~~v~iwd~~~~~~~-----------~--------------~~------------------------------~ 144 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDEY-----------E--------------CV------------------------------S 144 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCE-----------E--------------EE------------------------------E
T ss_pred EEEEECCCeEEEEECCCCCCe-----------E--------------EE------------------------------E
Confidence 999999999999998643100 0 00 0
Q ss_pred EEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCc
Q 001321 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1100)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1100)
.+.
T Consensus 145 ~~~----------------------------------------------------------------------------- 147 (345)
T 3fm0_A 145 VLN----------------------------------------------------------------------------- 147 (345)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred Eec-----------------------------------------------------------------------------
Confidence 000
Q ss_pred cCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecC
Q 001321 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1100)
Q Consensus 425 ~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~D 504 (1100)
+|...+..++++|++++|++|+.|
T Consensus 148 --------------------------------------------------------~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 148 --------------------------------------------------------SHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp --------------------------------------------------------CCCSCEEEEEECSSSSCEEEEETT
T ss_pred --------------------------------------------------------CcCCCeEEEEECCCCCEEEEEeCC
Confidence 000011122567788899999999
Q ss_pred CcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCce
Q 001321 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1100)
Q Consensus 505 GtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1100)
|+|++||...+..... ..+.+|...|++|+|+|++++||+|+.||.|+||+..........
T Consensus 172 ~~i~~w~~~~~~~~~~---------~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~---------- 232 (345)
T 3fm0_A 172 DTVKLYREEEDDWVCC---------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV---------- 232 (345)
T ss_dssp SCEEEEEEETTEEEEE---------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC----------
T ss_pred CcEEEEEecCCCEEEE---------EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc----------
Confidence 9999999877643211 346789999999999999999999999999999997543221110
Q ss_pred eeccCCCcceeEEEEee-cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc------eEEEEeecCCCCCCCeEEEEEe
Q 001321 585 HALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL------SVLFFTDDISGSSSPIISMTWT 657 (1100)
Q Consensus 585 ~~i~~~~~~~~~~~~~~-h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~------~~~~~~~~~~~~~~~V~sl~fs 657 (1100)
..........++..+.+ |...|++++|+|++..||+|+.|+.|++||.... ...+..+...+|...|.+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 00001122234555555 8899999999999999999999999999998753 2223334445799999999998
Q ss_pred ecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCcc
Q 001321 658 EFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1100)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~ 704 (1100)
+.+. .+|++|+.||+|.+|+..+++.
T Consensus 313 p~~~---------------------~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 313 PKEP---------------------GLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSST---------------------TEEEEEETTSCEEEEEECC---
T ss_pred CCCc---------------------eEEEEcCCCCcEEEEEecCCCC
Confidence 5432 3699999999999999666554
No 39
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.7e-30 Score=294.78 Aligned_cols=204 Identities=12% Similarity=0.113 Sum_probs=169.8
Q ss_pred ecCCCCCeEEEEE-----cC-CCCEEEEEECCCeEEEEeCCCc--------eEEEeCCCCCCEEEEEEEeCCCEEEEEEC
Q 001321 31 HYGIPATASILAF-----DH-IQRLLAIATLDGRIKVIGGDGI--------EGLLISPSQLPYKNLEFLQNQGFLISITN 96 (1100)
Q Consensus 31 ~~G~~~~v~~la~-----sp-~~~lLA~gs~dG~I~vw~~~~~--------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~ 96 (1100)
..||.+.|++++| ++ ++++||+|+.||.|+||+.... ....+.+|..+|.+++|+|++.+|++++.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 4599999999999 77 9999999999999999998532 23456789999999999999999999999
Q ss_pred CCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 97 DNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 97 d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
|++|++||+.+++.+..+ .|...|++++|+|+++++++|+.||+|++|++.. ...... .....|
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~-~~~~~~------------ 161 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSS-AEKENH------------ 161 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEEC-CTTTSC------------
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeee-ecccCC------------
Confidence 999999999999888776 6889999999999999999999999999999862 111110 001122
Q ss_pred CCCeEEEEeccCCC--------CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 176 HQPVVGVLPHPNSS--------GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~--------g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
...|.+++|+|... +.++++++.||.|++||........+.+|
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h----------------------------- 212 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH----------------------------- 212 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC-----------------------------
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc-----------------------------
Confidence 37899999988421 26799999999999999654444455566
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
...|.+++|. |+|.+|++|+.||.|++||+.
T Consensus 213 -~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 213 -ESNVNHLSIS-PNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp -SSCEEEEEEC-TTSSEEEEEETTCEEEEEESS
T ss_pred -cccceEEEEC-CCCCEEEEEcCCCeEEEEECC
Confidence 7889999985 999999999999999999984
No 40
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-31 Score=309.71 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=168.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
..||.+.|.+++|+|++++||+|+.||.|+||+.... .......|...|.+++|+|++.+|++++.|+.|++||+.+..
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQA 141 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence 3599999999999999999999999999999998554 445667899999999999999999999999999999997642
Q ss_pred -------eee-eeecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 110 -------LAC-CLKWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 110 -------~l~-~~~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
... ...|.+.|.++.|.|+. .++++|+.|++|++|++.. +..... +.. ..+..+...|.
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~~~~~~---~~~-------~~~~~h~~~v~ 209 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--GQRISI---FGS-------EFPSGHTADVL 209 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--CCEEEE---ECC-------CSSSSCCSCEE
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--CcEEEE---eec-------ccCCCCccCeE
Confidence 122 23677889999999975 5799999999999999875 332211 210 01223348899
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCC-EE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEA-QI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~-~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
++.|+|. ++.++++|+.|+.|++||+... +. ..+.+| ...|.+++|.
T Consensus 210 ~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h------------------------------~~~v~~v~~~ 258 (380)
T 3iz6_a 210 SLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGH------------------------------EGDINSVKFF 258 (380)
T ss_dssp EEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCC------------------------------SSCCCEEEEC
T ss_pred EEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCc------------------------------CCCeEEEEEe
Confidence 9999875 5778999999999999999743 33 445556 7889999986
Q ss_pred cCCCCEEEEEEcCCcEEEEecCCC
Q 001321 259 SSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|+|.+|++|+.||+|++||+.++
T Consensus 259 -p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 259 -PDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp -TTSSEEEEECSSSCEEEEETTTT
T ss_pred -cCCCeEEEEcCCCeEEEEECCCC
Confidence 99999999999999999998754
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-30 Score=304.63 Aligned_cols=352 Identities=12% Similarity=0.110 Sum_probs=257.4
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~ 157 (1100)
.++.++|+|++.+|++++.|+.|++||+.+++....+.....+.+..++++++++++|+.+|.|+||++.. +....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~-- 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQRE-- 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEEEE--
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC--cceee--
Confidence 45689999999999999999999999999987766665555566668899999999999999999999763 34432
Q ss_pred eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCC
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDS 236 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~ 236 (1100)
.+.+|. ..|.+++|+| ++.+|++++.|+.|++||+.+++... +.+|
T Consensus 134 -~~~~h~------------~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h------------------ 180 (420)
T 3vl1_A 134 -IDQAHV------------SEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGH------------------ 180 (420)
T ss_dssp -ETTSSS------------SCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECC------------------
T ss_pred -eccccc------------CccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCC------------------
Confidence 245555 8999999988 68889999999999999999876543 4455
Q ss_pred ccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEec
Q 001321 237 TFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWS 316 (1100)
Q Consensus 237 ~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~ 316 (1100)
...|.+++|. |++.+|++++.||.|++||+.+++. +..+.....
T Consensus 181 ------------~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~-----------~~~~~~~~~------------ 224 (420)
T 3vl1_A 181 ------------RATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTT-----------IHTFNRKEN------------ 224 (420)
T ss_dssp ------------SSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEE-----------EEEECBTTB------------
T ss_pred ------------CCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCce-----------eEEeecCCC------------
Confidence 7889999996 9999999999999999999875511 110000000
Q ss_pred ccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEec
Q 001321 317 TNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTS 396 (1100)
Q Consensus 317 ~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~ 396 (1100)
....+..+.+.+...
T Consensus 225 --------------------------------------------------~~~~v~~~~~~~~~~--------------- 239 (420)
T 3vl1_A 225 --------------------------------------------------PHDGVNSIALFVGTD--------------- 239 (420)
T ss_dssp --------------------------------------------------TTCCEEEEEEEECCC---------------
T ss_pred --------------------------------------------------CCCCccEEEEecCCc---------------
Confidence 000111111111100
Q ss_pred CCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccc
Q 001321 397 PGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKW 476 (1100)
Q Consensus 397 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1100)
..
T Consensus 240 ---------------------------------------------------~~--------------------------- 241 (420)
T 3vl1_A 240 ---------------------------------------------------RQ--------------------------- 241 (420)
T ss_dssp ---------------------------------------------------SS---------------------------
T ss_pred ---------------------------------------------------ce---------------------------
Confidence 00
Q ss_pred cccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCC-eEEEEe
Q 001321 477 PLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGN 555 (1100)
Q Consensus 477 pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~-~Lasg~ 555 (1100)
....+...+..++++++++++++|+.||.|++||+..+.... ....+|...|++++|+|++. +|++|+
T Consensus 242 -~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~g~ 310 (420)
T 3vl1_A 242 -LHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI----------QLPSKFTCSCNSLTVDGNNANYIYAGY 310 (420)
T ss_dssp -CGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE----------EECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred -eeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE----------EcccccCCCceeEEEeCCCCCEEEEEe
Confidence 000011122445899999999999999999999998776431 12346888999999999999 999999
Q ss_pred cCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEee-cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCC
Q 001321 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 556 ~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~ 634 (1100)
.||.|++|++..... ++..+.. |..+|+++.++ ++++|++|+.||.|++||+..
T Consensus 311 ~dg~i~vwd~~~~~~------------------------~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 311 ENGMLAQWDLRSPEC------------------------PVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp TTSEEEEEETTCTTS------------------------CSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECC
T ss_pred CCCeEEEEEcCCCcC------------------------chhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccC
Confidence 999999999987521 2334455 77888888654 778999999999999999886
Q ss_pred c---eEEEEe---ecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCC
Q 001321 635 L---SVLFFT---DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGS 700 (1100)
Q Consensus 635 ~---~~~~~~---~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~ 700 (1100)
+ ..+... ....+|...|.+++|++.+.. ...|++.+++|.+.+|+.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-------------------~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 366 PESERPAIEFETPTFLVSNDDAVSQFCYVSDDES-------------------NGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp TTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS-------------------SCEEEEEETTTEEEEEESC
T ss_pred CCCCccceeccCccEEccCCcceEEEEEccCCCC-------------------cceEEEEcCCceEEEEecc
Confidence 3 111100 112358899999999976542 2347777889999999954
No 42
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-30 Score=291.75 Aligned_cols=202 Identities=13% Similarity=0.177 Sum_probs=161.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--eEE-Ee-CC-CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGL-LI-SP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--~~~-~~-~~-h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~ 106 (1100)
.||.+.|.+++|+|+ +||+|+.||.|+||+.... ... .. .. |..+|.+++|+|++.+|++++.|++|++||+.
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 489999999999998 9999999999999999653 222 22 34 99999999999999999999999999999995
Q ss_pred C-------Cceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 107 S-------RSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 107 s-------~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
. .+.+..+ .|...|++++|+|++++|++|+.||+|+||+++........ ...+.+|. ..
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~-~~~~~~h~------------~~ 155 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC-ISVLQEHS------------QD 155 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE-EEEECCCS------------SC
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE-EEEeccCC------------Cc
Confidence 3 2344444 68889999999999999999999999999998542221111 12355555 88
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE--E-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~--~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
|.+++|+| ++.+|++++.|++|++||+.++. . ..+.+| ...|.++
T Consensus 156 v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h------------------------------~~~v~~~ 203 (330)
T 2hes_X 156 VKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGH------------------------------EGTVWSS 203 (330)
T ss_dssp EEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEE
T ss_pred eEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC------------------------------CCcEEEE
Confidence 99999998 67889999999999999998763 3 334455 7889999
Q ss_pred EEecCC--CCEEEEEEcCCcEEEEecCC
Q 001321 256 CWASSS--GSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 256 ~w~spd--g~~l~sg~~DG~I~lWd~~~ 281 (1100)
+|. |+ +..|++|+.||+|++||+..
T Consensus 204 ~~~-~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 204 DFD-KTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEC-CSSSSCEEEEEETTSCEEEEEEEE
T ss_pred Eec-CCCCeeEEEEEeCCCeEEEEEecC
Confidence 986 88 77899999999999999853
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=9.1e-31 Score=296.34 Aligned_cols=323 Identities=15% Similarity=0.155 Sum_probs=252.3
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
|..+|.+++|+|||.+++++..++.+.+|+.... +.+....|...|++++|+|+++++++++ +|.|++|+++......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 4568999999999999998887777777765543 4556668899999999999999999999 9999999987633221
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE--E-EEecCCcccccccccCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI--I-FVGGGKDLQLKDGVVDS 230 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~--~-~~~~~~~~~~~~~l~~~ 230 (1100)
....+....+. ..|.+++|+| +++++++++.||.|++||+.+++. . ...+|
T Consensus 87 ~~~~~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------------ 140 (337)
T 1gxr_A 87 PVSQLDCLNRD------------NYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS------------ 140 (337)
T ss_dssp CSEEEECSCTT------------SBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECS------------
T ss_pred eeecccccCCC------------CcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccC------------
Confidence 11011112333 7899999988 688899999999999999998763 2 23333
Q ss_pred CCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcce
Q 001321 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1100)
Q Consensus 231 ~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 310 (1100)
...|.+++|. |++.++++++.||.|++||+.+++. .
T Consensus 141 ------------------~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~-----------~-------------- 176 (337)
T 1gxr_A 141 ------------------APACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTL-----------V-------------- 176 (337)
T ss_dssp ------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEE-----------E--------------
T ss_pred ------------------CCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCce-----------e--------------
Confidence 6789999986 9999999999999999999864310 0
Q ss_pred EEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcce
Q 001321 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1100)
Q Consensus 311 ~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~ 390 (1100)
..+ . +
T Consensus 177 ~~~---------~---------~--------------------------------------------------------- 181 (337)
T 1gxr_A 177 RQF---------Q---------G--------------------------------------------------------- 181 (337)
T ss_dssp EEE---------C---------C---------------------------------------------------------
T ss_pred eee---------e---------c---------------------------------------------------------
Confidence 000 0 0
Q ss_pred EEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcc
Q 001321 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1100)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1100)
T Consensus 182 -------------------------------------------------------------------------------- 181 (337)
T 1gxr_A 182 -------------------------------------------------------------------------------- 181 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCe
Q 001321 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1100)
Q Consensus 471 ~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~ 550 (1100)
+...+..+.++|+++++++++.||.|++||+..+.... ...|...|.+++|+|++++
T Consensus 182 -----------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~------------~~~~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 182 -----------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ------------QHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp -----------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE------------EEECSSCEEEEEECTTSSE
T ss_pred -----------ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe------------eecCCCceEEEEECCCCCE
Confidence 00000112466777899999999999999998876441 1235578999999999999
Q ss_pred EEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEE
Q 001321 551 LAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVL 630 (1100)
Q Consensus 551 Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vw 630 (1100)
|++++.+|.|++|++... ....+..|.++|++++|+|++++|++|+.||.|++|
T Consensus 239 l~~~~~~~~i~~~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKP--------------------------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEEEETTSCEEEEETTSS--------------------------CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEEEcCCCcEEEEECCCC--------------------------CeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEE
Confidence 999999999999999875 134567899999999999999999999999999999
Q ss_pred ecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 631 DMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 631 D~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
|+.+++.++. ..|...|.++.|++.+ ..|++++.||.|.+||
T Consensus 293 ~~~~~~~~~~----~~~~~~v~~~~~s~~~----------------------~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 293 RTPYGASIFQ----SKESSSVLSCDISVDD----------------------KYIVTGSGDKKATVYE 334 (337)
T ss_dssp ETTTCCEEEE----EECSSCEEEEEECTTS----------------------CEEEEEETTSCEEEEE
T ss_pred ECCCCeEEEE----ecCCCcEEEEEECCCC----------------------CEEEEecCCCeEEEEE
Confidence 9999887733 2478899999998554 4599999999999999
No 44
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=2.3e-29 Score=284.02 Aligned_cols=297 Identities=15% Similarity=0.214 Sum_probs=225.7
Q ss_pred ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|.+.|++++|+|++ ++|++|+.||+|++|++.............+.+|. ..|.+++|+| ++.++
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~s~--dg~~l 80 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------------HIVQDCTLTA--DGAYA 80 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCc------------ccEEEEEECC--CCCEE
Confidence 788999999999965 89999999999999999754433322223466666 8999999987 78889
Q ss_pred EEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++++.|++|++||+.+++... +.+| ...|.+++|. |++.+|++|+.||
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h------------------------------~~~v~~~~~~-~~~~~l~s~s~D~ 129 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGH------------------------------KSDVMSVDID-KKASMIISGSRDK 129 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-TTSCEEEEEETTS
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccC------------------------------CCcEEEEEEc-CCCCEEEEEeCCC
Confidence 999999999999999998754 4566 7889999986 9999999999999
Q ss_pred cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
.|++||+... .+. .+ . +
T Consensus 130 ~i~vwd~~~~------------~~~--------------~~---------~---------~------------------- 146 (319)
T 3frx_A 130 TIKVWTIKGQ------------CLA--------------TL---------L---------G------------------- 146 (319)
T ss_dssp CEEEEETTSC------------EEE--------------EE---------C---------C-------------------
T ss_pred eEEEEECCCC------------eEE--------------EE---------e---------c-------------------
Confidence 9999997421 000 00 0 0
Q ss_pred ccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccccc
Q 001321 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1100)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 432 (1100)
....+..+.+.|..
T Consensus 147 --------------h~~~v~~~~~~~~~---------------------------------------------------- 160 (319)
T 3frx_A 147 --------------HNDWVSQVRVVPNE---------------------------------------------------- 160 (319)
T ss_dssp --------------CSSCEEEEEECCC-----------------------------------------------------
T ss_pred --------------cCCcEEEEEEccCC----------------------------------------------------
Confidence 00001111111110
Q ss_pred CCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeC
Q 001321 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDA 512 (1100)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~ 512 (1100)
...+++.++++|+.||+|++||+
T Consensus 161 ---------------------------------------------------------~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 161 ---------------------------------------------------------KADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp --------------------------------------------------------------CCEEEEEETTSCEEEEET
T ss_pred ---------------------------------------------------------CCCCCccEEEEEeCCCEEEEEEC
Confidence 11234558999999999999999
Q ss_pred CCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCc
Q 001321 513 TYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKI 592 (1100)
Q Consensus 513 ~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 592 (1100)
....+. ..+.+|...|++++|+|++++|++|+.||.|+||++...
T Consensus 184 ~~~~~~-----------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~------------------------ 228 (319)
T 3frx_A 184 NQFQIE-----------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------------------------ 228 (319)
T ss_dssp TTTEEE-----------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------------------------
T ss_pred Ccchhh-----------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------------------
Confidence 877644 456789999999999999999999999999999999875
Q ss_pred ceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecC-----CCCCCCeEEEEEeecccCccccC
Q 001321 593 SLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDI-----SGSSSPIISMTWTEFKNTHSLAK 667 (1100)
Q Consensus 593 ~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~-----~~~~~~V~sl~fs~~~~~~~~~~ 667 (1100)
+++..+. +..+|.+++|+|++.+|++++.++ +++|++.....+...... ..|...|.+++|++++.
T Consensus 229 -~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~------ 299 (319)
T 3frx_A 229 -KAMYTLS-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ------ 299 (319)
T ss_dssp -EEEEEEE-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS------
T ss_pred -cEEEEec-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC------
Confidence 1333443 457899999999999999998766 999999987766443321 12567899999996654
Q ss_pred CCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCC
Q 001321 668 NPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1100)
Q Consensus 668 ~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g 702 (1100)
+|++|+.||.|++||..++
T Consensus 300 ----------------~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 ----------------TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ----------------EEEEEETTSCEEEEEEEEC
T ss_pred ----------------EEEEeecCceEEEEEEeec
Confidence 4999999999999996554
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.7e-32 Score=318.17 Aligned_cols=340 Identities=14% Similarity=0.221 Sum_probs=253.1
Q ss_pred CCEEEEEEEeCCC-EEEEE----------ECCCcEEEEEcCCCc---eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEE
Q 001321 77 LPYKNLEFLQNQG-FLISI----------TNDNEIQVWSLESRS---LACCLKWESNITAFSVISGSHFMYIGDENGLMS 142 (1100)
Q Consensus 77 ~~V~~l~fs~d~~-~Lls~----------s~d~~I~vWd~~s~~---~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~ 142 (1100)
.+|.+++|+|++. +|+++ +.|+.|++||+.++. .+..+.+...|++++|+|++.+|++|+.+|.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 4688999999987 88888 789999999999885 556667889999999999999999999999999
Q ss_pred EEEEecCC--CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE------EEE
Q 001321 143 VIKYDADE--GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ------IIF 214 (1100)
Q Consensus 143 Iw~~d~~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~------~~~ 214 (1100)
+|+++... .... ..+.+|. ..|.+++|+|. .+.+|++++.||.|++||+.+++ ...
T Consensus 93 vw~~~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 156 (416)
T 2pm9_A 93 LYSTNEANNAINSM---ARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPL 156 (416)
T ss_dssp EECCSSTTSCCCEE---EECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCB
T ss_pred Eeecccccccccch---hhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCcccccccccc
Confidence 99988621 1122 3355555 88999999884 26779999999999999998865 111
Q ss_pred EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC-CCEEEEEEcCCcEEEEecCCCCCCCCcccCCC
Q 001321 215 VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS-GSILAVGYIDGDILLWNTSTTASTKGQQTGSR 293 (1100)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd-g~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~ 293 (1100)
.... ...+...|.+++|. |+ +..+++++.||.|++||+.++..
T Consensus 157 ~~~~--------------------------~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~--------- 200 (416)
T 2pm9_A 157 TPGQ--------------------------SMSSVDEVISLAWN-QSLAHVFASAGSSNFASIWDLKAKKE--------- 200 (416)
T ss_dssp CCCC--------------------------SCCSSCCCCEEEEC-SSCTTEEEEESSSSCEEEEETTTTEE---------
T ss_pred cccc--------------------------ccCCCCCeeEEEeC-CCCCcEEEEEcCCCCEEEEECCCCCc---------
Confidence 1100 00126789999996 88 78999999999999999865410
Q ss_pred CcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCccee
Q 001321 294 NNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFAD 373 (1100)
Q Consensus 294 ~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d 373 (1100)
+. .+ . ...
T Consensus 201 --~~--------------~~---------------------------------~--~~~--------------------- 208 (416)
T 2pm9_A 201 --VI--------------HL---------------------------------S--YTS--------------------- 208 (416)
T ss_dssp --EE--------------EE---------------------------------C--CCC---------------------
T ss_pred --ce--------------EE---------------------------------e--ccc---------------------
Confidence 00 00 0 000
Q ss_pred EEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchh
Q 001321 374 MILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSK 453 (1100)
Q Consensus 374 ~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~ 453 (1100)
T Consensus 209 -------------------------------------------------------------------------------- 208 (416)
T 2pm9_A 209 -------------------------------------------------------------------------------- 208 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCC-cEEEEEecCC---cEEEeeCCCCc-eeEEeeecccee
Q 001321 454 GLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD-RVYLAGYHDG---SVRIWDATYPV-FKLICALDAEVQ 528 (1100)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~-~~l~Tg~~DG---tIriWd~~~~~-l~~~~~l~~~~~ 528 (1100)
...++...+..++++|++ .++++++.|| .|++||+..+. ..
T Consensus 209 ------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---------- 254 (416)
T 2pm9_A 209 ------------------------PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---------- 254 (416)
T ss_dssp ------------------------CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS----------
T ss_pred ------------------------cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc----------
Confidence 000000011222455664 5899999999 99999998753 22
Q ss_pred eeeec-CCCCCeeEEEEee-CCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCe
Q 001321 529 GIEVA-GSRAPVSTLSFCF-INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPV 606 (1100)
Q Consensus 529 ~~~l~-~h~~~Vt~lafsp-d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~V 606 (1100)
..+. +|...|++++|+| ++.+|++++.||.|++|++... .++..+..|.++|
T Consensus 255 -~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------------------------~~~~~~~~~~~~v 308 (416)
T 2pm9_A 255 -QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------------------------EQLSQFPARGNWC 308 (416)
T ss_dssp -BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-------------------------CEEEEEECSSSCC
T ss_pred -EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-------------------------ccceeecCCCCce
Confidence 2355 7889999999999 9999999999999999998774 2566778999999
Q ss_pred EEEEEcCCC-CEEEEEeCCceEEEEecCCceEEEEe----------------e----------------cCCCCCCCeEE
Q 001321 607 RALQFTSSG-AKLAVGFECGRVAVLDMNLLSVLFFT----------------D----------------DISGSSSPIIS 653 (1100)
Q Consensus 607 tsLafSp~g-~~LavGs~dG~V~vwD~~~~~~~~~~----------------~----------------~~~~~~~~V~s 653 (1100)
++++|+|++ .+|++|+.||.|+|||+.+....... + ....|..+|.+
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPA 388 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccc
Confidence 999999999 89999999999999999876532100 0 00014455556
Q ss_pred EEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCC
Q 001321 654 MTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1100)
Q Consensus 654 l~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g 702 (1100)
++|+ ++..+|++|+.||.|.+|+..++
T Consensus 389 ~~~s----------------------~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 389 AHWA----------------------FGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CEEE----------------------TTTEEECBCTTSSCBCCBCCCCC
T ss_pred eEEe----------------------eCCeEEEEeCCCCeEEEEEeccC
Confidence 6665 44567999999999999997654
No 46
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.9e-30 Score=289.75 Aligned_cols=161 Identities=17% Similarity=0.271 Sum_probs=128.5
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC--ceeeee--e-cCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCL--K-WESNITAFSVISGSHFMYIGDENGLMSVI 144 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~--~~l~~~--~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw 144 (1100)
..+.+|..+|.+++|+++ +|++++.|++|++||+.++ .....+ . |.+.|++++|+|++++|++|+.||+|+||
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 345689999999999988 8999999999999999875 344444 2 78899999999999999999999999999
Q ss_pred EEecCC-----CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC----EEE-E
Q 001321 145 KYDADE-----GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA----QII-F 214 (1100)
Q Consensus 145 ~~d~~~-----~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~----~~~-~ 214 (1100)
+++... .... ..+.+|. ..|.+++|+| ++++|++++.|+.|++||+... +.+ .
T Consensus 86 ~~~~~~~~~~~~~~~---~~~~~h~------------~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 86 AKEESADRTFEMDLL---AIIEGHE------------NEVKGVAWSN--DGYYLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp EC-------CCCEEE---EEEC----------------CEEEEEECT--TSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred EcccCcCccccceeE---EEEcCCC------------CcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 985321 1122 3355665 8899999988 6888999999999999999532 333 3
Q ss_pred EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 215 VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+.+| ...|.+++|. |++.+|++|+.||+|++||..
T Consensus 149 ~~~h------------------------------~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~ 183 (330)
T 2hes_X 149 LQEH------------------------------SQDVKHVIWH-PSEALLASSSYDDTVRIWKDY 183 (330)
T ss_dssp ECCC------------------------------SSCEEEEEEC-SSSSEEEEEETTSCEEEEEEE
T ss_pred eccC------------------------------CCceEEEEEC-CCCCEEEEEcCCCeEEEEECC
Confidence 4445 7789999996 999999999999999999874
No 47
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.4e-29 Score=287.42 Aligned_cols=214 Identities=15% Similarity=0.178 Sum_probs=176.4
Q ss_pred cccccceeeeecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCc------eEEEeCCCCCCEEEEEEEeCCCEEEE
Q 001321 21 AADLNLRIAVHYGIPATASILAFDHI-QRLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLIS 93 (1100)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~Lls 93 (1100)
++.+.++-+. .||.+.|++++|+|+ +++||+|+.||.|+||++... ....+.+|..+|.+++|+|++.+|++
T Consensus 25 ~~~~~l~~tL-~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 25 TEQMTLRGTL-KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp -CEEEEEEEE-CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEEE-CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 3444454443 499999999999998 689999999999999998543 23356789999999999999999999
Q ss_pred EECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 94 ITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 94 ~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
++.|+.|++|+.......... .+...+.++.+++.+.++++|+.||.+++|+.... ... .....+|.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~--~~~~~~~~-------- 171 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKY--TVQDESHS-------- 171 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEE--EECSSSCS--------
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceE--EEEecccc--------
Confidence 999999999999998877666 56678999999999999999999999999986531 111 12233333
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~ 251 (1100)
..|..++|++......+++++.|+.|++||+.+++.... .+| ...
T Consensus 172 ----~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h------------------------------~~~ 217 (340)
T 4aow_A 172 ----EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH------------------------------TGY 217 (340)
T ss_dssp ----SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSC
T ss_pred ----CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC------------------------------CCc
Confidence 789999998876677788999999999999999987654 345 788
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 252 ISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 252 V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|++++|. |++.+|++|+.||.|++||+.+.
T Consensus 218 v~~~~~s-~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 218 LNTVTVS-PDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEEEC-TTSSEEEEEETTCEEEEEETTTT
T ss_pred EEEEEEC-CCCCEEEEEeCCCeEEEEEeccC
Confidence 9999985 99999999999999999998643
No 48
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.98 E-value=7.1e-30 Score=291.34 Aligned_cols=302 Identities=16% Similarity=0.176 Sum_probs=219.6
Q ss_pred EEeCCCCCCEEEEEE-----Ee-CCCEEEEEECCCcEEEEEcCCCc-------eeeee-ecCCCeEEEEEecCCCEEEEE
Q 001321 70 LLISPSQLPYKNLEF-----LQ-NQGFLISITNDNEIQVWSLESRS-------LACCL-KWESNITAFSVISGSHFMYIG 135 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~f-----s~-d~~~Lls~s~d~~I~vWd~~s~~-------~l~~~-~~~~~Vt~~~~s~~~~~l~~G 135 (1100)
..+.+|..+|.+++| ++ ++.+|++++.|++|++||+..+. ....+ .|...|++++|+|++.++++|
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~ 94 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS 94 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence 356789999999999 66 88999999999999999997542 33333 688899999999999999999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE
Q 001321 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~ 215 (1100)
+.||+|++|++.. ++.. ..+.+|. ..|.+++|+| ++.+|++++.|+.|++||+........
T Consensus 95 s~D~~v~lwd~~~--~~~~---~~~~~h~------------~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~~~~~~ 155 (343)
T 2xzm_R 95 SWDKTLRLWDLRT--GTTY---KRFVGHQ------------SEVYSVAFSP--DNRQILSAGAEREIKLWNILGECKFSS 155 (343)
T ss_dssp ETTSEEEEEETTS--SCEE---EEEECCC------------SCEEEEEECS--STTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred cCCCcEEEEECCC--CcEE---EEEcCCC------------CcEEEEEECC--CCCEEEEEcCCCEEEEEeccCCceeee
Confidence 9999999999875 3333 2366666 8999999988 688899999999999999985544332
Q ss_pred ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC----------CEEEEEEcCCcEEEEecCCCCCC
Q 001321 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG----------SILAVGYIDGDILLWNTSTTAST 285 (1100)
Q Consensus 216 ~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg----------~~l~sg~~DG~I~lWd~~~~~~~ 285 (1100)
... . .+...|.+++|. |++ .++++++.||.|++||....
T Consensus 156 ~~~-------~--------------------~~~~~v~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 204 (343)
T 2xzm_R 156 AEK-------E--------------------NHSDWVSCVRYS-PIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--- 204 (343)
T ss_dssp CTT-------T--------------------SCSSCEEEEEEC-CCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE---
T ss_pred ecc-------c--------------------CCCceeeeeeec-cccccccccCCCCCEEEEEcCCCEEEEEcCCCc---
Confidence 210 0 116779999985 876 78999999999999984210
Q ss_pred CCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeee
Q 001321 286 KGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDI 365 (1100)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l 365 (1100)
.. ..+ .
T Consensus 205 ----------~~-------------~~~-------------------~-------------------------------- 210 (343)
T 2xzm_R 205 ----------IR-------------YTF-------------------K-------------------------------- 210 (343)
T ss_dssp ----------EE-------------EEE-------------------E--------------------------------
T ss_pred ----------ee-------------EEE-------------------c--------------------------------
Confidence 00 000 0
Q ss_pred cCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEec
Q 001321 366 TLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLL 445 (1100)
Q Consensus 366 ~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~ 445 (1100)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 2xzm_R 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCc-eeEEeeec
Q 001321 446 PFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPV-FKLICALD 524 (1100)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~-l~~~~~l~ 524 (1100)
+|...+..++++|++++|++|+.||+|+|||+.... ..
T Consensus 211 -----------------------------------~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~------ 249 (343)
T 2xzm_R 211 -----------------------------------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ------ 249 (343)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS------
T ss_pred -----------------------------------CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc------
Confidence 000011223577888999999999999999984332 11
Q ss_pred cceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCc
Q 001321 525 AEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 604 (1100)
Q Consensus 525 ~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~ 604 (1100)
..+ .+...|++++|+|++.+|++| .|+.|++|++..........+.... +. ......+|..
T Consensus 250 -----~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~ 310 (343)
T 2xzm_R 250 -----REF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP------IT------KAEGQKGKNP 310 (343)
T ss_dssp -----EEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS------GG------GBTTBCCSCC
T ss_pred -----eee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc------ch------hhhhhcCCCC
Confidence 111 234579999999999888755 5778999999765321100000000 00 0001136888
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 605 PVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 605 ~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
.|++++|+|+|++|++|+.||+|++||+.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 9999999999999999999999999998754
No 49
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=1.5e-29 Score=284.15 Aligned_cols=290 Identities=17% Similarity=0.262 Sum_probs=230.7
Q ss_pred eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEE
Q 001321 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~ 146 (1100)
......+|..+|++++|+|++.+|++++.|+.|++||+.+++....+ .|...|++++|+|+++++++|+.||.|++|++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 34456789999999999999999999999999999999999887776 67789999999999999999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccc
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKD 225 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~ 225 (1100)
+. ++.. ..+.+|. ..|.++.|+| ++.++++++.||.|++||+.+++....+ .|
T Consensus 95 ~~--~~~~---~~~~~~~------------~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------- 148 (312)
T 4ery_A 95 SS--GKCL---KTLKGHS------------NYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH------- 148 (312)
T ss_dssp TT--CCEE---EEEECCS------------SCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCC-------
T ss_pred CC--CcEE---EEEcCCC------------CCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCC-------
Confidence 75 3333 2355555 8899999988 6888999999999999999988765443 34
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
...|.+++|. |++.++++++.||.|++||+.++.. +.
T Consensus 149 -----------------------~~~v~~~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~-------- 185 (312)
T 4ery_A 149 -----------------------SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC-----------LK-------- 185 (312)
T ss_dssp -----------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCE-----------EE--------
T ss_pred -----------------------CCcEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCce-----------ee--------
Confidence 6789999985 9999999999999999999864410 00
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
.+ .. .
T Consensus 186 ------~~---------~~-----------~------------------------------------------------- 190 (312)
T 4ery_A 186 ------TL---------ID-----------D------------------------------------------------- 190 (312)
T ss_dssp ------EE---------CC-----------S-------------------------------------------------
T ss_pred ------EE---------ec-----------c-------------------------------------------------
Confidence 00 00 0
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
+..
T Consensus 191 -----------------------------------------------~~~------------------------------ 193 (312)
T 4ery_A 191 -----------------------------------------------DNP------------------------------ 193 (312)
T ss_dssp -----------------------------------------------SCC------------------------------
T ss_pred -----------------------------------------------CCC------------------------------
Confidence 000
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeE--EE
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVST--LS 543 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~--la 543 (1100)
.+..++++|+++++++++.||.|++||+..+.+. ..+.+|...+.+ ..
T Consensus 194 -------------------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 194 -------------------PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-----------KTYTGHKNEKYCIFAN 243 (312)
T ss_dssp -------------------CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-----------EEECSSCCSSSCCCEE
T ss_pred -------------------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----------EEEEecCCceEEEEEE
Confidence 0011246778889999999999999999887654 223444433322 23
Q ss_pred Ee-eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe
Q 001321 544 FC-FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 544 fs-pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs 622 (1100)
|+ +++.+|++|+.||.|++|++... .++..+.+|...|.+++|+|++.+|++++
T Consensus 244 ~~~~~~~~l~sg~~dg~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDNLVYIWNLQTK-------------------------EIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EECSSSCEEEECCTTSCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEeCCCcEEEEECCCCEEEEEECCCc-------------------------hhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 44 67889999999999999998764 24667889999999999999999999987
Q ss_pred --CCceEEEEecC
Q 001321 623 --ECGRVAVLDMN 633 (1100)
Q Consensus 623 --~dG~V~vwD~~ 633 (1100)
.||+|++|+.+
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999864
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=304.34 Aligned_cols=204 Identities=13% Similarity=0.212 Sum_probs=155.1
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcCC---Cc---eeee
Q 001321 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES---RS---LACC 113 (1100)
Q Consensus 42 a~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s---~~---~l~~ 113 (1100)
.|+|+++.++++. .|+..+..+..+ .+|..+|++++|+| ++.+|++++.|++|+|||+.+ +. ....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred hcCCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 4788888888765 488777666666 78899999999999 999999999999999999977 43 3444
Q ss_pred eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC-CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD-EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 114 ~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~-~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
+.|.+.|++++|+|+++++++|+.||.|++|+++.. .+..... ...+........+......+.++.+.+..++.+
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF---LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE---EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec---cccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 478899999999999999999999999999999621 1222211 111111111111111347788888655557888
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
+++++.||.|++||+.+++.+..+.. ..+ ...|++++|. |++.+|++|+.||
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~h--------------------~~~v~~~~~s-~~~~~l~s~~~dg 236 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIEN-------SPR--------------------HGAVSSICID-EECCVLILGTTRG 236 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-------CGG--------------------GCCEEEEEEC-TTSCEEEEEETTS
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEcc-------CCC--------------------CCceEEEEEC-CCCCEEEEEcCCC
Confidence 99999999999999999877654421 001 6789999985 9999999999999
Q ss_pred cEEEEecCCC
Q 001321 273 DILLWNTSTT 282 (1100)
Q Consensus 273 ~I~lWd~~~~ 282 (1100)
.|++||+.++
T Consensus 237 ~i~iwd~~~~ 246 (437)
T 3gre_A 237 IIDIWDIRFN 246 (437)
T ss_dssp CEEEEETTTT
T ss_pred eEEEEEcCCc
Confidence 9999998643
No 51
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=280.74 Aligned_cols=220 Identities=11% Similarity=0.099 Sum_probs=179.2
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEE
Q 001321 26 LRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd 104 (1100)
.+.....||.+.|++++|+|++++||+|+.||.|+||+.... .......|..+|.+++|+|++.+|++++.|+.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 444556799999999999999999999999999999998554 4456677999999999999999999999999999999
Q ss_pred cCCCceeeeeecCCCeEEEEEecCCCEEEEEeCC-----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDEN-----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 105 ~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d-----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
+.+++.+..+.+...|.+++|+|++.++++++.+ |.|++|++.......... ........... .......+
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~ 178 (369)
T 3zwl_B 103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT--KVSEEPIHKII--THEGLDAA 178 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE--EECSSCSEEEE--CCTTCCCE
T ss_pred CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec--ccccceeeecc--CCcCccce
Confidence 9999999999999999999999999999999999 999999998643222110 00000000000 00111389
Q ss_pred EEEEeccCCCCCEEEEEEcCCEEEEEEccC-CEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 180 VGVLPHPNSSGNRVLIAYENALVILWDVSE-AQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~-~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
.+++|+| ++.++++++.+|.|++||+.+ .+... ...| ...|.+++|
T Consensus 179 ~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------~~~v~~~~~ 226 (369)
T 3zwl_B 179 TVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH------------------------------EKSISDMQF 226 (369)
T ss_dssp EEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECC------------------------------SSCEEEEEE
T ss_pred eEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecC------------------------------CCceeEEEE
Confidence 9999988 688899999999999999998 55544 3344 778999998
Q ss_pred ecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
. |++.+|++++.||.|++||+.++
T Consensus 227 ~-~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 227 S-PDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp C-TTSSEEEEEETTSEEEEEETTTC
T ss_pred C-CCCCEEEEecCCceEEEEECCCC
Confidence 6 99999999999999999998755
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.3e-28 Score=291.53 Aligned_cols=313 Identities=18% Similarity=0.266 Sum_probs=246.0
Q ss_pred ecCCCCCe-EEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 31 HYGIPATA-SILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 31 ~~G~~~~v-~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
..||.+.+ +|+++ ++++||+|+.||.|+||+....+ .....+|..+|.+++|+ +.+|++++.|++|++||+.++
T Consensus 114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 34787765 55555 58999999999999999996544 44667899999999998 468999999999999999999
Q ss_pred ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+.+..+ .|...|++++++ ++++++|+.||.|++|++.. ++.. ..+.+|. ..|.++.|
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~~~---~~~~~~~------------~~v~~~~~--- 247 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--GQCL---HVLMGHV------------AAVRCVQY--- 247 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--CCEE---EEEECCS------------SCEEEEEE---
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC--CcEE---EEEcCCc------------ccEEEEEE---
Confidence 888777 678899999996 57899999999999999875 3333 2355555 88999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
++.++++++.||.|++||+.+++.+..+ +| ...|.+++| ++.+++
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~---~~~~l~ 293 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGH------------------------------TNRVYSLQF---DGIHVV 293 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECCC------------------------------SSCEEEEEE---CSSEEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecCC------------------------------CCceEEEEE---CCCEEE
Confidence 4566999999999999999998876543 34 778999996 689999
Q ss_pred EEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEE
Q 001321 267 VGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVL 346 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl 346 (1100)
+++.||.|++||+.+++. +. .+ . +
T Consensus 294 ~~~~d~~i~i~d~~~~~~-----------~~--------------~~---------~---------~------------- 317 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETGNC-----------IH--------------TL---------T---------G------------- 317 (445)
T ss_dssp EEETTSCEEEEETTTCCE-----------EE--------------EE---------C---------C-------------
T ss_pred EEeCCCeEEEEECCCCCE-----------EE--------------EE---------c---------C-------------
Confidence 999999999999865410 00 00 0 0
Q ss_pred EcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccC
Q 001321 347 SLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEF 426 (1100)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 426 (1100)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCc
Q 001321 427 PGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGS 506 (1100)
Q Consensus 427 p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGt 506 (1100)
+...+. .+..+++++++|+.||.
T Consensus 318 ------~~~~v~---------------------------------------------------~~~~~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 318 ------HQSLTS---------------------------------------------------GMELKDNILVSGNADST 340 (445)
T ss_dssp ------CCSCEE---------------------------------------------------EEEEETTEEEEEETTSC
T ss_pred ------CcccEE---------------------------------------------------EEEEeCCEEEEEeCCCe
Confidence 000000 01123348999999999
Q ss_pred EEEeeCCCCceeEEeeeccceeeeeec---CCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCc
Q 001321 507 VRIWDATYPVFKLICALDAEVQGIEVA---GSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 583 (1100)
Q Consensus 507 IriWd~~~~~l~~~~~l~~~~~~~~l~---~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~ 583 (1100)
|++||+..+.+. ..+. .|..+|++++|+ +.+|++|+.||.|++|++.+..
T Consensus 341 i~vwd~~~~~~~-----------~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~-------------- 393 (445)
T 2ovr_B 341 VKIWDIKTGQCL-----------QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-------------- 393 (445)
T ss_dssp EEEEETTTCCEE-----------EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--------------
T ss_pred EEEEECCCCcEE-----------EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc--------------
Confidence 999999877654 2233 388899999995 6899999999999999998752
Q ss_pred eeeccCCCcceeEEEE-----eecCcCeEEEEEcCCCCEEEEEeCCce----EEEEecCC
Q 001321 584 VHALPEGKISLCRAVF-----SLVNSPVRALQFTSSGAKLAVGFECGR----VAVLDMNL 634 (1100)
Q Consensus 584 ~~~i~~~~~~~~~~~~-----~~h~~~VtsLafSp~g~~LavGs~dG~----V~vwD~~~ 634 (1100)
.+..+ ..|.++|++++|+|++.+||+|+.||+ |.|||+..
T Consensus 394 -----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 394 -----------FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -----------EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -----------eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 22333 368899999999999999999999998 99999874
No 53
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.6e-29 Score=289.83 Aligned_cols=201 Identities=14% Similarity=0.153 Sum_probs=171.1
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCceEEEe---CCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEc
Q 001321 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGIEGLLI---SPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~~~~~~---~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~ 105 (1100)
..||...|.+++|+|++ ++||+|+.||.|+||+....+.... .+|..+|.+++|+| ++.+|++++.|+.|++||+
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 148 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDF 148 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEET
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEEC
Confidence 36899999999999999 9999999999999999965443322 36999999999999 7789999999999999999
Q ss_pred CCCceeeeeec---CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 106 ESRSLACCLKW---ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 106 ~s~~~l~~~~~---~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
.++.......+ ...|++++|+|+++++++|+.+|.|++|+++ +... ..+..|. ..|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~---~~~~~h~------------~~v~~~ 210 (383)
T 3ei3_B 149 SGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---GHEI---FKEKLHK------------AKVTHA 210 (383)
T ss_dssp TSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---SCEE---EEEECSS------------SCEEEE
T ss_pred CCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---CCEE---EEeccCC------------CcEEEE
Confidence 97655444433 3779999999999999999999999999984 3333 2355555 889999
Q ss_pred EeccCCCCC-EEEEEEcCCEEEEEEccC----CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 183 LPHPNSSGN-RVLIAYENALVILWDVSE----AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 183 ~f~P~~~g~-~ll~~~~dg~V~lwdl~~----~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
+|+| ++. ++++++.|+.|++||+.+ +.+...++| ...|++++|
T Consensus 211 ~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~ 258 (383)
T 3ei3_B 211 EFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH------------------------------EKPVNAAYF 258 (383)
T ss_dssp EECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC------------------------------SSCEEEEEE
T ss_pred EECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC------------------------------CCceEEEEE
Confidence 9988 565 799999999999999998 666666666 788999998
Q ss_pred ecC-CCCEEEEEEcCCcEEEEecCCC
Q 001321 258 ASS-SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 258 ~sp-dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
. | +|.+|++++.||.|++||+.++
T Consensus 259 s-~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 259 N-PTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp C-TTTSCEEEEEESSSEEEEEETTBT
T ss_pred c-CCCCCEEEEEcCCCcEEEEECCCC
Confidence 6 9 9999999999999999999765
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-31 Score=315.33 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=153.5
Q ss_pred ecCCCCCeEEEEEcCCC---------CEEEEEE-------------------CCCeEEEEeCCCceE-----EEeCCCCC
Q 001321 31 HYGIPATASILAFDHIQ---------RLLAIAT-------------------LDGRIKVIGGDGIEG-----LLISPSQL 77 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~---------~lLA~gs-------------------~dG~I~vw~~~~~~~-----~~~~~h~~ 77 (1100)
.+-+++.|.+|+|+|++ ++||+|+ .||.|+||+.+..+. ..+..|.+
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~ 208 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG 208 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence 33457788999999887 6777755 678999999854432 22456788
Q ss_pred CEEEEEEEeC------CCEEEEEECCCcEEEEEcCCCcee------------eeeecCCCeEEEEEecCCCEEEEEeCCC
Q 001321 78 PYKNLEFLQN------QGFLISITNDNEIQVWSLESRSLA------------CCLKWESNITAFSVISGSHFMYIGDENG 139 (1100)
Q Consensus 78 ~V~~l~fs~d------~~~Lls~s~d~~I~vWd~~s~~~l------------~~~~~~~~Vt~~~~s~~~~~l~~G~~dG 139 (1100)
.|..|+|+|+ +.+|++++.|++|++||+.++... ....|...|++++|+++ ..|++|+.||
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~Dg 287 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNG 287 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTS
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCC
Confidence 9999999996 579999999999999999876421 22257789999999986 4899999999
Q ss_pred cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE--EeccCCCC-CEEEEEEcCCEEEEEEccCCEEE-EE
Q 001321 140 LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV--LPHPNSSG-NRVLIAYENALVILWDVSEAQII-FV 215 (1100)
Q Consensus 140 ~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv--~f~P~~~g-~~ll~~~~dg~V~lwdl~~~~~~-~~ 215 (1100)
+|++|++..... .. ..+.+|. ..|.+| .|+| ++ .+|++++.|++|+|||+.+++.. ..
T Consensus 288 tV~lWD~~~~~~-~~---~~~~~H~------------~~V~sv~~~~s~--~g~~~laS~S~D~tvklWD~~~~~~~~~~ 349 (524)
T 2j04_B 288 FVAEFDLTDPEV-PS---FYDQVHD------------SYILSVSTAYSD--FEDTVVSTVAVDGYFYIFNPKDIATTKTT 349 (524)
T ss_dssp EEEEEETTBCSS-CS---EEEECSS------------SCEEEEEEECCT--TSCCEEEEEETTSEEEEECGGGHHHHCEE
T ss_pred EEEEEECCCCCC-ce---EEeeccc------------ccEEEEEEEcCC--CCCeEEEEeccCCeEEEEECCCCCccccc
Confidence 999999874211 11 2356666 889999 4655 56 77999999999999999886542 22
Q ss_pred ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 216 GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 216 ~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+| . ....|.+++|. |++..+++++.|++|++||+.++
T Consensus 350 ~~~--------~--------------------~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 350 VSR--------F--------------------RGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp EEE--------C--------------------SCCSCCCEEEE-TTTTEEEEECSSSEEEEEETTCT
T ss_pred ccc--------c--------------------ccCcccceEeC-CCcCeEEEeCCCCcEEEEECccc
Confidence 233 0 02347889986 99999999999999999998643
No 55
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=4.3e-28 Score=275.01 Aligned_cols=312 Identities=14% Similarity=0.174 Sum_probs=224.9
Q ss_pred EEEEEcCCC--ceeeee-ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 100 IQVWSLESR--SLACCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 100 I~vWd~~s~--~~l~~~-~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
+.++...+. ++..++ .|.+.|++++|+|+ +++|++|+.||+|+||++.............+.+|.
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~----------- 86 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS----------- 86 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS-----------
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC-----------
Confidence 444444444 344444 78999999999998 589999999999999999864433222123455555
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
..|.++.|+| ++++|++++.|+.|++|+............ . ...+...
T Consensus 87 -~~V~~~~~s~--dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~---------~--------------------~~~~~~~ 134 (340)
T 4aow_A 87 -HFVSDVVISS--DGQFALSGSWDGTLRLWDLTTGTTTRRFVG---------H--------------------TKDVLSV 134 (340)
T ss_dssp -SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC---------C--------------------SSCEEEE
T ss_pred -CCEEEEEECC--CCCEEEEEcccccceEEeecccceeeeecC---------C--------------------CCceeEE
Confidence 8999999988 788999999999999999999876554322 0 5566677
Q ss_pred EEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCC
Q 001321 256 CWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGD 335 (1100)
Q Consensus 256 ~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~ 335 (1100)
+|. +++..|++++.||.+++||...... ..... ..
T Consensus 135 ~~~-~~~~~l~s~s~d~~~~~~d~~~~~~------------~~~~~---------------------~~----------- 169 (340)
T 4aow_A 135 AFS-SDNRQIVSGSRDKTIKLWNTLGVCK------------YTVQD---------------------ES----------- 169 (340)
T ss_dssp EEC-TTSSCEEEEETTSCEEEECTTSCEE------------EEECS---------------------SS-----------
T ss_pred EEe-ecCccceeecCCCeEEEEEeCCCce------------EEEEe---------------------cc-----------
Confidence 765 9999999999999999999753200 00000 00
Q ss_pred CCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeecc
Q 001321 336 EIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQ 415 (1100)
Q Consensus 336 ~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~ 415 (1100)
T Consensus 170 -------------------------------------------------------------------------------- 169 (340)
T 4aow_A 170 -------------------------------------------------------------------------------- 169 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCC
Q 001321 416 EKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD 495 (1100)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~ 495 (1100)
+...+++..+ ...+..
T Consensus 170 -----------------~~~~v~~~~~-----------------------------------------------~~~~~~ 185 (340)
T 4aow_A 170 -----------------HSEWVSCVRF-----------------------------------------------SPNSSN 185 (340)
T ss_dssp -----------------CSSCEEEEEE-----------------------------------------------CSCSSS
T ss_pred -----------------ccCcccceEE-----------------------------------------------ccCCCC
Confidence 0000000000 011223
Q ss_pred cEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCccee
Q 001321 496 RVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFL 575 (1100)
Q Consensus 496 ~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~ 575 (1100)
.++++++.|++|++||+..+.+. ..+.+|..+|++|+|+|++++|++|+.||.|++|++....
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~-----------~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~------ 248 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLK-----------TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK------ 248 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE------
T ss_pred cEEEEEcCCCEEEEEECCCCcee-----------eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc------
Confidence 47899999999999999988755 4567899999999999999999999999999999998751
Q ss_pred eeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeec------CCCCCC
Q 001321 576 FVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDD------ISGSSS 649 (1100)
Q Consensus 576 ~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~------~~~~~~ 649 (1100)
++..+ .+...|++++|+|++.+ ++++.|+.|+|||+++...+..... ..+|..
T Consensus 249 -------------------~~~~~-~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 249 -------------------HLYTL-DGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp -------------------EEEEE-ECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred -------------------eeeee-cCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence 23333 45678999999999865 4556789999999998877654432 125899
Q ss_pred CeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCc
Q 001321 650 PIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1100)
Q Consensus 650 ~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~ 703 (1100)
.|++++|++++ .+|++|+.||.|++||..+|.
T Consensus 308 ~v~~l~~s~dg----------------------~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADG----------------------QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTS----------------------SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCC----------------------CEEEEEeCCCEEEEEeCCCcC
Confidence 99999998654 449999999999999988774
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.1e-29 Score=288.75 Aligned_cols=329 Identities=12% Similarity=0.164 Sum_probs=233.7
Q ss_pred EEeCCCCCCEEEEEEEeC----CCEEEEEECCCcEEEEEcCCCceeeeee------cCCCeEEEEEecC----CCEEEEE
Q 001321 70 LLISPSQLPYKNLEFLQN----QGFLISITNDNEIQVWSLESRSLACCLK------WESNITAFSVISG----SHFMYIG 135 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d----~~~Lls~s~d~~I~vWd~~s~~~l~~~~------~~~~Vt~~~~s~~----~~~l~~G 135 (1100)
.+..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+..+. +...|++++|+|+ +.++++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 355689999999999983 5677777778899999999887665552 5578999999999 6799999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE
Q 001321 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV 215 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~ 215 (1100)
+.+|.|+||++.. ++.. ..+.+|. ..|.++.|+|. ++.+|++++.||.|++||+.+++....
T Consensus 92 ~~dg~i~v~d~~~--~~~~---~~~~~~~------------~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 92 GSRGIIRIINPIT--MQCI---KHYVGHG------------NAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp ETTCEEEEECTTT--CCEE---EEEESCC------------SCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cCCCEEEEEEchh--ceEe---eeecCCC------------CcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence 9999999998764 3443 2355555 89999999884 577899999999999999999987766
Q ss_pred e----cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccC
Q 001321 216 G----GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTG 291 (1100)
Q Consensus 216 ~----~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~ 291 (1100)
+ +| ...|.+++|. |++.+|++++.||.|++||+.++.....
T Consensus 154 ~~~~~~~------------------------------~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~---- 198 (366)
T 3k26_A 154 FGGVEGH------------------------------RDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNA---- 198 (366)
T ss_dssp ECSTTSC------------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHH----
T ss_pred ecccccc------------------------------cCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccc----
Confidence 5 33 7889999996 9999999999999999999975521110
Q ss_pred CCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcc
Q 001321 292 SRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSF 371 (1100)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v 371 (1100)
+.. . ....+++..+..... ...
T Consensus 199 -------~~~--------------~----~~~~~~~~~~~~~~~-----------~~~---------------------- 220 (366)
T 3k26_A 199 -------IKE--------------S----YDYNPNKTNRPFISQ-----------KIH---------------------- 220 (366)
T ss_dssp -------HHH--------------H----HTCCGGGCSSCCCCE-----------EEC----------------------
T ss_pred -------cce--------------e----EEecCCCCcccccce-----------eec----------------------
Confidence 000 0 000000000000000 000
Q ss_pred eeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCc
Q 001321 372 ADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHS 451 (1100)
Q Consensus 372 ~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~ 451 (1100)
.+ . +
T Consensus 221 -----~~--------------------~---~------------------------------------------------ 224 (366)
T 3k26_A 221 -----FP--------------------D---F------------------------------------------------ 224 (366)
T ss_dssp -----CC--------------------S---E------------------------------------------------
T ss_pred -----cC--------------------c---c------------------------------------------------
Confidence 00 0 0
Q ss_pred hhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeecc--c-ee
Q 001321 452 SKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDA--E-VQ 528 (1100)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~--~-~~ 528 (1100)
....++...+.++.++ ++++++++.||.|++||+............. . ..
T Consensus 225 -------------------------~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 277 (366)
T 3k26_A 225 -------------------------STRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTI 277 (366)
T ss_dssp -------------------------EECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEE
T ss_pred -------------------------ccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhe
Confidence 0001122222333444 5689999999999999988765310000000 0 01
Q ss_pred eeeecCCCCCeeEEEEeeC--CCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeec--Cc
Q 001321 529 GIEVAGSRAPVSTLSFCFI--NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV--NS 604 (1100)
Q Consensus 529 ~~~l~~h~~~Vt~lafspd--~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h--~~ 604 (1100)
...+..|...|++++|+|+ +++|++|+.||.|++|++....... .....+..| .+
T Consensus 278 ~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---------------------~~~~~~~~~~~~~ 336 (366)
T 3k26_A 278 LGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK---------------------AKCTTLTHHKCGA 336 (366)
T ss_dssp EEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG---------------------CEEEEECCTTCCS
T ss_pred eccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc---------------------ccceEEcccccCC
Confidence 1336688899999999999 9999999999999999998753210 133456677 79
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 605 PVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 605 ~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
+|++++|+|++++|++|+.||.|+|||+.
T Consensus 337 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 337 AIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999999999999986
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.8e-29 Score=284.15 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=165.5
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEEC---CCeEEEEeCCCceE--EEeCCCCCCEEEEEEEeC---CCEEEEEECCCcE
Q 001321 30 VHYGIPATASILAFDHIQR-LLAIATL---DGRIKVIGGDGIEG--LLISPSQLPYKNLEFLQN---QGFLISITNDNEI 100 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~-lLA~gs~---dG~I~vw~~~~~~~--~~~~~h~~~V~~l~fs~d---~~~Lls~s~d~~I 100 (1100)
...||...|.+++|+|++. ++|+|+. ||.|+||+....+. ....+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 3468999999999999995 5566766 99999999976544 345589999999999998 6999999999999
Q ss_pred EEEEcCCCc-eeeee-ecCCCeEEEEE------ecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 101 QVWSLESRS-LACCL-KWESNITAFSV------ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 101 ~vWd~~s~~-~l~~~-~~~~~Vt~~~~------s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
++||+.+++ .+..+ .|...|+++.+ +|+++++++|+.+|.|++|++......+. .+..+.
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~-------- 160 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA----NMEPVQ-------- 160 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE----EECCCT--------
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce----eccccC--------
Confidence 999999887 55555 68889999955 67899999999999999999875432222 132221
Q ss_pred CCCCCCeEEEE----eccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCC
Q 001321 173 LLSHQPVVGVL----PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1100)
Q Consensus 173 ~~~~~~V~sv~----f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~ 248 (1100)
......|.++. |+| ++.++++++.||.|++||+.+++......|
T Consensus 161 ~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------------------------------ 208 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRWETNI------------------------------ 208 (357)
T ss_dssp TSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------
T ss_pred CCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceeeecCC------------------------------
Confidence 00125789998 555 688899999999999999999988777666
Q ss_pred CCceEEEEEecC---CCCEEEEEEcCCcEEEEecC
Q 001321 249 EKEISALCWASS---SGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 249 ~~~V~sl~w~sp---dg~~l~sg~~DG~I~lWd~~ 280 (1100)
...|.+++|. | ++.++++++.||.|++||+.
T Consensus 209 ~~~v~~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 209 KNGVCSLEFD-RKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp SSCEEEEEES-CSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CCceEEEEcC-CCCCCCCEEEEECCCCeEEEEeCc
Confidence 7789999986 8 89999999999999999874
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8e-28 Score=286.20 Aligned_cols=345 Identities=13% Similarity=0.163 Sum_probs=247.9
Q ss_pred EEEeCCCCCC-EEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEE
Q 001321 69 GLLISPSQLP-YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 69 ~~~~~~h~~~-V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~ 146 (1100)
...+.+|..+ +.++.| ++.+|++++.|++|++||+.+++.+..+ .|.+.|++++|++++ ++++|+.||+|++|++
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 3455678776 466555 5679999999999999999999988887 688999999999988 9999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccccccc
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~ 226 (1100)
+. +... ..+.+|. ..|.++.|+|..++.++++++.||.|++||+.++.............. .
T Consensus 191 ~~--~~~~---~~~~~h~------------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-~ 252 (464)
T 3v7d_B 191 KK--GCCT---HVFEGHN------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-V 252 (464)
T ss_dssp TT--TEEE---EEECCCS------------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE-E
T ss_pred CC--CcEE---EEECCCC------------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce-E
Confidence 74 4443 3366665 899999999766788899999999999999988754322111000000 0
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1100)
.. .+............+...|.++. +++.++++|+.||.|++||+.++.. +
T Consensus 253 ~~-----~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~-----------~---------- 303 (464)
T 3v7d_B 253 FH-----TPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKC-----------L---------- 303 (464)
T ss_dssp ES-----CGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEE-----------E----------
T ss_pred ee-----ccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcE-----------E----------
Confidence 00 00000000000111245566653 6799999999999999999864310 0
Q ss_pred CcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCC
Q 001321 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1100)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1100)
..+ .
T Consensus 304 ----~~~-------------------~----------------------------------------------------- 307 (464)
T 3v7d_B 304 ----YIL-------------------S----------------------------------------------------- 307 (464)
T ss_dssp ----EEE-------------------C-----------------------------------------------------
T ss_pred ----EEe-------------------c-----------------------------------------------------
Confidence 000 0
Q ss_pred CcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccC
Q 001321 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1100)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1100)
T Consensus 308 -------------------------------------------------------------------------------- 307 (464)
T 3v7d_B 308 -------------------------------------------------------------------------------- 307 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee
Q 001321 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1100)
Q Consensus 467 ~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp 546 (1100)
++...+..+.++++++++++|+.||+|++||+.++.+. ..+.+|...|++++|+
T Consensus 308 --------------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~h~~~v~~~~~~- 361 (464)
T 3v7d_B 308 --------------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-----------YTLQGHTALVGLLRLS- 361 (464)
T ss_dssp --------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEEC-
T ss_pred --------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-----------EEEeCCCCcEEEEEEc-
Confidence 00000011245677779999999999999999887755 4567899999999997
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCce
Q 001321 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR 626 (1100)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~ 626 (1100)
+.+|++|+.||.|++|++.... ......+...+..++|++++++|++|+ ||.
T Consensus 362 -~~~l~s~s~dg~v~vwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 362 -DKFLVSAAADGSIRGWDANDYS--------------------------RKFSYHHTNLSAITTFYVSDNILVSGS-ENQ 413 (464)
T ss_dssp -SSEEEEEETTSEEEEEETTTCC--------------------------EEEEEECTTCCCEEEEEECSSEEEEEE-TTE
T ss_pred -CCEEEEEeCCCcEEEEECCCCc--------------------------eeeeecCCCCccEEEEEeCCCEEEEec-CCe
Confidence 5899999999999999998741 112234777888999999999999999 899
Q ss_pred EEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 627 VAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 627 V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
|+|||+++++.+.. ...+|...|.+++|+ + ..+++++++||.+.+|-
T Consensus 414 i~iwd~~~g~~~~~--~~~~~~~~v~~v~~~--~---------------------~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 414 FNIYNLRSGKLVHA--NILKDADQIWSVNFK--G---------------------KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEETTTCCEEES--CTTTTCSEEEEEEEE--T---------------------TEEEEEEEETTEEEEEE
T ss_pred EEEEECCCCcEEeh--hhccCCCcEEEEEec--C---------------------CEEEEEEEeCCeEEEEE
Confidence 99999999998832 134689999999996 1 25677777888776553
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-28 Score=278.50 Aligned_cols=304 Identities=13% Similarity=0.169 Sum_probs=233.0
Q ss_pred eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEE
Q 001321 68 EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 68 ~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~ 146 (1100)
+...+.+|..+|++++|+|++.+|++++.|+.|++||+.+++.+..+ .|.+.|++++|+|+++++++++.||.|++|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 44567899999999999999999999999999999999999988887 58889999999999999999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-----CEEEEEEccCCEEE---EEecC
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-----ALVILWDVSEAQII---FVGGG 218 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-----g~V~lwdl~~~~~~---~~~~~ 218 (1100)
.. ++.... +. +. ..|.++.|+| ++.++++++.+ |.|.+||+...... .....
T Consensus 104 ~~--~~~~~~---~~-~~------------~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 104 SN--GQCVAT---WK-SP------------VPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp TT--CCEEEE---EE-CS------------SCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred CC--CcEEEE---ee-cC------------CCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 75 333321 22 22 7899999988 68889999999 99999999876321 11000
Q ss_pred CcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCccee
Q 001321 219 KDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVK 298 (1100)
Q Consensus 219 ~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~ 298 (1100)
. ... .+ ........+.+++|. |++.++++++.||.|++||+.+.. .
T Consensus 164 ~--~~~-~~----------------~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-----------~--- 209 (369)
T 3zwl_B 164 E--PIH-KI----------------ITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVSNNY-----------E--- 209 (369)
T ss_dssp S--CSE-EE----------------ECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETTTTT-----------E---
T ss_pred c--eee-ec----------------cCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECCCCc-----------E---
Confidence 0 000 00 000013389999986 999999999999999999986420 0
Q ss_pred eeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEcc
Q 001321 299 LELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLS 378 (1100)
Q Consensus 299 l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p 378 (1100)
.+..+ ..
T Consensus 210 ----------~~~~~---------------------------------~~------------------------------ 216 (369)
T 3zwl_B 210 ----------YVDSI---------------------------------DL------------------------------ 216 (369)
T ss_dssp ----------EEEEE---------------------------------EC------------------------------
T ss_pred ----------eEEEE---------------------------------ec------------------------------
Confidence 00000 00
Q ss_pred CCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHH
Q 001321 379 SAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEI 458 (1100)
Q Consensus 379 ~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~ 458 (1100)
+.
T Consensus 217 ------------------------------------------------------~~------------------------ 218 (369)
T 3zwl_B 217 ------------------------------------------------------HE------------------------ 218 (369)
T ss_dssp ------------------------------------------------------CS------------------------
T ss_pred ------------------------------------------------------CC------------------------
Confidence 00
Q ss_pred HhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCC
Q 001321 459 ATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAP 538 (1100)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~ 538 (1100)
..+..+++++++++|++++.||.|++||+..+.+.. .+. +...
T Consensus 219 -------------------------~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----------~~~-~~~~ 261 (369)
T 3zwl_B 219 -------------------------KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK-----------KYE-TDCP 261 (369)
T ss_dssp -------------------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----------EEE-CSSC
T ss_pred -------------------------CceeEEEECCCCCEEEEecCCceEEEEECCCCceee-----------eec-CCCC
Confidence 000122466788899999999999999999877541 122 5678
Q ss_pred eeEEEEeeCCCeEEEEecCc--------------eEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCc
Q 001321 539 VSTLSFCFINSSLAVGNEFG--------------LVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNS 604 (1100)
Q Consensus 539 Vt~lafspd~~~Lasg~~dG--------------~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~ 604 (1100)
+++++|+|+++++++++.++ .+++|++... .++..+.+|.+
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------------------------~~~~~~~~~~~ 316 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-------------------------EEIGRVQGHFG 316 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-------------------------CEEEEEECCSS
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-------------------------cchhheecccC
Confidence 99999999999999999998 6777776554 24567789999
Q ss_pred CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEE
Q 001321 605 PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 605 ~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~ 638 (1100)
.|++++|+|++++|++|+.||.|+|||++.+...
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 9999999999999999999999999999876543
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.2e-28 Score=283.27 Aligned_cols=218 Identities=17% Similarity=0.224 Sum_probs=172.6
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCceEEEe--------------CCCCCCEEEEEEEe-CCCEEEE
Q 001321 30 VHYGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLI--------------SPSQLPYKNLEFLQ-NQGFLIS 93 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~~~~~~--------------~~h~~~V~~l~fs~-d~~~Lls 93 (1100)
...||.+.|++++|+| ++++||+|+.||.|+||+....+.... ..|..+|.+++|+| ++.+|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 4457999999999999 999999999999999999965433211 25999999999999 7779999
Q ss_pred EECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCC---CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 94 ITNDNEIQVWSLESRSLACCLKWESNITAFSVISGS---HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 94 ~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~---~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
++.|+.|++||+.+++....+.+...+.++.+.+.. .++++|+.+|.|++|++... ... ..+..|.
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~---~~~~~~~------ 186 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--SCS---HILQGHR------ 186 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--CCC---EEECCCC------
T ss_pred EeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--cee---eeecCCC------
Confidence 999999999999999999999999999999999855 49999999999999998753 222 2355555
Q ss_pred CCCCCCCCeEEEEeccCCCCC-EEEEEEcCCEEEEEEccCCE-EEEEe-cCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGN-RVLIAYENALVILWDVSEAQ-IIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~-~ll~~~~dg~V~lwdl~~~~-~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
..|.+++|+| ++. .+++++.||.|++||+.++. ....+ .+... ...........
T Consensus 187 ------~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 243 (408)
T 4a11_B 187 ------QEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---------------KSQAVESANTA 243 (408)
T ss_dssp ------SCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---------------SCCCTTTSSCS
T ss_pred ------CcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---------------cceeecccccc
Confidence 8899999988 455 58899999999999998764 22222 11000 00000111122
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+...|.+++|. |++.+|++++.||.|++||+.++
T Consensus 244 ~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 244 HNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTC
T ss_pred ccCceeEEEEc-CCCCEEEEecCCCeEEEEECCCC
Confidence 37889999986 99999999999999999999765
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1e-29 Score=300.05 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=164.1
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCce---EEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcC
Q 001321 32 YGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLE 106 (1100)
Q Consensus 32 ~G~~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~~---~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~ 106 (1100)
.+|...|+||+|+| ++++||+|+.||.|+|||....+ .+...+|.++|++|+|+| ++.+|++++.|++|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 46788999999999 56799999999999999985432 334468999999999998 67899999999999999999
Q ss_pred CCceeeeeec---CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 107 SRSLACCLKW---ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 107 s~~~l~~~~~---~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
++.......+ ...+++++|+|++.++++|+.+|.|++|+++. +.. ..+.+|. ..|.+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~---~~~---~~~~~h~------------~~v~~v~ 257 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG---KEL---WNLRMHK------------KKVTHVA 257 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS---CBC---CCSBCCS------------SCEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc---cee---EEEeccc------------ceEEeee
Confidence 8766544432 34689999999999999999999999999763 222 2355555 8899999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~ 263 (1100)
|+|.. ...+++++.|+.|++||+.+.+....+.. ...+...|++++|. |+|.
T Consensus 258 ~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~--------------------------~~~h~~~v~~~~~s-pdg~ 309 (435)
T 4e54_B 258 LNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLY--------------------------SLPHRHPVNAACFS-PDGA 309 (435)
T ss_dssp ECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSB--------------------------CCBCSSCEEECCBC-TTSS
T ss_pred ecCCC-ceEEEEecCcceeeEEecccccccceEEE--------------------------eeeccccccceeEC-CCCC
Confidence 99952 34688999999999999987643211100 00117789999985 9999
Q ss_pred EEEEEEcCCcEEEEecCCC
Q 001321 264 ILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 264 ~l~sg~~DG~I~lWd~~~~ 282 (1100)
+|++++.||.|++||+.++
T Consensus 310 ~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEEEESSSCEEEEESSSS
T ss_pred eeEEEcCCCEEEEEECCCC
Confidence 9999999999999999765
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.3e-28 Score=283.07 Aligned_cols=330 Identities=14% Similarity=0.105 Sum_probs=232.3
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc--eeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC
Q 001321 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS--LACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~--~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~ 149 (1100)
..|..+|.+++|+|++.+|++++.|+.|++||+.+++ .+..+ .|...|++++|+|+++++++|+.+|.|++|++..
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~- 83 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG- 83 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC-
Confidence 3488999999999999999999999999999999986 55555 6889999999999999999999999999999975
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE---EE-E-ecCCccccc
Q 001321 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI---IF-V-GGGKDLQLK 224 (1100)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~---~~-~-~~~~~~~~~ 224 (1100)
+..... +.+..+. ..|.++.|+| ++.+|++++.+|.|++||+..+.. .. . .+|
T Consensus 84 -~~~~~~-~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------ 141 (372)
T 1k8k_C 84 -RTWKPT-LVILRIN------------RAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI------ 141 (372)
T ss_dssp -TEEEEE-EECCCCS------------SCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC------
T ss_pred -Ceeeee-EEeecCC------------CceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc------
Confidence 332221 2334444 7899999988 688899999999999999998752 22 1 122
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeecccc
Q 001321 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSA 304 (1100)
Q Consensus 225 ~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (1100)
...|++++|. |++.++++++.||.|++||+........ +...
T Consensus 142 ------------------------~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------~~~~------ 183 (372)
T 1k8k_C 142 ------------------------RSTVLSLDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEER-------PAPT------ 183 (372)
T ss_dssp ------------------------CSCEEEEEEC-TTSSEEEEEETTSCEEEEECCCTTTSCC-------CCCB------
T ss_pred ------------------------CCCeeEEEEc-CCCCEEEEEcCCCCEEEEEccccccccc-------cccc------
Confidence 6789999986 9999999999999999999864421110 0000
Q ss_pred CCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCC
Q 001321 305 ERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATV 384 (1100)
Q Consensus 305 ~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~ 384 (1100)
.|.. ....
T Consensus 184 ---------~~~~-----~~~~---------------------------------------------------------- 191 (372)
T 1k8k_C 184 ---------PWGS-----KMPF---------------------------------------------------------- 191 (372)
T ss_dssp ---------TTBS-----CCCT----------------------------------------------------------
T ss_pred ---------cccc-----ccch----------------------------------------------------------
Confidence 0000 0000
Q ss_pred CCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccc
Q 001321 385 GNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKL 464 (1100)
Q Consensus 385 ~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (1100)
+....
T Consensus 192 -------------~~~~~-------------------------------------------------------------- 196 (372)
T 1k8k_C 192 -------------GELMF-------------------------------------------------------------- 196 (372)
T ss_dssp -------------TCEEE--------------------------------------------------------------
T ss_pred -------------hhheE--------------------------------------------------------------
Confidence 00000
Q ss_pred cCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEE
Q 001321 465 HSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSF 544 (1100)
Q Consensus 465 ~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~laf 544 (1100)
...++...+..+.+++++++|++++.||.|++||+..+.+. ..+..|..+|++++|
T Consensus 197 -------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~ 252 (372)
T 1k8k_C 197 -------------ESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV-----------ATLASETLPLLAVTF 252 (372)
T ss_dssp -------------ECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE-----------EEEECSSCCEEEEEE
T ss_pred -------------ecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee-----------EEEccCCCCeEEEEE
Confidence 00011112233467788889999999999999999877754 345678889999999
Q ss_pred eeCCCeEEEEecCceEEEEEecCCCCCcceeeec--cC-CCc-------eeec--cCCCccee-----EEEE-eecCcCe
Q 001321 545 CFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVL--ET-KSE-------VHAL--PEGKISLC-----RAVF-SLVNSPV 606 (1100)
Q Consensus 545 spd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~--~~-~~~-------~~~i--~~~~~~~~-----~~~~-~~h~~~V 606 (1100)
+|++.+|++| .||.|++|++...... ..+.. .. ... +... ....+... ...+ .+|.++|
T Consensus 253 ~~~~~~l~~~-~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 329 (372)
T 1k8k_C 253 ITESSLVAAG-HDCFPVLFTYDSAAGK--LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV 329 (372)
T ss_dssp EETTEEEEEE-TTSSCEEEEEETTTTE--EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred ecCCCEEEEE-eCCeEEEEEccCcCce--EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence 9999999888 8999999999871110 00000 00 000 0000 00000000 0122 4899999
Q ss_pred EEEEEc-CCC---CEEEEEeCCceEEEEecCCceE
Q 001321 607 RALQFT-SSG---AKLAVGFECGRVAVLDMNLLSV 637 (1100)
Q Consensus 607 tsLafS-p~g---~~LavGs~dG~V~vwD~~~~~~ 637 (1100)
++++|+ ++| .+|++|+.||.|+|||+++++.
T Consensus 330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 999966 677 8999999999999999987543
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.3e-27 Score=284.30 Aligned_cols=219 Identities=16% Similarity=0.232 Sum_probs=167.2
Q ss_pred ceeeeecCCCCCe-EEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 26 LRIAVHYGIPATA-SILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 26 ~~~~~~~G~~~~v-~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
+......||...+ +|++++ +++||+|+.||.|++|+....+.+ ...+|.++|.+++|++++ +|++++.|++|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3444556888774 677775 679999999999999998655544 566899999999999996 99999999999999
Q ss_pred EcCCCceeeee-ecCCCeEEEEEe--cCCCEEEEEeCCCcEEEEEEecCCCeeeee-----ceeeccccc-ccccCCCCC
Q 001321 104 SLESRSLACCL-KWESNITAFSVI--SGSHFMYIGDENGLMSVIKYDADEGKLFQL-----PYNISADAL-SEKAGFPLL 174 (1100)
Q Consensus 104 d~~s~~~l~~~-~~~~~Vt~~~~s--~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~-----~~~i~~~~~-~~~~~~~~~ 174 (1100)
|+.+++.+..+ .|.+.|++++++ +++.++++|+.||.|++|++.......... +........ .........
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 99999988877 588999999999 577899999999999999987633211100 000000000 000001123
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEIS 253 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~ 253 (1100)
+...|.++.+ ++.++++++.||.|++||+.+++.+..+ +| ...|.
T Consensus 269 ~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~------------------------------~~~v~ 314 (464)
T 3v7d_B 269 HMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGH------------------------------TDRIY 314 (464)
T ss_dssp CSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCC------------------------------SSCEE
T ss_pred ccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCC------------------------------CCCEE
Confidence 3477888855 5678999999999999999998876543 44 77899
Q ss_pred EEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 254 ALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 254 sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+++|. |++..+++|+.||.|++||+.++
T Consensus 315 ~~~~~-~~~~~l~sg~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 315 STIYD-HERKRCISASMDTTIRIWDLENG 342 (464)
T ss_dssp EEEEE-TTTTEEEEEETTSCEEEEETTTT
T ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCCC
Confidence 99986 99999999999999999998654
No 64
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.6e-28 Score=279.43 Aligned_cols=204 Identities=11% Similarity=0.159 Sum_probs=169.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc---eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
.+.+.|.+++|+|++++||+|+.||.|+||+.... ......+|..+|.+++|+|++.+|++++.|+.|++||+.+++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 47889999999999999999999999999999766 445666899999999999999999999999999999999987
Q ss_pred eeee---eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 110 LACC---LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 110 ~l~~---~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
.... ..+...|++++|+|+++++++|+.+|.|++|+++......... .....|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-~~~~~~~------------~~i~~~~~~~ 152 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-HIKKPIR------------STVLSLDWHP 152 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-EECTTCC------------SCEEEEEECT
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-eeecccC------------CCeeEEEEcC
Confidence 5443 3577899999999999999999999999999998754321110 1112233 7899999988
Q ss_pred CCCCCEEEEEEcCCEEEEEEcc------------------CCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 187 NSSGNRVLIAYENALVILWDVS------------------EAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~------------------~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
++.++++++.||.|++||+. .++.+..+ +|
T Consensus 153 --~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 201 (372)
T 1k8k_C 153 --NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS----------------------------- 201 (372)
T ss_dssp --TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-----------------------------
T ss_pred --CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-----------------------------
Confidence 68889999999999999964 33333322 23
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.+++|. |++.+|++++.||.|++||+.++
T Consensus 202 -~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 202 -CGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp -SSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGT
T ss_pred -CCeEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence 7789999986 99999999999999999998643
No 65
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.7e-28 Score=305.83 Aligned_cols=207 Identities=15% Similarity=0.162 Sum_probs=173.5
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCc------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 31 HYGIPATASILAFDHIQ-RLLAIATLDGRIKVIGGDGI------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~-~lLA~gs~dG~I~vw~~~~~------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
..||.+.|++++|+|++ .+||+|+.||.|+||++... ....+.+|...|.+++|+|++.+|++++.|++|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 35899999999999875 79999999999999998532 234567899999999999999999999999999999
Q ss_pred EcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 104 SLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 104 d~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
|+.+++.+..+ .|...|++++|+|+++++++|+.||+|+||+... .... .+... ...+...|.++
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~----~~~~~--------~~~h~~~v~~~ 523 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKY----TISEG--------GEGHRDWVSCV 523 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEE----EECSS--------TTSCSSCEEEE
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC--Ccce----eeccC--------CCCCCCcEEEE
Confidence 99999887776 7889999999999999999999999999998642 1111 12110 11233789999
Q ss_pred EeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 183 LPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
.|+|......+++++.|+.|++||+.++++.. +.+| ...|++++|. |+
T Consensus 524 ~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~v~~s-pd 572 (694)
T 3dm0_A 524 RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH------------------------------TGYVSTVAVS-PD 572 (694)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC------------------------------SSCEEEEEEC-TT
T ss_pred EEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC------------------------------CCCEEEEEEe-CC
Confidence 99996545679999999999999999987654 4455 7889999985 99
Q ss_pred CCEEEEEEcCCcEEEEecCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|.+|++|+.||.|++||+.++
T Consensus 573 g~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 573 GSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp SSEEEEEETTSBCEEEETTTT
T ss_pred CCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999998654
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.6e-28 Score=279.54 Aligned_cols=232 Identities=8% Similarity=0.127 Sum_probs=168.3
Q ss_pred eeeecCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEeCCCceEE-E-----eCCCCCCEEEEEEEeC----CCEEEE
Q 001321 28 IAVHYGIPATASILAFDHI----QRLLAIATLDGRIKVIGGDGIEGL-L-----ISPSQLPYKNLEFLQN----QGFLIS 93 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~----~~lLA~gs~dG~I~vw~~~~~~~~-~-----~~~h~~~V~~l~fs~d----~~~Lls 93 (1100)
.....||.+.|.+++|+|+ ..++++++.+|.|+||+....+.+ . ...|...|.+++|+|+ +.+|++
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3566799999999999994 556666777889999999643322 2 2237789999999999 679999
Q ss_pred EECCCcEEEEEcCCCceeeeee-cCCCeEEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceee---cccccccc
Q 001321 94 ITNDNEIQVWSLESRSLACCLK-WESNITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNI---SADALSEK 168 (1100)
Q Consensus 94 ~s~d~~I~vWd~~s~~~l~~~~-~~~~Vt~~~~s~-~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i---~~~~~~~~ 168 (1100)
++.|+.|++||+.+++.+..+. |...|++++|+| ++.++++|+.||.|++|++.. ++... .+ ..|.
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~---~~~~~~~~~---- 161 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--DTLVA---IFGGVEGHR---- 161 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--TEEEE---EECSTTSCS----
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--CeEEE---Eeccccccc----
Confidence 9999999999999999888774 889999999999 899999999999999999864 33332 23 3444
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCC
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPE 248 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~ 248 (1100)
..|.+++|+| ++.+|++++.||.|++||+.+++....+.. ...+.......+..........+.....+
T Consensus 162 --------~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 162 --------DEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE-SYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp --------SCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH-HHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred --------CceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce-eEEecCCCCcccccceeeccCccccccCC
Confidence 8899999988 688899999999999999988654321110 00000000000000000000001111123
Q ss_pred CCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 249 EKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 249 ~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.+++|. +.++++++.||.|++||+.+.
T Consensus 231 ~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~ 261 (366)
T 3k26_A 231 RNYVDCVRWL---GDLILSKSCENAIVCWKPGKM 261 (366)
T ss_dssp SSCCCEEEEE---TTEEEEECSSSEEEEEEESST
T ss_pred cceEEEEEEc---CCEEEEEecCCEEEEEeCCCc
Confidence 7889999985 679999999999999998755
No 67
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.8e-28 Score=282.19 Aligned_cols=309 Identities=13% Similarity=0.099 Sum_probs=217.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECC-------CeEEEEeCCCce-----------EEEeCCCCCCEEEEEEEeCCCEEE
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLD-------GRIKVIGGDGIE-----------GLLISPSQLPYKNLEFLQNQGFLI 92 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~d-------G~I~vw~~~~~~-----------~~~~~~h~~~V~~l~fs~d~~~Ll 92 (1100)
.|-+..+|.|++|+|++++||+|+.| +.|+||+.+... ...+.+|...|.+++|. +..++
T Consensus 10 ~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~ 87 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIIL 87 (365)
T ss_dssp EEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEE
T ss_pred ecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEE
Confidence 34456689999999999999999864 359999874321 12345677777777654 44566
Q ss_pred EEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 93 SITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 93 s~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
+++.++...+ +.|+.++.+++|+++.....+... ...... ..
T Consensus 88 ~g~~~~~~~l------------------------------~s~~~d~~~r~~~~~~~~~~~~~~-~~~~~~-------~~ 129 (365)
T 4h5i_A 88 VGCNENSTKI------------------------------TQGKGNKHLRKFKYDKVNDQLEFL-TSVDFD-------AS 129 (365)
T ss_dssp EECCCCHHHH------------------------------HHTSCCCCEEEEEEETTTTEEEEE-EEECSS-------CC
T ss_pred EEECCCccEE------------------------------EEecCCCcEEEEEecCCCceEEEe-eeecee-------ec
Confidence 6665544333 344567778888887655544421 011100 01
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEE--cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~--~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
......+.+++|+| +|+++++++ .|++|+|||+.+++.+..+.| .+
T Consensus 130 ~~~~~~~~~v~fSp--Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~------------------------------~~ 177 (365)
T 4h5i_A 130 TNADDYTKLVYISR--EGTVAAIASSKVPAIMRIIDPSDLTEKFEIET------------------------------RG 177 (365)
T ss_dssp CCTTCCEEEEEECT--TSSCEEEEESCSSCEEEEEETTTTEEEEEEEC------------------------------SS
T ss_pred CCcccCEEEEEEcC--CCCEEEEEECCCCCEEEEeECCCCcEEEEeCC------------------------------CC
Confidence 11225689999988 788777665 689999999999998877766 77
Q ss_pred ceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEE
Q 001321 251 EISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLF 330 (1100)
Q Consensus 251 ~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~ll 330 (1100)
.|.+++|. |||+++++++.++ +++|+..++.. ......
T Consensus 178 ~V~~v~fs-pdg~~l~s~s~~~-~~~~~~~~~~~-----------~~~~~~----------------------------- 215 (365)
T 4h5i_A 178 EVKDLHFS-TDGKVVAYITGSS-LEVISTVTGSC-----------IARKTD----------------------------- 215 (365)
T ss_dssp CCCEEEEC-TTSSEEEEECSSC-EEEEETTTCCE-----------EEEECC-----------------------------
T ss_pred ceEEEEEc-cCCceEEecccee-EEEEEeccCcc-----------eeeeec-----------------------------
Confidence 89999985 9999999988655 56665543310 000000
Q ss_pred EEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeE
Q 001321 331 VYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTT 410 (1100)
Q Consensus 331 v~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~ 410 (1100)
T Consensus 216 -------------------------------------------------------------------------------- 215 (365)
T 4h5i_A 216 -------------------------------------------------------------------------------- 215 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccc
Q 001321 411 LLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITK 490 (1100)
Q Consensus 411 ~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~ 490 (1100)
.++...+..++
T Consensus 216 ---------------------------------------------------------------------~~~~~~v~~v~ 226 (365)
T 4h5i_A 216 ---------------------------------------------------------------------FDKNWSLSKIN 226 (365)
T ss_dssp ---------------------------------------------------------------------CCTTEEEEEEE
T ss_pred ---------------------------------------------------------------------CCCCCCEEEEE
Confidence 00000011225
Q ss_pred cCCCCcEEEEEecCC----cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEec
Q 001321 491 CHSVDRVYLAGYHDG----SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLN 566 (1100)
Q Consensus 491 ~s~~~~~l~Tg~~DG----tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~ 566 (1100)
++|+++++++++.|+ .|++||+......... ...+.+|..+|++|+|+||+++||+|+.||.|+|||+.
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-------SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-------EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceeccee-------eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 677888999998887 5888988766533111 13467888999999999999999999999999999998
Q ss_pred CCCCCcceeeeccCCCceeeccCCCcceeEEE-EeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCC
Q 001321 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAV-FSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNL 634 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~ 634 (1100)
+. +++.. +.+|.++|++|+|||||++||+|+.|++|+|||+..
T Consensus 300 ~~-------------------------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 300 DL-------------------------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TT-------------------------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CC-------------------------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 75 24444 478999999999999999999999999999999964
No 68
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=4.8e-28 Score=281.35 Aligned_cols=308 Identities=9% Similarity=0.090 Sum_probs=225.0
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc------ee-eeeecCCCeEEEEEecC----C---CEEEEEe
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS------LA-CCLKWESNITAFSVISG----S---HFMYIGD 136 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~------~l-~~~~~~~~Vt~~~~s~~----~---~~l~~G~ 136 (1100)
.+.+|..+|.+++|+| .+|++++.|+.|++||+.+++ .+ ....|...|++++|+|+ + .+|++|+
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 4568999999999998 789999999999999999987 44 44478899999999999 9 9999999
Q ss_pred CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec----cCCCCCE-EEEEEcCCEEEEEEccC--
Q 001321 137 ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH----PNSSGNR-VLIAYENALVILWDVSE-- 209 (1100)
Q Consensus 137 ~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~----P~~~g~~-ll~~~~dg~V~lwdl~~-- 209 (1100)
.+|.|++|+++............+..+... .....|.++.|+ | ++.+ |++++.||.|++||+.+
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSD-------MKKHSFWALKWGASNDR--LLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTT-------GGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSS
T ss_pred CCCCEEEEEccCCcccccccceeecccccc-------cCCCcEEEEEEeeccCC--CCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999986442111001224433100 001789999998 6 7888 99999999999999987
Q ss_pred ----CEEE------EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 210 ----AQII------FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 210 ----~~~~------~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
++.+ .+.+. ......+...|.+++|. |++ .+++++.||.|++||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGT-----------------------VESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISEL 214 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEE-----------------------ECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEET
T ss_pred cccccceeeccCcceeeee-----------------------eccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEEC
Confidence 4322 11110 00001127789999986 999 9999999999999998
Q ss_pred CCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcccccccee
Q 001321 280 STTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRC 359 (1100)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~ 359 (1100)
.++. .+ ..+. +...
T Consensus 215 ~~~~-----------~~--------------~~~~------------------~~~~----------------------- 228 (397)
T 1sq9_A 215 STLR-----------PL--------------YNFE------------------SQHS----------------------- 228 (397)
T ss_dssp TTTE-----------EE--------------EEEE------------------CCC------------------------
T ss_pred CCCc-----------ee--------------EEEe------------------cccc-----------------------
Confidence 6430 00 0000 0000
Q ss_pred eeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEE
Q 001321 360 VSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTV 439 (1100)
Q Consensus 360 ~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~ 439 (1100)
+.
T Consensus 229 -------------------------------------------------------------------------h~----- 230 (397)
T 1sq9_A 229 -------------------------------------------------------------------------MI----- 230 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------cc-----
Confidence 00
Q ss_pred EEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecC---CcEEEeeCCCCc
Q 001321 440 AEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD---GSVRIWDATYPV 516 (1100)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~D---GtIriWd~~~~~ 516 (1100)
. ....+..++++|++++|++++.| |.|++||+..+.
T Consensus 231 --------------------------------------~---~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 231 --------------------------------------N---NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp --------------------------------------C---CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred --------------------------------------c---cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 0 00001122566788899999999 999999998876
Q ss_pred eeEEeeeccceeeeeecC-------------CCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCc
Q 001321 517 FKLICALDAEVQGIEVAG-------------SRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSE 583 (1100)
Q Consensus 517 l~~~~~l~~~~~~~~l~~-------------h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~ 583 (1100)
+. ..+.. |...|++++|+|++++|++++.||.|+||++....
T Consensus 270 ~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------- 324 (397)
T 1sq9_A 270 RI-----------GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-------------- 324 (397)
T ss_dssp EE-----------EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--------------
T ss_pred cc-----------ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--------------
Confidence 54 22333 88899999999999999999999999999997752
Q ss_pred eeeccCCCcceeEEEEe------ec---------------CcCeEEEEEcCCC----------CEEEEEeCCceEEEEec
Q 001321 584 VHALPEGKISLCRAVFS------LV---------------NSPVRALQFTSSG----------AKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 584 ~~~i~~~~~~~~~~~~~------~h---------------~~~VtsLafSp~g----------~~LavGs~dG~V~vwD~ 632 (1100)
++..+. .| ..+|++++|+|++ ++|++|+.||.|+|||+
T Consensus 325 -----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 325 -----------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp -----------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred -----------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 334444 55 9999999999998 79999999999999999
Q ss_pred CCc
Q 001321 633 NLL 635 (1100)
Q Consensus 633 ~~~ 635 (1100)
.++
T Consensus 394 ~~g 396 (397)
T 1sq9_A 394 AGG 396 (397)
T ss_dssp EC-
T ss_pred CCC
Confidence 875
No 69
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-27 Score=267.41 Aligned_cols=287 Identities=13% Similarity=0.174 Sum_probs=227.3
Q ss_pred EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 69 GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 69 ~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
...+.+|..+|.+++| +++.+|++++.|+.|++||+.+++....+ .+...|++++|+|+++++++|+.+|.|++|++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 3456789999999999 88899999999999999999998877666 678899999999999999999999999999976
Q ss_pred cCCC-eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCcccccc
Q 001321 148 ADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKD 225 (1100)
Q Consensus 148 ~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~ 225 (1100)
.... ... ..+..|. ..|.++.| ++.++++++.||.|++|| .+.. .....|
T Consensus 90 ~~~~~~~~---~~~~~~~------------~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~------- 141 (313)
T 3odt_A 90 ATSGEDPL---YTLIGHQ------------GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAH------- 141 (313)
T ss_dssp CCTTSCC----CEECCCS------------SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECC-------
T ss_pred ecCCCCcc---cchhhcc------------cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccC-------
Confidence 5321 222 2355554 88999999 355799999999999999 4443 344445
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
...|.+++|..+++..+++++.||.|++||.... ..
T Consensus 142 -----------------------~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~-------- 177 (313)
T 3odt_A 142 -----------------------NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-------------IK-------- 177 (313)
T ss_dssp -----------------------SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------------EE--------
T ss_pred -----------------------CCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------------EE--------
Confidence 7889999998459999999999999999983200 00
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
.+ . ..
T Consensus 178 ------~~--~------~~------------------------------------------------------------- 182 (313)
T 3odt_A 178 ------TF--S------GI------------------------------------------------------------- 182 (313)
T ss_dssp ------EE--C------SS-------------------------------------------------------------
T ss_pred ------EE--e------cc-------------------------------------------------------------
Confidence 00 0 00
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
+...+
T Consensus 183 -----------------------------------------------~~~~i---------------------------- 187 (313)
T 3odt_A 183 -----------------------------------------------HNDVV---------------------------- 187 (313)
T ss_dssp -----------------------------------------------CSSCE----------------------------
T ss_pred -----------------------------------------------CcccE----------------------------
Confidence 00000
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
..+++++++. +++|+.||.|++||+..+.+. ..+.+|..+|++++|+
T Consensus 188 ---------------------~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 188 ---------------------RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL-----------RTYEGHESFVYCIKLL 234 (313)
T ss_dssp ---------------------EEEEEEETTE-EEEEETTSEEEEEETTTCCEE-----------EEEECCSSCEEEEEEC
T ss_pred ---------------------EEEEEcCCCe-EEEccCCCeEEEEECCchhhh-----------hhhhcCCceEEEEEEe
Confidence 1113445665 889999999999999987754 3466888999999999
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCc
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECG 625 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG 625 (1100)
|++ .|++++.||.|++|++... .+...+..|..+|++++|+|+++ +++|+.||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENG-------------------------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTC-------------------------CEEEEEECSSSCEEEEEECTTSC-EEEEETTS
T ss_pred cCC-CEEEEecCCEEEEEECCCC-------------------------ceeEEEeccCceEEEEEEccCCC-EEEEeCCC
Confidence 999 6899999999999998775 24567788999999999999998 66799999
Q ss_pred eEEEEecCCceEE
Q 001321 626 RVAVLDMNLLSVL 638 (1100)
Q Consensus 626 ~V~vwD~~~~~~~ 638 (1100)
.|++||+++++.+
T Consensus 288 ~i~iw~~~~~~~~ 300 (313)
T 3odt_A 288 LVRIFSQEKSRWA 300 (313)
T ss_dssp CEEEEESCGGGCC
T ss_pred cEEEEeCCCCcee
Confidence 9999999987665
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=6.9e-28 Score=280.04 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=167.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-------EEEeCCCCCCEEEEEEEeC----C---CEEEEEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQN----Q---GFLISIT 95 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-------~~~~~~h~~~V~~l~fs~d----~---~~Lls~s 95 (1100)
...||.+.|.+++|+| ++||+|+.||.|+||+....+ ......|..+|.+++|+|+ + .+|++++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 3458999999999999 899999999999999996655 6667789999999999999 9 9999999
Q ss_pred CCCcEEEEEcCCCce-----eeee-ec-----CCCeEEEEEe----cCCCE-EEEEeCCCcEEEEEEec------CCCee
Q 001321 96 NDNEIQVWSLESRSL-----ACCL-KW-----ESNITAFSVI----SGSHF-MYIGDENGLMSVIKYDA------DEGKL 153 (1100)
Q Consensus 96 ~d~~I~vWd~~s~~~-----l~~~-~~-----~~~Vt~~~~s----~~~~~-l~~G~~dG~V~Iw~~d~------~~~~l 153 (1100)
.|+.|++||+.+++. +..+ .+ ...|++++|+ |++.+ +++|+.+|.|++|++.. .....
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 999999999998875 5555 55 4889999999 99999 99999999999999985 22111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec----CCcccccccccC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG----GKDLQLKDGVVD 229 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~----~~~~~~~~~l~~ 229 (1100)
......+.+ .......+...|.+++|+| ++ ++++++.||.|++||+.+++.+..+. | ...
T Consensus 169 ~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h-------~~~- 232 (397)
T 1sq9_A 169 WSPTLELQG-----TVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM-------INN- 232 (397)
T ss_dssp CCCEEEEEE-----EECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC----------CC-
T ss_pred ccCcceeee-----eeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc-------ccc-
Confidence 000001211 0001112237899999988 56 89999999999999999987765432 1 000
Q ss_pred CCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC---CcEEEEecCCC
Q 001321 230 SPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID---GDILLWNTSTT 282 (1100)
Q Consensus 230 ~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D---G~I~lWd~~~~ 282 (1100)
...|.+++|. |++.+|++++.| |.|++||+.++
T Consensus 233 -------------------~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 233 -------------------SNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp -------------------CCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred -------------------CCccceEEEC-CCCCEEEEEecCCCCceEEEEECCCC
Confidence 5679999985 999999999999 99999998754
No 71
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=8.1e-28 Score=278.46 Aligned_cols=164 Identities=10% Similarity=0.153 Sum_probs=138.0
Q ss_pred EeCCCCCCEEEEEEEeCC-CEEEEEECCCcEEEEEcCCCceeeee---ecCCCeEEEEEec-CCCEEEEEeCCCcEEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQ-GFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVIS-GSHFMYIGDENGLMSVIK 145 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~-~~Lls~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~-~~~~l~~G~~dG~V~Iw~ 145 (1100)
...+|..+|.+++|+|++ .+|++++.|+.|++||+.+++....+ .|.+.|++++|+| ++.++++|+.||.|++|+
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 457899999999999998 89999999999999999998877666 4889999999999 679999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKD 225 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~ 225 (1100)
+.. ..+.. +..+. .+...|.+++|+| ++.+|++++.||.|++||+....+....+|
T Consensus 148 ~~~--~~~~~----~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h------- 203 (383)
T 3ei3_B 148 FSG--SVIQV----FAKTD---------SWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLDGHEIFKEKLH------- 203 (383)
T ss_dssp TTS--CEEEE----EECCC---------CSSCCEEEEEEET--TTTEEEEEETTSEEEEEETTSCEEEEEECS-------
T ss_pred CCC--CceEE----EeccC---------CCCCCeEEEEECC--CCCEEEEECCCCCEEEEECCCCEEEEeccC-------
Confidence 873 22221 22111 1127799999988 688899999999999999976666666666
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEEecCCC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.+++|. |++. ++++++.||.|++||+.+.
T Consensus 204 -----------------------~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~ 237 (383)
T 3ei3_B 204 -----------------------KAKVTHAEFN-PRCDWLMATSSVDATVKLWDLRNI 237 (383)
T ss_dssp -----------------------SSCEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGC
T ss_pred -----------------------CCcEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCC
Confidence 7889999996 9998 9999999999999998643
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=4.4e-27 Score=278.37 Aligned_cols=318 Identities=16% Similarity=0.229 Sum_probs=247.4
Q ss_pred EEEeCCCCCCE-EEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEE
Q 001321 69 GLLISPSQLPY-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 69 ~~~~~~h~~~V-~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~ 146 (1100)
...+.+|...| .+ +.+++.+|++++.|++|++||+.+++.+..+ .|.+.|++++++ ++++++|+.||+|++|++
T Consensus 111 ~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 111 PKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34566788765 54 5556889999999999999999999988777 688899999998 679999999999999998
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEE-EecCCcccccc
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIF-VGGGKDLQLKD 225 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~ 225 (1100)
+. ++.. ..+.+|. ..|.++.|+ +..+++++.||.|++||+.+++... ..+|
T Consensus 187 ~~--~~~~---~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------- 238 (445)
T 2ovr_B 187 ET--GECI---HTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGH------- 238 (445)
T ss_dssp TT--TEEE---EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECC-------
T ss_pred Cc--CcEE---EEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-------
Confidence 64 4444 3366665 889999994 4569999999999999999987654 4445
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAE 305 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (1100)
...|.+++| ++..+++|+.||.|++||+.++. .+
T Consensus 239 -----------------------~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~-----------~~--------- 272 (445)
T 2ovr_B 239 -----------------------VAAVRCVQY---DGRRVVSGAYDFMVKVWDPETET-----------CL--------- 272 (445)
T ss_dssp -----------------------SSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTE-----------EE---------
T ss_pred -----------------------cccEEEEEE---CCCEEEEEcCCCEEEEEECCCCc-----------Ee---------
Confidence 778999986 68899999999999999985430 00
Q ss_pred CCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCC
Q 001321 306 RRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVG 385 (1100)
Q Consensus 306 ~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~ 385 (1100)
..+ . +
T Consensus 273 -----~~~---------~---------~---------------------------------------------------- 277 (445)
T 2ovr_B 273 -----HTL---------Q---------G---------------------------------------------------- 277 (445)
T ss_dssp -----EEE---------C---------C----------------------------------------------------
T ss_pred -----EEe---------c---------C----------------------------------------------------
Confidence 000 0 0
Q ss_pred CCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhcccc
Q 001321 386 NHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLH 465 (1100)
Q Consensus 386 ~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1100)
+...+++.
T Consensus 278 -----------------------------------------------~~~~v~~~------------------------- 285 (445)
T 2ovr_B 278 -----------------------------------------------HTNRVYSL------------------------- 285 (445)
T ss_dssp -----------------------------------------------CSSCEEEE-------------------------
T ss_pred -----------------------------------------------CCCceEEE-------------------------
Confidence 00000000
Q ss_pred CCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEe
Q 001321 466 SSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFC 545 (1100)
Q Consensus 466 ~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafs 545 (1100)
.+ +++.+++|+.||+|++||+..+.+. ..+.+|...+.++++
T Consensus 286 ------------------------~~--~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~- 327 (445)
T 2ovr_B 286 ------------------------QF--DGIHVVSGSLDTSIRVWDVETGNCI-----------HTLTGHQSLTSGMEL- 327 (445)
T ss_dssp ------------------------EE--CSSEEEEEETTSCEEEEETTTCCEE-----------EEECCCCSCEEEEEE-
T ss_pred ------------------------EE--CCCEEEEEeCCCeEEEEECCCCCEE-----------EEEcCCcccEEEEEE-
Confidence 11 4458999999999999999988755 346688888998877
Q ss_pred eCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEee---cCcCeEEEEEcCCCCEEEEEe
Q 001321 546 FINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSL---VNSPVRALQFTSSGAKLAVGF 622 (1100)
Q Consensus 546 pd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---h~~~VtsLafSp~g~~LavGs 622 (1100)
++.+|++|+.||.|++|++.... ++..+.. |.++|++++|+ +++|++|+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 379 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQ-------------------------CLQTLQGPNKHQSAVTCLQFN--KNFVITSS 379 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCC-------------------------EEEEECSTTSCSSCEEEEEEC--SSEEEEEE
T ss_pred -eCCEEEEEeCCCeEEEEECCCCc-------------------------EEEEEccCCCCCCCEEEEEEC--CCEEEEEe
Confidence 46799999999999999997641 3445554 88999999996 57899999
Q ss_pred CCceEEEEecCCceEEEEeecC--CCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEeccee----EEE
Q 001321 623 ECGRVAVLDMNLLSVLFFTDDI--SGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAK----ISI 696 (1100)
Q Consensus 623 ~dG~V~vwD~~~~~~~~~~~~~--~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~----v~v 696 (1100)
.||.|++||+.+++.+...... .+|.+.|.+++|++. ..+|++|+.||+ |.+
T Consensus 380 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------------------~~~la~~~~dg~~~~~l~v 437 (445)
T 2ovr_B 380 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT----------------------KLVCAVGSRNGTEETKLLV 437 (445)
T ss_dssp TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS----------------------EEEEEEECSSSSSCCEEEE
T ss_pred CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC----------------------EEEEEEcccCCCCccEEEE
Confidence 9999999999999887555322 258899999999844 356999999998 999
Q ss_pred EeC
Q 001321 697 VGG 699 (1100)
Q Consensus 697 ~d~ 699 (1100)
||-
T Consensus 438 ~df 440 (445)
T 2ovr_B 438 LDF 440 (445)
T ss_dssp EEC
T ss_pred EEC
Confidence 993
No 73
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-29 Score=299.22 Aligned_cols=335 Identities=11% Similarity=0.085 Sum_probs=225.7
Q ss_pred CCCCCEEEEEEEeCC---------CEEEE-------------------EECCCcEEEEEcCCCcee----eee-ecCCCe
Q 001321 74 PSQLPYKNLEFLQNQ---------GFLIS-------------------ITNDNEIQVWSLESRSLA----CCL-KWESNI 120 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~---------~~Lls-------------------~s~d~~I~vWd~~s~~~l----~~~-~~~~~V 120 (1100)
.+.++|.+|+|+|++ .+|++ ++.|++|+|||+.+++.. ..+ .+.+.|
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V 210 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV 210 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence 356788888888876 56665 446789999999887642 223 456889
Q ss_pred EEEEEecC------CCEEEEEeCCCcEEEEEEecCCCe------eeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 121 TAFSVISG------SHFMYIGDENGLMSVIKYDADEGK------LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 121 t~~~~s~~------~~~l~~G~~dG~V~Iw~~d~~~~~------l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.+++|+|+ +.+||+|+.||+|+||++...... +......+.+|. ..|.+++|+|
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~------------~~v~sv~~s~-- 276 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD------------SLITTFDFLS-- 276 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT------------TCEEEEEESS--
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC------------CCEEEEEecC--
Confidence 99999997 579999999999999998753211 000002234443 8899999987
Q ss_pred CCCEEEEEEcCCEEEEEEccCCE-E-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE-EecCCC-CE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQ-I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC-WASSSG-SI 264 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~-~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~-w~spdg-~~ 264 (1100)
++ +|++|+.||+|++||+.++. . ....+| ...|.+++ +++|+| .+
T Consensus 277 ~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H------------------------------~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 277 PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH------------------------------DSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp SS-EEEEEETTSEEEEEETTBCSSCSEEEECS------------------------------SSCEEEEEEECCTTSCCE
T ss_pred CC-eEEEEeCCCEEEEEECCCCCCceEEeecc------------------------------cccEEEEEEEcCCCCCeE
Confidence 33 69999999999999998763 2 234555 78899994 345888 89
Q ss_pred EEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEE
Q 001321 265 LAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLT 344 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~lt 344 (1100)
|++|+.||+|++||+.++... . .+ .+...
T Consensus 326 laS~S~D~tvklWD~~~~~~~-----------~--------------~~------------------~~~~~-------- 354 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATT-----------K--------------TT------------------VSRFR-------- 354 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHH-----------C--------------EE------------------EEECS--------
T ss_pred EEEeccCCeEEEEECCCCCcc-----------c--------------cc------------------ccccc--------
Confidence 999999999999998533000 0 00 00000
Q ss_pred EEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCc
Q 001321 345 VLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPV 424 (1100)
Q Consensus 345 vl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~ 424 (1100)
T Consensus 355 -------------------------------------------------------------------------------- 354 (524)
T 2j04_B 355 -------------------------------------------------------------------------------- 354 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecC
Q 001321 425 EFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHD 504 (1100)
Q Consensus 425 ~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~D 504 (1100)
++ .+..++++|+++.+++++.|
T Consensus 355 -------------------------------------------------------~~---~v~~v~fsp~~~~l~s~~~d 376 (524)
T 2j04_B 355 -------------------------------------------------------GS---NLVPVVYCPQIYSYIYSDGA 376 (524)
T ss_dssp -------------------------------------------------------CC---SCCCEEEETTTTEEEEECSS
T ss_pred -------------------------------------------------------cC---cccceEeCCCcCeEEEeCCC
Confidence 00 01123577888899999999
Q ss_pred CcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCce
Q 001321 505 GSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1100)
Q Consensus 505 GtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1100)
++|++||+..+.+. ..+.+|...|++|+|+|++++||+|+.||+|+||+.......
T Consensus 377 ~tv~lwd~~~~~~~-----------~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~------------- 432 (524)
T 2j04_B 377 SSLRAVPSRAAFAV-----------HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH------------- 432 (524)
T ss_dssp SEEEEEETTCTTCC-----------EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT-------------
T ss_pred CcEEEEECcccccc-----------eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc-------------
Confidence 99999999887653 335689999999999999999999999999999997653110
Q ss_pred eeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCcc
Q 001321 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHS 664 (1100)
Q Consensus 585 ~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~ 664 (1100)
++.. ..-..+...|.+++|+|++..+. ...+..+..|+..+. .+ ..+.+|...|.+|+|++.+..
T Consensus 433 -------~~~~-~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g~-~~---~~l~gh~~~V~~Vafsp~~~~-- 497 (524)
T 2j04_B 433 -------GIKN-SSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVNDV-SK---AKIDAHGINITCTKWNETSAG-- 497 (524)
T ss_dssp -------CC-------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-----------------CCCSCCCEEECCSTTT--
T ss_pred -------cccc-CccceeeeEEEEeccCCCCCeEE-ccCCceecccccCCc-ce---eeecCCCceEEEEECCCCCCc--
Confidence 0000 00001233578999999998553 233332333332333 22 244679999999999976542
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 665 LAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
..+|++|+.||.|++|+
T Consensus 498 -----------------~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 498 -----------------GKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----------------TTEEEEECTTSEEEEEE
T ss_pred -----------------cHHHHhhccCceEEEEE
Confidence 36799999999999999
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-28 Score=288.98 Aligned_cols=202 Identities=12% Similarity=0.112 Sum_probs=165.1
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCC------ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEE
Q 001321 32 YGIPATASILAFDH-IQRLLAIATLDGRIKVIGGDG------IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS 104 (1100)
Q Consensus 32 ~G~~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~------~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd 104 (1100)
.||.+.|++++|+| ++++||+|+.||.|+||+... ........|..+|.+++|+|++.+|++++.|++|++||
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 58899999999999 999999999999999999844 22234446999999999999999999999999999999
Q ss_pred cC---CCceeeeee-------------cCCCeEEEE--EecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecc--cc
Q 001321 105 LE---SRSLACCLK-------------WESNITAFS--VISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA--DA 164 (1100)
Q Consensus 105 ~~---s~~~l~~~~-------------~~~~Vt~~~--~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~--~~ 164 (1100)
+. +++...... +...+.++. +++++.++++|+.+|.|++|++.. ++.. ..+.. |.
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~---~~~~~~~h~ 214 (437)
T 3gre_A 140 VNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--LERL---QIIENSPRH 214 (437)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT--CCEE---EEEECCGGG
T ss_pred eccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Ceee---EEEccCCCC
Confidence 95 444433221 456677777 557899999999999999999865 3333 22443 44
Q ss_pred cccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe--cCCcccccccccCCCCCCCCccccCC
Q 001321 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1100)
Q Consensus 165 ~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~g~~~ 242 (1100)
..|.+++|+| ++.+|++++.||.|++||+.+++.+..+ .|
T Consensus 215 ------------~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------ 256 (437)
T 3gre_A 215 ------------GAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD------------------------ 256 (437)
T ss_dssp ------------CCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTT------------------------
T ss_pred ------------CceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCC------------------------
Confidence 7899999988 6888999999999999999999887654 33
Q ss_pred CCCCCCCCceEEEEEe---cCCCCEEEEEEcCCcEEEEecCCC
Q 001321 243 SEHQPEEKEISALCWA---SSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 243 ~~~~~~~~~V~sl~w~---spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|++++|. +|++.+|++|+.||.|++||+.++
T Consensus 257 ------~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 257 ------HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp ------CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred ------CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 6689999764 256889999999999999999765
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=278.57 Aligned_cols=328 Identities=14% Similarity=0.138 Sum_probs=235.0
Q ss_pred CCeEEEEeCC-CceEEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcCCCceeeeee--------------cCCC
Q 001321 56 DGRIKVIGGD-GIEGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACCLK--------------WESN 119 (1100)
Q Consensus 56 dG~I~vw~~~-~~~~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s~~~l~~~~--------------~~~~ 119 (1100)
++.++||+.+ .........|..+|.+++|+| ++.+|++++.|+.|++||+.++.....+. |...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 3456777764 334456677999999999999 99999999999999999999887655443 7889
Q ss_pred eEEEEEec-CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC-CCCEEEEEE
Q 001321 120 ITAFSVIS-GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAY 197 (1100)
Q Consensus 120 Vt~~~~s~-~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~-~g~~ll~~~ 197 (1100)
|++++|+| ++.++++|+.+|.|++|+++. +..... +. +. ..+.++.|+|.. ++.++++++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~---~~-~~------------~~~~~~~~~~~~~~~~~~~~~~ 163 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADV---FN-FE------------ETVYSHHMSPVSTKHCLVAVGT 163 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEE---EE-CS------------SCEEEEEECSSCSSCCEEEEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Ccccee---cc-CC------------CceeeeEeecCCCCCcEEEEEc
Confidence 99999999 778999999999999999875 333321 22 12 678999998853 455899999
Q ss_pred cCCEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEE
Q 001321 198 ENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDIL 275 (1100)
Q Consensus 198 ~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~ 275 (1100)
.+|.|++||+.+++.... .+| ...|++++|. |++. .+++++.||.|+
T Consensus 164 ~~~~v~~~d~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 164 RGPKVQLCDLKSGSCSHILQGH------------------------------RQEILAVSWS-PRYDYILATASADSRVK 212 (408)
T ss_dssp SSSSEEEEESSSSCCCEEECCC------------------------------CSCEEEEEEC-SSCTTEEEEEETTSCEE
T ss_pred CCCeEEEEeCCCcceeeeecCC------------------------------CCcEEEEEEC-CCCCcEEEEEcCCCcEE
Confidence 999999999998865443 334 7889999986 9998 589999999999
Q ss_pred EEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccc
Q 001321 276 LWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGME 355 (1100)
Q Consensus 276 lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~ 355 (1100)
+||+.++.... ..+..... . .. .
T Consensus 213 i~d~~~~~~~~----------~~~~~~~~-----------------------~-------~~-----------------~ 235 (408)
T 4a11_B 213 LWDVRRASGCL----------ITLDQHNG-----------------------K-------KS-----------------Q 235 (408)
T ss_dssp EEETTCSSCCS----------EECCTTTT-----------------------C-------SC-----------------C
T ss_pred EEECCCCCccc----------cccccccc-----------------------c-------cc-----------------e
Confidence 99997542110 00000000 0 00 0
Q ss_pred cceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCC
Q 001321 356 NLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDP 435 (1100)
Q Consensus 356 ~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 435 (1100)
.. .
T Consensus 236 ~~---------------------------------------------------------------------~-------- 238 (408)
T 4a11_B 236 AV---------------------------------------------------------------------E-------- 238 (408)
T ss_dssp CT---------------------------------------------------------------------T--------
T ss_pred ee---------------------------------------------------------------------c--------
Confidence 00 0
Q ss_pred ceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCC
Q 001321 436 IMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYP 515 (1100)
Q Consensus 436 ~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~ 515 (1100)
....++...+..++++|+++++++++.||.|++||+..+
T Consensus 239 -----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 239 -----------------------------------------SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp -----------------------------------------TSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -----------------------------------------cccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence 000112222334467889999999999999999999887
Q ss_pred ceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCccee
Q 001321 516 VFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLC 595 (1100)
Q Consensus 516 ~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 595 (1100)
........ .. .......+........+..+++++.+|.|++|++... .+
T Consensus 278 ~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------------------~~ 326 (408)
T 4a11_B 278 ENTLVNYG--KV----CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-------------------------EQ 326 (408)
T ss_dssp CBCCCCCC--CC----CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-------------------------CE
T ss_pred ccceeccc--cc----cccccccceeEEecCCCceEEEEecCCEEEEEECcCC-------------------------cc
Confidence 64311110 00 1111123333344455667788899999999999775 25
Q ss_pred EEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEE
Q 001321 596 RAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 596 ~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~ 638 (1100)
+..+.+|.++|++++|+|++++|++|+.||.|++||+...+.+
T Consensus 327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 6777899999999999999999999999999999999988766
No 76
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.8e-28 Score=280.40 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=128.0
Q ss_pred CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC--ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 74 PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR--SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~--~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
.|.++|.+++|+|++.+|++++.|+.|++||+.++ +.+..+ .|.+.|++++|+|++++|++|+.||.|+||++....
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 46679999999999999999999999999999988 566555 678899999999999999999999999999988633
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE----EEEec-CCcccccc
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI----IFVGG-GKDLQLKD 225 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~----~~~~~-~~~~~~~~ 225 (1100)
.... ...+..|. ..|.+++|+| ++++|++++.|+.|++||+.+++. ....+ |
T Consensus 89 -~~~~-~~~~~~~~------------~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h------- 145 (377)
T 3dwl_C 89 -TWKQ-TLVLLRLN------------RAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL------- 145 (377)
T ss_dssp -CCCC-EEECCCCS------------SCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSC-------
T ss_pred -ceee-eeEecccC------------CceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-------
Confidence 0111 12344444 8899999988 677799999999999999998762 33333 4
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.+++|. |++.+|++++.||.|++||+...
T Consensus 146 -----------------------~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 146 -----------------------RSTILSLDWH-PNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp -----------------------CSCEEEEEEC-TTSSEEEEEESSSCEEEEEECCS
T ss_pred -----------------------CCCeEEEEEc-CCCCEEEEEeCCCEEEEEEEEec
Confidence 7889999986 99999999999999999998654
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=8.8e-27 Score=266.00 Aligned_cols=308 Identities=15% Similarity=0.202 Sum_probs=220.5
Q ss_pred ecCCCeEEEEEecCCC-EEEEEeC---CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC-C
Q 001321 115 KWESNITAFSVISGSH-FMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-S 189 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~-~l~~G~~---dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~-~ 189 (1100)
.|...|++++|+|++. ++++|+. ||.|+||+++.. .... .....|. .+|.+++|+|.. +
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~--~~~~--~~~~~~~------------~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG--DLKL--LREIEKA------------KPIKCGTFGATSLQ 79 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS--SEEE--EEEEEES------------SCEEEEECTTCCTT
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC--cccc--eeeeccc------------CcEEEEEEcCCCCC
Confidence 5889999999999986 4556766 999999999853 3321 1112333 789999999852 1
Q ss_pred CCEEEEEEcCCEEEEEEccCCE-E-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe-----cCCC
Q 001321 190 GNRVLIAYENALVILWDVSEAQ-I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA-----SSSG 262 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~-~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~-----spdg 262 (1100)
+.++++++.||.|++||+.+++ . ..+.+| ...|.+++|. +|++
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGH------------------------------KEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCC------------------------------SSCEEEEEEESGGGCC-CC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEec------------------------------ccceEEEeeccccccCCCc
Confidence 6779999999999999999875 3 344455 7789999653 4899
Q ss_pred CEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcce
Q 001321 263 SILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEV 342 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ 342 (1100)
.+|++++.||.|++||+.++... ...+....+ .
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~----------~~~~~~~~~-------------------------------~------ 162 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDP----------VANMEPVQG-------------------------------E------ 162 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSC----------SEEECCCTT-------------------------------S------
T ss_pred cEEEEEeCCCeEEEEeCCCCCCc----------ceeccccCC-------------------------------C------
Confidence 99999999999999998754210 000000000 0
Q ss_pred EEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCC
Q 001321 343 LTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVC 422 (1100)
Q Consensus 343 ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 422 (1100)
T Consensus 163 -------------------------------------------------------------------------------- 162 (357)
T 3i2n_A 163 -------------------------------------------------------------------------------- 162 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEe
Q 001321 423 PVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGY 502 (1100)
Q Consensus 423 ~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~ 502 (1100)
....+.+..+ ..+++++++++++|+
T Consensus 163 ----------~~~~v~~~~~---------------------------------------------~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 163 ----------NKRDCWTVAF---------------------------------------------GNAYNQEERVVCAGY 187 (357)
T ss_dssp ----------CCCCEEEEEE---------------------------------------------ECCCC-CCCEEEEEE
T ss_pred ----------CCCceEEEEE---------------------------------------------EeccCCCCCEEEEEc
Confidence 0000000010 013678888999999
Q ss_pred cCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee---CCCeEEEEecCceEEEEEecCCCCCcceeeecc
Q 001321 503 HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF---INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLE 579 (1100)
Q Consensus 503 ~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp---d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~ 579 (1100)
.||.|++||+..+.+. ....|...|++++|+| ++.+|++|+.||.|++|++........+
T Consensus 188 ~d~~i~i~d~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----- 250 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALR------------WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF----- 250 (357)
T ss_dssp TTSEEEEEETTTTEEE------------EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE-----
T ss_pred cCCeEEEEECccCcee------------eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce-----
Confidence 9999999999987743 1345678999999999 9999999999999999999875321110
Q ss_pred CCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC-EEEEEeCCceEEEEecCCceEE----------------EEee
Q 001321 580 TKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGFECGRVAVLDMNLLSVL----------------FFTD 642 (1100)
Q Consensus 580 ~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~-~LavGs~dG~V~vwD~~~~~~~----------------~~~~ 642 (1100)
....+..|..+|++++|+|++. +|++|+.||.|++||++.+... ....
T Consensus 251 ---------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 251 ---------------ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp ---------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred ---------------eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 1224568999999999999998 8999999999999999864211 1112
Q ss_pred cCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEE-EEecceeEEEEeCCCCcc
Q 001321 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII-VLFKDAKISIVGGSSENM 704 (1100)
Q Consensus 643 ~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~-~gt~dg~v~v~d~~~g~~ 704 (1100)
...+|..+|++++|++.+.. |+ +++.||.|.+||..+.+.
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~----------------------l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRG----------------------LCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSSCEEEEEECSSSTT----------------------EEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCeeEEEEcCCCCe----------------------EEEEecCCCcEEEEECCCccc
Confidence 33469999999999966544 65 899999999999766543
No 78
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.6e-29 Score=285.80 Aligned_cols=222 Identities=12% Similarity=0.112 Sum_probs=161.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc---eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~---~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
+..+.+.|.+++|+|++++||+|+.||.|+||+.... ......+|..+|.+++|+|++.+|++++.|++|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3345679999999999999999999999999999654 3345668999999999999999999999999999999999
Q ss_pred Cc----eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe-eeeeceeecc-cccccccCCCCCCCCCeEE
Q 001321 108 RS----LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK-LFQLPYNISA-DALSEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 108 ~~----~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~-l~~~~~~i~~-~~~~~~~~~~~~~~~~V~s 181 (1100)
++ ......|...|++++|+|+++++++|+.+|.|++|+++..... +. ..+.. |. ..|.+
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~h~------------~~v~~ 151 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS---KHLKRPLR------------STILS 151 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC---EEECSSCC------------SCEEE
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee---eEeecccC------------CCeEE
Confidence 87 3444478899999999999999999999999999998763210 11 22443 44 88999
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
++|+| ++.+|++++.|+.|++||+............ +-+.....+.....- .+...|.+++|. |+
T Consensus 152 ~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~v~~~~~s-p~ 216 (377)
T 3dwl_C 152 LDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-----------VWGSRLPFNTVCAEY-PSGGWVHAVGFS-PS 216 (377)
T ss_dssp EEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSC-----------SSCSCCCEEEEEECC-CCSSSEEEEEEC-TT
T ss_pred EEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCcccc-----------ccccccchhhhhhcc-cCCceEEEEEEC-CC
Confidence 99988 6888999999999999999643211100000 000000000000000 127789999985 99
Q ss_pred CCEEEEEEcCCcEEEEecCCC
Q 001321 262 GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|.+|++++.||.|++||+.++
T Consensus 217 ~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 217 GNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp SSCEEEEETTTEEC-CEECST
T ss_pred CCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999866
No 79
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=5.1e-28 Score=285.60 Aligned_cols=163 Identities=13% Similarity=0.210 Sum_probs=129.5
Q ss_pred eCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcCCCceeee---eecCCCeEEEEEec-CCCEEEEEeCCCcEEEEEE
Q 001321 72 ISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACC---LKWESNITAFSVIS-GSHFMYIGDENGLMSVIKY 146 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s~~~l~~---~~~~~~Vt~~~~s~-~~~~l~~G~~dG~V~Iw~~ 146 (1100)
..+|...|++|+|+| ++.+|++++.||+|+|||+.++..... ..|.+.|++++|+| ++.+|++|+.||+|+||++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 456888999999999 556899999999999999988754333 36889999999998 6789999999999999997
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccccccc
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDG 226 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~ 226 (1100)
.. +.+.. + ...+. ....+.+++|+| ++.+|++|+.||.|++||+.+..+..+.+|
T Consensus 195 ~~--~~~~~--~-~~~~~----------~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h-------- 249 (435)
T 4e54_B 195 KG--NILRV--F-ASSDT----------INIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDGKELWNLRMH-------- 249 (435)
T ss_dssp TS--CEEEE--E-ECCSS----------CSCCCCCEEEET--TTTEEEEECSSSBEEEEESSSCBCCCSBCC--------
T ss_pred cC--CceeE--E-eccCC----------CCccEEEEEECC--CCCEEEEEeCCCcEeeeccCcceeEEEecc--------
Confidence 63 22221 1 11111 125688999988 688899999999999999987655444444
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEEecCCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|++++|. |++. ++++|+.||.|++||+.+.
T Consensus 250 ----------------------~~~v~~v~~~-p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 250 ----------------------KKKVTHVALN-PCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp ----------------------SSCEEEEEEC-TTCSSEEEEEETTSBCCEEETTTC
T ss_pred ----------------------cceEEeeeec-CCCceEEEEecCcceeeEEecccc
Confidence 7889999986 8876 6889999999999998654
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1.3e-26 Score=290.52 Aligned_cols=292 Identities=17% Similarity=0.210 Sum_probs=220.1
Q ss_pred ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|.+.|++++++|++ ++|++|+.||+|+||++.............+.+|. ..|.+++|+| ++.+|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~------------~~v~~v~~s~--~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS------------HFVEDVVLSS--DGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCS------------SCEEEEEECT--TSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCC------------CcEEEEEECC--CCCEE
Confidence 788999999999875 79999999999999998764322211113356666 8999999988 78889
Q ss_pred EEEEcCCEEEEEEccCCEEEE-EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 194 LIAYENALVILWDVSEAQIIF-VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~-~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
++|+.||.|+|||+.++.... +.+| ...|.+++|. |++.+|++|+.||
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h------------------------------~~~v~~~~~s-~~~~~l~s~s~D~ 494 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGH------------------------------TKDVLSVAFS-LDNRQIVSASRDR 494 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECC------------------------------SSCEEEEEEC-TTSSCEEEEETTS
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCC------------------------------CCCEEEEEEe-CCCCEEEEEeCCC
Confidence 999999999999999987654 4566 7889999985 9999999999999
Q ss_pred cEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCcc
Q 001321 273 DILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSS 352 (1100)
Q Consensus 273 ~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~ 352 (1100)
+|++||..... .. .+ . . .+..
T Consensus 495 ~i~iwd~~~~~------------~~--------------~~--~------~---------~~~~---------------- 515 (694)
T 3dm0_A 495 TIKLWNTLGEC------------KY--------------TI--S------E---------GGEG---------------- 515 (694)
T ss_dssp CEEEECTTSCE------------EE--------------EE--C------S---------STTS----------------
T ss_pred EEEEEECCCCc------------ce--------------ee--c------c---------CCCC----------------
Confidence 99999864210 00 00 0 0 0000
Q ss_pred ccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCccccc
Q 001321 353 GMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPI 432 (1100)
Q Consensus 353 ~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 432 (1100)
T Consensus 516 -------------------------------------------------------------------------------- 515 (694)
T 3dm0_A 516 -------------------------------------------------------------------------------- 515 (694)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCC--cEEEEEecCCcEEEe
Q 001321 433 SDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVD--RVYLAGYHDGSVRIW 510 (1100)
Q Consensus 433 ~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~--~~l~Tg~~DGtIriW 510 (1100)
|...++ ++++++++ .++++|+.||+|+||
T Consensus 516 h~~~v~-------------------------------------------------~~~~~~~~~~~~l~s~s~d~~v~vw 546 (694)
T 3dm0_A 516 HRDWVS-------------------------------------------------CVRFSPNTLQPTIVSASWDKTVKVW 546 (694)
T ss_dssp CSSCEE-------------------------------------------------EEEECSCSSSCEEEEEETTSCEEEE
T ss_pred CCCcEE-------------------------------------------------EEEEeCCCCcceEEEEeCCCeEEEE
Confidence 000111 11233332 479999999999999
Q ss_pred eCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCC
Q 001321 511 DATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEG 590 (1100)
Q Consensus 511 d~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~ 590 (1100)
|+....+. ..+.+|...|++++|+|++++|++|+.||.|+||++....
T Consensus 547 d~~~~~~~-----------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~--------------------- 594 (694)
T 3dm0_A 547 NLSNCKLR-----------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--------------------- 594 (694)
T ss_dssp ETTTCCEE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE---------------------
T ss_pred ECCCCcEE-----------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------
Confidence 99887755 4577899999999999999999999999999999998751
Q ss_pred CcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC----------------CCCCCeEEE
Q 001321 591 KISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS----------------GSSSPIISM 654 (1100)
Q Consensus 591 ~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~----------------~~~~~V~sl 654 (1100)
++..+ .+...|++++|+|++.+|++++++ .|+|||++++.++....... .+.-.|+++
T Consensus 595 ----~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 595 ----KLYSL-EANSVIHALCFSPNRYWLCAATEH-GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp ----EEECC-BCSSCEEEEEECSSSSEEEEEETT-EEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred ----eEEEe-cCCCcEEEEEEcCCCcEEEEEcCC-CEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 22222 356789999999999988888765 49999999998875432211 112247889
Q ss_pred EEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 655 TWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 655 ~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
+|++++ .+|++|+.||.|++||.
T Consensus 669 ~~spdg----------------------~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 669 NWSADG----------------------STLFSGYTDGVIRVWGI 691 (694)
T ss_dssp EECTTS----------------------SEEEEEETTSEEEEEEC
T ss_pred EEcCCC----------------------CEEEEEcCCCeEEEEec
Confidence 998655 44999999999999994
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-26 Score=256.34 Aligned_cols=194 Identities=20% Similarity=0.198 Sum_probs=160.1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC--
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-- 108 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-- 108 (1100)
.||.+.|++++| |++++||+|+.||.|+||+....+ ......|..+|.+++|+|++.+|++++.|+.|++|++...
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 589999999999 999999999999999999996554 4466788999999999999999999999999999998765
Q ss_pred -ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 109 -SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 109 -~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
+.+..+ .|...|+++++ +++++++|+.+|.|++|+ .+... ..+..|. ..|.++.|+|
T Consensus 94 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d----~~~~~---~~~~~~~------------~~v~~~~~~~ 152 (313)
T 3odt_A 94 EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK----EGSLV---YNLQAHN------------ASVWDAKVVS 152 (313)
T ss_dssp SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE----TTEEE---EEEECCS------------SCEEEEEEEE
T ss_pred CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc----CCcEE---EecccCC------------CceeEEEEcc
Confidence 333333 67889999999 577999999999999998 23333 2355555 8899999988
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCEEEEEe-c-CCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 187 NSSGNRVLIAYENALVILWDVSEAQIIFVG-G-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~-~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
. ++.++++++.||.|++|| ..+....+ . | ...|.+++|. |++.
T Consensus 153 ~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~------------------------------~~~i~~~~~~-~~~~- 197 (313)
T 3odt_A 153 F-SENKFLTASADKTIKLWQ--NDKVIKTFSGIH------------------------------NDVVRHLAVV-DDGH- 197 (313)
T ss_dssp T-TTTEEEEEETTSCEEEEE--TTEEEEEECSSC------------------------------SSCEEEEEEE-ETTE-
T ss_pred C-CCCEEEEEECCCCEEEEe--cCceEEEEeccC------------------------------cccEEEEEEc-CCCe-
Confidence 5 566799999999999999 33333322 2 3 7789999986 8888
Q ss_pred EEEEEcCCcEEEEecCCC
Q 001321 265 LAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1100)
+++++.||.|++||+.++
T Consensus 198 ~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 198 FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp EEEEETTSEEEEEETTTC
T ss_pred EEEccCCCeEEEEECCch
Confidence 999999999999998644
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=286.11 Aligned_cols=194 Identities=10% Similarity=0.070 Sum_probs=148.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
|--+...|.+++|+|||+++|+|+.|+.|+ +....+.+ .+|...|.+++|+|+| .++.+.+|+.+....
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~ 79 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL 79 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCCCceE
Confidence 344567899999999999999999999999 65433333 6899999999999998 677777777654444
Q ss_pred eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
+ ...+...|++++|+|++.++|+++.+|.|+||+.+. +.. .+. |.. ......|.+++|+| +|
T Consensus 80 ~-~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~---~l~-~~~-------~~~~~sv~svafSP--DG 141 (588)
T 2j04_A 80 L-NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLT---NLD-SKG-------NLSSRTYHCFEWNP--IE 141 (588)
T ss_dssp S-TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEE---ECC-CSS-------CSTTTCEEEEEECS--SS
T ss_pred e-ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eee---ecc-CCC-------ccccccEEEEEEcC--CC
Confidence 3 334478899999999999999999999999998432 221 133 320 00013699999998 78
Q ss_pred CEEEEEEcCCEEEEEEccCCEE--------EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 191 NRVLIAYENALVILWDVSEAQI--------IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~~--------~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
++|++|+.||+|++||+.++.+ ..+..|. ..+...|.+++|. |+|
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~--------------------------~gh~~~V~sVawS-Pdg 194 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD--------------------------AGSKDWVTHIVWY-EDV 194 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC--------------------------TTCCCCEEEEEEE-TTE
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc--------------------------ccccccEEEEEEc-CCc
Confidence 8899999999999999998742 2332220 0016789999996 999
Q ss_pred CEEEEEEcCCcEEEEecCCC
Q 001321 263 SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 263 ~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+++++.|+++++||+.++
T Consensus 195 --Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 195 --LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp --EEEEETTCCEEEECCCSS
T ss_pred --EEEEeCCCeEEEEECCCC
Confidence 889999999999998644
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=3e-26 Score=269.08 Aligned_cols=283 Identities=16% Similarity=0.214 Sum_probs=213.9
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
.+..|+|++++ +++++.|++|+|||+.++++...+ .|...|+|++|+|++++|++|+.||+|+||++.. ++..
T Consensus 107 y~~~l~wS~~n--~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRL 182 (420)
T ss_dssp TCBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEE
T ss_pred cceeEEECCCC--EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcEE
Confidence 46789999874 555666999999999999887766 4556799999999999999999999999999864 4444
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCC--EEEEEecCCcccccccccCCCC
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~--~~~~~~~~~~~~~~~~l~~~~~ 232 (1100)
..+.+|. ..|.++.++ +..+++|+.|+.+++||.... .+....+|
T Consensus 183 ---~~~~~h~------------~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h-------------- 229 (420)
T 4gga_A 183 ---RNMTSHS------------ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGH-------------- 229 (420)
T ss_dssp ---EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC--------------
T ss_pred ---EEEeCCC------------CceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEeccc--------------
Confidence 3366665 889999984 557999999999999998875 33445556
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEE
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIV 312 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 312 (1100)
...+..+.|. |+|.++++++.||.+++|+..+++.... .. ..
T Consensus 230 ----------------~~~~~~~~~~-~~g~~l~s~~~D~~v~i~~~~~~~~~~~-------~~--------------~~ 271 (420)
T 4gga_A 230 ----------------SQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV-------PL--------------QT 271 (420)
T ss_dssp ----------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCCSSCSC-------CS--------------EE
T ss_pred ----------------ccceeeeeec-CCCCeeeeeeccccceEEeeccccccce-------ee--------------ee
Confidence 7789999986 9999999999999999999875521110 00 00
Q ss_pred EEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEE
Q 001321 313 LHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLF 392 (1100)
Q Consensus 313 ~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~ 392 (1100)
. ......+..+.+.|
T Consensus 272 ~---------------------------------------------------~~~~~~V~~~~~~p-------------- 286 (420)
T 4gga_A 272 F---------------------------------------------------TQHQGAVKAVAWCP-------------- 286 (420)
T ss_dssp E---------------------------------------------------CCCSSCEEEEEECT--------------
T ss_pred e---------------------------------------------------cccCCceeeeeeCC--------------
Confidence 0 00000011111111
Q ss_pred EEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccC
Q 001321 393 VLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAG 472 (1100)
Q Consensus 393 vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1100)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 4gga_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCcccccCccccCCCCcEEEE--EecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCe
Q 001321 473 HIKWPLSGGVPSPVPITKCHSVDRVYLA--GYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS 550 (1100)
Q Consensus 473 ~~~~pl~GG~~~~~~~~~~s~~~~~l~T--g~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~ 550 (1100)
.+..++++ |+.||+|+|||+.++.+. ..+. +...|.++.|+++++.
T Consensus 287 --------------------~~~~~la~~~gs~D~~I~iwd~~t~~~~-----------~~~~-~~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 287 --------------------WQSNVLATGGGTSDRHIRIWNVCSGACL-----------SAVD-AHSQVCSILWSPHYKE 334 (420)
T ss_dssp --------------------TCTTEEEEEECTTTCEEEEEETTTTEEE-----------EEEE-CSSCEEEEEEETTTTE
T ss_pred --------------------CcccEEEEEeecCCCEEEEEeCCccccc-----------eeec-cccceeeeeecCCCCe
Confidence 11224444 568999999999988755 2222 2357999999999999
Q ss_pred EEEEe--cCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEE
Q 001321 551 LAVGN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVA 628 (1100)
Q Consensus 551 Lasg~--~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~ 628 (1100)
|++++ .||.|+||++.+. .++..+.+|.++|++|+|+|+|++||+|+.||+|+
T Consensus 335 lv~~sg~~d~~I~iwd~~~~-------------------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM-------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred EEEEEecCCCEEEEEECCCC-------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Confidence 98876 6899999998764 25678899999999999999999999999999999
Q ss_pred EEecCCceE
Q 001321 629 VLDMNLLSV 637 (1100)
Q Consensus 629 vwD~~~~~~ 637 (1100)
|||+.....
T Consensus 390 iWdv~~~~~ 398 (420)
T 4gga_A 390 LWRCFELDP 398 (420)
T ss_dssp EECCSCSSC
T ss_pred EEECCCCCc
Confidence 999986543
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.4e-26 Score=258.32 Aligned_cols=268 Identities=14% Similarity=0.166 Sum_probs=191.8
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|.+.|++++|+|++++|++|+.||+|+||+++....+.. ..+.+|. ++|.+++|+|..++++|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~---~~l~gH~------------~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCC---EEECCCS------------SCEEEEEECCGGGCSEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEE---EEEcccc------------CCeEEEEecCCCcCCEEE
Confidence 6888999999999999999999999999999875333333 3467776 899999997644578899
Q ss_pred EEEcCCEEEEEEccCCE---EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC--CCEEEEEE
Q 001321 195 IAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~---~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd--g~~l~sg~ 269 (1100)
+++.|++|++||+.+++ +....+| ...|.+++|. |+ |.+|++++
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h------------------------------~~~v~~v~~~-p~~~g~~l~s~s 120 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPMLLVAS 120 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecC------------------------------CCceeEEEeC-cCCCCcEEEEEE
Confidence 99999999999998863 2233344 7789999996 87 89999999
Q ss_pred cCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001321 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1100)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~ 349 (1100)
.||.|++||+.++.... .. .+ .+
T Consensus 121 ~d~~v~~wd~~~~~~~~---------~~--------------~~------------------~~---------------- 143 (297)
T 2pm7_B 121 SDGKVSVVEFKENGTTS---------PI--------------II------------------DA---------------- 143 (297)
T ss_dssp TTSEEEEEEBCSSSCBC---------CE--------------EE------------------EC----------------
T ss_pred CCCcEEEEEecCCCcee---------ee--------------ee------------------ec----------------
Confidence 99999999986431000 00 00 00
Q ss_pred CccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcc
Q 001321 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1100)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~ 429 (1100)
....+..+.+.|... .
T Consensus 144 -----------------h~~~v~~~~~~p~~~----------------------~------------------------- 159 (297)
T 2pm7_B 144 -----------------HAIGVNSASWAPATI----------------------E------------------------- 159 (297)
T ss_dssp -----------------CSSCEEEEEECCCC-------------------------------------------------
T ss_pred -----------------ccCccceEeecCCcc----------------------c-------------------------
Confidence 000111112222100 0
Q ss_pred cccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEE
Q 001321 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1100)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIri 509 (1100)
..+.. ...+++++|++|+.||+|+|
T Consensus 160 ------------------------------------------------~~~~~-------~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 160 ------------------------------------------------EDGEH-------NGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp -----------------------------------------------------------------CCEEEEEETTSCEEE
T ss_pred ------------------------------------------------ccccC-------CCCCCcceEEEEcCCCcEEE
Confidence 00000 01234568999999999999
Q ss_pred eeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC---CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceee
Q 001321 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN---SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1100)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~---~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1100)
||+..+..... ....+.+|...|++++|+|++ .+||+|+.||.|+||++......
T Consensus 185 wd~~~~~~~~~-------~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--------------- 242 (297)
T 2pm7_B 185 WKYNSDAQTYV-------LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--------------- 242 (297)
T ss_dssp EEEETTTTEEE-------EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---------------
T ss_pred EEEcCCCceEE-------EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc---------------
Confidence 99876542100 013477899999999999985 89999999999999999764211
Q ss_pred ccCCCcceeEEEE--eecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 587 LPEGKISLCRAVF--SLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 587 i~~~~~~~~~~~~--~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
.....+ ..|...|.+++|+|+|++||+|+.||+|+||+..
T Consensus 243 -------~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 -------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -------CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -------cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 011122 4678899999999999999999999999999976
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=4.8e-26 Score=267.36 Aligned_cols=192 Identities=18% Similarity=0.301 Sum_probs=154.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE---EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
.++|+||++ ++||+|. |+.|+|||....++. ...+|...|++|+|+|+|.+|++++.|++|++||+.+++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 467999975 6999987 899999999765443 33468889999999999999999999999999999999988777
Q ss_pred -ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 -~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|...|.+++++ +.++++|+.++.+++|+.......+. .+.+|. ..+..+.|+| ++.++
T Consensus 186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~----~~~~h~------------~~~~~~~~~~--~g~~l 245 (420)
T 4gga_A 186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHS------------QEVCGLRWAP--DGRHL 245 (420)
T ss_dssp CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCS------------SCEEEEEECT--TSSEE
T ss_pred eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE----Eecccc------------cceeeeeecC--CCCee
Confidence 677889888775 67999999999999998775433332 255555 8899999988 68889
Q ss_pred EEEEcCCEEEEEEccCCEE-----EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEE
Q 001321 194 LIAYENALVILWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAV 267 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~-----~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~s 267 (1100)
++++.|+.|++|++.+++. .....| ...|.+++|. |++. .+++
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~------------------------------~~~V~~~~~~-p~~~~~la~ 294 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQH------------------------------QGAVKAVAWC-PWQSNVLAT 294 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCC------------------------------SSCEEEEEEC-TTCTTEEEE
T ss_pred eeeeccccceEEeeccccccceeeeeeccc------------------------------CCceeeeeeC-CCcccEEEE
Confidence 9999999999999987642 222223 7789999986 7654 5554
Q ss_pred E--EcCCcEEEEecCCC
Q 001321 268 G--YIDGDILLWNTSTT 282 (1100)
Q Consensus 268 g--~~DG~I~lWd~~~~ 282 (1100)
+ +.|+.|++||+.++
T Consensus 295 ~~gs~D~~I~iwd~~t~ 311 (420)
T 4gga_A 295 GGGTSDRHIRIWNVCSG 311 (420)
T ss_dssp EECTTTCEEEEEETTTT
T ss_pred EeecCCCEEEEEeCCcc
Confidence 3 57999999998754
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=2e-26 Score=268.75 Aligned_cols=290 Identities=13% Similarity=0.144 Sum_probs=217.5
Q ss_pred EEEeCCCCCC--EEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee--cCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001321 69 GLLISPSQLP--YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVI 144 (1100)
Q Consensus 69 ~~~~~~h~~~--V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~--~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw 144 (1100)
++-..+|... +..+.|++ ..+++++.|+.|++||+.+++...... +...|++++|+|++.++++|+.+|.|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEE
Confidence 3334455554 44555554 558899999999999999998877664 57899999999999999999999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC-CE-EEEEecCCccc
Q 001321 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQ-IIFVGGGKDLQ 222 (1100)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~-~~-~~~~~~~~~~~ 222 (1100)
++.. ++.. ..+.+|. ..|.++.|+ +..+++++.||.|++||+.. .. .....+|
T Consensus 162 d~~~--~~~~---~~~~~~~------------~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 216 (401)
T 4aez_A 162 DVES--QTKL---RTMAGHQ------------ARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGH---- 216 (401)
T ss_dssp ETTT--CCEE---EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECC----
T ss_pred ECcC--CeEE---EEecCCC------------CceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCC----
Confidence 9864 3333 2355555 889999994 45799999999999999984 33 3445555
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeecc
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELS 302 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~ 302 (1100)
...|++++|. |++.+|++|+.||.|++||+.++. ...
T Consensus 217 --------------------------~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~-----------~~~----- 253 (401)
T 4aez_A 217 --------------------------SSEVCGLAWR-SDGLQLASGGNDNVVQIWDARSSI-----------PKF----- 253 (401)
T ss_dssp --------------------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCSS-----------EEE-----
T ss_pred --------------------------CCCeeEEEEc-CCCCEEEEEeCCCeEEEccCCCCC-----------ccE-----
Confidence 7889999996 999999999999999999986431 000
Q ss_pred ccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCC
Q 001321 303 SAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGA 382 (1100)
Q Consensus 303 ~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~ 382 (1100)
.+ . + ....+
T Consensus 254 ---------~~---------~---------~---------------------------------~~~~v----------- 262 (401)
T 4aez_A 254 ---------TK---------T---------N---------------------------------HNAAV----------- 262 (401)
T ss_dssp ---------EE---------C---------C---------------------------------CSSCC-----------
T ss_pred ---------Ee---------c---------C---------------------------------CcceE-----------
Confidence 00 0 0 00001
Q ss_pred CCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhc
Q 001321 383 TVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFT 462 (1100)
Q Consensus 383 ~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1100)
T Consensus 263 -------------------------------------------------------------------------------- 262 (401)
T 4aez_A 263 -------------------------------------------------------------------------------- 262 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccCcccccccCCcccccCccccCCC-CcEEEEEe--cCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCe
Q 001321 463 KLHSSHTQAGHIKWPLSGGVPSPVPITKCHSV-DRVYLAGY--HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPV 539 (1100)
Q Consensus 463 ~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~-~~~l~Tg~--~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~V 539 (1100)
..++++|+ ..++++|+ .||.|++||+..+.+. ..+ .|...|
T Consensus 263 ------------------------~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----------~~~-~~~~~v 306 (401)
T 4aez_A 263 ------------------------KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----------NTV-DAGSQV 306 (401)
T ss_dssp ------------------------CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----------EEE-ECSSCE
T ss_pred ------------------------EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----------EEE-eCCCcE
Confidence 11133343 24677765 7999999999887654 112 245689
Q ss_pred eEEEEeeCCCeEEEE--ecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCE
Q 001321 540 STLSFCFINSSLAVG--NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAK 617 (1100)
Q Consensus 540 t~lafspd~~~Lasg--~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~ 617 (1100)
++++|+|++++|+++ +.||.|++|++..... .....+.+|.++|++++|+|+|.+
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~s~dg~~ 363 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-----------------------TKQVDIPAHDTRVLYSALSPDGRI 363 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-----------------------EEEEEEECCSSCCCEEEECTTSSE
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccc-----------------------eeEEEecCCCCCEEEEEECCCCCE
Confidence 999999999999994 4899999999987421 133456789999999999999999
Q ss_pred EEEEeCCceEEEEecCCceEE
Q 001321 618 LAVGFECGRVAVLDMNLLSVL 638 (1100)
Q Consensus 618 LavGs~dG~V~vwD~~~~~~~ 638 (1100)
|++|+.||.|++||+.+++.+
T Consensus 364 l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 364 LSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEECTTSEEEEEECCC----
T ss_pred EEEEeCCCcEEEEECCCCccc
Confidence 999999999999999988776
No 87
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.7e-26 Score=262.23 Aligned_cols=289 Identities=12% Similarity=0.133 Sum_probs=218.7
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc----eeeeeecCCCeEEEEEecCCC-EEEEEeCCCcEEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS----LACCLKWESNITAFSVISGSH-FMYIGDENGLMSVIK 145 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~----~l~~~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~ 145 (1100)
+..+|..+|.+++|+|++.+|++++.|+.|++||+.++. ......|...|++++|+|++. ++++|+.+|.|++|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345899999999999999999999999999999999887 666678899999999999999 999999999999999
Q ss_pred E-ecCCCeeeeeceeecc--cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC---------CEEE
Q 001321 146 Y-DADEGKLFQLPYNISA--DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---------AQII 213 (1100)
Q Consensus 146 ~-d~~~~~l~~~~~~i~~--~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~---------~~~~ 213 (1100)
+ +.. ... .+.+ |. ..|.+++|+| +.++++++.|+.|++||+.+ ++.+
T Consensus 86 ~~~~~--~~~----~~~~~~~~------------~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 86 LIGSP--SFQ----ALTNNEAN------------LGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp SSSSS--SEE----ECBSCCCC------------SCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred eccCC--ceE----eccccCCC------------CceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 8 642 222 2444 54 8899999988 66799999999999999986 3322
Q ss_pred EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC-CCCCCCcccCC
Q 001321 214 FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST-TASTKGQQTGS 292 (1100)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~-~~~~~~~~~~~ 292 (1100)
..+.| ...|.+++|. |++ +++++.||.|++||+.+ +....
T Consensus 145 ~~~~~------------------------------~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~~~~------ 185 (342)
T 1yfq_A 145 NNTKV------------------------------KNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCEDDNG------ 185 (342)
T ss_dssp SSSSS------------------------------CCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTTCCC------
T ss_pred eEEee------------------------------CCceEEEEec-CCc--EEEEeCCCeEEEEECCccccccc------
Confidence 21112 7789999986 777 99999999999999865 31000
Q ss_pred CCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcce
Q 001321 293 RNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFA 372 (1100)
Q Consensus 293 ~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~ 372 (1100)
. .. .. .
T Consensus 186 ----~--------------~~------------------~~--------------------------------~------ 191 (342)
T 1yfq_A 186 ----T--------------IE------------------ES--------------------------------G------ 191 (342)
T ss_dssp ----E--------------EE------------------EC--------------------------------S------
T ss_pred ----e--------------ee------------------ec--------------------------------C------
Confidence 0 00 00 0
Q ss_pred eEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCch
Q 001321 373 DMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSS 452 (1100)
Q Consensus 373 d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~ 452 (1100)
+.
T Consensus 192 ------------------------------------------------------------~~------------------ 193 (342)
T 1yfq_A 192 ------------------------------------------------------------LK------------------ 193 (342)
T ss_dssp ------------------------------------------------------------CS------------------
T ss_pred ------------------------------------------------------------CC------------------
Confidence 00
Q ss_pred hhHhHHHhhccccCCCcccCcccccccCCcccccCccccCC-CCcEEEEEecCCcEEEeeCCCC------ceeEEeeecc
Q 001321 453 KGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHS-VDRVYLAGYHDGSVRIWDATYP------VFKLICALDA 525 (1100)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~-~~~~l~Tg~~DGtIriWd~~~~------~l~~~~~l~~ 525 (1100)
..+.++.++| +++++++|+.||.|++||+... ... ..+..
T Consensus 194 -------------------------------~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~~ 240 (342)
T 1yfq_A 194 -------------------------------YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR--FAFRC 240 (342)
T ss_dssp -------------------------------SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC--EEEEC
T ss_pred -------------------------------CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc--eeeec
Confidence 0001224567 7789999999999999998765 322 11110
Q ss_pred ceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeec-Cc
Q 001321 526 EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLV-NS 604 (1100)
Q Consensus 526 ~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-~~ 604 (1100)
........+|...|++++|+|++++|++|+.||.|++|++... .++..+..| .+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------------~~~~~~~~~h~~ 295 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------------------KKIKNFAKFNED 295 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------------------EEEEECCCCSSS
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-------------------------hHhhhhhcccCC
Confidence 0000001133559999999999999999999999999999865 245667788 99
Q ss_pred CeEEEEEcCCCCEEEEEeCCce-EEEEe
Q 001321 605 PVRALQFTSSGAKLAVGFECGR-VAVLD 631 (1100)
Q Consensus 605 ~VtsLafSp~g~~LavGs~dG~-V~vwD 631 (1100)
+|++++ |++++|++|+.||+ ...+.
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CceEec--CCCCeEEEEecCCccccccc
Confidence 999999 99999999999998 55444
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=6.6e-26 Score=254.34 Aligned_cols=282 Identities=16% Similarity=0.212 Sum_probs=211.5
Q ss_pred EEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001321 79 YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 79 V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~ 155 (1100)
...|+||+++ +++++.|++|+|||+.+++++..+ .|...|++++|+|+++++++|+.||+|+||++.. ++...
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~~~ 103 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKRLR 103 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC--ceeEE
Confidence 5779999985 555667999999999999888766 4567899999999999999999999999999764 44442
Q ss_pred eceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE--EEEEecCCcccccccccCCCCC
Q 001321 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ--IIFVGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~--~~~~~~~~~~~~~~~l~~~~~g 233 (1100)
.+.+|. ..+.++.+ .+..+++++.++.+++|+..... +....+|
T Consensus 104 ---~~~~h~------------~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 149 (318)
T 4ggc_A 104 ---NMTSHS------------ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH--------------- 149 (318)
T ss_dssp ---EEECCS------------SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECC---------------
T ss_pred ---EecCcc------------ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCc---------------
Confidence 355555 67887777 34579999999999999988763 3445556
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEE
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVL 313 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 313 (1100)
...+..+.|. +++.++++++.||.|++||+.+++.... .. ...
T Consensus 150 ---------------~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------~~--------------~~~ 192 (318)
T 4ggc_A 150 ---------------SQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV-------PL--------------QTF 192 (318)
T ss_dssp ---------------SSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSC-------CS--------------EEE
T ss_pred ---------------cCceEEEEEc-CCCCEEEEEecCcceeEEECCCCccccc-------ce--------------eee
Confidence 7788889986 9999999999999999999876521110 00 000
Q ss_pred EecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEE
Q 001321 314 HWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFV 393 (1100)
Q Consensus 314 ~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~v 393 (1100)
. .....+..+.+.|.
T Consensus 193 ---------~------------------------------------------~~~~~v~~~~~~~~-------------- 207 (318)
T 4ggc_A 193 ---------T------------------------------------------QHQGAVKAVAWCPW-------------- 207 (318)
T ss_dssp ---------C------------------------------------------CCCSCEEEEEECTT--------------
T ss_pred ---------c------------------------------------------ccCCceEEEEecCC--------------
Confidence 0 00000001001000
Q ss_pred EecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCc
Q 001321 394 LTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGH 473 (1100)
Q Consensus 394 l~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1100)
T Consensus 208 -------------------------------------------------------------------------------- 207 (318)
T 4ggc_A 208 -------------------------------------------------------------------------------- 207 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEE
Q 001321 474 IKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV 553 (1100)
Q Consensus 474 ~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Las 553 (1100)
.+..-.+++++.+++|++||....... ....+...+..+.|+|++..+++
T Consensus 208 ------------------~~~~~~~~~~~~~~~i~lwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 208 ------------------QSNVLATGGGTSDRHIRIWNVCSGACL------------SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ------------------STTEEEEEECTTTCEEEEEETTTCCEE------------EEEECSSCEEEEEEETTTTEEEE
T ss_pred ------------------CCcEEEEEecCCCCEEEEEeccccccc------------ccccceeeeeeeeecccccceEE
Confidence 011113456788999999999877643 12345568999999999999887
Q ss_pred Ee--cCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEe
Q 001321 554 GN--EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLD 631 (1100)
Q Consensus 554 g~--~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD 631 (1100)
++ .||.|+||++.+. .++..+.+|.++|++|+|+|+|++||+|+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~-------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTM-------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTC-------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCC-------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 65 7899999998765 25677899999999999999999999999999999999
Q ss_pred cCCc
Q 001321 632 MNLL 635 (1100)
Q Consensus 632 ~~~~ 635 (1100)
+...
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9754
No 89
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.7e-26 Score=271.20 Aligned_cols=212 Identities=15% Similarity=0.230 Sum_probs=161.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce------------EEEeCCCC------------CCEEEEEEEeCC--
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE------------GLLISPSQ------------LPYKNLEFLQNQ-- 88 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~------------~~~~~~h~------------~~V~~l~fs~d~-- 88 (1100)
.+.|++++|+|++++||+|+.||.|+||+....+ .....+|. .+|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 6799999999999999999999999999986554 44566888 899999999998
Q ss_pred CEEEEEECCCcEEEEEcCCCceee-----------------------------------------eeecCCCeEEEEEec
Q 001321 89 GFLISITNDNEIQVWSLESRSLAC-----------------------------------------CLKWESNITAFSVIS 127 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~-----------------------------------------~~~~~~~Vt~~~~s~ 127 (1100)
.+|++++.|++|++||+.++.... ...|...|++++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 799999999999999998754321 125778999999999
Q ss_pred CCCEEEEEeCCCcEEEEEEecCCCeeeee---ceeecccccccccCCCCCCCCCeEEEEeccCCCC-CEEEEEEcCCEEE
Q 001321 128 GSHFMYIGDENGLMSVIKYDADEGKLFQL---PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG-NRVLIAYENALVI 203 (1100)
Q Consensus 128 ~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~---~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g-~~ll~~~~dg~V~ 203 (1100)
+++++++| .||.|+||+++.....+... +..+.+|. ..|.+++|+| ++ .+|++++.||.|+
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~p--~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT------------EVITAAEFHP--NSCNTFVYSSSKGTIR 252 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC------------CCEEEEEECS--SCTTEEEEEETTSCEE
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccC------------cceEEEEECC--CCCcEEEEEeCCCeEE
Confidence 99999999 79999999987321111100 00122333 7899999998 55 7899999999999
Q ss_pred EEEccCCEE-----EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001321 204 LWDVSEAQI-----IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1100)
Q Consensus 204 lwdl~~~~~-----~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd 278 (1100)
+||+.+++. ..+.+|.+.... ..-..+...|.+++|. |+|.+|++++. |.|++||
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd 312 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNR------------------SFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWD 312 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----C------------------CHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEE
T ss_pred EEECcCCccccceeeEeccCCCcccc------------------ccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEe
Confidence 999998764 333333100000 0000002489999986 99999999998 9999999
Q ss_pred cCC
Q 001321 279 TST 281 (1100)
Q Consensus 279 ~~~ 281 (1100)
+..
T Consensus 313 ~~~ 315 (447)
T 3dw8_B 313 LNM 315 (447)
T ss_dssp TTC
T ss_pred CCC
Confidence 875
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=1.2e-26 Score=261.43 Aligned_cols=272 Identities=17% Similarity=0.211 Sum_probs=189.4
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|.+.|++++|+|++++|++|+.|++|+||++........ ..+.+|. .+|.+++|+|..++++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~---~~l~gH~------------~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI---ADLRGHE------------GPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE---EEEECCS------------SCEEEEEECCGGGSSCEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE---EEEcCCC------------ccEEEEEeCCCCCCCEEE
Confidence 6889999999999999999999999999999975322222 3466776 899999997643467799
Q ss_pred EEEcCCEEEEEEccCCE---EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC--CCEEEEEE
Q 001321 195 IAYENALVILWDVSEAQ---IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~---~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd--g~~l~sg~ 269 (1100)
+++.|++|++||+.++. ...+.+| ...|.+++|. |+ |.+|++|+
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~~~~~h------------------------------~~~V~~v~~~-p~~~g~~lasgs 124 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSHEHAGH------------------------------DSSVNSVCWA-PHDYGLILACGS 124 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEEEECCC------------------------------SSCCCEEEEC-CTTTCSCEEEEC
T ss_pred EEECCCEEEEEECCCCcceEEEEccCC------------------------------CCceEEEEEC-CCCCCcEEEEEc
Confidence 99999999999998863 2334455 7789999996 87 78999999
Q ss_pred cCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001321 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1100)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~ 349 (1100)
.||.|++||+..+.... +.......
T Consensus 125 ~D~~i~lwd~~~~~~~~------------~~~~~~~h------------------------------------------- 149 (316)
T 3bg1_A 125 SDGAISLLTYTGEGQWE------------VKKINNAH------------------------------------------- 149 (316)
T ss_dssp SSSCEEEEEECSSSCEE------------ECCBTTSS-------------------------------------------
T ss_pred CCCCEEEEecCCCCCcc------------eeeeeccc-------------------------------------------
Confidence 99999999986431000 00000000
Q ss_pred CccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcc
Q 001321 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1100)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~ 429 (1100)
...+..+.+.|... .|.+. + .
T Consensus 150 ------------------~~~v~~~~~~~~~~---------------~~~~~--~----------~-------------- 170 (316)
T 3bg1_A 150 ------------------TIGCNAVSWAPAVV---------------PGSLI--D----------H-------------- 170 (316)
T ss_dssp ------------------SSCBCCCEECCCCC---------------C--------------------------------
T ss_pred ------------------cCCcceEEEccccC---------------Ccccc--c----------c--------------
Confidence 00111111111100 00000 0 0
Q ss_pred cccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEE
Q 001321 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1100)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIri 509 (1100)
..| ....++++|++|+.||+|+|
T Consensus 171 ------------------------------------------------~~~---------~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 171 ------------------------------------------------PSG---------QKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ------------------------------------------------CCS---------CCCCCCCBEECCBTTSBCCE
T ss_pred ------------------------------------------------ccc---------cCccccceEEEecCCCeEEE
Confidence 000 11233568999999999999
Q ss_pred eeCCCCc-eeEEeeeccceeeeeecCCCCCeeEEEEeeCC----CeEEEEecCceEEEEEecCCCCCcceeeeccCCCce
Q 001321 510 WDATYPV-FKLICALDAEVQGIEVAGSRAPVSTLSFCFIN----SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEV 584 (1100)
Q Consensus 510 Wd~~~~~-l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~----~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~ 584 (1100)
||+.... .... ..+.+|...|++++|+|++ .+||+|+.||.|+||++.......
T Consensus 194 Wd~~~~~~~~~~---------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~------------ 252 (316)
T 3bg1_A 194 WKEEEDGQWKEE---------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT------------ 252 (316)
T ss_dssp EEECTTSCEEEE---------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC------------
T ss_pred EEeCCCCcccee---------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc------------
Confidence 9986542 1111 2367899999999999986 789999999999999987631100
Q ss_pred eeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecC
Q 001321 585 HALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMN 633 (1100)
Q Consensus 585 ~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~ 633 (1100)
.....+..|.+.|++++|+|++++||+|+.||+|+||+..
T Consensus 253 ---------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 253 ---------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ---------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ---------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 0112335789999999999999999999999999999976
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.95 E-value=6e-26 Score=264.71 Aligned_cols=197 Identities=16% Similarity=0.278 Sum_probs=158.4
Q ss_pred CCCCC--eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE--EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 33 GIPAT--ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 33 G~~~~--v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
|+... +.+++|++ ..+++++.||.|+||+....+.. ....|..+|.+++|+|++.+|++++.|+.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 55555 44566665 45777888999999999655443 44568999999999999999999999999999999999
Q ss_pred ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+.+..+ .|...|++++|+ +.++++|+.+|.|++|++........ .+.+|. ..|.++.|+|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~------------~~v~~~~~~~- 227 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIG----TLQGHS------------SEVCGLAWRS- 227 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCS------------SCEEEEEECT-
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceee----EEcCCC------------CCeeEEEEcC-
Confidence 888777 778899999994 57999999999999999875333222 255555 8899999988
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-IL 265 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l 265 (1100)
++.+|++++.||.|++||+.+++....+ +| ...|.+++|. |++. .+
T Consensus 228 -~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~-p~~~~ll 275 (401)
T 4aez_A 228 -DGLQLASGGNDNVVQIWDARSSIPKFTKTNH------------------------------NAAVKAVAWC-PWQSNLL 275 (401)
T ss_dssp -TSSEEEEEETTSCEEEEETTCSSEEEEECCC------------------------------SSCCCEEEEC-TTSTTEE
T ss_pred -CCCEEEEEeCCCeEEEccCCCCCccEEecCC------------------------------cceEEEEEEC-CCCCCEE
Confidence 6888999999999999999988765443 44 7789999996 8765 55
Q ss_pred EEEE--cCCcEEEEecCCC
Q 001321 266 AVGY--IDGDILLWNTSTT 282 (1100)
Q Consensus 266 ~sg~--~DG~I~lWd~~~~ 282 (1100)
++++ .||.|++||+.++
T Consensus 276 ~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp EEECCTTTCEEEEEETTTC
T ss_pred EEecCCCCCEEEEEECCCC
Confidence 5554 6999999998654
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.2e-25 Score=250.58 Aligned_cols=206 Identities=15% Similarity=0.246 Sum_probs=169.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---ceEEEeCCCCCCEEEEEEEeC--CCEEEEEECCCcEEEEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWS 104 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~---~~~~~~~~h~~~V~~l~fs~d--~~~Lls~s~d~~I~vWd 104 (1100)
...||.+.|.+++|+|++++||+|+.||.|+||+... .....+.+|.++|.+++|+++ +.+|++++.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 4568999999999999999999999999999999853 234567799999999999863 78999999999999999
Q ss_pred cCCCc--eeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 105 LESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 105 ~~s~~--~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
+.+++ .+..+ .|...|.+++|+|+ +.++++|+.||.|++|++....... +..+.+|. ..|
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h~------------~~v 148 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAHA------------IGV 148 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECCS------------SCE
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeeccc------------Ccc
Confidence 99874 33333 57789999999998 8899999999999999987532111 12355555 789
Q ss_pred EEEEeccCC-----------CCCEEEEEEcCCEEEEEEccCCE----EE-EEecCCcccccccccCCCCCCCCccccCCC
Q 001321 180 VGVLPHPNS-----------SGNRVLIAYENALVILWDVSEAQ----II-FVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1100)
Q Consensus 180 ~sv~f~P~~-----------~g~~ll~~~~dg~V~lwdl~~~~----~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~ 243 (1100)
.+++|+|.. ++.+|++|+.|+.|++||+.++. .. .+.+|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H------------------------- 203 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH------------------------- 203 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-------------------------
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-------------------------
Confidence 999999852 25689999999999999998764 22 34455
Q ss_pred CCCCCCCceEEEEEecCCC---CEEEEEEcCCcEEEEecCC
Q 001321 244 EHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 244 ~~~~~~~~V~sl~w~spdg---~~l~sg~~DG~I~lWd~~~ 281 (1100)
...|.+++|. |++ .+|++++.||+|++||+.+
T Consensus 204 -----~~~V~~v~~s-p~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 204 -----SDWVRDVAWS-PTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----SSCEEEEEEC-CCCSSSEEEEEEETTSCEEEEEESS
T ss_pred -----CCceEEEEEC-CCCCCceEEEEEECCCcEEEEEeCC
Confidence 7889999996 984 8999999999999999864
No 93
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=9.4e-26 Score=255.51 Aligned_cols=218 Identities=14% Similarity=0.191 Sum_probs=171.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-----eEEEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQV 102 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-----~~~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~v 102 (1100)
...||.+.|++++|+|++++||+|+.||.|+||+.... ......+|..+|.+++|+| |+.+|++++.|+.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44689999999999999999999999999999998643 2334568999999999999 6899999999999999
Q ss_pred EEcCCC---------ceeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccC
Q 001321 103 WSLESR---------SLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 103 Wd~~s~---------~~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~ 170 (1100)
||+.++ +.+..+ .|.+.|++++|+|+ +.++++|+.||.|++|++........ +.+... ......
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~-~~~~~~ 161 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS---WTLTSE-MKVLSI 161 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC---CEEEEE-EESCSC
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc---cccccc-cccccc
Confidence 999886 334444 67889999999999 99999999999999999875332111 111110 001111
Q ss_pred CCCCCCCCeEEEEeccC-CCCCEEEEEEcCCEEEEEEccCCEEEEE---ecCCcccccccccCCCCCCCCccccCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDVSEAQIIFV---GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~-~~g~~ll~~~~dg~V~lwdl~~~~~~~~---~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~ 246 (1100)
.+..+...+.++.|+|. ..+.++++++.++.+.+|+...++.... .+|
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------------------------- 213 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH---------------------------- 213 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC----------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC----------------------------
Confidence 22345578999999984 2377899999999998888887765322 233
Q ss_pred CCCCceEEEEEecCCC----CEEEEEEcCCcEEEEecCCC
Q 001321 247 PEEKEISALCWASSSG----SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 247 ~~~~~V~sl~w~spdg----~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|++++|. |++ .+|++|+.||.|++||+..+
T Consensus 214 --~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 214 --KSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp --CSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred --CcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 7789999986 998 89999999999999998644
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=1.1e-25 Score=252.46 Aligned_cols=192 Identities=17% Similarity=0.279 Sum_probs=149.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE---EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL---LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~---~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
.++|+||+++ +||+|. |+.|+|||....+.+ ...+|...|++++|+|++.+|++++.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4779999986 899986 899999999665443 23468889999999999999999999999999999999988777
Q ss_pred -ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 -~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.|...+.+++ +.+..+++|+.++.+++|+.......+. .+.+|. ..+..+.++| ++.++
T Consensus 106 ~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~--~~~~l 165 (318)
T 4ggc_A 106 TSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHS------------QEVCGLRWAP--DGRHL 165 (318)
T ss_dssp ECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEE----EEECCS------------SCEEEEEECT--TSSEE
T ss_pred cCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEE----EEcCcc------------CceEEEEEcC--CCCEE
Confidence 5666666655 4567999999999999988765333322 245555 7899999977 68889
Q ss_pred EEEEcCCEEEEEEccCCEEE-----EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE---
Q 001321 194 LIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL--- 265 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~-----~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l--- 265 (1100)
++++.||.|++||+.+++.. ....+ .+.|.+++|. |++..+
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~~~ 214 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQH------------------------------QGAVKAVAWC-PWQSNVLAT 214 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBSCCSEEECCC------------------------------CSCEEEEEEC-TTSTTEEEE
T ss_pred EEEecCcceeEEECCCCcccccceeeeccc------------------------------CCceEEEEec-CCCCcEEEE
Confidence 99999999999999876421 11111 6778899986 666533
Q ss_pred EEEEcCCcEEEEecCCC
Q 001321 266 AVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 266 ~sg~~DG~I~lWd~~~~ 282 (1100)
++++.++.|++||....
T Consensus 215 ~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp EECTTTCEEEEEETTTC
T ss_pred EecCCCCEEEEEecccc
Confidence 45677899999997543
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=4.3e-26 Score=258.88 Aligned_cols=202 Identities=16% Similarity=0.084 Sum_probs=166.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce----EEEeCCCCCCEEEEEEEeCCC-EEEEEECCCcEEEEEc-
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQG-FLISITNDNEIQVWSL- 105 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~----~~~~~~h~~~V~~l~fs~d~~-~Lls~s~d~~I~vWd~- 105 (1100)
.+|.+.|++++|+|++++||+|+.||.|+||+..... ......|..+|.+++|+|++. +|++++.|+.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 3889999999999999999999999999999986554 566668999999999999999 9999999999999999
Q ss_pred CCCceeeeee--cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee----eeeceeecccccccccCCCCCCCCCe
Q 001321 106 ESRSLACCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL----FQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 106 ~s~~~l~~~~--~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l----~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
.+++...... |...|++++|+| +.++++|+.+|.|++|++....+.. ......+. +...|
T Consensus 88 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------~~~~v 153 (342)
T 1yfq_A 88 GSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------------VKNKI 153 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-------------SCCCE
T ss_pred cCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-------------eCCce
Confidence 9888766667 899999999999 9999999999999999987411110 00000111 23789
Q ss_pred EEEEeccCCCCCEEEEEEcCCEEEEEEccC-CEE--E-EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 180 VGVLPHPNSSGNRVLIAYENALVILWDVSE-AQI--I-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~-~~~--~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
.+++|+| ++ +++++.++.|++||+.+ +.. . ....| ...|.++
T Consensus 154 ~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------~~~i~~i 199 (342)
T 1yfq_A 154 FTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL------------------------------KYQIRDV 199 (342)
T ss_dssp EEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSC------------------------------SSCEEEE
T ss_pred EEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCC------------------------------CCceeEE
Confidence 9999977 33 99999999999999987 432 1 22222 6789999
Q ss_pred EEecC-CCCEEEEEEcCCcEEEEecCCC
Q 001321 256 CWASS-SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 256 ~w~sp-dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+|. | ++.++++++.||.|++|++...
T Consensus 200 ~~~-~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 200 ALL-PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEC-SGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEC-CCCCCEEEEEecCCcEEEEEEcCC
Confidence 986 9 9999999999999999998643
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=6.4e-26 Score=259.62 Aligned_cols=164 Identities=10% Similarity=0.115 Sum_probs=132.6
Q ss_pred ceEEEeCCCCCCEEEEEEEeC---CCEEEEEECCCcEEEEEcCC-Ccee-eee-ecCCCeEEEEEecCCCEEEEEeCCCc
Q 001321 67 IEGLLISPSQLPYKNLEFLQN---QGFLISITNDNEIQVWSLES-RSLA-CCL-KWESNITAFSVISGSHFMYIGDENGL 140 (1100)
Q Consensus 67 ~~~~~~~~h~~~V~~l~fs~d---~~~Lls~s~d~~I~vWd~~s-~~~l-~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~ 140 (1100)
..+....+|..+|.+++|+|+ |.+|++++.|+.|++||+.+ +..+ ..+ .|.+.|++++|+|++++|++|+.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 345567789999999999999 58999999999999999997 5444 333 78899999999999999999999999
Q ss_pred EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCc
Q 001321 141 MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1100)
Q Consensus 141 V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~ 220 (1100)
|++|+++. +.... +..|. ..|.++.|+|..++.+|++++.||.|++||+.+++.+..+..
T Consensus 110 v~iwd~~~--~~~~~----~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 169 (368)
T 3mmy_A 110 AKMWDLSS--NQAIQ----IAQHD------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-- 169 (368)
T ss_dssp EEEEETTT--TEEEE----EEECS------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC--
T ss_pred EEEEEcCC--CCcee----ecccc------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec--
Confidence 99999874 33332 33344 889999995555788899999999999999998876554433
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 221 ~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
...+.++.+. +..+++++.++.+.+|++..
T Consensus 170 ----------------------------~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 170 ----------------------------PERCYCADVI---YPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp ----------------------------SSCEEEEEEE---TTEEEEEEGGGCEEEEECSS
T ss_pred ----------------------------CCCceEEEec---CCeeEEEeCCCcEEEEEecc
Confidence 3456666654 45899999999999999864
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=5.9e-25 Score=252.70 Aligned_cols=155 Identities=9% Similarity=0.004 Sum_probs=122.0
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCc----eEEEEEe
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----LVYIYNL 565 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG----~V~lw~l 565 (1100)
+|+|+++++++++.|+ +++|+...+.... .....+|...|++++|+|++.+|++++.++ .+++|++
T Consensus 183 ~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---------~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 183 HFSTDGKVVAYITGSS-LEVISTVTGSCIA---------RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp EECTTSSEEEEECSSC-EEEEETTTCCEEE---------EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred EEccCCceEEecccee-EEEEEeccCccee---------eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 6788999999998655 5555555554221 123457888999999999999999999887 5777777
Q ss_pred cCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCC
Q 001321 566 NGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDIS 645 (1100)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~ 645 (1100)
...... ......+.+|..+|++++|||+|++||+|+.||+|+|||+++++++... ..
T Consensus 253 ~~~~~~---------------------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~--~~ 309 (365)
T 4h5i_A 253 KSGNTS---------------------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF--KQ 309 (365)
T ss_dssp ETTEEE---------------------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE--TT
T ss_pred ccceec---------------------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe--cC
Confidence 654110 0123456789999999999999999999999999999999999887332 35
Q ss_pred CCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeC
Q 001321 646 GSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGG 699 (1100)
Q Consensus 646 ~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~ 699 (1100)
+|..+|++|+|++++ .+|++|+.|++|+|||.
T Consensus 310 gH~~~V~~v~fSpdg----------------------~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 310 AHSFAITEVTISPDS----------------------TYVASVSAANTIHIIKL 341 (365)
T ss_dssp SSSSCEEEEEECTTS----------------------CEEEEEETTSEEEEEEC
T ss_pred cccCCEEEEEECCCC----------------------CEEEEEeCCCeEEEEEc
Confidence 799999999999655 45999999999999994
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.7e-25 Score=262.23 Aligned_cols=196 Identities=13% Similarity=0.236 Sum_probs=161.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
.+.++...|.|++| ++++||+|+.||.|+||+....+ .....+|..+|.+++| ++.+|++++.|++|++||+.++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 44567778988887 68999999999999999996554 4466789999999999 7789999999999999999999
Q ss_pred ceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
+.+..+ .|...|++++++ +.++++|+.||.|++|++........ ...+.+|. ..|.++.|
T Consensus 204 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~--~~~~~~~~------------~~v~~~~~--- 264 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITL--RRVLVGHR------------AAVNVVDF--- 264 (435)
T ss_dssp CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEE--EEEECCCS------------SCEEEEEE---
T ss_pred cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCcee--eeEecCCC------------CcEEEEEe---
Confidence 888777 677899999997 45999999999999999876332211 12244554 88999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEE-ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFV-GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
+++++++++.||.|++||+.+++.+.. .+| ...|.++.| ++.+++
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------------------~~~v~~~~~---~~~~l~ 310 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH------------------------------KRGIACLQY---RDRLVV 310 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECC------------------------------SSCEEEEEE---ETTEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC------------------------------CCcEEEEEe---CCCEEE
Confidence 466899999999999999999876554 344 678888886 368999
Q ss_pred EEEcCCcEEEEecCCC
Q 001321 267 VGYIDGDILLWNTSTT 282 (1100)
Q Consensus 267 sg~~DG~I~lWd~~~~ 282 (1100)
+|+.||.|++||+.++
T Consensus 311 ~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 311 SGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEETTSCEEEEETTTC
T ss_pred EEeCCCeEEEEECCCC
Confidence 9999999999998654
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.1e-25 Score=263.21 Aligned_cols=285 Identities=17% Similarity=0.284 Sum_probs=216.0
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 72 ISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
..+|..+|.+++| ++.+|++++.|+.|++||+.+++....+ .|.+.|+++++ +++++++|+.||.|++|++..
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-- 202 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-- 202 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS--
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--
Confidence 3467778998887 7889999999999999999999888777 68889999998 788999999999999999875
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE----EEecCCccccccc
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII----FVGGGKDLQLKDG 226 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~----~~~~~~~~~~~~~ 226 (1100)
++.. ..+.+|. ..|.++.|++ ..+++++.||.|++||+.++... ...+|
T Consensus 203 ~~~~---~~~~~h~------------~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------- 255 (435)
T 1p22_A 203 GEML---NTLIHHC------------EAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-------- 255 (435)
T ss_dssp CCEE---EEECCCC------------SCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--------
T ss_pred CcEE---EEEcCCC------------CcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--------
Confidence 3343 2355555 8899999954 36999999999999999887532 23344
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAER 306 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (1100)
...|.+++| ++.++++|+.||.|++||+.++.. +.
T Consensus 256 ----------------------~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~-----------~~--------- 290 (435)
T 1p22_A 256 ----------------------RAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF-----------VR--------- 290 (435)
T ss_dssp ----------------------SSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE-----------EE---------
T ss_pred ----------------------CCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE-----------EE---------
Confidence 778999997 588999999999999999865410 00
Q ss_pred CcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCC
Q 001321 307 RLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGN 386 (1100)
Q Consensus 307 ~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~ 386 (1100)
.+ .+
T Consensus 291 -----~~------------------~~----------------------------------------------------- 294 (435)
T 1p22_A 291 -----TL------------------NG----------------------------------------------------- 294 (435)
T ss_dssp -----EE------------------EC-----------------------------------------------------
T ss_pred -----EE------------------cC-----------------------------------------------------
Confidence 00 00
Q ss_pred CcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccC
Q 001321 387 HKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHS 466 (1100)
Q Consensus 387 ~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1100)
+...+++.
T Consensus 295 ----------------------------------------------~~~~v~~~-------------------------- 302 (435)
T 1p22_A 295 ----------------------------------------------HKRGIACL-------------------------- 302 (435)
T ss_dssp ----------------------------------------------CSSCEEEE--------------------------
T ss_pred ----------------------------------------------CCCcEEEE--------------------------
Confidence 00000000
Q ss_pred CCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEee
Q 001321 467 SHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCF 546 (1100)
Q Consensus 467 ~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp 546 (1100)
.+ +++++++|+.||+|++||+.++.+. ..+.+|...|++++|
T Consensus 303 -----------------------~~--~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 303 -----------------------QY--RDRLVVSGSSDNTIRLWDIECGACL-----------RVLEGHEELVRCIRF-- 344 (435)
T ss_dssp -----------------------EE--ETTEEEEEETTSCEEEEETTTCCEE-----------EEECCCSSCEEEEEC--
T ss_pred -----------------------Ee--CCCEEEEEeCCCeEEEEECCCCCEE-----------EEEeCCcCcEEEEEe--
Confidence 11 2348999999999999999987755 446789999999999
Q ss_pred CCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCce
Q 001321 547 INSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGR 626 (1100)
Q Consensus 547 d~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~ 626 (1100)
++.+|++|+.||.|++|++........ ..+..++..+.+|.++|++++| ++.+|++|+.||+
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRA----------------PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTS----------------CTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccc----------------cccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence 789999999999999999976421100 1112256778899999999999 6788999999999
Q ss_pred EEEEecCCceEE
Q 001321 627 VAVLDMNLLSVL 638 (1100)
Q Consensus 627 V~vwD~~~~~~~ 638 (1100)
|++||+.+....
T Consensus 407 i~iwd~~~~~~~ 418 (435)
T 1p22_A 407 ILIWDFLNDPAA 418 (435)
T ss_dssp EEEEC-------
T ss_pred EEEEECCCCCCc
Confidence 999999886654
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=6.1e-26 Score=268.11 Aligned_cols=182 Identities=12% Similarity=0.152 Sum_probs=130.6
Q ss_pred CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-----------eeeee-ecC------------CCeEEEEEecC
Q 001321 73 SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-----------LACCL-KWE------------SNITAFSVISG 128 (1100)
Q Consensus 73 ~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-----------~l~~~-~~~------------~~Vt~~~~s~~ 128 (1100)
..|..+|++++|+|++.+|++++.|+.|+|||+.+++ +...+ .|. +.|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 5678899999999999999999999999999999876 34444 566 78999999999
Q ss_pred C--CEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc-------------c------------ccccCCCCCCCCCeEE
Q 001321 129 S--HFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-------------L------------SEKAGFPLLSHQPVVG 181 (1100)
Q Consensus 129 ~--~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~-------------~------------~~~~~~~~~~~~~V~s 181 (1100)
+ .++++|+.||+|++|++.... .....+.+..+. + .....+...+...|.+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERD--KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEE--EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCcceEEEeCCCCeEEEEeccccc--CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 8 899999999999999987521 110001110000 0 0000012334588999
Q ss_pred EEeccCCCCCEEEEEEcCCEEEEEEccC-CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 182 VLPHPNSSGNRVLIAYENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 182 v~f~P~~~g~~ll~~~~dg~V~lwdl~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
++|+| ++++|+++ .|+.|++||+.+ ++.......+...+ . .+...|.+++|. |
T Consensus 183 ~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~--~--------------------~~~~~v~~~~~~-p 236 (447)
T 3dw8_B 183 ISINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANM--E--------------------ELTEVITAAEFH-P 236 (447)
T ss_dssp EEECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSG--G--------------------GCCCCEEEEEEC-S
T ss_pred EEEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccc--c--------------------ccCcceEEEEEC-C
Confidence 99988 68878888 899999999984 44443321100000 0 117789999996 9
Q ss_pred CC-CEEEEEEcCCcEEEEecCCC
Q 001321 261 SG-SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 261 dg-~~l~sg~~DG~I~lWd~~~~ 282 (1100)
++ .+|++|+.||.|++||+.++
T Consensus 237 ~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 237 NSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp SCTTEEEEEETTSCEEEEETTTC
T ss_pred CCCcEEEEEeCCCeEEEEECcCC
Confidence 98 99999999999999999765
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=3.5e-25 Score=250.84 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=134.0
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC----ceeeee-ecCCCeEEEEEec--CCCEEEEEeCCCcEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR----SLACCL-KWESNITAFSVIS--GSHFMYIGDENGLMSV 143 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~----~~l~~~-~~~~~Vt~~~~s~--~~~~l~~G~~dG~V~I 143 (1100)
+..+|..+|++++|+|++.+|++++.|+.|++||+.++ +....+ .|...|++++|+| ++.+|++|+.||.|+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 45789999999999999999999999999999999976 344444 6889999999999 5999999999999999
Q ss_pred EEEecCCCeee----eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCC
Q 001321 144 IKYDADEGKLF----QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGK 219 (1100)
Q Consensus 144 w~~d~~~~~l~----~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~ 219 (1100)
|+++....... .....+..|. ..|.+++|+|...+.++++++.||.|++||+.+++....+...
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSK------------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCS------------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EecCCCcccccccCcceeeeecccC------------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 99986432110 0012344444 8899999988433888999999999999999887532111000
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC---CCEEEEEEcCCcEEEEecC
Q 001321 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS---GSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 220 ~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd---g~~l~sg~~DG~I~lWd~~ 280 (1100)
.... .+. .....+...+.+++|. |+ +..+++++.|+.+.+|+..
T Consensus 154 ~~~~--~~~--------------~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 154 SEMK--VLS--------------IPPANHLQSDFCLSWC-PSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp EEEE--SCS--------------CCCSSCSCCCEEEEEC-CCSSSCCEEEEEETTEEEEEEECT
T ss_pred cccc--ccc--------------cccCCcccceeEEEec-cCCCCCcEEEEecCCCcEEEEccC
Confidence 0000 000 0001126789999986 87 8999999999999777654
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=1.1e-24 Score=249.25 Aligned_cols=299 Identities=14% Similarity=0.130 Sum_probs=223.1
Q ss_pred EEcCCCceeeee-ecCCCeEEEEEecC---CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 103 WSLESRSLACCL-KWESNITAFSVISG---SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 103 Wd~~s~~~l~~~-~~~~~Vt~~~~s~~---~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
|+....+.+..+ .|.+.|++++|+|+ +++|++|+.||.|+||+++.....+. ..+.+|. ..
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~h~------------~~ 88 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP---KAQQMHT------------GP 88 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE---EEEEECS------------SC
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE---EEecccc------------CC
Confidence 344444445454 78899999999999 59999999999999999986444432 2255555 88
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
|.+++|+| ++++|++++.||.|++||+.+++.....+| ...|++++|.
T Consensus 89 v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------------------------~~~v~~~~~~ 136 (368)
T 3mmy_A 89 VLDVCWSD--DGSKVFTASCDKTAKMWDLSSNQAIQIAQH------------------------------DAPVKTIHWI 136 (368)
T ss_dssp EEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------SSCEEEEEEE
T ss_pred EEEEEECc--CCCEEEEEcCCCcEEEEEcCCCCceeeccc------------------------------cCceEEEEEE
Confidence 99999988 788899999999999999999998888777 8889999982
Q ss_pred -cCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCC
Q 001321 259 -SSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEI 337 (1100)
Q Consensus 259 -spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~ 337 (1100)
+|++.+|++++.||.|++||+.++.. +..+.. .
T Consensus 137 ~~~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~----------------------~------------- 170 (368)
T 3mmy_A 137 KAPNYSCVMTGSWDKTLKFWDTRSSNP-----------MMVLQL----------------------P------------- 170 (368)
T ss_dssp ECSSCEEEEEEETTSEEEEECSSCSSC-----------SEEEEC----------------------S-------------
T ss_pred eCCCCCEEEEccCCCcEEEEECCCCcE-----------EEEEec----------------------C-------------
Confidence 38999999999999999999875411 000000 0
Q ss_pred CCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCC
Q 001321 338 GSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEK 417 (1100)
Q Consensus 338 g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~ 417 (1100)
.....
T Consensus 171 ------------------------------------------------------------~~~~~--------------- 175 (368)
T 3mmy_A 171 ------------------------------------------------------------ERCYC--------------- 175 (368)
T ss_dssp ------------------------------------------------------------SCEEE---------------
T ss_pred ------------------------------------------------------------CCceE---------------
Confidence 00000
Q ss_pred CCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcE
Q 001321 418 KPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRV 497 (1100)
Q Consensus 418 ~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~ 497 (1100)
.......
T Consensus 176 -------------------------------------------------------------------------~~~~~~~ 182 (368)
T 3mmy_A 176 -------------------------------------------------------------------------ADVIYPM 182 (368)
T ss_dssp -------------------------------------------------------------------------EEEETTE
T ss_pred -------------------------------------------------------------------------EEecCCe
Confidence 0001125
Q ss_pred EEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCe----EEEEecCceEEEEEecCCCCCcc
Q 001321 498 YLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSS----LAVGNEFGLVYIYNLNGSLDAKN 573 (1100)
Q Consensus 498 l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~----Lasg~~dG~V~lw~l~~~~~~~~ 573 (1100)
++++..|+.+++||+........ .....+...+.++++.++... +++++.||.|++|++......
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-- 251 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFR---------RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-- 251 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEE---------ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH--
T ss_pred eEEEeCCCcEEEEEeccccchhh---------hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc--
Confidence 77788899999999987653211 112234456788888877766 999999999999999875210
Q ss_pred eeeeccCCCceeeccCCCcceeEEEEeecCc------------CeEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEe
Q 001321 574 FLFVLETKSEVHALPEGKISLCRAVFSLVNS------------PVRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFT 641 (1100)
Q Consensus 574 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~------------~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~ 641 (1100)
.....+..|.. +|++++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 252 --------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-- 309 (368)
T 3mmy_A 252 --------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK-- 309 (368)
T ss_dssp --------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE--
T ss_pred --------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE--
Confidence 11233344443 89999999999999999999999999999998873
Q ss_pred ecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEe
Q 001321 642 DDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVG 698 (1100)
Q Consensus 642 ~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d 698 (1100)
.+.+|..+|.+++|++.+.. |++++.|+....|+
T Consensus 310 -~~~~~~~~v~~~~~s~~g~~----------------------l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 310 -TSEQLDQPISACCFNHNGNI----------------------FAYASSYDWSKGHE 343 (368)
T ss_dssp -ECCCCSSCEEEEEECTTSSC----------------------EEEEECCCSTTCGG
T ss_pred -EecCCCCCceEEEECCCCCe----------------------EEEEeccccccccc
Confidence 44569999999999966654 99999988666655
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=1.6e-25 Score=252.02 Aligned_cols=207 Identities=16% Similarity=0.174 Sum_probs=161.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce---EEEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEEEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWS 104 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~---~~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd 104 (1100)
...||.+.|.+++|+|++++||+|+.||.|+||+..... ...+.+|..+|.+++|++ ++.+|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 345889999999999999999999999999999985432 335678999999999986 478999999999999999
Q ss_pred cCCCc--eeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 105 LESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 105 ~~s~~--~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
++++. .+..+ .|...|++++|+|+ +.+|++|+.||+|++|++..... ... ...+.+|. ..|
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~-~~~~~~h~------------~~v 153 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEV-KKINNAHT------------IGC 153 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEE-CCBTTSSS------------SCB
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cce-eeeecccc------------CCc
Confidence 99874 33333 67889999999998 78999999999999999875321 110 01233443 778
Q ss_pred EEEEeccCC---------------CCCEEEEEEcCCEEEEEEccCC---EEE-EEecCCcccccccccCCCCCCCCcccc
Q 001321 180 VGVLPHPNS---------------SGNRVLIAYENALVILWDVSEA---QII-FVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1100)
Q Consensus 180 ~sv~f~P~~---------------~g~~ll~~~~dg~V~lwdl~~~---~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~ 240 (1100)
.++.|+|.. .+.+|++++.|+.|++||+... +.. .+.+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h---------------------- 211 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH---------------------- 211 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC----------------------
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC----------------------
Confidence 899998842 1467999999999999999754 222 23344
Q ss_pred CCCCCCCCCCceEEEEEecCCC----CEEEEEEcCCcEEEEecCC
Q 001321 241 GISEHQPEEKEISALCWASSSG----SILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~spdg----~~l~sg~~DG~I~lWd~~~ 281 (1100)
...|.+++|. |++ .+|++++.||+|++|++.+
T Consensus 212 --------~~~V~~v~~s-p~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 212 --------SDWVRDVAWA-PSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp --------SSCEEEEECC-CCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred --------CCceEEEEec-CCCCCCCceEEEEcCCCeEEEEEccC
Confidence 7889999986 886 8899999999999999864
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-24 Score=249.26 Aligned_cols=272 Identities=14% Similarity=0.128 Sum_probs=198.3
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.|.+.|++++|+|++++|++|+.||.|+||+++....... ..+.+|. .+|.+++|+|..++.+|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~h~------------~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI---DTLTGHE------------GPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee---eEecCCC------------CcEEEEEeCCCCCCCEEE
Confidence 7889999999999999999999999999999985434443 3366665 899999998754588899
Q ss_pred EEEcCCEEEEEEccCCEE---EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC--CCEEEEEE
Q 001321 195 IAYENALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS--GSILAVGY 269 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd--g~~l~sg~ 269 (1100)
+++.||.|++||+.+++. ....+| ...|.+++|. |+ +.++++++
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~~~~~~~------------------------------~~~v~~~~~~-~~~~~~~l~~~~ 122 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQIAVHAVH------------------------------SASVNSVQWA-PHEYGPLLLVAS 122 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCC------------------------------SSCEEEEEEC-CGGGCSEEEEEE
T ss_pred EeccCCEEEEEEcCCCceeEeeeecCC------------------------------CcceEEEEeC-CCCCCCEEEEec
Confidence 999999999999999863 233334 7789999996 99 99999999
Q ss_pred cCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcC
Q 001321 270 IDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLE 349 (1100)
Q Consensus 270 ~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~ 349 (1100)
.||.|++||+.+..... ... + .+
T Consensus 123 ~d~~i~v~d~~~~~~~~-----------~~~------------~------------------~~---------------- 145 (379)
T 3jrp_A 123 SDGKVSVVEFKENGTTS-----------PII------------I------------------DA---------------- 145 (379)
T ss_dssp TTSEEEEEECCTTSCCC-----------EEE------------E------------------EC----------------
T ss_pred CCCcEEEEecCCCCcee-----------eEE------------e------------------cC----------------
Confidence 99999999987541100 000 0 00
Q ss_pred CccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcc
Q 001321 350 WSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGV 429 (1100)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~ 429 (1100)
....+..+.+.|...
T Consensus 146 -----------------~~~~v~~~~~~~~~~------------------------------------------------ 160 (379)
T 3jrp_A 146 -----------------HAIGVNSASWAPATI------------------------------------------------ 160 (379)
T ss_dssp -----------------CTTCEEEEEECCCC-------------------------------------------------
T ss_pred -----------------CCCceEEEEEcCccc------------------------------------------------
Confidence 000122222222100
Q ss_pred cccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEE
Q 001321 430 IPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRI 509 (1100)
Q Consensus 430 ~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIri 509 (1100)
. ..+ .....++++++++|+.||.|++
T Consensus 161 ------------------~-----------------------------~~~-------~~~~~~~~~~l~~~~~dg~i~i 186 (379)
T 3jrp_A 161 ------------------E-----------------------------EDG-------EHNGTKESRKFVTGGADNLVKI 186 (379)
T ss_dssp ---------------------------------------------------------------CTTCEEEEEETTSCEEE
T ss_pred ------------------c-----------------------------ccc-------cccCCCCCCEEEEEeCCCeEEE
Confidence 0 000 0023467779999999999999
Q ss_pred eeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeC---CCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceee
Q 001321 510 WDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI---NSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHA 586 (1100)
Q Consensus 510 Wd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd---~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~ 586 (1100)
||+..+...... ...+.+|...|++++|+|+ +.+|++++.||.|++|++........
T Consensus 187 ~d~~~~~~~~~~-------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------- 246 (379)
T 3jrp_A 187 WKYNSDAQTYVL-------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK------------- 246 (379)
T ss_dssp EEEETTTTEEEE-------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-------------
T ss_pred EEecCCCcceee-------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce-------------
Confidence 999766532111 1346789999999999999 89999999999999999987532100
Q ss_pred ccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 587 LPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 587 i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
........|...|++++|+|+|++|++|+.||.|+|||+...
T Consensus 247 -------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 247 -------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp -------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred -------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 011112348899999999999999999999999999999854
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=247.29 Aligned_cols=167 Identities=14% Similarity=0.177 Sum_probs=137.6
Q ss_pred EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC--CCceeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEE
Q 001321 70 LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVI 144 (1100)
Q Consensus 70 ~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~--s~~~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw 144 (1100)
....+|..+|.+++|+|++.+|++++.|+.|+|||+. +++.+..+ .|.+.|++++|+++ +++|++|+.||.|+||
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 3456899999999999999999999999999999998 45555555 68899999999977 8999999999999999
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE---EEEEecCCcc
Q 001321 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIFVGGGKDL 221 (1100)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~---~~~~~~~~~~ 221 (1100)
+++....... ..+..|. ..|.+++|+|...+.++++++.||.|++||+.+.. .....+|
T Consensus 85 d~~~~~~~~~---~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--- 146 (379)
T 3jrp_A 85 KEENGRWSQI---AVHAVHS------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH--- 146 (379)
T ss_dssp EEETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC---
T ss_pred EcCCCceeEe---eeecCCC------------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC---
Confidence 9986321122 2344444 88999999985338889999999999999998873 2334444
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-------------CCCEEEEEEcCCcEEEEecCCC
Q 001321 222 QLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-------------SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 222 ~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-------------dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.+++|. | ++.++++++.||.|++||+.++
T Consensus 147 ---------------------------~~~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 147 ---------------------------AIGVNSASWA-PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp ---------------------------TTCEEEEEEC-CCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred ---------------------------CCceEEEEEc-CccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence 7789999996 8 6999999999999999998643
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=1.3e-24 Score=253.37 Aligned_cols=196 Identities=14% Similarity=0.187 Sum_probs=158.8
Q ss_pred CCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCc-----eEEEeCCCCCCEEEEEEEe-CCCEEEEEECCCcEEEEEcCC
Q 001321 35 PATASILAFDHIQRLL-AIATLDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQ-NQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lL-A~gs~dG~I~vw~~~~~-----~~~~~~~h~~~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s 107 (1100)
......++++|+...+ ++|+.||.|+||+.... ......+|..+|.+++|+| ++.+|++++.|++|++||+.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3455679999987544 45788999999998553 2334568999999999999 899999999999999999998
Q ss_pred C-------ceeeee-ecCCCeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCeeeeeceee--cccccccccCCCCCCC
Q 001321 108 R-------SLACCL-KWESNITAFSVISGS-HFMYIGDENGLMSVIKYDADEGKLFQLPYNI--SADALSEKAGFPLLSH 176 (1100)
Q Consensus 108 ~-------~~l~~~-~~~~~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i--~~~~~~~~~~~~~~~~ 176 (1100)
+ +.+..+ .|...|++++|+|++ .++++|+.||.|+||++.. ++.. ..+ ..|.
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~---~~~~~~~~~------------ 176 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--GAAV---LTLGPDVHP------------ 176 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT--TEEE---EEECTTTCC------------
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--CCcc---EEEecCCCC------------
Confidence 7 334444 688999999999998 6999999999999999874 3433 224 4454
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe--cCCcccccccccCCCCCCCCccccCCCCCCCCCC-ceE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK-EIS 253 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~-~V~ 253 (1100)
..|.+++|+| ++.+|++++.||.|++||+.+++.+..+ +| .+ .+.
T Consensus 177 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------~~~~~~ 224 (402)
T 2aq5_A 177 DTIYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPH------------------------------EGTRPV 224 (402)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSS------------------------------CSSSCC
T ss_pred CceEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCC------------------------------CCCcce
Confidence 8899999988 6778999999999999999998876554 44 33 477
Q ss_pred EEEEecCCCCEEEEE---EcCCcEEEEecC
Q 001321 254 ALCWASSSGSILAVG---YIDGDILLWNTS 280 (1100)
Q Consensus 254 sl~w~spdg~~l~sg---~~DG~I~lWd~~ 280 (1100)
+++|. |++.+|++| +.||.|++||+.
T Consensus 225 ~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 225 HAVFV-SEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp EEEEC-STTEEEEEEECTTCCEEEEEEETT
T ss_pred EEEEc-CCCcEEEEeccCCCCceEEEEcCc
Confidence 88885 899988888 688999999875
No 107
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=4.2e-22 Score=261.01 Aligned_cols=441 Identities=11% Similarity=0.060 Sum_probs=292.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC------CcEEEEEcCC
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND------NEIQVWSLES 107 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d------~~I~vWd~~s 107 (1100)
...-+...+||| +.||.++. +.|++|+.++.+...+..|...|.+++|||||.+|+.++.+ ..|.+||+.+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~ 89 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 89 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC
Confidence 455688899996 58888875 79999999888888888999999999999999999988653 3799999999
Q ss_pred CceeeeeecCCCe-------EEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001321 108 RSLACCLKWESNI-------TAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 108 ~~~l~~~~~~~~V-------t~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
++......+...+ .+++|+|+++++++++.+ +...||.++...+.... +..
T Consensus 90 g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~-------------- 151 (1045)
T 1k32_A 90 GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNL-------------- 151 (1045)
T ss_dssp TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCS--------------
T ss_pred CCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecC--------------
Confidence 8865555677777 999999999977887765 55567777765555443 221
Q ss_pred CCeEEEEeccCCCCCEEEEEEc------------CCEEEEEEccC-CEEEEEecCCcccccccccCCCCCCCCccccCCC
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYE------------NALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~------------dg~V~lwdl~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~ 243 (1100)
.....++|+| | +++++.. +....+|.... ++...+.+|
T Consensus 152 ~~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~------------------------- 202 (1045)
T 1k32_A 152 GPATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM------------------------- 202 (1045)
T ss_dssp CSCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC-------------------------
T ss_pred CCcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC-------------------------
Confidence 2234566877 5 6777653 23456665332 555555566
Q ss_pred CCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCC
Q 001321 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRS 323 (1100)
Q Consensus 244 ~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~ 323 (1100)
...+.+++|. ++ ..++++..||.+.+|.+...... ...+.. . ..... .. .
T Consensus 203 -----~~~v~~~~~s-~d-~l~~~~~~dg~~~l~~~~~~g~~----------~~~l~~--~-~~~~~--~~--------~ 252 (1045)
T 1k32_A 203 -----STHVSSPVIV-GH-RIYFITDIDGFGQIYSTDLDGKD----------LRKHTS--F-TDYYP--RH--------L 252 (1045)
T ss_dssp -----SSCCEEEEEE-TT-EEEEEECTTSSCEEEEEETTSCS----------CEECCC--C-CSSCE--EE--------E
T ss_pred -----CCcccceEEe-CC-EEEEEEeccCceEEEEEeCCCCc----------ceEecC--C-CCcce--ee--------E
Confidence 7788999996 77 66677788899999987532110 011100 0 00011 11 3
Q ss_pred CCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeee-------eeecCCCcceeEEEc-cCCCCCCCCCcceEEEEe
Q 001321 324 NIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSR-------VDITLTGSFADMILL-SSAGATVGNHKADLFVLT 395 (1100)
Q Consensus 324 ~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~-------~~l~~~~~v~d~~~~-p~~~~~~~~~~~~l~vl~ 395 (1100)
+++++.++++... .+.++++ . ...+..... ........+..+.++ |++. .++..
T Consensus 253 SpDG~~la~~~~~-----~i~~~d~---~-~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~--------~la~~- 314 (1045)
T 1k32_A 253 NTDGRRILFSKGG-----SIYIFNP---D-TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD--------LIAFV- 314 (1045)
T ss_dssp EESSSCEEEEETT-----EEEEECT---T-TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG--------CEEEE-
T ss_pred cCCCCEEEEEeCC-----EEEEecC---C-ceEeeeeccCcccccccccccccccceeeecCCCCC--------EEEEE-
Confidence 4556666665322 2223322 1 111100000 000112246777777 6632 22222
Q ss_pred cCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCccc
Q 001321 396 SPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIK 475 (1100)
Q Consensus 396 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1100)
..+.++.++........
T Consensus 315 ~~~~i~~~~~~~~~~~~--------------------------------------------------------------- 331 (1045)
T 1k32_A 315 SRGQAFIQDVSGTYVLK--------------------------------------------------------------- 331 (1045)
T ss_dssp ETTEEEEECTTSSBEEE---------------------------------------------------------------
T ss_pred EcCEEEEEcCCCCceEE---------------------------------------------------------------
Confidence 25566655422111000
Q ss_pred ccccCCcccccCccccCCCCcEEEEEecCCcEE-EeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEE
Q 001321 476 WPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVR-IWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVG 554 (1100)
Q Consensus 476 ~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIr-iWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg 554 (1100)
+.++....+..+.++ +++.++.++.++.|. +||+..+... .+.+|...+.+++|+||+++||++
T Consensus 332 --~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~------------~l~~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 332 --VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE------------KFEENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp --CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE------------ECCCCCCSEEEEEECTTSSEEEEE
T ss_pred --ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce------------EecCCccceeeeEECCCCCEEEEE
Confidence 000000012233678 899999988888888 8998876643 233677889999999999999999
Q ss_pred ecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCC----------
Q 001321 555 NEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFEC---------- 624 (1100)
Q Consensus 555 ~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~d---------- 624 (1100)
+.++.|++|++.+.. .......|.+.|.+++|||||++||+++.+
T Consensus 397 ~~~~~v~~~d~~tg~-------------------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 397 NDRFEIMTVDLETGK-------------------------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp ETTSEEEEEETTTCC-------------------------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred CCCCeEEEEECCCCc-------------------------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 999999999997651 234445799999999999999999988764
Q ss_pred ceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCC
Q 001321 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1100)
Q Consensus 625 G~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~ 701 (1100)
+.|++||+.++++. .+..|...+.++.|++++.. |++++.++...+|+...
T Consensus 452 ~~i~l~d~~~g~~~----~l~~~~~~~~~~~~spdG~~----------------------l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 452 QAIHVYDMEGRKIF----AATTENSHDYAPAFDADSKN----------------------LYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEEEEETTTTEEE----ECSCSSSBEEEEEECTTSCE----------------------EEEEESCCCCCEECSSS
T ss_pred CeEEEEECCCCcEE----EeeCCCcccCCceEcCCCCE----------------------EEEEecccCCcCcchhc
Confidence 49999999998744 44568888999999866644 88888989899998553
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-23 Score=247.15 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=124.7
Q ss_pred CCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc---eeeeeec------------------------------------
Q 001321 76 QLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS---LACCLKW------------------------------------ 116 (1100)
Q Consensus 76 ~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~---~l~~~~~------------------------------------ 116 (1100)
..|+.+++|+++|.+|+++ .++.|.+||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3589999999999855555 58899999999998 5555432
Q ss_pred -------------------CCCeEEEEEecCCCEE-EEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001321 117 -------------------ESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 117 -------------------~~~Vt~~~~s~~~~~l-~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
.+.|++++|+|++++| ++|+.||.|+||+++...+..... +....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~------------ 149 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFS------------ 149 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECS------------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCC------------
Confidence 1259999999999996 899999999999998423333322 1111222
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE-----EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII-----FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~-----~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~ 251 (1100)
..|.+++|+| ++.+|++++.+|.|.+|++.++... ...+| ...
T Consensus 150 ~~v~~~~~sp--~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h------------------------------~~~ 197 (450)
T 2vdu_B 150 KRPNAISIAE--DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH------------------------------VSM 197 (450)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC------------------------------SSC
T ss_pred CCceEEEEcC--CCCEEEEEeCCCcEEEEecCCcccccccceeeecc------------------------------cCc
Confidence 7899999988 6888999999999999999876532 12223 778
Q ss_pred eEEEEEecCC---CCEEEEEEcCCcEEEEecCCC
Q 001321 252 ISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 252 V~sl~w~spd---g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
|++++|. |+ +.+|++|+.|+.|++||+.++
T Consensus 198 v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 198 LTDVHLI-KDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEEE-ECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred eEEEEEc-CCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 9999996 99 999999999999999998644
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=2.7e-23 Score=244.66 Aligned_cols=213 Identities=11% Similarity=0.138 Sum_probs=159.1
Q ss_pred ccceeeeecCCCCCeEEEEEcCCC----------CEEEEEECC----CeEEEEeCC------------------------
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQ----------RLLAIATLD----GRIKVIGGD------------------------ 65 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~----------~lLA~gs~d----G~I~vw~~~------------------------ 65 (1100)
+-++...++-..-+..++.|-|+. .++++||.. ..|+|+...
T Consensus 34 ~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~ 113 (430)
T 2xyi_A 34 FLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFG 113 (430)
T ss_dssp HHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----------------------
T ss_pred HHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccccccccccccccc
Confidence 445556666667777889999876 468888864 567777432
Q ss_pred ----CceEEEeCCCCCCEEEEEEEeC-CCEEEEEECCCcEEEEEcCC----------Cceeeee-ecCCCeEEEEEecCC
Q 001321 66 ----GIEGLLISPSQLPYKNLEFLQN-QGFLISITNDNEIQVWSLES----------RSLACCL-KWESNITAFSVISGS 129 (1100)
Q Consensus 66 ----~~~~~~~~~h~~~V~~l~fs~d-~~~Lls~s~d~~I~vWd~~s----------~~~l~~~-~~~~~Vt~~~~s~~~ 129 (1100)
.........|.++|.+++|+|+ +.+|++++.++.|.+||+.+ .+.+..+ .|...|++++|+|++
T Consensus 114 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 114 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp ----CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred CCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence 1223456789999999999997 67888999999999999986 3444444 788899999999999
Q ss_pred C-EEEEEeCCCcEEEEEEecCCC--eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEE
Q 001321 130 H-FMYIGDENGLMSVIKYDADEG--KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 130 ~-~l~~G~~dG~V~Iw~~d~~~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwd 206 (1100)
. +|++|+.+|.|++|++..... ........+..|. ..|.+++|+|. .+..+++++.||.|++||
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~------------~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT------------AVVEDVAWHLL-HESLFGSVADDQKLMIWD 260 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC------------CCEeeeEEeCC-CCCEEEEEeCCCeEEEEE
Confidence 8 999999999999999875221 1111112233444 78999999985 466789999999999999
Q ss_pred ccCCE---E-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEEecC
Q 001321 207 VSEAQ---I-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 207 l~~~~---~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lWd~~ 280 (1100)
+.++. . .....| ...|++++|. |++. .+++|+.||.|++||+.
T Consensus 261 ~~~~~~~~~~~~~~~~------------------------------~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAH------------------------------TAEVNCLSFN-PYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp TTCSCSSSCSEEEECC------------------------------SSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred CCCCCCCcceeEeecC------------------------------CCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCC
Confidence 98762 2 223344 6778888885 8776 57788888888888874
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=1.4e-23 Score=240.45 Aligned_cols=192 Identities=9% Similarity=0.160 Sum_probs=143.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEE-EEECCCcEEEEEcCCCce
Q 001321 32 YGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLI-SITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Ll-s~s~d~~I~vWd~~s~~~ 110 (1100)
.+|...|.+++|+|++++||+|+.+| ++||+.+..+......+. .+..++|.+++.+++ +++.|++|++||+.+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 56789999999999999999999776 789999776665544443 588889998888774 556688999999999999
Q ss_pred eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 111 ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 111 l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
+..+.+...|.+++++++. ++++ .++.|+||++......+.. +.. . ..+. +++|
T Consensus 94 ~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~----~~~-~------------~~~~--~~s~---- 147 (355)
T 3vu4_A 94 VSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITD----DIR-F------------GGVC--EFSN---- 147 (355)
T ss_dssp EEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSC----CEE-E------------EEEE--EEET----
T ss_pred EEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEE----ecc-C------------CceE--EEEc----
Confidence 9999999999999998764 4444 3778999998753111111 111 1 2233 4444
Q ss_pred CEEEE--EEcCCEEEEEEccCCE-----------------EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001321 191 NRVLI--AYENALVILWDVSEAQ-----------------IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1100)
Q Consensus 191 ~~ll~--~~~dg~V~lwdl~~~~-----------------~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~ 251 (1100)
..+++ |+.+|.|++||+.++. +..+.+| ...
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h------------------------------~~~ 197 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH------------------------------TNP 197 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCC------------------------------SSC
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc------------------------------CCc
Confidence 34665 5789999999999865 3334444 889
Q ss_pred eEEEEEecCCCCEEEEEEcCCc-EEEEecCCC
Q 001321 252 ISALCWASSSGSILAVGYIDGD-ILLWNTSTT 282 (1100)
Q Consensus 252 V~sl~w~spdg~~l~sg~~DG~-I~lWd~~~~ 282 (1100)
|++++|. |+|.+|++|+.||+ |++||+.++
T Consensus 198 v~~~~~s-~~g~~l~s~s~d~~~v~iwd~~~~ 228 (355)
T 3vu4_A 198 IKMVRLN-RKSDMVATCSQDGTIIRVFKTEDG 228 (355)
T ss_dssp EEEEEEC-TTSSEEEEEETTCSEEEEEETTTC
T ss_pred eEEEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 9999985 99999999999998 999998754
No 111
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=1.3e-23 Score=244.12 Aligned_cols=184 Identities=14% Similarity=0.083 Sum_probs=118.0
Q ss_pred CCCCeEEEEEc---CCC-CEEEEEECCCeEEEEeCCCce----------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCc
Q 001321 34 IPATASILAFD---HIQ-RLLAIATLDGRIKVIGGDGIE----------GLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 34 ~~~~v~~la~s---p~~-~lLA~gs~dG~I~vw~~~~~~----------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
++..+.+++|. |++ .++|+|. |+.|++|...... .+....+..++..+.|++.
T Consensus 14 l~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 80 (393)
T 4gq1_A 14 LNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSS------------ 80 (393)
T ss_dssp TTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTT------------
T ss_pred CCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCC------------
Confidence 34456666663 433 5666665 7889999752211 1111223333444433332
Q ss_pred EEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 100 IQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
.......+...+....+.+++.++++|+.|++|+||+.+..+.........+.+|. +.|
T Consensus 81 ---------~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~------------~~v 139 (393)
T 4gq1_A 81 ---------CSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHH------------NFV 139 (393)
T ss_dssp ---------CEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCS------------SCE
T ss_pred ---------ccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCC------------Cce
Confidence 12222234455566667788889999999999999998863211111111244555 899
Q ss_pred EEEEeccC------CCCCEEEEEEcCCEEEEEEccCCE-EEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCce
Q 001321 180 VGVLPHPN------SSGNRVLIAYENALVILWDVSEAQ-IIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1100)
Q Consensus 180 ~sv~f~P~------~~g~~ll~~~~dg~V~lwdl~~~~-~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V 252 (1100)
.+|+|+|. .++++|++++.|++|+|||+.++. +...++| ...|
T Consensus 140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~------------------------------~~~v 189 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL------------------------------SSPG 189 (393)
T ss_dssp EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC------------------------------SSCE
T ss_pred EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC------------------------------CCCc
Confidence 99999873 257789999999999999998775 4556666 7789
Q ss_pred EEEEEecCCCC-EEEEEEcCCcEEEEecCCC
Q 001321 253 SALCWASSSGS-ILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 253 ~sl~w~spdg~-~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+++|+ |++. +|++|+.||+|++||+.++
T Consensus 190 ~~v~~~-p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 190 ISVQFR-PSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEEEEE-TTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEEEEC-CCCCceEEecCCCCEEEEEECCCC
Confidence 999997 8874 7999999999999999766
No 112
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=6.7e-22 Score=259.04 Aligned_cols=377 Identities=14% Similarity=0.086 Sum_probs=251.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECC------CeEEEEeCCCceEEEeCCCCCCE-------EEEEEEeCCCEEEEEECC
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQLPY-------KNLEFLQNQGFLISITND 97 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~d------G~I~vw~~~~~~~~~~~~h~~~V-------~~l~fs~d~~~Lls~s~d 97 (1100)
..+++..+.+++|||||++||.++.+ +.|++|+..+.+...+..|...+ ..++|+|||..+++.+.+
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~ 127 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM 127 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCc
Confidence 34678899999999999999988754 48999999888888888898888 999999999866666643
Q ss_pred ------CcEEEEEcCCCceeeee--------------------------------------------------ecCCCeE
Q 001321 98 ------NEIQVWSLESRSLACCL--------------------------------------------------KWESNIT 121 (1100)
Q Consensus 98 ------~~I~vWd~~s~~~l~~~--------------------------------------------------~~~~~Vt 121 (1100)
..|.+||+.+++..... .|.+.+.
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~ 207 (1045)
T 1k32_A 128 QPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVS 207 (1045)
T ss_dssp SSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCE
T ss_pred CCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCccc
Confidence 35888888776533211 2344566
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCE
Q 001321 122 AFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENAL 201 (1100)
Q Consensus 122 ~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~ 201 (1100)
++.|+++ .++++++.+|.+.||.++...+.... +..+ ..+..++|+| +|++++.+ .++.
T Consensus 208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~----l~~~-------------~~~~~~~~Sp--DG~~la~~-~~~~ 266 (1045)
T 1k32_A 208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRK----HTSF-------------TDYYPRHLNT--DGRRILFS-KGGS 266 (1045)
T ss_dssp EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEE----CCCC-------------CSSCEEEEEE--SSSCEEEE-ETTE
T ss_pred ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceE----ecCC-------------CCcceeeEcC--CCCEEEEE-eCCE
Confidence 7777776 56667777888888888765444332 2221 2345668888 68767776 5899
Q ss_pred EEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec-CCCCEEEEEEcCCcEEEEecC
Q 001321 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS-SSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 202 V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s-pdg~~l~sg~~DG~I~lWd~~ 280 (1100)
|.+||+....+..+.++. ... ... .......+.+++| + |||++|++++ ++.|.+|+..
T Consensus 267 i~~~d~~~~~l~~l~~~~-~~~----------~~~--------~~~~~~~v~~~~~-S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 267 IYIFNPDTEKIEKIEIGD-LES----------PED--------RIISIPSKFAEDF-SPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEECTTTCCEEECCCCC-CCB----------CCS--------EEEECGGGGEEEE-EECGGGCEEEEE-TTEEEEECTT
T ss_pred EEEecCCceEeeeeccCc-ccc----------ccc--------ccccccccceeee-cCCCCCEEEEEE-cCEEEEEcCC
Confidence 999999655554222210 000 000 0001346888997 8 9999999887 8899999987
Q ss_pred CCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceee
Q 001321 281 TTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCV 360 (1100)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~ 360 (1100)
++.. ..+. .. ....+..+ +.+ +++.+++++.+
T Consensus 326 ~~~~------------~~~~--~~-~~~~~~~~--------~~s-dg~~l~~~s~~------------------------ 357 (1045)
T 1k32_A 326 GTYV------------LKVP--EP-LRIRYVRR--------GGD-TKVAFIHGTRE------------------------ 357 (1045)
T ss_dssp SSBE------------EECS--CC-SCEEEEEE--------CSS-SEEEEEEEETT------------------------
T ss_pred CCce------------EEcc--CC-CcceEEee--------eEc-CCCeEEEEECC------------------------
Confidence 5421 1110 00 00012222 244 55555554332
Q ss_pred eeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeee-EeecCceeEeeeccCCCCCCCCccCCcccccCCCceEE
Q 001321 361 SRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLH-FYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTV 439 (1100)
Q Consensus 361 ~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~-~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~ 439 (1100)
+.+. +|+.......
T Consensus 358 -------------------------------------~~l~~~~d~~~~~~~---------------------------- 372 (1045)
T 1k32_A 358 -------------------------------------GDFLGIYDYRTGKAE---------------------------- 372 (1045)
T ss_dssp -------------------------------------EEEEEEEETTTCCEE----------------------------
T ss_pred -------------------------------------CceEEEEECCCCCce----------------------------
Confidence 1111 2221000000
Q ss_pred EEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeE
Q 001321 440 AEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKL 519 (1100)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~ 519 (1100)
.+. ++...+..++++|+++.|++++.++.|++||+.++.+.
T Consensus 373 -------------------------------------~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~- 413 (1045)
T 1k32_A 373 -------------------------------------KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT- 413 (1045)
T ss_dssp -------------------------------------ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-
T ss_pred -------------------------------------Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE-
Confidence 011 11112233478999999999999999999999988765
Q ss_pred EeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCc----------eEEEEEecCCCCCcceeeeccCCCceeeccC
Q 001321 520 ICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFG----------LVYIYNLNGSLDAKNFLFVLETKSEVHALPE 589 (1100)
Q Consensus 520 ~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG----------~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~ 589 (1100)
....+|...|.+++|+|||++|++++.++ .|++|++.+.
T Consensus 414 ----------~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------------------- 462 (1045)
T 1k32_A 414 ----------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------------------- 462 (1045)
T ss_dssp ----------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------------------
T ss_pred ----------EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC---------------------
Confidence 22446778899999999999999887754 8999998764
Q ss_pred CCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCceE
Q 001321 590 GKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLLSV 637 (1100)
Q Consensus 590 ~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~ 637 (1100)
....+..|...+.+++|+|+|++|++++.++...+|+.....+
T Consensus 463 -----~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 463 -----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp -----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred -----cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 1344567788899999999999999999988888898765544
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=2.6e-22 Score=236.00 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=147.9
Q ss_pred CCCCeEEEE---EcCCCCEEEEEECC--------------C--eEEEEeCCCc--eEEEeCCCCCCEEEEEEEeCCCEEE
Q 001321 34 IPATASILA---FDHIQRLLAIATLD--------------G--RIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLI 92 (1100)
Q Consensus 34 ~~~~v~~la---~sp~~~lLA~gs~d--------------G--~I~vw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~Ll 92 (1100)
....+..++ |+|++..+.+.+.. | .|.+|+.... ..+........+.+++|+|++.+++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAI 138 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEE
Confidence 345667788 99998887765432 2 4444444322 3443344445567999999766667
Q ss_pred EEECCCcEEEEEcCCCceeeee------ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001321 93 SITNDNEIQVWSLESRSLACCL------KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1100)
Q Consensus 93 s~s~d~~I~vWd~~s~~~l~~~------~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~ 166 (1100)
+++.++.|.+||+.+++..... .|.+.|++++|++++.++++++.+|.|++|+++. ++... .+..+.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~--~~~~~---~~~~~~-- 211 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT--LAYKA---TVDLTG-- 211 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--CCEEE---EEECSS--
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--ceEEE---EEcCCC--
Confidence 7777889999999999887633 4567899999999999999999999999999764 33332 244444
Q ss_pred cccCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCC
Q 001321 167 EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1100)
Q Consensus 167 ~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~ 245 (1100)
..+.+++|+| ++.+++++. .++.|++||+.+++....+.+
T Consensus 212 ----------~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--------------------------- 252 (433)
T 3bws_A 212 ----------KWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK--------------------------- 252 (433)
T ss_dssp ----------SSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC---------------------------
T ss_pred ----------CCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC---------------------------
Confidence 6799999988 677675555 789999999999987766543
Q ss_pred CCCCCceEEEEEecCCCCEEEEEE--------cCCcEEEEecCCC
Q 001321 246 QPEEKEISALCWASSSGSILAVGY--------IDGDILLWNTSTT 282 (1100)
Q Consensus 246 ~~~~~~V~sl~w~spdg~~l~sg~--------~DG~I~lWd~~~~ 282 (1100)
...+.+++|. |+|..+++++ .||.|++||+.++
T Consensus 253 ---~~~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 253 ---IGLPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp ---CSEEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred ---CCCceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 4568899985 9999999988 4889999998643
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.92 E-value=4.8e-23 Score=235.89 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=85.6
Q ss_pred EecCCcEEEeeCCCCceeEEeeecc-----ceeeeeecCCCCCeeEEEEeeCCCeEEEEecCce-EEEEEecCCCCCcce
Q 001321 501 GYHDGSVRIWDATYPVFKLICALDA-----EVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGL-VYIYNLNGSLDAKNF 574 (1100)
Q Consensus 501 g~~DGtIriWd~~~~~l~~~~~l~~-----~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~-V~lw~l~~~~~~~~~ 574 (1100)
|+.||+|++||+..+........+. ......+.+|..+|++++|+|++.+||+|+.||+ |+||++.+.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~------ 228 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG------ 228 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC------
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC------
Confidence 6889999999998754100000000 0001347799999999999999999999999998 999999865
Q ss_pred eeeccCCCceeeccCCCcceeEEEEe-e-cCcCeEEEEEcCCCCEEEEEeCCceEEEEecCCc
Q 001321 575 LFVLETKSEVHALPEGKISLCRAVFS-L-VNSPVRALQFTSSGAKLAVGFECGRVAVLDMNLL 635 (1100)
Q Consensus 575 ~~~~~~~~~~~~i~~~~~~~~~~~~~-~-h~~~VtsLafSp~g~~LavGs~dG~V~vwD~~~~ 635 (1100)
.++..+. + |.++|++++|+|+|++|++|+.||+|+|||++.+
T Consensus 229 -------------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 229 -------------------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp -------------------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred -------------------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 2456666 5 9999999999999999999999999999999865
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.2e-24 Score=268.13 Aligned_cols=206 Identities=15% Similarity=0.228 Sum_probs=170.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC---ceEEEeCCCCCCEEEEEEEeC--CCEEEEEECCCcEEEEEc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG---IEGLLISPSQLPYKNLEFLQN--QGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~---~~~~~~~~h~~~V~~l~fs~d--~~~Lls~s~d~~I~vWd~ 105 (1100)
..||.+.|++++|+|++++||+|+.||.|+||+... .......+|..+|.+++|+++ +.+|++++.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 468999999999999999999999999999999853 233456789999999999988 899999999999999999
Q ss_pred CCCc--eeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 106 ESRS--LACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 106 ~s~~--~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.+++ .+..+ .|...|++++|+|+ +.++++|+.||.|++|++........ ..+.+|. ..|.
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~---~~~~~~~------------~~v~ 149 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP---IIIDAHA------------IGVN 149 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC---EEEECCS------------SCEE
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce---eEeecCC------------CceE
Confidence 9986 33333 67889999999999 99999999999999999876422222 2344444 8899
Q ss_pred EEEeccCC-----------CCCEEEEEEcCCEEEEEEccCC----EEE-EEecCCcccccccccCCCCCCCCccccCCCC
Q 001321 181 GVLPHPNS-----------SGNRVLIAYENALVILWDVSEA----QII-FVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 181 sv~f~P~~-----------~g~~ll~~~~dg~V~lwdl~~~----~~~-~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
++.|+|.. ++..+++|+.||.|++||+.++ .+. ...+|
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-------------------------- 203 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-------------------------- 203 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--------------------------
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--------------------------
Confidence 99999842 3667999999999999999876 232 23344
Q ss_pred CCCCCCceEEEEEecCC---CCEEEEEEcCCcEEEEecCCC
Q 001321 245 HQPEEKEISALCWASSS---GSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spd---g~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|++++|. |+ +.++++|+.||.|++||+.++
T Consensus 204 ----~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 204 ----SDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ----SSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred ----CCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCC
Confidence 7889999996 99 899999999999999998654
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-23 Score=244.13 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=203.2
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
...+-...|.+|+|+|||.++++++.|++|+ |...++.+ -.|+..|.+++|+|++ .++.+.+|+.+
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~--- 75 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFELAQ--- 75 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSCCC---
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEeCC---
Confidence 3445667899999999999999999999999 86666555 3788999999999999 45544444322
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCC
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDS 230 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~ 230 (1100)
+... ..+.. . ..|.+++|+| +|.+|++++.||.|++||..+ +...+.|.. . +
T Consensus 76 ~~~~---~~~~~-~------------~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~-~----~--- 127 (588)
T 2j04_A 76 QNGL---LNSQP-V------------CYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLDSKG-N----L--- 127 (588)
T ss_dssp SSCS---STTSC-S------------CCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECCCSS-C----S---
T ss_pred CceE---eecCC-C------------CcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeeccCCC-c----c---
Confidence 2222 11111 2 7899999988 788899999999999999654 333322300 0 0
Q ss_pred CCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcce
Q 001321 231 PSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPV 310 (1100)
Q Consensus 231 ~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 310 (1100)
....|.+++|. |||++|++|+.||+|++||+.++.... + .+
T Consensus 128 -----------------~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~--------~-------------~~ 168 (588)
T 2j04_A 128 -----------------SSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENT--------P-------------EF 168 (588)
T ss_dssp -----------------TTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTC--------C-------------CC
T ss_pred -----------------ccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCcccc--------c-------------cc
Confidence 03469999985 999999999999999999987541100 0 00
Q ss_pred EEEEecccccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcce
Q 001321 311 IVLHWSTNKESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKAD 390 (1100)
Q Consensus 311 ~~~~w~~~~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~ 390 (1100)
..+ ..+..
T Consensus 169 i~l------------------------------~ti~~------------------------------------------ 176 (588)
T 2j04_A 169 YFE------------------------------SSIRL------------------------------------------ 176 (588)
T ss_dssp EEE------------------------------EEEEC------------------------------------------
T ss_pred eee------------------------------eeeec------------------------------------------
Confidence 000 00000
Q ss_pred EEEEecCCeeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcc
Q 001321 391 LFVLTSPGQLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQ 470 (1100)
Q Consensus 391 l~vl~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1100)
T Consensus 177 -------------------------------------------------------------------------------- 176 (588)
T 2j04_A 177 -------------------------------------------------------------------------------- 176 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccccccCCcccccCccccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeee-cCCCCCeeEEEEeeCCC
Q 001321 471 AGHIKWPLSGGVPSPVPITKCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAPVSTLSFCFINS 549 (1100)
Q Consensus 471 ~~~~~~pl~GG~~~~~~~~~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~Vt~lafspd~~ 549 (1100)
..+||...+..++++|++ +++++.|++||+||+..+.+. .+. ..+ .+|...|.+++|+ +.
T Consensus 177 -------~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~-------~~~-~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 177 -------SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ-------PVS-RMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp -------SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC-------CCE-EEEECCCSSCCCCEEEE--TT
T ss_pred -------ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc-------cce-eeecccccCcEEEEEEE--CC
Confidence 001122223344788888 888999999999999877632 000 124 4788899999999 68
Q ss_pred eEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEE--cCCCCEEEEEeCCceE
Q 001321 550 SLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQF--TSSGAKLAVGFECGRV 627 (1100)
Q Consensus 550 ~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLaf--Sp~g~~LavGs~dG~V 627 (1100)
.||+++ +|.|++|++.+.. ......+|.+.|..++| +|++..|+++++||+
T Consensus 238 ~LASa~-~~tIkLWd~~~~~-------------------------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYS-------------------------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTE-------------------------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred EEEEEe-CCeEEEEECCCCe-------------------------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 999887 6999999998751 21223389999999999 999999999999999
Q ss_pred EEEecC
Q 001321 628 AVLDMN 633 (1100)
Q Consensus 628 ~vwD~~ 633 (1100)
+||...
T Consensus 291 klw~~d 296 (588)
T 2j04_A 291 KVLLED 296 (588)
T ss_dssp EEEESS
T ss_pred EEEeec
Confidence 999987
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.91 E-value=1.2e-21 Score=227.00 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=148.0
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEE-EEEECCCcEEEEEcCCCceeeeeecCCCeEEEEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLESRSLACCLKWESNITAFSV 125 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~L-ls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~ 125 (1100)
+.++++++.||.|++|+....+.+....+...+.+++|+|++.+| ++++.++.|++||+.+++.+..+.....+.+++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 347888999999999999877776655555679999999999987 5666899999999999999998888889999999
Q ss_pred ecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE-EEEEcCCEEE
Q 001321 126 ISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV-LIAYENALVI 203 (1100)
Q Consensus 126 s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l-l~~~~dg~V~ 203 (1100)
+|+++++++++ .++.|++|++.. ++.... +..+ ..+.+++|+| +++++ ++++.++.|+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~s~--dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTS--NTVAGT---VKTG-------------KSPLGLALSP--DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT--TEEEEE---EECS-------------SSEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCCCEEEEEECCCCEEEEEECCC--CeEEEE---EeCC-------------CCcceEEECC--CCCEEEEEeCCCCEEE
Confidence 99999886555 679999998764 444421 3221 5689999988 67766 5777799999
Q ss_pred EEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEE-EEEEcCCcEEEEecCCC
Q 001321 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 204 lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l-~sg~~DG~I~lWd~~~~ 282 (1100)
+||+.+++....... ...+.+++|. |+|.++ ++++.||.|++||+.++
T Consensus 142 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 142 VINTVTKAVINTVSV------------------------------GRSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp EEETTTTEEEEEEEC------------------------------CSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCcEEEEEec------------------------------CCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 999999987765543 3456888985 999887 57778999999998643
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-22 Score=240.35 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=159.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce---EE-EeC-------------------------------------
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIE---GL-LIS------------------------------------- 73 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~---~~-~~~------------------------------------- 73 (1100)
...+.|++|+|++++|+++ .++.|++|+....+ .+ ...
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977766 57899999974443 21 111
Q ss_pred -----------------CCCCCEEEEEEEeCCCEE-EEEECCCcEEEEEcC--CCceeeee---ecCCCeEEEEEecCCC
Q 001321 74 -----------------PSQLPYKNLEFLQNQGFL-ISITNDNEIQVWSLE--SRSLACCL---KWESNITAFSVISGSH 130 (1100)
Q Consensus 74 -----------------~h~~~V~~l~fs~d~~~L-ls~s~d~~I~vWd~~--s~~~l~~~---~~~~~Vt~~~~s~~~~ 130 (1100)
+|...|.+++|+|++.+| ++++.|+.|++||+. +++.+..+ .+...|++++|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 344479999999999997 788899999999999 78777665 5678999999999999
Q ss_pred EEEEEeCCCcEEEEEEecCCCeeee-eceeecccccccccCCCCCCCCCeEEEEeccC-CCCCEEEEEEcCCEEEEEEcc
Q 001321 131 FMYIGDENGLMSVIKYDADEGKLFQ-LPYNISADALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 131 ~l~~G~~dG~V~Iw~~d~~~~~l~~-~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~-~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
+|++|+.+|.|++|++.... ... ....+.+|. ..|.+++|+|. +.+.+|++++.|+.|++||+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~--~~~~~~~~~~~h~------------~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIP--EEKFTQEPILGHV------------SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp EEEEEETTSEEEEEETTSCC--CSSCCCCCSEECS------------SCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred EEEEEeCCCcEEEEecCCcc--cccccceeeeccc------------CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 99999999999888865422 211 001234444 88999999993 127789999999999999999
Q ss_pred CCEEEEE--ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 209 EAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 209 ~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+++.+.. .+| ...|.+++|. ++.+|++++.||.|++||+.++
T Consensus 229 ~~~~~~~~~~~h------------------------------~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 229 QCFIVDKWLFGH------------------------------KHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CTTCEEEECCCC------------------------------SSCEEEEEEC--STTEEEEEESSSEEEEEETTTC
T ss_pred CCceeeeeecCC------------------------------CCceEEEEEC--CCCEEEEEeCCCeEEEEECCCC
Confidence 8865543 245 7889999984 9999999999999999999866
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=2.8e-23 Score=241.39 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=146.4
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc---------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCc
Q 001321 29 AVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI---------EGLLISPSQLPYKNLEFLQNQGFLISITNDNE 99 (1100)
Q Consensus 29 ~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~---------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~ 99 (1100)
...+|+...|..+.++++....+.+.....++.|..... .......|...+....+.+++.+|++++.|++
T Consensus 33 l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~ 112 (393)
T 4gq1_A 33 LLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNT 112 (393)
T ss_dssp EEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETTSC
T ss_pred EEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCCCc
Confidence 355678888888888776655555554555555554221 22233445566677777888889999999999
Q ss_pred EEEEEcCCCceeee-----e-ecCCCeEEEEEec--------CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc
Q 001321 100 IQVWSLESRSLACC-----L-KWESNITAFSVIS--------GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1100)
Q Consensus 100 I~vWd~~s~~~l~~-----~-~~~~~Vt~~~~s~--------~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~ 165 (1100)
|++||+.++..... + .|.+.|++++|+| ++++|++|+.|++|+||++... ... ..+..|.
T Consensus 113 v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~~~---~~~~~~~- 186 (393)
T 4gq1_A 113 VRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--GPI---LAGYPLS- 186 (393)
T ss_dssp EEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--EEE---EEEEECS-
T ss_pred EEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--cee---eeecCCC-
Confidence 99999999865432 2 5788999999998 7889999999999999999753 222 1133343
Q ss_pred ccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecC-CcccccccccCCCCCCCCccccCCCC
Q 001321 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 166 ~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
.+|.+++|+|. ++.+|++++.||+|++||+.+++......+ .......... ...........
T Consensus 187 -----------~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~~~ 249 (393)
T 4gq1_A 187 -----------SPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT-----LNTLPLVNTCH 249 (393)
T ss_dssp -----------SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE-----EESGGGC----
T ss_pred -----------CCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe-----cccccceeeee
Confidence 78999999995 345699999999999999998865432221 0000000000 00000000011
Q ss_pred CCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 245 HQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...+...|.++.|..|+|..|++++.|+++++||+..+
T Consensus 250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 11236788899988899999999999999999998755
No 120
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=2.7e-23 Score=242.23 Aligned_cols=156 Identities=10% Similarity=0.000 Sum_probs=118.0
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeee-cCCCCC-eeEEEEeeCCCeEEEE---ecCceEEEEE
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEV-AGSRAP-VSTLSFCFINSSLAVG---NEFGLVYIYN 564 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l-~~h~~~-Vt~lafspd~~~Lasg---~~dG~V~lw~ 564 (1100)
++++++++|++++.||.|++||+..+... ..+ ..|... +.+++|+|++.+|++| +.||.|++|+
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd 251 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVV-----------AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD 251 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEE-----------EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCcee-----------eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence 56678889999999999999999887644 223 466555 9999999999999999 7999999999
Q ss_pred ecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEE-EEeCCceEEEEecCCceE-EEEee
Q 001321 565 LNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLA-VGFECGRVAVLDMNLLSV-LFFTD 642 (1100)
Q Consensus 565 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~La-vGs~dG~V~vwD~~~~~~-~~~~~ 642 (1100)
+...... .......|...|.+++|+|++++|+ +|+.||.|++||+.+++. +....
T Consensus 252 ~~~~~~~-----------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 252 TKHLEEP-----------------------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TTBCSSC-----------------------SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CccccCC-----------------------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9875221 1112235778899999999999886 566899999999998762 22222
Q ss_pred cCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCcc
Q 001321 643 DISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENM 704 (1100)
Q Consensus 643 ~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~ 704 (1100)
.. .|..+|.+++|++.+.. ++ +.++.+.+|+..++.+
T Consensus 309 ~~-~~~~~v~~~~~sp~~~~----------------------~~--s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 309 MF-SSKESQRGMGYMPKRGL----------------------EV--NKCEIARFYKLHERKC 345 (402)
T ss_dssp EE-CCSSCCSEEEECCGGGS----------------------CG--GGTEEEEEEEEETTEE
T ss_pred cc-ccCCcccceEEeccccc----------------------ce--ecceeEEEEEcCCCcE
Confidence 21 27799999999976543 33 4677999999665543
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.91 E-value=3.4e-22 Score=235.27 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=123.8
Q ss_pred ccCC-CCcEEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCC-eEEEEecCceEEEEEecC
Q 001321 490 KCHS-VDRVYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINS-SLAVGNEFGLVYIYNLNG 567 (1100)
Q Consensus 490 ~~s~-~~~~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~-~Lasg~~dG~V~lw~l~~ 567 (1100)
+++| ++.++++++.||.|++||+..+... ... ..+..|...|++|+|+|++. +|++|+.||.|++|++..
T Consensus 238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-------~~~-~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTS-------KPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCSCSS-------SCS-EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCCC-------cce-eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 3444 5568999999999999999876310 000 23558889999999999987 688999999999999986
Q ss_pred CCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC-EEEEEeCCceEEEEecCC------------
Q 001321 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA-KLAVGFECGRVAVLDMNL------------ 634 (1100)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~-~LavGs~dG~V~vwD~~~------------ 634 (1100)
... ++..+..|.++|++++|+|++. +|++|+.||.|+|||+..
T Consensus 310 ~~~------------------------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 310 LKL------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp TTS------------------------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCC------------------------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 321 3466778999999999999994 799999999999999987
Q ss_pred --ceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCC
Q 001321 635 --LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSS 701 (1100)
Q Consensus 635 --~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~ 701 (1100)
+.+++ ...+|...|.+++|++.+. .+|++++.||.|.+|+...
T Consensus 366 ~~~~~~~---~~~~h~~~v~~~~~~p~~~---------------------~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 366 GPPELLF---IHGGHTAKISDFSWNPNEP---------------------WIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCTTEEE---ECCCCSSCEEEEEECSSST---------------------TEEEEEETTSEEEEEEECH
T ss_pred CCcceEE---EcCCCCCCceEEEECCCCC---------------------CEEEEEECCCCEEEeEccc
Confidence 34542 3346999999999985442 3699999999999999443
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.4e-23 Score=257.77 Aligned_cols=166 Identities=14% Similarity=0.174 Sum_probs=134.9
Q ss_pred EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC--CCceeeee-ecCCCeEEEEEecC--CCEEEEEeCCCcEEEEE
Q 001321 71 LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCL-KWESNITAFSVISG--SHFMYIGDENGLMSVIK 145 (1100)
Q Consensus 71 ~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~--s~~~l~~~-~~~~~Vt~~~~s~~--~~~l~~G~~dG~V~Iw~ 145 (1100)
...+|.++|++++|+|++.+|++++.||.|+|||+. +++.+..+ .|.+.|++++|+++ ++++++|+.||.|++|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 457899999999999999999999999999999998 44555555 68899999999988 99999999999999999
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCE---EEEEecCCccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQ---IIFVGGGKDLQ 222 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~---~~~~~~~~~~~ 222 (1100)
++..+.... ..+..|. ..|.+++|+|...+..+++++.||.|++||+.++. .....+|
T Consensus 84 ~~~~~~~~~---~~~~~h~------------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~---- 144 (753)
T 3jro_A 84 EENGRWSQI---AVHAVHS------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH---- 144 (753)
T ss_dssp EETTEEEEE---EEECCCS------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC----
T ss_pred CCCCccccc---ccccCCC------------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC----
Confidence 986321122 3355555 88999999985338889999999999999998872 2334444
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-------------CCCEEEEEEcCCcEEEEecCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-------------SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-------------dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...|.+++|. | ++..+++|+.||.|++||+.++
T Consensus 145 --------------------------~~~v~~l~~~-p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 145 --------------------------AIGVNSASWA-PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp --------------------------SSCEEEEEEC-CCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred --------------------------CCceEEEEec-CcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 7789999986 7 5899999999999999998643
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-22 Score=229.36 Aligned_cols=159 Identities=9% Similarity=0.071 Sum_probs=117.5
Q ss_pred EEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccc
Q 001321 84 FLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISAD 163 (1100)
Q Consensus 84 fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~ 163 (1100)
+.+++.+|++++.|++|++||+.+++.+..+. ...|.++.++|. +++|+.|++|++|+.+. .+.. |.+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~---~~~~--~~~~~~ 114 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGN---QITI--LDSKTN 114 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTT---EEEE--EETTTC
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccC---ceEE--eecCCc
Confidence 34577899999999999999999998887776 456888888888 99999999999998652 1110 111110
Q ss_pred ccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCC
Q 001321 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGIS 243 (1100)
Q Consensus 164 ~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~ 243 (1100)
..... ....+..+|.+++|+|..++.++++++.||.|++||+.+++.......
T Consensus 115 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------------- 167 (343)
T 3lrv_A 115 KVLRE--IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------------- 167 (343)
T ss_dssp CEEEE--EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-------------------------
T ss_pred ceeEE--eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-------------------------
Confidence 00000 001123789999998854678899999999999999999887554421
Q ss_pred CCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 244 EHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 244 ~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.....|++++|. |+|.+|++|+.||.|++||+.++
T Consensus 168 ---~~~~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 168 ---KSDVEYSSGVLH-KDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp ---CSSCCCCEEEEC-TTSCEEEEECTTSCEEEEESSCT
T ss_pred ---CCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCC
Confidence 004568999986 99999999999999999998755
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=1.4e-20 Score=218.04 Aligned_cols=273 Identities=16% Similarity=0.117 Sum_probs=203.1
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEE-EEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFM-YIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l-~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
..+++++.|+.|++||+.+++.+..+.....+.+++|+|+++++ ++++.++.|++|++.. +++... ++.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~---~~~~---- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT--NNVIAT---VPAG---- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT--TEEEEE---EECS----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC--CeEEEE---EECC----
Confidence 35677788999999999999999988877889999999999987 5666899999998754 454432 3321
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ 246 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~ 246 (1100)
..|.+++|+| ++++++++. .++.|++||+.+++......+
T Consensus 74 ---------~~v~~~~~sp--dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---------------------------- 114 (391)
T 1l0q_A 74 ---------SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---------------------------- 114 (391)
T ss_dssp ---------SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------------------
T ss_pred ---------CCccceEECC--CCCEEEEEECCCCEEEEEECCCCeEEEEEeC----------------------------
Confidence 4799999988 677676555 569999999999988766544
Q ss_pred CCCCceEEEEEecCCCCEE-EEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCC
Q 001321 247 PEEKEISALCWASSSGSIL-AVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNI 325 (1100)
Q Consensus 247 ~~~~~V~sl~w~spdg~~l-~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~ 325 (1100)
...+.+++|. |+|+++ ++++.|+.|++||+.+++. ..
T Consensus 115 --~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~-----------~~---------------------------- 152 (391)
T 1l0q_A 115 --GKSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAV-----------IN---------------------------- 152 (391)
T ss_dssp --SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEE-----------EE----------------------------
T ss_pred --CCCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcE-----------EE----------------------------
Confidence 4568899985 999987 6788899999999864410 00
Q ss_pred CceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeec
Q 001321 326 DGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDN 405 (1100)
Q Consensus 326 ~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~ 405 (1100)
.+... ..+
T Consensus 153 -------------------~~~~~-------------------~~~---------------------------------- 160 (391)
T 1l0q_A 153 -------------------TVSVG-------------------RSP---------------------------------- 160 (391)
T ss_dssp -------------------EEECC-------------------SSE----------------------------------
T ss_pred -------------------EEecC-------------------CCc----------------------------------
Confidence 00000 000
Q ss_pred CceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccc
Q 001321 406 ASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSP 485 (1100)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~ 485 (1100)
T Consensus 161 -------------------------------------------------------------------------------- 160 (391)
T 1l0q_A 161 -------------------------------------------------------------------------------- 160 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccCCCCcEE-EEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEe---cCceEE
Q 001321 486 VPITKCHSVDRVY-LAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGN---EFGLVY 561 (1100)
Q Consensus 486 ~~~~~~s~~~~~l-~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~---~dG~V~ 561 (1100)
..+.++++++.+ ++++.||+|++||+..+.+.. .+ .+...+.+++|+|++++|++++ .++.|+
T Consensus 161 -~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-----------~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 161 -KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID-----------TV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----------EE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred -ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE-----------EE-ecCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 011345566555 788899999999998876441 11 2345789999999999999888 689999
Q ss_pred EEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEE-EEEeCCceEEEEecCCceEEEE
Q 001321 562 IYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKL-AVGFECGRVAVLDMNLLSVLFF 640 (1100)
Q Consensus 562 lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~L-avGs~dG~V~vwD~~~~~~~~~ 640 (1100)
+|++... .++..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..
T Consensus 228 ~~d~~~~-------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 228 MIDTGTN-------------------------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEETTTT-------------------------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCC-------------------------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 9998764 1334444443 57899999999877 5668899999999999988754
Q ss_pred ee
Q 001321 641 TD 642 (1100)
Q Consensus 641 ~~ 642 (1100)
..
T Consensus 282 ~~ 283 (391)
T 1l0q_A 282 MA 283 (391)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=2.7e-21 Score=233.50 Aligned_cols=204 Identities=11% Similarity=0.132 Sum_probs=149.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc--CCCceeeeeecC
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL--ESRSLACCLKWE 117 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~--~s~~~l~~~~~~ 117 (1100)
+.+|+|++.++++++.|+.|.+||....+++........+..++|+|||++|++++.|++|.+||+ .+++.+..+...
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 345999999999999999999999977666544332223889999999999999999999999999 888888888877
Q ss_pred CCeEEEEEec----CCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC-CCCeEEEEeccCCCCC
Q 001321 118 SNITAFSVIS----GSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS-HQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 118 ~~Vt~~~~s~----~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~-~~~V~sv~f~P~~~g~ 191 (1100)
..+..++|+| +++++++++. +++|.||+... ++.... ++.... .......+ ...+.++.++|. .+.
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~~~~~---i~~~g~--~~~~~~~~~~~~v~~i~~s~~-~~~ 293 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQI---VSTRGM--TVDTQTYHPEPRVAAIIASHE-HPE 293 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT--CCEEEE---EECCEE--CSSSCCEESCCCEEEEEECSS-SSE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc--ccccee---ecccCc--ccCccccccCCceEEEEECCC-CCE
Confidence 7899999999 9999999985 89999998653 444432 322110 00000000 137899999884 234
Q ss_pred EEEEEEcCCEEEEEEccCCEEEE--EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 192 RVLIAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
.+++...++.|.+||+.+.+... ...+ ...+..++|. |+|+++++++
T Consensus 294 ~~vs~~~~g~i~vvd~~~~~~l~~~~i~~------------------------------~~~~~~~~~s-pdg~~l~va~ 342 (543)
T 1nir_A 294 FIVNVKETGKVLLVNYKDIDNLTVTSIGA------------------------------APFLHDGGWD-SSHRYFMTAA 342 (543)
T ss_dssp EEEEETTTTEEEEEECTTSSSCEEEEEEC------------------------------CSSCCCEEEC-TTSCEEEEEE
T ss_pred EEEEECCCCeEEEEEecCCCcceeEEecc------------------------------CcCccCceEC-CCCCEEEEEe
Confidence 45666778999999998764322 2222 3345667875 9999877665
Q ss_pred -cCCcEEEEecCCC
Q 001321 270 -IDGDILLWNTSTT 282 (1100)
Q Consensus 270 -~DG~I~lWd~~~~ 282 (1100)
.++.|.+||..++
T Consensus 343 ~~~~~v~v~D~~tg 356 (543)
T 1nir_A 343 NNSNKVAVIDSKDR 356 (543)
T ss_dssp GGGTEEEEEETTTT
T ss_pred cCCCeEEEEECCCC
Confidence 5899999998755
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.89 E-value=7.1e-21 Score=223.78 Aligned_cols=354 Identities=11% Similarity=0.074 Sum_probs=235.2
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCceEEEeCCCCCCEEEEE---EEeCCCEEEEEE--------------C
Q 001321 35 PATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQLPYKNLE---FLQNQGFLISIT--------------N 96 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~~~~~~~h~~~V~~l~---fs~d~~~Lls~s--------------~ 96 (1100)
...|..+.++|....++.... ....+++. ......+..++ |+|++..++.++ .
T Consensus 27 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
T 3bws_A 27 GTEIVKFSIHPYKGTVIRLGEEILPFKVLE---------MDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPE 97 (433)
T ss_dssp CEEEEEEEEECCTTCEEEETTEECCEEEEE---------EETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGG
T ss_pred CcEEEEEecccccCceEEcCceecceeeee---------cccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccC
Confidence 446777888886554443321 11222222 22333455556 666655554433 2
Q ss_pred CC--cEEEEEcCCC--ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeee-ce-eecccccccccC
Q 001321 97 DN--EIQVWSLESR--SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQL-PY-NISADALSEKAG 170 (1100)
Q Consensus 97 d~--~I~vWd~~s~--~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~-~~-~i~~~~~~~~~~ 170 (1100)
++ .|.+||..++ +.+..+.....+.+++|+|++.++++++.++.|++|+.+. ++.... +. .+.+|.
T Consensus 98 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~------ 169 (433)
T 3bws_A 98 ELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKL------ 169 (433)
T ss_dssp GGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTC------
T ss_pred CCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccC------
Confidence 33 3444444445 5566666667788999999777788888899999998764 343321 00 122222
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~ 249 (1100)
..|.+++|+| ++..+++++.++.|++||+.+++....+ .| .
T Consensus 170 ------~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~------------------------------~ 211 (433)
T 3bws_A 170 ------GFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLT------------------------------G 211 (433)
T ss_dssp ------CEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECS------------------------------S
T ss_pred ------CceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCC------------------------------C
Confidence 7899999977 6777888999999999999998765443 34 6
Q ss_pred CceEEEEEecCCCCEEEEE-EcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEecccccCCCCCCce
Q 001321 250 KEISALCWASSSGSILAVG-YIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKESRSNIDGR 328 (1100)
Q Consensus 250 ~~V~sl~w~spdg~~l~sg-~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~~~~~~~~~ 328 (1100)
..+.+++|. |++.+++++ +.||.|++||+.++... .. + .
T Consensus 212 ~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~-----------~~--------------~----------~---- 251 (433)
T 3bws_A 212 KWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEI-----------RK--------------T----------D---- 251 (433)
T ss_dssp SSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEE-----------EE--------------C----------C----
T ss_pred CCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEE-----------EE--------------e----------c----
Confidence 678999986 999988555 47999999998654100 00 0 0
Q ss_pred EEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCeeeEeecCce
Q 001321 329 LFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQLHFYDNASL 408 (1100)
Q Consensus 329 llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l~~~d~~~~ 408 (1100)
....+.
T Consensus 252 --------------------------------------~~~~~~------------------------------------ 257 (433)
T 3bws_A 252 --------------------------------------KIGLPR------------------------------------ 257 (433)
T ss_dssp --------------------------------------CCSEEE------------------------------------
T ss_pred --------------------------------------CCCCce------------------------------------
Confidence 000000
Q ss_pred eEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccccCCcccccCc
Q 001321 409 TTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPLSGGVPSPVPI 488 (1100)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~GG~~~~~~~ 488 (1100)
.
T Consensus 258 -------------------------------------------------------------------------------~ 258 (433)
T 3bws_A 258 -------------------------------------------------------------------------------G 258 (433)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred cccCCCCcEEEEEe--------cCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeE-EEEecCce
Q 001321 489 TKCHSVDRVYLAGY--------HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSL-AVGNEFGL 559 (1100)
Q Consensus 489 ~~~s~~~~~l~Tg~--------~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~L-asg~~dG~ 559 (1100)
++++|+++.+++++ .||.|++||+.++.+... ..|...+.+++|+|+++.| ++++.+|.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT------------IGPPGNKRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE------------EEEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee------------ccCCCCcceEEECCCCCEEEEEecCCCE
Confidence 13445555555554 589999999988764411 1233478899999999755 66688999
Q ss_pred EEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEeC---------------C
Q 001321 560 VYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGFE---------------C 624 (1100)
Q Consensus 560 V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs~---------------d 624 (1100)
|++|++.+.. +...+ .+...+.+++|+|+|++|++++. |
T Consensus 327 v~v~d~~~~~-------------------------~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d 380 (433)
T 3bws_A 327 IEVYDLKEKK-------------------------VQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL 380 (433)
T ss_dssp EEEEETTTTE-------------------------EEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred EEEEECCCCc-------------------------EEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence 9999998641 22222 47788999999999999998876 5
Q ss_pred ceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEe-cceeEEEEeCC
Q 001321 625 GRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISIVGGS 700 (1100)
Q Consensus 625 G~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt-~dg~v~v~d~~ 700 (1100)
|.|++||+.+++++.... +...+.+++|++.+. .|++++ .|+.|.+|+.+
T Consensus 381 g~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~----------------------~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 381 GKVYVIDTTTDTVKEFWE----AGNQPTGLDVSPDNR----------------------YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSC----------------------EEEEEETTTTEEEEEEET
T ss_pred eEEEEEECCCCcEEEEec----CCCCCceEEEcCCCC----------------------EEEEEECCCCeEEEEEec
Confidence 799999999988874433 255789999985543 366665 59999999943
No 127
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.3e-22 Score=227.71 Aligned_cols=188 Identities=11% Similarity=0.092 Sum_probs=146.8
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC---------CCcee
Q 001321 41 LAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE---------SRSLA 111 (1100)
Q Consensus 41 la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~---------s~~~l 111 (1100)
..+.+++.+||+|+.||.|+||+....+.+.... ..+|..+.|+|+ +++++.|++|++|+.. +++.+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 3445688999999999999999996554443322 567888889988 9999999999999665 55545
Q ss_pred eee--ecCCCeEEEEEec--CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 112 CCL--KWESNITAFSVIS--GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 112 ~~~--~~~~~Vt~~~~s~--~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
..+ .+.+.|++++++| +++++++|+.||+|++|++... +.... ...+. ...|.+++|+|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~---~~~~~-----------~~~i~~~~~~p- 180 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD--SQYIV---HSAKS-----------DVEYSSGVLHK- 180 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS--CEEEE---ECCCS-----------SCCCCEEEECT-
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC--cEEEE---EecCC-----------CCceEEEEECC-
Confidence 444 4557899999999 9999999999999999998753 33211 21111 15799999988
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEE--EEec-CCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQII--FVGG-GKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~--~~~~-~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
++.++++|+.||.|++||+.+++.. .+.+ | ...|++++|. |+|.+
T Consensus 181 -dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h------------------------------~~~v~~l~fs-~~g~~ 228 (343)
T 3lrv_A 181 -DSLLLALYSPDGILDVYNLSSPDQASSRFPVDE------------------------------EAKIKEVKFA-DNGYW 228 (343)
T ss_dssp -TSCEEEEECTTSCEEEEESSCTTSCCEECCCCT------------------------------TSCEEEEEEC-TTSSE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCCCCccEEeccC------------------------------CCCEEEEEEe-CCCCE
Confidence 7888999999999999999988654 2332 4 7889999985 99999
Q ss_pred EEEEEcCCcEEEEecCCC
Q 001321 265 LAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1100)
|++++ |+.|++||+.+.
T Consensus 229 l~s~~-~~~v~iwd~~~~ 245 (343)
T 3lrv_A 229 MVVEC-DQTVVCFDLRKD 245 (343)
T ss_dssp EEEEE-SSBEEEEETTSS
T ss_pred EEEEe-CCeEEEEEcCCC
Confidence 99999 559999998754
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.88 E-value=1.5e-20 Score=206.35 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=74.1
Q ss_pred EEEEEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceee
Q 001321 497 VYLAGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLF 576 (1100)
Q Consensus 497 ~l~Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~ 576 (1100)
.+++|+.|++|++||..++.+...+.+. . ..+|...+.+. +.++.++|+|+.||+|+|||+.++
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~-----~-p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tG-------- 315 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYC-----L-PPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLG-------- 315 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEEC-----C-CTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTC--------
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEee-----c-cCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCC--------
Confidence 5789999999999999988754221111 0 24665555444 444889999999999999999886
Q ss_pred eccCCCceeeccCCCcceeEEEEeecCcCeE-EEEEcCCCCEEEEEeCCceEEEEec
Q 001321 577 VLETKSEVHALPEGKISLCRAVFSLVNSPVR-ALQFTSSGAKLAVGFECGRVAVLDM 632 (1100)
Q Consensus 577 ~~~~~~~~~~i~~~~~~~~~~~~~~h~~~Vt-sLafSp~g~~LavGs~dG~V~vwD~ 632 (1100)
+++..+.+|...|. +++|||||++||+|+.|++|+|||+
T Consensus 316 -----------------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 -----------------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----------------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----------------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 35677888887655 6999999999999999999999996
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=6.8e-20 Score=221.16 Aligned_cols=353 Identities=9% Similarity=0.055 Sum_probs=241.0
Q ss_pred EEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecc
Q 001321 83 EFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA 162 (1100)
Q Consensus 83 ~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~ 162 (1100)
.|+|++.++++.+.+++|.+||..+++++..+.....+.+++|+|+++++++++.++.|++|+++..+++... .++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~---~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA---EIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE---EEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE---EEec
Confidence 3889988888888899999999999999988864445999999999999999999999999998423344442 2442
Q ss_pred cccccccCCCCCCCCCeEEEEecc--CCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccc
Q 001321 163 DALSEKAGFPLLSHQPVVGVLPHP--NSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1100)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sv~f~P--~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g 239 (1100)
. ..+.+++|+| ..+|++++++. .++.|.+||..+.+++......+... .+
T Consensus 221 g-------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~--------------~~ 273 (543)
T 1nir_A 221 G-------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV--------------DT 273 (543)
T ss_dssp C-------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS--------------SS
T ss_pred C-------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc--------------Cc
Confidence 1 4579999977 11577777776 58999999999988766542100000 00
Q ss_pred cCCCCCCCCCCceEEEEEecCCCC-EEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEeccc
Q 001321 240 EGISEHQPEEKEISALCWASSSGS-ILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTN 318 (1100)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~ 318 (1100)
..+. ....+.++++. |++. ++++...+|.|.+||..+.... + +..+
T Consensus 274 ~~~~----~~~~v~~i~~s-~~~~~~~vs~~~~g~i~vvd~~~~~~l------------~-----------~~~i----- 320 (543)
T 1nir_A 274 QTYH----PEPRVAAIIAS-HEHPEFIVNVKETGKVLLVNYKDIDNL------------T-----------VTSI----- 320 (543)
T ss_dssp CCEE----SCCCEEEEEEC-SSSSEEEEEETTTTEEEEEECTTSSSC------------E-----------EEEE-----
T ss_pred cccc----cCCceEEEEEC-CCCCEEEEEECCCCeEEEEEecCCCcc------------e-----------eEEe-----
Confidence 0000 03368888875 7655 5667778999999998643100 0 0000
Q ss_pred ccCCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCC
Q 001321 319 KESRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPG 398 (1100)
Q Consensus 319 ~~~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G 398 (1100)
.. +
T Consensus 321 ----------------------------~~-------------------------------------------------~ 323 (543)
T 1nir_A 321 ----------------------------GA-------------------------------------------------A 323 (543)
T ss_dssp ----------------------------EC-------------------------------------------------C
T ss_pred ----------------------------cc-------------------------------------------------C
Confidence 00 0
Q ss_pred eeeEeecCceeEeeeccCCCCCCCCccCCcccccCCCceEEEEEEeccCCCCchhhHhHHHhhccccCCCcccCcccccc
Q 001321 399 QLHFYDNASLTTLLSQQEKKPSVCPVEFPGVIPISDPIMTVAEFMLLPFGGHSSKGLSEIATFTKLHSSHTQAGHIKWPL 478 (1100)
Q Consensus 399 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 478 (1100)
T Consensus 324 -------------------------------------------------------------------------------- 323 (543)
T 1nir_A 324 -------------------------------------------------------------------------------- 323 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccCccccCCCCcEEE-EEecCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeC-CCeEEEEe-
Q 001321 479 SGGVPSPVPITKCHSVDRVYL-AGYHDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFI-NSSLAVGN- 555 (1100)
Q Consensus 479 ~GG~~~~~~~~~~s~~~~~l~-Tg~~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd-~~~Lasg~- 555 (1100)
. ....++++|++++++ ++..+++|++||..++.+..... +....|......+ ++|+ +..++++.
T Consensus 324 --~---~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~-------~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 324 --P---FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD-------VGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp --S---SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE-------CSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred --c---CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec-------cCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 0 000115778888655 55678999999999887652211 1011354444333 5777 56667765
Q ss_pred cCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe-------CCceEE
Q 001321 556 EFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-------ECGRVA 628 (1100)
Q Consensus 556 ~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs-------~dG~V~ 628 (1100)
.|++|.||+....... ...++++..+..|.+.+..++|+|+|++|++++ .+++|.
T Consensus 391 ~d~~V~v~d~~~~~~~------------------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 391 GDGSISLIGTDPKNHP------------------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp SSSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred CCceEEEEEeCCCCCc------------------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 5899999999873210 112346788888988999999999999999997 277999
Q ss_pred EEecCCceEEEEee-c-----CCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEE-----ecceeEEEE
Q 001321 629 VLDMNLLSVLFFTD-D-----ISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVL-----FKDAKISIV 697 (1100)
Q Consensus 629 vwD~~~~~~~~~~~-~-----~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g-----t~dg~v~v~ 697 (1100)
|||+.+.++.+..- + +..+...|..++|++.+.. |+++ +.++.|.||
T Consensus 453 v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~----------------------~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 453 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE----------------------VWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp EEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSE----------------------EEEEEECCTTSCCEEEEE
T ss_pred EEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCE----------------------EEEEeecCCCCCCeEEEE
Confidence 99999887664331 1 1346788999999977755 4443 358999999
Q ss_pred eCCCCccccCC
Q 001321 698 GGSSENMISSS 708 (1100)
Q Consensus 698 d~~~g~~l~~~ 708 (1100)
|..|++++..-
T Consensus 511 D~~t~~~~~~i 521 (543)
T 1nir_A 511 DDKTLKLKAVV 521 (543)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCceEEEee
Confidence 99998877553
No 130
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=1.4e-19 Score=228.66 Aligned_cols=224 Identities=13% Similarity=0.066 Sum_probs=154.8
Q ss_pred cccccceeeeecCC--CCCeEEEEEcCCCCEEEEEEC-CC-----eEEEEeCCCceEE-EeCCCC---------------
Q 001321 21 AADLNLRIAVHYGI--PATASILAFDHIQRLLAIATL-DG-----RIKVIGGDGIEGL-LISPSQ--------------- 76 (1100)
Q Consensus 21 ~~~~~~~~~~~~G~--~~~v~~la~sp~~~lLA~gs~-dG-----~I~vw~~~~~~~~-~~~~h~--------------- 76 (1100)
.+.+.++...+.|. ...+.+++|+|||++||+++. || .|++|+..+.+.. +...+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (741)
T 2ecf_A 20 AEKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKAR 99 (741)
T ss_dssp --CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-------------
T ss_pred cccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhh
Confidence 44566666665443 557999999999999999998 88 9999999765544 333322
Q ss_pred ---------CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC---ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 001321 77 ---------LPYKNLEFLQNQGFLISITNDNEIQVWSLESR---SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVI 144 (1100)
Q Consensus 77 ---------~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~---~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw 144 (1100)
..|..++|+|||++|++++. +.|.+||+.++ +......+...+.+++|+|++++++.++. +.|++|
T Consensus 100 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~ 177 (741)
T 2ecf_A 100 RERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVI 177 (741)
T ss_dssp -------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEE
T ss_pred hhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEE
Confidence 23889999999999999886 99999999998 66665567788999999999999999875 568777
Q ss_pred EEecCCCeeeeeceeecccccccccCCC----CCCCCCeEEEEeccCCCCCEEEEEEcCC--------------------
Q 001321 145 KYDADEGKLFQLPYNISADALSEKAGFP----LLSHQPVVGVLPHPNSSGNRVLIAYENA-------------------- 200 (1100)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~----~~~~~~V~sv~f~P~~~g~~ll~~~~dg-------------------- 200 (1100)
+++. +...+. ...+...-..+.+ ......+.++.|+| +|++|++++.++
T Consensus 178 d~~~--g~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 178 DLAS--GRQMQL---TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp ETTT--TEEEEC---CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred ecCC--CCEEEe---ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 7653 444431 1111100000000 00012357899988 788888887765
Q ss_pred -------------EEEEEEccC-CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 201 -------------LVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 201 -------------~V~lwdl~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
.|.+||+.+ ++....... ..+...+.+++| |||++|+
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~--pDg~~l~ 301 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---------------------------KEQDIYLARVNW--RDPQHLS 301 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCC---------------------------SCSSEEEEEEEE--EETTEEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCC---------------------------CCcceEEEEEEe--CCCCEEE
Confidence 778888887 765443210 001567889998 8999999
Q ss_pred EEEc-----CCcEEEEecCCC
Q 001321 267 VGYI-----DGDILLWNTSTT 282 (1100)
Q Consensus 267 sg~~-----DG~I~lWd~~~~ 282 (1100)
+++. ++.|.+||+.++
T Consensus 302 ~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 302 FQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEEEETTSSEEEEEEEETTTC
T ss_pred EEEecccCCeEEEEEEECCCC
Confidence 8765 456888887644
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.84 E-value=6e-19 Score=206.23 Aligned_cols=195 Identities=10% Similarity=0.069 Sum_probs=145.9
Q ss_pred CCeEEEEEcCCCC-EEEEEE----CCC----eEEEEeC--CCceEE---EeCCCCCCEEEEEEEe--------------C
Q 001321 36 ATASILAFDHIQR-LLAIAT----LDG----RIKVIGG--DGIEGL---LISPSQLPYKNLEFLQ--------------N 87 (1100)
Q Consensus 36 ~~v~~la~sp~~~-lLA~gs----~dG----~I~vw~~--~~~~~~---~~~~h~~~V~~l~fs~--------------d 87 (1100)
..+...+|++.+. ++++|+ .|| .|+|||. ...+.+ ....|...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677788888774 677887 468 9999999 655443 3456777777777764 1
Q ss_pred CCEEEEEECC------CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCC---cEEEEEEecCCCeeeeece
Q 001321 88 QGFLISITND------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPY 158 (1100)
Q Consensus 88 ~~~Lls~s~d------~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG---~V~Iw~~d~~~~~l~~~~~ 158 (1100)
+.+++.++.+ ++|.+||+..+.......+...|.+++|+|+++++++++.++ .|++|+++. ++...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t--g~~~~--- 217 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQ--- 217 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC--CcEEE---
Confidence 5677777764 799999999777666667889999999999999999998774 888888764 33332
Q ss_pred eecccccccccCCCCCCCCCeEEEEeccCCCCCEEE-EEEcCC--EEEEEEccCCEEEEEecCCcccccccccCCCCCCC
Q 001321 159 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL-IAYENA--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1100)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll-~~~~dg--~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 235 (1100)
+..+. ..+.+++|+| +|++|+ +++.++ .|.+||+.+++...+..|
T Consensus 218 -l~~~~------------~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~----------------- 265 (415)
T 2hqs_A 218 -VASFP------------RHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG----------------- 265 (415)
T ss_dssp -EECCS------------SCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCEEECCCC-----------------
T ss_pred -eecCC------------CcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCEEeCcCC-----------------
Confidence 33333 6799999988 788777 555555 589999999887665555
Q ss_pred CccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc-CC--cEEEEecCC
Q 001321 236 STFLEGISEHQPEEKEISALCWASSSGSILAVGYI-DG--DILLWNTST 281 (1100)
Q Consensus 236 ~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~-DG--~I~lWd~~~ 281 (1100)
...+.+++|. |||++|++++. +| .|.+||+.+
T Consensus 266 -------------~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~ 300 (415)
T 2hqs_A 266 -------------RSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNING 300 (415)
T ss_dssp -------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTS
T ss_pred -------------CCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCC
Confidence 6678899985 99999998886 45 566667654
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=1.6e-19 Score=198.30 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=141.6
Q ss_pred CCeEEEEEcCC----CCEEEEEEC--------------------CCeEEEEeC-C-CceEEEeCCCCCCEEEEEEEe---
Q 001321 36 ATASILAFDHI----QRLLAIATL--------------------DGRIKVIGG-D-GIEGLLISPSQLPYKNLEFLQ--- 86 (1100)
Q Consensus 36 ~~v~~la~sp~----~~lLA~gs~--------------------dG~I~vw~~-~-~~~~~~~~~h~~~V~~l~fs~--- 86 (1100)
..|.+++|+|+ +++++.++. |+.|++|++ + +........|...++.++|++
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 36788888888 888887664 788888888 3 333344567888888888888
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeee-cC---CCeEEEEEecCCCEE------------EEEeCCCcEEEEEEecCC
Q 001321 87 NQGFLISITNDNEIQVWSLESRSLACCLK-WE---SNITAFSVISGSHFM------------YIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 87 d~~~Lls~s~d~~I~vWd~~s~~~l~~~~-~~---~~Vt~~~~s~~~~~l------------~~G~~dG~V~Iw~~d~~~ 150 (1100)
++.+|++++.|++|+|||+.+++.+.++. +. ..+.+++|+|++.++ ++|+.|++|++|+.+.
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-- 269 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-- 269 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT--
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC--
Confidence 77899999999999999999999988884 32 468888999999876 5677899999997653
Q ss_pred Ceeeee-ceeec-ccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe-cCCcccccccc
Q 001321 151 GKLFQL-PYNIS-ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG-GGKDLQLKDGV 227 (1100)
Q Consensus 151 ~~l~~~-~~~i~-~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~-~~~~~~~~~~l 227 (1100)
++.... .+.++ +|. ..+.+..+ .+..+++++.|++|+|||+.+++++..+ +|
T Consensus 270 gk~l~v~~~~~p~Gh~------------~~~lsg~~----sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH--------- 324 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQA------------GRFLEGDV----KDHCAAAILTSGTIAIWDLLLGQCTALLPPV--------- 324 (356)
T ss_dssp TEEEEEEEECCCTTCC------------CCEEEEEE----ETTEEEEEETTSCEEEEETTTCSEEEEECCC---------
T ss_pred CEEEEEEEeeccCCCc------------ceeEcccc----CCCEEEEEcCCCcEEEEECCCCcEEEEecCC---------
Confidence 444321 01112 222 44544444 3667899999999999999999876654 45
Q ss_pred cCCCCCCCCccccCCCCCCCCCCc-eEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 228 VDSPSEGDSTFLEGISEHQPEEKE-ISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 228 ~~~~~g~~~~~g~~~~~~~~~~~~-V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
... +.+++|. |||++|++|+.|++|++||+
T Consensus 325 ---------------------~~~vvs~vafS-PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 ---------------------SDQHWSFVKWS-GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----------------------CCCCEEEEC-SSSSEEEEECTTSCEEEEEE
T ss_pred ---------------------CCCeEEEEEEC-CCCCEEEEEECCCcEEEecC
Confidence 333 4468885 99999999999999999986
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=2.2e-18 Score=216.21 Aligned_cols=205 Identities=11% Similarity=0.133 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceE--EEeCCCC-----------------CCEEEEEEEeCCCEEEEEECCC
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLISPSQ-----------------LPYKNLEFLQNQGFLISITNDN 98 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~--~~~~~h~-----------------~~V~~l~fs~d~~~Lls~s~d~ 98 (1100)
+..+.|. +..+++++.|| | +||....+. ..+..|. .+|.+++|+|| ++++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4447777 66777888888 8 999855443 3333322 57999999999 6666654 69
Q ss_pred cEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC---CeeeeeceeecccccccccCC--CC
Q 001321 99 EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE---GKLFQLPYNISADALSEKAGF--PL 173 (1100)
Q Consensus 99 ~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~---~~l~~~~~~i~~~~~~~~~~~--~~ 173 (1100)
.|.+||+.+++......+...+.+++|+|++++++++ .++.|++|+++... +...+. .......-..+. .+
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~---~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV---TIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES---CSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe---ccCCCCCeEcccchhh
Confidence 9999999999887777777889999999999999985 67889999887510 222211 111110000000 01
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEE---------------------------------cCCEEEEEEccCCEEEEEecCCc
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAY---------------------------------ENALVILWDVSEAQIIFVGGGKD 220 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~---------------------------------~dg~V~lwdl~~~~~~~~~~~~~ 220 (1100)
.....+.++.|+| +|++|++++ .+..|.+||+.+++.......
T Consensus 178 ee~~~~~~~~~Sp--Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~-- 253 (706)
T 2z3z_A 178 REFGIEKGTFWSP--KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG-- 253 (706)
T ss_dssp GCTTCCCSEEECT--TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC--
T ss_pred hhcCCCceEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC--
Confidence 1123468899988 798888887 446899999999876543210
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC-----cEEEEecCCC
Q 001321 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-----DILLWNTSTT 282 (1100)
Q Consensus 221 ~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG-----~I~lWd~~~~ 282 (1100)
. .+...+.+++|. |||++|++++.++ .|.+||+.++
T Consensus 254 -----~--------------------~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 254 -----E--------------------PKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp -----S--------------------CTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred -----C--------------------CCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 0 015678899995 9999999988776 8888987644
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=3.4e-18 Score=215.12 Aligned_cols=225 Identities=9% Similarity=0.018 Sum_probs=147.5
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE-EEeCCCCC---CEEEEEEEeCCCEEEEEECC--
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG-LLISPSQL---PYKNLEFLQNQGFLISITND-- 97 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~-~~~~~h~~---~V~~l~fs~d~~~Lls~s~d-- 97 (1100)
|.++.+........+.+++|+|+++++++ +.||.|++|+....+. .+...|.. .|..++|+|||.+|++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 5 VTVEDLFSEDFKIHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCHHHHTCTTTCCCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccHHHHhCCCCcccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCcc
Confidence 44555555555567888999999998877 6899999999955443 34445554 49999999999999999874
Q ss_pred -------CcEEEEEcCCCceeeeee---cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 98 -------NEIQVWSLESRSLACCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 98 -------~~I~vWd~~s~~~l~~~~---~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
+.|.+||+.+++...... +...+.+++|+|++++|+.++. +.|++|+.+. +...+. ...+...-
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~--g~~~~~---~~~~~~~~ 157 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG--KQAIRV---VSTGKEGV 157 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS--SCCEEE---ECCCBTTT
T ss_pred ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC--CceEEE---ecCCCCCc
Confidence 678899999987632222 2334899999999999999886 6787777654 333321 11111000
Q ss_pred -ccCCC-----CCCCCCeEEEEeccCCCCCEEEEEEcCC----------------------------------EEEEEEc
Q 001321 168 -KAGFP-----LLSHQPVVGVLPHPNSSGNRVLIAYENA----------------------------------LVILWDV 207 (1100)
Q Consensus 168 -~~~~~-----~~~~~~V~sv~f~P~~~g~~ll~~~~dg----------------------------------~V~lwdl 207 (1100)
..+.+ ..-...+.+++|+| +|++|++++.++ .|.+||+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred eECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 00000 00012458999988 788888887553 6777777
Q ss_pred cCCEE-EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC----CcEEEEecCCC
Q 001321 208 SEAQI-IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID----GDILLWNTSTT 282 (1100)
Q Consensus 208 ~~~~~-~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D----G~I~lWd~~~~ 282 (1100)
.+++. ..+..+... ......+.+++|. |||+++++...+ +.|.+||+.++
T Consensus 236 ~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 236 NGPTHDLEMMPPDDP------------------------RMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp SSSCCCEECCCCCCG------------------------GGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred CCCceeEEeeCCccC------------------------CCccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 76653 222111000 0014568889985 999988776543 46888887644
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.80 E-value=1.7e-17 Score=209.47 Aligned_cols=169 Identities=9% Similarity=0.083 Sum_probs=114.4
Q ss_pred CCCEEEEEEEeCCCEEEEEEC-CC-----cEEEEEcCCCceeeeeecC-------------------------CCeEEEE
Q 001321 76 QLPYKNLEFLQNQGFLISITN-DN-----EIQVWSLESRSLACCLKWE-------------------------SNITAFS 124 (1100)
Q Consensus 76 ~~~V~~l~fs~d~~~Lls~s~-d~-----~I~vWd~~s~~~l~~~~~~-------------------------~~Vt~~~ 124 (1100)
...|..++|+|||.+|++++. |+ +|.+||+.+++........ ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 87 8999999999876655332 2378999
Q ss_pred EecCCCEEEEEeCCCcEEEEEEecCCC-eeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEE
Q 001321 125 VISGSHFMYIGDENGLMSVIKYDADEG-KLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1100)
Q Consensus 125 ~s~~~~~l~~G~~dG~V~Iw~~d~~~~-~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~ 203 (1100)
|+|++++|++++. +.|++|+++.... .... +..+. ..+.+++|+| +|++|+.++ ++.|.
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----l~~~~------------~~~~~~~~SP--DG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----LTHGE------------GFATDAKLSP--KGGFVSFIR-GRNLW 175 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB----CCCSS------------SCEEEEEECT--TSSEEEEEE-TTEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE----cccCC------------cccccccCCC--CCCEEEEEe-CCcEE
Confidence 9999999999987 8888888764200 2221 33333 6799999988 798787776 56899
Q ss_pred EEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC-cEEEEe
Q 001321 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG-DILLWN 278 (1100)
Q Consensus 204 lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG-~I~lWd 278 (1100)
+||+.+++...........+. .|..--....+...+.+++|. |||++|++++.|+ .+..|+
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~-------------~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~ 237 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIG-------------NGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQK 237 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEE-------------ESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEE
T ss_pred EEecCCCCEEEeccCCcccee-------------ccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEe
Confidence 999999887654322000000 000000000001235778885 9999999987664 344444
No 136
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.79 E-value=2.5e-17 Score=192.45 Aligned_cols=187 Identities=11% Similarity=0.093 Sum_probs=146.7
Q ss_pred CCEEEEEECC------CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC---cEEEEEcCCCceeeeeecC
Q 001321 47 QRLLAIATLD------GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN---EIQVWSLESRSLACCLKWE 117 (1100)
Q Consensus 47 ~~lLA~gs~d------G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~---~I~vWd~~s~~~l~~~~~~ 117 (1100)
+..+|.++.+ +.|++||.++.....+..|...|.+++|+|||.+|++++.++ .|.+||+.+++......+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~ 222 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 222 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC
Confidence 5666666654 799999998877777778999999999999999999999875 8999999999887766788
Q ss_pred CCeEEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEE
Q 001321 118 SNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIA 196 (1100)
Q Consensus 118 ~~Vt~~~~s~~~~~l~-~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~ 196 (1100)
+.+.+++|+|++++|+ +++.+|...||.++...++... +..+. ..+.+++|+| +|++|+++
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~----l~~~~------------~~~~~~~~sp--dg~~l~~~ 284 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGR------------SNNTEPTWFP--DSQNLAFT 284 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----CCCCS------------SCEEEEEECT--TSSEEEEE
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe----CcCCC------------CcccceEECC--CCCEEEEE
Confidence 8999999999999888 6677776455555554455432 44443 6799999988 78888888
Q ss_pred EcC-C--EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC--
Q 001321 197 YEN-A--LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-- 271 (1100)
Q Consensus 197 ~~d-g--~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D-- 271 (1100)
+.+ + .|.+||+.+++......+ ...+.+++|. |+|++|++++.+
T Consensus 285 s~~~g~~~i~~~d~~~~~~~~l~~~------------------------------~~~~~~~~~s-pdG~~l~~~~~~~g 333 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAPQRITWE------------------------------GSQNQDADVS-SDGKFMVMVSSNGG 333 (415)
T ss_dssp ECTTSSCEEEEEETTSSCCEECCCS------------------------------SSEEEEEEEC-TTSSEEEEEEECSS
T ss_pred ECCCCCcEEEEEECCCCCEEEEecC------------------------------CCcccCeEEC-CCCCEEEEEECcCC
Confidence 864 4 678889888775443333 5568889985 999999988875
Q ss_pred -CcEEEEecCCC
Q 001321 272 -GDILLWNTSTT 282 (1100)
Q Consensus 272 -G~I~lWd~~~~ 282 (1100)
+.|.+||+.++
T Consensus 334 ~~~i~~~d~~~~ 345 (415)
T 2hqs_A 334 QQHIAKQDLATG 345 (415)
T ss_dssp CEEEEEEETTTC
T ss_pred ceEEEEEECCCC
Confidence 57999988644
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=1.7e-16 Score=179.39 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=106.1
Q ss_pred CEEEEE-ECCCcEEEEEcC-CC--ceeeeeecCCCeEEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeeeceeeccc
Q 001321 89 GFLISI-TNDNEIQVWSLE-SR--SLACCLKWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISAD 163 (1100)
Q Consensus 89 ~~Lls~-s~d~~I~vWd~~-s~--~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d-G~V~Iw~~d~~~~~l~~~~~~i~~~ 163 (1100)
.+|+.+ +.++.|.+||+. ++ +.+....+...+.+++|+|+++++++++.+ +.|++|+++...+.+... ..++.+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec-cccccC
Confidence 344444 679999999995 34 445556777889999999999999998886 999999998655554431 112211
Q ss_pred ccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEccCC---EEEEEecCCcccccccccCCCCCCCCccc
Q 001321 164 ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEA---QIIFVGGGKDLQLKDGVVDSPSEGDSTFL 239 (1100)
Q Consensus 164 ~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~~---~~~~~~~~~~~~~~~~l~~~~~g~~~~~g 239 (1100)
..+.+++|+| ++++++++.. ++.|.+||+..+ +.......
T Consensus 84 -------------~~~~~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------- 127 (343)
T 1ri6_A 84 -------------GSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--------------------- 127 (343)
T ss_dssp -------------SCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---------------------
T ss_pred -------------CCCcEEEEcC--CCCEEEEEecCCCeEEEEECCCCccccccccccC---------------------
Confidence 4678999988 6877776665 889999999533 33333222
Q ss_pred cCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEecCC
Q 001321 240 EGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1100)
Q Consensus 240 ~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~~~ 281 (1100)
...+.+++|. |+|+++++++ .++.|.+||+.+
T Consensus 128 ---------~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 128 ---------LDGCHSANIS-PDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp ---------CTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECT
T ss_pred ---------CCCceEEEEC-CCCCEEEEecCCCCEEEEEEecC
Confidence 3447778885 9999888887 899999999864
No 138
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=1.8e-16 Score=179.23 Aligned_cols=188 Identities=10% Similarity=0.149 Sum_probs=135.0
Q ss_pred EEEEEECCCeEEEEeCC---CceEEEeCCCCCCEEEEEEEeCCCEEEEEECC-CcEEEEEcC--CCc--eeeeeecCCCe
Q 001321 49 LLAIATLDGRIKVIGGD---GIEGLLISPSQLPYKNLEFLQNQGFLISITND-NEIQVWSLE--SRS--LACCLKWESNI 120 (1100)
Q Consensus 49 lLA~gs~dG~I~vw~~~---~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d-~~I~vWd~~--s~~--~l~~~~~~~~V 120 (1100)
++++++.|+.|++|+.+ ..+.+....|...+..++|+|++.+|++++.+ +.|.+|++. +++ .+..+...+.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 34444679999999985 22444556788889999999999999999886 899999998 555 34445545689
Q ss_pred EEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE-c
Q 001321 121 TAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-E 198 (1100)
Q Consensus 121 t~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~ 198 (1100)
.+++|+|+++++++++. ++.|.+|+++ .+........+..+ ..+.+++|+| ++++++++. .
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~-------------~~~~~~~~s~--dg~~l~~~~~~ 149 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLE--DGLPVGVVDVVEGL-------------DGCHSANISP--DNRTLWVPALK 149 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEE--TTEEEEEEEEECCC-------------TTBCCCEECT--TSSEEEEEEGG
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECC--CCccccccccccCC-------------CCceEEEECC--CCCEEEEecCC
Confidence 99999999998887765 8889999996 22222111122211 4578899988 687788877 8
Q ss_pred CCEEEEEEccC-CEEEEEe--cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcE
Q 001321 199 NALVILWDVSE-AQIIFVG--GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDI 274 (1100)
Q Consensus 199 dg~V~lwdl~~-~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I 274 (1100)
++.|.+||+.+ +++.... .. ... ....+.+++|. |+|+++++++ .++.|
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~-------~~~-------------------~~~~~~~~~~~-pdg~~l~~~~~~~~~i 202 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEV-------TTV-------------------EGAGPRHMVFH-PNEQYAYCVNELNSSV 202 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEE-------ECS-------------------TTCCEEEEEEC-TTSSEEEEEETTTTEE
T ss_pred CCEEEEEEecCCCceeeeccccc-------ccC-------------------CCCCcceEEEC-CCCCEEEEEeCCCCEE
Confidence 99999999987 6553221 00 000 03456788985 9999776655 78999
Q ss_pred EEEecC
Q 001321 275 LLWNTS 280 (1100)
Q Consensus 275 ~lWd~~ 280 (1100)
.+|++.
T Consensus 203 ~~~~~~ 208 (343)
T 1ri6_A 203 DVWELK 208 (343)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 999985
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.76 E-value=1.7e-16 Score=178.80 Aligned_cols=147 Identities=5% Similarity=-0.031 Sum_probs=111.4
Q ss_pred CEEEEEECCCeEEEEeCCCceEEEeCCCCC---CEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceeeeeecCC-----
Q 001321 48 RLLAIATLDGRIKVIGGDGIEGLLISPSQL---PYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWES----- 118 (1100)
Q Consensus 48 ~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~---~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~~~~~~~----- 118 (1100)
++|++++.++.|++||....+.+....... .+..++|+|++.+++.++ .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999997766654443333 588999999998775554 57899999999999887765443
Q ss_pred -CeEEEEEecCCCEEEEEe------------CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 119 -NITAFSVISGSHFMYIGD------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 119 -~Vt~~~~s~~~~~l~~G~------------~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
.+.+++++|++++++++. .++.|.+|+.+ +++.... ++. . ..+.+++|+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~---~~~-~------------~~~~~~~~s 143 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE--TLSRRKA---FEA-P------------RQITMLAWA 143 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT--TTEEEEE---EEC-C------------SSCCCEEEC
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC--CCcEEEE---EeC-C------------CCcceeEEC
Confidence 688999999999999986 57888888765 3444422 321 1 446788898
Q ss_pred cCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 186 PNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
| +|++++++ ++.|.+||+.++++....
T Consensus 144 ~--dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 144 R--DGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp T--TSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred C--CCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 7 67767777 688999999998876544
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.75 E-value=1.2e-16 Score=175.87 Aligned_cols=176 Identities=10% Similarity=0.116 Sum_probs=136.3
Q ss_pred EECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC-Cceeeeeec--CCCeEEEEEecCC
Q 001321 53 ATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES-RSLACCLKW--ESNITAFSVISGS 129 (1100)
Q Consensus 53 gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s-~~~l~~~~~--~~~Vt~~~~s~~~ 129 (1100)
++.|+.|++|+....+......|...|.+++|+|++.+|++++ ++.|.+||+.+ ++....... ...|.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4567999999998888777778999999999999999999876 88999999999 877665533 3678999999999
Q ss_pred CEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE-EEEcCCEEEEEE
Q 001321 130 HFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL-IAYENALVILWD 206 (1100)
Q Consensus 130 ~~l~~G~--~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll-~~~~dg~V~lwd 206 (1100)
++++++. .++.+.||.++...+.... +..+ ..+..++|+| ++++++ ++..++.+.||+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~-------------~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRL----MTKN-------------LPSYWHGWSP--DGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEE----CCSS-------------SSEEEEEECT--TSSEEEEEEEETTEEEEEE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEE----eecC-------------CCccceEECC--CCCEEEEEECCCCceEEEE
Confidence 9999998 4567889999876555432 2221 3488899988 677676 778899999999
Q ss_pred cc--CCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEec
Q 001321 207 VS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNT 279 (1100)
Q Consensus 207 l~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~ 279 (1100)
+. ++.......+ ...+.+++|. |+|.+|+.++ .++.+.+|++
T Consensus 158 ~~~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 158 MDIDSGVETRLTHG------------------------------EGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp EETTTCCEEECCCS------------------------------SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEE
T ss_pred EECCCCcceEcccC------------------------------CCccccceEC-CCCCEEEEEecCCCCccEEEE
Confidence 64 3444433333 5678888985 9998877766 4777888865
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.75 E-value=3.2e-16 Score=196.55 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=109.1
Q ss_pred cccCCCCcEEEEEecCC-----cEEEeeCCCC-ceeEEeeeccceeeeeecCCCCCeeEEEEee--CCCeEEEEecCceE
Q 001321 489 TKCHSVDRVYLAGYHDG-----SVRIWDATYP-VFKLICALDAEVQGIEVAGSRAPVSTLSFCF--INSSLAVGNEFGLV 560 (1100)
Q Consensus 489 ~~~s~~~~~l~Tg~~DG-----tIriWd~~~~-~l~~~~~l~~~~~~~~l~~h~~~Vt~lafsp--d~~~Lasg~~dG~V 560 (1100)
+.++||++.|++++.|+ .|++||+.++ .+..+.... .......+.+++|+| |+++|++++.+|.+
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-------~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-------DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-------CSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-------CCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 36889999888887776 8999999988 443221110 011112357789999 99999999999999
Q ss_pred EEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEE-EEEcCCCCEEEEEe-CCc----eEEEEecCC
Q 001321 561 YIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRA-LQFTSSGAKLAVGF-ECG----RVAVLDMNL 634 (1100)
Q Consensus 561 ~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~Vts-LafSp~g~~LavGs-~dG----~V~vwD~~~ 634 (1100)
+||.++.... ....+..+...|.+ ++|+|+|+.|++++ .++ .|+.||+.+
T Consensus 336 ~l~~~~~~~~------------------------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 336 HLYLYDTTGR------------------------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp EEEEEETTSC------------------------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred EEEEEECCCC------------------------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 9999873211 23445667778887 89999998876654 444 788888887
Q ss_pred ceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecc---eeEEEEeCCCCc
Q 001321 635 LSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD---AKISIVGGSSEN 703 (1100)
Q Consensus 635 ~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~d---g~v~v~d~~~g~ 703 (1100)
+... .+ .+...+.+++|++++. .++++++.+ +.|.+||..+|+
T Consensus 392 ~~~~----~l-~~~~~~~~~~~spdg~---------------------~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 392 GKTK----DL-TPESGMHRTQLSPDGS---------------------AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCCE----ES-CCSSSEEEEEECTTSS---------------------EEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCce----ec-cCCCceEEEEECCCCC---------------------EEEEEecCCCCCcEEEEEECCCCe
Confidence 6533 21 2667799999986553 334444433 679999976654
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.75 E-value=9e-16 Score=172.96 Aligned_cols=149 Identities=8% Similarity=0.059 Sum_probs=103.6
Q ss_pred EEEEeCCCE-EEEEECCCcEEEEEcCCCceeeeeecC-CCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCee-eeec
Q 001321 82 LEFLQNQGF-LISITNDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKL-FQLP 157 (1100)
Q Consensus 82 l~fs~d~~~-Lls~s~d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l-~~~~ 157 (1100)
..|.+++.+ +++.+.++.|.+||+.++++....... ..+ +++|+|+++++++++. ++.|.+|+.+. +++ ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~-- 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVV-- 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS--SSCEEE--
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEE--
Confidence 456666566 556667899999999999988777543 445 9999999998877776 78787777654 443 21
Q ss_pred eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC---EEEEEEccCCEEEEEecCCcccccccccCCCCCC
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA---LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEG 234 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg---~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~ 234 (1100)
.+..+. .+..+++|+| +|+++++++.++ .|.+||+.+++.+.....
T Consensus 78 -~~~~~~------------~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------------- 126 (331)
T 3u4y_A 78 -AIQEGQ------------SSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---------------- 126 (331)
T ss_dssp -EEEECS------------SCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC----------------
T ss_pred -ecccCC------------CCccceEECC--CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC----------------
Confidence 133222 3444489988 788788555553 899999999987765433
Q ss_pred CCccccCCCCCCCCCCceEEEEEecCCCCEEEEE-EcCCc-EEEEecCC
Q 001321 235 DSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGD-ILLWNTST 281 (1100)
Q Consensus 235 ~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg-~~DG~-I~lWd~~~ 281 (1100)
.....+++|. |+|++++++ ..++. |.+|++..
T Consensus 127 --------------~~~~~~~~~s-pdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 127 --------------PYDAVGIAIS-PNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp --------------CTTEEEEEEC-TTSSCEEEEEETTTTEEEEEEECT
T ss_pred --------------CCCccceEEC-CCCCEEEEEecCCCceEEEEEECC
Confidence 3446789985 999866555 55588 99999863
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.73 E-value=2.7e-15 Score=170.42 Aligned_cols=208 Identities=12% Similarity=0.102 Sum_probs=154.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEEC-------CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEE
Q 001321 30 VHYGIPATASILAFDHIQRLLAIATL-------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQ 101 (1100)
Q Consensus 30 ~~~G~~~~v~~la~sp~~~lLA~gs~-------dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~ 101 (1100)
....+...+..++|+|++++|++++. ++.|.+||....+..........+..++|++++++++.++. ++.|.
T Consensus 35 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 35 LRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 33445567889999999999999884 46899999977766655555556789999999997766654 78999
Q ss_pred EEEcCCCceeeeeecCC----------CeEEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001321 102 VWSLESRSLACCLKWES----------NITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 102 vWd~~s~~~l~~~~~~~----------~Vt~~~~s~~~~~l~~G~--~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
+||+.+++.+..+.... .+.+++++|+++++++++ .++.|.+|+.+ +++.... ++.+.
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~--~~~~~~~---~~~~~----- 184 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG--NIKLKTA---IQNTG----- 184 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT--TTEEEEE---ECCCC-----
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC--CCceEEE---ecCCC-----
Confidence 99999999887775432 278999999999988887 36777666654 4555532 43222
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCC
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~ 249 (1100)
..+.+++|+| ++++++++..++.|.+||+.+++........ . ....
T Consensus 185 -------~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--------------~-----------~~~~ 230 (353)
T 3vgz_A 185 -------KMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLL--------------D-----------DGKE 230 (353)
T ss_dssp -------TTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECC--------------C-----------SSSC
T ss_pred -------CccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--------------C-----------CCCC
Confidence 3467889988 7888999999999999999999876544210 0 0014
Q ss_pred CceEEEEEecCCCCEEEEEEcC-CcEEEEecCCC
Q 001321 250 KEISALCWASSSGSILAVGYID-GDILLWNTSTT 282 (1100)
Q Consensus 250 ~~V~sl~w~spdg~~l~sg~~D-G~I~lWd~~~~ 282 (1100)
..+.+++|. |+|+++++++.+ +.|.+||..++
T Consensus 231 ~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 231 HFFINISLD-TARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CCEEEEEEE-TTTTEEEEEESSSSEEEEEETTTC
T ss_pred cccceEEEC-CCCCEEEEEeCCCCEEEEEECCCC
Confidence 467788986 999987777654 89999998654
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.72 E-value=5.2e-15 Score=168.02 Aligned_cols=168 Identities=12% Similarity=0.118 Sum_probs=122.6
Q ss_pred CCCCCEEEEEEEeCCCEEEEEEC-------CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEE
Q 001321 74 PSQLPYKNLEFLQNQGFLISITN-------DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIK 145 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~s~-------d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~ 145 (1100)
+....+..++|+|++++|++++. ++.|.+||..+++.+..+.....+.+++++|++++++++.. ++.|.+|+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 34456889999999999988874 46799999999999988877777899999999997776655 68777776
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE--cCCEEEEEEccCCEEEEEec-CCccc
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY--ENALVILWDVSEAQIIFVGG-GKDLQ 222 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~--~dg~V~lwdl~~~~~~~~~~-~~~~~ 222 (1100)
.. +++.... ++.+.... ........+.+++|+| ++++++++. .++.|.+||+.+++...... +
T Consensus 118 ~~--~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~---- 183 (353)
T 3vgz_A 118 AK--TGEVKGR---LVLDDRKR---TEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT---- 183 (353)
T ss_dssp TT--TCCEEEE---EESCCCCC---CSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCC----
T ss_pred CC--CCeeEEE---EecCCCcc---ccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCC----
Confidence 54 3555432 32211000 0000112378899988 677777776 47899999999998876653 2
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
...+.+++|. |+|++++++..++.|.+||..++
T Consensus 184 --------------------------~~~~~~~~~s-~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 184 --------------------------GKMSTGLALD-SEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp --------------------------CTTCCCCEEE-TTTTEEEEECTTSEEEEEETTTT
T ss_pred --------------------------CCccceEEEC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 3335667875 99999999999999999998654
No 145
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.2e-16 Score=198.50 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=104.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCC-C---CEEEEEEEeCCCEEEEEEC---------CCcEEEEEc
Q 001321 39 SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQ-L---PYKNLEFLQNQGFLISITN---------DNEIQVWSL 105 (1100)
Q Consensus 39 ~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~-~---~V~~l~fs~d~~~Lls~s~---------d~~I~vWd~ 105 (1100)
..++|+|++++++++ .||.|++|+..+.+......+. . .|..++|||||++|+.++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 478999999776655 6999999999766655444433 2 4999999999999998876 689999999
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC-----CCCCCeE
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL-----LSHQPVV 180 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~-----~~~~~V~ 180 (1100)
.+++.+........+.+++|+|++++|+.+. ++.|++|+.+. +...+. ...++...-..+.+. .-.....
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~--g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG--DPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT--SCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCC--CCcEEE--ecCCCcCCeEcccccceeeeecccCcc
Confidence 9998743233346789999999999999885 67888887754 333221 011111000000000 0001235
Q ss_pred EEEeccCCCCCEEEEEEcC
Q 001321 181 GVLPHPNSSGNRVLIAYEN 199 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~d 199 (1100)
+++|+| +|++|++++.|
T Consensus 173 ~~~wSP--DG~~la~~~~d 189 (719)
T 1z68_A 173 ALWWSP--NGKFLAYAEFN 189 (719)
T ss_dssp CEEECT--TSSEEEEEEEE
T ss_pred cEEECC--CCCEEEEEEEC
Confidence 899988 79889888765
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=4.3e-15 Score=167.36 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=131.4
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCce-eeeeec
Q 001321 41 LAFDHIQRL-LAIATLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL-ACCLKW 116 (1100)
Q Consensus 41 la~sp~~~l-LA~gs~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~-l~~~~~ 116 (1100)
..|++++++ ++++..++.|++||....+.. ....+..++ .++|+|++.+|++++. ++.|.+||+.++++ ......
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456665555 667777899999999765554 333344556 9999999998887776 88999999999987 666655
Q ss_pred CCCeEE-EEEecCCCEEEEEeCCC---cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 117 ESNITA-FSVISGSHFMYIGDENG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 117 ~~~Vt~-~~~s~~~~~l~~G~~dG---~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
...... ++++|++++++++..++ .|.+|+++. ++.... ++.. ..+.+++|+| +|++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~---~~~~-------------~~~~~~~~sp--dg~~ 141 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFIST---IPIP-------------YDAVGIAISP--NGNG 141 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEE---EECC-------------TTEEEEEECT--TSSC
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEE---EECC-------------CCccceEECC--CCCE
Confidence 544455 99999999999666663 798888653 444432 3321 4578999988 6764
Q ss_pred EEEE-EcCCE-EEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-
Q 001321 193 VLIA-YENAL-VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY- 269 (1100)
Q Consensus 193 ll~~-~~dg~-V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~- 269 (1100)
++++ ..++. |.+|++.....+...... .+. ....+.+++|. |+|+++++++
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~------~~~-------------------~~~~~~~~~~s-pdg~~l~v~~~ 195 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTGQE------FIS-------------------GGTRPFNITFT-PDGNFAFVANL 195 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEE------EEC-------------------SSSSEEEEEEC-TTSSEEEEEET
T ss_pred EEEEecCCCceEEEEEECCCCcEeecCCc------ccc-------------------CCCCccceEEC-CCCCEEEEEeC
Confidence 5554 55577 999998864322111010 000 03346788885 9999766555
Q ss_pred cCCcEEEEecCCC
Q 001321 270 IDGDILLWNTSTT 282 (1100)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1100)
.++.|.+||+.++
T Consensus 196 ~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 196 IGNSIGILETQNP 208 (331)
T ss_dssp TTTEEEEEECSST
T ss_pred CCCeEEEEECCCC
Confidence 6889999998654
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.70 E-value=1e-15 Score=187.43 Aligned_cols=154 Identities=9% Similarity=0.026 Sum_probs=112.8
Q ss_pred CCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeeeeecC-CCeEEEEEecCCCEEEEEeC---CCcEEEEEEec--
Q 001321 76 QLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDE---NGLMSVIKYDA-- 148 (1100)
Q Consensus 76 ~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~s~~~~~l~~G~~---dG~V~Iw~~d~-- 148 (1100)
..+|..++|+|||++|++++. |+++.||++.+++......+. ..+.+++|+|+ +.+++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 458999999999999999887 999999999888777666666 58999999999 78887775 45678888876
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccccccccc
Q 001321 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVV 228 (1100)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~ 228 (1100)
...... +... ..+...+|+|..++. +++...++.+.+||+.+++...+..+
T Consensus 100 ~g~~~~-----l~~~-------------~~~~~~~~s~dg~~~-~~~s~~~~~~~l~d~~~g~~~~l~~~---------- 150 (582)
T 3o4h_A 100 PGEEQR-----LEAV-------------KPMRILSGVDTGEAV-VFTGATEDRVALYALDGGGLRELARL---------- 150 (582)
T ss_dssp TTCCEE-----CTTS-------------CSBEEEEEEECSSCE-EEEEECSSCEEEEEEETTEEEEEEEE----------
T ss_pred CCcccc-----ccCC-------------CCceeeeeCCCCCeE-EEEecCCCCceEEEccCCcEEEeecC----------
Confidence 433221 2211 234456777754444 44444555556999999987766543
Q ss_pred CCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC----CcEEEEecCCC
Q 001321 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID----GDILLWNTSTT 282 (1100)
Q Consensus 229 ~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D----G~I~lWd~~~~ 282 (1100)
.. .+++|. |||++|++++.+ +.|.+||+.++
T Consensus 151 --------------------~~--~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g 185 (582)
T 3o4h_A 151 --------------------PG--FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSG 185 (582)
T ss_dssp --------------------SS--CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTC
T ss_pred --------------------CC--ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCC
Confidence 22 577775 999999988877 77999987654
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.69 E-value=6.7e-16 Score=194.18 Aligned_cols=172 Identities=12% Similarity=0.213 Sum_probs=114.0
Q ss_pred CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCC----CeEEEEEecCCCEEEEEeCC---------CcEEE
Q 001321 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES----NITAFSVISGSHFMYIGDEN---------GLMSV 143 (1100)
Q Consensus 77 ~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~----~Vt~~~~s~~~~~l~~G~~d---------G~V~I 143 (1100)
..+..++|+|||.++++ +.|++|.+||+.+++....+.... .|.+++|+|++++|+++..+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 34678899999987766 789999999999998776665443 49999999999999999764 66778
Q ss_pred EEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecC-Cccc
Q 001321 144 IKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG-KDLQ 222 (1100)
Q Consensus 144 w~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~-~~~~ 222 (1100)
|+++. ++... +.... .+...+.+++|+| +|++|+.++. +.|.+||+.+++....... ....
T Consensus 96 ~d~~~--~~~~~----l~~~~---------~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~ 157 (723)
T 1xfd_A 96 SKIPH--GDPQS----LDPPE---------VSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV 157 (723)
T ss_dssp EESSS--CCCEE----CCCTT---------CCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT
T ss_pred EECCC--CceEe----ccCCc---------cccccccccEECC--CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc
Confidence 87764 33322 22111 1114578899988 7887888776 7899999999876554321 0000
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC-CcEEEEecC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNTS 280 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D-G~I~lWd~~ 280 (1100)
+. .+..+-+ ..+.....+.+++|. |||++|++++.| +.+.+|++.
T Consensus 158 ~~-----------~g~~~~v-~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 158 IY-----------NGLSDWL-YEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp EE-----------EEECCHH-HHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEEC
T ss_pred eE-----------Cccccee-EEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEee
Confidence 00 0000000 000001245788985 999999988765 467888875
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=2.3e-14 Score=162.69 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=108.3
Q ss_pred ccCCCCcEEEEEecCCcEEEeeCC-CCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEE-EecCceEEEEEecC
Q 001321 490 KCHSVDRVYLAGYHDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAV-GNEFGLVYIYNLNG 567 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DGtIriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Las-g~~dG~V~lw~l~~ 567 (1100)
+++|+++++++...++.|++||+. .+.+.....+ .......+..++|+||+++|++ +..++.|.+|++..
T Consensus 147 ~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 147 DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL--------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE--------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE--------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 678888888888889999999998 5554322111 1112236788999999996665 45689999999986
Q ss_pred CCCCcceeeeccCCCceeeccCCCcceeEEEEeecC------cCeEEEEEcCCCCEEE-EEeCCceEEEEecCC-ceEEE
Q 001321 568 SLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVN------SPVRALQFTSSGAKLA-VGFECGRVAVLDMNL-LSVLF 639 (1100)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~------~~VtsLafSp~g~~La-vGs~dG~V~vwD~~~-~~~~~ 639 (1100)
..... .....+.... ..+..++|+|+|++|+ ++..++.|.+||+.. +....
T Consensus 219 ~~g~~---------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~ 277 (347)
T 3hfq_A 219 QTGAF---------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTL 277 (347)
T ss_dssp TTTEE---------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEE
T ss_pred CCCce---------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEE
Confidence 32110 0111222222 3588999999999875 556689999999973 22221
Q ss_pred EeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEe-cceeEEEE--eCCCCcccc
Q 001321 640 FTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLF-KDAKISIV--GGSSENMIS 706 (1100)
Q Consensus 640 ~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt-~dg~v~v~--d~~~g~~l~ 706 (1100)
. .....+...+.+++|++++.. |+++. .++.|.+| |..+|.+..
T Consensus 278 ~-~~~~~~~~~~~~~~~spdg~~----------------------l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 278 I-QQISTEGDFPRDFDLDPTEAF----------------------VVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp E-EEEECSSSCCCEEEECTTSSE----------------------EEEEETTTTEEEEEEECTTTCCEEE
T ss_pred e-EEEecCCCCcCeEEECCCCCE----------------------EEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 1 122235567889999865533 66665 45999999 555666543
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=9.4e-14 Score=158.67 Aligned_cols=138 Identities=11% Similarity=0.036 Sum_probs=93.0
Q ss_pred ccCCCCcEEEEEe-cCCcEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEecC--ceEEEEEec
Q 001321 490 KCHSVDRVYLAGY-HDGSVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNEF--GLVYIYNLN 566 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~-~DGtIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~d--G~V~lw~l~ 566 (1100)
+++|++++++++. .+++|++||+..+.+..+..+. ....+...+.+++|+||+++|+++..+ +.|.+|+++
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 5778887665555 7899999999877654332221 122334557899999999998777665 899999997
Q ss_pred CCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCCEEEEEe-CCceEEEE--ecCCceEEEEeec
Q 001321 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGAKLAVGF-ECGRVAVL--DMNLLSVLFFTDD 643 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~~LavGs-~dG~V~vw--D~~~~~~~~~~~~ 643 (1100)
..... ...+..+.. ...+++++|+|+|++|++++ .++.|.+| |..++++......
T Consensus 291 ~~~g~---------------------~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 348 (361)
T 3scy_A 291 ETNGT---------------------LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD 348 (361)
T ss_dssp TTTCC---------------------EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC
T ss_pred CCCCc---------------------EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee
Confidence 43111 012222233 45688999999999998887 67899995 5557776522211
Q ss_pred CCCCCCCeEEEEEe
Q 001321 644 ISGSSSPIISMTWT 657 (1100)
Q Consensus 644 ~~~~~~~V~sl~fs 657 (1100)
.+-..++||.|.
T Consensus 349 --~~~~~p~~v~~~ 360 (361)
T 3scy_A 349 --IKVDKPVCLKFV 360 (361)
T ss_dssp --EECSSEEEEEEE
T ss_pred --eeCCCCeEEEEc
Confidence 144578888885
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.68 E-value=6.3e-15 Score=162.08 Aligned_cols=201 Identities=8% Similarity=0.040 Sum_probs=151.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeC-CC-CCCEEEEEEEeCCCEEEEEEC--CCcEEEEE-
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLIS-PS-QLPYKNLEFLQNQGFLISITN--DNEIQVWS- 104 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~-~h-~~~V~~l~fs~d~~~Lls~s~--d~~I~vWd- 104 (1100)
..+++..+.+++|+|++++||+++ ++.|++|+... .+..... .| ...|.+++|+|++.+|++++. ++...||.
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence 455788999999999999999987 88999999976 5444333 34 468899999999999999983 34555555
Q ss_pred -cCCCceeeeeecCCCeEEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 105 -LESRSLACCLKWESNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 105 -~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~-~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
+.+++. ..+.....+.+++|+|++++++ ++..++.++||+++...+.... +..+. ..+.++
T Consensus 116 ~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~------------~~~~~~ 178 (297)
T 2ojh_A 116 PSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----LTHGE------------GRNDGP 178 (297)
T ss_dssp ETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE----CCCSS------------SCEEEE
T ss_pred ECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE----cccCC------------Cccccc
Confidence 455553 3344445599999999999887 7788999999999876655443 33333 679999
Q ss_pred EeccCCCCCEEEEEE-cCCEEEEEEcc--CCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 183 LPHPNSSGNRVLIAY-ENALVILWDVS--EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~-~dg~V~lwdl~--~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
.|+| ++..+++++ .++.+.+|++. ++....+..+ ...+.+++|.
T Consensus 179 ~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~s- 225 (297)
T 2ojh_A 179 DYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS------------------------------AYGDWFPHPS- 225 (297)
T ss_dssp EECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCC------------------------------SEEEEEEEEC-
T ss_pred eECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecC------------------------------CcccCCeEEC-
Confidence 9988 687777766 48888999886 3344333333 5578889985
Q ss_pred CCCCEEEEEEcC-----------CcEEEEecCCC
Q 001321 260 SSGSILAVGYID-----------GDILLWNTSTT 282 (1100)
Q Consensus 260 pdg~~l~sg~~D-----------G~I~lWd~~~~ 282 (1100)
|+|++|++++.+ +.|.+||+.++
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 999999988876 56999998765
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.67 E-value=6.1e-14 Score=159.21 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=93.5
Q ss_pred CCcEEEEEcC--CCcee--eeeecCCCeEEEEEecCCCEEEEEeC---CCcEEEEEEecCCCeeeeeceeeccccccccc
Q 001321 97 DNEIQVWSLE--SRSLA--CCLKWESNITAFSVISGSHFMYIGDE---NGLMSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 97 d~~I~vWd~~--s~~~l--~~~~~~~~Vt~~~~s~~~~~l~~G~~---dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
++.|.+|++. ++++. ....+...+..++|+|+++ +++++. ++.|++|+++. +.+... ..+..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~--g~~~~~-~~~~~~~----- 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG--QTAHKL-NTVVAPG----- 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET--TEEEEE-EEEEEES-----
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecC--CcEEEe-eeeecCC-----
Confidence 4557777664 55543 3345567788999999999 666654 58899999864 443321 1122222
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEcc-CCEEEE--EecCCcccccccccCCCCCCCCccccCCCCC
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVS-EAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~-~~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~ 245 (1100)
..+..++|+| +|++|+++. .++.|.+|++. ++.... ...+. ..++. .
T Consensus 86 -------~~p~~~a~sp--dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-----------~~~p~---------~ 136 (347)
T 3hfq_A 86 -------TPPAYVAVDE--ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-----------GHGPR---------P 136 (347)
T ss_dssp -------CCCSEEEEET--TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-----------CCCSS---------T
T ss_pred -------CCCEEEEECC--CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-----------CCCCC---------c
Confidence 5688999988 788788877 67999999996 333322 22110 00000 0
Q ss_pred CCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 246 ~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
......+.+++|. |+|+.+++...++.|.+|++.
T Consensus 137 ~~~~~~~~~~~~s-pdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 137 EQDGSHIHYTDLT-PDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp TCSSCCEEEEEEC-TTSCEEEEETTTTEEEEEEEC
T ss_pred cccCCCceEEEEC-CCCcEEEEeCCCCEEEEEEEC
Confidence 0114568889985 999966666678899999986
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.67 E-value=1e-14 Score=165.19 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=114.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCC--CEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceeeeeec
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL--PYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~--~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
.+++++++.++++++.++.|++||....+.+....... .+..++|+|++.+++.++ .++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788999999999999999999997766553333233 678999999998765554 688999999999988777654
Q ss_pred CC-------CeEEEEEecCCCEEEEEeCC------------CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCC
Q 001321 117 ES-------NITAFSVISGSHFMYIGDEN------------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 117 ~~-------~Vt~~~~s~~~~~l~~G~~d------------G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~ 177 (1100)
.. .+.+++|+|++++++++..+ +.|.+|++.. ++.......+.. ..
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~-------------~~ 148 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPM-------------PR 148 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEEC-------------CS
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--ccccceeeeccC-------------CC
Confidence 32 37899999999999999865 8888888764 221111001111 14
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
.+.+++|+| +|+ +++++ +.|.+||+.+++....+
T Consensus 149 ~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 149 QVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp SCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEE
T ss_pred cccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccc
Confidence 578889988 677 66653 34899999998776544
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.65 E-value=1.4e-14 Score=177.23 Aligned_cols=193 Identities=10% Similarity=0.063 Sum_probs=141.3
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCceEEEeCCCC-CCEEEEEEEeCCCEEEEEEC---CCcEEEEEcCC--
Q 001321 35 PATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGLLISPSQ-LPYKNLEFLQNQGFLISITN---DNEIQVWSLES-- 107 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~~~~~~~h~-~~V~~l~fs~d~~~Lls~s~---d~~I~vWd~~s-- 107 (1100)
...|.+++|+|||+.||.++. ||.++||+.++.+...+..|. ..|..++|+|| ..+++.+. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 446999999999999999887 999999999877777666666 58999999999 67777765 45556655533
Q ss_pred -CceeeeeecCCCeEEEEEecCCCE-EEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 108 -RSLACCLKWESNITAFSVISGSHF-MYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 108 -~~~l~~~~~~~~Vt~~~~s~~~~~-l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
+... .+.....+...+|+|+++. +++...++.+.+|+++. ++..+ +..+. . .+++|+
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~--g~~~~----l~~~~------------~--~~~~~s 158 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDG--GGLRE----LARLP------------G--FGFVSD 158 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEET--TEEEE----EEEES------------S--CEEEEE
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccC--CcEEE----eecCC------------C--ceEEEC
Confidence 2222 3323334556788888763 33444444456998874 44443 22111 2 788898
Q ss_pred cCCCCCEEEEEEcC----CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 186 PNSSGNRVLIAYEN----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 186 P~~~g~~ll~~~~d----g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
| +|++++.++.+ +.|.+||+.+++...+.++ ...+.+++|. ||
T Consensus 159 p--DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~------------------------------~~~~~~~~~S-pD 205 (582)
T 3o4h_A 159 I--RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSG------------------------------EGSFSSASIS-PG 205 (582)
T ss_dssp E--ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCS------------------------------SCEEEEEEEC-TT
T ss_pred C--CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecC------------------------------CCccccceEC-CC
Confidence 8 79988888777 7899999999887766665 6678899985 99
Q ss_pred CCEEEEEEcCC--cEEEEecCCC
Q 001321 262 GSILAVGYIDG--DILLWNTSTT 282 (1100)
Q Consensus 262 g~~l~sg~~DG--~I~lWd~~~~ 282 (1100)
|++|+++..+| .|.+||+.++
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTTC
T ss_pred CCEEEEccCCCeeEEEEEcCCCC
Confidence 99999888888 8999998654
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.65 E-value=1.1e-15 Score=179.11 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=147.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-----------eEE-----EeCCCCCCEEEEEEEeCCCEEE----EEE
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGI-----------EGL-----LISPSQLPYKNLEFLQNQGFLI----SIT 95 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-----------~~~-----~~~~h~~~V~~l~fs~d~~~Ll----s~s 95 (1100)
..++++|+++++.+||+|+.|| |+||+.... ... ....|..+|.+++|+|++.+|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3588999999999999999988 899864211 111 2245677899999999999999 677
Q ss_pred CCCcEEEEEcCCC--------cee---eee-ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeeceeecc
Q 001321 96 NDNEIQVWSLESR--------SLA---CCL-KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYNISA 162 (1100)
Q Consensus 96 ~d~~I~vWd~~s~--------~~l---~~~-~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~ 162 (1100)
.|++|+|||+.++ +.+ ..+ .|...|++++|+|+ +.++++|+.||+|+||++... ... ....+
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--~~~---~~~~~ 190 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--VKV---CATLP 190 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--EEE---EEEEC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--cce---eeccC
Confidence 8999999998765 222 222 46789999999998 789999999999999999753 222 22333
Q ss_pred cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCC
Q 001321 163 DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGI 242 (1100)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~ 242 (1100)
|. ..|.+++|+| +|++|++|+.||.|++||++.........|...
T Consensus 191 ~~------------~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~--------------------- 235 (434)
T 2oit_A 191 ST------------VAVTSVCWSP--KGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFY--------------------- 235 (434)
T ss_dssp GG------------GCEEEEEECT--TSSCEEEEETTSCEEEECTTCCEEEEECCCTTC---------------------
T ss_pred CC------------CceeEEEEcC--CCCEEEEEcCCCcEEEEccCCcccccccCCccc---------------------
Confidence 44 7899999988 688899999999999999983333333222000
Q ss_pred CCCCCCCCceEEEEEecCCCCEEEEE-EcCC------cEEEEecCCC
Q 001321 243 SEHQPEEKEISALCWASSSGSILAVG-YIDG------DILLWNTSTT 282 (1100)
Q Consensus 243 ~~~~~~~~~V~sl~w~spdg~~l~sg-~~DG------~I~lWd~~~~ 282 (1100)
...+...|.+++|. +++.++++. ..|| .+++|++...
T Consensus 236 --~~~~~~~v~~v~w~-~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 --ESDHPVRVLDVLWI-GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp --CTTSCEEEEEEEEE-ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred --CCCCceeEEEEEEe-cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00113479999997 777766543 3343 3899998754
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.3e-14 Score=179.99 Aligned_cols=163 Identities=14% Similarity=0.233 Sum_probs=106.2
Q ss_pred EEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCC----CeEEEEEecCCCEEEEEeC---------CCcEEEEEEe
Q 001321 81 NLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWES----NITAFSVISGSHFMYIGDE---------NGLMSVIKYD 147 (1100)
Q Consensus 81 ~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~----~Vt~~~~s~~~~~l~~G~~---------dG~V~Iw~~d 147 (1100)
.++|+||+. ++..+.|++|.+||+.+++....+.+.. .|.+++|+|++++|++++. ++.|++|+++
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 779999984 5555579999999999998877665443 3899999999999998876 6888888765
Q ss_pred cCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec--CCcccccc
Q 001321 148 ADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG--GKDLQLKD 225 (1100)
Q Consensus 148 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~--~~~~~~~~ 225 (1100)
. ++.... ..+. ..+.+++|+| +|++|+.+. ++.|++||+.+++...+.. +....+.
T Consensus 99 ~--g~~~~~-~~l~---------------~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~- 156 (719)
T 1z68_A 99 N--GEFVRG-NELP---------------RPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFN- 156 (719)
T ss_dssp T--TEECCS-SCCC---------------SSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEE-
T ss_pred C--Cccccc-eecC---------------cccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEc-
Confidence 3 444100 0121 4578899988 788787775 7899999999887654321 1000000
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC-CcEEEEec
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID-GDILLWNT 279 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D-G~I~lWd~ 279 (1100)
|.+.. + ..+.-.....+++|. |||++|++++.| +.+.+|.+
T Consensus 157 -------g~~~~----v-~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 157 -------GIPDW----V-YEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp -------SSCCH----H-HHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEE
T ss_pred -------ccccc----e-eeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEe
Confidence 00000 0 000001223578885 999999998765 44555544
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.60 E-value=1.5e-12 Score=148.75 Aligned_cols=205 Identities=7% Similarity=0.073 Sum_probs=141.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCC--ceE--EE-eCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEE
Q 001321 34 IPATASILAFDHIQRLLAIATLD----GRIKVIGGDG--IEG--LL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVW 103 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~d----G~I~vw~~~~--~~~--~~-~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vW 103 (1100)
....+..++|+|++++|++++.+ |.|.+|+++. .+. +. ...+......+++ ++.+|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56678889999999999999986 8999998854 222 22 2235556778888 778888877 57899999
Q ss_pred EcCCCceee----eeec-----------CCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCC----e-eeee----ce
Q 001321 104 SLESRSLAC----CLKW-----------ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEG----K-LFQL----PY 158 (1100)
Q Consensus 104 d~~s~~~l~----~~~~-----------~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~----~-l~~~----~~ 158 (1100)
++.....+. ...+ ...+.+++|+|+++++++++. ++.|++|+++...+ + +... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543221 1112 124588999999998877664 78999999987654 3 3210 01
Q ss_pred eecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCc
Q 001321 159 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1100)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 237 (1100)
.++. ...+.+++|+| +|++++++. .++.|.+||+.++.+....... ...
T Consensus 206 ~~~~-------------~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~------~~~--------- 255 (361)
T 3scy_A 206 KVAP-------------GSGPRHLIFNS--DGKFAYLINEIGGTVIAFRYADGMLDEIQTVA------ADT--------- 255 (361)
T ss_dssp ECCT-------------TCCEEEEEECT--TSSEEEEEETTTCEEEEEEEETTEEEEEEEEE------SCS---------
T ss_pred ecCC-------------CCCCeEEEEcC--CCCEEEEEcCCCCeEEEEEecCCceEEeEEEe------cCC---------
Confidence 1111 14578999988 788787777 5889999999988654332110 000
Q ss_pred cccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC--CcEEEEecC
Q 001321 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYID--GDILLWNTS 280 (1100)
Q Consensus 238 ~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D--G~I~lWd~~ 280 (1100)
........++|. |||++|+++..+ +.|.+|++.
T Consensus 256 ---------~~~~~~~~i~~s-pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 256 ---------VNAQGSGDIHLS-PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp ---------SCCCCEEEEEEC-TTSSEEEEEECSSSCEEEEEEEC
T ss_pred ---------CCCCCcccEEEC-CCCCEEEEECCCCCCEEEEEEEc
Confidence 002345788885 999998777665 889999985
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.59 E-value=7.7e-13 Score=151.48 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=126.2
Q ss_pred EEEEEECC--CeEEEEeC--CCceEEEe----CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC-CCceeeeeec--C
Q 001321 49 LLAIATLD--GRIKVIGG--DGIEGLLI----SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-SRSLACCLKW--E 117 (1100)
Q Consensus 49 lLA~gs~d--G~I~vw~~--~~~~~~~~----~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~-s~~~l~~~~~--~ 117 (1100)
+|.+|+.. +.|.+|.+ ...+.... .++...+..++|+||+.+|++++.+ .|.+||+. ++++.....+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 46667754 56888765 23332211 1344578899999999999999887 99999997 7776544332 2
Q ss_pred CCeEEEEEecCCCE--EEEEe-------------CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 118 SNITAFSVISGSHF--MYIGD-------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 118 ~~Vt~~~~s~~~~~--l~~G~-------------~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
+.+.+++++|++++ +++++ .+|.+.+|+++.+ +.+......++.. ....+.++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~-----------~~~~~~~~ 150 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQ-----------ENTGIHGM 150 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECC-----------TTCCEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeC-----------CCCcceEE
Confidence 45677999999994 55554 6899999999753 3333210001100 11568999
Q ss_pred EeccCCCCCEEEEEEc-CCEEEEEEcc-CCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 183 LPHPNSSGNRVLIAYE-NALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~~-dg~V~lwdl~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
+|+| +|++++++.. ++.|.+||+. ++++...... .++ .+...+..++|. |
T Consensus 151 ~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~-------~~~------------------~~g~~p~~~~~s-p 202 (365)
T 1jof_A 151 VFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSV-------DAP------------------DPGDHPRWVAMH-P 202 (365)
T ss_dssp EECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEE-------ECS------------------STTCCEEEEEEC-T
T ss_pred EECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE-------ecC------------------CCCCCCCEeEEC-C
Confidence 9988 7887777664 6799999998 6765322110 000 002347788875 9
Q ss_pred CCCEEEEEEc-CCcEEEEecC
Q 001321 261 SGSILAVGYI-DGDILLWNTS 280 (1100)
Q Consensus 261 dg~~l~sg~~-DG~I~lWd~~ 280 (1100)
+|+++++++. ++.|.+|++.
T Consensus 203 dg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 203 TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEECCCCeEEEEEEe
Confidence 9999988775 6889999764
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.59 E-value=3.3e-13 Score=169.93 Aligned_cols=175 Identities=13% Similarity=0.035 Sum_probs=115.7
Q ss_pred ccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeCCCCCC-----EEEEEEEeCCCEEEEEECC
Q 001321 24 LNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLISPSQLP-----YKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~~h~~~-----V~~l~fs~d~~~Lls~s~d 97 (1100)
|.+++....++......++|+|++++++++ ||.|++|+....+ ..++..|... ...++|||||++|+..+.+
T Consensus 5 ~tl~~~~~~~~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 82 (740)
T 4a5s_A 5 YTLTDYLKNTYRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (740)
T ss_dssp CCHHHHHHTCSCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred eeHHHHhcCcccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence 444455555556667789999999999997 9999999996544 4455555432 2448999999999998875
Q ss_pred ---------CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 98 ---------NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 98 ---------~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
+.+.+||+.++++.....+.+.+...+|+|++++||.+. ++.|++|+.+. +...+. +..++.....
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~--~~~~~l--t~~g~~~~~~ 157 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN--LPSYRI--TWTGKEDIIY 157 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT--SCCEEC--CSCCBTTTEE
T ss_pred eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC--CceEEE--cCCCCcccee
Confidence 567799999998877667778899999999999999884 57788877654 333321 1111110000
Q ss_pred cCCCC-----CCCCCeEEEEeccCCCCCEEEEEEcCC-EEEEEEc
Q 001321 169 AGFPL-----LSHQPVVGVLPHPNSSGNRVLIAYENA-LVILWDV 207 (1100)
Q Consensus 169 ~~~~~-----~~~~~V~sv~f~P~~~g~~ll~~~~dg-~V~lwdl 207 (1100)
.+.+. .-.+...++.|+| +|++|+.+..|. .|.+|++
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEE
T ss_pred cCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEE
Confidence 00000 0002234688988 798888776433 2444443
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=3e-13 Score=152.11 Aligned_cols=205 Identities=13% Similarity=0.033 Sum_probs=150.0
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCceEEEe--CCC----CCCEEEEEEEeCCCEEEEEE------------CC
Q 001321 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLLI--SPS----QLPYKNLEFLQNQGFLISIT------------ND 97 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~g-s~dG~I~vw~~~~~~~~~~--~~h----~~~V~~l~fs~d~~~Lls~s------------~d 97 (1100)
.+..++|+|++++++++ ..++.|++|+....+.+.. .++ ...+..++|+|++.+|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 58889999999876555 4578999999976655432 232 22677899999999998886 57
Q ss_pred CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc--cc-------cc
Q 001321 98 NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA--LS-------EK 168 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~--~~-------~~ 168 (1100)
+.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|++|+... +++... ++... .. +.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~--~~~~~~---~~~~~~~~~~~~s~dg~~ 187 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEA--GTLVED---KPIQSWEAETYAQPDVLA 187 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTT--TEEEEE---ECSTTTTTTTBCCCBCCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCC--CcEeee---eeccccCCCceeCCCccE
Confidence 99999999999888887777788999999999999988 68888888653 333321 11110 00 00
Q ss_pred cCCC---------------------------------------------CCCCCCeEEEEeccCCCCCEEEEEEcCCEEE
Q 001321 169 AGFP---------------------------------------------LLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1100)
Q Consensus 169 ~~~~---------------------------------------------~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~ 203 (1100)
+... ..+...+.+++|+| +|++++++ ++.|.
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP--AKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT--TSSEEEEE--ESEEE
T ss_pred EeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC--CCCEEEEe--CCeEE
Confidence 0000 01123466799987 78877777 79999
Q ss_pred EEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 204 lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
+||+.+++....... ...+.+++|. |+|++|++++.++.|.+||+.+++
T Consensus 264 ~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 264 SFDLEKNASIKRVPL------------------------------PHSYYSVNVS-TDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEETTTTEEEEEEEC------------------------------SSCCCEEEEC-TTSCEEEEESBSSEEEEEETTTCC
T ss_pred EEECCCCcCcceecC------------------------------CCceeeEEEC-CCCCEEEEEcCCCcEEEEECcCCc
Confidence 999999887665433 3456788885 999999999999999999998763
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.55 E-value=4.3e-14 Score=165.70 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=124.0
Q ss_pred cCCCCCeEEEEEcCCCCEEE----EEECCCeEEEEeCCCc------------eEEEeCCCCCCEEEEEEEeC-CCEEEEE
Q 001321 32 YGIPATASILAFDHIQRLLA----IATLDGRIKVIGGDGI------------EGLLISPSQLPYKNLEFLQN-QGFLISI 94 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA----~gs~dG~I~vw~~~~~------------~~~~~~~h~~~V~~l~fs~d-~~~Lls~ 94 (1100)
..+++.|.+++|+|++++|| +|+.||.|+||+.... ......+|..+|.+++|+|+ +.+|+++
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 45678899999999999999 6778999999997432 13345579999999999998 7899999
Q ss_pred ECCCcEEEEEcCCCceeee-eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001321 95 TNDNEIQVWSLESRSLACC-LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~~l~~-~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1100)
+.|++|++||++++..... ..|...|++++|+|++++|++|+.||.|++|+.+ +.... .++.+.. ...
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~---~~~~~---~~~~~~~-----~~~ 237 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT---LQEKK---VIPCPPF-----YES 237 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT---CCEEE---EECCCTT-----CCT
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC---Ccccc---cccCCcc-----cCC
Confidence 9999999999999865533 3567899999999999999999999999999876 22221 1222110 000
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEc--CC------EEEEEEccCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYE--NA------LVILWDVSEA 210 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~--dg------~V~lwdl~~~ 210 (1100)
.+...|.++.|+| ++. +++++. +| .+++|++...
T Consensus 238 ~~~~~v~~v~w~~--~~~-~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 238 DHPVRVLDVLWIG--TYV-FAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TSCEEEEEEEEEE--TTE-EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCceeEEEEEEec--Cce-EEEEEccCCCccCCCCceEEEEeccC
Confidence 1124799999987 454 444443 32 3899999764
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.55 E-value=2.7e-12 Score=146.88 Aligned_cols=167 Identities=8% Similarity=-0.055 Sum_probs=104.1
Q ss_pred ccCCCCcEEEEEe-cCCcEEEeeCC-CCceeEEeeeccceeeeeecCCCCCeeEEEEeeCCCeEEEEec-CceEEEEEec
Q 001321 490 KCHSVDRVYLAGY-HDGSVRIWDAT-YPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFINSSLAVGNE-FGLVYIYNLN 566 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~-~DGtIriWd~~-~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~~~Lasg~~-dG~V~lw~l~ 566 (1100)
+++|++++++++. .+++|++||+. ++.+..... .....|...+..++|+||+++|++++. ++.|.+|+++
T Consensus 151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-------EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 5778888766654 57899999998 666542211 112224567999999999999988775 7899999987
Q ss_pred CCCCCcceeeeccCCCceeeccCCCcceeEEEE----eecCc------CeEEEE-EcCCCCEEEEEeCCc------eEEE
Q 001321 567 GSLDAKNFLFVLETKSEVHALPEGKISLCRAVF----SLVNS------PVRALQ-FTSSGAKLAVGFECG------RVAV 629 (1100)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~h~~------~VtsLa-fSp~g~~LavGs~dG------~V~v 629 (1100)
......... .+.+..+ .+|.. .+..++ |||||++|+++..+. +|.+
T Consensus 224 ~~~g~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v 286 (365)
T 1jof_A 224 PATHMPVYT-----------------HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG 286 (365)
T ss_dssp TTTCCEEEE-----------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred CCCCcEEEc-----------------cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence 532110000 0000001 12222 588999 999999988876432 8999
Q ss_pred EecC-CceEEEEeecCCCCCCCeEEEEEee---cccCccccCCCCCCCCCCCCCCCceEEEEEec-ceeEEEEeCCCC
Q 001321 630 LDMN-LLSVLFFTDDISGSSSPIISMTWTE---FKNTHSLAKNPNHSEREVPVNPAEEVIIVLFK-DAKISIVGGSSE 702 (1100)
Q Consensus 630 wD~~-~~~~~~~~~~~~~~~~~V~sl~fs~---~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~-dg~v~v~d~~~g 702 (1100)
|++. ++++.........+...+..++|++ ++. .|+++.. ++.|.+|+...+
T Consensus 287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~----------------------~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE----------------------WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT----------------------EEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC----------------------EEEEEEcCCCeEEEEEEchh
Confidence 9996 5554421111112334455677775 343 3777765 599999995543
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.53 E-value=1e-12 Score=151.34 Aligned_cols=159 Identities=9% Similarity=0.020 Sum_probs=110.1
Q ss_pred CCceEEEeCCCCCCEEE-----EEEEeCCCEEEEEEC-CC--cEEEEEcCCCceeeeeecCC-CeEEEEEecCCCEEEEE
Q 001321 65 DGIEGLLISPSQLPYKN-----LEFLQNQGFLISITN-DN--EIQVWSLESRSLACCLKWES-NITAFSVISGSHFMYIG 135 (1100)
Q Consensus 65 ~~~~~~~~~~h~~~V~~-----l~fs~d~~~Lls~s~-d~--~I~vWd~~s~~~l~~~~~~~-~Vt~~~~s~~~~~l~~G 135 (1100)
.+.++..+..|...... .+|+|||.+|+.++. ++ .|.+||+.+++......... .+.+.+|+|++++|+.+
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 45566666677766665 889999999999987 56 38889999998776664443 44477899999999999
Q ss_pred eCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE------------------
Q 001321 136 DENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY------------------ 197 (1100)
Q Consensus 136 ~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~------------------ 197 (1100)
..++.|++|+++. ++.... +..+. ..+....|..+.++++++...
T Consensus 99 ~~~~~l~~~d~~~--g~~~~~-~~~~~--------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 99 KDGRNLMRVDLAT--LEENVV-YQVPA--------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp ETTTEEEEEETTT--CCEEEE-EECCT--------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred eCCCeEEEEECCC--Ccceee-eechh--------------hcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence 9999888887664 333322 33332 223333331123677555322
Q ss_pred ----cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-CCCEEEEEEcC
Q 001321 198 ----ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAVGYID 271 (1100)
Q Consensus 198 ----~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-dg~~l~sg~~D 271 (1100)
.+..|.+||+.+++...+..+ ...+..+.|. | ||+.|+.+..+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~l~~~------------------------------~~~~~~~~~s-p~dg~~l~~~~~~ 209 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGESTVILQE------------------------------NQWLGHPIYR-PYDDSTVAFCHEG 209 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEEEEEEE------------------------------SSCEEEEEEE-TTEEEEEEEEECS
T ss_pred hccCCcceEEEEECCCCceEEeecC------------------------------CccccccEEC-CCCCCEEEEEEec
Confidence 346789999999887666544 5567888885 9 99988887754
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.51 E-value=1.9e-12 Score=149.19 Aligned_cols=196 Identities=13% Similarity=0.057 Sum_probs=132.2
Q ss_pred EEEcCCCCEEEEEEC-CC--eEEEEeCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 41 LAFDHIQRLLAIATL-DG--RIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 41 la~sp~~~lLA~gs~-dG--~I~vw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
.+|+||+++||.++. +| .|.+|+.++.+...+.. +...+..++|+||+.+|+.++.++.|.+||+.+++.......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999999998 67 48888997777665544 444555788999999999999999999999999987666544
Q ss_pred CC-CeEE--EEEecCCCEEEEEe--------------------CCCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001321 117 ES-NITA--FSVISGSHFMYIGD--------------------ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1100)
Q Consensus 117 ~~-~Vt~--~~~s~~~~~l~~G~--------------------~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1100)
+. .+.. ..+++++.+++... .+..-.||.++..+++... +..+.
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~----l~~~~--------- 187 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV----ILQEN--------- 187 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE----EEEES---------
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE----eecCC---------
Confidence 43 3332 34589998887432 1122345555555565543 22222
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcC------CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYEN------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~d------g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
..+..+.|+|. +|++|+....+ ..|.+||+.++....+..+ .
T Consensus 188 ---~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~----------------------------~ 235 (388)
T 3pe7_A 188 ---QWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH----------------------------A 235 (388)
T ss_dssp ---SCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC----------------------------C
T ss_pred ---ccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC----------------------------C
Confidence 56889999883 46667777654 2667777776655443322 0
Q ss_pred CCCceEEEEEecCCCCEEEEEEc-CC----cEEEEecCCC
Q 001321 248 EEKEISALCWASSSGSILAVGYI-DG----DILLWNTSTT 282 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~-DG----~I~lWd~~~~ 282 (1100)
....+...+|. |||+.|+..+. ++ .|.+||+.++
T Consensus 236 ~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 236 EGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp TTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCcccccceEC-CCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 01246678885 99998765443 22 3899998765
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.46 E-value=4.2e-11 Score=136.66 Aligned_cols=149 Identities=9% Similarity=0.051 Sum_probs=100.3
Q ss_pred CCCEEEEEE------CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC----------CCcEEEEEEecCC
Q 001321 87 NQGFLISIT------NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADE 150 (1100)
Q Consensus 87 d~~~Lls~s------~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~----------dG~V~Iw~~d~~~ 150 (1100)
++.++..++ .|+.|.+||..+++++..+.....- .++++|+++++|++.. ++.|.+|+.. +
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--K 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--T
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--C
Confidence 555666654 3679999999999988777544334 8999999999999873 5678888754 3
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc--CCEEEEEEccCCEEEEE-ecCCcccccccc
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFV-GGGKDLQLKDGV 227 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~--dg~V~lwdl~~~~~~~~-~~~~~~~~~~~l 227 (1100)
.+.... ..++... ......+..++++| +|++|+++.. ++.|.+||+.+++++.. ...
T Consensus 91 ~~~~~~-i~~~~~~--------~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--------- 150 (361)
T 2oiz_A 91 LTFEKE-ISLPPKR--------VQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--------- 150 (361)
T ss_dssp CCEEEE-EEECTTB--------CCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---------
T ss_pred CcEEEE-EEcCccc--------cccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCCCcEEEEEecC---------
Confidence 444432 2222100 00013467889977 7888888764 57999999999987655 432
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC-CEEEEEEcCCcEEEEecCC
Q 001321 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 228 ~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg-~~l~sg~~DG~I~lWd~~~ 281 (1100)
.+ ...+.+. |++ ..+++.+.||.+.+|+...
T Consensus 151 ---------------------~~-~~~v~~~-p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 151 ---------------------AG-CWSVIPQ-PNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp ---------------------TT-EEEEEEC-TTSSSEEEEEETTSSEEEEEECT
T ss_pred ---------------------CC-cceeEEc-CCCCeeEEEECCCCcEEEEEECC
Confidence 11 1123333 665 6788889999999998753
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.45 E-value=1.8e-12 Score=149.63 Aligned_cols=161 Identities=8% Similarity=-0.020 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCEEEEEECC---CeEEEEeCCCceEEEeCCCCCCEE-EEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 38 ASILAFDHIQRLLAIATLD---GRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~d---G~I~vw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
+..++|+|+|++||..... ..|++|+..+.+...+..+...+. .+.|+|||.+|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 6678999999999888754 378889998777665555544433 478999999999999999999999999876555
Q ss_pred eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 114 LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 114 ~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
...+.. +++++.+++....++...+|.. .+.|+| +++.+
T Consensus 118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~----------------------------------~~~~sp--dg~~~ 156 (396)
T 3c5m_A 118 YTVDEE-----WKGYGTWVANSDCTKLVGIEIL----------------------------------KRDWQP--LTSWE 156 (396)
T ss_dssp EECCTT-----EEEEEEEEECTTSSEEEEEEEE----------------------------------GGGCCC--CCSHH
T ss_pred Eecccc-----cCCCCCEEEeccCCcccccccc----------------------------------ccccCC--CCcce
Confidence 543322 5566666666555544333321 012334 34433
Q ss_pred EEE-----EcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC-CCCEEEE
Q 001321 194 LIA-----YENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS-SGSILAV 267 (1100)
Q Consensus 194 l~~-----~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp-dg~~l~s 267 (1100)
+.+ ..+..|.+||+.+++......+ ...+..+.|. | +|..|+.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~------------------------------~~~~~~~~~s-p~dg~~l~~ 205 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELEVIHQD------------------------------TAWLGHPIYR-PFDDSTVGF 205 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEEEEEEE------------------------------SSCEEEEEEE-TTEEEEEEE
T ss_pred eeeeeccCCCcceEEEEECCCCcEEeeccC------------------------------CcccccceEC-CCCCCEEEE
Confidence 332 2455789999998877655543 5567788885 8 7887777
Q ss_pred EEc
Q 001321 268 GYI 270 (1100)
Q Consensus 268 g~~ 270 (1100)
.+.
T Consensus 206 ~~~ 208 (396)
T 3c5m_A 206 CHE 208 (396)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.44 E-value=1.8e-11 Score=151.99 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=134.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEeC-CCceEEEeCCCCCCEE---------EEEEE--eCCCE-EEEEEC
Q 001321 32 YGIPATASILAFDHIQRLLAIA--TLDGRIKVIGG-DGIEGLLISPSQLPYK---------NLEFL--QNQGF-LISITN 96 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~lLA~g--s~dG~I~vw~~-~~~~~~~~~~h~~~V~---------~l~fs--~d~~~-Lls~s~ 96 (1100)
.|+...+..++++++.-+++.. ..+++..||.. .+.+...+..|...+. ...|+ |||++ |+..+.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 3567789999999887666666 45789999984 4555566667766666 67676 99988 665543
Q ss_pred -CCcEEEEEcC--C-Cceeeeee-----cCCCeEEEEEecCCCEEEEEeCC----------CcEEEEEEecCC----Cee
Q 001321 97 -DNEIQVWSLE--S-RSLACCLK-----WESNITAFSVISGSHFMYIGDEN----------GLMSVIKYDADE----GKL 153 (1100)
Q Consensus 97 -d~~I~vWd~~--s-~~~l~~~~-----~~~~Vt~~~~s~~~~~l~~G~~d----------G~V~Iw~~d~~~----~~l 153 (1100)
+..|.+|++. + +....... +...+.+++|+|++++|++++.+ ..|++|+++... +..
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 4567777766 3 54433333 45678999999999999988765 345555543210 333
Q ss_pred eeeceeec-ccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC--------CEEEEEEcc-CC---EEEEEecCCc
Q 001321 154 FQLPYNIS-ADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN--------ALVILWDVS-EA---QIIFVGGGKD 220 (1100)
Q Consensus 154 ~~~~~~i~-~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d--------g~V~lwdl~-~~---~~~~~~~~~~ 220 (1100)
.. +. .+. ..+.+++|+| +|++|+.++.+ ..|.+||+. ++ ....+..+
T Consensus 180 ~~----l~~~~~------------~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-- 239 (662)
T 3azo_A 180 RE----LSDDAH------------RFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-- 239 (662)
T ss_dssp EE----SSCSCS------------SEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred eE----EEecCC------------CcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC--
Confidence 32 22 222 4577788988 79888877755 379999999 56 44444321
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEe
Q 001321 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWN 278 (1100)
Q Consensus 221 ~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd 278 (1100)
....+.+++|. |||++++++..+|...+|.
T Consensus 240 ---------------------------~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~ 269 (662)
T 3azo_A 240 ---------------------------PEEAIAQAEWA-PDGSLIVATDRTGWWNLHR 269 (662)
T ss_dssp ---------------------------TTBCEEEEEEC-TTSCEEEEECTTSSCEEEE
T ss_pred ---------------------------CCceEcceEEC-CCCeEEEEECCCCCeEEEE
Confidence 04567889985 9999888888888444443
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.43 E-value=7.3e-12 Score=155.55 Aligned_cols=164 Identities=5% Similarity=-0.003 Sum_probs=107.5
Q ss_pred eCCCCCCEEEEEEEeCCCEEEEE--ECCCcEEEEEcC-CCceeeeeecCCCeE---------EEEEe--cCCCE-EEEEe
Q 001321 72 ISPSQLPYKNLEFLQNQGFLISI--TNDNEIQVWSLE-SRSLACCLKWESNIT---------AFSVI--SGSHF-MYIGD 136 (1100)
Q Consensus 72 ~~~h~~~V~~l~fs~d~~~Lls~--s~d~~I~vWd~~-s~~~l~~~~~~~~Vt---------~~~~s--~~~~~-l~~G~ 136 (1100)
...|...|..++|++++.++++. +.++...+|... .+.......+...+. ++.++ |++++ |+.+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 34578899999999886666666 457889999954 444444445555555 56565 99998 77665
Q ss_pred CCCcEEEEEEecC--C-CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC----------CEEE
Q 001321 137 ENGLMSVIKYDAD--E-GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----------ALVI 203 (1100)
Q Consensus 137 ~dG~V~Iw~~d~~--~-~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d----------g~V~ 203 (1100)
.. ...||.++.. . +.... +.... ...+...+.+++|+| +|++|++++.+ ..|.
T Consensus 99 ~~-~~~l~~~~~~~~g~~~~~~----l~~~~-------~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 99 FG-DQRLYAFEPDAPGGAVPRP----LTPVS-------AVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp TT-TCCEEEECTTSTTCCCCEE----CSCCC-------CSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred CC-CCeEEEEcCCCCCCCCCEe----ccCCc-------cCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEE
Confidence 43 3456777764 2 33332 22200 000115688999988 78889888876 5889
Q ss_pred EEEccC------CEEEEEe-cCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC----
Q 001321 204 LWDVSE------AQIIFVG-GGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---- 272 (1100)
Q Consensus 204 lwdl~~------~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG---- 272 (1100)
+||+.+ +....+. .+ ...+.+++| +|||++|+.++.++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~------------------------------~~~~~~~~~-SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRELSDDA------------------------------HRFVTGPRL-SPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEETTSTTTTCGGGSEESSCSC------------------------------SSEECCCEE-CTTSSEEEEEEECTTCCT
T ss_pred EEECCCCccccCCceeEEEecC------------------------------CCcccCceE-CCCCCEEEEEECCCCCCC
Confidence 999988 6554433 22 345666787 49999999887654
Q ss_pred ----cEEEEecC
Q 001321 273 ----DILLWNTS 280 (1100)
Q Consensus 273 ----~I~lWd~~ 280 (1100)
.|.+||+.
T Consensus 214 ~~~~~i~~~d~~ 225 (662)
T 3azo_A 214 WEGTELKTARVT 225 (662)
T ss_dssp TTCEEEEEEEEC
T ss_pred CCCcEEEEEEEC
Confidence 56666664
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.42 E-value=1e-11 Score=140.30 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=141.5
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCceEEEe--CCC-----CCCEEEEEEEeCCCEEEEEECC-----------
Q 001321 37 TASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLI--SPS-----QLPYKNLEFLQNQGFLISITND----------- 97 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~~~~~~--~~h-----~~~V~~l~fs~d~~~Lls~s~d----------- 97 (1100)
.+..++|+|++++++++. .++.|++|+....+.... .++ ...+..++|+|||.+|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 688999999999766554 679999999976655432 233 2347899999999999998865
Q ss_pred -CcEEEEEcCCCc---eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccc-----
Q 001321 98 -NEIQVWSLESRS---LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEK----- 168 (1100)
Q Consensus 98 -~~I~vWd~~s~~---~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~----- 168 (1100)
+.|.+||+.+++ .+....++..+.+++|+|+++ +++++. .|.+|+.. +++.... ++.......
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~--~~~~~~~---~~~~~~~~~~~~~~ 195 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVK--TGKYTVA---LPLRNWNRKGYSAP 195 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTT--TCCEEEE---ECSTTCCCTTBCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCC--CCceecc---ccccccCCccccCc
Confidence 899999999854 334555666799999999999 666543 37777654 3444321 221100000
Q ss_pred ---------------------cCCC------------------------------CCCCCCeEEEEeccCCCCCEEEEEE
Q 001321 169 ---------------------AGFP------------------------------LLSHQPVVGVLPHPNSSGNRVLIAY 197 (1100)
Q Consensus 169 ---------------------~~~~------------------------------~~~~~~V~sv~f~P~~~g~~ll~~~ 197 (1100)
...+ ......+.+++|+|. ++++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-dg~~l~~~- 273 (349)
T 1jmx_B 196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGV- 273 (349)
T ss_dssp BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEE-
T ss_pred cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC-CCCEEEEE-
Confidence 0000 001124567777662 57767777
Q ss_pred cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEE
Q 001321 198 ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1100)
Q Consensus 198 ~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lW 277 (1100)
++.|.+||+.+++....... ...+.+++|. |+|++|++++.++.|.+|
T Consensus 274 -~~~v~~~d~~~~~~~~~~~~------------------------------~~~~~~~~~s-~dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 274 -LNRLAKYDLKQRKLIKAANL------------------------------DHTYYCVAFD-KKGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp -ESEEEEEETTTTEEEEEEEC------------------------------SSCCCEEEEC-SSSSCEEEESBSSEEEEE
T ss_pred -cCeEEEEECccCeEEEEEcC------------------------------CCCccceEEC-CCCCEEEEecCCCeEEEE
Confidence 88999999999987665433 3346688885 999999999899999999
Q ss_pred ecCCC
Q 001321 278 NTSTT 282 (1100)
Q Consensus 278 d~~~~ 282 (1100)
|..++
T Consensus 322 d~~~~ 326 (349)
T 1jmx_B 322 NPDTL 326 (349)
T ss_dssp ETTTT
T ss_pred ecccc
Confidence 99866
No 170
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.40 E-value=1.6e-13 Score=108.81 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=53.3
Q ss_pred CHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhh
Q 001321 1032 TREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTME 1093 (1100)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1100)
.++.++++ .+++.+++.+|++||.||||||+.|++||++|+++|++|+++|++|++|||
T Consensus 5 ~i~~v~~q---v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Kyk 63 (63)
T 1urq_A 5 GIEGVKGA---ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYK 63 (63)
T ss_dssp -CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777777 666779999999999999999999999999999999999999999999997
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.39 E-value=1e-09 Score=131.81 Aligned_cols=203 Identities=11% Similarity=0.101 Sum_probs=139.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC--CCceeeeeecCCC
Q 001321 42 AFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE--SRSLACCLKWESN 119 (1100)
Q Consensus 42 a~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~--s~~~l~~~~~~~~ 119 (1100)
..||.+.++++...++.|.+||....+++...+....+..+.|+|||++|++++.++.|.+||+. +++.+..+.....
T Consensus 162 ~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 162 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred ccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 35666667777777899999999887777665555567799999999999999999999999996 8888887766667
Q ss_pred eEEEEEe----cCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 120 ITAFSVI----SGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 120 Vt~~~~s----~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
...++|+ |+++++++++. +++|.|+| ..+.+..+. ..+.+.........+ ...+..+..+|. ....++
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD--~~t~~~~~~-i~~~~~~~~~~~~~p---~~rva~i~~s~~-~~~~vv 314 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMD--GETLEPKKI-QSTRGMTYDEQEYHP---EPRVAAILASHY-RPEFIV 314 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEE--TTTCCEEEE-EECCEECTTTCCEES---CCCEEEEEECSS-SSEEEE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEE--CCCCcEEEE-EeccccccccccccC---CCceEEEEEcCC-CCEEEE
Confidence 8899999 69999998876 58888876 334444432 111110000000000 125778888663 233344
Q ss_pred EEEcCCEEEEEEccCCEEEE--EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cC
Q 001321 195 IAYENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-ID 271 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~D 271 (1100)
....+|.|.++|....+... .... ........|. |+|+++++++ .+
T Consensus 315 ~~~~~g~v~~vd~~~~~~~~v~~i~~------------------------------~~~~~d~~~~-pdgr~~~va~~~s 363 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNNLKTTEISA------------------------------ERFLHDGGLD-GSHRYFITAANAR 363 (567)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEEC------------------------------CSSEEEEEEC-TTSCEEEEEEGGG
T ss_pred EecCCCeEEEEecCCCccceeeeeec------------------------------cccccCceEC-CCCCEEEEEeCCC
Confidence 55567899999987653222 1111 3345567775 9999987766 57
Q ss_pred CcEEEEecCCC
Q 001321 272 GDILLWNTSTT 282 (1100)
Q Consensus 272 G~I~lWd~~~~ 282 (1100)
+.|.+||..++
T Consensus 364 n~V~ViD~~t~ 374 (567)
T 1qks_A 364 NKLVVIDTKEG 374 (567)
T ss_dssp TEEEEEETTTT
T ss_pred CeEEEEECCCC
Confidence 88999998754
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.39 E-value=1.4e-10 Score=132.30 Aligned_cols=146 Identities=10% Similarity=0.220 Sum_probs=103.5
Q ss_pred CCCEEEEEE------CCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEEC----------CCcEEEEEcCCC
Q 001321 46 IQRLLAIAT------LDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN----------DNEIQVWSLESR 108 (1100)
Q Consensus 46 ~~~lLA~gs------~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~----------d~~I~vWd~~s~ 108 (1100)
+++++.+.. .|+.|++||....+++ ....+..| .++|+||+++|.+++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666654 3689999998655544 33344555 9999999999998873 577999999999
Q ss_pred ceeeeeec-------CCCeEEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeecee-ecccccccccCCCCCCCCC
Q 001321 109 SLACCLKW-------ESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYN-ISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 109 ~~l~~~~~-------~~~Vt~~~~s~~~~~l~~G~~--dG~V~Iw~~d~~~~~l~~~~~~-i~~~~~~~~~~~~~~~~~~ 178 (1100)
+.+..+.. ......++++|++++|+++.. +++|.||+.+. +++. .. ++. ..
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~---~~~i~~--------------~~ 152 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYV---EDVTAA--------------AG 152 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEE---EEEGGG--------------TT
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEE---EEEecC--------------CC
Confidence 88877643 245778999999999999975 57888887664 4443 22 321 22
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEEEEccC-CEEE
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQII 213 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~-~~~~ 213 (1100)
...+.+.|.. ..++++.+.||.+.+|++.. +++.
T Consensus 153 ~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 153 CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEe
Confidence 3335566642 35688899999999999865 4443
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.39 E-value=1e-10 Score=147.11 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=107.4
Q ss_pred CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC-C-----CeEEEEEecCCCEEEEEeCC---------CcE
Q 001321 77 LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE-S-----NITAFSVISGSHFMYIGDEN---------GLM 141 (1100)
Q Consensus 77 ~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~-~-----~Vt~~~~s~~~~~l~~G~~d---------G~V 141 (1100)
.....++|+||+.+|++. |++|.+||+.+++....+... . ....++|+|++++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999888875 999999999999876655322 1 22448999999999998875 444
Q ss_pred EEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec--CC
Q 001321 142 SVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG--GK 219 (1100)
Q Consensus 142 ~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~--~~ 219 (1100)
.+|+ ..++++.+ +..+. ..+...+|+| +|++|+.+ .++.|.+||+.++...++.. +.
T Consensus 95 ~~~d--~~~~~~~~----l~~~~------------~~~~~~~~SP--dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 95 DIYD--LNKRQLIT----EERIP------------NNTQWVTWSP--VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEE--TTTTEECC----SSCCC------------TTEEEEEECS--STTCEEEE-ETTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEE--CCCCcEEE----cccCC------------CcceeeEECC--CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCc
Confidence 4555 44455543 33322 6799999988 78878777 56889999999887554321 10
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc-EEEEecC
Q 001321 220 DLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD-ILLWNTS 280 (1100)
Q Consensus 220 ~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~-I~lWd~~ 280 (1100)
+.... |.+... .. +..-....++.| ||||++|+.+..|.+ +.+|++.
T Consensus 154 ~~~~~--------g~~~~v---~~--ee~~~~~~~~~w-SpDg~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 154 DIIYN--------GITDWV---YE--EEVFSAYSALWW-SPNGTFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp TTEEE--------SBCCHH---HH--HHTSSSSBCEEE-CTTSSEEEEEEEECTTCCEEEEE
T ss_pred cceec--------Cccccc---cc--chhcCCCcceEE-CCCCCEEEEEEEcccCCceEEEE
Confidence 00000 000000 00 000122345778 599999998876655 8888764
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.33 E-value=5.3e-10 Score=126.41 Aligned_cols=110 Identities=9% Similarity=0.066 Sum_probs=79.6
Q ss_pred CEEEEEEEeCCCEEEEEE---------CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCC---CcEEEEE
Q 001321 78 PYKNLEFLQNQGFLISIT---------NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN---GLMSVIK 145 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s---------~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d---G~V~Iw~ 145 (1100)
.+..++| ||.+++.+. .++.|.+||+.+++.... ..+.+++|+|++++|+....+ +...||.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4677777 778877653 256799999998875433 568899999999998877653 5666787
Q ss_pred EecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC--------------------------
Q 001321 146 YDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-------------------------- 199 (1100)
Q Consensus 146 ~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-------------------------- 199 (1100)
++...++..+. .... . +.++.|+| +|++|+.++.+
T Consensus 90 ~~~~~g~~~~l----~~~~------------~-~~~~~wsp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 90 ADLETLSSKKI----LEAK------------N-IRSLEWNE--DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EETTTTEEEEE----EEES------------E-EEEEEECT--TSSEEEEEEECCCC---------CCCC---------C
T ss_pred EECCCCceEEE----EcCC------------C-ccceeECC--CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 77766665532 2111 4 88999988 78878877642
Q ss_pred -CEEEEEEccCCEE
Q 001321 200 -ALVILWDVSEAQI 212 (1100)
Q Consensus 200 -g~V~lwdl~~~~~ 212 (1100)
..|.+||+.+++.
T Consensus 151 ~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 151 KTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEEEEETTTTEE
T ss_pred cceEEEEECCCCeE
Confidence 4678889888876
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.32 E-value=2.9e-09 Score=128.02 Aligned_cols=115 Identities=9% Similarity=0.118 Sum_probs=85.3
Q ss_pred eCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc
Q 001321 86 QNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL 165 (1100)
Q Consensus 86 ~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~ 165 (1100)
+++.++++...+++|.+||..+++++..+.....+..+.++|+++++++++.+|.|.+||+...+.+... +++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~---~i~~G-- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA---EIKIG-- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---EEECC--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE---EEecC--
Confidence 3444556666789999999999999998877777889999999999999999999988887422344432 24321
Q ss_pred ccccCCCCCCCCCeEEEEecc--CCCCCEEEE-EEcCCEEEEEEccCCEEEEEe
Q 001321 166 SEKAGFPLLSHQPVVGVLPHP--NSSGNRVLI-AYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 166 ~~~~~~~~~~~~~V~sv~f~P--~~~g~~ll~-~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
.....++|+| ..+|+++++ .+.++.|.++|..+.+++...
T Consensus 240 -----------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i 282 (567)
T 1qks_A 240 -----------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 282 (567)
T ss_dssp -----------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred -----------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 3467999972 016776665 455689999999998776543
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.24 E-value=2e-09 Score=121.61 Aligned_cols=94 Identities=16% Similarity=-0.001 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCEEEEEE---------CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC-----cEEE
Q 001321 37 TASILAFDHIQRLLAIAT---------LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN-----EIQV 102 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs---------~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~-----~I~v 102 (1100)
.+...++ +|+.||... .++.|++|+..+.+...+ ..+..++|+|||.+|+.++.++ .|.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4566777 898888753 257899999976655444 5688999999999999887542 3888
Q ss_pred EEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC
Q 001321 103 WSLESRSLACCLKWESNITAFSVISGSHFMYIGDE 137 (1100)
Q Consensus 103 Wd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~ 137 (1100)
||+.+++......... +.+++|+|++++|+.+..
T Consensus 90 ~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~ 123 (347)
T 2gop_A 90 ADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGF 123 (347)
T ss_dssp EETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEE
T ss_pred EECCCCceEEEEcCCC-ccceeECCCCCEEEEEEc
Confidence 8999988766665555 999999999999888763
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.24 E-value=4.2e-09 Score=115.50 Aligned_cols=199 Identities=11% Similarity=0.136 Sum_probs=136.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC------CCCCCEEEEEEE-eCCCEEEEEEC-CCcEEEEEc
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS------PSQLPYKNLEFL-QNQGFLISITN-DNEIQVWSL 105 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~------~h~~~V~~l~fs-~d~~~Lls~s~-d~~I~vWd~ 105 (1100)
.-..+.+++++|+++++++.+.++.|++|+.++....... .|...+..++|. +++..+++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 3457899999999999988888999999998765444332 234578999996 56444444433 88999999
Q ss_pred CCCceeeeeec--CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEE
Q 001321 106 ESRSLACCLKW--ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVL 183 (1100)
Q Consensus 106 ~s~~~l~~~~~--~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~ 183 (1100)
.+++.+..+.. ...+.+++++++++++++...++.|.+|+.+ +..... +....+ ...+.+|+
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~~-~~~~~~------------~~~p~~i~ 170 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN---GNVLHK-FGCSKH------------LEFPNGVV 170 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEE-EECTTT------------CSSEEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC---CCEEEE-eCCCCc------------cCCcEEEE
Confidence 56666665532 3568999999999877766678878777633 333321 111111 15689999
Q ss_pred eccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC
Q 001321 184 PHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS 263 (1100)
Q Consensus 184 f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~ 263 (1100)
+.| +|+.+++...++.|.+||.....+. .+... .....+.++++. ++|.
T Consensus 171 ~~~--~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~---------------------------g~~~~p~~i~~d-~~G~ 219 (286)
T 1q7f_A 171 VND--KQEIFISDNRAHCVKVFNYEGQYLR-QIGGE---------------------------GITNYPIGVGIN-SNGE 219 (286)
T ss_dssp ECS--SSEEEEEEGGGTEEEEEETTCCEEE-EESCT---------------------------TTSCSEEEEEEC-TTCC
T ss_pred ECC--CCCEEEEECCCCEEEEEcCCCCEEE-EEccC---------------------------CccCCCcEEEEC-CCCC
Confidence 977 6774555556889999998654333 33210 002457788875 9999
Q ss_pred EEEEEEcCC-cEEEEecC
Q 001321 264 ILAVGYIDG-DILLWNTS 280 (1100)
Q Consensus 264 ~l~sg~~DG-~I~lWd~~ 280 (1100)
.+++...++ .|.+||..
T Consensus 220 l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 220 ILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEEEECSSSCEEEEECTT
T ss_pred EEEEeCCCCEEEEEECCC
Confidence 888887776 99999953
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.21 E-value=1.5e-09 Score=122.01 Aligned_cols=193 Identities=10% Similarity=0.043 Sum_probs=132.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee-e
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL-K 115 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~-~ 115 (1100)
.+.+++|+|++..++....++.+++| ..........+...+..++|++++..+++...++.|.+||..+++..... .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 46778899998888887888999999 33334445556667899999999886677777899999999988776554 4
Q ss_pred cCCCeEEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 116 WESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
....+.+++++++++++++...+ +.|.+|+ ...+.+... +.... ....+.++.+.| +|.
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d--~~~~~~~~~---~~~~~----------~~~~~~~i~~d~--~g~ 147 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT--ENGDNLQDI---IEDLS----------TAYCIDDMVFDS--KGG 147 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC--TTSCSCEEE---ECSSS----------SCCCEEEEEECT--TSC
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe--CCCCEEEEE---EccCc----------cCCcccceEECC--CCC
Confidence 56789999999999877776665 5565554 434443311 11100 115689999977 677
Q ss_pred EEEEEEcC-------CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 192 RVLIAYEN-------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 192 ~ll~~~~d-------g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
++++... +.|..||..++++...... ...+.+++|. |+|+.
T Consensus 148 -l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------------------~~~~~~i~~~-~dg~~ 195 (333)
T 2dg1_A 148 -FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------------------------------ISVANGIALS-TDEKV 195 (333)
T ss_dssp -EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------------------------------ESSEEEEEEC-TTSSE
T ss_pred -EEEEeccccccCCCceEEEEeCCCCEEEEeecC------------------------------CCcccceEEC-CCCCE
Confidence 5555542 4566666665555433221 2346778885 99986
Q ss_pred EEEE-EcCCcEEEEecC
Q 001321 265 LAVG-YIDGDILLWNTS 280 (1100)
Q Consensus 265 l~sg-~~DG~I~lWd~~ 280 (1100)
|+.+ ..++.|.+||..
T Consensus 196 l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 196 LWVTETTANRLHRIALE 212 (333)
T ss_dssp EEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCeEEEEEec
Confidence 6554 557889999875
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.19 E-value=3.5e-09 Score=118.96 Aligned_cols=212 Identities=13% Similarity=0.042 Sum_probs=137.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CeEEEEeCCCceEEEeC--CCCCCEEEEEEEeCC
Q 001321 35 PATASILAFDHIQRLLAIATLD------------------------GRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQ 88 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~d------------------------G~I~vw~~~~~~~~~~~--~h~~~V~~l~fs~d~ 88 (1100)
-+.+.++|++|+++++++...+ +.|.+||....+++... .+-.....++|.++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888877 47999999755554333 344578999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCc-eeeeeec----------CCCeEEEEEec-CCCEEEEEe-CCCcEEEEEEecCCCeeee
Q 001321 89 GFLISITNDNEIQVWSLESRS-LACCLKW----------ESNITAFSVIS-GSHFMYIGD-ENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~-~l~~~~~----------~~~Vt~~~~s~-~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~ 155 (1100)
..+++...++.|.+||..... .+..+.. -.....++++| ++.++++.. .++.|++|+. ++.+..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~---~g~~~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP---SGKFVT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT---TSCEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC---CCCEEE
Confidence 877777778999999987663 3443321 13689999999 566666654 5887777663 244442
Q ss_pred eceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCC
Q 001321 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGD 235 (1100)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 235 (1100)
. +...... ..........+.+|++.|. .+..+++...++.|++||..+++.+..+.. ...
T Consensus 180 ~---~~~~g~~--~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-------~~~------- 239 (329)
T 3fvz_A 180 Q---WGEESSG--SSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKH-------ASF------- 239 (329)
T ss_dssp E---ECEECCS--SSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECC-------TTT-------
T ss_pred E---eccCCCC--CCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEec-------ccc-------
Confidence 2 2211000 0000111245899999772 266555666788999999997877665432 000
Q ss_pred CccccCCCCCCCCCCceEEEEEecC------CCCEEEEEEcCCcEEEEecCCCC
Q 001321 236 STFLEGISEHQPEEKEISALCWASS------SGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 236 ~~~g~~~~~~~~~~~~V~sl~w~sp------dg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
...+.+++|. | +|...++...++.|++|+..+++
T Consensus 240 -------------~~~~~~~~~~-pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 240 -------------GRNVFAISYI-PGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp -------------TTCEEEEEEE-TTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred -------------CCCcceeeec-CCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 3456677765 7 33333333445689999987763
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.18 E-value=6e-09 Score=130.28 Aligned_cols=190 Identities=6% Similarity=0.007 Sum_probs=123.7
Q ss_pred CCCCEEEEEECC-----CeEEEEeCCCc-eEEEe------CCCCCCEEEEEEEeCCCEEEEEECCC-----cEEEEEcCC
Q 001321 45 HIQRLLAIATLD-----GRIKVIGGDGI-EGLLI------SPSQLPYKNLEFLQNQGFLISITNDN-----EIQVWSLES 107 (1100)
Q Consensus 45 p~~~lLA~gs~d-----G~I~vw~~~~~-~~~~~------~~h~~~V~~l~fs~d~~~Lls~s~d~-----~I~vWd~~s 107 (1100)
|+|++++....+ +.|.+.+..+. ..+++ .+|...+..++|||||.+|+.+..++ +|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889988877644 24555554322 22221 23445789999999999998776533 899999999
Q ss_pred CceeeeeecCCCeEEEEEecCCCEEEEEeCCCc----------------EEEEEEecCCCeeeeeceeecccccccccCC
Q 001321 108 RSLACCLKWESNITAFSVISGSHFMYIGDENGL----------------MSVIKYDADEGKLFQLPYNISADALSEKAGF 171 (1100)
Q Consensus 108 ~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~----------------V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~ 171 (1100)
++.+........+..++|+|+++.|+.+..++. |++|++......-.. .+..+.+.
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~------- 232 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEP------- 232 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCT-------
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE-EeccCCCC-------
Confidence 988765433344788999999999998887765 777776542211111 02222122
Q ss_pred CCCCCCCeEEEEeccCCCCCEEEEEEc-----CCEEEEEEccC------C--EEEEEecCCcccccccccCCCCCCCCcc
Q 001321 172 PLLSHQPVVGVLPHPNSSGNRVLIAYE-----NALVILWDVSE------A--QIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 172 ~~~~~~~V~sv~f~P~~~g~~ll~~~~-----dg~V~lwdl~~------~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
..+.++.|+| +|++|+++.. +..|.+||+.+ + ....+..+
T Consensus 233 -----~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~-------------------- 285 (710)
T 2xdw_A 233 -----KWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN-------------------- 285 (710)
T ss_dssp -----TCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS--------------------
T ss_pred -----eEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC--------------------
Confidence 5578999977 7888887775 56899999986 4 34444433
Q ss_pred ccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC----cEEEEecCC
Q 001321 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDG----DILLWNTST 281 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG----~I~lWd~~~ 281 (1100)
...+.. .|. |+|..|+..+.++ .|.+||+.+
T Consensus 286 ----------~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~~ 320 (710)
T 2xdw_A 286 ----------FEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTD 320 (710)
T ss_dssp ----------SSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTS
T ss_pred ----------CCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 223333 344 7888887766533 477777654
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.16 E-value=5.2e-09 Score=114.78 Aligned_cols=199 Identities=9% Similarity=0.091 Sum_probs=136.0
Q ss_pred CCCeEEEEE-cCCCCEEEEEEC-CCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee
Q 001321 35 PATASILAF-DHIQRLLAIATL-DGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1100)
Q Consensus 35 ~~~v~~la~-sp~~~lLA~gs~-dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l 111 (1100)
...+..+++ +++++++++... ++.|++|+.++...... ..+...+..++|.+++..+++...++.|.+||.. ++.+
T Consensus 76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 154 (286)
T 1q7f_A 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVL 154 (286)
T ss_dssp BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEE
Confidence 356889999 577777666644 89999999766544333 3444578999999998877776678899999965 4555
Q ss_pred eeee---cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 112 CCLK---WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 112 ~~~~---~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
..+. ....+.+++++++++++++...++.|++|+.+ +.... .+..+. ....+.+|++.|
T Consensus 155 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~---~~~~~g----------~~~~p~~i~~d~-- 216 (286)
T 1q7f_A 155 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---GQYLR---QIGGEG----------ITNYPIGVGINS-- 216 (286)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT---CCEEE---EESCTT----------TSCSEEEEEECT--
T ss_pred EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC---CCEEE---EEccCC----------ccCCCcEEEECC--
Confidence 5553 23468999999999876666778888888753 33321 132110 115688999977
Q ss_pred CCCEEEEEEcCC-EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 189 SGNRVLIAYENA-LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 189 ~g~~ll~~~~dg-~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
+|..+++...++ .|.+||.....+..+..+ .. ...+.++++. |+|..+++
T Consensus 217 ~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~--------~~--------------------~~~~~~i~~~-~~g~l~vs 267 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFTQDGQLISALESK--------VK--------------------HAQCFDVALM-DDGSVVLA 267 (286)
T ss_dssp TCCEEEEECSSSCEEEEECTTSCEEEEEEES--------SC--------------------CSCEEEEEEE-TTTEEEEE
T ss_pred CCCEEEEeCCCCEEEEEECCCCCEEEEEccc--------CC--------------------CCcceeEEEC-CCCcEEEE
Confidence 687555555665 999999755444333222 00 2346788876 99986666
Q ss_pred EEcCCcEEEEecCCC
Q 001321 268 GYIDGDILLWNTSTT 282 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1100)
+.|+.|++|+....
T Consensus 268 -~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 -SKDYRLYIYRYVQL 281 (286)
T ss_dssp -ETTTEEEEEECSCC
T ss_pred -CCCCeEEEEEcccc
Confidence 67999999998543
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.15 E-value=1.4e-09 Score=135.57 Aligned_cols=157 Identities=8% Similarity=-0.027 Sum_probs=102.9
Q ss_pred CCCCEEEEEECCC-----eEEEEeCCCc--eEEEe-----CCCCCCEEEEEEEeCCCEEEEE-----ECCCcEEEEEcCC
Q 001321 45 HIQRLLAIATLDG-----RIKVIGGDGI--EGLLI-----SPSQLPYKNLEFLQNQGFLISI-----TNDNEIQVWSLES 107 (1100)
Q Consensus 45 p~~~lLA~gs~dG-----~I~vw~~~~~--~~~~~-----~~h~~~V~~l~fs~d~~~Lls~-----s~d~~I~vWd~~s 107 (1100)
|+|++++....++ .|.+.+..+. ++++- .+|...+..++|||||.+|+-. +.+.+|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7899988877653 3444444332 23321 2456679999999999998843 3346899999999
Q ss_pred Ccee-eeeecCCCeEEEEEecCCCEEEEEeCCCc-------------EEEEEEecCCC--eeeeeceeecccccccccCC
Q 001321 108 RSLA-CCLKWESNITAFSVISGSHFMYIGDENGL-------------MSVIKYDADEG--KLFQLPYNISADALSEKAGF 171 (1100)
Q Consensus 108 ~~~l-~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~-------------V~Iw~~d~~~~--~l~~~~~~i~~~~~~~~~~~ 171 (1100)
++.+ ...........++|+|+++.|+.++.+.. |++|++..... .+. +..+.+.
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv---~~~~~~~------- 226 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV---HERTGDP------- 226 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE---ECCCCCT-------
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE---EecCCCC-------
Confidence 9876 22211222378999999999999887765 87777664321 122 2233222
Q ss_pred CCCCCCCeEEEEeccCCCCCEEEEEEcCC----EEEEEEccCCEEEEEecC
Q 001321 172 PLLSHQPVVGVLPHPNSSGNRVLIAYENA----LVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 172 ~~~~~~~V~sv~f~P~~~g~~ll~~~~dg----~V~lwdl~~~~~~~~~~~ 218 (1100)
..+.++.|+| +|++|+++..++ .|.+||..++....+..+
T Consensus 227 -----~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 227 -----TTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp -----TCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred -----EEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 5688999988 788788777665 666776655555544433
No 183
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.13 E-value=5.6e-09 Score=117.30 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=139.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc--eEEEe---------CCCCCCEEEEEEEe-CCCEEEEEE-CCCcE
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGI--EGLLI---------SPSQLPYKNLEFLQ-NQGFLISIT-NDNEI 100 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~--~~~~~---------~~h~~~V~~l~fs~-d~~~Lls~s-~d~~I 100 (1100)
.-..+..++++|+++++++.+.+++|++|+.++. .+... ..+-.....|+|+| ++..+++-+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 3447889999999999998888999999999765 23322 23444689999999 666666665 58999
Q ss_pred EEEEcCCCceeeeeecC-----------CCeEEEEEecCCCEEE-EEeCCCcEEEEEEecCCCeeeeeceeecccccccc
Q 001321 101 QVWSLESRSLACCLKWE-----------SNITAFSVISGSHFMY-IGDENGLMSVIKYDADEGKLFQLPYNISADALSEK 168 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~~~~-----------~~Vt~~~~s~~~~~l~-~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~ 168 (1100)
.+|| ..++++..+... .....++++|++..++ +...++.|++|+.+ ++++... +..+.+.
T Consensus 169 ~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--~G~~~~~-~~~~~~~---- 240 (329)
T 3fvz_A 169 VQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD--TKEFVRE-IKHASFG---- 240 (329)
T ss_dssp EEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEE-ECCTTTT----
T ss_pred EEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC--CCcEEEE-EeccccC----
Confidence 9999 566666665321 2389999999954444 55567878777655 3555532 2222222
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEE-------EEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccC
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLI-------AYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEG 241 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~-------~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~ 241 (1100)
..+.+++|+| +..+.. .+.+..|++||+.+++++..++...
T Consensus 241 --------~~~~~~~~~p---g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~--------------------- 288 (329)
T 3fvz_A 241 --------RNVFAISYIP---GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR--------------------- 288 (329)
T ss_dssp --------TCEEEEEEET---TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS---------------------
T ss_pred --------CCcceeeecC---CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------------------
Confidence 5688999988 321222 1223488999999998877764200
Q ss_pred CCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 242 ISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 242 ~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.....+.++++. |+|..+++...++.|++|++..
T Consensus 289 -----~~~~~p~~ia~~-~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 -----KHFDMPHDIVAS-EDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -----SCCSSEEEEEEC-TTSEEEEEESSSCCEEEEEEEE
T ss_pred -----CccCCeeEEEEC-CCCCEEEEECCCCEEEEEeCCc
Confidence 014457889974 9998888888899999999853
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.12 E-value=1e-08 Score=113.02 Aligned_cols=194 Identities=10% Similarity=-0.009 Sum_probs=137.0
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 35 PATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 35 ~~~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
..-+.+++|+|+++ ++++++.++.|++|+.++. ......+...+..++|+++|.++++...++.|.+||..+++....
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 34577899999998 8899999999999999776 444455667899999999988777666678999999988876543
Q ss_pred eec-----CCCeEEEEEecCCCEEEE----EeC-----------CCcEEEEEEecCCCeeeeeceeecccccccccCCCC
Q 001321 114 LKW-----ESNITAFSVISGSHFMYI----GDE-----------NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPL 173 (1100)
Q Consensus 114 ~~~-----~~~Vt~~~~s~~~~~l~~----G~~-----------dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~ 173 (1100)
... ...+..++++|+++++++ |.. .+.-.||.++.. +++.. +..+.
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~----~~~~~--------- 171 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA----PIRDR--------- 171 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE----EECCC---------
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEE----eecCC---------
Confidence 311 134678999999987776 331 112367888865 44432 22221
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc-CCEE---EEEecCCcccccccccCCCCCCCCccccCCCCCCCCC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-EAQI---IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~-~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~ 249 (1100)
..+.+++|+| +++.+++...++.|.+||+. ++.+ ...+ . .. .
T Consensus 172 ---~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~--------~~--------------------~ 217 (296)
T 3e5z_A 172 ---VKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T--------VE--------------------P 217 (296)
T ss_dssp ---SSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C--------CS--------------------S
T ss_pred ---CCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e--------CC--------------------C
Confidence 5678999977 78867556667899999997 4544 2222 1 00 3
Q ss_pred CceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 250 KEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 250 ~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
..+.++++. ++|...++. ++.|.+||..
T Consensus 218 ~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 218 GKTDGLRVD-AGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SCCCSEEEB-TTSCEEEEE--TTEEEEECTT
T ss_pred CCCCeEEEC-CCCCEEEEc--CCeEEEECCC
Confidence 345567875 999855555 8889999975
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.10 E-value=3.8e-07 Score=99.98 Aligned_cols=195 Identities=10% Similarity=0.006 Sum_probs=131.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
...+.+++++++++++++...++.|.+|+..+...... ..+...+..+++.+++...++...++.|..||.. ++....
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 45789999999999877655579999999883322222 2345679999999998877776668889999987 333221
Q ss_pred -e-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 114 -L-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 114 -~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
. .....+.++++++++.+.++...++.|.+|+ . ++++.. +..+... ..+.++++.| +|.
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d--~-~g~~~~--~~~~~~~------------~~~~~i~~~~--~g~ 153 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRIT--D-DGKIRE--YELPNKG------------SYPSFITLGS--DNA 153 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--T-TCCEEE--EECSSTT------------CCEEEEEECT--TSC
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEEC--C-CCCEEE--ecCCCCC------------CCCceEEEcC--CCC
Confidence 1 1345789999999988777766777665554 3 344432 2233221 5688999966 677
Q ss_pred EEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcC
Q 001321 192 RVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYID 271 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~D 271 (1100)
.+++...++.|..||. +++....... .....+.++++. ++|...++...+
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~~~~~~----------------------------~~~~~~~~i~~~-~~g~l~v~~~~~ 203 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDITEFKIP----------------------------TPASGPVGITKG-NDDALWFVEIIG 203 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECS----------------------------STTCCEEEEEEC-TTSSEEEEETTT
T ss_pred EEEEeCCCCEEEEEcC-CCcEEEeeCC----------------------------CCCCcceeEEEC-CCCCEEEEccCC
Confidence 4444445688999998 6665443211 003346778865 888866666667
Q ss_pred CcEEEEec
Q 001321 272 GDILLWNT 279 (1100)
Q Consensus 272 G~I~lWd~ 279 (1100)
+.|..||.
T Consensus 204 ~~i~~~~~ 211 (299)
T 2z2n_A 204 NKIGRITT 211 (299)
T ss_dssp TEEEEECT
T ss_pred ceEEEECC
Confidence 78888876
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.09 E-value=3.2e-08 Score=111.02 Aligned_cols=207 Identities=13% Similarity=0.110 Sum_probs=141.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECC----CcEEEEEcCC
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITND----NEIQVWSLES 107 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d----~~I~vWd~~s 107 (1100)
+....+.+++|+|+++++++++.++.|++|+.++.+.... ..+...+..++|++++.++++...+ +.|.+||..+
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~ 121 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 121 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC
Confidence 3445678999999999888999999999999976554433 3566789999999998777766655 6899999998
Q ss_pred Cceeeee---ecCCCeEEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 108 RSLACCL---KWESNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 108 ~~~l~~~---~~~~~Vt~~~~s~~~~~l~~G~~----dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
++....+ .....+.+++++|+++++++... ++...||.++...+++... .... ..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~------------~~~~ 185 (333)
T 2dg1_A 122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI----IQNI------------SVAN 185 (333)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE----EEEE------------SSEE
T ss_pred CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe----ecCC------------Cccc
Confidence 8765333 23356999999999986665543 1245778888765555431 1111 4578
Q ss_pred EEEeccCCCCCEEEEEE-cCCEEEEEEccC-CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 181 GVLPHPNSSGNRVLIAY-ENALVILWDVSE-AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~-~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
+++|+| ++++++++. .++.|.+||+.+ +.....+... ... ... ....+..+++.
T Consensus 186 ~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~-~~~--~~~-------------------~~~~~~~i~~d 241 (333)
T 2dg1_A 186 GIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGAT-IPY--YFT-------------------GHEGPDSCCID 241 (333)
T ss_dssp EEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE-EEE--ECC-------------------SSSEEEEEEEB
T ss_pred ceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccce-EEE--ecC-------------------CCCCCCceEEC
Confidence 899977 677565554 578999999964 2211111000 000 000 02356678875
Q ss_pred cCCCCEEEEEEcCCcEEEEecC
Q 001321 259 SSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
++|..+++...++.|.+||..
T Consensus 242 -~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 242 -SDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp -TTCCEEEEEETTTEEEEECTT
T ss_pred -CCCCEEEEEcCCCEEEEECCC
Confidence 999987877788999999974
No 187
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.07 E-value=2.7e-09 Score=120.92 Aligned_cols=178 Identities=15% Similarity=0.040 Sum_probs=127.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-----------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIE-----------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-----------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
.++.||+++..+++|+|+.+ .++||+.+... .....++.. |++|+| |+.+|+++ .++.|.+||+
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 48999999999999999987 46669763222 223335666 999999 77888888 7899999999
Q ss_pred CCCceeeee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 106 ESRSLACCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 106 ~s~~~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
.+....... .+...|.++.+.+. .+++++.||.|.+|++.. +.... + . ..|.|++|
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~--~~~~~----~---~------------~~Vs~v~W 170 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT--KSTKQ----L---A------------QNVTSFDV 170 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT--CCEEE----E---E------------ESEEEEEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC--Ccccc----c---c------------CCceEEEE
Confidence 876544333 55667777766654 388999999999999874 22221 1 1 56999999
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEE--EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG 262 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg 262 (1100)
+| .| +++|+.||.+++|+.....+ +..... + ...++ ...+...|.+++|. +++
T Consensus 171 Sp--kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~---------------P-p~~~~----~~~~~~~V~sI~wl-~~~ 225 (388)
T 1xip_A 171 TN--SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSL---------------P-SELEE----LPVEEYSPLSVTIL-SPQ 225 (388)
T ss_dssp CS--SE--EEEEETTSCEEEEEEETTEEEEEEEECC---------------C-HHHHT----SCTTTSEEEEEEES-SSS
T ss_pred cC--Cc--eEEEEcCCcEEEEcCCCccccccceecC---------------C-ccccc----ccCCCeeEEEEEEe-cCC
Confidence 88 56 78999999999999998875 333311 0 00000 00126789999997 888
Q ss_pred CEEEE
Q 001321 263 SILAV 267 (1100)
Q Consensus 263 ~~l~s 267 (1100)
.++++
T Consensus 226 ~flv~ 230 (388)
T 1xip_A 226 DFLAV 230 (388)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 87764
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.06 E-value=2e-09 Score=123.86 Aligned_cols=195 Identities=9% Similarity=-0.053 Sum_probs=130.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-CCCCCEEE-------------------EEEEeCCCEEEEE-----
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKN-------------------LEFLQNQGFLISI----- 94 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-~h~~~V~~-------------------l~fs~d~~~Lls~----- 94 (1100)
.++|+|+++.||.++.++.|++|+..+.+...+. .+...... +.|+|++.+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 3789999999999999999999999765544332 23332222 2445665555443
Q ss_pred ECCCcEEEEEcCCCceeeeeecCCCeEEEEEec-CCCEEEEEeCCCc----EEEEEEecCCCeeeeeceeeccccccccc
Q 001321 95 TNDNEIQVWSLESRSLACCLKWESNITAFSVIS-GSHFMYIGDENGL----MSVIKYDADEGKLFQLPYNISADALSEKA 169 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~-~~~~l~~G~~dG~----V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~ 169 (1100)
..+..|.+||+.+++..........+..+.|+| ++.+++....++. .+||.++.+.+.... +..+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~----- 235 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHA----- 235 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCC-----
T ss_pred CCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccC-----
Confidence 346689999999988776667778899999999 7887776655433 355666654444332 11110
Q ss_pred CCCCCCCCCeEEEEeccCCCCCEEEEEEcC-----CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCC
Q 001321 170 GFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-----ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 170 ~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-----g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
....+..+.|+| +|++|+.++.+ +.|.+||+.+++.......
T Consensus 236 -----~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-------------------------- 282 (396)
T 3c5m_A 236 -----EGESCTHEFWIP--DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-------------------------- 282 (396)
T ss_dssp -----TTEEEEEEEECT--TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--------------------------
T ss_pred -----CCccccceEECC--CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--------------------------
Confidence 013478899988 67767666544 4599999998876544322
Q ss_pred CCCCCCceEEEEEecC-CCCEEEEEE----------------cCCcEEEEecCCCC
Q 001321 245 HQPEEKEISALCWASS-SGSILAVGY----------------IDGDILLWNTSTTA 283 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~sp-dg~~l~sg~----------------~DG~I~lWd~~~~~ 283 (1100)
.. .. +.|. | +|+++++++ .++.|.+||+.++.
T Consensus 283 ----~~-~~-~~~s-~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 283 ----PP-CS-HLMS-NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp ----CS-EE-EEEE-CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred ----CC-CC-CCcc-CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 11 22 6775 8 999888765 34789999987663
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.06 E-value=4.2e-07 Score=99.61 Aligned_cols=155 Identities=10% Similarity=0.082 Sum_probs=103.0
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~ 152 (1100)
+...+.++++.++|...++...++.|.+||.. ++..... .....+.++++++++.+.++...++.|..|+ .. +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~--~~-g~ 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT--KK-GI 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC--TT-SC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC--CC-Cc
Confidence 44679999999998877766667899999998 6544322 2346799999999998777766678665554 33 33
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCC
Q 001321 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (1100)
+.. +.++... ..+.++++.| +|..+++...++.|..||. +++.......
T Consensus 89 ~~~--~~~~~~~------------~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-------------- 137 (299)
T 2z2n_A 89 IKE--YTLPNPD------------SAPYGITEGP--NGDIWFTEMNGNRIGRITD-DGKIREYELP-------------- 137 (299)
T ss_dssp EEE--EECSSTT------------CCEEEEEECT--TSCEEEEETTTTEEEEECT-TCCEEEEECS--------------
T ss_pred EEE--EeCCCcC------------CCceeeEECC--CCCEEEEecCCceEEEECC-CCCEEEecCC--------------
Confidence 332 3333222 5689999976 6774444445788899998 5554433211
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
.....+.++++. ++|...++...++.|..||.
T Consensus 138 --------------~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 138 --------------NKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp --------------STTCCEEEEEEC-TTSCEEEEETTTTEEEEECT
T ss_pred --------------CCCCCCceEEEc-CCCCEEEEeCCCCEEEEEcC
Confidence 003456778865 88877666666677888876
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.02 E-value=1e-07 Score=107.45 Aligned_cols=154 Identities=9% Similarity=-0.090 Sum_probs=104.9
Q ss_pred EEEEeCCCEEEEEEC-----CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEe----------CCCcEEEEEE
Q 001321 82 LEFLQNQGFLISITN-----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGD----------ENGLMSVIKY 146 (1100)
Q Consensus 82 l~fs~d~~~Lls~s~-----d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~----------~dG~V~Iw~~ 146 (1100)
....|++.++...+. ++.|.+.|..+++++..+....... ++++|+++++|++. .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 455789888888876 5799999999999998886544444 99999999999886 3566777765
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc--CCEEEEEEccCCEEEEEecCCccccc
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVGGGKDLQLK 224 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~--dg~V~lwdl~~~~~~~~~~~~~~~~~ 224 (1100)
.+ .+.... ..++... .. ........++|+| +|++++++.. ++.|.++|+.+++++....-
T Consensus 117 ~t--~~v~~~-I~v~~g~---r~----~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------ 178 (386)
T 3sjl_D 117 VT--LLPTAD-IELPDAP---RF----LVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------ 178 (386)
T ss_dssp TT--CCEEEE-EEETTCC---CC----CBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred CC--CeEEEE-EECCCcc---cc----ccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------
Confidence 43 444432 2222100 00 0002456788977 7998888864 68999999999998765421
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 225 ~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.+ . ... .....+.+++.+.||.+.+.+..+
T Consensus 179 ------------------------~g-~-~~~-~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 179 ------------------------PD-C-YHI-FPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp ------------------------CS-E-EEE-EEEETTEEEEEETTSCEEEEECCS
T ss_pred ------------------------CC-c-cee-ecCCCceeEEECCCCCEEEEECCC
Confidence 11 1 122 223446778889999999988764
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.02 E-value=1e-08 Score=128.11 Aligned_cols=202 Identities=9% Similarity=0.059 Sum_probs=135.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCc--------
Q 001321 33 GIPATASILAFDHIQRLLAIATLDG-----RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE-------- 99 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG-----~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~-------- 99 (1100)
|+...+..++|||||++||.+..++ .|++||+.+.+..........+..++|+|||..|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 3344688999999999999887754 899999987766543222234678999999999999987765
Q ss_pred --------EEEEEcCCCce----eeee-ecCCCeEEEEEecCCCEEEEEeC-----CCcEEEEEEecCC----C--eeee
Q 001321 100 --------IQVWSLESRSL----ACCL-KWESNITAFSVISGSHFMYIGDE-----NGLMSVIKYDADE----G--KLFQ 155 (1100)
Q Consensus 100 --------I~vWd~~s~~~----l~~~-~~~~~Vt~~~~s~~~~~l~~G~~-----dG~V~Iw~~d~~~----~--~l~~ 155 (1100)
|.+|++.+++. +... .++..+..++|+|++++|+++.. +..|++|+++... + .+..
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 99999988762 2121 13445889999999999988775 4556666655310 2 2221
Q ss_pred eceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC----CEEEEEEccCCE---EEEEecCCccccccccc
Q 001321 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEAQ---IIFVGGGKDLQLKDGVV 228 (1100)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d----g~V~lwdl~~~~---~~~~~~~~~~~~~~~l~ 228 (1100)
+..+. ..+.. .|+| +|.+|++.+.. +.|.+||+.++. ...+..+.
T Consensus 282 ----l~~~~------------~~~~~-~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------- 333 (710)
T 2xdw_A 282 ----LIDNF------------EGEYD-YVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--------- 333 (710)
T ss_dssp ----EECSS------------SSCEE-EEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---------
T ss_pred ----eeCCC------------CcEEE-EEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC---------
Confidence 33222 33433 3656 57777777654 368999998763 23333330
Q ss_pred CCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc--EEEEecCCC
Q 001321 229 DSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD--ILLWNTSTT 282 (1100)
Q Consensus 229 ~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~--I~lWd~~~~ 282 (1100)
....+.+++|. +++..+++...||. |.+|++.++
T Consensus 334 -------------------~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 334 -------------------EKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp -------------------SSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTC
T ss_pred -------------------CCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCC
Confidence 02367788886 78888888888885 455565444
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.96 E-value=5.6e-08 Score=107.10 Aligned_cols=198 Identities=11% Similarity=0.064 Sum_probs=130.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe-CCC----CCCEEEEEEEeCCCEEEEEEC------------
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPS----QLPYKNLEFLQNQGFLISITN------------ 96 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h----~~~V~~l~fs~d~~~Lls~s~------------ 96 (1100)
....+.+++++|+++++++...++.|.+|+....+.... ... ...+..++|.++|.++++-+.
T Consensus 67 ~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 67 PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccc
Confidence 345688999999999887776679999999844333322 111 124678999999987776321
Q ss_pred -----CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee-eeeceeecccccccccC
Q 001321 97 -----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-FQLPYNISADALSEKAG 170 (1100)
Q Consensus 97 -----d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l-~~~~~~i~~~~~~~~~~ 170 (1100)
.+.|..+|.. +++............++++|+++++++...++.|.+|+++. .+.+ ... ..+...
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-~g~~~~~~-~~~~~~------- 216 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-RGETEYQG-VHFTVE------- 216 (296)
T ss_dssp CCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-SSCEEEEE-EEECCS-------
T ss_pred cccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-CCcCcCCC-eEeeCC-------
Confidence 2345555554 55444445556788999999999887777788888888762 3444 211 112111
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
...+.++++.| +|+ ++++. ++.|.+||.....+..+..+ ..
T Consensus 217 -----~~~p~~i~~d~--~G~-l~v~~-~~~v~~~~~~g~~~~~~~~~------------------------------~~ 257 (296)
T 3e5z_A 217 -----PGKTDGLRVDA--GGL-IWASA-GDGVHVLTPDGDELGRVLTP------------------------------QT 257 (296)
T ss_dssp -----SSCCCSEEEBT--TSC-EEEEE-TTEEEEECTTSCEEEEEECS------------------------------SC
T ss_pred -----CCCCCeEEECC--CCC-EEEEc-CCeEEEECCCCCEEEEEECC------------------------------CC
Confidence 14566788966 787 66666 88899999874443333322 44
Q ss_pred ceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 251 EISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 251 ~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+++++|.+|++..|++++.++ |.-++..+.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 888888568999999988764 444455443
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.96 E-value=6.7e-08 Score=121.34 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=117.6
Q ss_pred CCCCEEEEEECCCe---EEEEe--CC---Cc--eEE-----EeCCCCCCEEEEEEEeCCCEEEEEECC-----CcEEEEE
Q 001321 45 HIQRLLAIATLDGR---IKVIG--GD---GI--EGL-----LISPSQLPYKNLEFLQNQGFLISITND-----NEIQVWS 104 (1100)
Q Consensus 45 p~~~lLA~gs~dG~---I~vw~--~~---~~--~~~-----~~~~h~~~V~~l~fs~d~~~Lls~s~d-----~~I~vWd 104 (1100)
|+|++++....++. -.||- .. +. +++ +..+|...+..++|||||.+|+.+..+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 89999988776532 45554 33 22 222 122344578999999999999877653 3599999
Q ss_pred cCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCc--------------EEEEEEecCCC--eeeeeceeecccccccc
Q 001321 105 LESRSLACCLKWESNITAFSVISGSHFMYIGDENGL--------------MSVIKYDADEG--KLFQLPYNISADALSEK 168 (1100)
Q Consensus 105 ~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~--------------V~Iw~~d~~~~--~l~~~~~~i~~~~~~~~ 168 (1100)
+.+++.+........+..++|+|+ +.|+.+..++. |++|++.+... .+. +..+.+
T Consensus 196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv---~~~~~~----- 266 (741)
T 1yr2_A 196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV---FATPEL----- 266 (741)
T ss_dssp TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE---ECCTTC-----
T ss_pred CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE---eccCCC-----
Confidence 999988765333333468899999 98888876554 55555432211 111 212211
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC-----EEEEEEccCC--E-EEEEecCCcccccccccCCCCCCCCcccc
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEA--Q-IIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg-----~V~lwdl~~~--~-~~~~~~~~~~~~~~~l~~~~~g~~~~~g~ 240 (1100)
...+.++.|+| +|++|++...++ .|.+||+.++ + ...+..+
T Consensus 267 -------~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---------------------- 315 (741)
T 1yr2_A 267 -------PKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---------------------- 315 (741)
T ss_dssp -------TTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS----------------------
T ss_pred -------CeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC----------------------
Confidence 13588999977 788888877654 8999999887 4 4444433
Q ss_pred CCCCCCCCCCceEEEEEecCCCCEEEEEEcCC----cEEEEecC
Q 001321 241 GISEHQPEEKEISALCWASSSGSILAVGYIDG----DILLWNTS 280 (1100)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG----~I~lWd~~ 280 (1100)
...+.... . |+|..|+..+.++ .|.+||+.
T Consensus 316 --------~~~~~~~~-~-~dg~~l~~~s~~~~~~~~l~~~d~~ 349 (741)
T 1yr2_A 316 --------LKAQWDFV-D-GVGDQLWFVSGDGAPLKKIVRVDLS 349 (741)
T ss_dssp --------SSSCEEEE-E-EETTEEEEEECTTCTTCEEEEEECS
T ss_pred --------CCceEEEE-e-ccCCEEEEEECCCCCCCEEEEEeCC
Confidence 22233333 3 7888888877643 37777764
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.95 E-value=5.5e-08 Score=105.28 Aligned_cols=196 Identities=10% Similarity=0.036 Sum_probs=129.1
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 37 TASILAFDHIQRLLA-IATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA-~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
.+.++++++++++++ +.+.++.|.+|+......... ..+...+..++|.+++..+++.. ++.|.+||..++......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 788999999999777 447789999999865443332 33335678899999987555544 889999998877554332
Q ss_pred -ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 -~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.....+.++++++++++.++...++.|.+| +........ ..... ...+.+|++.| +|+.+
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~--~~~~~~~~~---~~~~~------------~~~p~~i~~~~--~g~l~ 164 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKL--AAGSKTQTV---LPFTG------------LNDPDGVAVDN--SGNVY 164 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEE--CTTCCSCEE---CCCCS------------CCSCCCEEECT--TCCEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEE--ECCCceeEe---ecccc------------CCCceeEEEeC--CCCEE
Confidence 222568999999999866666667877666 332222111 01110 14567889976 67744
Q ss_pred EEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc
Q 001321 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~ 273 (1100)
++...++.|.+||..+......... ....+.++++. ++|..+++...++.
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~~~-----------------------------~~~~p~~i~~d-~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLPFT-----------------------------DITAPWGIAVD-EAGTVYVTEHNTNQ 214 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECCCS-----------------------------SCCSEEEEEEC-TTCCEEEEETTTSC
T ss_pred EEECCCCEEEEEecCCCceEeeccc-----------------------------CCCCceEEEEC-CCCCEEEEECCCCc
Confidence 4445578999999887654332110 02457788875 89977777777889
Q ss_pred EEEEecCCC
Q 001321 274 ILLWNTSTT 282 (1100)
Q Consensus 274 I~lWd~~~~ 282 (1100)
|.+|+..+.
T Consensus 215 v~~~~~~~~ 223 (270)
T 1rwi_B 215 VVKLLAGST 223 (270)
T ss_dssp EEEECTTCS
T ss_pred EEEEcCCCC
Confidence 999998643
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.95 E-value=1.7e-06 Score=98.49 Aligned_cols=150 Identities=7% Similarity=-0.173 Sum_probs=96.3
Q ss_pred EEeCCCEEEEEEC--CC---cEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC----------CCcEEEEEEec
Q 001321 84 FLQNQGFLISITN--DN---EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDA 148 (1100)
Q Consensus 84 fs~d~~~Lls~s~--d~---~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~----------dG~V~Iw~~d~ 148 (1100)
..+++.++...+. .+ +|.+||..+++++..+.....- .++++|+++++++... ++.|.+++..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~- 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV- 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-
Confidence 3466666666654 22 8899999999988777544434 9999999999999863 5678777664
Q ss_pred CCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc--CCEEEEEEccCCEEEEE-ecCCcccccc
Q 001321 149 DEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFV-GGGKDLQLKD 225 (1100)
Q Consensus 149 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~--dg~V~lwdl~~~~~~~~-~~~~~~~~~~ 225 (1100)
+.+.... ..+++..... .......++|+| +|++|+++.. +..|.++| .+++++.. ...
T Consensus 106 -t~~~~~~-i~~~~~~~~~-------~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~------- 166 (373)
T 2mad_H 106 -TFLPIAD-IELPDAPRFD-------VGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS------- 166 (373)
T ss_pred -CCcEEEE-EECCCccccc-------cCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-------
Confidence 3333321 1122000000 002345889987 7988888874 47899999 98887654 321
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC-CEEEEEEcCCcEEEEecCCC
Q 001321 226 GVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG-SILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 226 ~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg-~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.+. +... |++ ..+++.+.||.+.+||. ++
T Consensus 167 -----------------------~~~---~~~~-~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 167 -----------------------PTC---YHIH-PGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred -----------------------Cce---EEEE-eCCCceEEEEcCCCCEEEEEC-CC
Confidence 111 1222 444 45667788999999998 55
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.95 E-value=2.5e-08 Score=108.86 Aligned_cols=189 Identities=9% Similarity=0.044 Sum_probs=134.4
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEE-EeCCCC-CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC--CCeE
Q 001321 46 IQRLLAIATLDGRIKVIGGDGIEGL-LISPSQ-LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNIT 121 (1100)
Q Consensus 46 ~~~lLA~gs~dG~I~vw~~~~~~~~-~~~~h~-~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~--~~Vt 121 (1100)
.+++|++++.|+.|++||....+.+ ....+. ..+.++.++|+|..|+ +.++.|..||. +++++..+... ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 3678999999999999999444444 444444 4789999999998888 45788999999 88888888654 4788
Q ss_pred EEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCC
Q 001321 122 AFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 122 ~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg 200 (1100)
++.+.++++++++... ++ +|+.++.+ +++... +.+.... . .....+..+.+.| +|+++++.+.++
T Consensus 81 ~~~~~~dG~~lv~~~~~~~--~v~~vd~~-Gk~l~~-~~~~~~~-------~-~~~~~~~~v~~~~--~G~~lv~~~~~~ 146 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPS--TILEVNMK-GEVLSK-TEFETGI-------E-RPHAQFRQINKNK--KGNYLVPLFATS 146 (276)
T ss_dssp EEEECTTSCEEEEEESTTE--EEEEECTT-SCEEEE-EEECCSC-------S-SGGGSCSCCEECT--TSCEEEEETTTT
T ss_pred ccEECCCCCEEEEecCCCC--EEEEEeCC-CCEEEE-EeccCCC-------C-cccccccCceECC--CCCEEEEecCCC
Confidence 9999999999998877 55 55667653 454422 3332110 0 0002233444544 788888888899
Q ss_pred EEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 201 LVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 201 ~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.|..||.. ++.+..+.. ...+.++... ++|..++++..++.|..+|..
T Consensus 147 ~v~~~d~~-G~~~w~~~~------------------------------~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKL------------------------------SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EEEEECTT-SCEEEEEEC------------------------------SSCCCEEEEC-TTSCEEEECBTTSEEEEECTT
T ss_pred EEEEECCC-CCEEEEEEC------------------------------CCCccceeEc-CCCCEEEEeCCCCeEEEEeCc
Confidence 99999998 777665543 2223345544 899999988888899999988
Q ss_pred CCC
Q 001321 281 TTA 283 (1100)
Q Consensus 281 ~~~ 283 (1100)
+++
T Consensus 195 tG~ 197 (276)
T 3no2_A 195 SNR 197 (276)
T ss_dssp TCC
T ss_pred CCc
Confidence 773
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.94 E-value=5.1e-07 Score=99.99 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=133.8
Q ss_pred CCeEEEEEcCCCCEEEE-------EECCCeEEEEeCCCceEEEeCC-----CCCCEEEEEEEeCCCEEEEEECCCcEEEE
Q 001321 36 ATASILAFDHIQRLLAI-------ATLDGRIKVIGGDGIEGLLISP-----SQLPYKNLEFLQNQGFLISITNDNEIQVW 103 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~-------gs~dG~I~vw~~~~~~~~~~~~-----h~~~V~~l~fs~d~~~Lls~s~d~~I~vW 103 (1100)
..+.+++|+++++++++ ++.++.|.+|+....+...... +...+..+++.++++.|..++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 35689999999998888 6888999999975544433222 45678999999994455555556689999
Q ss_pred EcCCCceeee-eec-----CCCeEEEEEecCCCEEEEEeCCC-------------cEEEEEEecCCCeeeeeceeecccc
Q 001321 104 SLESRSLACC-LKW-----ESNITAFSVISGSHFMYIGDENG-------------LMSVIKYDADEGKLFQLPYNISADA 164 (1100)
Q Consensus 104 d~~s~~~l~~-~~~-----~~~Vt~~~~s~~~~~l~~G~~dG-------------~V~Iw~~d~~~~~l~~~~~~i~~~~ 164 (1100)
|.. ++.... ... ...+.++++++++++.++...++ ...||.++.+ +++.. +....
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~----~~~~~ 171 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ----VDTAF 171 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE----EEEEE
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE----eccCC
Confidence 998 766543 211 13488999999998766655441 2466777765 44432 11111
Q ss_pred cccccCCCCCCCCCeEEEEec----cCCCCCEEEEEE-cCCEEEEEEcc-CCEEEEEecCCcccccccccCCCCCCCCcc
Q 001321 165 LSEKAGFPLLSHQPVVGVLPH----PNSSGNRVLIAY-ENALVILWDVS-EAQIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 165 ~~~~~~~~~~~~~~V~sv~f~----P~~~g~~ll~~~-~dg~V~lwdl~-~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
..+..++++ | +++.++++. .++.|.+||+. ++.+....... .+.
T Consensus 172 ------------~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~------~~~---------- 221 (314)
T 1pjx_A 172 ------------QFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG------HIP---------- 221 (314)
T ss_dssp ------------SSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE------ECC----------
T ss_pred ------------CCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCccccceEEE------ECC----------
Confidence 446788887 6 675566654 57899999987 45432111000 000
Q ss_pred ccCCCCCCCCC-CceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 239 LEGISEHQPEE-KEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 239 g~~~~~~~~~~-~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
... ..+..+++. ++|...++...++.|..||..++
T Consensus 222 --------~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 222 --------GTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp --------CCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCB
T ss_pred --------CCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCC
Confidence 002 456778875 99998888778899999998755
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.94 E-value=1.9e-06 Score=94.44 Aligned_cols=193 Identities=8% Similarity=-0.002 Sum_probs=128.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEE-Ee-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGL-LI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~-~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~ 112 (1100)
...+.++++++++++.++...++.|.+|+.. .+.. .. ..+...+..+++.+++...++...++.|..||.. ++...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 3578999999999988777678999999987 3332 22 2334678999999998777766667889999988 55432
Q ss_pred ee-e-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 113 CL-K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 113 ~~-~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.. . ....+.++++++++.+.++...++.|. .++.+ +++.. +.++... ..+.++++.| +|
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~--~~~~~-g~~~~--~~~~~~~------------~~~~~i~~d~--~g 157 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIG--KLTAD-GTIYE--YDLPNKG------------SYPAFITLGS--DN 157 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEE--EECTT-SCEEE--EECSSTT------------CCEEEEEECT--TS
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCCeEE--EECCC-CCEEE--ccCCCCC------------CCceeEEECC--CC
Confidence 22 1 235789999999988766666677564 45544 44442 3333221 5688999966 67
Q ss_pred CEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 191 NRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 191 ~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
+ ++++. .++.|..||. +++...+... .....+.++++. ++|...++..
T Consensus 158 ~-l~v~~~~~~~i~~~~~-~g~~~~~~~~----------------------------~~~~~~~~i~~d-~~g~l~v~~~ 206 (300)
T 2qc5_A 158 A-LWFTENQNNSIGRITN-TGKLEEYPLP----------------------------TNAAAPVGITSG-NDGALWFVEI 206 (300)
T ss_dssp S-EEEEETTTTEEEEECT-TCCEEEEECS----------------------------STTCCEEEEEEC-TTSSEEEEET
T ss_pred C-EEEEecCCCeEEEECC-CCcEEEeeCC----------------------------CCCCCcceEEEC-CCCCEEEEcc
Confidence 7 55554 4678889988 5554432210 003356777764 7887666555
Q ss_pred cCCcEEEEec
Q 001321 270 IDGDILLWNT 279 (1100)
Q Consensus 270 ~DG~I~lWd~ 279 (1100)
..+.|..|+.
T Consensus 207 ~~~~i~~~~~ 216 (300)
T 2qc5_A 207 MGNKIGRITT 216 (300)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEEcC
Confidence 5667877775
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.90 E-value=2.3e-08 Score=124.71 Aligned_cols=197 Identities=9% Similarity=-0.043 Sum_probs=133.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----ECCCeEEEEeCCCceEEEeCCCCCCE--EEEEEEeCCCEEEEEECCCc------
Q 001321 33 GIPATASILAFDHIQRLLAIA-----TLDGRIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISITNDNE------ 99 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~g-----s~dG~I~vw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~Lls~s~d~~------ 99 (1100)
|+...+..++|||||++||.+ +++..|++||+.+.+.+. ..+-..+ ..++|+|||..|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 344568899999999999954 444689999997766541 1122222 68999999999999998776
Q ss_pred -------EEEEEcCCCc----eeeee-ecCCCeEEEEEecCCCEEEEEeCCC--cEEEEEEecCCCeeeeeceeeccccc
Q 001321 100 -------IQVWSLESRS----LACCL-KWESNITAFSVISGSHFMYIGDENG--LMSVIKYDADEGKLFQLPYNISADAL 165 (1100)
Q Consensus 100 -------I~vWd~~s~~----~l~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG--~V~Iw~~d~~~~~l~~~~~~i~~~~~ 165 (1100)
|.+|++.++. ++... .+...+.++.++|++++++++..++ ...||.++...+.+.. +..+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~----l~~~~- 271 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL----LVKGV- 271 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE----EEECS-
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE----eecCC-
Confidence 9999999876 22222 2335789999999999988877654 5566766654444433 22222
Q ss_pred ccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc----CCEEEEEEccCCEE---EEEecCCcccccccccCCCCCCCCcc
Q 001321 166 SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEAQI---IFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 166 ~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~----dg~V~lwdl~~~~~---~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
..+....+ | +|. +++.+. ++.|.+||+.++.. ..+..+
T Consensus 272 -----------~~~~~~~~-~--~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------------------- 316 (695)
T 2bkl_A 272 -----------GAKYEVHA-W--KDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE-------------------- 316 (695)
T ss_dssp -----------SCCEEEEE-E--TTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC--------------------
T ss_pred -----------CceEEEEe-c--CCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecC--------------------
Confidence 34555556 3 355 555444 57899999987642 333322
Q ss_pred ccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.....+.+++|. ++..+++...||..++|.+.
T Consensus 317 --------~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 317 --------DSSASLLSVSIV--GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp --------CSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEE
T ss_pred --------CCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 003357778875 67788888999999988764
No 200
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.89 E-value=4.8e-07 Score=101.40 Aligned_cols=195 Identities=8% Similarity=-0.033 Sum_probs=133.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceee
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLAC 112 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~ 112 (1100)
+...+..++++. +++.++...++.|.+||....+.+...+.......++|++++ +|..++ .++.|.+||..++++..
T Consensus 42 lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 42 LGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred cCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEE
Confidence 345567788853 455555556799999999876665444555678999999997 565555 78999999999999887
Q ss_pred eeecCC------CeEEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 113 CLKWES------NITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 113 ~~~~~~------~Vt~~~~s~~~~~l~~G~~--dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
.+.... ....+++ ++..+++++. ++.|.+++.. ++++... ++.. ..+..+.+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~--t~~~~~~---i~~g-------------~~p~~i~~ 179 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTE--TDKVVDE---LTIG-------------IQPTSLVM 179 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETT--TTEEEEE---EECS-------------SCBCCCEE
T ss_pred EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECC--CCeEEEE---EEcC-------------CCccceEE
Confidence 775444 5667777 4667777763 7777666544 4555532 3211 23456778
Q ss_pred ccCCCCCEEEEEEcC----------CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 185 HPNSSGNRVLIAYEN----------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~d----------g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
.| +|++++++..+ +.|.+||..++++...... + . ......
T Consensus 180 ~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---------~---~----------------g~~p~~ 229 (328)
T 3dsm_A 180 DK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---------K---L----------------GDWPSE 229 (328)
T ss_dssp CT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---------C---T----------------TCCCEE
T ss_pred cC--CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec---------C---C----------------CCCcee
Confidence 66 67744444443 7899999999987654321 0 0 124678
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 255 LCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 255 l~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
++|. |++++++++.. .|.+||..+++
T Consensus 230 la~~-~d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 230 VQLN-GTRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EEEC-TTSCEEEEESS--SEEEEETTCSS
T ss_pred EEEe-cCCCEEEEEcc--EEEEEECCCCc
Confidence 8875 99999988754 89999998764
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.87 E-value=3.7e-06 Score=92.03 Aligned_cols=155 Identities=8% Similarity=0.013 Sum_probs=100.7
Q ss_pred CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee--ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe
Q 001321 75 SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK 152 (1100)
Q Consensus 75 h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~ 152 (1100)
....+..+++.++|...++...++.|.+||.. ++..... .....+.++++++++.+.++...++.| +.++.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v--~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKI--GKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE--EEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeE--EEECCC-CC
Confidence 34578899999998777766678999999988 6554322 122578999999998866666557756 445544 44
Q ss_pred eeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCC
Q 001321 153 LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (1100)
... +.++... ..+.++++.| +|..+++...++.|..||.. ++....... .
T Consensus 94 ~~~--~~~~~~~------------~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~--------~----- 143 (300)
T 2qc5_A 94 FTE--YPLPQPD------------SGPYGITEGL--NGDIWFTQLNGDRIGKLTAD-GTIYEYDLP--------N----- 143 (300)
T ss_dssp EEE--EECSSTT------------CCEEEEEECS--TTCEEEEETTTTEEEEECTT-SCEEEEECS--------S-----
T ss_pred eEE--ecCCCCC------------CCCccceECC--CCCEEEEccCCCeEEEECCC-CCEEEccCC--------C-----
Confidence 432 3333222 5688999966 67744444447888899987 554433210 0
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
....+.++++. ++|...++...++.|..||.
T Consensus 144 ---------------~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 144 ---------------KGSYPAFITLG-SDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp ---------------TTCCEEEEEEC-TTSSEEEEETTTTEEEEECT
T ss_pred ---------------CCCCceeEEEC-CCCCEEEEecCCCeEEEECC
Confidence 03456777865 88885555555677777765
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.82 E-value=1.1e-07 Score=102.80 Aligned_cols=197 Identities=8% Similarity=0.025 Sum_probs=133.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
..+.+++++++++++++.. ++.|.+|+.++....... .....+..+++.++|...++...++.|.+||..+.......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence 4678899999999665554 899999998776544333 33357899999999886666667889999987665443322
Q ss_pred -ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 115 -KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 115 -~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
.....+.++++++++++.++...++.|.+|+.+ ....... .... ...+.+|++.| +|..+
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~--~~~~~~~---~~~~------------~~~p~~i~~d~--~g~l~ 206 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE--SNNQVVL---PFTD------------ITAPWGIAVDE--AGTVY 206 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT--TCCEEEC---CCSS------------CCSEEEEEECT--TCCEE
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC--CCceEee---cccC------------CCCceEEEECC--CCCEE
Confidence 222467899999999855555567777666544 2332210 1111 15688999976 67644
Q ss_pred EEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCc
Q 001321 194 LIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGD 273 (1100)
Q Consensus 194 l~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~ 273 (1100)
++...++.|.+||..+......... ....+.++++. ++|..+++...++.
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~~~~~-----------------------------~~~~p~~i~~~-~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTVLPFT-----------------------------GLNTPLAVAVD-SDRTVYVADRGNDR 256 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEECCCC-----------------------------SCSCEEEEEEC-TTCCEEEEEGGGTE
T ss_pred EEECCCCcEEEEcCCCCcceeeccC-----------------------------CCCCceeEEEC-CCCCEEEEECCCCE
Confidence 4445577899999876543221100 02457888875 99998888888999
Q ss_pred EEEEecCCC
Q 001321 274 ILLWNTSTT 282 (1100)
Q Consensus 274 I~lWd~~~~ 282 (1100)
|++++....
T Consensus 257 v~~~~~~~~ 265 (270)
T 1rwi_B 257 VVKLTSLEH 265 (270)
T ss_dssp EEEECCCGG
T ss_pred EEEEcCCCc
Confidence 999998644
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.80 E-value=1.5e-06 Score=97.94 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=107.0
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEeCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEE----------CCCcEEEEE
Q 001321 41 LAFDHIQRLLAIATL-----DGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISIT----------NDNEIQVWS 104 (1100)
Q Consensus 41 la~sp~~~lLA~gs~-----dG~I~vw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s----------~d~~I~vWd 104 (1100)
.+..|+++.+.+... ++.|.++|....+++-..+ ...| .++++|||++|..++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 456799999999887 6899999998777664433 3335 499999999887776 367899999
Q ss_pred cCCCceeeeeecCC--------CeEEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCC
Q 001321 105 LESRSLACCLKWES--------NITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 105 ~~s~~~l~~~~~~~--------~Vt~~~~s~~~~~l~~G~~--dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
..+.+.+..+.... ....++++|++++++++.. ++.|.|+|.. ++++... ++-
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~--t~~vv~t---I~v------------ 178 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE--GKAFKRM---LDV------------ 178 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT--TTEEEEE---EEC------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC--CCcEEEE---EEC------------
Confidence 99999988874432 4678999999999999974 5777666544 4666643 331
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC-CEE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE-AQI 212 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~-~~~ 212 (1100)
.... ..+ |. ...++++.+.||.+.+.++.+ +++
T Consensus 179 --~g~~-~~~-P~-g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 179 --PDCY-HIF-PT-APDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp --CSEE-EEE-EE-ETTEEEEEETTSCEEEEECCSSSCC
T ss_pred --CCcc-eee-cC-CCceeEEECCCCCEEEEECCCCCeE
Confidence 1111 122 43 234578889999988889876 555
No 204
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.79 E-value=0.00072 Score=85.26 Aligned_cols=203 Identities=11% Similarity=0.104 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe--CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~--~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
|.++..++++.+.+ |+.++-|..|+....+.... ..+...|.++...+++. |..++.++-|..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 88899998887655 78765688898755544322 23456799998888865 4445545559999998876543321
Q ss_pred c--------CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 116 W--------ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 116 ~--------~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
. ...|.++..++++.+ .+|+.+| |.++ +...+.+.. +...... . ..-....|.++...
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~~--~~~~~~~~~--~~~~~~~---~---~~l~~~~i~~i~~D-- 318 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRL-WIGTFND-LNIY--HEGTDSFAS--YSSNPVE---N---GSLSQRSVRSIFMD-- 318 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCE-EEEESSC-EEEE--ETTTTEEEE--ECCCTTS---T---TSCSSSCEEEEEEC--
T ss_pred CCCCccccCCCeEEEEEEcCCCCE-EEEeCCh-hheE--cCCCCeEEE--EecCCCC---C---CCCCCCcEEEEEEe--
Confidence 1 246999999987764 4455556 5554 444455543 1111000 0 00112679999884
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 188 SSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 188 ~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
.+|. |.+|..++-|..|+..++....+... .. . .......|.+++.. ++|. |-.
T Consensus 319 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-------------~~-~---------~~l~~~~V~~i~~d-~~g~-lWi 372 (795)
T 4a2l_A 319 SQGG-MWLGTYFGGLNYYHPIRNRFKNIRNI-------------PY-K---------NSLSDNVVSCIVED-KDKN-LWI 372 (795)
T ss_dssp TTSC-EEEEESSSCEEEECGGGGSSEEECCC-------------TT-S---------SSCSCSSEEEEEEC-TTSC-EEE
T ss_pred CCcC-EEEEECCCCeEEeCCCcccceEEcCC-------------CC-C---------CCCCCCeeEEEEEC-CCCC-EEE
Confidence 4787 88898877778898876654332211 00 0 00115678999864 7776 666
Q ss_pred EEcCCcEEEEecCCC
Q 001321 268 GYIDGDILLWNTSTT 282 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~ 282 (1100)
|..++-|..|+..++
T Consensus 373 Gt~~~Gl~~~~~~~~ 387 (795)
T 4a2l_A 373 GTNDGGLNLYNPITQ 387 (795)
T ss_dssp EESSSCEEEECTTTC
T ss_pred EECCCCeEEEcCCCC
Confidence 777777999987654
No 205
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.79 E-value=0.00043 Score=87.34 Aligned_cols=198 Identities=15% Similarity=0.153 Sum_probs=118.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCC----CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQL----PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA 111 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~----~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l 111 (1100)
..|.++..++++.+. +|+.+| +..||....+......... .|.++...+++...+ ++. +-|..||..+++..
T Consensus 88 n~I~~i~~d~~g~lW-igT~~G-l~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi-~t~-~gl~~~~~~~~~~~ 163 (795)
T 4a2l_A 88 DISRIVKTDSQGRVW-IGTRDG-LSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLI-STP-EGLIMFDIKESKFI 163 (795)
T ss_dssp SCEEEEEECTTSCEE-EEESSC-EEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEE-EET-TEEEEEETTTTEEE
T ss_pred cceeEEEECCCCCEE-EEeCCc-hheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEE-EEC-CceEEEECCCCEEE
Confidence 468999999998865 577765 7899986555443322211 288898888865444 443 56999998877654
Q ss_pred eeee-c-CCC-eEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 112 CCLK-W-ESN-ITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 112 ~~~~-~-~~~-Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.... . ... |.++..++++. +.+|..++.|.. ++...+++... .... ....|.++...+
T Consensus 164 ~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~--~~~~~~~~~~~--~~~~------------~~~~i~~i~~d~-- 224 (795)
T 4a2l_A 164 DDSFSTAMHKTIASTLYRQGDQ-IYIGTSTDGLYT--YSITQKTFEKV--IPIL------------GTKQIQAILQQS-- 224 (795)
T ss_dssp CSSSCHHHHTCCEEEEEEETTE-EEEEESSSCEEE--EETTTCCEEEC--C----------------CCCEEEEEEEE--
T ss_pred eccCCCCCCcceEEEEECCCCC-EEEEECCCCEEE--EeCCCCeEEEe--cCCC------------CCCeeEEEEEcC--
Confidence 3211 1 123 88898888775 445666533544 44444444421 0000 115688888744
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
++. +.++..++-+..||..+++....... ...+. ......|.+++.. ++|. |..|
T Consensus 225 ~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~d-~~g~-lWig 279 (795)
T 4a2l_A 225 PTR-IWVATEGAGLFLINPKTKEIKNYLHS-------------PSNPK---------SISSNYIRSLAMD-SQNR-LWIG 279 (795)
T ss_dssp TTE-EEEEEBSSCEEEEETTTTEEEEECCC-------------TTCTT---------SCSCSBEEEEEEC-TTSC-EEEE
T ss_pred CCC-EEEEECCCCeEEEeCCCCeEEEeecC-------------CCCcc---------ccCCCeEEEEEEc-CCCC-EEEE
Confidence 565 88887654468899888776544211 00000 0015678898864 7777 5555
Q ss_pred EcCCcEEEEecCCC
Q 001321 269 YIDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~~DG~I~lWd~~~~ 282 (1100)
..+| |.+||..++
T Consensus 280 t~~G-l~~~~~~~~ 292 (795)
T 4a2l_A 280 TFND-LNIYHEGTD 292 (795)
T ss_dssp ESSC-EEEEETTTT
T ss_pred eCCh-hheEcCCCC
Confidence 5554 888987654
No 206
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=0.0012 Score=83.17 Aligned_cols=207 Identities=10% Similarity=0.064 Sum_probs=123.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-C-------CCCCEEEEEEEe--CCCEEEEEECCCcEEEEEc
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-P-------SQLPYKNLEFLQ--NQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-~-------h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd~ 105 (1100)
..|.++..++++..|-+|+.++-+..|+.......... . ....|.++.... ++ .|..++.++-|..+|.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence 35899999999984567888867999998765544331 1 113688888777 64 4555664667999999
Q ss_pred CCCceeeeee------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCe
Q 001321 106 ESRSLACCLK------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 106 ~s~~~l~~~~------~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
.+++...... ....|.++..++++.+ .+|..++-+ +.++...+++.. |...... .... ....|
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-wigt~~~Gl--~~~~~~~~~~~~--~~~~~~~---~~~l---~~~~i 213 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDGKL-YIGHVEGGL--SILSLNDKSVKH--FVHDPQN---PNSL---PGNDV 213 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETTEE-EEEETTTEE--EEEETTTTEEEE--ECC--------------CCSSE
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCCCE-EEEecCCCe--EEEcCCCCceEe--eecCCCC---cccC---CCCce
Confidence 8876543321 1245888888877654 456666335 445554555442 2111000 0000 11568
Q ss_pred EEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEec
Q 001321 180 VGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWAS 259 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~s 259 (1100)
.+|...+ +|. |.+|..+| +.+||..+++...+... ...+. ......|.+++..
T Consensus 214 ~~i~~d~--~g~-lwigt~~G-l~~~d~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~d- 266 (781)
T 3v9f_A 214 RCIYKDT--NGN-IWIGTSKG-LALFNANTETFTNFHNN-------------PGNIH---------GALSSYIFSIKQL- 266 (781)
T ss_dssp EEEEECT--TCC-EEEEETTE-EEEEETTTTEEEC---------------------------------CCCCEEEEEEC-
T ss_pred eEEEEcC--CCC-EEEEeCCc-HheECCCCCcEEEEEcC-------------CCccc---------cccCceEEEEEEC-
Confidence 8888843 676 88888774 68899887765433211 00000 0015678888854
Q ss_pred CCCCEEEEEEcCCcEEEEecCCC
Q 001321 260 SSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 260 pdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
++|. |..|...+-|.++|..+.
T Consensus 267 ~~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 267 KDNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp TTSE-EEEEESSSCEEEEETTCC
T ss_pred CCCC-EEEEeCCCCeEEECCCCC
Confidence 6665 666766456888888765
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.78 E-value=1.3e-06 Score=99.41 Aligned_cols=204 Identities=11% Similarity=-0.048 Sum_probs=125.9
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEeCCCceEEEeCCC--------CCCEEEEEEEeCCCEEEEEEC--CCc
Q 001321 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLISPS--------QLPYKNLEFLQNQGFLISITN--DNE 99 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs----------~dG~I~vw~~~~~~~~~~~~h--------~~~V~~l~fs~d~~~Lls~s~--d~~ 99 (1100)
.++|+||+++|.++. .++.|.+||....+.+....- ...-..++|+|||++|+.++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999986 367899999976555432211 122358999999999998874 578
Q ss_pred EEEEEcCCCceeee-eecCCCeEEEEEecCCC-EEEEEeCCCcEEEEEEecCCCeeee----------------ec----
Q 001321 100 IQVWSLESRSLACC-LKWESNITAFSVISGSH-FMYIGDENGLMSVIKYDADEGKLFQ----------------LP---- 157 (1100)
Q Consensus 100 I~vWd~~s~~~l~~-~~~~~~Vt~~~~s~~~~-~l~~G~~dG~V~Iw~~d~~~~~l~~----------------~~---- 157 (1100)
|.++| .+++++.. +..++. +.+.|.+. .+++.+.+|.+.+++. . ++... .+
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEe
Confidence 99999 99998877 654432 33334332 2333344555544443 1 11110 00
Q ss_pred --------------eeecc--cc--cccccC-------CCCCCCCCeEEEEeccCCCCCEEEEEEc----------CCEE
Q 001321 158 --------------YNISA--DA--LSEKAG-------FPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALV 202 (1100)
Q Consensus 158 --------------~~i~~--~~--~~~~~~-------~~~~~~~~V~sv~f~P~~~g~~ll~~~~----------dg~V 202 (1100)
+.+.. .. ....+. .....+.....+.++| ++++++++.. ++.|
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~--d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK--SSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC--CCCEEEEEeccCCcccccCCCCeE
Confidence 00000 00 000000 0000113344477877 6777887764 3579
Q ss_pred EEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEE-cCCcEEEEecC
Q 001321 203 ILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTS 280 (1100)
Q Consensus 203 ~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~-~DG~I~lWd~~ 280 (1100)
.++|..+.+++..... .....++.|. |||+ .++++. .++.|.+||..
T Consensus 301 ~VID~~t~~vv~~i~~------------------------------g~~p~~i~~s-~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL------------------------------GHDVDAISVA-QDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEECCCCEEEEEEEC------------------------------CCCcCeEEEC-CCCCeEEEEEcCCCCeEEEEECC
Confidence 9999999988665422 3346778875 9999 777776 58999999998
Q ss_pred CCC
Q 001321 281 TTA 283 (1100)
Q Consensus 281 ~~~ 283 (1100)
+++
T Consensus 350 t~~ 352 (373)
T 2mad_H 350 AGD 352 (373)
T ss_pred CCC
Confidence 774
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=2.1e-07 Score=107.63 Aligned_cols=216 Identities=12% Similarity=-0.003 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC--cEEEEEcCCCceeeee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCL 114 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~--~I~vWd~~s~~~l~~~ 114 (1100)
.+..|+++|+++++++...+++|++|+.+...+........... ++|++++.+|++++.++ .|.+||..++.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 57889999999988888888999999998655543332222223 99999999999998765 7999998876554333
Q ss_pred ----e-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 115 ----K-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 115 ----~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
. ....+.+++++|+...|++...++.|+.|+.+ .+.... +.-.... ......+...++|+|. +
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~--~~~~~~--~~~~~~~-------g~~~~~P~~~ia~~p~-~ 278 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK--TQEVTL--IKQLELS-------GSLGTNPGPYLIYYFV-D 278 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT--TCCEEE--EEECCCC-------SCCCCSSCCEEEEETT-T
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC--CCCEEE--Eeccccc-------CCCCCCccccEEEeCC-C
Confidence 2 34568899999977788888888866555544 333321 1000000 0000011238999884 3
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
+.++++-..++.|..|+.... .....++.. ..+. ..|. .....-.....+++. ++|..+++-.
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~----------~~g~--~dg~---~~~~~~~~P~gia~d-~dG~lyvad~ 341 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGE-CEWFCGSAT----------QKTV--QDGL---REEALFAQPNGMTVD-EDGNFYIVDG 341 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCC-EEEEEECTT----------CCSC--BCEE---GGGCBCSSEEEEEEC-TTCCEEEEET
T ss_pred CEEEEEeCCCCEEEEEecCCC-EEEEEeCCC----------CCCc--CCCc---ccccEeCCCeEEEEe-CCCCEEEEeC
Confidence 554444455778999988755 444444310 0000 0110 000012346789975 9999777766
Q ss_pred -cCCcEEEEecCCC
Q 001321 270 -IDGDILLWNTSTT 282 (1100)
Q Consensus 270 -~DG~I~lWd~~~~ 282 (1100)
.++.|+.|+..++
T Consensus 342 ~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 342 FKGYCLRKLDILDG 355 (409)
T ss_dssp TTTCEEEEEETTTT
T ss_pred CCCCEEEEEECCCC
Confidence 7889999997655
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.74 E-value=1.6e-06 Score=95.42 Aligned_cols=196 Identities=11% Similarity=0.128 Sum_probs=128.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCC-----CCCCEEEEEEEeCCCEEEEEECC--------
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-----SQLPYKNLEFLQNQGFLISITND-------- 97 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~-----h~~~V~~l~fs~d~~~Lls~s~d-------- 97 (1100)
.+..+..+.+++++|++++++ ++ ++.|.+|+.+..+...... ....+..+++.++|.++++....
T Consensus 49 ~~~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~ 126 (297)
T 3g4e_A 49 RVTMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLE 126 (297)
T ss_dssp EEECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCC
T ss_pred EEeCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccccc
Confidence 344577899999999999555 45 6789999986554432221 12357899999998866654322
Q ss_pred -CcEEEEEcCC-CceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeee--ceeecccccccccCCC
Q 001321 98 -NEIQVWSLES-RSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQL--PYNISADALSEKAGFP 172 (1100)
Q Consensus 98 -~~I~vWd~~s-~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~--~~~i~~~~~~~~~~~~ 172 (1100)
..-.||.+.. ++.......-.....++|+|++++|++.. .++.|.+|+++..++.+... -+.++...
T Consensus 127 ~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~-------- 198 (297)
T 3g4e_A 127 RHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE-------- 198 (297)
T ss_dssp TTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG--------
T ss_pred CCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC--------
Confidence 3345666543 33333333335578999999999887665 46778888876555655321 01222111
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCce
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEI 252 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V 252 (1100)
..+.++++.+ +|...++.+..+.|..||..+++++..... + ...+
T Consensus 199 ----~~p~g~~~d~--~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---------p--------------------~~~~ 243 (297)
T 3g4e_A 199 ----QIPDGMCIDA--EGKLWVACYNGGRVIRLDPVTGKRLQTVKL---------P--------------------VDKT 243 (297)
T ss_dssp ----CEEEEEEEBT--TSCEEEEEETTTEEEEECTTTCCEEEEEEC---------S--------------------SSBE
T ss_pred ----CCCCeeEECC--CCCEEEEEcCCCEEEEEcCCCceEEEEEEC---------C--------------------CCCc
Confidence 4578889955 788566666778899999998876654421 1 4578
Q ss_pred EEEEEecCCCCEEEEEEcC
Q 001321 253 SALCWASSSGSILAVGYID 271 (1100)
Q Consensus 253 ~sl~w~spdg~~l~sg~~D 271 (1100)
++++|..|+++.|++.+..
T Consensus 244 t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEESGGGCEEEEEEBC
T ss_pred eEEEEeCCCCCEEEEEcCC
Confidence 9999865888877666543
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.73 E-value=3.5e-06 Score=92.75 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=130.5
Q ss_pred eEEEEEcCC-CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 38 ASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 38 v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
.-..+|+|+ +.++++...++.|+.|+.+..+... ......+.+++|+++|.++++ . ++.|.+||..++++......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence 457899995 5677777778999999997655432 234567999999999885554 3 67899999998876544322
Q ss_pred C-----CCeEEEEEecCCCEEEEEeC---------CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 117 E-----SNITAFSVISGSHFMYIGDE---------NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 117 ~-----~~Vt~~~~s~~~~~l~~G~~---------dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
. ..+..++++|++++.++... .....||.++.+ +++.. +.... .....+
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~----~~~~~------------~~pngi 154 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK----YFDQV------------DISNGL 154 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE----EEEEE------------SBEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE----Eeecc------------ccccce
Confidence 1 34788999999985554322 234577888864 33332 11111 446889
Q ss_pred EeccCCCCCEEEEE-EcCCEEEEEEc--cCCEEEE--EecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 183 LPHPNSSGNRVLIA-YENALVILWDV--SEAQIIF--VGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~-~~dg~V~lwdl--~~~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
+|+| +++.++++ ..++.|.+||+ .++.+.. .+.. +. .....+..+++
T Consensus 155 ~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~--------~~------------------~~~~~p~g~~~ 206 (297)
T 3g4e_A 155 DWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK--------LE------------------KEEQIPDGMCI 206 (297)
T ss_dssp EECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE--------CC------------------GGGCEEEEEEE
T ss_pred EEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE--------CC------------------CCCCCCCeeEE
Confidence 9987 67756554 45688999997 4554321 1100 00 00345677886
Q ss_pred ecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 258 ASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
. ++|...++...++.|..||..++
T Consensus 207 d-~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 207 D-AEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp B-TTSCEEEEEETTTEEEEECTTTC
T ss_pred C-CCCCEEEEEcCCCEEEEEcCCCc
Confidence 5 99987777777888999998766
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.73 E-value=1.1e-07 Score=107.63 Aligned_cols=148 Identities=14% Similarity=0.219 Sum_probs=106.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc
Q 001321 31 HYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS 109 (1100)
Q Consensus 31 ~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~ 109 (1100)
...++. |+.++| ++++|+++ .+|.|++|+.... +......|+.+|..+.+.+.. +++++.||.|.+||+..+.
T Consensus 84 ~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~ 157 (388)
T 1xip_A 84 EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS 157 (388)
T ss_dssp EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC
T ss_pred EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc
Confidence 445788 999999 99999999 7899999998433 334455677889988887763 8889999999999999887
Q ss_pred eeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc-cccccCCCCCCCCCeEEEEeccCC
Q 001321 110 LACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 110 ~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
... +...|+|++|+|.+ +++|..||+|++|+.+.. .+... ..++.-. +.+ ...+...|.+|.|.+
T Consensus 158 ~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~--~~~~k-~~I~~Pp~~~~----~~~~~~~V~sI~wl~-- 223 (388)
T 1xip_A 158 TKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG--EMEKQ-FEFSLPSELEE----LPVEEYSPLSVTILS-- 223 (388)
T ss_dssp EEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETT--EEEEE-EEECCCHHHHT----SCTTTSEEEEEEESS--
T ss_pred ccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc--ccccc-ceecCCccccc----ccCCCeeEEEEEEec--
Confidence 653 34579999999999 788999999999987742 22100 1132100 000 001236799999966
Q ss_pred CCCEEEEEEcC
Q 001321 189 SGNRVLIAYEN 199 (1100)
Q Consensus 189 ~g~~ll~~~~d 199 (1100)
++. ++++|..
T Consensus 224 ~~~-flv~y~~ 233 (388)
T 1xip_A 224 PQD-FLAVFGN 233 (388)
T ss_dssp SSE-EEEEEEC
T ss_pred CCe-EEEEEcC
Confidence 565 5555543
No 212
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.72 E-value=3.8e-07 Score=102.18 Aligned_cols=197 Identities=11% Similarity=0.015 Sum_probs=130.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe--CCCC----CCEEEEEEEeCCCEEEEEE--CCCcEEEEEc
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI--SPSQ----LPYKNLEFLQNQGFLISIT--NDNEIQVWSL 105 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~--~~h~----~~V~~l~fs~d~~~Lls~s--~d~~I~vWd~ 105 (1100)
....+..+++++++++.++...++.|.+||....++... .+.. .....+++ . +++|..++ .++.|.+||+
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEET
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEEC
Confidence 346788999999985444443789999999977665422 2220 13456677 3 45566555 4889999999
Q ss_pred CCCceeeeeecCCCeEEEEEecCCCEEEEEeCC----------CcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 106 ESRSLACCLKWESNITAFSVISGSHFMYIGDEN----------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d----------G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.+++++..+........++++++++++++...+ +.|.+ +|..++++... +.++. .
T Consensus 160 ~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~--id~~t~~v~~~-~~~~~-g----------- 224 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYR--IDAETFTVEKQ-FKFKL-G----------- 224 (328)
T ss_dssp TTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEE--EETTTTEEEEE-EECCT-T-----------
T ss_pred CCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEE--EECCCCeEEEE-EecCC-C-----------
Confidence 999988888666677889999999866665544 55655 55555665532 22221 0
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
..+..++++| ++++++++.. .|.+||..++++.... .+. .......++
T Consensus 225 -~~p~~la~~~--d~~~lyv~~~--~v~~~d~~t~~~~~~~---------~~~------------------~~~~~p~gi 272 (328)
T 3dsm_A 225 -DWPSEVQLNG--TRDTLYWINN--DIWRMPVEADRVPVRP---------FLE------------------FRDTKYYGL 272 (328)
T ss_dssp -CCCEEEEECT--TSCEEEEESS--SEEEEETTCSSCCSSC---------SBC------------------CCSSCEEEE
T ss_pred -CCceeEEEec--CCCEEEEEcc--EEEEEECCCCceeeee---------eec------------------CCCCceEEE
Confidence 3578999987 6776777654 7889999887642100 000 002456778
Q ss_pred EEecC-CCCEEEEE----EcCCcEEEEecC
Q 001321 256 CWASS-SGSILAVG----YIDGDILLWNTS 280 (1100)
Q Consensus 256 ~w~sp-dg~~l~sg----~~DG~I~lWd~~ 280 (1100)
++. | ++..+++. ..+|.|.+||..
T Consensus 273 ~vd-p~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 273 TVN-PNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEC-TTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEc-CCCCeEEEEcccccccCCEEEEECCC
Confidence 875 8 55555555 578999999987
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.67 E-value=2.1e-06 Score=94.87 Aligned_cols=202 Identities=9% Similarity=-0.004 Sum_probs=131.1
Q ss_pred CCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCceEEEe-CC-----CCCCEEEEEEEeCCCEEEEEECC---------
Q 001321 34 IPATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLI-SP-----SQLPYKNLEFLQNQGFLISITND--------- 97 (1100)
Q Consensus 34 ~~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~~~~~~-~~-----h~~~V~~l~fs~d~~~Lls~s~d--------- 97 (1100)
+...+..++++++ +++++ ++.++.|.+|+.+ .+.... .. ....+..+++.++|.+.++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4467899999999 66544 5555689999988 444333 21 12358899999998777766554
Q ss_pred ------CcEEEEEcCCCceeeeeecCCCeEEEEEe----cCCCEEEEEe-CCCcEEEEEEecCCCeeeee--ceeecccc
Q 001321 98 ------NEIQVWSLESRSLACCLKWESNITAFSVI----SGSHFMYIGD-ENGLMSVIKYDADEGKLFQL--PYNISADA 164 (1100)
Q Consensus 98 ------~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s----~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~--~~~i~~~~ 164 (1100)
+.|..||.. ++.............++++ +++++++++. .++.|.+|+++. .+++... -..++.+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-CCccccceEEEECCCCC
Confidence 467777766 5554444444557889999 9998777775 578788887762 2333210 01122110
Q ss_pred cccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCC
Q 001321 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISE 244 (1100)
Q Consensus 165 ~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~ 244 (1100)
...+..+++.| +|..+++.+.++.|.+||..+++....... +
T Consensus 225 -----------~~~p~~i~~d~--~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---------~---------------- 266 (314)
T 1pjx_A 225 -----------EGGADGMDFDE--DNNLLVANWGSSHIEVFGPDGGQPKMRIRC---------P---------------- 266 (314)
T ss_dssp -----------SCEEEEEEEBT--TCCEEEEEETTTEEEEECTTCBSCSEEEEC---------S----------------
T ss_pred -----------CCCCCceEECC--CCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---------C----------------
Confidence 03467899966 788555666788999999886654332211 1
Q ss_pred CCCCCCceEEEEEecCCCCEEEEE-EcCCcEEEEecCCC
Q 001321 245 HQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTSTT 282 (1100)
Q Consensus 245 ~~~~~~~V~sl~w~spdg~~l~sg-~~DG~I~lWd~~~~ 282 (1100)
...+.++++ +|+|..|+++ ..++.|..|++...
T Consensus 267 ----~~~~~~i~~-~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 267 ----FEKPSNLHF-KPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ----SSCEEEEEE-CTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ----CCCceeEEE-CCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 356888997 5999955554 45678999998643
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.64 E-value=4.9e-06 Score=95.51 Aligned_cols=118 Identities=7% Similarity=-0.143 Sum_probs=80.6
Q ss_pred eCCCEEEEEECC-----CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC----------CCcEEEEEEecCC
Q 001321 86 QNQGFLISITND-----NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE----------NGLMSVIKYDADE 150 (1100)
Q Consensus 86 ~d~~~Lls~s~d-----~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~----------dG~V~Iw~~d~~~ 150 (1100)
+++.++...+.. +.|.++|..+++++..+.....- .++++|++++++++.. ++.|.++ |..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi--D~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF--DPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE--CTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEE--ECCC
Confidence 466666666553 69999999999999988655544 8999999999999873 5666555 5545
Q ss_pred CeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc--CCEEEEEEccCCEEEEEe
Q 001321 151 GKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 151 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~--dg~V~lwdl~~~~~~~~~ 216 (1100)
++.... ..+++..... .......+.|+| +|++++++.. ++.|.+.|+.+.+++...
T Consensus 159 ~~vv~~-I~v~g~~r~~-------~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t~kvv~~I 216 (426)
T 3c75_H 159 FLPIAD-IELPDAPRFL-------VGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEGKTFDRML 216 (426)
T ss_dssp CCEEEE-EEETTCCCCC-------BSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CcEEEE-EECCCccccc-------cCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCCCeEEEEE
Confidence 555532 2232110000 002345678877 7988888874 578999999999887554
No 215
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.64 E-value=3e-06 Score=92.20 Aligned_cols=166 Identities=11% Similarity=0.127 Sum_probs=118.2
Q ss_pred eeeecCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEEC-CCcEEEE
Q 001321 28 IAVHYGIP--ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVW 103 (1100)
Q Consensus 28 ~~~~~G~~--~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s~-d~~I~vW 103 (1100)
.+.++... ..+.+++++|+|++|+ +.++.|+.|+.++..+-.... +...+..+.+.+||.++++.+. ++.|..+
T Consensus 27 ~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v 104 (276)
T 3no2_A 27 IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV 104 (276)
T ss_dssp EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence 34555444 3688999999999999 457899999996554443333 3457889999999999999887 7778888
Q ss_pred EcCCCceeeeeecC-------CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001321 104 SLESRSLACCLKWE-------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 104 d~~s~~~l~~~~~~-------~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
|. +++++..+... .....+++.++++++++...++.|.+|+ .. +++.. ++...
T Consensus 105 d~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d--~~-G~~~w---~~~~~------------- 164 (276)
T 3no2_A 105 NM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA--PN-GQLLN---SVKLS------------- 164 (276)
T ss_dssp CT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC--TT-SCEEE---EEECS-------------
T ss_pred eC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC--CC-CCEEE---EEECC-------------
Confidence 86 66666555322 2345667899999999999999776665 44 56552 23321
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEec
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGG 217 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~ 217 (1100)
..+.++...| +|+.++++..++.|..+|..+++++..+.
T Consensus 165 ~~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 165 GTPFSSAFLD--NGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp SCCCEEEECT--TSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred CCccceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 2344566644 68867777777789999999888876654
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.63 E-value=3.7e-05 Score=87.57 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=88.0
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecC----------CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeec
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWE----------SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLP 157 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~----------~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~ 157 (1100)
+..|+.++.++.|..+|..+++.+...... ..+.+ ....++..+++++.+|.| +.++..++++.-.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l--~a~d~~tG~~~W~- 128 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQV--YALNTSDGTVAWQ- 128 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEE--EEEETTTCCEEEE-
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEE--EEEECCCCCEEEE-
Confidence 467888888999999999999988776542 22322 223346788999999966 4455555666521
Q ss_pred eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCc
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDST 237 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 237 (1100)
+.+.... ...++ . .+..+++++.++.|..+|..+++.+..+........
T Consensus 129 ~~~~~~~----------~~~p~----~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~------------- 177 (376)
T 3q7m_A 129 TKVAGEA----------LSRPV----V----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS------------- 177 (376)
T ss_dssp EECSSCC----------CSCCE----E----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------
T ss_pred EeCCCce----------EcCCE----E----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-------------
Confidence 2222110 00111 1 133588999999999999999987655432100000
Q ss_pred cccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 238 FLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 238 ~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.....+.+. .+..++.+..+|.|..+|..++
T Consensus 178 -----------~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 178 -----------LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp ------------CCCCCCEE---ETTEEEECCTTTEEEEEETTTC
T ss_pred -----------ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCC
Confidence 000011121 1346778888899999988765
No 217
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.63 E-value=8.1e-07 Score=111.47 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=129.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCc----------
Q 001321 35 PATASILAFDHIQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNE---------- 99 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~d-----G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~---------- 99 (1100)
...+..++|||||++||.++.+ ..|++||+.+.+.+....+...+..++|+|| ..|+.++.++.
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 3467889999999999998765 3699999987776543222223467899999 98888876554
Q ss_pred ----EEEEEcCCCce--eeeeec---CCCeEEEEEecCCCEEEEEeCCC-----cEEEEEEecCCCe-eeeeceeecccc
Q 001321 100 ----IQVWSLESRSL--ACCLKW---ESNITAFSVISGSHFMYIGDENG-----LMSVIKYDADEGK-LFQLPYNISADA 164 (1100)
Q Consensus 100 ----I~vWd~~s~~~--l~~~~~---~~~Vt~~~~s~~~~~l~~G~~dG-----~V~Iw~~d~~~~~-l~~~~~~i~~~~ 164 (1100)
|.+|++.++.. ...+.. +..+..+.|+|+++++++...++ .|++|+++..... +.. +..+.
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~----l~~~~ 316 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA----LIPDL 316 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE----EECSS
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE----ecCCC
Confidence 89999987752 122222 23588999999999998877544 6777776642112 222 22221
Q ss_pred cccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC----CEEEEEEccCC--EEEEEecCCcccccccccCCCCCCCCcc
Q 001321 165 LSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEA--QIIFVGGGKDLQLKDGVVDSPSEGDSTF 238 (1100)
Q Consensus 165 ~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d----g~V~lwdl~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 238 (1100)
..+....+ | +|.+|++.+.+ +.|.+||+.++ ....+..+
T Consensus 317 ------------~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-------------------- 361 (741)
T 1yr2_A 317 ------------KAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-------------------- 361 (741)
T ss_dssp ------------SSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC--------------------
T ss_pred ------------CceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC--------------------
Confidence 23344433 5 57778887764 45899999874 44444332
Q ss_pred ccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 239 LEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 239 g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
....+.++.|. ++..+++...||..++|.+.
T Consensus 362 ---------~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 362 ---------SKDNLESVGIA--GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp ---------CSSEEEEEEEE--BTEEEEEEEETTEEEEEEEE
T ss_pred ---------CCCeEEEEEEE--CCEEEEEEEECCEEEEEEEe
Confidence 03346677775 56678888899988888654
No 218
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=0.0045 Score=77.75 Aligned_cols=212 Identities=9% Similarity=0.078 Sum_probs=119.7
Q ss_pred CeEEEEEcC--CCCEEEEEECCCeEEEEeCCCceEEEeCC------CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 37 TASILAFDH--IQRLLAIATLDGRIKVIGGDGIEGLLISP------SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 37 ~v~~la~sp--~~~lLA~gs~dG~I~vw~~~~~~~~~~~~------h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
.|.++..+. ++. |-+|+.++-|..|+....+...... ....|.++...+++. |..++.++-|..||..++
T Consensus 116 ~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~ 193 (781)
T 3v9f_A 116 DVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGK-LYIGHVEGGLSILSLNDK 193 (781)
T ss_dssp CEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEEEEETTE-EEEEETTTEEEEEETTTT
T ss_pred cceEEEecCccCCC-EEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEEECCCCC-EEEEecCCCeEEEcCCCC
Confidence 588898888 665 4568856668889886655443321 124588888887754 444666656999999887
Q ss_pred ceeeeee--------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 109 SLACCLK--------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 109 ~~l~~~~--------~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
+...... ....|.++..++++.+. +|..+| +.+ ++...+++.. +...... . .......|.
T Consensus 194 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lw-igt~~G-l~~--~d~~~~~~~~--~~~~~~~---~---~~l~~~~i~ 261 (781)
T 3v9f_A 194 SVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIW-IGTSKG-LAL--FNANTETFTN--FHNNPGN---I---HGALSSYIF 261 (781)
T ss_dssp EEEEECC--------CCSSEEEEEECTTCCEE-EEETTE-EEE--EETTTTEEEC-------------------CCCCEE
T ss_pred ceEeeecCCCCcccCCCCceeEEEEcCCCCEE-EEeCCc-Hhe--ECCCCCcEEE--EEcCCCc---c---ccccCceEE
Confidence 6543211 12569999998877644 455555 544 4544455543 2111100 0 000125689
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
++.. ..+|. |.+|...+-|.++|..+......... .+. .+. ..... .......|.+++.. +
T Consensus 262 ~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-~f~---~~~--~~~~~---------~~l~~~~v~~i~~D-~ 322 (781)
T 3v9f_A 262 SIKQ--LKDNK-LWIATELNGIMILDLQQNQFLLPEQI-RFE---FIR--EGDNN---------YSLSNASARYIFQD-S 322 (781)
T ss_dssp EEEE--CTTSE-EEEEESSSCEEEEETTCC----------CE---EEC--BCSST---------TSBSSSCEEEEEEC-S
T ss_pred EEEE--CCCCC-EEEEeCCCCeEEECCCCCeeeeeecc-ccc---ccc--CCCCC---------CCCCCCeEEEEEEe-C
Confidence 9988 43676 88888845558899887765332210 000 000 00000 00115678898854 7
Q ss_pred CCCEEEEEEcCCcEEEEecCCC
Q 001321 261 SGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+|. |-.|..++-|..|+....
T Consensus 323 ~g~-lWigt~~~Gl~~~~~~~~ 343 (781)
T 3v9f_A 323 FNN-IWIGTWGGGINFISNAPP 343 (781)
T ss_dssp SCC-EEEEEBSSCEEEECSSCC
T ss_pred CCC-EEEEecCCeEEEeCCCCC
Confidence 776 667776777888887654
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.58 E-value=1.5e-05 Score=88.93 Aligned_cols=192 Identities=11% Similarity=0.038 Sum_probs=126.2
Q ss_pred eEEEEEcCC-CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 38 ASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 38 v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
....+|+|+ +.+++++..++.|.+|+.++.+.... .....+.+++|+++|.++++. ++.|.+||..++++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeC
Confidence 467899997 55677777789999999976654432 234679999999998766654 44599999988876543322
Q ss_pred C-----CCeEEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 117 E-----SNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 117 ~-----~~Vt~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
. ..+..+++++++++.++...+ +...||.++ ++++.. +.... ....+++|+|
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~----~~~~~------------~~~~~i~~s~- 188 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK----LFADI------------SIPNSICFSP- 188 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE----EEEEE------------SSEEEEEECT-
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE----eeCCC------------cccCCeEEcC-
Confidence 1 358899999999865544321 345678887 355543 11111 3467899977
Q ss_pred CCCCEEEEEE-cCCEEEEEEcc--CC-EEE--EEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 188 SSGNRVLIAY-ENALVILWDVS--EA-QII--FVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 188 ~~g~~ll~~~-~dg~V~lwdl~--~~-~~~--~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
+++.++++. .++.|.+||+. ++ .+. ..+.. +. .....+.++++. ++
T Consensus 189 -dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--------~~------------------~~~~~p~gi~~d-~~ 240 (326)
T 2ghs_A 189 -DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID--------ST------------------GIKGGMDGSVCD-AE 240 (326)
T ss_dssp -TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--------CT------------------TSSSEEEEEEEC-TT
T ss_pred -CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE--------CC------------------CCCCCCCeeEEC-CC
Confidence 677665554 46789999986 44 210 01100 00 003345678875 89
Q ss_pred CCEEEEEEcCCcEEEEec
Q 001321 262 GSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~ 279 (1100)
|...++...++.|..||.
T Consensus 241 G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 241 GHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SCEEEEEETTTEEEEECT
T ss_pred CCEEEEEeCCCEEEEECC
Confidence 987777767788999987
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.52 E-value=2e-05 Score=87.94 Aligned_cols=192 Identities=13% Similarity=0.004 Sum_probs=118.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCC-----CCCEEEEEEEeCCCEEEEEECC------CcEE
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS-----QLPYKNLEFLQNQGFLISITND------NEIQ 101 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h-----~~~V~~l~fs~d~~~Lls~s~d------~~I~ 101 (1100)
..+..+.+++++|+++++++ +.+ .|.+|+.+..+....... ...+..++++++|.++++...+ +.|.
T Consensus 87 ~~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~ 164 (326)
T 2ghs_A 87 ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY 164 (326)
T ss_dssp ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred ECCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence 34678999999999987775 444 599999865544322221 2358899999998876655422 3455
Q ss_pred EEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCC-eeeee-ce-eecccccccccCCCCCCCC
Q 001321 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEG-KLFQL-PY-NISADALSEKAGFPLLSHQ 177 (1100)
Q Consensus 102 vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~-~l~~~-~~-~i~~~~~~~~~~~~~~~~~ 177 (1100)
.+| +++.............++|+|++++++++. .++.|.+|+++...+ .+... .+ .+... ..
T Consensus 165 ~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~------------~~ 230 (326)
T 2ghs_A 165 HVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI------------KG 230 (326)
T ss_dssp EEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS------------SS
T ss_pred EEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC------------CC
Confidence 555 555443333334578999999999887765 467776666652234 32210 01 11111 14
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
.+.++.+.+ +|...++.+.++.|.+||.. ++....... + ...+++++|
T Consensus 231 ~p~gi~~d~--~G~lwva~~~~~~v~~~d~~-g~~~~~i~~---------~--------------------~~~~~~~af 278 (326)
T 2ghs_A 231 GMDGSVCDA--EGHIWNARWGEGAVDRYDTD-GNHIARYEV---------P--------------------GKQTTCPAF 278 (326)
T ss_dssp EEEEEEECT--TSCEEEEEETTTEEEEECTT-CCEEEEEEC---------S--------------------CSBEEEEEE
T ss_pred CCCeeEECC--CCCEEEEEeCCCEEEEECCC-CCEEEEEEC---------C--------------------CCCcEEEEE
Confidence 467888854 78755555567889999984 444333211 1 446889997
Q ss_pred ecCCCCEEEEEEcCC
Q 001321 258 ASSSGSILAVGYIDG 272 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG 272 (1100)
..+++..|+++...+
T Consensus 279 ~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 IGPDASRLLVTSARE 293 (326)
T ss_dssp ESTTSCEEEEEEBCT
T ss_pred ecCCCCEEEEEecCC
Confidence 547887776655443
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.50 E-value=9.4e-05 Score=84.13 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=102.1
Q ss_pred ccceeeeecCCCCCe------EEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCC----------CCCEEEEEEEeC
Q 001321 24 LNLRIAVHYGIPATA------SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS----------QLPYKNLEFLQN 87 (1100)
Q Consensus 24 ~~~~~~~~~G~~~~v------~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h----------~~~V~~l~fs~d 87 (1100)
.+++....+-++..+ ...++ ++..|.+++.+|.|+.||....+.+-.... ...+...-. .+
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 102 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL--ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VS 102 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EE
T ss_pred CcceEEeEEecCCCccccceeeccEE--ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-Ee
Confidence 456666666554321 11222 367888899999999999965544422211 223433222 24
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
+..++.++.++.|..+|..+++.+........+.+.-.. .+..+++++.+|.| +-++..+++.... +........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l--~~~d~~tG~~~W~-~~~~~~~~~- 177 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQL--QALNEADGAVKWT-VNLDMPSLS- 177 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEE--EEEETTTCCEEEE-EECCC-----
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeE--EEEECCCCcEEEE-EeCCCCcee-
Confidence 467888889999999999999988777555433221111 24588899999966 4455555665522 222111000
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
......++ . .+..++++..++.|..+|..+++.+...
T Consensus 178 ----~~~~~~~~----~----~~~~v~~g~~~g~l~~~d~~tG~~~w~~ 214 (376)
T 3q7m_A 178 ----LRGESAPT----T----AFGAAVVGGDNGRVSAVLMEQGQMIWQQ 214 (376)
T ss_dssp -----CCCCCCE----E----ETTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred ----ecCCCCcE----E----ECCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 00000111 1 2335888999999999999998876544
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.49 E-value=1e-05 Score=91.05 Aligned_cols=228 Identities=11% Similarity=0.082 Sum_probs=132.4
Q ss_pred ceeeeecCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEeCCCceEEE-------eCCCCCCEEEEEEEeCCCEEEEEEC
Q 001321 26 LRIAVHYGIPATASILAFDHIQRLLAIATL--DGRIKVIGGDGIEGLL-------ISPSQLPYKNLEFLQNQGFLISITN 96 (1100)
Q Consensus 26 ~~~~~~~G~~~~v~~la~sp~~~lLA~gs~--dG~I~vw~~~~~~~~~-------~~~h~~~V~~l~fs~d~~~Lls~s~ 96 (1100)
++.+..+. ..+..++++|+++++++... +|.++||.++...+.. ...|-..+..++|.+++. |..++.
T Consensus 9 ~~~v~~~~--~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~ 85 (343)
T 2qe8_A 9 LEVVAELS--LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDN 85 (343)
T ss_dssp CEEEEEES--SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEEC
T ss_pred eEEEEEcC--CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcC
Confidence 34455554 67899999999999888642 3435555543222221 112446899999999954 555553
Q ss_pred ------CCcEEEEEcCCCceeeeeecC-------CCeEEEEEecCCCEEEEEeC----CCcEEEEEEecCCCeeeeecee
Q 001321 97 ------DNEIQVWSLESRSLACCLKWE-------SNITAFSVISGSHFMYIGDE----NGLMSVIKYDADEGKLFQLPYN 159 (1100)
Q Consensus 97 ------d~~I~vWd~~s~~~l~~~~~~-------~~Vt~~~~s~~~~~l~~G~~----dG~V~Iw~~d~~~~~l~~~~~~ 159 (1100)
++.|.+||+.+++++..+..+ ..+..+++++++.++++.+. ++.|.+|+++. +++...
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~--g~~~r~--- 160 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT--GLAARV--- 160 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT--CCEEEE---
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC--CCEEEE---
Confidence 478999999999877766432 24689999988777777654 67777777653 443321
Q ss_pred ecccccc-----------cccC--CCCC----CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccc
Q 001321 160 ISADALS-----------EKAG--FPLL----SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1100)
Q Consensus 160 i~~~~~~-----------~~~~--~~~~----~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~ 222 (1100)
+.+|... ..+. .+.. -...+..|+|+| +|+.|+.+...+. ++|.+....... ..-....
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~-~l~~~~~~~~~~-~~~~~~~ 236 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHST-SMYRIKSADLSN-LQLTDAE 236 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCS-EEEEEEHHHHTC-TTCCHHH
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCC-eEEEEEHHHhcC-CCCChhh
Confidence 2211000 0000 0000 013468899987 7877888887775 566554311000 0000000
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
+...+. ..| +.+....+++. ++|..+++...++.|.+||..++
T Consensus 237 ~~~~~~--------~~g--------~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 237 LGSKIE--------RYS--------EKPICDGISID-KDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp HHTTCE--------EEE--------ECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETTTT
T ss_pred hhcceE--------ecc--------cCCCCceEEEC-CCCCEEEEccCCCeEEEEECCCC
Confidence 000000 000 02344567865 89998888889999999998444
No 223
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.49 E-value=3.4e-06 Score=96.83 Aligned_cols=211 Identities=10% Similarity=0.052 Sum_probs=127.7
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEeCCCceEEEe--CC--C----CCCEEEEEEEeCCCEEEEEEC--CCc
Q 001321 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLI--SP--S----QLPYKNLEFLQNQGFLISITN--DNE 99 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs----------~dG~I~vw~~~~~~~~~~--~~--h----~~~V~~l~fs~d~~~Lls~s~--d~~ 99 (1100)
.++++|++++|.++. .++.|.++|....+++-. .+ . ...-..++|+|||++|+.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998886 468999999977665532 22 0 123457899999999998874 588
Q ss_pred EEEEEcCCCceeeeeecCCC--------eEEEEEecCCCEEEEEeCCCcEEE-----EEEe-----------cCCCeeee
Q 001321 100 IQVWSLESRSLACCLKWESN--------ITAFSVISGSHFMYIGDENGLMSV-----IKYD-----------ADEGKLFQ 155 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~~~~~~--------Vt~~~~s~~~~~l~~G~~dG~V~I-----w~~d-----------~~~~~l~~ 155 (1100)
|.|.|+.+++++..+...+. -..+++++++.++++...++.+.. ++.+ .+.+.+..
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 99999999999887755431 112445566665555554443321 0000 00000000
Q ss_pred ec-----eeec--cccc--ccccCC------C-CCCCCCeEEEEeccCCCCCEEEEEEc----------CCEEEEEEccC
Q 001321 156 LP-----YNIS--ADAL--SEKAGF------P-LLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSE 209 (1100)
Q Consensus 156 ~~-----~~i~--~~~~--~~~~~~------~-~~~~~~V~sv~f~P~~~g~~ll~~~~----------dg~V~lwdl~~ 209 (1100)
.. |.+. +... ...... . .........++++| ++.+++++.. ++.|.+.|..+
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~--dg~rlyVa~~~~~~gthk~~s~~VsVID~~T 359 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR--QSDRIYLLVDQRDEWKHKAASRFVVVLNAET 359 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG--GGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC--CCCEEEEEecccccccccCCCCEEEEEECCC
Confidence 00 0000 0000 000000 0 00011122357777 6777777653 34799999999
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC-EEEEEE-cCCcEEEEecCCCC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS-ILAVGY-IDGDILLWNTSTTA 283 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~-~l~sg~-~DG~I~lWd~~~~~ 283 (1100)
.+++....- .....++.|. |||+ ++++.. .++.|.++|..+.+
T Consensus 360 ~kvv~~I~v------------------------------g~~P~gia~s-pDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 360 GERINKIEL------------------------------GHEIDSINVS-QDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp CCEEEEEEE------------------------------EEEECEEEEC-CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEEEEEEC------------------------------CCCcCeEEEc-cCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 988765421 2346678875 9999 888888 59999999998874
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.49 E-value=4e-06 Score=92.70 Aligned_cols=191 Identities=12% Similarity=0.063 Sum_probs=122.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCC----CCCEEEEEEEeCCCEEEE----EEC----------
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPS----QLPYKNLEFLQNQGFLIS----ITN---------- 96 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h----~~~V~~l~fs~d~~~Lls----~s~---------- 96 (1100)
...+..++++++++++++...++.|.+|+.++....+.... ...+..+++.++|...++ +..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~ 164 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADP 164 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccc
Confidence 45688999999999776555568999999874432222111 124678999999887775 221
Q ss_pred ---CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCC------CcEEEEEEecCCCeeeeeceeeccccccc
Q 001321 97 ---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDEN------GLMSVIKYDADEGKLFQLPYNISADALSE 167 (1100)
Q Consensus 97 ---d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~d------G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~ 167 (1100)
.+.|..||..++++.... .......++|+|++++|+++... +.|.+|+++. +.+... ..+...
T Consensus 165 ~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~--~~l~~~-~~~~~~---- 236 (305)
T 3dr2_A 165 ELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD--GALHDR-RHFASV---- 236 (305)
T ss_dssp SSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET--TEEEEE-EEEECC----
T ss_pred ccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC--CCccCC-eEEEEC----
Confidence 246788888777655444 33557889999999999988775 6676666654 222211 111100
Q ss_pred ccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCC
Q 001321 168 KAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQP 247 (1100)
Q Consensus 168 ~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~ 247 (1100)
....+.++.+.+ +|+ |.++..+| |.+||.....+..+. .
T Consensus 237 -------~~~~pdgi~~d~--~G~-lwv~~~~g-v~~~~~~g~~~~~~~-~----------------------------- 275 (305)
T 3dr2_A 237 -------PDGLPDGFCVDR--GGW-LWSSSGTG-VCVFDSDGQLLGHIP-T----------------------------- 275 (305)
T ss_dssp -------SSSCCCSEEECT--TSC-EEECCSSE-EEEECTTSCEEEEEE-C-----------------------------
T ss_pred -------CCCCCCeEEECC--CCC-EEEecCCc-EEEECCCCCEEEEEE-C-----------------------------
Confidence 013345677754 788 77766555 789998544433332 1
Q ss_pred CCCceEEEEEecCCCCEEEEEEcCCcEEE
Q 001321 248 EEKEISALCWASSSGSILAVGYIDGDILL 276 (1100)
Q Consensus 248 ~~~~V~sl~w~spdg~~l~sg~~DG~I~l 276 (1100)
...+.+++|. +++..|+.+..++..++
T Consensus 276 -~~~~~~~~f~-~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 276 -PGTASNCTFD-QAQQRLFITGGPCLWML 302 (305)
T ss_dssp -SSCCCEEEEC-TTSCEEEEEETTEEEEE
T ss_pred -CCceeEEEEe-CCCCEEEEEcCCeEEEE
Confidence 2247788986 99998888887654443
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.48 E-value=3.2e-06 Score=104.99 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=79.6
Q ss_pred CCCCCEEEEEEEeCCCEEEEEE-CC----CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCc--------
Q 001321 74 PSQLPYKNLEFLQNQGFLISIT-ND----NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGL-------- 140 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~s-~d----~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~-------- 140 (1100)
+|...+..++|||||.+|+-+. .. .+|++||+.+++.+...........++|+ +++.|+.+..+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 3556799999999999887433 22 46999999999876543222224678899 9999888877643
Q ss_pred -----EEEEEEecCCCeeeeeceeecc-cccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC----CEEEEEEccCC
Q 001321 141 -----MSVIKYDADEGKLFQLPYNISA-DALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN----ALVILWDVSEA 210 (1100)
Q Consensus 141 -----V~Iw~~d~~~~~l~~~~~~i~~-~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d----g~V~lwdl~~~ 210 (1100)
|++|++.+....-... |..+. +. ..+.++.|+| +|++|++.... ..|.+||+.++
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v-~~~~~~~~------------~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLV-FGAIPAQH------------HRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEE-ESCSGGGC------------CSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTST
T ss_pred CCCcEEEEEECCCCcccceEE-EecCCCCC------------eEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCC
Confidence 6666655432211110 22222 21 4578899977 78877665542 48889998776
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.48 E-value=5.1e-05 Score=93.48 Aligned_cols=111 Identities=11% Similarity=0.156 Sum_probs=67.9
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCC----------e--EEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESN----------I--TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~----------V--t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~ 155 (1100)
++.|+.++.++.|..+|..+++.+..+..... + ..+++ .+..+++++.++.|.. +|..++++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~a--lD~~tG~~~- 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIA--LDAATGKEV- 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEE-
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEE--EECCCCCEE-
Confidence 46777788889999999999999987754421 1 12222 4678999999997644 555557766
Q ss_pred eceeeccc-ccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 156 LPYNISAD-ALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 156 ~~~~i~~~-~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
+++... ..... .. +...|.-.+.+++++.. +|.|+.||..+++.+-.+
T Consensus 152 --W~~~~~~~~~~~--------~~---~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 152 --WHQNTFEGQKGS--------LT---ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp --EEEETTTTCCSS--------CB---CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred --eeecCCcCcCcC--------cc---cccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 333321 10000 00 00111112334666664 689999999999886544
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.48 E-value=2e-06 Score=106.83 Aligned_cols=205 Identities=12% Similarity=0.125 Sum_probs=126.8
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATL-----DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND 97 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~-----dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d 97 (1100)
.+|+.....- +...+..++||||+++||.+.. ...|+|||+.+.+.+...-+......++|+ |+..|+.++.+
T Consensus 117 llD~n~la~~-~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 117 FLDPNTLSPD-GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp EECGGGGSTT-SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred EEehhhccCC-CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence 3555554443 3457888999999999996553 257999999877654332111113578899 99999988877
Q ss_pred Cc-------------EEEEEcCCCce----eeeee--cCCCeEEEEEecCCCEEEEEeCC----CcEEEEEEecCCCeee
Q 001321 98 NE-------------IQVWSLESRSL----ACCLK--WESNITAFSVISGSHFMYIGDEN----GLMSVIKYDADEGKLF 154 (1100)
Q Consensus 98 ~~-------------I~vWd~~s~~~----l~~~~--~~~~Vt~~~~s~~~~~l~~G~~d----G~V~Iw~~d~~~~~l~ 154 (1100)
.. |.+|++.+... +.... ++..+..+.++|++++|++.... ..|++++++...+.+.
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 43 99999987652 22222 34457889999999998765532 3555555543322333
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc----CCEEEEEEccCCEE---EEEecCCcccccccc
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE----NALVILWDVSEAQI---IFVGGGKDLQLKDGV 227 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~----dg~V~lwdl~~~~~---~~~~~~~~~~~~~~l 227 (1100)
. +..+. ...... +.| +|.+|++.+. ++.|.+||+.++.. ..+..+
T Consensus 275 ~----l~~~~------------~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--------- 326 (693)
T 3iuj_A 275 T----VQGDL------------DADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--------- 326 (693)
T ss_dssp E----EECSS------------SSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC---------
T ss_pred E----EeCCC------------CceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC---------
Confidence 2 22222 333333 433 4555665554 35788999887643 333333
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC---cEEEEecCC
Q 001321 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG---DILLWNTST 281 (1100)
Q Consensus 228 ~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG---~I~lWd~~~ 281 (1100)
...+. .| ++++++|+....++ .|.+|++.+
T Consensus 327 ---------------------~~~~~--~~-s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 327 ---------------------RQQVL--TV-HSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp ---------------------CSSCE--EE-EEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ---------------------CCCEE--EE-EEECCEEEEEEEECCeeEEEEEECCC
Confidence 22232 44 48888887776554 688888763
No 228
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.45 E-value=1.7e-05 Score=91.56 Aligned_cols=214 Identities=10% Similarity=0.031 Sum_probs=131.2
Q ss_pred EEEcCCCCEEEEEECCC--eEEEEeCCCceEE-Ee----CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeee
Q 001321 41 LAFDHIQRLLAIATLDG--RIKVIGGDGIEGL-LI----SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 41 la~sp~~~lLA~gs~dG--~I~vw~~~~~~~~-~~----~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~ 113 (1100)
++|+|++++|+++..++ .|.+|+....... .. ..+...+..++|+|++++|..+..++.|..||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 99999999999998866 7999987543221 22 22445678899999656777777788999999988764332
Q ss_pred ----e-ecCCCe--EEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccC---CCCCCCCCeEEE
Q 001321 114 ----L-KWESNI--TAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAG---FPLLSHQPVVGV 182 (1100)
Q Consensus 114 ----~-~~~~~V--t~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~V~sv 182 (1100)
. ...+.- ..++|+|++..|++++. ++.|+.|+.+ . .... +.++....... ........+.+|
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--g-~~~~----~~g~~~~~g~~dg~~~~~~~~~P~gi 328 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--G-ECEW----FCGSATQKTVQDGLREEALFAQPNGM 328 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--C-CEEE----EEECTTCCSCBCEEGGGCBCSSEEEE
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--C-CEEE----EEeCCCCCCcCCCcccccEeCCCeEE
Confidence 1 111222 39999997777777664 5655554433 2 2221 11110000000 000112568999
Q ss_pred EeccCCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCC
Q 001321 183 LPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSS 261 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spd 261 (1100)
++.| +|..+++-+ .+..|+.||+.++.+..+.++... .+. ..|.. ....-.....+++. ++
T Consensus 329 a~d~--dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~----------~g~--~~g~~---~~~~~~~P~giavd-~~ 390 (409)
T 3hrp_A 329 TVDE--DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDV----------ASQ--IDGTP---LEATFNYPYDICYD-GE 390 (409)
T ss_dssp EECT--TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTC----------BSC--CCBST---TTCCBSSEEEEEEC-SS
T ss_pred EEeC--CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCC----------CCc--CCCCh---hceEeCCceEEEEc-CC
Confidence 9977 688444444 678999999888887776654100 000 01100 11113467888975 88
Q ss_pred CCEEEEEEcCCcEEEEec
Q 001321 262 GSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 262 g~~l~sg~~DG~I~lWd~ 279 (1100)
|..+++-..++.|+.+++
T Consensus 391 g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 391 GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SEEEEEESTTCEEEEEEE
T ss_pred CCEEEEECCCCeEEEEEe
Confidence 887777778888888765
No 229
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.36 E-value=2.1e-05 Score=86.81 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=126.3
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 37 TASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 37 ~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
-....+|+|+++ +++++..++.|..|+.++. ......+...+..+++.++|..+++...++.|.+||.. ++......
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 456789999998 7788888899999998554 33333455678999999998755544456789999987 55433221
Q ss_pred -cC----CCeEEEEEecCCCEEEE----EeCC-----------CcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 116 -WE----SNITAFSVISGSHFMYI----GDEN-----------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 116 -~~----~~Vt~~~~s~~~~~l~~----G~~d-----------G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.. ..+..+++++++.+.++ |..+ +.-.||.++..++++... . ..
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---~--~~----------- 187 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---A--DL----------- 187 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---E--EE-----------
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---e--cC-----------
Confidence 11 34678999999987775 4321 234678888766666542 1 11
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcC------CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCC
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYEN------ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEE 249 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~d------g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~ 249 (1100)
.....++|+| +++.|+++... +.|.+|++..+.+...... . ... .
T Consensus 188 -~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~----~--~~~--------------------~ 238 (305)
T 3dr2_A 188 -DHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF----A--SVP--------------------D 238 (305)
T ss_dssp -SSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEE----E--CCS--------------------S
T ss_pred -CCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE----E--ECC--------------------C
Confidence 4568899987 68777777765 6899999987652111100 0 000 2
Q ss_pred CceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 250 KEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 250 ~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.....+++. ++|. |.++..+| |.+|+..
T Consensus 239 ~~pdgi~~d-~~G~-lwv~~~~g-v~~~~~~ 266 (305)
T 3dr2_A 239 GLPDGFCVD-RGGW-LWSSSGTG-VCVFDSD 266 (305)
T ss_dssp SCCCSEEEC-TTSC-EEECCSSE-EEEECTT
T ss_pred CCCCeEEEC-CCCC-EEEecCCc-EEEECCC
Confidence 233456654 8898 55555554 8899874
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.34 E-value=8.4e-05 Score=91.76 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=67.0
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCCe------------EEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNI------------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~V------------t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~ 155 (1100)
+..|+.++.++.|..+|..+|+.+..+...... ..+++ .+..+++++.+|.|.. +|..+|++.-
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~A--lDa~TG~~~W 145 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEA--IDAKTGQRAW 145 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEE--EETTTCCEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEE--EECCCCCEee
Confidence 467888888999999999999998887443210 11222 4678999999997644 5555677663
Q ss_pred eceeeccc-ccccccCCCCCCCCCeEEEEeccC-CCCCEEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 156 LPYNISAD-ALSEKAGFPLLSHQPVVGVLPHPN-SSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 156 ~~~~i~~~-~~~~~~~~~~~~~~~V~sv~f~P~-~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
+.... .. .....+...|. .++ .++++.. +|.|+.||..+++.+-.+
T Consensus 146 ---~~~~~~~~-----------~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 146 ---SVDTRADH-----------KRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ---EEECCSCT-----------TSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ---eecCcCCC-----------CCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 23211 00 00001111111 134 3666553 689999999999886554
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.23 E-value=4.6e-05 Score=85.65 Aligned_cols=200 Identities=8% Similarity=-0.016 Sum_probs=128.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEeCCCceEE--EeCC-----CCCCEEEEEEEeCCCEEEEEE----CC
Q 001321 34 IPATASILAFDHIQRLLAIATL-----DGRIKVIGGDGIEGL--LISP-----SQLPYKNLEFLQNQGFLISIT----ND 97 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~-----dG~I~vw~~~~~~~~--~~~~-----h~~~V~~l~fs~d~~~Lls~s----~d 97 (1100)
+-..+..++++++++++++-+. ++.|.+||....+++ +..+ +...+..++|.++++++...+ .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 3457899999999988777654 589999998755432 2222 223568999998656654444 47
Q ss_pred CcEEEEEcCCCceeeeeec------------------------------CCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 98 NEIQVWSLESRSLACCLKW------------------------------ESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~------------------------------~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
+.|.+||+.+++....+.. ...+..++++|++++|+++...+. ++|.++
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~ 223 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIK 223 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEE
Confidence 8899999998876554311 123688999999999999988775 678776
Q ss_pred cC---CCeeeee----ceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCc
Q 001321 148 AD---EGKLFQL----PYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKD 220 (1100)
Q Consensus 148 ~~---~~~l~~~----~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~ 220 (1100)
.. .+.+... .+...++ ...+.++++.+ +|..+++.+.++.|.+||..+++.......
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~------------~g~pdgia~d~--~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-- 287 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSE------------KPICDGISIDK--DHNIYVGDLAHSAIGVITSADRAYKLLVTD-- 287 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEE------------CCSCSCEEECT--TCCEEEEEGGGTEEEEEETTTTEEEEEEEC--
T ss_pred HHHhcCCCCChhhhhcceEeccc------------CCCCceEEECC--CCCEEEEccCCCeEEEEECCCCCEEEEEEC--
Confidence 41 1111000 0000011 13456678855 688677777788999999856665433321
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEE
Q 001321 221 LQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLW 277 (1100)
Q Consensus 221 ~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lW 277 (1100)
. +-..++++++. ++|..+++....+.+.+|
T Consensus 288 -----~---------------------~~~~p~~va~~-~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 -----E---------------------KLSWTDSFNFG-SDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -----G---------------------GGSCEEEEEEC-TTSCEEEEECCGGGSGGG
T ss_pred -----C---------------------ceecCCeeEEC-CCCcEEEEeCcccccccc
Confidence 0 03357788875 888877776655444333
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.21 E-value=5.1e-06 Score=93.74 Aligned_cols=68 Identities=7% Similarity=-0.066 Sum_probs=53.3
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEeCCCceEEEeCCCC--------CCEEEEEEEeCCCEEEEEEC--CCc
Q 001321 40 ILAFDHIQRLLAIAT----------LDGRIKVIGGDGIEGLLISPSQ--------LPYKNLEFLQNQGFLISITN--DNE 99 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs----------~dG~I~vw~~~~~~~~~~~~h~--------~~V~~l~fs~d~~~Lls~s~--d~~ 99 (1100)
.++|+|++++|.++. .++.|.+||....+++....-. ..-..++|+|||++|+.+.. ++.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 799999999999997 3689999999777665432111 23458999999999998874 467
Q ss_pred EEE--EEcCC
Q 001321 100 IQV--WSLES 107 (1100)
Q Consensus 100 I~v--Wd~~s 107 (1100)
|.| ||+.+
T Consensus 149 v~V~~iD~~t 158 (368)
T 1mda_H 149 AGLSVPGASD 158 (368)
T ss_dssp EEEEETTTEE
T ss_pred EEEEEEchhh
Confidence 888 99877
No 233
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.18 E-value=7.8e-07 Score=75.25 Aligned_cols=65 Identities=26% Similarity=0.521 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001321 1028 PRLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1099 (1100)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1100)
+....+.+|+.+ -.++.......-+++.||||||+.|.+||++|+++|+.|..-|++|- .+.|||
T Consensus 12 ~~~d~l~~vq~e---l~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~----rk~wwk 76 (80)
T 1l4a_A 12 QQSKRLQQTQAQ---VEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLK----RKFWWK 76 (80)
T ss_dssp CCSCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHH----HHCC--
T ss_pred ccccHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 334556666666 44456788899999999999999999999999999999999998884 456886
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.13 E-value=0.00056 Score=84.37 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=114.5
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCC-----------E-EEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLP-----------Y-KNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~-----------V-~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
+..|.+++.++.|+-+|....+.+-......+ + ..+.+ ++.+|+.++.|+.|..||..+++++..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 67888899999999999865554432221111 0 11222 3567888889999999999999998776
Q ss_pred ecC------CCeEEEEEecCCCEEEEEeC------CCcEEEEEEecCCCeeeeecee-eccccccc----cc--CCCC--
Q 001321 115 KWE------SNITAFSVISGSHFMYIGDE------NGLMSVIKYDADEGKLFQLPYN-ISADALSE----KA--GFPL-- 173 (1100)
Q Consensus 115 ~~~------~~Vt~~~~s~~~~~l~~G~~------dG~V~Iw~~d~~~~~l~~~~~~-i~~~~~~~----~~--~~~~-- 173 (1100)
... ..+++--+. .+..++++.. +|.| +-+|..++++.-. +. .++..... .. ....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v--~a~D~~tG~~~W~-~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYV--TAYDAETGKEAWR-FYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEE--EEEETTTCCEEEE-EESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred cCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEE--EEEECCCCcEEEE-ecccCCCcccccccccccccccccC
Confidence 442 112111111 1456666653 5655 5555556776532 11 11110000 00 0000
Q ss_pred --------CCCCCeEEEEeccCCCCCEEEEEEcCCE-------------------EEEEEccCCEEEEEecCCccccccc
Q 001321 174 --------LSHQPVVGVLPHPNSSGNRVLIAYENAL-------------------VILWDVSEAQIIFVGGGKDLQLKDG 226 (1100)
Q Consensus 174 --------~~~~~V~sv~f~P~~~g~~ll~~~~dg~-------------------V~lwdl~~~~~~~~~~~~~~~~~~~ 226 (1100)
........+++.| +..+++++..++. |..||..+++.+-.+........
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~--~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w-- 299 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDP--ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW-- 299 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEET--TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS--
T ss_pred CceeeecCCCCccccceeEcC--CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc--
Confidence 0001122567766 4556888887764 89999999988765532000000
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCC---EEEEEEcCCcEEEEecCCCCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGS---ILAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~---~l~sg~~DG~I~lWd~~~~~~ 284 (1100)
. + . -...+.-.... .+|. .++.+..+|.|.++|..+++.
T Consensus 300 --------d------~--~--~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 300 --------D------Y--T--ATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp --------C------C--C--CCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred --------c------c--c--CCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 0 0 0 01111111111 3554 788899999999999998843
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.11 E-value=0.00017 Score=81.29 Aligned_cols=75 Identities=7% Similarity=-0.138 Sum_probs=53.1
Q ss_pred EEEeeCCCeEEEEec---------CceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEc
Q 001321 542 LSFCFINSSLAVGNE---------FGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFT 612 (1100)
Q Consensus 542 lafspd~~~Lasg~~---------dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafS 612 (1100)
++|+||++.|.++.. ++.+.++|+.+... +..+.. ......++|+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-------------------------v~~i~v-g~~p~gi~~s 322 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-------------------------SGPISN-GHDSDAIIAA 322 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-------------------------EECCEE-EEEECEEEEC
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-------------------------EEEEEC-CCCcceEEEC
Confidence 689999998887644 24566999887521 222211 1257899999
Q ss_pred CCCCEE-EEEe-CCceEEEEecCCceEEEEee
Q 001321 613 SSGAKL-AVGF-ECGRVAVLDMNLLSVLFFTD 642 (1100)
Q Consensus 613 p~g~~L-avGs-~dG~V~vwD~~~~~~~~~~~ 642 (1100)
|||+++ ++.. .++.|.|||+.+.+++-++.
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence 999854 4555 58999999999999984443
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.08 E-value=4.4e-07 Score=103.45 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=96.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecC--CCeEEE
Q 001321 46 IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWE--SNITAF 123 (1100)
Q Consensus 46 ~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~--~~Vt~~ 123 (1100)
++.+|++|+.||.|+.||....+.+-.... +++.+..+..++..+++++.|+.|..||..+++.+...... ..+.+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 578999999999999999866555433333 55555666677767777788999999999998876554322 111100
Q ss_pred EEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEE
Q 001321 124 SVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVI 203 (1100)
Q Consensus 124 ~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~ 203 (1100)
-+...+..+++|+.+|.|+.|+.. +|+.. +++..+. .+.+.| .+..+++++.++.|+
T Consensus 87 p~~~~~~~v~~g~~dg~v~a~D~~--tG~~~---w~~~~~~----------------~~~~~p--~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 87 PCRSSDGILYMGKKQDIWYVIDLL--TGEKQ---QTLSSAF----------------ADSLSP--STSLLYLGRTEYTIT 143 (369)
T ss_dssp SCC-----CCCCEEEEEEEEECCC---------------------------------------------EEEEEEEEEEE
T ss_pred ceEecCCEEEEEeCCCEEEEEECC--CCcEE---EEecCCC----------------cccccc--cCCEEEEEecCCEEE
Confidence 000135678888889987666654 45554 2232211 123445 455589999999999
Q ss_pred EEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCC---CEEEEEEcCCcEEEEecC
Q 001321 204 LWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSG---SILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 204 lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg---~~l~sg~~DG~I~lWd~~ 280 (1100)
.||..+++.+..+.... ..+.+. ..+. ..+++++.||.|..||..
T Consensus 144 a~d~~tG~~~W~~~~~~-------------------------------~~~~~~-~~~~~~~~~v~~~~~dg~v~a~d~~ 191 (369)
T 2hz6_A 144 MYDTKTRELRWNATYFD-------------------------------YAASLP-EDDVDYKMSHFVSNGDGLVVTVDSE 191 (369)
T ss_dssp CCCSSSSSCCCEEEEEE-------------------------------ECCBCC-CCCTTCCCCEEEEETSCEEEEECTT
T ss_pred EEECCCCCEEEeEeccc-------------------------------ccCccc-cCCccccceEEEECCCCEEEEEECC
Confidence 99999887543221100 000111 1221 457788999999999998
Q ss_pred CC
Q 001321 281 TT 282 (1100)
Q Consensus 281 ~~ 282 (1100)
++
T Consensus 192 tG 193 (369)
T 2hz6_A 192 SG 193 (369)
T ss_dssp TC
T ss_pred CC
Confidence 77
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.07 E-value=0.00041 Score=78.66 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=111.5
Q ss_pred CeEEEEEcCCCCEEEEEECC------CeEEEEeCCCceEEEeCCCC---CCE-EEEEEEeCCCEEEEEE-----------
Q 001321 37 TASILAFDHIQRLLAIATLD------GRIKVIGGDGIEGLLISPSQ---LPY-KNLEFLQNQGFLISIT----------- 95 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~d------G~I~vw~~~~~~~~~~~~h~---~~V-~~l~fs~d~~~Lls~s----------- 95 (1100)
....+...|++ +++++..+ |.|.++|....+++...+-. ..+ -.+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 45667888999 77766665 78999999877777555422 112 2477899999888874
Q ss_pred --------CCCcEEEEEcCCCceeeeeecC---CCeEEEEE--ecCCCEEEEEeC------CCcEEEEEEecCCCeeeee
Q 001321 96 --------NDNEIQVWSLESRSLACCLKWE---SNITAFSV--ISGSHFMYIGDE------NGLMSVIKYDADEGKLFQL 156 (1100)
Q Consensus 96 --------~d~~I~vWd~~s~~~l~~~~~~---~~Vt~~~~--s~~~~~l~~G~~------dG~V~Iw~~d~~~~~l~~~ 156 (1100)
.+++|.+||+.+++++.++... .....+.| +|++++++++++ +++|.+|.++. +.+...
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~ 295 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAE 295 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEE
Confidence 3789999999999888887654 23445555 999999999885 56888888874 444321
Q ss_pred -ceeecccccccccC-CCC---CCCCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEccC
Q 001321 157 -PYNISADALSEKAG-FPL---LSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSE 209 (1100)
Q Consensus 157 -~~~i~~~~~~~~~~-~~~---~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~ 209 (1100)
...++.......+. .+. .....+..|.++| +|++|+++.. .+.|.+||+..
T Consensus 296 ~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 296 KVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT--TSCEEEEEETTTTEEEEEECSS
T ss_pred EEEeCCCccccccccccccccccCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEecC
Confidence 01223211100000 000 0014578888977 7887777776 56999999863
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.06 E-value=0.00074 Score=71.90 Aligned_cols=223 Identities=10% Similarity=0.047 Sum_probs=134.6
Q ss_pred ccccceeeeecCCCCC--eEEEEEcCCCCEEEEEEC---CCeEEEEeCCCceEEEeC--CCCCCEEEEEEEeCCCEEEEE
Q 001321 22 ADLNLRIAVHYGIPAT--ASILAFDHIQRLLAIATL---DGRIKVIGGDGIEGLLIS--PSQLPYKNLEFLQNQGFLISI 94 (1100)
Q Consensus 22 ~~~~~~~~~~~G~~~~--v~~la~sp~~~lLA~gs~---dG~I~vw~~~~~~~~~~~--~h~~~V~~l~fs~d~~~Lls~ 94 (1100)
+.+..+.+..|-|+.. ..-|+|+|++ .|.+++. ++.|+++|....+++... +...-...+.+. +.+|..+
T Consensus 5 ~~~~~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~ 81 (266)
T 2iwa_A 5 RVYIVEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQV 81 (266)
T ss_dssp CEEEEEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEE
T ss_pred CccCceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEE
Confidence 3455666777766654 5789999986 5555553 589999999777666443 222222344444 5566655
Q ss_pred E-CCCcEEEEEcCCCceeeeeecC-CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 95 T-NDNEIQVWSLESRSLACCLKWE-SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 95 s-~d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
+ .++.+.++|..+.+++..+... .. ...+.+++++++++..++.| +.+|..+.+.... ++-....+ +
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l--~viD~~t~~v~~~---I~Vg~~~~----p 150 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSIL--YEIDPHTFKLIKK---HNVKYNGH----R 150 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEE--EEECTTTCCEEEE---EECEETTE----E
T ss_pred EecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeE--EEEECCCCcEEEE---EEECCCCc----c
Confidence 5 4789999999999999888554 32 23455678888888877755 5555555554432 32111000 0
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCc
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKE 251 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~ 251 (1100)
...+..+.|. +|. +++.. .++.|.+-|..+++++....-.++.-. ...........
T Consensus 151 ---~~~~nele~~---dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~----------------~~~~~~~~~~v 207 (266)
T 2iwa_A 151 ---VIRLNELEYI---NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKK----------------LIDEGFRDIDV 207 (266)
T ss_dssp ---CCCEEEEEEE---TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHH----------------HHHTTCTTCCC
T ss_pred ---cccceeEEEE---CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccc----------------cccccccccCc
Confidence 0236677774 464 55444 578999999999988765432100000 00000000235
Q ss_pred eEEEEEecCCCCEEE-EEEcCCcEEEEecCCC
Q 001321 252 ISALCWASSSGSILA-VGYIDGDILLWNTSTT 282 (1100)
Q Consensus 252 V~sl~w~spdg~~l~-sg~~DG~I~lWd~~~~ 282 (1100)
...++|. |+++.++ ++...+.|..-++...
T Consensus 208 ~nGIa~~-~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 208 LNGIAWD-QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEEE-TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred eEEEEEc-CCCCEEEEECCCCCeEEEEEEecc
Confidence 6789986 8887555 5556788888887543
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.06 E-value=0.00044 Score=85.14 Aligned_cols=188 Identities=10% Similarity=0.052 Sum_probs=106.1
Q ss_pred ccCCCCcEEEEEecCC-------------------cEEEeeCCCCceeEEeeeccceeeeeecCCCCCeeEEEEeeCC--
Q 001321 490 KCHSVDRVYLAGYHDG-------------------SVRIWDATYPVFKLICALDAEVQGIEVAGSRAPVSTLSFCFIN-- 548 (1100)
Q Consensus 490 ~~s~~~~~l~Tg~~DG-------------------tIriWd~~~~~l~~~~~l~~~~~~~~l~~h~~~Vt~lafspd~-- 548 (1100)
.+.+++.++..+..++ +|..+|..++...-.+.....-. -+... ......+....+|
T Consensus 249 ~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~-wd~~~-~~~p~l~~~~~dG~~ 326 (677)
T 1kb0_A 249 TFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN-WDYTS-TQPMILADIKIAGKP 326 (677)
T ss_dssp EEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC-SCCCC-CSCCEEEEEEETTEE
T ss_pred eEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc-ccccc-CCCcEEEecccCCcE
Confidence 5666677777776664 58999999888664333211000 00001 1223334555677
Q ss_pred -CeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcce-----------eEEEEeecCcC--eEEEEEcCC
Q 001321 549 -SSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISL-----------CRAVFSLVNSP--VRALQFTSS 614 (1100)
Q Consensus 549 -~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~h~~~--VtsLafSp~ 614 (1100)
..|++++.+|.|+++|..+...-....+...+ -...+. ..+-. ....+.+..+. =..++|+|+
T Consensus 327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~ 403 (677)
T 1kb0_A 327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQ 403 (677)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETT
T ss_pred eeEEEEECCCCEEEEEECCCCCEeccccccccC--cccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCC
Confidence 68899999999999998776321111111100 000000 00000 00000000000 025788998
Q ss_pred CCEEEEEeC-------------------------------------------CceEEEEecCCceEEEEeecCCCCCCCe
Q 001321 615 GAKLAVGFE-------------------------------------------CGRVAVLDMNLLSVLFFTDDISGSSSPI 651 (1100)
Q Consensus 615 g~~LavGs~-------------------------------------------dG~V~vwD~~~~~~~~~~~~~~~~~~~V 651 (1100)
+.++.++.. .|.|..||+.+++++++... ..++
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~ 479 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPW 479 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCC
Confidence 888877643 27899999999999987654 2222
Q ss_pred EEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCccccCC
Q 001321 652 ISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSENMISSS 708 (1100)
Q Consensus 652 ~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~~l~~~ 708 (1100)
.+..+... ..++|+++.||.+.+||..+|+.+.+-
T Consensus 480 ~~g~~~~~----------------------g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 480 NGGTLTTA----------------------GNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp CCCEEEET----------------------TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCcceEeC----------------------CCEEEEECCCCcEEEEECCCCceeeee
Confidence 22223322 245888999999999999999987654
No 240
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.04 E-value=3.3e-06 Score=73.86 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHh
Q 001321 1029 RLRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1092 (1100)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1100)
....+.+|+.+ -.++-......-+++.||||||+.|.+||++|+++|+.|..-|++|.++|
T Consensus 28 ~~d~l~~vq~e---ldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkm 88 (96)
T 1sfc_A 28 SNRRLQQTQAQ---VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 88 (96)
T ss_dssp CSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556655 33456788899999999999999999999999999999999999998875
No 241
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=98.03 E-value=3.8e-06 Score=67.59 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHh
Q 001321 1045 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1092 (1100)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1100)
++-......-+++.||||||+.|.+||++|+++|+.|..-|++|.++|
T Consensus 15 ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 62 (63)
T 1n7s_A 15 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345778889999999999999999999999999999999999999886
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.03 E-value=0.0011 Score=71.21 Aligned_cols=194 Identities=11% Similarity=-0.019 Sum_probs=121.3
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCceEEEeC-CCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeee
Q 001321 37 TASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACC 113 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~ 113 (1100)
.+..++|+|+++.|.++. .++.|.+++.++....... ..-.....+++.+++++|..++. .+.|.++|+........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 577899999776666655 4689999999765433222 22246789999997777776664 67899999976543322
Q ss_pred eecC-CCeEEEEEecCCCEEEEEeCC---CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 114 LKWE-SNITAFSVISGSHFMYIGDEN---GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 114 ~~~~-~~Vt~~~~s~~~~~l~~G~~d---G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.... .....++++|++.+|++.+.. +.|.+++++. ...... .... .....++++.| +
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~---~~~~------------~~~P~gia~d~--~ 177 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRIL---AQDN------------LGLPNGLTFDA--F 177 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEE---ECTT------------CSCEEEEEEET--T
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEEE---EECC------------CCCCcEEEEcC--C
Confidence 2222 467899999988888887754 5565555442 221110 1111 14578999977 4
Q ss_pred CCEEEEEEc-CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 190 GNRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 190 g~~ll~~~~-dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
+.+|+++.. .+.|.++|+.+......... ......++. ++..|+.+
T Consensus 178 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------------------------------~~~P~gi~~---d~~~lyva 224 (267)
T 1npe_A 178 SSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------------------------LQYPFAVTS---YGKNLYYT 224 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTEEEEEEEEEC------------------------------CCSEEEEEE---ETTEEEEE
T ss_pred CCEEEEEECCCCEEEEEecCCCceEEEecC------------------------------CCCceEEEE---eCCEEEEE
Confidence 555665554 56889999876544332211 112345552 24445544
Q ss_pred E-cCCcEEEEecCCC
Q 001321 269 Y-IDGDILLWNTSTT 282 (1100)
Q Consensus 269 ~-~DG~I~lWd~~~~ 282 (1100)
. .++.|..+|..++
T Consensus 225 ~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 225 DWKTNSVIAMDLAIS 239 (267)
T ss_dssp ETTTTEEEEEETTTT
T ss_pred ECCCCeEEEEeCCCC
Confidence 4 5678999988765
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.02 E-value=0.00069 Score=79.60 Aligned_cols=212 Identities=11% Similarity=0.094 Sum_probs=130.1
Q ss_pred CCCCEEEEEECC-CeEEEEeCCCceEEE--eCCCCCCEEEEEE-E-eCCCEEEEEE------------------CCCcEE
Q 001321 45 HIQRLLAIATLD-GRIKVIGGDGIEGLL--ISPSQLPYKNLEF-L-QNQGFLISIT------------------NDNEIQ 101 (1100)
Q Consensus 45 p~~~lLA~gs~d-G~I~vw~~~~~~~~~--~~~h~~~V~~l~f-s-~d~~~Lls~s------------------~d~~I~ 101 (1100)
|||++|.+...+ ++|.+.|++..++.- ..+.......++| . |+++++++.+ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 489999997765 689999998877554 5666667889998 5 9999998885 245799
Q ss_pred EEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCC---------------cEEEEEEecC-----CCeeee--ecee
Q 001321 102 VWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---------------LMSVIKYDAD-----EGKLFQ--LPYN 159 (1100)
Q Consensus 102 vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG---------------~V~Iw~~d~~-----~~~l~~--~~~~ 159 (1100)
++|.++.+++....-.+...-++++|+++|+++.+.+. .|.|.++... .++... .-..
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999999988886656777889999999999998653 2333332210 000000 0000
Q ss_pred ecccccc-cc--cCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccCCEEEE--EecCCcccccccccCCCCC
Q 001321 160 ISADALS-EK--AGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSEAQIIF--VGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 160 i~~~~~~-~~--~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~--~~~~~~~~~~~~l~~~~~g 233 (1100)
+...... +. ...+. .....++.++| +|++++++. .+..|.++|+.+.+... .+...+.... ++.
T Consensus 259 ID~~~~~~~~~~~~Ipv--g~~PhGv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~----- 328 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI--ANNPHGCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPE----- 328 (595)
T ss_dssp EECSGGGCCSSEEEEEE--ESSCCCEEECT--TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCB-----
T ss_pred EeCcccCCceeEEEEec--CCCceEEEEcC--CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcC-----
Confidence 1110000 00 00000 13567888977 798776655 45689999998652100 0000000000 000
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
-......++|. |+|...++...|+.|..||+..
T Consensus 329 --------------vG~gP~h~aF~-~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 --------------LGLGPLHTAFD-GRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp --------------CCSCEEEEEEC-TTSEEEEEETTTTEEEEEEHHH
T ss_pred --------------CCCCcceEEEC-CCCeEEEEEecCCcEEEEEhhH
Confidence 02335556764 9995455677899999999865
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.99 E-value=0.00044 Score=72.76 Aligned_cols=214 Identities=9% Similarity=0.092 Sum_probs=133.6
Q ss_pred cccccceeeeecCCCCCe--EEEEEcCCCCEEEEEECCC--eEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE-
Q 001321 21 AADLNLRIAVHYGIPATA--SILAFDHIQRLLAIATLDG--RIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT- 95 (1100)
Q Consensus 21 ~~~~~~~~~~~~G~~~~v--~~la~sp~~~lLA~gs~dG--~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s- 95 (1100)
+..+.++.+..|-|+... -.|.|+ ++.+..+.+.+| .|+++|....+++....-...+-.....+++..|....
T Consensus 26 ~~~~~~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 26 IPIYDYQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp CCEEEEEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES
T ss_pred CcccceEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe
Confidence 455677888888887776 679999 676666666666 99999998777664443333333322333445565555
Q ss_pred CCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 96 NDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 96 ~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.++.+.++|..+.+++.++..++.=..+ .++++.|++.+.++. ||.+|..+.+.... ..+..+. +.
T Consensus 105 ~~~~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~--i~~iDp~T~~v~~~-I~V~~~g--~~------- 170 (262)
T 3nol_A 105 KNGLGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPV--LRFLDPESLTPVRT-ITVTAHG--EE------- 170 (262)
T ss_dssp SSSEEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSE--EEEECTTTCSEEEE-EECEETT--EE-------
T ss_pred eCCEEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCe--EEEEcCCCCeEEEE-EEeccCC--cc-------
Confidence 4889999999999999998765532333 356788888876664 56677766555532 1221110 00
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
...+..+.| . +|..++..+.+..|.+.|..+++++....-.++.-. . + ...........+
T Consensus 171 ~~~lNELe~--~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~------------~-~----~~~~~~~vlNGI 230 (262)
T 3nol_A 171 LPELNELEW--V-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE------------A-G----PLPSPIDVLNGI 230 (262)
T ss_dssp CCCEEEEEE--E-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG------------S-C----SCCSSCCCEEEE
T ss_pred ccccceeEE--E-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc------------c-c----cccCcCCceEEE
Confidence 023445666 3 566444445678999999999998776543111100 0 0 000113456789
Q ss_pred EEecCCCCEEEEEEc
Q 001321 256 CWASSSGSILAVGYI 270 (1100)
Q Consensus 256 ~w~spdg~~l~sg~~ 270 (1100)
||. |+++.|++.+.
T Consensus 231 A~d-p~~~~lfVTGK 244 (262)
T 3nol_A 231 AWD-KEHHRLFVTGK 244 (262)
T ss_dssp EEE-TTTTEEEEEET
T ss_pred EEc-CCCCEEEEECC
Confidence 986 88887777765
No 245
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.99 E-value=0.07 Score=64.49 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=101.1
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCce--EEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCcee
Q 001321 36 ATASILAFDHIQRLLAIATL-DGRIKVIGGDGIE--GLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLA 111 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~--~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l 111 (1100)
..+..++|++.+..|..... .++|..++.++.. .......-.....|++.+.++.|..++. .+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 35789999998887777665 5899999987652 2222222246889999997777777664 678999999876543
Q ss_pred eee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 112 CCL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 112 ~~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
... ..-.....++++|...+|+..+....-+|+..+.+....... +... .....+|++.| ++
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l---~~~~------------~~~P~Glald~--~~ 182 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSE------------IYWPNGLTLDY--EE 182 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS------------CSSEEEEEEET--TT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE---EeCC------------CCCCcEEEEEc--cC
Confidence 333 223457799999998889888753222456655443222211 2111 15678999976 34
Q ss_pred CEEEEEEc-CCEEEEEEccCCEE
Q 001321 191 NRVLIAYE-NALVILWDVSEAQI 212 (1100)
Q Consensus 191 ~~ll~~~~-dg~V~lwdl~~~~~ 212 (1100)
.+|+.+-. .+.|...|++....
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~~ 205 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTNR 205 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCEE
T ss_pred CEEEEEeCCCCeEEEecCCCCcc
Confidence 45666654 45677777766543
No 246
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.97 E-value=0.13 Score=66.72 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=88.9
Q ss_pred cCCCCEEEEEECCCeEEEEeCCC--ceEEEeCCCCCCEEEEEEEe----CCCEEEEEECCCcEEE--EEcCCCc--eeee
Q 001321 44 DHIQRLLAIATLDGRIKVIGGDG--IEGLLISPSQLPYKNLEFLQ----NQGFLISITNDNEIQV--WSLESRS--LACC 113 (1100)
Q Consensus 44 sp~~~lLA~gs~dG~I~vw~~~~--~~~~~~~~h~~~V~~l~fs~----d~~~Lls~s~d~~I~v--Wd~~s~~--~l~~ 113 (1100)
+|...-|+++. ..++.||..+. .+.+...+--+.|.+++-.+ +..+|+.++.++.+.+ ||-.... +.+.
T Consensus 43 ~~~~~~Lvvak-~~~Lel~~~~~~~L~~v~~~~l~G~I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~ 121 (1158)
T 3ei3_A 43 SAEDLNLLIAK-NTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITR 121 (1158)
T ss_dssp CSSCCEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEE
T ss_pred CCCccEEEEec-CCEEEEEEEcccceEEEEEEEcccEEEEEEEEcCCCCCceEEEEEeCCceEEEEEEcCCCCceeEEEE
Confidence 46667777776 47999998743 34444444556788887644 3368888888888766 5544332 2221
Q ss_pred ee--cC---C----CeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 114 LK--WE---S----NITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 114 ~~--~~---~----~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
.. .. + .-.-++++|.++.+++..-++.+.|+-++.+...+. .+.++-.. ..|.+++|
T Consensus 122 ~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~l~--~~~~~l~~------------~~v~d~~f 187 (1158)
T 3ei3_A 122 AHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELK--AFNIRLEE------------LHVIDVKF 187 (1158)
T ss_dssp EEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTTCC--CEEEECSC------------CCEEEEEE
T ss_pred eccccccCccccCCCCCEEEEcCCCCEEEEEeccCEEEEEEecCCccccc--cccccccc------------ceEEEEEE
Confidence 11 11 1 123788999999999999999888888875333232 23333211 45677776
Q ss_pred ccCCCCCEEEEEEcCC---EEEEEEccC
Q 001321 185 HPNSSGNRVLIAYENA---LVILWDVSE 209 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg---~V~lwdl~~ 209 (1100)
-.....-.+++-|.|. .+..|.++-
T Consensus 188 L~g~~~P~~A~Ly~d~~~~~l~~y~ldl 215 (1158)
T 3ei3_A 188 LYGCQAPTICFVYQDPQGRHVKTYEVSL 215 (1158)
T ss_dssp CSSCSSCEEEEEEEETTEEEEEEEEEET
T ss_pred ecCCCCcEEEEEEECCCCCEEEEEEEEc
Confidence 3222222366656543 334454443
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.93 E-value=0.00044 Score=76.58 Aligned_cols=107 Identities=12% Similarity=0.010 Sum_probs=63.5
Q ss_pred CCeeEEEEeeCCCeEEEEecCceEEEEEecCCCCCcceeeeccCCCceeeccCCCcceeEEEEeecCcCeEEEEEcCCCC
Q 001321 537 APVSTLSFCFINSSLAVGNEFGLVYIYNLNGSLDAKNFLFVLETKSEVHALPEGKISLCRAVFSLVNSPVRALQFTSSGA 616 (1100)
Q Consensus 537 ~~Vt~lafspd~~~Lasg~~dG~V~lw~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~VtsLafSp~g~ 616 (1100)
..+.++.+++++...+ ++.+|.+..++.... .+..+......+.++.+.+++
T Consensus 215 ~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g~--------------------------~~~~~~~~~~~~~~~~~~~~g- 266 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYV-TSLDGHLYAINPDGT--------------------------EKWRFKTGKRIESSPVIGNTD- 266 (330)
T ss_dssp CCCSCCEECTTSCEEE-EETTTEEEEECTTSC--------------------------EEEEEECSSCCCSCCEECTTS-
T ss_pred cceeceEECCCCeEEE-EcCCCeEEEECCCCC--------------------------EeEEeeCCCCccccceEcCCC-
Confidence 4577778887775544 666676666653221 112222233334455666667
Q ss_pred EEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEE
Q 001321 617 KLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISI 696 (1100)
Q Consensus 617 ~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v 696 (1100)
.|.+|+.+|.|..+|. +++.++.... ....+.++.... ...|++|+.+|.+.+
T Consensus 267 ~l~v~t~~ggl~~~d~-~g~~~~~~~~---~~~~~~~~~~d~-----------------------~g~l~~gt~~G~~~~ 319 (330)
T 3hxj_A 267 TIYFGSYDGHLYAINP-DGTEKWNFET---GSWIIATPVIDE-----------------------NGTIYFGTRNGKFYA 319 (330)
T ss_dssp CEEEECTTCEEEEECT-TSCEEEEEEC---SSCCCSCCEECT-----------------------TCCEEEECTTSCEEE
T ss_pred eEEEecCCCCEEEECC-CCcEEEEEEc---CCccccceEEcC-----------------------CCEEEEEcCCCeEEE
Confidence 4788888988999996 5666554433 122233333321 123899999999998
Q ss_pred Ee
Q 001321 697 VG 698 (1100)
Q Consensus 697 ~d 698 (1100)
..
T Consensus 320 ~~ 321 (330)
T 3hxj_A 320 LF 321 (330)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 248
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.91 E-value=1e-05 Score=70.17 Aligned_cols=47 Identities=28% Similarity=0.450 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHh
Q 001321 1046 ASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1092 (1100)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1100)
.-......-+|+.||||||+.|.+||++|+++|+.|...|++|-++|
T Consensus 17 vk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 17 VVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788899999999999999999999999999999999998886
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.88 E-value=0.0043 Score=68.56 Aligned_cols=154 Identities=15% Similarity=0.085 Sum_probs=98.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-CC-------------------CCCEEEEEEEeCCCEEEEEEC
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PS-------------------QLPYKNLEFLQNQGFLISITN 96 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-~h-------------------~~~V~~l~fs~d~~~Lls~s~ 96 (1100)
.+..++++++++++.+++.++.|..|+..+....... .. ......+++.++.+.|+.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4677899999998889999999999998664433211 10 124788999984456777766
Q ss_pred CCcEEEEEcCCCceeeee--ec---CCCeEEEEEec-CCCEEEEEeCC----------------CcEEEEEEecCCCeee
Q 001321 97 DNEIQVWSLESRSLACCL--KW---ESNITAFSVIS-GSHFMYIGDEN----------------GLMSVIKYDADEGKLF 154 (1100)
Q Consensus 97 d~~I~vWd~~s~~~l~~~--~~---~~~Vt~~~~s~-~~~~l~~G~~d----------------G~V~Iw~~d~~~~~l~ 154 (1100)
.+.|..+|..++.+.... .. ......+++++ ++.+ ++++.. ..=.|+.++...+.+.
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV-YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCE-EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEE-EEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 667999998876432221 11 13468899999 7764 444322 1124566666555544
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccC
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE 209 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~ 209 (1100)
.. ... . .....|+++| ++++|+++. .++.|.+|++.+
T Consensus 179 ~~---~~~-~------------~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 179 LL---LKE-L------------HVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EE---EEE-E------------SCCCEEEECT--TSSEEEEEEGGGTEEEEEESSS
T ss_pred Ee---ccC-C------------ccCcceEECC--CCCEEEEEeCCCCeEEEEECCC
Confidence 21 110 0 3356788976 677666664 457888998875
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.88 E-value=0.00044 Score=78.41 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=126.2
Q ss_pred EEc--CCCCEEEEEEC-CCeEEEEeCCCc----eEEEeCC-------CC-CCEEEEEEEeCCCEEEEEECC------CcE
Q 001321 42 AFD--HIQRLLAIATL-DGRIKVIGGDGI----EGLLISP-------SQ-LPYKNLEFLQNQGFLISITND------NEI 100 (1100)
Q Consensus 42 a~s--p~~~lLA~gs~-dG~I~vw~~~~~----~~~~~~~-------h~-~~V~~l~fs~d~~~Lls~s~d------~~I 100 (1100)
+++ +++++|.+... +++|+|+|.... ++.-..+ .. ..-..+..+|+| ..+++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 78888777654 589999998422 2221111 11 123456788998 66666655 789
Q ss_pred EEEEcCCCceeeeeecC----CCeEEEEEecCCCEEEEEe-------------------CCCcEEEEEEecCCCeeeeec
Q 001321 101 QVWSLESRSLACCLKWE----SNITAFSVISGSHFMYIGD-------------------ENGLMSVIKYDADEGKLFQLP 157 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~~~~----~~Vt~~~~s~~~~~l~~G~-------------------~dG~V~Iw~~d~~~~~l~~~~ 157 (1100)
.+.|..+.+++...... .--..+.++|++++|++.. ....|.+|+++. +++.+.
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~t- 243 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHS- 243 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEE-
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEeeE-
Confidence 99999999999888533 1234578899999999885 367899998874 455542
Q ss_pred eeecccccccccCCCCCCCCCeEEEEe--ccCCCCCEEEEEEc------CCEEEEEEccCCEEEEEecCCcccccccccC
Q 001321 158 YNISADALSEKAGFPLLSHQPVVGVLP--HPNSSGNRVLIAYE------NALVILWDVSEAQIIFVGGGKDLQLKDGVVD 229 (1100)
Q Consensus 158 ~~i~~~~~~~~~~~~~~~~~~V~sv~f--~P~~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~ 229 (1100)
+.+.... .....|.| +| ++++++++++ ++.|.+|..+.+........ .+.
T Consensus 244 I~vg~~g------------~~P~~i~f~~~P--dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI-------di~- 301 (462)
T 2ece_A 244 LTLGEEN------------RMALELRPLHDP--TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI-------EIP- 301 (462)
T ss_dssp EESCTTE------------EEEEEEEECSST--TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE-------EEC-
T ss_pred EecCCCC------------CccceeEeeECC--CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE-------eCC-
Confidence 2232111 23556655 77 7887877775 56888888776643221100 000
Q ss_pred CCCCCCCccccCCCCCC---CC-CCceEEEEEecCCCCEEEEEEc-CCcEEEEecCCC
Q 001321 230 SPSEGDSTFLEGISEHQ---PE-EKEISALCWASSSGSILAVGYI-DGDILLWNTSTT 282 (1100)
Q Consensus 230 ~~~g~~~~~g~~~~~~~---~~-~~~V~sl~w~spdg~~l~sg~~-DG~I~lWd~~~~ 282 (1100)
..+..+ .+.... .. ......+.. ++||++|+++.. .++|.++|+.+.
T Consensus 302 --~~~v~~---~lp~~~~~f~~~~~~pa~I~l-S~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 302 --AEPLEG---NLPEILKPFKAVPPLVTDIDI-SLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp --CEECCS---SCCGGGGGGTEECCCCCCEEE-CTTSCEEEEEETTTTEEEEEECSST
T ss_pred --Cccccc---cccccccccccCCCceeEEEE-CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 000000 000000 00 123455664 699999988765 678999998643
No 251
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.84 E-value=0.0034 Score=66.35 Aligned_cols=214 Identities=15% Similarity=0.133 Sum_probs=133.4
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCceEEEe--CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC
Q 001321 32 YGIPATASILAFDHIQR-LLAIATLDGRIKVIGGDGIEGLLI--SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 32 ~G~~~~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~~~~~~~--~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
-|+...++.++|+|+++ +.|+...++.|...+.++. ++.. .........|++.+++.++++.-.++.+.++++...
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 37888899999999765 5556777899999999843 3322 233357889999998876666556778999988655
Q ss_pred ce---eeeee-------cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccc-cccccCCCCCCCC
Q 001321 109 SL---ACCLK-------WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADA-LSEKAGFPLLSHQ 177 (1100)
Q Consensus 109 ~~---l~~~~-------~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~-~~~~~~~~~~~~~ 177 (1100)
.. +.... .......++++|.++.|+++.+.....||.++...... .+.+..+. +... ....
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~---~l~i~~~~~~~~~-----~~~~ 173 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN---ELHISKDKALQRQ-----FTLD 173 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS---CCEEEECHHHHHT-----CCSS
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC---ceeeecchhhccc-----cccC
Confidence 42 22222 12346899999999999999888778888887210000 01121110 0000 1124
Q ss_pred CeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEE
Q 001321 178 PVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCW 257 (1100)
Q Consensus 178 ~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w 257 (1100)
.+.+++++|. .+..++.+..+..+.++|.... ++..+.- . . +..| + ...-..-..+++
T Consensus 174 d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L---------~---~---g~~~--l---~~~~~qpEGia~ 231 (255)
T 3qqz_A 174 DVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSL---------T---K---GSRG--L---SHNIKQAEGVAM 231 (255)
T ss_dssp CCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEEC---------S---T---TGGG--C---SSCCCSEEEEEE
T ss_pred CceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEc---------C---C---ccCC--c---ccccCCCCeeEE
Confidence 5789999996 4665566666778889998765 4443311 0 0 0000 0 000234567897
Q ss_pred ecCCCCEEEEEEcCCcEEEEe
Q 001321 258 ASSSGSILAVGYIDGDILLWN 278 (1100)
Q Consensus 258 ~spdg~~l~sg~~DG~I~lWd 278 (1100)
. ++|+ |+..++.+.+..+.
T Consensus 232 d-~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 232 D-ASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp C-TTCC-EEEEETTTEEEEEE
T ss_pred C-CCCC-EEEEcCCceEEEEE
Confidence 5 9997 66667877555543
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.76 E-value=0.013 Score=71.80 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=66.9
Q ss_pred CCEEEEEECCCcEEEEEcCCCceeeeeecCCCe------------EEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001321 88 QGFLISITNDNEIQVWSLESRSLACCLKWESNI------------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 88 ~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~V------------t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~ 155 (1100)
+..|+.++.++.|..+|..+++.+..+...... ..+++ .+..+++++.+|.| +-+|..++++.-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l--~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRL--IALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEE--EEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEE--EEEECCCCCEee
Confidence 467888888899999999999998877443211 11222 35688999999966 445565677663
Q ss_pred eceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 156 LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 156 ~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
++.......... ....++. . ++ +++++.. +|.|..+|..+++++-.+
T Consensus 142 ---~~~~~~~~~~~~---~~~~P~v---~----~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 142 ---SQQTTDPAKPYS---ITGAPRV---V----KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp ---EEECSCTTSSCB---CCSCCEE---E----TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ---eeccCCCCCcce---ecCCCEE---E----CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 232111000000 0001211 1 33 4666654 589999999999887654
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.75 E-value=0.0072 Score=62.99 Aligned_cols=214 Identities=13% Similarity=0.130 Sum_probs=129.4
Q ss_pred ccccceeeeecCCCCCeE--EEEEcCCCCEEEEEECC--CeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE-C
Q 001321 22 ADLNLRIAVHYGIPATAS--ILAFDHIQRLLAIATLD--GRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT-N 96 (1100)
Q Consensus 22 ~~~~~~~~~~~G~~~~v~--~la~sp~~~lLA~gs~d--G~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s-~ 96 (1100)
..+.++.+..|-|+...- -|.|++ +.+..+.+.+ ..|+++|....+++....-...+-.......+.+|...+ .
T Consensus 5 ~~~~~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~ 83 (243)
T 3mbr_X 5 PTQGYRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR 83 (243)
T ss_dssp CBCCEEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred cccceEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence 456778888888876643 689997 5555554444 499999998777765443333232222233345555554 5
Q ss_pred CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCC
Q 001321 97 DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 97 d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
++.+.++|..+.+++.++..++.=..++ +++..|++++.++.| +.+|..+.+.... ..+..+. .. .
T Consensus 84 ~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l--~~iDp~t~~~~~~-I~V~~~g--~~-------~ 149 (243)
T 3mbr_X 84 NHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVI--RKLDPDTLQQVGS-IKVTAGG--RP-------L 149 (243)
T ss_dssp SSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEE--EEECTTTCCEEEE-EECEETT--EE-------C
T ss_pred CCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeE--EEEeCCCCeEEEE-EEEccCC--cc-------c
Confidence 8899999999999999987665444444 567888888877755 5566655555432 2222111 00 0
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALC 256 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~ 256 (1100)
..+..+.| . +|..++..+.+..|.+.|..+++++....-.++.-. ... . ..........++
T Consensus 150 ~~lNeLe~--~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~-------~~~-------~--~~~~~~vlNGIA 210 (243)
T 3mbr_X 150 DNLNELEW--V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD-------ADA-------L--TDSTNDVLNGIA 210 (243)
T ss_dssp CCEEEEEE--E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT-------TTS-------C--CCTTSSCEEEEE
T ss_pred ccceeeEE--e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc-------ccc-------c--cCCcCCceEEEE
Confidence 33555666 2 565344444677999999999998776543111100 000 0 001134567899
Q ss_pred EecCCCCEEEEEEc
Q 001321 257 WASSSGSILAVGYI 270 (1100)
Q Consensus 257 w~spdg~~l~sg~~ 270 (1100)
|. |+++.|++.+.
T Consensus 211 ~d-~~~~~lfVTGK 223 (243)
T 3mbr_X 211 FD-AEHDRLFVTGK 223 (243)
T ss_dssp EE-TTTTEEEEEET
T ss_pred Ec-CCCCEEEEECC
Confidence 87 88777666654
No 254
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=97.74 E-value=3.1e-05 Score=64.44 Aligned_cols=49 Identities=27% Similarity=0.596 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001321 1047 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1099 (1100)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1100)
-......=+++.||||||+.|.+||++|+++|..|..-|+.|-++| ||+
T Consensus 21 ~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~----ww~ 69 (74)
T 2nps_A 21 IDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQM----WWR 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC-
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4567777889999999999999999999999999999998887665 774
No 255
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.71 E-value=0.19 Score=60.81 Aligned_cols=198 Identities=14% Similarity=0.009 Sum_probs=122.7
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceee
Q 001321 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLAC 112 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~ 112 (1100)
..+..++|++....|.... .+++|+.++.++........ .-.....|++.+.++.|..++. .+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4688999999877776654 46899999987654332222 2235678999887777766664 5789999997764333
Q ss_pred ee-ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 113 CL-KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 113 ~~-~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
.. ..-.....++++|...+|+..+....-+|+..+.+....... +. . .....+|++.+ ++.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l---~~-~------------~~~P~GlalD~--~~~ 178 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL---VP-N------------VGRANGLTIDY--AKR 178 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---EC-S------------CSSEEEEEEET--TTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE---EC-C------------CCCcceEEEcc--ccC
Confidence 33 223567899999998899988753222556655443333221 11 1 15688999966 455
Q ss_pred EEEEEEc-CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc
Q 001321 192 RVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1100)
Q Consensus 192 ~ll~~~~-dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~ 270 (1100)
+|+.+.. .+.|..+|+........... .....+++.+ . +..+++-..
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~~~~v~~~~------------------------------l~~P~glav~-~-~~ly~tD~~ 226 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGLNREVIADD------------------------------LPHPFGLTQY-Q-DYIYWTDWS 226 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEEC------------------------------CSCEEEEEEE-T-TEEEEEETT
T ss_pred EEEEEECCCCEEEEEcCCCCceEEeecc------------------------------CCCceEEEEE-C-CEEEEecCC
Confidence 5666654 45788888876533211111 1223456644 2 444444445
Q ss_pred CCcEEEEecCCCC
Q 001321 271 DGDILLWNTSTTA 283 (1100)
Q Consensus 271 DG~I~lWd~~~~~ 283 (1100)
.+.|...|..++.
T Consensus 227 ~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 227 RRSIERANKTSGQ 239 (628)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCEEEEEECCCCC
Confidence 7788888876664
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.70 E-value=0.054 Score=64.90 Aligned_cols=111 Identities=15% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCceeeeeecCCC--e----------EEEEEecCCCEEEEEeCCCcEEEEEEecCCCee
Q 001321 88 QGFLISITN-DNEIQVWSL-ESRSLACCLKWESN--I----------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKL 153 (1100)
Q Consensus 88 ~~~Lls~s~-d~~I~vWd~-~s~~~l~~~~~~~~--V----------t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l 153 (1100)
+..+..++. ++.|.-+|. .+++.+..+..... + ..+++ .+..+++++.++.| +-+|..++++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l--~alD~~tG~~ 137 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHL--LALDAKTGKI 137 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEE--EEEETTTCCE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEE--EEEECCCCCE
Confidence 356777777 789999999 89998877744321 0 11222 36789999999966 5566656776
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
.-. +.+..+.. ... ....++. . ++ +++++.. +|.|..+|..+++.+-.+
T Consensus 138 ~W~-~~~~~~~~--~~~---~~~~P~v---~----~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 138 NWE-VEVCDPKV--GST---LTQAPFV---A----KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEE-EECCCGGG--TCB---CCSCCEE---E----TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEE-ecCCCCCc--cce---eccCCEE---E----CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 632 22222110 000 0001111 1 34 4777765 789999999999876544
No 257
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.70 E-value=0.0011 Score=77.97 Aligned_cols=162 Identities=10% Similarity=0.014 Sum_probs=114.0
Q ss_pred CCeEEEEE-c-CCCCEEEEEEC------------------CCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEE
Q 001321 36 ATASILAF-D-HIQRLLAIATL------------------DGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISIT 95 (1100)
Q Consensus 36 ~~v~~la~-s-p~~~lLA~gs~------------------dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s 95 (1100)
..+..+++ + |+++++.++++ ++.+-++|.+..++.....-.+.-..++++|+|+++++.+
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEe
Confidence 46888998 5 99999999962 3689999998877765543322347788999999999888
Q ss_pred CCC--------------------------------------cEEEEEcCC--Cce-eeeeecCCCeEEEEEecCCCEEEE
Q 001321 96 NDN--------------------------------------EIQVWSLES--RSL-ACCLKWESNITAFSVISGSHFMYI 134 (1100)
Q Consensus 96 ~d~--------------------------------------~I~vWd~~s--~~~-l~~~~~~~~Vt~~~~s~~~~~l~~ 134 (1100)
.+. .|.|.|..+ ++. +..+.......++.++|+++++++
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence 543 478888887 444 556655667889999999999888
Q ss_pred Ee-CCCcEEEEEEecC----CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC
Q 001321 135 GD-ENGLMSVIKYDAD----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 135 G~-~dG~V~Iw~~d~~----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
.+ .+.+|.|++++.. ++++... ..+.. .. .-......++|+| +|..+++.+-++.|.+||+..
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~-~~v~~--------~v-~vG~gP~h~aF~~--dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPR-SAVVA--------EP-ELGLGPLHTAFDG--RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGG-GGEEE--------CC-BCCSCEEEEEECT--TSEEEEEETTTTEEEEEEHHH
T ss_pred eCCCCCeEEEEECcccccccccccCcc-cceEE--------Ec-CCCCCcceEEECC--CCeEEEEEecCCcEEEEEhhH
Confidence 77 4788988887742 1111100 00000 00 0115689999988 675556777899999999987
No 258
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.66 E-value=3e-06 Score=77.20 Aligned_cols=48 Identities=27% Similarity=0.459 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHh
Q 001321 1045 DASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1092 (1100)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1100)
+.-......-+|+.||||||+.|.+||++|+++|+.|.+.|++|.++|
T Consensus 44 eVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 44 EVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778889999999999999999999999999999999999988776
No 259
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.62 E-value=0.4 Score=62.08 Aligned_cols=133 Identities=10% Similarity=0.095 Sum_probs=79.5
Q ss_pred CeEEEEeCCCceEE-EeC-CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCcee--eeeecCCCeEEEEEecC----
Q 001321 57 GRIKVIGGDGIEGL-LIS-PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLA--CCLKWESNITAFSVISG---- 128 (1100)
Q Consensus 57 G~I~vw~~~~~~~~-~~~-~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l--~~~~~~~~Vt~~~~s~~---- 128 (1100)
..|++.+.+....+ ... +....|...+... .+++.++ ++.|.++++..+.+. .....+..|+|+++.+.
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~ 568 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSN 568 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSST
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCc
Confidence 34677776543223 232 3445677776554 3455554 788989888766432 33356688999999864
Q ss_pred --CCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEE
Q 001321 129 --SHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1100)
Q Consensus 129 --~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lw 205 (1100)
.+++++|.. |++|+|+.++..+ .+. ...++.. ..+.+|....-....+|++|-.||.+.-+
T Consensus 569 ~~s~~~aVg~~~d~tv~I~sL~~l~-~~~--~~~L~~~-------------~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 569 GLSPLCAIGLWTDISARILKLPSFE-LLH--KEMLGGE-------------IIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp TCCSEEEEEETTTTEEEEEETTTCC-EEE--EEECCSS-------------CCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred ccccEEEEEECCCCEEEEEECCCCC-eEE--EEECCCC-------------CCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 479999997 9999999987421 111 0123211 12333333211123468899999987666
Q ss_pred Ecc
Q 001321 206 DVS 208 (1100)
Q Consensus 206 dl~ 208 (1100)
.++
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 554
No 260
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.56 E-value=0.021 Score=60.65 Aligned_cols=167 Identities=12% Similarity=0.038 Sum_probs=103.8
Q ss_pred EEEeCCCCC--CEEEEEEEeCCCEEEEEEC---CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 001321 69 GLLISPSQL--PYKNLEFLQNQGFLISITN---DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMS 142 (1100)
Q Consensus 69 ~~~~~~h~~--~V~~l~fs~d~~~Lls~s~---d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~ 142 (1100)
++...+|.. -...|.|++++ +|..++. ++.|.++|+.+++.+..+..+.......+..+++.++++.. ++.|
T Consensus 11 vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v- 88 (266)
T 2iwa_A 11 VLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG- 88 (266)
T ss_dssp EEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE-
T ss_pred EEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE-
Confidence 444455654 36899999985 5555442 58999999999999988865543333333444677887775 5655
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccc
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~ 222 (1100)
+.+|..+.++... ++... ..-..+.+ +|.+++++..++.|.++|..+.++.....-.
T Consensus 89 -~viD~~t~~v~~~---i~~g~------------~~g~glt~----Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg--- 145 (266)
T 2iwa_A 89 -FIYDRRTLSNIKN---FTHQM------------KDGWGLAT----DGKILYGSDGTSILYEIDPHTFKLIKKHNVK--- 145 (266)
T ss_dssp -EEEETTTTEEEEE---EECCS------------SSCCEEEE----CSSSEEEECSSSEEEEECTTTCCEEEEEECE---
T ss_pred -EEEECCCCcEEEE---EECCC------------CCeEEEEE----CCCEEEEECCCCeEEEEECCCCcEEEEEEEC---
Confidence 5566655665532 43110 11133444 5666777777889999999998765443210
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
..+.. -..+..+.|. +|...+....++.|.+-|..+++
T Consensus 146 --------------~~~~p-------~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 146 --------------YNGHR-------VIRLNELEYI--NGEVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp --------------ETTEE-------CCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCC
T ss_pred --------------CCCcc-------cccceeEEEE--CCEEEEecCCCCeEEEEECCCCc
Confidence 00000 1235567765 67555555568899999998884
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.55 E-value=0.0033 Score=66.11 Aligned_cols=174 Identities=10% Similarity=0.071 Sum_probs=109.7
Q ss_pred cceeeeecCCCCCe--EEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-CCCCCEEEEEEEeCCCEEEEEE-CCCcE
Q 001321 25 NLRIAVHYGIPATA--SILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-PSQLPYKNLEFLQNQGFLISIT-NDNEI 100 (1100)
Q Consensus 25 ~~~~~~~~G~~~~v--~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-~h~~~V~~l~fs~d~~~Lls~s-~d~~I 100 (1100)
..+.+..|-|+... -.|.|+. +.+..+.+.+|.|+++|....+++... +...--..+.+..+ .|.... .++.+
T Consensus 42 ~~~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~--~Ly~ltw~~~~v 118 (268)
T 3nok_A 42 VAHIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE--RLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS--CEEEEESSSCEE
T ss_pred ceEEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC--EEEEEEccCCEE
Confidence 33566777666665 6788984 566666667789999999766554332 22111233555444 444443 58899
Q ss_pred EEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 101 QVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.++|..+.+++.++..+..-..++ +++++|++++.++.| +.+|..+.+.... ..+..+. +. ...+.
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l--~~iDp~T~~v~~~-I~V~~~g--~~-------v~~lN 184 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTML--TFHEPDGFALVGA-VQVKLRG--QP-------VELIN 184 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEE--EEECTTTCCEEEE-EECEETT--EE-------CCCEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEE--EEEcCCCCeEEEE-EEeCCCC--cc-------ccccc
Confidence 999999999999987665434444 567889998877755 6666666555532 2222111 00 13456
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~ 218 (1100)
.+.| . +|..++..+.+..|.+.|..+++++....-
T Consensus 185 eLe~--~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 185 ELEC--A-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEEE--E-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred ccEE--e-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 6777 3 565444444678999999999998776543
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.52 E-value=0.018 Score=59.95 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=109.3
Q ss_pred eEEEeCCCCC--CEEEEEEEeCCCEEEEEECC--CcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 001321 68 EGLLISPSQL--PYKNLEFLQNQGFLISITND--NEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMS 142 (1100)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~Lls~s~d--~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~ 142 (1100)
+++...+|.. -...|.|+++ ....+.+.. +.|+++|+.+++++.....+.......+...++.++.... ++.+
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v- 87 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG- 87 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE-
T ss_pred EEEEEcCCCCccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE-
Confidence 4555556654 5789999873 455555554 4899999999999999987776665555556777777764 5644
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccc
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~ 222 (1100)
|.+|..+.++... +..++ .-..+++ ++.+|+++..++.|.++|..+.+++....-.+
T Consensus 88 -~v~D~~tl~~~~t-i~~~~---------------~Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-- 144 (243)
T 3mbr_X 88 -FVYDLATLTPRAR-FRYPG---------------EGWALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-- 144 (243)
T ss_dssp -EEEETTTTEEEEE-EECSS---------------CCCEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEE--
T ss_pred -EEEECCcCcEEEE-EeCCC---------------CceEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc--
Confidence 5666655666543 22221 1235554 45568887788899999999987654432100
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~ 284 (1100)
.+.. -..+..+.|. +|...+....+..|.+.|..+++.
T Consensus 145 ---------------~g~~-------~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 145 ---------------GGRP-------LDNLNELEWV--NGELLANVWLTSRIARIDPASGKV 182 (243)
T ss_dssp ---------------TTEE-------CCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBE
T ss_pred ---------------CCcc-------cccceeeEEe--CCEEEEEECCCCeEEEEECCCCCE
Confidence 0000 2345567765 677666666788999999998853
No 263
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.52 E-value=3.3e-05 Score=87.86 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=78.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccc
Q 001321 87 NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALS 166 (1100)
Q Consensus 87 d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~ 166 (1100)
++++|++++.|+.|..||..+++.+..+.. +.+.+..+..++..+++++.+|.|+.|+... ++... +.+.+. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t--G~~~w---~~~~~~-~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN--NEGLT---KLPFTI-P 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-------CCSE---ECSCCH-H
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCC--Cceee---eeeccC-c
Confidence 467899999999999999999999988866 6666666667777788888999998887654 33321 122111 0
Q ss_pred cccCCCCCCCCCeEEEEeccCC-CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCC
Q 001321 167 EKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEH 245 (1100)
Q Consensus 167 ~~~~~~~~~~~~V~sv~f~P~~-~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~ 245 (1100)
.. + ...|.- .+.++++++.++.|+.||..+++.+..+..
T Consensus 81 ~~----------~---~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~--------------------------- 120 (369)
T 2hz6_A 81 EL----------V---QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS--------------------------- 120 (369)
T ss_dssp HH----------H---TTCSCC-----CCCCEEEEEEEEECCC-------------------------------------
T ss_pred cc----------c---ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC---------------------------
Confidence 00 0 011111 233488889999999999999987654322
Q ss_pred CCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCC
Q 001321 246 QPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 246 ~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~ 282 (1100)
.. ... .+|++..+++++.||.|..||..++
T Consensus 121 ---~~---~~~-~~p~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 121 ---AF---ADS-LSPSTSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp -------------------EEEEEEEEEEECCCSSSS
T ss_pred ---CC---ccc-ccccCCEEEEEecCCEEEEEECCCC
Confidence 10 011 2467888999999999999999877
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.52 E-value=0.0095 Score=62.64 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=107.5
Q ss_pred eEEEeCCCCC--CEEEEEEEeCCCEEEEEECCC--cEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 001321 68 EGLLISPSQL--PYKNLEFLQNQGFLISITNDN--EIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMS 142 (1100)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~Lls~s~d~--~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~ 142 (1100)
+++...+|.. -...|.|+ ++...++.+.++ .|+++|+++++++.....+.......+.+.++.+++... ++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v- 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG- 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE-
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE-
Confidence 3444456654 35889998 655556666655 899999999999999877776655555556778887775 5544
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccc
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQ 222 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~ 222 (1100)
|.+|..+.++... +..+.+ + ..+++ ++.+|+.+..++.|.++|..+.+++....-
T Consensus 110 -~v~D~~t~~~~~t-i~~~~e-------------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V---- 164 (262)
T 3nol_A 110 -FVWNIRNLRQVRS-FNYDGE-------------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTPVRTITV---- 164 (262)
T ss_dssp -EEEETTTCCEEEE-EECSSC-------------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSEEEEEEC----
T ss_pred -EEEECccCcEEEE-EECCCC-------------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeEEEEEEe----
Confidence 5566655666543 222221 1 23444 456577777778899999998876544311
Q ss_pred ccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCC
Q 001321 223 LKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTAS 284 (1100)
Q Consensus 223 ~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~ 284 (1100)
. ..|.. -..+..+.|. +|...+....++.|.+.|..+++.
T Consensus 165 -----~--------~~g~~-------~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 165 -----T--------AHGEE-------LPELNELEWV--DGEIFANVWQTNKIVRIDPETGKV 204 (262)
T ss_dssp -----E--------ETTEE-------CCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBE
T ss_pred -----c--------cCCcc-------ccccceeEEE--CCEEEEEEccCCeEEEEECCCCcE
Confidence 0 00000 1234457765 677666666788999999998853
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.50 E-value=0.046 Score=65.59 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=68.6
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCceeeeeecCCC------------eEEEEEecCCCE----EEEEeCCCcEEEEEEecC
Q 001321 88 QGFLISITN-DNEIQVWSL-ESRSLACCLKWESN------------ITAFSVISGSHF----MYIGDENGLMSVIKYDAD 149 (1100)
Q Consensus 88 ~~~Lls~s~-d~~I~vWd~-~s~~~l~~~~~~~~------------Vt~~~~s~~~~~----l~~G~~dG~V~Iw~~d~~ 149 (1100)
+..|..++. ++.|.-+|. .+++.+..+..... ...+++.|.+.. +++++.++.| +-+|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l--~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNV--AALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEE--EEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEE--EEEECC
Confidence 356777777 889999999 89999877754432 123455444444 8999999955 556666
Q ss_pred CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 150 EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 150 ~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
++++.-. +.+..+. .... ....++. . ++ +++++.. +|.|+.+|..+++.+-.+
T Consensus 140 TG~~~W~-~~~~~~~--~~~~---~~ssP~v---~----~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 140 TGETVWK-VENSDIK--VGST---LTIAPYV---V----KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp TCCEEEE-EECCCGG--GTCB---CCSCCEE---E----TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCCEEEe-ecCCCCC--ccce---eecCCEE---E----CC-EEEEEecccccCCCCeEEEEECCCCcEEEEE
Confidence 6777632 2222111 0000 0001211 1 34 4666663 799999999999886544
No 266
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.49 E-value=0.00013 Score=58.05 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHh
Q 001321 1047 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTM 1092 (1100)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1100)
-......=+++.||||||+.|.+||++|++.|+.|..-|+.|-++|
T Consensus 15 k~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~m 60 (61)
T 3b5n_A 15 VGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAM 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777889999999999999999999999999999999999887
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.49 E-value=0.011 Score=62.19 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=107.8
Q ss_pred eEEEeCCCCC--CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEE
Q 001321 68 EGLLISPSQL--PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVI 144 (1100)
Q Consensus 68 ~~~~~~~h~~--~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw 144 (1100)
+++...+|.. -...|.|.. +...++.+.++.|+++|+++++++... .+.......+.+.++.|++... ++. +|
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~--v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGL--LF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCE--EE
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCE--EE
Confidence 4444455554 458888874 456667777888999999999998888 6666655444556667777664 554 46
Q ss_pred EEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccccc
Q 001321 145 KYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 224 (1100)
Q Consensus 145 ~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~ 224 (1100)
.||..+.++... +..++ .-..+++ ++.+|+.+..++.|.++|..+.+++....-
T Consensus 120 V~D~~Tl~~~~t-i~~~~---------------eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V------ 173 (268)
T 3nok_A 120 TWSGMPPQRERT-TRYSG---------------EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQV------ 173 (268)
T ss_dssp EEETTTTEEEEE-EECSS---------------CCCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEEC------
T ss_pred EEECCcCcEEEE-EeCCC---------------ceeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEe------
Confidence 666666666643 22221 1234444 567788887788999999999877654321
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 225 ~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
. ..+.. -..+..+.|. +|...+....++.|.+-|..+++
T Consensus 174 ---~--------~~g~~-------v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 174 ---K--------LRGQP-------VELINELECA--NGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp ---E--------ETTEE-------CCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCB
T ss_pred ---C--------CCCcc-------cccccccEEe--CCEEEEEECCCCeEEEEeCCCCc
Confidence 0 00000 2244667775 77766666678899999999885
No 268
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.38 E-value=0.028 Score=68.93 Aligned_cols=60 Identities=5% Similarity=-0.082 Sum_probs=42.5
Q ss_pred CCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCC
Q 001321 623 ECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSE 702 (1100)
Q Consensus 623 ~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g 702 (1100)
.+|.|.-||+.+++++++..... ++....+... ..+||+++.||.|.+||..+|
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~----~~~~~~~~t~----------------------gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTA----------------------GNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS----SCCCCEEEET----------------------TTEEEEECTTSEEEEEETTTC
T ss_pred ccceEEEEeCCCCcEEEEccCCC----CCcCceeEeC----------------------CCEEEEECCcccchhhhhhcC
Confidence 34889999999999998765421 2211122211 356899999999999999998
Q ss_pred ccccCC
Q 001321 703 NMISSS 708 (1100)
Q Consensus 703 ~~l~~~ 708 (1100)
+++..-
T Consensus 490 ~~l~~~ 495 (668)
T 1kv9_A 490 EALWQF 495 (668)
T ss_dssp CEEEEE
T ss_pred hhheEe
Confidence 877554
No 269
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.38 E-value=0.043 Score=58.48 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEECC---CcEEEEEcCCCce
Q 001321 36 ATASILAFDHIQRLLAIATL-DGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITND---NEIQVWSLESRSL 110 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~d---~~I~vWd~~s~~~ 110 (1100)
..+..++++|++..|.++.. .++|.+++.++.... +.......-..+++.|++++|..++.. +.|.++++.....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 46789999998776666654 589999998764332 222222356899999977777766643 6788888865432
Q ss_pred eeee-ecCCCeEEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 111 ACCL-KWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 111 l~~~-~~~~~Vt~~~~s~~~~~l~~G~~d-G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
.... ..-.....+++++++.+|++++.. +.|.+++++ ....... +.. . ....+|+. .
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~--g~~~~~~---~~~-~------------~~P~gi~~--d- 217 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--QPGRRKV---LEG-L------------QYPFAVTS--Y- 217 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEEE---EEC-C------------CSEEEEEE--E-
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecC--CCceEEE---ecC-C------------CCceEEEE--e-
Confidence 2222 122457899999999988888764 555554443 2222211 111 0 33466765 2
Q ss_pred CCCEEEEEE-cCCEEEEEEccCCEEEEEe
Q 001321 189 SGNRVLIAY-ENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 189 ~g~~ll~~~-~dg~V~lwdl~~~~~~~~~ 216 (1100)
.+ .++++. .++.|..+|..+++.+...
T Consensus 218 ~~-~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 218 GK-NLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TT-EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CC-EEEEEECCCCeEEEEeCCCCCceEEE
Confidence 34 465555 5579999999988876554
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.37 E-value=0.0059 Score=76.14 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=74.9
Q ss_pred CeEEEEEc-CCCCEEEEEECC-C----eEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECC-----CcEEEEE
Q 001321 37 TASILAFD-HIQRLLAIATLD-G----RIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITND-----NEIQVWS 104 (1100)
Q Consensus 37 ~v~~la~s-p~~~lLA~gs~d-G----~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d-----~~I~vWd 104 (1100)
.+...+|| |||++||.+... | .|+++++.+. +.+.. .-......++|+||++.|+.+..+ ..|.+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57889999 999999977653 3 4999999766 52210 001123568899999888877764 3588899
Q ss_pred cCCCcee--eee--ecCCCeEEEEEecCCCEEEEEeCC-CcEEEEEEecCC
Q 001321 105 LESRSLA--CCL--KWESNITAFSVISGSHFMYIGDEN-GLMSVIKYDADE 150 (1100)
Q Consensus 105 ~~s~~~l--~~~--~~~~~Vt~~~~s~~~~~l~~G~~d-G~V~Iw~~d~~~ 150 (1100)
+.++... ..+ ....-...+.++|++++|+....+ +.-.||-++..+
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 9876421 222 223446788999999988876533 344556555543
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.36 E-value=0.023 Score=62.18 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=118.1
Q ss_pred eeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCC--cEEEEEc
Q 001321 28 IAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDN--EIQVWSL 105 (1100)
Q Consensus 28 ~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~--~I~vWd~ 105 (1100)
.+..+.....+..++++++++++++-..+++|..|+.++...... .-......++|.+++.++++-...+ .|..+|.
T Consensus 24 ~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 24 IITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp EEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 444444446788999999999777776889999999876433322 2234688999999987555544333 4777788
Q ss_pred CCCceeeeeecC--CCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEE
Q 001321 106 ESRSLACCLKWE--SNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGV 182 (1100)
Q Consensus 106 ~s~~~l~~~~~~--~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv 182 (1100)
.++++....... .....+++.+++ .+++.+ .+| +||.++...+.... +..... +.. ..+.........|
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g--~i~~~d~~~~~~~v--~~~~~~-~~~--~~~~~~~~~pngi 174 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRG--AIWLIDVVQPSGSI--WLEHPM-LAR--SNSESVFPAANGL 174 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTT--EEEEEETTTTEEEE--EEECGG-GSC--SSTTCCSCSEEEE
T ss_pred CCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCC--eEEEEeCCCCcEeE--EEECCc-ccc--ccccCCCCcCCCc
Confidence 888765443322 223444544444 455555 477 45777765432211 101100 000 0011111345566
Q ss_pred EeccCCCCCEEEEEE-cCCEEEEEEccC-CEE--EEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 183 LPHPNSSGNRVLIAY-ENALVILWDVSE-AQI--IFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 183 ~f~P~~~g~~ll~~~-~dg~V~lwdl~~-~~~--~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
+| ++.+|+++. ..+.|..|++.. +.+ ...+.. ......+++.
T Consensus 175 --s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~------------------------------~~~P~gi~vd 220 (306)
T 2p4o_A 175 --KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE------------------------------QTNIDDFAFD 220 (306)
T ss_dssp --EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE------------------------------SCCCSSEEEB
T ss_pred --Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec------------------------------cCCCCCeEEC
Confidence 55 455555554 456888898875 321 011000 1123346654
Q ss_pred cCCCCEEEEEEcCCcEEEEecC
Q 001321 259 SSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
++|..+++....+.|.++|..
T Consensus 221 -~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 221 -VEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp -TTCCEEEECBTTCCEEEECTT
T ss_pred -CCCCEEEEeCCCCeEEEECCC
Confidence 899876666677889999864
No 272
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.32 E-value=0.019 Score=63.36 Aligned_cols=199 Identities=10% Similarity=0.035 Sum_probs=114.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCC--C---CCCEEEEEEEe-CCCEEEEEEC-------------
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISP--S---QLPYKNLEFLQ-NQGFLISITN------------- 96 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~--h---~~~V~~l~fs~-d~~~Lls~s~------------- 96 (1100)
..+..++++++...|.++...+.|..++.++.+...... . -.....+++.+ +|...++-..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 357889999844456666666678999886543322211 1 12467899999 8765555432
Q ss_pred ----CCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCC-CeeeeeceeecccccccccC
Q 001321 97 ----DNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADE-GKLFQLPYNISADALSEKAG 170 (1100)
Q Consensus 97 ----d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~-~~l~~~~~~i~~~~~~~~~~ 170 (1100)
++.|..||..+++.......-.....+++++++++|+++.. ++.|.+++++... +.... +..
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~----~~~-------- 227 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV----LVK-------- 227 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE----EEE--------
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce----EEe--------
Confidence 36688999887765433322234567999999998888854 5766555554211 11111 100
Q ss_pred CCCCCCCCeEEEEeccCCCCCEEEEEEc----------CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCcccc
Q 001321 171 FPLLSHQPVVGVLPHPNSSGNRVLIAYE----------NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1100)
Q Consensus 171 ~~~~~~~~V~sv~f~P~~~g~~ll~~~~----------dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~ 240 (1100)
. .+ ...+++.+ +|+.+++... .+.|..+|-. ++.+..+... .+.
T Consensus 228 ~----~g-P~gi~~d~--~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~------------~g~------ 281 (322)
T 2fp8_A 228 I----PN-PGNIKRNA--DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP------------PPF------ 281 (322)
T ss_dssp C----SS-EEEEEECT--TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC------------TTT------
T ss_pred C----CC-CCCeEECC--CCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC------------CCC------
Confidence 0 03 67788855 7874444333 3567788865 4444433210 000
Q ss_pred CCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 241 GISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.-..++++++ .++..+++...++.|..+++..
T Consensus 282 -------~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 282 -------AGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -------TTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred -------ccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence 0234556664 4566555556678899888753
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.26 E-value=0.17 Score=60.55 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=41.2
Q ss_pred CceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecceeEEEEeCCCCc
Q 001321 624 CGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKDAKISIVGGSSEN 703 (1100)
Q Consensus 624 dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~dg~v~v~d~~~g~ 703 (1100)
+|.|.-||+.+++++++...... +.+-... ....++|+|+.||.++.||..+|+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~----------------------tagglvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP----LWAGVLA----------------------TAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC----CCSCCEE----------------------ETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCCEEEEecCCCC----CcccceE----------------------eCCCEEEEECCCCcEEEEECCCCC
Confidence 68899999999998877654211 1100000 013568889999999999999999
Q ss_pred cccCC
Q 001321 704 MISSS 708 (1100)
Q Consensus 704 ~l~~~ 708 (1100)
+|.+.
T Consensus 519 ~lW~~ 523 (582)
T 1flg_A 519 ELWKF 523 (582)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88664
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.25 E-value=0.13 Score=56.38 Aligned_cols=199 Identities=13% Similarity=-0.007 Sum_probs=118.2
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCC----ce-EEEeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCC
Q 001321 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDG----IE-GLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESR 108 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~----~~-~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~ 108 (1100)
..+..++|++.++.|.... .+++|+.++.++ .. ..+....-.....+++.+.++.|..++ ..+.|.+.|+...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4678999999776665554 458999999875 22 222222223457899987666666554 5688999999876
Q ss_pred ceeeeee-cCCCeEEEEEecCCCEEEEEeCC--CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 109 SLACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 109 ~~l~~~~-~~~~Vt~~~~s~~~~~l~~G~~d--G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
....... .-.....++++|.+.+|+..+.. +.| +.++.+....... +... ......|++.
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I--~~~~~dG~~~~~~---~~~~------------~~~P~gla~d 172 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI--KKGGLNGVDIYSL---VTEN------------IQWPNGITLD 172 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE--EEEETTSCCEEEE---ECSS------------CSCEEEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE--EEEcCCCCCeEEE---EECC------------CCCceEEEEe
Confidence 5443333 23568899999988888887754 545 5544432222110 1111 1567899997
Q ss_pred cCCCCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 186 PNSSGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 186 P~~~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
| ++.+|+.+. ..+.|..+|++......+... . .......+++.. .+..
T Consensus 173 ~--~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~-------~--------------------~~~~~P~giav~--~~~l 221 (316)
T 1ijq_A 173 L--LSGRLYWVDSKLHSISSIDVNGGNRKTILED-------E--------------------KRLAHPFSLAVF--EDKV 221 (316)
T ss_dssp T--TTTEEEEEETTTTEEEEEETTSCSCEEEEEC-------T--------------------TTTSSEEEEEEE--TTEE
T ss_pred c--cCCEEEEEECCCCeEEEEecCCCceEEEeec-------C--------------------CccCCcEEEEEE--CCEE
Confidence 7 344566655 456888899876433222110 0 002234566643 3555
Q ss_pred EEEEEcCCcEEEEecCCC
Q 001321 265 LAVGYIDGDILLWNTSTT 282 (1100)
Q Consensus 265 l~sg~~DG~I~lWd~~~~ 282 (1100)
+++-...+.|..++..++
T Consensus 222 y~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 222 FWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEETTTTEEEEEETTTC
T ss_pred EEEECCCCeEEEEeCCCC
Confidence 555556677888876555
No 275
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.12 E-value=0.0087 Score=65.91 Aligned_cols=175 Identities=16% Similarity=0.197 Sum_probs=107.7
Q ss_pred CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec-CCCeEEEEE
Q 001321 47 QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW-ESNITAFSV 125 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~-~~~Vt~~~~ 125 (1100)
+..|.+|+.+|.|..|+..+........+...+..+.+.+++. |..++.++.|..+|.. ++.+..+.. ...+.++.+
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 5677889999999999988444333333444566666666654 6667778999999999 777665543 345677777
Q ss_pred ecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEE
Q 001321 126 ISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILW 205 (1100)
Q Consensus 126 s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lw 205 (1100)
++++. +++|+ +.|..++ .++... +...... ..+.++...+ +|. +.++..++.|..+
T Consensus 185 d~~g~-l~v~t--~~l~~~d---~~g~~~---~~~~~~~------------~~~~~~~~~~--~g~-l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 185 GKDGT-IYFGS--DKVYAIN---PDGTEK---WNFYAGY------------WTVTRPAISE--DGT-IYVTSLDGHLYAI 240 (330)
T ss_dssp CTTCC-EEEES--SSEEEEC---TTSCEE---EEECCSS------------CCCSCCEECT--TSC-EEEEETTTEEEEE
T ss_pred cCCCE-EEEEe--CEEEEEC---CCCcEE---EEEccCC------------cceeceEECC--CCe-EEEEcCCCeEEEE
Confidence 77766 55566 6565555 233333 2222111 3455666633 566 8888888888888
Q ss_pred EccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEec
Q 001321 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNT 279 (1100)
Q Consensus 206 dl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~ 279 (1100)
|............ ...+.+++.. ++| .|..++.+|.|..+|.
T Consensus 241 ~~~g~~~~~~~~~------------------------------~~~~~~~~~~-~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 241 NPDGTEKWRFKTG------------------------------KRIESSPVIG-NTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CTTSCEEEEEECS------------------------------SCCCSCCEEC-TTS-CEEEECTTCEEEEECT
T ss_pred CCCCCEeEEeeCC------------------------------CCccccceEc-CCC-eEEEecCCCCEEEECC
Confidence 8544333322211 1112223322 455 4778888888999985
No 276
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.09 E-value=0.39 Score=57.43 Aligned_cols=115 Identities=7% Similarity=0.138 Sum_probs=65.1
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecCCCe----------EEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeece
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWESNI----------TAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPY 158 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~V----------t~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~ 158 (1100)
..|+.++.++.|.-+|..+++.+..+...... ..+++ .+..+++++.++.| +-+|..++++.-. +
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l--~AlD~~TG~~~W~-~ 143 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASV--VALNKNTGKVVWK-K 143 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEE--EEEESSSCCEEEE-E
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEE--EEEECCCCCEEee-e
Confidence 55666666455999999999998777544221 11222 35788999999965 5566666776632 2
Q ss_pred eecccccccccCCCCCCCCCeEEEEeccCCCCC-EEEEEEc------CCEEEEEEccCCEEEEEe
Q 001321 159 NISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAYE------NALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 159 ~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~-~ll~~~~------dg~V~lwdl~~~~~~~~~ 216 (1100)
.+..+. .... ....++. .-. ..+|+ +++++.. +|.|.-+|..+++++-..
T Consensus 144 ~~~~~~--~~~~---~~~sP~v--~~~-~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 144 KFADHG--AGYT---MTGAPTI--VKD-GKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp ECSCGG--GTCB---CCSCCEE--EEC-TTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred cCCCCC--cCcc---cccCCEE--eCC-CcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 222111 0000 0012221 110 01233 4666653 789999999999876543
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.08 E-value=0.11 Score=58.82 Aligned_cols=199 Identities=15% Similarity=0.000 Sum_probs=119.9
Q ss_pred CCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceee
Q 001321 36 ATASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLAC 112 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~g-s~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~ 112 (1100)
..+..++|++....|... ...++|+.|+.++...... .........+++.+.++.|..+.. .+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 357889999866655555 4568999999977644322 222234567889886676766654 6778888887654433
Q ss_pred eeec-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 113 CLKW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 113 ~~~~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
.... -.....++++|.+.+|+..+....=+|+.++.+....... +... ......|++.|. +.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~~------------~~~PnGlavd~~--~~ 258 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADTH------------LFWPNGLTIDYA--GR 258 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS------------CSCEEEEEEEGG--GT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE---EECC------------CCCeeeEEEeCC--CC
Confidence 3322 2567899999999988888764322456665543222211 1111 155789999773 44
Q ss_pred EEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEc
Q 001321 192 RVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYI 270 (1100)
Q Consensus 192 ~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~ 270 (1100)
+|+.+. ..+.|..+|+.......+... . .....+++.+ ++..+++-..
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~-------~----------------------~~~P~giav~--~~~ly~td~~ 307 (386)
T 3v65_B 259 RMYWVDAKHHVIERANLDGSHRKAVISQ-------G----------------------LPHPFAITVF--EDSLYWTDWH 307 (386)
T ss_dssp EEEEEETTTTEEEEECTTSCSCEEEECS-------S----------------------CSSEEEEEEE--TTEEEEEETT
T ss_pred EEEEEECCCCEEEEEeCCCCeeEEEEEC-------C----------------------CCCceEEEEE--CCEEEEeeCC
Confidence 465554 456788888775433222211 0 2234455542 3455555566
Q ss_pred CCcEEEEecCCC
Q 001321 271 DGDILLWNTSTT 282 (1100)
Q Consensus 271 DG~I~lWd~~~~ 282 (1100)
.+.|..++..++
T Consensus 308 ~~~V~~~~~~~G 319 (386)
T 3v65_B 308 TKSINSANKFTG 319 (386)
T ss_dssp TTEEEEEETTTC
T ss_pred CCeEEEEECCCC
Confidence 777877775555
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.07 E-value=0.19 Score=55.94 Aligned_cols=158 Identities=14% Similarity=0.017 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCceEEE-eCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceeee
Q 001321 37 TASILAFDHIQRLLAIAT-LDGRIKVIGGDGIEGLL-ISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACC 113 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~~~~~-~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~~ 113 (1100)
.+..++|++....|.... ..++|+.++.++..... ....-.....+++.+.++.|..+. ..+.|.+.++........
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 478899998766666554 56899999987654332 222223457899998667776655 467899999887654333
Q ss_pred ee-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 114 LK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 114 ~~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
.. .-.....++++|.+.+|+..+....=+|+.++.+....... +... .....+|++.|. +.+
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~~------------~~~PnGla~d~~--~~~ 216 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADTH------------LFWPNGLTIDYA--GRR 216 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES---CCSS------------CSCEEEEEEETT--TTE
T ss_pred EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE---EECC------------CCCcceEEEeCC--CCE
Confidence 32 22567899999988888887764322455555433222210 1111 156789999773 444
Q ss_pred EEEEE-cCCEEEEEEccCCE
Q 001321 193 VLIAY-ENALVILWDVSEAQ 211 (1100)
Q Consensus 193 ll~~~-~dg~V~lwdl~~~~ 211 (1100)
|+.+. ..+.|..+|++...
T Consensus 217 lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp EEEEETTTTEEEEEETTSCS
T ss_pred EEEEECCCCEEEEEeCCCCc
Confidence 65554 45678888887643
No 279
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.06 E-value=0.00049 Score=55.49 Aligned_cols=57 Identities=14% Similarity=0.363 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHH
Q 001321 1030 LRTREEIIAKYRKAEDASSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV 1089 (1100)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1100)
...+..|+.. -.++-......=+++.||||||+.|.+||++|+..|..|..-|+.|-
T Consensus 8 ~d~l~~vq~~---l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~ 64 (65)
T 1gl2_A 8 NDRVRNLQSE---VEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVA 64 (65)
T ss_dssp --CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555 22344677788899999999999999999999999999999998774
No 280
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.05 E-value=0.14 Score=56.07 Aligned_cols=190 Identities=12% Similarity=0.211 Sum_probs=115.9
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeC----CCE--EEEE-E-C--CCcEEEEEc--CCCcee
Q 001321 44 DHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQN----QGF--LISI-T-N--DNEIQVWSL--ESRSLA 111 (1100)
Q Consensus 44 sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d----~~~--Lls~-s-~--d~~I~vWd~--~s~~~l 111 (1100)
+|..++++.-..++-+.|||+++.++..+.. +.+..|..-|+ |.. |+.+ . . +++|.++++ .++. +
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred CCCccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 4566775555567899999998888777643 56777777664 221 3333 3 3 578999977 4554 3
Q ss_pred eee-e------cC-CCeEEEEE--ecCCC--EEEEEeCCCcEEEEEEecC-CCeeeee---ceeecccccccccCCCCCC
Q 001321 112 CCL-K------WE-SNITAFSV--ISGSH--FMYIGDENGLMSVIKYDAD-EGKLFQL---PYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 112 ~~~-~------~~-~~Vt~~~~--s~~~~--~l~~G~~dG~V~Iw~~d~~-~~~l~~~---~~~i~~~~~~~~~~~~~~~ 175 (1100)
... . .. ..+..+++ ++... ++++...+|.+..|.+... .+++... .+.++
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-------------- 179 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-------------- 179 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--------------
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--------------
Confidence 333 1 11 45666676 77543 7899999998888887542 2322210 02222
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc-----CCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCC
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVS-----EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEK 250 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~-----~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~ 250 (1100)
+.+..+...| ...+|+++-++.-|..++.+ +++++...+.. .+ ..
T Consensus 180 -sq~EgcvvDd--~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g------~l---------------------~a 229 (355)
T 3amr_A 180 -SQTEGMAADD--EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR------HL---------------------TR 229 (355)
T ss_dssp -SCEEEEEEET--TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSS------SB---------------------CS
T ss_pred -CCcceEEEcC--CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCC------cc---------------------cc
Confidence 5678888855 45569999999776555544 23444443210 00 23
Q ss_pred ceEEEEEe-cCCCC-EEEEEE-cCCcEEEEecC
Q 001321 251 EISALCWA-SSSGS-ILAVGY-IDGDILLWNTS 280 (1100)
Q Consensus 251 ~V~sl~w~-spdg~-~l~sg~-~DG~I~lWd~~ 280 (1100)
.+..++.. .++|+ +|++.+ .++++.+||..
T Consensus 230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 46666532 46666 566666 57799999985
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.04 E-value=0.17 Score=57.46 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=102.2
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCc-----eEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCC
Q 001321 35 PATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES 107 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~-----~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s 107 (1100)
...+..|+|++....|.... ..++|+.++.++. ...+....-.....|++.+.++.|..++. .+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 34678999999777666665 4689999988652 22233334446788999986566666654 67899999987
Q ss_pred Cceeeeee-cCCCeEEEEEecCCCEEEEEeCC--CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 108 RSLACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 108 ~~~l~~~~-~~~~Vt~~~~s~~~~~l~~G~~d--G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
+....... .-.....++++|.+.+|+..+.. +.| +.++.+....... +... ......|++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I--~~~~~dG~~~~~~---~~~~------------l~~P~glav 253 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI--KKGGLNGVDIYSL---VTEN------------IQWPNGITL 253 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCE--EEEETTSCSCEEE---ECSS------------CSCEEEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEE--EEEeCCCCccEEE---EECC------------CCceEEEEE
Confidence 76544443 23458999999998888888743 555 4444432222211 2211 156889999
Q ss_pred ccCCCCCEEEEEEc-CCEEEEEEccCCEE
Q 001321 185 HPNSSGNRVLIAYE-NALVILWDVSEAQI 212 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~-dg~V~lwdl~~~~~ 212 (1100)
.| ++.+|+.+.. ...|..+|++....
T Consensus 254 d~--~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 254 DL--LSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp ET--TTTEEEEEETTTTEEEEEETTSCCC
T ss_pred Ee--CCCEEEEEECCCCEEEEEeCCCCcc
Confidence 77 3445666654 56888888876543
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.02 Score=66.05 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=98.2
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC----CcEEEEEcCCCcee
Q 001321 37 TASILAFDH-IQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND----NEIQVWSLESRSLA 111 (1100)
Q Consensus 37 ~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d----~~I~vWd~~s~~~l 111 (1100)
.+..|+++| ++..|.++...++|+.++.++..+..+.........|+|.+++.+|+.++.. +...+|-...+...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~ 217 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK 217 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee
Confidence 567899998 4666777766699999999877666555555668899999999977777652 12233333333322
Q ss_pred --eeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 112 --CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 112 --~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
..+..-.....++++|+..+|++++ .++ +|+.++.+.+..... +.++. ......|+|+|
T Consensus 218 ~~~~l~~~~~p~giavdp~~g~lyv~d~~~~--~V~~~~~~~~~~~~~-~~~~~-------------~~~P~gia~~p-- 279 (430)
T 3tc9_A 218 VITELTKGQNCNGAETHPINGELYFNSWNAG--QVFRYDFTTQETTPL-FTIQD-------------SGWEFHIQFHP-- 279 (430)
T ss_dssp SEEEEEECSSCCCEEECTTTCCEEEEETTTT--EEEEEETTTTEEEEE-EECSS-------------SSCCEEEEECT--
T ss_pred eeeeeccCCCceEEEEeCCCCEEEEEECCCC--EEEEEECCCCcEEEE-EEcCC-------------CCcceeEEEcC--
Confidence 2222234467888999555566665 456 456666655554321 12221 13578999988
Q ss_pred CCCEEEEEE-cCCEEEEEEccC
Q 001321 189 SGNRVLIAY-ENALVILWDVSE 209 (1100)
Q Consensus 189 ~g~~ll~~~-~dg~V~lwdl~~ 209 (1100)
+|++|+++. .+..|..++...
T Consensus 280 dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 280 SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TSSEEEEEETTTTEEEEEEEET
T ss_pred CCCEEEEEECCCCEEEEEeCCc
Confidence 677565555 456888877664
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.95 E-value=0.14 Score=56.21 Aligned_cols=196 Identities=17% Similarity=0.080 Sum_probs=117.7
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCce---EEEeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCcee
Q 001321 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIE---GLLISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLA 111 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~g-s~dG~I~vw~~~~~~---~~~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l 111 (1100)
.+.+++|++....|... ...++|+.++.++.. .+... .-.....+++.+.++.|..+. ..+.|.++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 46789999965555544 456899999986652 22222 223456889987666666555 4678999998875443
Q ss_pred eee-ecCCCeEEEEEecCCCEEEEEeC--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 112 CCL-KWESNITAFSVISGSHFMYIGDE--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 112 ~~~-~~~~~Vt~~~~s~~~~~l~~G~~--dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
... ..-.....++++|.+.+|+..+. .+. |+.++.+....... +... ......|++.|
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~--I~r~~~dG~~~~~~---~~~~------------l~~Pnglavd~-- 175 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPK--IERAGMDGSSRFII---INSE------------IYWPNGLTLDY-- 175 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCE--EEEEETTSCSCEEE---ECSS------------CSCEEEEEEET--
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCE--EEEEEcCCCCeEEE---EECC------------CCCccEEEEec--
Confidence 333 23356789999999888888874 454 45555432222210 1111 15678999977
Q ss_pred CCCEEEEEE-cCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEE
Q 001321 189 SGNRVLIAY-ENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAV 267 (1100)
Q Consensus 189 ~g~~ll~~~-~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~s 267 (1100)
++.+|+.+. ..+.|..+|++......+... . .....+++.+ .+..+.+
T Consensus 176 ~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~-------~----------------------~~~P~glav~--~~~lywt 224 (318)
T 3sov_A 176 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-------S----------------------LPHPFALTLF--EDILYWT 224 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECS-------C----------------------CSCEEEEEEE--TTEEEEE
T ss_pred cCCEEEEEECCCCEEEEEcCCCCceEEEecC-------C----------------------CCCceEEEEe--CCEEEEE
Confidence 344466555 456888888875432222210 0 2234455543 2344555
Q ss_pred EEcCCcEEEEecCCCC
Q 001321 268 GYIDGDILLWNTSTTA 283 (1100)
Q Consensus 268 g~~DG~I~lWd~~~~~ 283 (1100)
-...+.|..++..+++
T Consensus 225 d~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 225 DWSTHSILACNKYTGE 240 (318)
T ss_dssp ETTTTEEEEEETTTCC
T ss_pred ecCCCeEEEEECCCCC
Confidence 5566778888876663
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.79 E-value=0.23 Score=61.46 Aligned_cols=160 Identities=13% Similarity=-0.004 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCc-----eEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCC
Q 001321 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-----EGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESR 108 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~-----~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~ 108 (1100)
..+..|+|++....|.... ..++|+.+++++. ...+....-.....|++.+.++.|..++. .+.|.+.++..+
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 4578899999766665554 4588999988652 22333323345678999988777777664 678999999876
Q ss_pred ceeeeee-cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 109 SLACCLK-WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 109 ~~l~~~~-~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
....... .-.....|+++|...+||..+....=+|+.++.+....... +... .....+|++.|.
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l---v~~~------------l~~P~GLavD~~ 568 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTEN------------IQWPNGITLDLL 568 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE---ECSS------------CSCEEEEEEETT
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE---EeCC------------CCCceEEEEecC
Confidence 5544443 23468999999999999988753212445555433332211 2211 156889999763
Q ss_pred CCCCEEEEEEc-CCEEEEEEccCCEE
Q 001321 188 SSGNRVLIAYE-NALVILWDVSEAQI 212 (1100)
Q Consensus 188 ~~g~~ll~~~~-dg~V~lwdl~~~~~ 212 (1100)
+.+|+.+.. ...|...++.....
T Consensus 569 --~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 569 --SGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp --TTEEEEEETTTTEEEEEETTSCSC
T ss_pred --CCeEEEEeCCCCcEEEEecCCCce
Confidence 444666654 45788888876543
No 285
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.76 E-value=0.33 Score=55.73 Aligned_cols=226 Identities=9% Similarity=0.001 Sum_probs=114.1
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC------------------
Q 001321 37 TASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN------------------ 96 (1100)
Q Consensus 37 ~v~~la~sp~--~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~------------------ 96 (1100)
.+..++++|+ ...|.++...++|+.++.....+............|+|.+++. |..++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 4678999995 4555555545899999986666655554444567777777766 333322
Q ss_pred ------------------------------CCcEEEEEcCCCceeeee-e--cCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 001321 97 ------------------------------DNEIQVWSLESRSLACCL-K--WESNITAFSVISGSHFMYIGDE-NGLMS 142 (1100)
Q Consensus 97 ------------------------------d~~I~vWd~~s~~~l~~~-~--~~~~Vt~~~~s~~~~~l~~G~~-dG~V~ 142 (1100)
++.|..+|..++.....+ . ....-..++++|++++|++.+. ++.|+
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 122333333333321111 1 1112235899999998888775 45565
Q ss_pred EEEEecCCCeeeeeceeecccccccccCCC-----CCCCCCeEEEEecc-------CCCCCEEEEEE-cCCEEEEEEccC
Q 001321 143 VIKYDADEGKLFQLPYNISADALSEKAGFP-----LLSHQPVVGVLPHP-------NSSGNRVLIAY-ENALVILWDVSE 209 (1100)
Q Consensus 143 Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~-----~~~~~~V~sv~f~P-------~~~g~~ll~~~-~dg~V~lwdl~~ 209 (1100)
.++++...+.+.. ++.+-+.. ...++. .........+++.+ ..+|. |+++. .+..|+.++. +
T Consensus 299 ~~~~d~~~~~~~~-~~~~ag~~--g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 299 RVDYNRETGKLAV-PYIVCGQH--SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp EEEBCTTTCCBCC-CEEEEECT--TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT-T
T ss_pred EEeCCCCCcccCc-EEEEEecC--CCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC-C
Confidence 5556544443321 12222110 000000 11124577788821 22565 55554 4568888884 5
Q ss_pred CEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 210 AQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+.+..+.+...... .|. ..|... ....-.....+++..++|..+++=..++.|+..+++
T Consensus 374 G~v~t~~G~g~~~~--------~G~--~dG~~~--~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 GRVTTYAGRGNSRE--------WGY--VDGELR--SQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEECCCTTCS--------SCC--BCEETT--TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCCc--------ccc--CCCccc--cccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 66666654310000 000 111000 001133466788642566555555556778877653
No 286
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.76 E-value=0.087 Score=64.41 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=72.8
Q ss_pred CeEEEEEcC-CCCEEEEEECCC-----------eEEEEeCCCceEE----EeCCCCCCEEEEEEEeCCCEEEEEE-CCCc
Q 001321 37 TASILAFDH-IQRLLAIATLDG-----------RIKVIGGDGIEGL----LISPSQLPYKNLEFLQNQGFLISIT-NDNE 99 (1100)
Q Consensus 37 ~v~~la~sp-~~~lLA~gs~dG-----------~I~vw~~~~~~~~----~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~ 99 (1100)
...+.++.| ++++++.|+.++ .+.+||....+.. ...++......+++..++..++.++ .++.
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~ 266 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 266 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence 344677777 889999987653 6888988544322 2223333345677888888888877 4568
Q ss_pred EEEEEcCCCceeeee--ecCCCeEEEEEecCCCEEEEEe-CC-----CcEEEEEEecCCCeee
Q 001321 100 IQVWSLESRSLACCL--KWESNITAFSVISGSHFMYIGD-EN-----GLMSVIKYDADEGKLF 154 (1100)
Q Consensus 100 I~vWd~~s~~~l~~~--~~~~~Vt~~~~s~~~~~l~~G~-~d-----G~V~Iw~~d~~~~~l~ 154 (1100)
+.+||..+++-.... .....-.++++.++++.+++|+ .+ ..+.+ ||...++..
T Consensus 267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~--yd~~t~~W~ 327 (656)
T 1k3i_A 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV--YSPSSKTWT 327 (656)
T ss_dssp EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE--EETTTTEEE
T ss_pred eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE--eCCCCCcce
Confidence 999999887543322 2222234556667889888888 34 34544 444445444
No 287
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.74 E-value=0.16 Score=55.33 Aligned_cols=192 Identities=12% Similarity=0.029 Sum_probs=104.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCCceEE--EeCCCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCC
Q 001321 33 GIPATASILAFDHIQRLLAIATLDG--RIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLES 107 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG--~I~vw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s 107 (1100)
..+..+..++++++++++++....+ .|..++....++. ...+....-..+++.++ ..++..+ .++.|.++|..+
T Consensus 69 ~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 69 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTT
T ss_pred eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCC
Confidence 4456788999999999766554432 4666665443332 22222223345555555 4455455 478899999876
Q ss_pred Cc--eeeee------e-cC--CCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 108 RS--LACCL------K-WE--SNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 108 ~~--~l~~~------~-~~--~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
++ +.... . .. .....+ ++++++|++... .+.|.+++++.+ +.+... -.+. ..
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~-~~~~-~~----------- 211 (306)
T 2p4o_A 148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKPGEP-EIFV-EQ----------- 211 (306)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCBCCC-EEEE-ES-----------
T ss_pred CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCcc-EEEe-cc-----------
Confidence 53 21100 0 01 134455 788888888875 555655555431 332110 0010 00
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISAL 255 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl 255 (1100)
.....+++.| +|+.+++....+.|.++|.. ++....... ... -...+++
T Consensus 212 -~~P~gi~vd~--dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-------~~~--------------------~~~p~~~ 260 (306)
T 2p4o_A 212 -TNIDDFAFDV--EGNLYGATHIYNSVVRIAPD-RSTTIIAQA-------EQG--------------------VIGSTAV 260 (306)
T ss_dssp -CCCSSEEEBT--TCCEEEECBTTCCEEEECTT-CCEEEEECG-------GGT--------------------CTTEEEE
T ss_pred -CCCCCeEECC--CCCEEEEeCCCCeEEEECCC-CCEEEEeec-------ccc--------------------cCCceEE
Confidence 2345567755 68744444556788888875 444332211 000 2457888
Q ss_pred EEec--CCCCEEEEEEcCC
Q 001321 256 CWAS--SSGSILAVGYIDG 272 (1100)
Q Consensus 256 ~w~s--pdg~~l~sg~~DG 272 (1100)
+|.. |++..|++....+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 8743 7877777776544
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.70 E-value=0.087 Score=57.75 Aligned_cols=183 Identities=14% Similarity=0.182 Sum_probs=113.0
Q ss_pred CCccccccceeeeecCCCCCeEEEEEcCCCC----E--EEEEEC----CCeEEEEeCC--CceEEEeCC------CC-CC
Q 001321 18 SLTAADLNLRIAVHYGIPATASILAFDHIQR----L--LAIATL----DGRIKVIGGD--GIEGLLISP------SQ-LP 78 (1100)
Q Consensus 18 ~l~~~~~~~~~~~~~G~~~~v~~la~sp~~~----l--LA~gs~----dG~I~vw~~~--~~~~~~~~~------h~-~~ 78 (1100)
+|.--+++-+++.+... +.++.+.+-|.-. . ||+++. +++|++|.++ ..++..... .. ..
T Consensus 51 gL~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~ 129 (355)
T 3amr_A 51 GLVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINE 129 (355)
T ss_dssp EEEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSS
T ss_pred CEEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCC
Confidence 33333444445555432 5677777766321 1 444443 5799999663 333332211 11 34
Q ss_pred EEEEEE--EeCCC--EEEEEECCCcEEEEEc-------CCCceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEe
Q 001321 79 YKNLEF--LQNQG--FLISITNDNEIQVWSL-------ESRSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYD 147 (1100)
Q Consensus 79 V~~l~f--s~d~~--~Lls~s~d~~I~vWd~-------~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d 147 (1100)
+-.+|+ ++..+ |++....++.+..|++ .+.+++..+...+.+-.|.+++...+|+++.++- -||.|+
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~--GIw~~d 207 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE--AIWKFS 207 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT--EEEEEE
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccc--eEEEEe
Confidence 455777 66433 6888888999999998 3346778888889999999999999999999985 469999
Q ss_pred cC-----CCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC-EEEEEE-cCCEEEEEEcc-CCEEEEEe
Q 001321 148 AD-----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN-RVLIAY-ENALVILWDVS-EAQIIFVG 216 (1100)
Q Consensus 148 ~~-----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~-~ll~~~-~dg~V~lwdl~-~~~~~~~~ 216 (1100)
.+ .+++.. .+....+ ...+..|+.-+..+++ +|++++ .+..+.+||.. +.+.+..+
T Consensus 208 a~p~~~~~~~~v~---~~~~g~l----------~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 208 AEPDGGSNGTVID---RADGRHL----------TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp CSTTSCSCCEEEE---EBSSSSB----------CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CCcCCCCCceEEE---EecCCcc----------ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 54 233332 1221110 0358888774433555 566666 46689999997 45544433
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.60 E-value=0.35 Score=50.84 Aligned_cols=174 Identities=10% Similarity=0.098 Sum_probs=106.8
Q ss_pred CCCCCEEEEEEEeCCCEEEEE-ECCCcEEEEEcCCCceeeeeecC--CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC
Q 001321 74 PSQLPYKNLEFLQNQGFLISI-TNDNEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGLMSVIKYDADE 150 (1100)
Q Consensus 74 ~h~~~V~~l~fs~d~~~Lls~-s~d~~I~vWd~~s~~~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~ 150 (1100)
+-...++.++|.|+++.|.++ ..++.|...|.. ++++..+... ...-.+++.+++.++++.-.++.+.++.++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 334579999999987777764 567889999998 8888777544 578889999888766665567777777776543
Q ss_pred Ceeee-eceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC---CEEEEEecCCccccccc
Q 001321 151 GKLFQ-LPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE---AQIIFVGGGKDLQLKDG 226 (1100)
Q Consensus 151 ~~l~~-~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~---~~~~~~~~~~~~~~~~~ 226 (1100)
. +.. ....++- + .........+|+|.| .+.+|+++.+.....||.+.. ........... +...
T Consensus 103 ~-i~~~~~~~~~~-------~-~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~--~~~~ 169 (255)
T 3qqz_A 103 E-VKILKKIKIPL-------Q-ESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA--LQRQ 169 (255)
T ss_dssp C-EEEEEEEECCC-------S-SCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH--HHHT
T ss_pred e-eeeeeeecccc-------c-cccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecchh--hccc
Confidence 2 111 0111110 0 011225589999988 466788888877667777652 10011110000 0000
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 227 VVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 227 l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
.....+.++++....+.+++....+..|..+|...
T Consensus 170 --------------------~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 170 --------------------FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp --------------------CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred --------------------cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 01334678888744555566666677788888653
No 290
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.59 E-value=0.14 Score=62.49 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=66.6
Q ss_pred EEEEEec-CCCEEEEEeCCC---------cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 121 TAFSVIS-GSHFMYIGDENG---------LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 121 t~~~~s~-~~~~l~~G~~dG---------~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.+.++.+ +++.++.|+.+. .-.+|.||...++.... ..++. .+.....++++.+ ++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~-----------~~~~~~~~~~~~~--~g 254 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR-TVTVT-----------KHDMFCPGISMDG--NG 254 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC-EEEEC-----------SCCCSSCEEEECT--TS
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC-cccCC-----------CCCCccccccCCC--CC
Confidence 4667777 778888876532 23466677655554432 11111 1112233445533 67
Q ss_pred CEEEEEEc-CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 191 NRVLIAYE-NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 191 ~~ll~~~~-dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
..+++|+. +..+.+||..+++-.... .++ ....-.+++.. ++|+.++.|+
T Consensus 255 ~lyv~GG~~~~~v~~yd~~t~~W~~~~---------~~~-------------------~~R~~~s~~~~-~dg~iyv~GG 305 (656)
T 1k3i_A 255 QIVVTGGNDAKKTSLYDSSSDSWIPGP---------DMQ-------------------VARGYQSSATM-SDGRVFTIGG 305 (656)
T ss_dssp CEEEECSSSTTCEEEEEGGGTEEEECC---------CCS-------------------SCCSSCEEEEC-TTSCEEEECC
T ss_pred CEEEeCCCCCCceEEecCcCCceeECC---------CCC-------------------ccccccceEEe-cCCeEEEEeC
Confidence 76777763 457899999887644321 111 01111233433 7899988888
Q ss_pred -cC-----CcEEEEecCCC
Q 001321 270 -ID-----GDILLWNTSTT 282 (1100)
Q Consensus 270 -~D-----G~I~lWd~~~~ 282 (1100)
.+ .++.+||..+.
T Consensus 306 ~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 306 SWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp CCCSSSCCCCEEEEETTTT
T ss_pred cccCCcccccceEeCCCCC
Confidence 34 46888988755
No 291
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.54 E-value=0.42 Score=53.13 Aligned_cols=196 Identities=13% Similarity=0.019 Sum_probs=120.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeee
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACC 113 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~ 113 (1100)
+...+|.+..+.. +|..+. ...|+..+.++...............++|.+..+.|.-++. .+.|..+++.++.....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 4567888888844 444443 46788899887666555555556889999987777777764 67899999987764443
Q ss_pred eec-CCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 114 LKW-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 114 ~~~-~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
... -.....+++++.+..|+..+. .+.|.+.+.+. ...... +... ......|++.|. .+.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l---~~~~------------l~~P~~iavdp~-~g~ 172 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVL---LWQS------------LEKPRAIALHPM-EGT 172 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEE---ECTT------------CSCEEEEEEETT-TTE
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEE---EeCC------------CCCcceEEEecC-cCe
Confidence 322 245678999998887777765 56665555442 221110 2111 155789999874 344
Q ss_pred EEEEEE-cC-CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 192 RVLIAY-EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 192 ~ll~~~-~d-g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
|+.+. .+ +.|..++++.......... .-.....++|. |++..|+.+.
T Consensus 173 -ly~td~~~~~~I~r~~~dG~~~~~~~~~-----------------------------~~~~PnGla~d-~~~~~lY~aD 221 (349)
T 3v64_C 173 -IYWTDWGNTPRIEASSMDGSGRRIIADT-----------------------------HLFWPNGLTID-YAGRRMYWVD 221 (349)
T ss_dssp -EEEEECSSSCEEEEEETTSCSCEESCCS-----------------------------SCSCEEEEEEE-TTTTEEEEEE
T ss_pred -EEEeccCCCCEEEEEeCCCCCcEEEEEC-----------------------------CCCCcceEEEe-CCCCEEEEEE
Confidence 44443 34 5666666665322211100 02345678875 7666666654
Q ss_pred -cCCcEEEEecCC
Q 001321 270 -IDGDILLWNTST 281 (1100)
Q Consensus 270 -~DG~I~lWd~~~ 281 (1100)
..+.|..+|...
T Consensus 222 ~~~~~I~~~~~dG 234 (349)
T 3v64_C 222 AKHHVIERANLDG 234 (349)
T ss_dssp TTTTEEEEEETTS
T ss_pred CCCCEEEEEeCCC
Confidence 456788888753
No 292
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.45 E-value=0.1 Score=56.71 Aligned_cols=158 Identities=11% Similarity=0.125 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEeCCCc-eEEEeCCC-----C--CCEEEEEE---EeCCCEEEEEEC---------
Q 001321 38 ASILAFDHIQRLLAIAT-LDGRIKVIGGDGI-EGLLISPS-----Q--LPYKNLEF---LQNQGFLISITN--------- 96 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs-~dG~I~vw~~~~~-~~~~~~~h-----~--~~V~~l~f---s~d~~~Lls~s~--------- 96 (1100)
.-+.+|++...++.+++ ..|.|..|+.... ...+..++ . ..+..|.| .+++++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45689999777777777 6899999999633 22223332 1 13688999 578555554442
Q ss_pred ----CCcEEEEEcC---CCceeeeeecC--------------CCeEEEEEecCCCEEEEEeCC-CcEEEEEEecCCCeee
Q 001321 97 ----DNEIQVWSLE---SRSLACCLKWE--------------SNITAFSVISGSHFMYIGDEN-GLMSVIKYDADEGKLF 154 (1100)
Q Consensus 97 ----d~~I~vWd~~---s~~~l~~~~~~--------------~~Vt~~~~s~~~~~l~~G~~d-G~V~Iw~~d~~~~~l~ 154 (1100)
++.|..+|+. +++.+...... .....++++++++.-++++.. +. ||.++.+...+.
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGKTVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSCCEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCCEEe
Confidence 5779999999 77776555321 247899999999988888877 74 588888755443
Q ss_pred eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC
Q 001321 155 QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 155 ~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
++.+.... .........|+++| +|.+|++....|.+..+|+..
T Consensus 173 --~~~~~~~~--------~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 --TFAWESGN--------GGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp --EEEECCCC--------SSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred --eeeecCCC--------cccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 22221100 00113467999988 788788887888888899874
No 293
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.36 E-value=0.56 Score=52.88 Aligned_cols=193 Identities=12% Similarity=-0.019 Sum_probs=117.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeeeee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~~~ 115 (1100)
.-+|.+.++.. +|..+ ....|+.++.++...............++|.+.++.|.-++. .+.|..|++..+.......
T Consensus 78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CCeECCccccc-eeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 45677777743 44444 347799999877665555555556889999987777777764 6789999998876544332
Q ss_pred c-CCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEE
Q 001321 116 W-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRV 193 (1100)
Q Consensus 116 ~-~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~l 193 (1100)
. ......+++++.+..|+..+. .+.| +.++.+....... +... ......|++.|. .+. |
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I--~~~~~dg~~~~~l---~~~~------------l~~P~giavdp~-~g~-l 216 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRI--EVANLDGAHRKVL---LWQS------------LEKPRAIALHPM-EGT-I 216 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEE--EECBTTSCSCEEE---ECSS------------CSCEEEEEEETT-TTE-E
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeE--EEEeCCCCceEEe---ecCC------------CCCCcEEEEEcC-CCe-E
Confidence 2 234578999988888877765 4545 4444432222211 2211 156789999874 344 5
Q ss_pred EEEE-cC-CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-c
Q 001321 194 LIAY-EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-I 270 (1100)
Q Consensus 194 l~~~-~d-g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~ 270 (1100)
+.+. .. +.|..++++......+... . -.....++|. |++..|+.+. .
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~~-------~----------------------~~~PnGlavd-~~~~~lY~aD~~ 266 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIADT-------H----------------------LFWPNGLTID-YAGRRMYWVDAK 266 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECS-------S----------------------CSCEEEEEEE-GGGTEEEEEETT
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEEC-------C----------------------CCCeeeEEEe-CCCCEEEEEECC
Confidence 4444 33 5677777665432222111 0 2335678875 7666666554 4
Q ss_pred CCcEEEEecC
Q 001321 271 DGDILLWNTS 280 (1100)
Q Consensus 271 DG~I~lWd~~ 280 (1100)
.+.|..+|..
T Consensus 267 ~~~I~~~d~d 276 (386)
T 3v65_B 267 HHVIERANLD 276 (386)
T ss_dssp TTEEEEECTT
T ss_pred CCEEEEEeCC
Confidence 5668888765
No 294
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.33 E-value=0.18 Score=60.34 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=44.5
Q ss_pred EEEEEeCCCEEEEEECC----------------CcEEEEEcCCCceeeeeecC----------CCeEEEEEecCC---CE
Q 001321 81 NLEFLQNQGFLISITND----------------NEIQVWSLESRSLACCLKWE----------SNITAFSVISGS---HF 131 (1100)
Q Consensus 81 ~l~fs~d~~~Lls~s~d----------------~~I~vWd~~s~~~l~~~~~~----------~~Vt~~~~s~~~---~~ 131 (1100)
.+++.++.+.+..++.+ +.|..+|..+++.+..++.. .....+....++ +.
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 35666665666655432 25999999999998777432 111222333466 36
Q ss_pred EEEEeCCCcEEEEEEecCCCeee
Q 001321 132 MYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 132 l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
+++++.+|.+ +-+|..++++.
T Consensus 319 v~~~~~~G~l--~~lD~~tG~~~ 339 (571)
T 2ad6_A 319 LSHIDRNGIL--YTLNRENGNLI 339 (571)
T ss_dssp EEEECTTSEE--EEEETTTCCEE
T ss_pred EEEeCCCcEE--EEEECCCCCEE
Confidence 7789999966 44555567665
No 295
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.32 E-value=0.11 Score=59.73 Aligned_cols=158 Identities=12% Similarity=0.080 Sum_probs=100.2
Q ss_pred CEEEEEEEe-CCCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCC---cEEEEEEecCCCee
Q 001321 78 PYKNLEFLQ-NQGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKL 153 (1100)
Q Consensus 78 ~V~~l~fs~-d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG---~V~Iw~~d~~~~~l 153 (1100)
....|+|+| +++.|..++..+.|+.+|+.++.+............+++++++++|++.+..+ ...++.++.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence 347889997 46778888777889999999887766555556789999999999888887632 22333343322 12
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSE 233 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g 233 (1100)
... ..+.. ...+.+++++|. +|..+++-..++.|..|+..++........ .
T Consensus 217 ~~~-~~l~~-------------~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~---------~----- 267 (430)
T 3tc9_A 217 KVI-TELTK-------------GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTI---------Q----- 267 (430)
T ss_dssp CSE-EEEEE-------------CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEEC---------S-----
T ss_pred eee-eeecc-------------CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEc---------C-----
Confidence 100 01110 134567788774 566444555678899999987765333211 0
Q ss_pred CCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE-EcCCcEEEEecC
Q 001321 234 GDSTFLEGISEHQPEEKEISALCWASSSGSILAVG-YIDGDILLWNTS 280 (1100)
Q Consensus 234 ~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg-~~DG~I~lWd~~ 280 (1100)
.......++|. |+|++|+.+ ...+.|..++..
T Consensus 268 --------------~~~~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 268 --------------DSGWEFHIQFH-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp --------------SSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred --------------CCCcceeEEEc-CCCCEEEEEECCCCEEEEEeCC
Confidence 02234578875 999955554 456778887764
No 296
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.02 E-value=0.46 Score=52.24 Aligned_cols=196 Identities=10% Similarity=0.040 Sum_probs=106.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEE-EeC-CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEE-EEEc--CCC
Q 001321 34 IPATASILAFDHIQRLLAIATLDGRIKV-IGG-DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQ-VWSL--ESR 108 (1100)
Q Consensus 34 ~~~~v~~la~sp~~~lLA~gs~dG~I~v-w~~-~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~-vWd~--~s~ 108 (1100)
+++.+..+++.+++.++|++. +|.|.. .|. ..-+. ...++...+..+.|.+++.+++.+ .++.+. -+|- .+-
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~tW~~-~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW 196 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGKNWQA-LVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAW 196 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET-TCCEEEESSTTSSEEE-EECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSC
T ss_pred CCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCCCCEE-eecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCce
Confidence 345677788877777777664 565533 332 22222 234556679999999987666544 455443 3442 233
Q ss_pred ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 109 SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 109 ~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
+.+. ......+..+.+++++..++ +..+|.+++.. .+.+.--.. ...+. ......+.++.+.|
T Consensus 197 ~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~--~D~G~tW~~-~~~~~----------~~~~~~~~~v~~~~-- 259 (327)
T 2xbg_A 197 EPHN-RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSD--PDNSENWGE-LLSPL----------RRNSVGFLDLAYRT-- 259 (327)
T ss_dssp EEEE-CCSSSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEECC-CBCTT----------SSCCSCEEEEEESS--
T ss_pred eECC-CCCCCccceeEECCCCCEEE-EeCCceEEEec--CCCCCeeEe-ccCCc----------ccCCcceEEEEecC--
Confidence 3332 23446788999988887554 44577654432 111221110 11110 00113588899966
Q ss_pred CCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 189 SGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 189 ~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
++. ++++..+|.| .+..+.++.-..... . ......+.++.|. +++ .++.+
T Consensus 260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~---------~-----------------~~~~~~~~~v~~~-~~~-~~~~~ 309 (327)
T 2xbg_A 260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVD---------V-----------------KKVPSNFYKILFF-SPD-QGFIL 309 (327)
T ss_dssp SSC-EEEEESTTCE-EEESSTTSSCEECGG---------G-----------------TTSSSCCCEEEEE-ETT-EEEEE
T ss_pred CCE-EEEEeCCCeE-EEeCCCCcccEEcCc---------c-----------------CCCCCCeEEEEEE-CCC-ceEEE
Confidence 566 6666677765 555555533221110 0 0003456778765 444 57777
Q ss_pred EcCCcEEEEec
Q 001321 269 YIDGDILLWNT 279 (1100)
Q Consensus 269 ~~DG~I~lWd~ 279 (1100)
+.+|.|.-++-
T Consensus 310 G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 GQKGILLRYVT 320 (327)
T ss_dssp CSTTEEEEECC
T ss_pred cCCceEEEEcC
Confidence 78998877764
No 297
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.99 E-value=0.28 Score=54.89 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=95.7
Q ss_pred EeCCCEEEEEECCCcEEEEEcCCCceeeeeecC-----CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCe-------
Q 001321 85 LQNQGFLISITNDNEIQVWSLESRSLACCLKWE-----SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGK------- 152 (1100)
Q Consensus 85 s~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~-----~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~------- 152 (1100)
+.++..++.+- ++.||.=++..+.--..+..+ ..|..+..+|+|.+||+-+..+ |.|..+......
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~-V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE-IFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE-EEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe-EEEEEecCccccCcccccc
Confidence 34545555544 577777777644322333222 3688899999999999987664 888887731100
Q ss_pred --eeeeceeecccccccccCCCCCCCCCeEEEEeccCC-CCCEEEEEEcCCEEEEEEccCC--EEEEEecCCcccccccc
Q 001321 153 --LFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS-SGNRVLIAYENALVILWDVSEA--QIIFVGGGKDLQLKDGV 227 (1100)
Q Consensus 153 --l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~-~g~~ll~~~~dg~V~lwdl~~~--~~~~~~~~~~~~~~~~l 227 (1100)
+....|.+... ......+|..+.|||.. .+..|++-.+|+.|++||+... ++. .+..
T Consensus 107 ~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k--------- 168 (452)
T 3pbp_A 107 DAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNK--------- 168 (452)
T ss_dssp HTTEEEEEEGGGC--------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESC---------
T ss_pred cccceeEEEcCCc--------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhc---------
Confidence 11001222210 01113789999999963 3567999999999999999863 222 2211
Q ss_pred cCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE--cCCcEEEE
Q 001321 228 VDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY--IDGDILLW 277 (1100)
Q Consensus 228 ~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~--~DG~I~lW 277 (1100)
..+..|. ..+...|.++||. .+|-.|+... ..|.|.-.
T Consensus 169 ------~~~~fg~-----d~~~~ev~S~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 ------PNNSFGL-----DARVNDITDLEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ------CCSEEES-----CSSCCCEEEEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred ------cccccCC-----CcccceEEEEEEc-CCCcEEEEEecCCCCCEEEE
Confidence 0111111 1124778999985 6776666655 66776544
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.93 E-value=0.99 Score=52.21 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=93.8
Q ss_pred CeEEEEEcCC-CCEEEEE-ECCCeEEEEeCCCceEEEeCCCC----CCEEEEEE-------EeCCCEEEEEECCC-----
Q 001321 37 TASILAFDHI-QRLLAIA-TLDGRIKVIGGDGIEGLLISPSQ----LPYKNLEF-------LQNQGFLISITNDN----- 98 (1100)
Q Consensus 37 ~v~~la~sp~-~~lLA~g-s~dG~I~vw~~~~~~~~~~~~h~----~~V~~l~f-------s~d~~~Lls~s~d~----- 98 (1100)
.+..|+|+|. ...|.++ ...+.|+++|.....+..+..-. .....++| .+++.+|+..+..+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 5778999993 5445444 44578999999876665444322 24789999 99998787777654
Q ss_pred --cEEEEEcCC-Ccee-----eeeecCCCeEEEEEecCCCEEEEEe-CCCcEEEEEEec-----CCCeee----------
Q 001321 99 --EIQVWSLES-RSLA-----CCLKWESNITAFSVISGSHFMYIGD-ENGLMSVIKYDA-----DEGKLF---------- 154 (1100)
Q Consensus 99 --~I~vWd~~s-~~~l-----~~~~~~~~Vt~~~~s~~~~~l~~G~-~dG~V~Iw~~d~-----~~~~l~---------- 154 (1100)
.|.+.+... +... ..+..-.....++++|+..+|++.. .++.|..++++. .++.+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266666444 2221 1121112345778899777666655 566565555440 033330
Q ss_pred --eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE-cCCEEEEEEccC
Q 001321 155 --QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY-ENALVILWDVSE 209 (1100)
Q Consensus 155 --~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~-~dg~V~lwdl~~ 209 (1100)
+. +.++ .......|+|+| +|++|+++. ....|+.++...
T Consensus 300 ~~~l-~~~~-------------~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 300 FKQL-FTIA-------------DPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEE-EECS-------------SSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred ccee-EecC-------------CCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 10 1121 114568999988 687666665 456777766543
No 299
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.78 E-value=2.7 Score=45.68 Aligned_cols=183 Identities=12% Similarity=-0.046 Sum_probs=109.0
Q ss_pred EEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCC----Cceeeeee-cCCCeEE
Q 001321 49 LLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLES----RSLACCLK-WESNITA 122 (1100)
Q Consensus 49 lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s----~~~l~~~~-~~~~Vt~ 122 (1100)
+|..+. ...|+..+++..+.......-.....++|.+.++.|.-++. .+.|..+++.+ ........ .-.....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 344444 36789999877655544444556789999997777777765 57899999886 22222222 1245689
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC--
Q 001321 123 FSVISGSHFMYIGD-ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-- 199 (1100)
Q Consensus 123 ~~~s~~~~~l~~G~-~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-- 199 (1100)
+++++.+..|++.+ .++.|.+.+.+ ....... +... ......++..|. .+ +|+.+...
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~---~~~~------------~~~P~~iavdp~-~g-~ly~~d~~~~ 142 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTL---FREN------------GSKPRAIVVDPV-HG-FMYWTDWGTP 142 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT--SSSEEEE---EECT------------TCCEEEEEEETT-TT-EEEEEECSSS
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCC--CCceEEE---EECC------------CCCcceEEeCCC-CC-EEEEEccCCC
Confidence 99998777777775 46766665544 2222211 1111 156789999874 34 45555442
Q ss_pred CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEe
Q 001321 200 ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWN 278 (1100)
Q Consensus 200 g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd 278 (1100)
+.|..++++......+... . -.....++|. +++..|+.+. ..+.|..+|
T Consensus 143 ~~I~~~~~dG~~~~~~~~~-------~----------------------~~~P~gla~d-~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 143 AKIKKGGLNGVDIYSLVTE-------N----------------------IQWPNGITLD-LLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp CEEEEEETTSCCEEEEECS-------S----------------------CSCEEEEEEE-TTTTEEEEEETTTTEEEEEE
T ss_pred CeEEEEcCCCCCeEEEEEC-------C----------------------CCCceEEEEe-ccCCEEEEEECCCCeEEEEe
Confidence 6777777765433222111 0 2345678876 7777676655 456788888
Q ss_pred cCC
Q 001321 279 TST 281 (1100)
Q Consensus 279 ~~~ 281 (1100)
...
T Consensus 193 ~dg 195 (316)
T 1ijq_A 193 VNG 195 (316)
T ss_dssp TTS
T ss_pred cCC
Confidence 753
No 300
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.61 E-value=0.55 Score=58.25 Aligned_cols=112 Identities=10% Similarity=-0.013 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCEEEEEECC-----CeEEEEeCCCce----EEEeCCCCCCEEEEEEEeCCCEEEEEEC---CCcEEEEEc
Q 001321 38 ASILAFDHIQRLLAIATLD-----GRIKVIGGDGIE----GLLISPSQLPYKNLEFLQNQGFLISITN---DNEIQVWSL 105 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~d-----G~I~vw~~~~~~----~~~~~~h~~~V~~l~fs~d~~~Lls~s~---d~~I~vWd~ 105 (1100)
...++|+||++.|+....| ..|+++++.+.+ .++......-...+.|+|||.+|+..+. ...|.++|+
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 3468999999988888765 368888875432 3333344445778899999998887663 446889999
Q ss_pred CCCc--e--eeeee-cCCCeEEEEEecCCCEEEEEeCC--CcEEEEEEecC
Q 001321 106 ESRS--L--ACCLK-WESNITAFSVISGSHFMYIGDEN--GLMSVIKYDAD 149 (1100)
Q Consensus 106 ~s~~--~--l~~~~-~~~~Vt~~~~s~~~~~l~~G~~d--G~V~Iw~~d~~ 149 (1100)
.++. . ..... ..+....+.++.++.++++...+ +.-+||.++..
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp SSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 8762 2 22222 23444555544444445555554 55677777754
No 301
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.60 E-value=0.002 Score=65.40 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001321 1051 AHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1099 (1100)
Q Consensus 1051 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1100)
...=+++.||||||+.|.+||++|.+.|+.|..-|+.| +.+-||+
T Consensus 151 ~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l----~~~~~~~ 195 (196)
T 2nut_C 151 VANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYL----NMRSTYA 195 (196)
T ss_dssp EEEHHHHC-----------------------------------------
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc
Confidence 34557899999999999999999999999999999655 5566996
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.54 E-value=0.027 Score=69.25 Aligned_cols=157 Identities=11% Similarity=-0.064 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCC----ceEEEeC-CCCCCEEEEEEEeCCCEEEEEE-CCCcEEEEEcCCC
Q 001321 36 ATASILAFDHIQRLLAIAT-LDGRIKVIGGDG----IEGLLIS-PSQLPYKNLEFLQNQGFLISIT-NDNEIQVWSLESR 108 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs-~dG~I~vw~~~~----~~~~~~~-~h~~~V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~ 108 (1100)
..+..++|++....|.... ..++|+.++.++ ....... ..-.....|++.+.++.|+.+. ..+.|.++++..+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899999877776664 458999999875 2222111 1112345678876555555443 4678999998876
Q ss_pred ceeeeeec-CCCeEEEEEecCCCEEEEEeCC--CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 109 SLACCLKW-ESNITAFSVISGSHFMYIGDEN--GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 109 ~~l~~~~~-~~~Vt~~~~s~~~~~l~~G~~d--G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
........ ......++++|.+.+|+..+.. +.|.+++++....+.. +.. . .....+|++.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l-----~~~-~-----------l~~PnGlavd 548 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----VTE-N-----------IQWPNGITLD 548 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE-----SCS-S-----------CSSCCCEEEC
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE-----EeC-C-----------CCCccEEEEe
Confidence 55444322 2456788999988888877643 5565444442111111 111 1 1446788997
Q ss_pred cCCCCCEEEEEE-cCCEEEEEEccCCE
Q 001321 186 PNSSGNRVLIAY-ENALVILWDVSEAQ 211 (1100)
Q Consensus 186 P~~~g~~ll~~~-~dg~V~lwdl~~~~ 211 (1100)
|. .+. |+.+. ..+.|..+++....
T Consensus 549 ~~-~~~-LY~aD~~~~~I~~~d~dG~~ 573 (699)
T 1n7d_A 549 LL-SGR-LYWVDSKLHSISSIDVNGGN 573 (699)
T ss_dssp TT-TCC-EEEEETTTTEEEEECSSSSC
T ss_pred cc-CCE-EEEEecCCCeEEEEccCCCc
Confidence 73 344 55444 55688888887643
No 303
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.49 E-value=0.35 Score=57.91 Aligned_cols=168 Identities=13% Similarity=0.157 Sum_probs=97.2
Q ss_pred EEEcCCCCE----EEEEECCCeEEEEeCCCceEEEeC--CC-C--CCEEEEEEEeCCCEEEEEEC------CCcEEEEEc
Q 001321 41 LAFDHIQRL----LAIATLDGRIKVIGGDGIEGLLIS--PS-Q--LPYKNLEFLQNQGFLISITN------DNEIQVWSL 105 (1100)
Q Consensus 41 la~sp~~~l----LA~gs~dG~I~vw~~~~~~~~~~~--~h-~--~~V~~l~fs~d~~~Lls~s~------d~~I~vWd~ 105 (1100)
++++|.+.. |.+++.||.|+-+|....+.+-.. .. . ..+..--...+ ..++.++. ++.|..+|.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEET
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEEC
Confidence 466544444 888999999999998655544221 11 0 01111111124 34555543 789999999
Q ss_pred CCCceeeeeecCCCe---------------------------------------EEEEEecCCCEEEEEeCCCc------
Q 001321 106 ESRSLACCLKWESNI---------------------------------------TAFSVISGSHFMYIGDENGL------ 140 (1100)
Q Consensus 106 ~s~~~l~~~~~~~~V---------------------------------------t~~~~s~~~~~l~~G~~dG~------ 140 (1100)
.+++++..+...... ..+++++....++++..++.
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 999998776433221 14677888999999987641
Q ss_pred --------EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC---CEEEEEEcCCEEEEEEccC
Q 001321 141 --------MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG---NRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 141 --------V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g---~~ll~~~~dg~V~lwdl~~ 209 (1100)
-.|+-+|..++++.-. |....|..-. +. ....++. +... ..+| ..++.+..+|.+.++|..+
T Consensus 270 r~gd~~y~~sv~Ald~~TG~~~W~-~q~~~~d~wd---~d-~~~~p~l-~d~~-~~~G~~~~~v~~~~~~G~l~~lD~~t 342 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGEAKFG-YQKTPHDEWD---YA-GVNVMML-SEQK-DKDGKARKLLTHPDRNGIVYTLDRTD 342 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCCEEEE-EESSTTCSSC---CC-CCCCCEE-EEEE-CTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCccccceEEEEeCCCCceeeE-eecCCCcccc---cc-CCCccEE-Eecc-ccCCcEEEEEEEECCCcEEEEEECCC
Confidence 1456667767777632 3333221000 00 0002222 2221 0245 3466688999999999999
Q ss_pred CEEEEEe
Q 001321 210 AQIIFVG 216 (1100)
Q Consensus 210 ~~~~~~~ 216 (1100)
++++...
T Consensus 343 G~~lw~~ 349 (599)
T 1w6s_A 343 GALVSAN 349 (599)
T ss_dssp CCEEEEE
T ss_pred CCEeecc
Confidence 9876543
No 304
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=95.26 E-value=0.00048 Score=69.27 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcccccc
Q 001321 1055 DKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENRKWWK 1099 (1100)
Q Consensus 1055 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1100)
+++.||||||+.|.+||++|++.|+.|-.-|+.|-++| |||
T Consensus 146 ~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~m----wwk 186 (189)
T 4b93_A 146 DLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAM----CMK 186 (189)
T ss_dssp CCBCTTSSBCCCCEETTCC--------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 57788999999999999999999999999999887666 996
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.24 E-value=0.35 Score=55.99 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=75.4
Q ss_pred EEEEEEEe-CCCEEEEEEC-CCcEEEEEcCCCceeeeeecC----CCeEEEEE-------ecCCCEEEEEeCCC-----c
Q 001321 79 YKNLEFLQ-NQGFLISITN-DNEIQVWSLESRSLACCLKWE----SNITAFSV-------ISGSHFMYIGDENG-----L 140 (1100)
Q Consensus 79 V~~l~fs~-d~~~Lls~s~-d~~I~vWd~~s~~~l~~~~~~----~~Vt~~~~-------s~~~~~l~~G~~dG-----~ 140 (1100)
-..|+|.| +...|..+.. .+.|++.|+.++.+....... .....++| ++++++|++.+..+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46899998 4555655554 467999999998887665332 25899999 99999898888765 2
Q ss_pred EEEEEEecCC-Ceeeeec--eeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 141 MSVIKYDADE-GKLFQLP--YNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 141 V~Iw~~d~~~-~~l~~~~--~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
..|+.++... +.+...+ ..+. .. ....+++.+|. ++.++++-+.++.|..+|+.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~-~~------------~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIA-AY------------KQCNGATIHPI-NGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEE-EE------------SCCCCEEECTT-TCCEEEEETTTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeec-cC------------CCceEEEEcCC-CCeEEEEECCCCEEEEEecc
Confidence 3345554322 2332000 0111 11 34567788885 56656677788899999987
No 306
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.14 E-value=4.3 Score=45.74 Aligned_cols=193 Identities=12% Similarity=-0.041 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCc----eee
Q 001321 38 ASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRS----LAC 112 (1100)
Q Consensus 38 v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~----~l~ 112 (1100)
-+|.+..+. .+|..+. ...|+..++++.........-..+..|+|.+..+.|.-++. .+.|..+++.... ...
T Consensus 75 ~~C~~~~~~-~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~ 152 (400)
T 3p5b_L 75 KACKAVGSI-AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 152 (400)
T ss_dssp SSCCCSTTS-CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE
T ss_pred cceeecccc-ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE
Confidence 344444433 3444444 58899999987766655566667899999997777877765 5778899987632 222
Q ss_pred eee-cCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 113 CLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 113 ~~~-~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
... .......+++++.+..|+..+. .+.|. .++.+....... +... ...+..|++.|. .+
T Consensus 153 ~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~--~~~~~g~~~~~l---~~~~------------~~~P~~iavdp~-~g 214 (400)
T 3p5b_L 153 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS--VADTKGVKRKTL---FREN------------GSKPRAIVVDPV-HG 214 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEE--EECTTTCSEEEE---EECS------------SCCEEEEEEETT-TT
T ss_pred EEeCCCCCcccEEEEecCCceEEEECCCCeEE--EEeCCCCceEEE---EeCC------------CCCcceEEEecc-cC
Confidence 222 3356789999997777777765 56554 444433322211 2111 155789999884 34
Q ss_pred CEEEEEEc--CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEE
Q 001321 191 NRVLIAYE--NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVG 268 (1100)
Q Consensus 191 ~~ll~~~~--dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg 268 (1100)
+|+.+.. .+.|...+++......+... . -.....+++. +++..|+.+
T Consensus 215 -~ly~td~~~~~~I~~~~~dG~~~~~~~~~-------~----------------------l~~P~glavd-~~~~~lY~a 263 (400)
T 3p5b_L 215 -FMYWTDWGTPAKIKKGGLNGVDIYSLVTE-------N----------------------IQWPNGITLD-LLSGRLYWV 263 (400)
T ss_dssp -EEEEEECSSSCCEEEEETTSCSCEEEECS-------S----------------------CSCEEEEEEE-TTTTEEEEE
T ss_pred -eEEEEeCCCCCEEEEEeCCCCccEEEEEC-------C----------------------CCceEEEEEE-eCCCEEEEE
Confidence 3555542 35677777765433222111 0 2345678875 777777766
Q ss_pred E-cCCcEEEEecCC
Q 001321 269 Y-IDGDILLWNTST 281 (1100)
Q Consensus 269 ~-~DG~I~lWd~~~ 281 (1100)
. ..+.|...|+..
T Consensus 264 D~~~~~I~~~d~dG 277 (400)
T 3p5b_L 264 DSKLHSISSIDVNG 277 (400)
T ss_dssp ETTTTEEEEEETTS
T ss_pred ECCCCEEEEEeCCC
Confidence 4 356788887653
No 307
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=95.09 E-value=1.2 Score=48.70 Aligned_cols=155 Identities=11% Similarity=0.042 Sum_probs=95.4
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCceEE-EeCCCCCCEEEEEEEeCCCEEEEEEC--CCcEEEEEcCCCceee
Q 001321 37 TASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGL-LISPSQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSLAC 112 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~g-s~dG~I~vw~~~~~~~~-~~~~h~~~V~~l~fs~d~~~Lls~s~--d~~I~vWd~~s~~~l~ 112 (1100)
.+..+|+++.++.|... ...++|.+++.++.... +....-..-..+++.|.+++|...+. .+.|...+........
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~ 159 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI 159 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence 46679999866655554 45689999999775433 33233345689999998777777763 5778888887543322
Q ss_pred eeec-CCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCC
Q 001321 113 CLKW-ESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSG 190 (1100)
Q Consensus 113 ~~~~-~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g 190 (1100)
.... -.....+++++++..|+..+. .+.|..++++. ...... +... .....++++ . .+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~---~~~~------------~~~P~glav--~-~~ 219 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAV---VKGS------------LPHPFALTL--F-ED 219 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEE---ECSC------------CSCEEEEEE--E-TT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEE---ecCC------------CCCceEEEE--e-CC
Confidence 2211 235689999999999998876 45554444442 222110 1111 145667776 2 23
Q ss_pred CEEEEEEcCCEEEEEEccCCE
Q 001321 191 NRVLIAYENALVILWDVSEAQ 211 (1100)
Q Consensus 191 ~~ll~~~~dg~V~lwdl~~~~ 211 (1100)
..+.+-...+.|..+|..+++
T Consensus 220 ~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 220 ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEecCCCeEEEEECCCCC
Confidence 334444455677777776554
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.84 E-value=3.2 Score=51.21 Aligned_cols=195 Identities=12% Similarity=-0.035 Sum_probs=114.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCc----e
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRS----L 110 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~----~ 110 (1100)
..-+|.+.++.. +|... ....|+..+++..+...+......+..|+|.+..++|...+. .+.|..+++.... .
T Consensus 385 ~~~~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 385 HTKACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 462 (791)
T ss_dssp SCCCCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCceeeeccccc-ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence 344566665544 34333 346788888876665555555567889999997677776665 5678899987632 2
Q ss_pred eeeee-cCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCC
Q 001321 111 ACCLK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNS 188 (1100)
Q Consensus 111 l~~~~-~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~ 188 (1100)
...+. .-.....+++++.++.||+.+. .+.|.+.+++ ....... +... ...+.+|++.|.
T Consensus 463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l---~~~~------------l~~P~gIaVDp~- 524 (791)
T 3m0c_C 463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTL---FREN------------GSKPRAIVVDPV- 524 (791)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEE---EECT------------TCCEEEEEEETT-
T ss_pred eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEE---EeCC------------CCCcceEEEecC-
Confidence 22222 2345778999999988888775 5656555544 2222211 2111 156889999884
Q ss_pred CCCEEEEEE-cC-CEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEE
Q 001321 189 SGNRVLIAY-EN-ALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILA 266 (1100)
Q Consensus 189 ~g~~ll~~~-~d-g~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~ 266 (1100)
.|. |+.+. .. +.|...++.......+... . -.....|+.. +.+..|+
T Consensus 525 ~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~-------~----------------------l~~P~GLavD-~~~~~LY 573 (791)
T 3m0c_C 525 HGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTE-------N----------------------IQWPNGITLD-LLSGRLY 573 (791)
T ss_dssp TTE-EEEEECSSSCEEEEEETTSCCEEEEECS-------S----------------------CSCEEEEEEE-TTTTEEE
T ss_pred CCC-EEEecCCCCCeEEEEecCCCceEEEEeC-------C----------------------CCCceEEEEe-cCCCeEE
Confidence 344 55554 33 6778888876554333221 0 2345667754 6666666
Q ss_pred EEE-cCCcEEEEecCC
Q 001321 267 VGY-IDGDILLWNTST 281 (1100)
Q Consensus 267 sg~-~DG~I~lWd~~~ 281 (1100)
.+. ..+.|...++..
T Consensus 574 waD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 574 WVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEETTTTEEEEEETTS
T ss_pred EEeCCCCcEEEEecCC
Confidence 654 345677777643
No 309
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.53 E-value=0.76 Score=52.70 Aligned_cols=156 Identities=10% Similarity=0.082 Sum_probs=95.0
Q ss_pred EEEEEEEeC--CCEEEEEECCCcEEEEEcCCCceeeeeecCCCeEEEEEecCCCEEEEEeCCC---cEEEEEEecCCCee
Q 001321 79 YKNLEFLQN--QGFLISITNDNEIQVWSLESRSLACCLKWESNITAFSVISGSHFMYIGDENG---LMSVIKYDADEGKL 153 (1100)
Q Consensus 79 V~~l~fs~d--~~~Lls~s~d~~I~vWd~~s~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG---~V~Iw~~d~~~~~l 153 (1100)
-..|+|.++ .+.|..++..+.|+.+|..++.+............++++++++ |++.+..+ .-.++.++...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 468899984 5677777666899999999888776665556789999999999 77776532 12233333221111
Q ss_pred eeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEE-EEEecCCcccccccccCCCC
Q 001321 154 FQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQI-IFVGGGKDLQLKDGVVDSPS 232 (1100)
Q Consensus 154 ~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~-~~~~~~~~~~~~~~l~~~~~ 232 (1100)
.. ..+. .......++++|. +|..+++-..++.|..+|..++.+ .......
T Consensus 220 ~~--~~~~-------------~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~------------- 270 (433)
T 4hw6_A 220 ER--LSLC-------------NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMD------------- 270 (433)
T ss_dssp CE--EEEE-------------ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECS-------------
T ss_pred cc--cccc-------------ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccC-------------
Confidence 00 0011 0134566778764 566344444677888999887765 2222110
Q ss_pred CCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEecC
Q 001321 233 EGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTS 280 (1100)
Q Consensus 233 g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~~ 280 (1100)
. ...-..++|. |+|.+|+.+. ..+.|+.++..
T Consensus 271 -~--------------~~~~~~ia~d-pdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 271 -T--------------KGSNFHIVWH-PTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp -C--------------CSSCEEEEEC-TTSSEEEEEETTTTEEEEEEBC
T ss_pred -C--------------CCCcccEEEe-CCCCEEEEEeCCCCEEEEEeCC
Confidence 0 1112358875 9998665554 46778887764
No 310
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.17 E-value=13 Score=44.61 Aligned_cols=182 Identities=11% Similarity=-0.027 Sum_probs=111.4
Q ss_pred EEEEEECCCeEEEEeCCCceEE--EeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeeeeecC-CCeEEEE
Q 001321 49 LLAIATLDGRIKVIGGDGIEGL--LISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLKWE-SNITAFS 124 (1100)
Q Consensus 49 lLA~gs~dG~I~vw~~~~~~~~--~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~~~~~-~~Vt~~~ 124 (1100)
+|..+ ..+.|+..++++.... +....-.....|+|.+.++.|.-++. ++.|..+++............ .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 4688999998654432 22333346889999998788877764 678999998876544433322 4578899
Q ss_pred EecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc--CCE
Q 001321 125 VISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NAL 201 (1100)
Q Consensus 125 ~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~--dg~ 201 (1100)
+++.+..|+..+. .+.|.+.+++. ...... +.. . .....+|++.|. .|. |+.+.. .+.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~l---~~~-~-----------l~~P~~iavdp~-~G~-lY~tD~g~~~~ 147 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDG--QHRQVL---VWK-D-----------LDSPRALALDPA-EGF-MYWTEWGGKPK 147 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTS--TTCEEE---ECS-S-----------CCCEEEEEEETT-TTE-EEEEECSSSCE
T ss_pred EEeCCCEEEEEECCCCEEEEEecCC--CcEEEE---EeC-C-----------CCCcccEEEccC-CCe-EEEeCCCCCCE
Confidence 9998888887765 45555544442 221111 111 1 156789999885 454 555542 456
Q ss_pred EEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEecC
Q 001321 202 VILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTS 280 (1100)
Q Consensus 202 V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~~ 280 (1100)
|...+++......+... -.....+++. +++..|+.+. ..+.|...|+.
T Consensus 148 I~r~~~dG~~~~~l~~~------------------------------~~~P~GlalD-~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 148 IDRAAMDGSERTTLVPN------------------------------VGRANGLTID-YAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EEEEETTSCSCEEEECS------------------------------CSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCceEEEECC------------------------------CCCcceEEEc-cccCEEEEEECCCCEEEEEcCC
Confidence 66677766543332211 3345677765 7666666654 45678888875
Q ss_pred C
Q 001321 281 T 281 (1100)
Q Consensus 281 ~ 281 (1100)
.
T Consensus 197 G 197 (628)
T 4a0p_A 197 G 197 (628)
T ss_dssp S
T ss_pred C
Confidence 4
No 311
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.73 E-value=2 Score=46.59 Aligned_cols=170 Identities=11% Similarity=0.074 Sum_probs=98.6
Q ss_pred EEEEEEEeCCCEEEEEE-CCCcEEEEEcCCCceeeeeecCC---------CeEEEEE---ecCCCEEEEEeC--------
Q 001321 79 YKNLEFLQNQGFLISIT-NDNEIQVWSLESRSLACCLKWES---------NITAFSV---ISGSHFMYIGDE-------- 137 (1100)
Q Consensus 79 V~~l~fs~d~~~Lls~s-~d~~I~vWd~~s~~~l~~~~~~~---------~Vt~~~~---s~~~~~l~~G~~-------- 137 (1100)
-.+.+|.+..++|..++ ..++|..||...+...... .++ .+..+.+ +|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe-cCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 35678887556666665 6899999999866544332 221 3689999 688777765442
Q ss_pred ---CCcEEEEEEecC---CCeeeeeceeeccccc--ccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcC-CEEEEEEcc
Q 001321 138 ---NGLMSVIKYDAD---EGKLFQLPYNISADAL--SEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN-ALVILWDVS 208 (1100)
Q Consensus 138 ---dG~V~Iw~~d~~---~~~l~~~~~~i~~~~~--~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d-g~V~lwdl~ 208 (1100)
+|.-.|..||.. +++.... ..+....- +...+ .....+..++.-+ +|+..++++.. +.|...+-+
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~~~~~~~~~g---~~~~~~nDvavD~--~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWS-VNFEKVQDEFEKKAG---KRPFGVVQSAQDR--DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEE-EESHHHHHHHHHHHS---SCCEEEEEEEECT--TSCEEEEEEESSCEEEEECTT
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEE-ecCcccccccccccc---ccccCCceeEECC--CCCEEEeCCCCCCeEEEEeCC
Confidence 122344555544 3433311 12221100 00000 0013477888854 78867777777 776666666
Q ss_pred CCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 209 EAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
...+...... . +.. ......+.+++. |+|..|++....|.|.-+|+.
T Consensus 168 G~~~~~~~~~--------~-------~~~---------~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 GKTVSTFAWE--------S-------GNG---------GQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp SCCEEEEEEC--------C-------CCS---------SSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred CCEEeeeeec--------C-------CCc---------ccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence 5533322211 0 000 002336678876 999999998889999999986
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.55 E-value=0.45 Score=53.21 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=75.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCC-Cc------------eE-EEeCC-----CCCCEEEEEEEe---CCCEEEEE
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGD-GI------------EG-LLISP-----SQLPYKNLEFLQ---NQGFLISI 94 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~------------~~-~~~~~-----h~~~V~~l~fs~---d~~~Lls~ 94 (1100)
.|..+..+|+|++||+.+. ..|.|-.++ +. ++ ....+ ...+|..+.|+| ++..|++.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6788999999999999974 578887664 21 11 11111 357899999998 45789999
Q ss_pred ECCCcEEEEEcCCCc--ee------eeee---cCCCeEEEEEecCCCEEEEEe--CCCcE
Q 001321 95 TNDNEIQVWSLESRS--LA------CCLK---WESNITAFSVISGSHFMYIGD--ENGLM 141 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~--~l------~~~~---~~~~Vt~~~~s~~~~~l~~G~--~dG~V 141 (1100)
.+|+.|++||+.... .. ..+. ....|.+++|.+++-.|++.. ++|.|
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 999999999998621 11 1111 115789999999887777755 88876
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.53 E-value=9.7 Score=41.03 Aligned_cols=116 Identities=13% Similarity=0.205 Sum_probs=80.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceeeeee---
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK--- 115 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~~~~--- 115 (1100)
+.-.+|..+.||.=. ...+.||+++..+.+-...-..+|..=.|..+ ..|+-++ +..|.-|+++.. .....+.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 355689999999987 78999999999888766666678998888777 4566665 778999999753 3333331
Q ss_pred --cCCCeEEEEEecCCCEEEEEe---CC----CcEEEEEEecCCCeeeeeceeecccc
Q 001321 116 --WESNITAFSVISGSHFMYIGD---EN----GLMSVIKYDADEGKLFQLPYNISADA 164 (1100)
Q Consensus 116 --~~~~Vt~~~~s~~~~~l~~G~---~d----G~V~Iw~~d~~~~~l~~~~~~i~~~~ 164 (1100)
....|..-..+++.+|++..+ .+ |.+.++..+ ++..+. +.+|.
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e---r~~sQ~---ieGha 199 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD---RKVSQP---IEGHA 199 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT---TTEEEE---ECCSE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec---ccccce---eeeee
Confidence 135799999999999876443 23 555554444 344443 55554
No 314
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.39 E-value=2.1 Score=46.88 Aligned_cols=153 Identities=11% Similarity=0.047 Sum_probs=89.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC--CCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 33 GIPATASILAFDHIQRLLAIATLDGRIKVIGG--DGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~--~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
+.+..+..++++|++.++|++...+..+-+|. ..-+.+ ..+....+..+.+.+++. ++.++.++.+.+++...++-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSC-EEEEETTTEEEEEETTEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCC-EEEEeCCceEEEecCCCCCe
Confidence 45667889999999999988765444444553 222332 345566899999998865 55666788887775333332
Q ss_pred eeeee-----cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEec
Q 001321 111 ACCLK-----WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 111 l~~~~-----~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
-.... ....+.++++.+++..+++|. +|.| .+..| .+..-.. +.... .....+.+|.|.
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~D--gG~tW~~---~~~~~---------~~~~~~~~v~~~ 301 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQD--GGQTWQQ---DVDVK---------KVPSNFYKILFF 301 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESS--TTSSCEE---CGGGT---------TSSSCCCEEEEE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCC--CCcccEE---cCccC---------CCCCCeEEEEEE
Confidence 22221 123588999988777766665 5655 22222 2322110 11100 001456778885
Q ss_pred cCCCCCEEEEEEcCCEEEEEE
Q 001321 186 PNSSGNRVLIAYENALVILWD 206 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V~lwd 206 (1100)
+ ++ .+++++.+|.|.-++
T Consensus 302 ~--~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 302 S--PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp E--TT-EEEEECSTTEEEEEC
T ss_pred C--CC-ceEEEcCCceEEEEc
Confidence 3 34 488888899765554
No 315
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.32 E-value=20 Score=44.02 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=107.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC-----CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS-----PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL 110 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~-----~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~ 110 (1100)
..|.++.. .+ ..|-+|+.+ -|..|+....+..... -....|.++....++...+ ++. +-|..+|..+++.
T Consensus 103 ~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~ 177 (758)
T 3ott_A 103 TDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKF 177 (758)
T ss_dssp SCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEE
T ss_pred ceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCce
Confidence 34666654 33 456667766 5777777544433221 1124577877777765544 443 4577888887765
Q ss_pred eeeeec------CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 111 ACCLKW------ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 111 l~~~~~------~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
...... ...|.++..+.++..|.+|...| + +.++...+++... ..++. ..|.++..
T Consensus 178 ~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G-l--~~~~~~~~~~~~~-~~l~~--------------~~i~~i~~ 239 (758)
T 3ott_A 178 EGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY-L--FQYFPSTGQIKQT-EAFHN--------------NSIKSLAL 239 (758)
T ss_dssp EEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE-E--EEEETTTTEEEEE-EEEEE--------------EEEEEEEE
T ss_pred EEecCCCccccccceeEEEEEECCCCEEEEEECCC-C--eEEcCCCCeEEec-cCCCC--------------CeEEEEEE
Confidence 332111 12488999888877666676544 4 5566555555431 11211 44788877
Q ss_pred ccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCE
Q 001321 185 HPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSI 264 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~ 264 (1100)
..+|. |.+|..+| +.+++..++....+... ...+. ......|.+++-. .+|.
T Consensus 240 --d~~g~-lWigT~~G-l~~~~~~~~~~~~~~~~-------------~~~~~---------~l~~~~i~~i~~D-~~g~- 291 (758)
T 3ott_A 240 --DGNGD-LLAGTDNG-LYVYHNDTTPLQHIIHD-------------SRNIQ---------SLTNNIIWNIFAD-QEHN- 291 (758)
T ss_dssp --CTTCC-EEEEETTE-EEEECCTTSCCEEECCC-------------TTCTT---------SCSCSCEEEEEEC-TTCC-
T ss_pred --cCCCC-EEEEeCCc-eeEEecCCCcEEEEEcC-------------CCCcC---------cCCcCeEEEEEEc-CCCC-
Confidence 44677 88888665 57888877654433211 00000 0115568888854 6665
Q ss_pred EEEEEcCCcEEEE
Q 001321 265 LAVGYIDGDILLW 277 (1100)
Q Consensus 265 l~sg~~DG~I~lW 277 (1100)
|-.|...| +.+.
T Consensus 292 lWiGT~~G-l~~~ 303 (758)
T 3ott_A 292 IWLGTDYG-ISLS 303 (758)
T ss_dssp EEEEESSS-EEEE
T ss_pred EEEEeCCc-cccc
Confidence 55565667 5444
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.25 E-value=20 Score=43.94 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=111.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEe-CCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeee
Q 001321 36 ATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLI-SPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCL 114 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~-~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~ 114 (1100)
..|.++..+.++ .|-+|+.+| +..||......... ......|.++.. .+ +.|-.++.+ -|..+|..+++.....
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEec
Confidence 468899888876 566788766 78888865433221 112235777654 45 445555554 6888998877654321
Q ss_pred -----ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCC
Q 001321 115 -----KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSS 189 (1100)
Q Consensus 115 -----~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~ 189 (1100)
.....|.++..+.++.+. +|..+| + +.++...+++.. +..+... ......|.++...+ +
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l--~~~~~~~~~~~~--~~~~~~~--------~~~~~~i~~i~~d~--~ 201 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-L--CRYIPSNGKFEG--IPLPVHS--------SQSNLFVNSLLEDT--T 201 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEE-EEETTE-E--EEEETTTTEEEE--ECCCCCT--------TCSSCCEEEEEEET--T
T ss_pred cCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-H--hhCccCCCceEE--ecCCCcc--------ccccceeEEEEEEC--C
Confidence 113468888888776644 455566 3 456655555442 2222110 00113588887733 4
Q ss_pred CCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE
Q 001321 190 GNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY 269 (1100)
Q Consensus 190 g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~ 269 (1100)
+..|.+|...| +..+|..+++...... +. ...|.+++-. .+|. |..|.
T Consensus 202 ~~~lWigt~~G-l~~~~~~~~~~~~~~~---------l~--------------------~~~i~~i~~d-~~g~-lWigT 249 (758)
T 3ott_A 202 RQCVWIGTEGY-LFQYFPSTGQIKQTEA---------FH--------------------NNSIKSLALD-GNGD-LLAGT 249 (758)
T ss_dssp TTEEEEEEEEE-EEEEETTTTEEEEEEE---------EE--------------------EEEEEEEEEC-TTCC-EEEEE
T ss_pred CCEEEEEECCC-CeEEcCCCCeEEeccC---------CC--------------------CCeEEEEEEc-CCCC-EEEEe
Confidence 55577777544 5788888776543321 11 3457788743 6666 45555
Q ss_pred cCCcEEEEecCCC
Q 001321 270 IDGDILLWNTSTT 282 (1100)
Q Consensus 270 ~DG~I~lWd~~~~ 282 (1100)
.+| |.+++..+.
T Consensus 250 ~~G-l~~~~~~~~ 261 (758)
T 3ott_A 250 DNG-LYVYHNDTT 261 (758)
T ss_dssp TTE-EEEECCTTS
T ss_pred CCc-eeEEecCCC
Confidence 554 777886554
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=93.08 E-value=13 Score=41.02 Aligned_cols=153 Identities=14% Similarity=0.207 Sum_probs=91.9
Q ss_pred CCeEEEEEcCCCCEEEEEE-------------CCCeEEEEeCCC----ceEEEeCC-----CCCCEEEEEEEe--CC-CE
Q 001321 36 ATASILAFDHIQRLLAIAT-------------LDGRIKVIGGDG----IEGLLISP-----SQLPYKNLEFLQ--NQ-GF 90 (1100)
Q Consensus 36 ~~v~~la~sp~~~lLA~gs-------------~dG~I~vw~~~~----~~~~~~~~-----h~~~V~~l~fs~--d~-~~ 90 (1100)
...-.++++|+|.. .+++ .+|.|.++|.+. .+.+...+ ....--.+.+.+ ++ .+
T Consensus 50 ~G~EDi~~~~~G~~-~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILPNGLA-FISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECTTSEE-EEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcCCCeE-EEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 35567888997644 5554 689999999862 12222222 223556666665 34 36
Q ss_pred EEEEEC---CCcEEEEEcCCC--c--eeeeeecC--CCeEEEEEecCCCEEEEEeC---------------CCcEEEEEE
Q 001321 91 LISITN---DNEIQVWSLESR--S--LACCLKWE--SNITAFSVISGSHFMYIGDE---------------NGLMSVIKY 146 (1100)
Q Consensus 91 Lls~s~---d~~I~vWd~~s~--~--~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~---------------dG~V~Iw~~ 146 (1100)
|+.+.. +.+|.+|++... . ++..+.+. .....+.+.+++.+.++..- ...=+||.+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 777754 467888887653 2 22333222 35789999999987666541 122356777
Q ss_pred ecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-CCEEEEEEccC
Q 001321 147 DADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSE 209 (1100)
Q Consensus 147 d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~ 209 (1100)
+.. ++... ..+ + .....|+|+| +++.++++.. .+.|..|++..
T Consensus 209 d~~--~~~~~---~~~--l-----------~~pNGia~sp--Dg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 209 SPN--DVRVV---AEG--F-----------DFANGINISP--DGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp CTT--CCEEE---EEE--E-----------SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred ECC--eEEEe---ecC--C-----------cccCcceECC--CCCEEEEEeCCCCeEEEEEECC
Confidence 753 22211 111 1 4578999988 7876776664 67888999864
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.41 E-value=1.8 Score=48.09 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=66.7
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeC----CCCCCEEEEEEEeC---CCEEEEEE
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLIS----PSQLPYKNLEFLQN---QGFLISIT 95 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~----~h~~~V~~l~fs~d---~~~Lls~s 95 (1100)
.|..+.+.. |+ ..+..|+|+|+++ |.++..+|+|++++.++.+.+... ........|+|+|+ +++|..+.
T Consensus 18 ~~~~~~va~-~l-~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 18 KFKISEVAS-DL-EVPWSIAPLGGGR-YLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp CEEEEEEEC-SC-SCEEEEEEEETTE-EEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CeEEEEEeC-CC-CCCeEEEEcCCCe-EEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 355555443 43 3578999999998 555667799999986654232211 22346789999997 55555544
Q ss_pred C----C----CcEEEEEcCCC-------c-eeeeeecC--CCeEEEEEecCCCEEE
Q 001321 96 N----D----NEIQVWSLESR-------S-LACCLKWE--SNITAFSVISGSHFMY 133 (1100)
Q Consensus 96 ~----d----~~I~vWd~~s~-------~-~l~~~~~~--~~Vt~~~~s~~~~~l~ 133 (1100)
. + +.|..|+.... + ++..+... .....++|.|++.+.+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyv 150 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYI 150 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEE
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEE
Confidence 3 3 67888887654 1 12222211 1346799999996433
No 319
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=89.97 E-value=38 Score=40.39 Aligned_cols=179 Identities=8% Similarity=-0.027 Sum_probs=99.0
Q ss_pred ECCCeEEEEeCCCc--eEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCce-eeeeecC-CCeEEEEEecC
Q 001321 54 TLDGRIKVIGGDGI--EGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSL-ACCLKWE-SNITAFSVISG 128 (1100)
Q Consensus 54 s~dG~I~vw~~~~~--~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~-l~~~~~~-~~Vt~~~~s~~ 128 (1100)
+....|+..++++. +..+....-.....|+|.+.+++|.-++. .+.|..+++..... ....... .....+++++.
T Consensus 15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~ 94 (619)
T 3s94_A 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 94 (619)
T ss_dssp ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence 34577888888654 34444444456789999998788887775 57799999877632 2222222 56889999998
Q ss_pred CCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc--CCEEEEE
Q 001321 129 SHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE--NALVILW 205 (1100)
Q Consensus 129 ~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~--dg~V~lw 205 (1100)
+..|+.++. .+.|.+.+.+. ...... +... ......|++.|. .|. |+.+.. .+.|...
T Consensus 95 ~~~ly~~d~~~~~I~v~~~dG--~~~~~l---~~~~------------l~~P~~Iavdp~-~g~-ly~tD~g~~~~I~r~ 155 (619)
T 3s94_A 95 GEKLYWTDSETNRIEVSNLDG--SLRKVL---FWQE------------LDQPRAIALDPS-SGF-MYWTDWGEVPKIERA 155 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTS--CSCEEE---ECSS------------CSCCCCEEEETT-TTE-EEEEECSSSCEEEEE
T ss_pred CCEEEEEeCCCCEEEEEECCC--CCEEEE---EeCC------------CCCCceEEEecC-CCe-EEEeccCCCCEEEEE
Confidence 887777764 56666655543 221111 2111 145678888774 344 554442 3455555
Q ss_pred EccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCCcEEEEecCC
Q 001321 206 DVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDGDILLWNTST 281 (1100)
Q Consensus 206 dl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG~I~lWd~~~ 281 (1100)
+++.......... . -.....++.. +++..|+.+. ..+.|...|...
T Consensus 156 ~~dG~~~~~l~~~-------~----------------------~~~P~Glald-~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 156 GMDGSSRFIIINS-------E----------------------IYWPNGLTLD-YEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp ETTSCSCEEEECS-------S----------------------CSSEEEEEEE-TTTTEEEEEETTTCCEEEESSSC
T ss_pred ECCCCceEEEEeC-------C----------------------CCCCcEEEEE-ccCCEEEEEeCCCCeEEEecCCC
Confidence 5554432222111 0 2345667754 6666665553 455677777653
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=89.93 E-value=4.6 Score=44.64 Aligned_cols=111 Identities=9% Similarity=0.001 Sum_probs=64.7
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE--EE-----eCCCCCCEEEEEEEeC---CCEEE
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LL-----ISPSQLPYKNLEFLQN---QGFLI 92 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~--~~-----~~~h~~~V~~l~fs~d---~~~Ll 92 (1100)
-|..+.+.. |+. .+..|+|+|+++.|.++...|+|++++.++... +. ..........|+|+|+ +++|.
T Consensus 7 g~~~~~va~-~l~-~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY 84 (353)
T 2g8s_A 7 TVNVEVLQD-KLD-HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW 84 (353)
T ss_dssp CSEEEEEEE-EES-SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred CcEEEEEEC-CCC-CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence 355555554 333 578999999999344666789999998654321 11 1122345689999995 45554
Q ss_pred EEE-C-------CCcEEEEEcCCC--ce------eeeeec----CCCeEEEEEecCCCEEEEEe
Q 001321 93 SIT-N-------DNEIQVWSLESR--SL------ACCLKW----ESNITAFSVISGSHFMYIGD 136 (1100)
Q Consensus 93 s~s-~-------d~~I~vWd~~s~--~~------l~~~~~----~~~Vt~~~~s~~~~~l~~G~ 136 (1100)
.+. . .+.|..|++... .+ +..+.. ......++|.|++ +|+++.
T Consensus 85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~ 147 (353)
T 2g8s_A 85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIAL 147 (353)
T ss_dssp EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEE
T ss_pred EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEE
Confidence 443 2 235777776533 11 111111 0124579999998 555554
No 321
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.60 E-value=0.46 Score=58.25 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCEEEEE-ECCCeEEEEeCCCceEEEeCC-CCCCEEEEEEEeCCCEEEEEEC--CCcEEEEEcCCCceeee
Q 001321 38 ASILAFDHIQRLLAIA-TLDGRIKVIGGDGIEGLLISP-SQLPYKNLEFLQNQGFLISITN--DNEIQVWSLESRSLACC 113 (1100)
Q Consensus 38 v~~la~sp~~~lLA~g-s~dG~I~vw~~~~~~~~~~~~-h~~~V~~l~fs~d~~~Lls~s~--d~~I~vWd~~s~~~l~~ 113 (1100)
+..||+++.++.|.+. ...++|.+++.++.....+.. .......|++.|.+++|..... .+.|.+.++........
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 5568999765544444 456899999998765544333 2234577889987776666553 26788888765433222
Q ss_pred ee-cCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCC
Q 001321 114 LK-WESNITAFSVISGSHFMYIGDE-NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGN 191 (1100)
Q Consensus 114 ~~-~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~ 191 (1100)
.. .-.....++++|++.+||+++. .+.|.+++++....+.. +.... ......+|++. ...
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~-----~~~~~----------~~~~P~glavd---~~~ 596 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI-----LEDEK----------RLAHPFSLAVF---EDK 596 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE-----CCCSS----------SCSSCCCCEEE---TTE
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE-----EecCC----------cCCCceEeEEE---CCE
Confidence 21 1234568999999888888875 45555555442111111 11000 00223444442 123
Q ss_pred EEEEEEcCCEEEEEEccCCEEEEEe
Q 001321 192 RVLIAYENALVILWDVSEAQIIFVG 216 (1100)
Q Consensus 192 ~ll~~~~dg~V~lwdl~~~~~~~~~ 216 (1100)
.+++.+..+.|..+|..+++.+...
T Consensus 597 lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp EEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEEEeCCCCeEEEEEccCCCceEEe
Confidence 3445555678888888777765543
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=89.55 E-value=28 Score=38.22 Aligned_cols=154 Identities=14% Similarity=0.235 Sum_probs=85.3
Q ss_pred EEEEEEEeCCCEEEEE------------ECCCcEEEEEcCCC--cee--eeee--c---CCCeEEEEEecC--CC-EEEE
Q 001321 79 YKNLEFLQNQGFLISI------------TNDNEIQVWSLESR--SLA--CCLK--W---ESNITAFSVISG--SH-FMYI 134 (1100)
Q Consensus 79 V~~l~fs~d~~~Lls~------------s~d~~I~vWd~~s~--~~l--~~~~--~---~~~Vt~~~~s~~--~~-~l~~ 134 (1100)
...+...++|..++++ ..+|.|.++|..+. +.. .... + .-....+++.++ +. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4555666765333333 26889999998743 322 2111 1 136778888663 43 5555
Q ss_pred Ee-C--CCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEc-------------
Q 001321 135 GD-E--NGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYE------------- 198 (1100)
Q Consensus 135 G~-~--dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~------------- 198 (1100)
.. . +.+|.+|+++.+.+.+... -.+.+.. ......+...| +|. ++++..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~-~~~~g~~-----------~~~pND~~v~~--~G~-fyvt~~~~ftd~~~~~~e~ 196 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKL-----------LPSVNDIVAVG--PEH-FYATNDHYFIDPYLKSWEM 196 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEE-EEECCTT-----------CSSEEEEEEEE--TTE-EEEEESCSCSSHHHHHHHH
T ss_pred EECCCCCCeEEEEEEECCCCEEEEE-eccccCC-----------CCCCceEEEeC--CCC-EEecCCcEeCCcccccchh
Confidence 53 3 5688899999866554421 1222211 25678888866 676 444432
Q ss_pred -----CCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEE-cCC
Q 001321 199 -----NALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGY-IDG 272 (1100)
Q Consensus 199 -----dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~-~DG 272 (1100)
.|.|.-+| .+++...... -..-..++|. ||++.++.+. ..+
T Consensus 197 ~~~~~~g~vyr~d--~~~~~~~~~~------------------------------l~~pNGia~s-pDg~~lYvadt~~~ 243 (355)
T 3sre_A 197 HLGLAWSFVTYYS--PNDVRVVAEG------------------------------FDFANGINIS-PDGKYVYIAELLAH 243 (355)
T ss_dssp HTTCCCEEEEEEC--TTCCEEEEEE------------------------------ESSEEEEEEC-TTSSEEEEEEGGGT
T ss_pred hccCCccEEEEEE--CCeEEEeecC------------------------------CcccCcceEC-CCCCEEEEEeCCCC
Confidence 12332232 2222111110 2335678985 9998887775 467
Q ss_pred cEEEEecC
Q 001321 273 DILLWNTS 280 (1100)
Q Consensus 273 ~I~lWd~~ 280 (1100)
.|..|++.
T Consensus 244 ~I~~~~~~ 251 (355)
T 3sre_A 244 KIHVYEKH 251 (355)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 89999886
No 323
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=88.89 E-value=0.031 Score=56.21 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHH
Q 001321 1053 ARDKLFERQDKLERISRCTEELQSGAEDFASLANEL 1088 (1100)
Q Consensus 1053 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1088 (1100)
.=+++.||||||+.|.+||++|++.|..|-.-|++|
T Consensus 157 NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~l 192 (199)
T 3kyq_A 157 TMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQ 192 (199)
T ss_dssp SGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999986
No 324
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=88.87 E-value=34 Score=38.38 Aligned_cols=209 Identities=10% Similarity=0.148 Sum_probs=129.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceeeeee-c-
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCLK-W- 116 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~~~~-~- 116 (1100)
+.-.+|..+.||.=. ...+.||+++..+.+-...-..+|..=.|..+ ..|.-++ +..|.-|++... .....+. |
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 466788999999887 78999999998888766665668888889877 4455554 788999999753 2333331 1
Q ss_pred ---CCCeEEEEEecCCCEEEEEe---C----CCcEEEEEEecCCCeeee------eceeecccc----------------
Q 001321 117 ---ESNITAFSVISGSHFMYIGD---E----NGLMSVIKYDADEGKLFQ------LPYNISADA---------------- 164 (1100)
Q Consensus 117 ---~~~Vt~~~~s~~~~~l~~G~---~----dG~V~Iw~~d~~~~~l~~------~~~~i~~~~---------------- 164 (1100)
...|..-..+++.+|++..+ . .|.+.++..+....+... ..+++++..
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 226 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 35789999999999877432 1 355555554421100000 001111110
Q ss_pred ----------------cc----cccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCccccc
Q 001321 165 ----------------LS----EKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLK 224 (1100)
Q Consensus 165 ----------------~~----~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~ 224 (1100)
.+ +..+.|....+=..++..++. ...++....-|.+.+||+.++.++..-
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k--ygviyviTK~G~i~lyDleTgt~i~~n-------- 296 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK--HDVVFLITKYGYIHLYDLETGTCIYMN-------- 296 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT--TTEEEEEETTSEEEEEETTTCCEEEEE--------
T ss_pred EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc--CCEEEEEecCceEEEEecccceeeeee--------
Confidence 00 001111122344567777653 445899999999999999999876542
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCC
Q 001321 225 DGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTA 283 (1100)
Q Consensus 225 ~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~ 283 (1100)
.+. ...|-..|.. ....-+++....|.|.--.++...
T Consensus 297 -rIs--------------------~~~iF~t~~~-~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 297 -RIS--------------------GETIFVTAPH-EATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -ECC--------------------SSCEEEEEEE-TTTTEEEEEETTCEEEEEEECTTT
T ss_pred -ccc--------------------CCceEEeccc-CCCCcEEEEccCceEEEEEEcccc
Confidence 121 4444444533 444557777788988877776553
No 325
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=87.72 E-value=5 Score=44.30 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=66.7
Q ss_pred ccccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCce-EEEeC----CCCCCEEEEEEEeC---CCEEEE
Q 001321 22 ADLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGDGIE-GLLIS----PSQLPYKNLEFLQN---QGFLIS 93 (1100)
Q Consensus 22 ~~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~-~~~~~----~h~~~V~~l~fs~d---~~~Lls 93 (1100)
..|..+.+.. |+. .+..++|+|+++++ ++..+|+|++++ ++.. .+... ........|+|+|+ +++|..
T Consensus 19 ~~~~~~~va~-~l~-~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 19 QGLRVEEVVG-GLE-VPWALAFLPDGGML-IAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp -CCCEEEEEC-CCS-CEEEEEECTTSCEE-EEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCcEEEEEEC-CCC-CceEEEEcCCCeEE-EEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence 3455555443 444 57799999999954 556779999998 4432 22111 22346789999998 555555
Q ss_pred EEC-C-----CcEEEEEcCCCc------eeeeeec-C---CCeEEEEEecCCCEEEEEe
Q 001321 94 ITN-D-----NEIQVWSLESRS------LACCLKW-E---SNITAFSVISGSHFMYIGD 136 (1100)
Q Consensus 94 ~s~-d-----~~I~vWd~~s~~------~l~~~~~-~---~~Vt~~~~s~~~~~l~~G~ 136 (1100)
+.. . +.|..|+...+. ++..+.. . .....++|+|++. |+++.
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~ 152 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT 152 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence 443 2 678888887542 1221221 1 1346889999884 55543
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=87.70 E-value=34 Score=36.91 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEE
Q 001321 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 685 (1100)
Q Consensus 606 VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL 685 (1100)
--++..|+....+.+=+.-|.|++||+++++++|..++ .++.|-.-+...... =+
T Consensus 262 PVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI---S~d~iF~ta~~~~~~----------------------Gi 316 (365)
T 2xzh_A 262 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEATA----------------------GI 316 (365)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEEGGGT----------------------EE
T ss_pred eEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc---CCCceEEecccCCCC----------------------cE
Confidence 44888999888899999999999999999999999888 455554333322111 16
Q ss_pred EEEecceeEEEEeCCCCccc
Q 001321 686 IVLFKDAKISIVGGSSENMI 705 (1100)
Q Consensus 686 ~~gt~dg~v~v~d~~~g~~l 705 (1100)
++..+.|.|+-...+..+++
T Consensus 317 ~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 317 IGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEEETTCEEEEEEECTTTHH
T ss_pred EEEcCCCEEEEEEECcccEe
Confidence 66668888888776555544
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=87.31 E-value=15 Score=40.42 Aligned_cols=60 Identities=10% Similarity=0.002 Sum_probs=36.3
Q ss_pred CCeEEEEEcCC---CCEEEEEEC-C-----CeEEEEeCCCc-----eEEEe-CC----CCCCEEEEEEEeCCCEEEEEE
Q 001321 36 ATASILAFDHI---QRLLAIATL-D-----GRIKVIGGDGI-----EGLLI-SP----SQLPYKNLEFLQNQGFLISIT 95 (1100)
Q Consensus 36 ~~v~~la~sp~---~~lLA~gs~-d-----G~I~vw~~~~~-----~~~~~-~~----h~~~V~~l~fs~d~~~Lls~s 95 (1100)
.....|+|+|+ ++.|.++.. . ++|..|+.+.. +.++. .+ ....-..|+|.|||...++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 46788999998 555544433 2 67888887532 22221 22 111236899999986656544
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.65 E-value=27 Score=39.87 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=40.0
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee---------cCCCeEEEEEecC---CCEEEEEeC
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK---------WESNITAFSVISG---SHFMYIGDE 137 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~---------~~~~Vt~~~~s~~---~~~l~~G~~ 137 (1100)
.-..|+|.|+|..+++--..+.|.+++..+++...... ..+.+..++++|+ ..+|++...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 35699999998766554434578888876554322211 2345779999997 778877764
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=86.62 E-value=11 Score=43.21 Aligned_cols=110 Identities=10% Similarity=0.208 Sum_probs=63.7
Q ss_pred cccceeeeecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-Cc-eEEEeCC-------CCCCEEEEEEEeC---CCE
Q 001321 23 DLNLRIAVHYGIPATASILAFDHIQRLLAIATLDGRIKVIGGD-GI-EGLLISP-------SQLPYKNLEFLQN---QGF 90 (1100)
Q Consensus 23 ~~~~~~~~~~G~~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~-~~-~~~~~~~-------h~~~V~~l~fs~d---~~~ 90 (1100)
.|....+.. |+. .+..|+|.|+++++++-...++|++++.. +. +.+.... .......|+|+|+ +++
T Consensus 16 gf~~~~~a~-~l~-~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 16 NFDKKVILS-NLN-KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp TSCEEEEEC-CCS-SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CeEEEEEEC-CCC-CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 355554443 444 56799999999977765444589999763 32 2222221 2456779999995 455
Q ss_pred EEEEEC-------------CCcEEEEEcCCC-------c-eeeeeec--CCCeEEEEEecCCCEEEE
Q 001321 91 LISITN-------------DNEIQVWSLESR-------S-LACCLKW--ESNITAFSVISGSHFMYI 134 (1100)
Q Consensus 91 Lls~s~-------------d~~I~vWd~~s~-------~-~l~~~~~--~~~Vt~~~~s~~~~~l~~ 134 (1100)
|..+.+ .+.|.-|++... + ++..+.. ......++|.|++.+.++
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 544432 235666665432 1 1221211 134789999999974443
No 330
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=84.93 E-value=27 Score=36.84 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=72.8
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCce---EEEeCCCCCC-EEEEEEEeCCCEEEEEEC-----CCcEEEEEcCCCcee
Q 001321 46 IQRLLAIATLD-----GRIKVIGGDGIE---GLLISPSQLP-YKNLEFLQNQGFLISITN-----DNEIQVWSLESRSLA 111 (1100)
Q Consensus 46 ~~~lLA~gs~d-----G~I~vw~~~~~~---~~~~~~h~~~-V~~l~fs~d~~~Lls~s~-----d~~I~vWd~~s~~~l 111 (1100)
++.+++.|+.+ ..+.+||....+ ......-..+ ....+..-++..++.++. .+.+.++|..+.+-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 46677777654 468888875443 2222211111 111111224444444443 246899999887543
Q ss_pred eeeecC--CCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 112 CCLKWE--SNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 112 ~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
..-..+ ..-.++++ .++...++|+.++. -.+|.|+....+.... +. .+..+ .....+.+
T Consensus 142 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~----~~--------~p~~r-~~~~~~~~-- 205 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV----TP--------MATKR-SGAGVALL-- 205 (301)
T ss_dssp EEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE----CC--------CSSCC-BSCEEEEE--
T ss_pred ECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC----CC--------CCccc-ccceEEEE--
Confidence 332222 11112222 25666666665431 2346666655555432 10 11111 11223333
Q ss_pred CCCCCEEEEEEcC-----CEEEEEEccCCEEEEE
Q 001321 187 NSSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1100)
Q Consensus 187 ~~~g~~ll~~~~d-----g~V~lwdl~~~~~~~~ 215 (1100)
++..+++|+.+ ..|.+||+.+.+-...
T Consensus 206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp --TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred --CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 35555666553 3678899988765443
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=84.63 E-value=43 Score=35.71 Aligned_cols=141 Identities=10% Similarity=0.074 Sum_probs=85.8
Q ss_pred CCCCEEEEEE--CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECC--------------CcEEEEEcCCC
Q 001321 45 HIQRLLAIAT--LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITND--------------NEIQVWSLESR 108 (1100)
Q Consensus 45 p~~~lLA~gs--~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d--------------~~I~vWd~~s~ 108 (1100)
+++..|.... .++.|+..+.++.....+.... +--|++++.+|.-+... ..|...++..+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 4677777765 3578888888776655554332 34568888888877643 36888888877
Q ss_pred ceeeeeecCCCeEEEEEecCCCEEEEEe--CCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 109 SLACCLKWESNITAFSVISGSHFMYIGD--ENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 109 ~~l~~~~~~~~Vt~~~~s~~~~~l~~G~--~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
......... +..+++++++++-.+ .++.-.|+.++.+.....+ +..+. + ..+.|
T Consensus 99 ~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~----lt~~~--------------~--~~~~~ 154 (302)
T 3s25_A 99 GSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK----IKNHY--------------L--FTCNT 154 (302)
T ss_dssp CCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE----EESSC--------------C--CCSEE
T ss_pred cceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE----EeCCC--------------c--eEeeE
Confidence 543333222 236778899998876 4555567777765443332 22211 1 23444
Q ss_pred CCCCCEEEEEEc-CCEEEEEEccCCEEEEE
Q 001321 187 NSSGNRVLIAYE-NALVILWDVSEAQIIFV 215 (1100)
Q Consensus 187 ~~~g~~ll~~~~-dg~V~lwdl~~~~~~~~ 215 (1100)
++..|+-.+. ...|.+-++.++....+
T Consensus 155 --~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 155 --SDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp --ETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred --ECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 4555665544 55777777777665444
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=84.27 E-value=31 Score=36.46 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=71.6
Q ss_pred CCCEEEEEECC-----CeEEEEeCCCceEEEeCCCCCC-EEEEEEEeCCCEEEEEECC-----CcEEEEEcCCCceeeee
Q 001321 46 IQRLLAIATLD-----GRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITND-----NEIQVWSLESRSLACCL 114 (1100)
Q Consensus 46 ~~~lLA~gs~d-----G~I~vw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~Lls~s~d-----~~I~vWd~~s~~~l~~~ 114 (1100)
++.+++.|+.+ ..+.+||....+-.....-..+ ..+.+..-++...+.++.+ +.+.++|+.+.+-....
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 45666666544 3567777655443333221111 1111122244555555543 35888998887543332
Q ss_pred ecC--CCeEEEEEecCCCEEEEEeCCC-----cEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccC
Q 001321 115 KWE--SNITAFSVISGSHFMYIGDENG-----LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPN 187 (1100)
Q Consensus 115 ~~~--~~Vt~~~~s~~~~~l~~G~~dG-----~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~ 187 (1100)
..+ ..-.++++ -++...++|+.++ .-.+|.|+..+++.... +. .+..+ .....+.+
T Consensus 141 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~----~~--------~p~~r-~~~~~~~~--- 203 (302)
T 2xn4_A 141 PMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI----AE--------MSTRR-SGAGVGVL--- 203 (302)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE----CC--------CSSCC-BSCEEEEE---
T ss_pred CCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC----CC--------Ccccc-ccccEEEE---
Confidence 222 11122222 2555556665432 11356666655555432 10 11111 11223333
Q ss_pred CCCCEEEEEEcC-----CEEEEEEccCCEEEEE
Q 001321 188 SSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1100)
Q Consensus 188 ~~g~~ll~~~~d-----g~V~lwdl~~~~~~~~ 215 (1100)
++..+++|+.+ ..+.+||..+.+-...
T Consensus 204 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 204 -NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp -TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred -CCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 45556666554 3678899888765443
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.07 E-value=15 Score=40.30 Aligned_cols=98 Identities=11% Similarity=-0.043 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE--EEe-----CCCCCCEEEEEEEeC---CCEE-EEEE--CCCcEEEE
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG--LLI-----SPSQLPYKNLEFLQN---QGFL-ISIT--NDNEIQVW 103 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~--~~~-----~~h~~~V~~l~fs~d---~~~L-ls~s--~d~~I~vW 103 (1100)
.+..|+|.|+++++++-...|+|++++.+.... +.. .........|+|+|+ .++| ++.+ .++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 577999999999766654489999998643222 211 123456889999984 3444 3433 45567667
Q ss_pred EcCCC----------c-eeeeeec--CCCeEEEEEecCCCEEEE
Q 001321 104 SLESR----------S-LACCLKW--ESNITAFSVISGSHFMYI 134 (1100)
Q Consensus 104 d~~s~----------~-~l~~~~~--~~~Vt~~~~s~~~~~l~~ 134 (1100)
.+..+ + ++..+.. ...-..+.|.|++.+.++
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEE
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEE
Confidence 66541 1 1222211 123457999999864433
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=83.96 E-value=61 Score=36.42 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEE
Q 001321 606 VRALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVI 685 (1100)
Q Consensus 606 VtsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL 685 (1100)
--++..|+....+.+-+.-|.|++||+++++++|..++ .+++|-.-+..... .=+
T Consensus 261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~~iF~t~~~~~~----------------------~Gi 315 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEAT----------------------AGI 315 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEEETTT----------------------TEE
T ss_pred eeEEEecccCCEEEEEecCceEEEEecccceeeeeecc---cCCceEEecccCCC----------------------CcE
Confidence 44788999888899999999999999999999999887 45555443322111 115
Q ss_pred EEEecceeEEEEeCCCCccc
Q 001321 686 IVLFKDAKISIVGGSSENMI 705 (1100)
Q Consensus 686 ~~gt~dg~v~v~d~~~g~~l 705 (1100)
++..+.|.|+-...+..+++
T Consensus 316 ~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 316 IGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEEETTCEEEEEEECTTTHH
T ss_pred EEEccCceEEEEEEccccch
Confidence 66668888888876665554
No 335
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.65 E-value=34 Score=36.05 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=73.1
Q ss_pred CCEEEEEE-CC-----CeEEEEeCCCceEEEeCCCCCC-EEEEEEEeCCCEEEEEECC-----CcEEEEEcCCCc---ee
Q 001321 47 QRLLAIAT-LD-----GRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITND-----NEIQVWSLESRS---LA 111 (1100)
Q Consensus 47 ~~lLA~gs-~d-----G~I~vw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~Lls~s~d-----~~I~vWd~~s~~---~l 111 (1100)
+.+++.|+ .+ ..+.+||....+......-..+ ..+.....++..++.++.+ +.+.++|..+++ -.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~ 94 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence 44555555 32 4788888866554433221111 1112223344555555543 569999998876 32
Q ss_pred eee--ecCCCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 112 CCL--KWESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 112 ~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
... ..+..-.++++ .++..+++|+.++. -.+|.|+....+....+ .++ ..+ ..-..+.+
T Consensus 95 ~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p-----------~~r-~~~~~~~~-- 158 (301)
T 2vpj_A 95 SVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-DMQ-----------TAR-EGAGLVVA-- 158 (301)
T ss_dssp EECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-ECS-----------SCC-BSCEEEEE--
T ss_pred ECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-CCC-----------CCc-ccceEEEE--
Confidence 222 21111112222 25666666665432 14577776666555321 111 111 11222233
Q ss_pred CCCCCEEEEEEcC-----CEEEEEEccCCEEEEE
Q 001321 187 NSSGNRVLIAYEN-----ALVILWDVSEAQIIFV 215 (1100)
Q Consensus 187 ~~~g~~ll~~~~d-----g~V~lwdl~~~~~~~~ 215 (1100)
++..++.|+.+ ..+.+||..+.+-...
T Consensus 159 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 190 (301)
T 2vpj_A 159 --SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV 190 (301)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred --CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence 45555565543 3577888888765433
No 336
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=83.48 E-value=20 Score=38.01 Aligned_cols=109 Identities=9% Similarity=-0.023 Sum_probs=53.4
Q ss_pred CCCEEEEEECC----CeEEEEeCCCceEEEeCCCCCC-EEEEEEEeCCCEEEEEECC------CcEEEEEcCCCceeeee
Q 001321 46 IQRLLAIATLD----GRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITND------NEIQVWSLESRSLACCL 114 (1100)
Q Consensus 46 ~~~lLA~gs~d----G~I~vw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~Lls~s~d------~~I~vWd~~s~~~l~~~ 114 (1100)
++.+++.|+.+ ..+.+||....+-.....-..+ ..+.+..-++..++.++.+ +.+.+||..+.+-...-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 45677777654 6777888765543322221111 1111122254555555543 56999999887643332
Q ss_pred ec--CCCeEEEEEecCCCEEEEEeCCC-------cEEEEEEecCCCeeee
Q 001321 115 KW--ESNITAFSVISGSHFMYIGDENG-------LMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 115 ~~--~~~Vt~~~~s~~~~~l~~G~~dG-------~V~Iw~~d~~~~~l~~ 155 (1100)
.. +..-.+++. .++...++|+.++ .-.+|.||..+.+...
T Consensus 135 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~ 183 (306)
T 3ii7_A 135 SMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183 (306)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE
T ss_pred CCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE
Confidence 21 111112222 3555556665322 2235666666555543
No 337
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.14 E-value=55 Score=35.34 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCeEE-EEEcC--CCCEEEEEECCCeEEEEeCCCce-------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 36 ATASI-LAFDH--IQRLLAIATLDGRIKVIGGDGIE-------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 36 ~~v~~-la~sp--~~~lLA~gs~dG~I~vw~~~~~~-------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
..|.+ +.+.. +...+++.|.+|.|+--.+.... ..+.......+..+........|+..+..|.+..+.+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 34544 44543 57899999999999998753211 1122233456777777777688999999999888877
Q ss_pred C--C----C-----ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCC-C
Q 001321 106 E--S----R-----SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFP-L 173 (1100)
Q Consensus 106 ~--s----~-----~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~-~ 173 (1100)
. . + ...-.+.....|.++...+...++++.+..|.++...++. |....-.-....... .
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e---------~~~~~R~~~G~~~~~l~ 245 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE---------YPVQGRGGKGVLTVMYD 245 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG---------SCBCCTTSCCEESSCCC
T ss_pred cccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH---------ccccCcCCCcEEEEEec
Confidence 6 2 1 1112223446688877777777999999999877665442 111100000000000 0
Q ss_pred CCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccC
Q 001321 174 LSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSE 209 (1100)
Q Consensus 174 ~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~ 209 (1100)
...+.+..+.... ....+++.+.+|.+.-+++..
T Consensus 246 ~~~d~lv~~~~~~--~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 246 RRRGRLVGALIVD--DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TTTCSEEEEEEEC--TTCEEEEEEGGGCEEEEEGGG
T ss_pred CCCCeEEEEEEeC--CCccEEEEcCCCeEEEEehhh
Confidence 1124455554422 334578888888777776654
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=81.66 E-value=11 Score=38.19 Aligned_cols=132 Identities=10% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCEEEEEECCCeEEEEeCCCce------EEEeCCCC--CCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce------ee
Q 001321 47 QRLLAIATLDGRIKVIGGDGIE------GLLISPSQ--LPYKNLEFLQNQGFLISITNDNEIQVWSLESRSL------AC 112 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~~------~~~~~~h~--~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~------l~ 112 (1100)
..+|.+..+| +++.=..+... .....++. ..++.++|+|||. |.++ .++.+.-.+..+..- -+
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3456666666 55553332221 11222332 3688999999854 7666 677766666544211 11
Q ss_pred ee---ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecC--CCe-eeeeceee-cccccccccCCCCCCCCCeEEEEec
Q 001321 113 CL---KWESNITAFSVISGSHFMYIGDENGLMSVIKYDAD--EGK-LFQLPYNI-SADALSEKAGFPLLSHQPVVGVLPH 185 (1100)
Q Consensus 113 ~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~--~~~-l~~~~~~i-~~~~~~~~~~~~~~~~~~V~sv~f~ 185 (1100)
.+ .+.. -.++.|+|++.+-++ .||.| +..+.. ... .....-.+ ...+ ..+..|.|.
T Consensus 81 ~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~i--yr~~pP~~~~~~Wl~~a~~vg~~gw------------~~~~~lff~ 143 (236)
T 1tl2_A 81 KIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKL--YKASPPQSDTDNWIARATEVGSGGW------------SGFKFLFFH 143 (236)
T ss_dssp EEECSCGGG-CSEEEECTTSCEEEE--ETTEE--EEESCCCSTTCCHHHHSEEEECSSG------------GGEEEEEEC
T ss_pred Eeccccccc-ceEEEECCCCCEEEe--CCCEE--EEeCCCcCCCCceeccccEeccCCC------------CceEEEEEC
Confidence 11 1222 478999999988777 55865 454431 110 00000011 1112 568999997
Q ss_pred cCCCCCEEEEEEcCCEE
Q 001321 186 PNSSGNRVLIAYENALV 202 (1100)
Q Consensus 186 P~~~g~~ll~~~~dg~V 202 (1100)
| +|. |.+.. ++.+
T Consensus 144 p--~G~-Lyav~-dg~l 156 (236)
T 1tl2_A 144 P--NGY-LYAVH-GQQF 156 (236)
T ss_dssp T--TSC-EEEEE-TTEE
T ss_pred C--Cce-EEEEe-CCcE
Confidence 7 788 44444 7763
No 339
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=81.46 E-value=41 Score=36.81 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=40.0
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-eeeee----ecCCCeEEEEEecC---CCEEEEEeC
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRS-LACCL----KWESNITAFSVISG---SHFMYIGDE 137 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-~l~~~----~~~~~Vt~~~~s~~---~~~l~~G~~ 137 (1100)
.-..|+|.|+|. |+.+..++.|.++|- .++ .+..+ ........++++|+ +.+|++...
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 467899999975 666677799999973 444 22211 12356889999998 677777664
No 340
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=81.16 E-value=72 Score=35.30 Aligned_cols=198 Identities=17% Similarity=0.124 Sum_probs=96.9
Q ss_pred CEEEEEECCCeEEEEeCCCc-e--------EEEeCC----CCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ce---
Q 001321 48 RLLAIATLDGRIKVIGGDGI-E--------GLLISP----SQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SL--- 110 (1100)
Q Consensus 48 ~lLA~gs~dG~I~vw~~~~~-~--------~~~~~~----h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~--- 110 (1100)
+.++.-+.||.|+.|+.... + .....+ ....|..+ +-...+.+....|+.|..|=.... ++
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i--~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQL--IGGEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEE--EEETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEE--EeCCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 34555566788888876321 1 111000 01134444 344567888889999999965332 10
Q ss_pred ------e-eeee--cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee-------eeeceeecccccccccCCCCC
Q 001321 111 ------A-CCLK--WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-------FQLPYNISADALSEKAGFPLL 174 (1100)
Q Consensus 111 ------l-~~~~--~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l-------~~~~~~i~~~~~~~~~~~~~~ 174 (1100)
. ..+. ....+..++++....+.++-..+|.|+.|-.... +++ ...|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~-GqLG~g~~~~~~~p~~v~~l----------- 156 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAED-GKLGHGNRSPCDRPRVIESL----------- 156 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGG-GTTCSSSCCCEEEEEECGGG-----------
T ss_pred CcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCC-CcCCCCCCccCcCCeEeccc-----------
Confidence 0 1111 1234666788888888888899999988865431 111 1112222211
Q ss_pred CCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEE
Q 001321 175 SHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISA 254 (1100)
Q Consensus 175 ~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~s 254 (1100)
....|..|+. -..+.++...+|.|..|-....-. +++...... .. ...........|..
T Consensus 157 ~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~Gq---LG~~~~~~~--~~------------p~~v~~~~~~~v~~ 215 (389)
T 3kci_A 157 RGIEVVDVAA----GGAHSACVTAAGDLYTWGKGRYGR---LGHSDSEDQ--LK------------PKLVEALQGHRVVD 215 (389)
T ss_dssp TTSCEEEEEE----CSSEEEEEETTSCEEEEECCGGGT---TCSSSCCCE--EE------------EEECGGGTTSCEEE
T ss_pred CCCeEEEEEe----CcCeEEEEeCCCeEEEeCCCCCCC---cCCCCCccc--cc------------ceEecccCCCeEEE
Confidence 1136777776 233467778899988886433100 000000000 00 00000001345666
Q ss_pred EEEecCCCCEEEEEEcCCcEEEEecCC
Q 001321 255 LCWASSSGSILAVGYIDGDILLWNTST 281 (1100)
Q Consensus 255 l~w~spdg~~l~sg~~DG~I~lWd~~~ 281 (1100)
++.- ....+.+....||.|..|-...
T Consensus 216 ia~G-~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 216 IACG-SGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEEC-CSSCEEEEEETTTEEEEEECCG
T ss_pred EEEc-CCCcEEEEEccCCEEEEEeCCC
Confidence 6622 3336778888999999997543
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=80.85 E-value=1.8 Score=43.82 Aligned_cols=98 Identities=9% Similarity=-0.036 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCceE---------EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGIEG---------LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~~~---------~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
.+..+||+|++.+-|+ .+|.++-.+....+. +-..+-.. ..++.|.++|.+-++ +|+.|.-|+-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 7779999999998888 678777766533111 11112222 589999999755444 679988887633
Q ss_pred Cc-e--e---eeeecC--CCeEEEEEecCCCEEEEEeCCCcE
Q 001321 108 RS-L--A---CCLKWE--SNITAFSVISGSHFMYIGDENGLM 141 (1100)
Q Consensus 108 ~~-~--l---~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~V 141 (1100)
.. - + ..+... ..+.++.++|++.+-++. +|.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 21 1 0 111111 368999999999887777 7753
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.69 E-value=28 Score=45.07 Aligned_cols=105 Identities=10% Similarity=0.184 Sum_probs=72.8
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceeeee-e--
Q 001321 40 ILAFDHIQRLLAIATLDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCL-K-- 115 (1100)
Q Consensus 40 ~la~sp~~~lLA~gs~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~~~-~-- 115 (1100)
+.-.+|..+.||.=. ...+.||+++..+.+-...-..+|..=.|..+ ..|+-++ +..|.-|++... .+...+ .
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 345678888888876 78999999987776655555667888888766 3455554 778999999653 222111 1
Q ss_pred --cCCCeEEEEEecCCCEEEEEe-------CCCcEEEEEEe
Q 001321 116 --WESNITAFSVISGSHFMYIGD-------ENGLMSVIKYD 147 (1100)
Q Consensus 116 --~~~~Vt~~~~s~~~~~l~~G~-------~dG~V~Iw~~d 147 (1100)
....|..-..+++.+|++..+ -.|.+.++..+
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 136789999999999877433 24667666665
No 343
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=79.01 E-value=29 Score=37.99 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=39.8
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCce--eeee-----ecCCCeEEEEEecC---CCEEEEEeC
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSL--ACCL-----KWESNITAFSVISG---SHFMYIGDE 137 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~--l~~~-----~~~~~Vt~~~~s~~---~~~l~~G~~ 137 (1100)
.-..|+|.|+|.+|+.+...+.|.+++...+.. +... ...+....++++|+ ..+|++...
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 357899999987455666789999998543211 1111 12345789999997 677777653
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=78.38 E-value=89 Score=40.63 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=52.7
Q ss_pred EEEEEcCCCCEEEEEeCCceEEEEecCCceEEEEeecCCCCCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEE
Q 001321 607 RALQFTSSGAKLAVGFECGRVAVLDMNLLSVLFFTDDISGSSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVII 686 (1100)
Q Consensus 607 tsLafSp~g~~LavGs~dG~V~vwD~~~~~~~~~~~~~~~~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~ 686 (1100)
.++..|+....+.+-+.-|.|.++|+.+++.+|..++ .+.+|-..+..... .=++
T Consensus 262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri---s~~~iF~~~~~~~~----------------------~g~~ 316 (1630)
T 1xi4_A 262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGETIFVTAPHEAT----------------------AGII 316 (1630)
T ss_pred eEEEeccccCEEEEEecCceEEEEecccchhhhhccc---cCCceEEeccCCCC----------------------CceE
Confidence 4788888888888899999999999999999987776 33444333222111 1156
Q ss_pred EEecceeEEEEeCCCCcccc
Q 001321 687 VLFKDAKISIVGGSSENMIS 706 (1100)
Q Consensus 687 ~gt~dg~v~v~d~~~g~~l~ 706 (1100)
+....|.|+-......++++
T Consensus 317 ~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 317 GVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred EEcCCceEEEEEEccchhhh
Confidence 66688888888766655553
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=77.48 E-value=6.8 Score=42.79 Aligned_cols=82 Identities=12% Similarity=-0.019 Sum_probs=46.8
Q ss_pred CCCEEEEE-eCCceEEEEecCCceEEEEeecCCC-CCCCeEEEEEeecccCccccCCCCCCCCCCCCCCCceEEEEEecc
Q 001321 614 SGAKLAVG-FECGRVAVLDMNLLSVLFFTDDISG-SSSPIISMTWTEFKNTHSLAKNPNHSEREVPVNPAEEVIIVLFKD 691 (1100)
Q Consensus 614 ~g~~LavG-s~dG~V~vwD~~~~~~~~~~~~~~~-~~~~V~sl~fs~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~gt~d 691 (1100)
++..+++. +.||.|+.+|..++...+......- ..+++.. .=.+.-.+ + ..--....+++|+.+
T Consensus 55 ~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~------~-------~~~~~~g~Vy~Gs~~ 120 (339)
T 2be1_A 55 TYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVND------S-------GKIVEDEKVYTGSMR 120 (339)
T ss_dssp SSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC-----------------------CCEEEEECEEE
T ss_pred CCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeec------c-------cccccCCEEEEEecC
Confidence 34444444 6899999999988866644433110 2222221 00000000 0 000023579999999
Q ss_pred eeEEEEeCCCCccccCCc
Q 001321 692 AKISIVGGSSENMISSSP 709 (1100)
Q Consensus 692 g~v~v~d~~~g~~l~~~~ 709 (1100)
|.+..+|..+|+++....
T Consensus 121 g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 121 TIMYTINMLNGEIISAFG 138 (339)
T ss_dssp EEEEEEETTTCCEEEEES
T ss_pred CEEEEEECCCCcEEEEEe
Confidence 999999999999986653
No 346
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=75.06 E-value=86 Score=32.86 Aligned_cols=106 Identities=7% Similarity=0.032 Sum_probs=50.0
Q ss_pred CEEEEEECC----CeEEEEeCCCceEEEeCCCCCC-E-EEEEEEeCCCEEEEEECC-----CcEEEEEcCCCceeeeeec
Q 001321 48 RLLAIATLD----GRIKVIGGDGIEGLLISPSQLP-Y-KNLEFLQNQGFLISITND-----NEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 48 ~lLA~gs~d----G~I~vw~~~~~~~~~~~~h~~~-V-~~l~fs~d~~~Lls~s~d-----~~I~vWd~~s~~~l~~~~~ 116 (1100)
.+++.|+.+ ..+.+||....+......-..+ . ..++ .-++..++.++.+ +.+.++|..+.+-......
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 344444432 3577777755543332221111 1 1122 2244444444433 4688999988764333221
Q ss_pred --CCCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeee
Q 001321 117 --ESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQ 155 (1100)
Q Consensus 117 --~~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~~ 155 (1100)
+..-.+++. .++...++|+.++. -.+|.|+....+...
T Consensus 96 p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 96 RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 111112222 25566666665432 246777766555543
No 347
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=73.23 E-value=69 Score=33.82 Aligned_cols=148 Identities=8% Similarity=-0.004 Sum_probs=69.3
Q ss_pred CCCEEEEEECC----CeEEEEeCCCceEEEeCCCCCCE--EEEEEEeCCCEEEEEEC---------CCcEEEEEcCCCce
Q 001321 46 IQRLLAIATLD----GRIKVIGGDGIEGLLISPSQLPY--KNLEFLQNQGFLISITN---------DNEIQVWSLESRSL 110 (1100)
Q Consensus 46 ~~~lLA~gs~d----G~I~vw~~~~~~~~~~~~h~~~V--~~l~fs~d~~~Lls~s~---------d~~I~vWd~~s~~~ 110 (1100)
++.+++.|+.+ ..+.+||....+-.....-..+- ..++. -++..++.++. .+.+.++|..+++-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 34555555532 46788887665544332211111 12222 24344444443 25689999988754
Q ss_pred eeeeecC---CCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 111 ACCLKWE---SNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 111 l~~~~~~---~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
......+ ..-.++. -++..+++|+.++. -.+|.|+..+.+....+ .++ ..+.. -..+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r~~-~~~~~~ 167 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PML-----------TRRIG-VGVAVL 167 (308)
T ss_dssp EECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCS-----------SCCBS-CEEEEE
T ss_pred eECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCC-----------ccccc-eEEEEE
Confidence 3332111 1122222 25566666654332 12466666555544321 111 11111 222333
Q ss_pred ccCCCCCEEEEEEcC-----CEEEEEEccCCEEE
Q 001321 185 HPNSSGNRVLIAYEN-----ALVILWDVSEAQII 213 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~d-----g~V~lwdl~~~~~~ 213 (1100)
++..+++|+.+ ..+.+||+.+.+-.
T Consensus 168 ----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 168 ----NRLLYAVGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp ----TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred ----CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence 35555555543 35678888777543
No 348
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=72.76 E-value=97 Score=32.43 Aligned_cols=162 Identities=11% Similarity=0.131 Sum_probs=94.9
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCce------EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCC
Q 001321 35 PATASILAFDH-IQRLLAIATLDGRIKVIGGDGIE------GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLES 107 (1100)
Q Consensus 35 ~~~v~~la~sp-~~~lLA~gs~dG~I~vw~~~~~~------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s 107 (1100)
...|..+.... +...+++.|.+|.|+-....... ..+.......+..+....+...|+..+..|.+..++...
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 34566554422 56799999999999999864321 112222344666666666667899999999988887632
Q ss_pred ---------CceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCC
Q 001321 108 ---------RSLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQP 178 (1100)
Q Consensus 108 ---------~~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (1100)
|...-.+.....|.++....+..++++.+++|.++...++. |......-...... ...+.
T Consensus 147 ip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e---------~~~~~R~gkGv~~i--~~~~~ 215 (276)
T 3no0_A 147 VPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEE---------IPKTNRGVKGTEVS--GTKDT 215 (276)
T ss_dssp SCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG---------SCCCCTTCCCEECC--CSSSC
T ss_pred CCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH---------cccCCCCCcceEEE--cCCCc
Confidence 11222233446677777767778999999999887766543 11111000000001 11244
Q ss_pred eEEEEeccCCCCCEEEEEEcCCEEEE--EEccC
Q 001321 179 VVGVLPHPNSSGNRVLIAYENALVIL--WDVSE 209 (1100)
Q Consensus 179 V~sv~f~P~~~g~~ll~~~~dg~V~l--wdl~~ 209 (1100)
+..+..- +....+++.+.+|.+.. +++.+
T Consensus 216 lv~~~~~--~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 216 LVDLIPI--KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEEE--SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEEe--CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 5555442 12334778888887666 66654
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=72.28 E-value=1e+02 Score=32.63 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=69.7
Q ss_pred EEEcCCCCEEEEEE----CCCeEEEEeCCCceEEEeCCCCCCEEEEEEEeCCCEEEEEEC-CCcEEEEEcCCCceeeeee
Q 001321 41 LAFDHIQRLLAIAT----LDGRIKVIGGDGIEGLLISPSQLPYKNLEFLQNQGFLISITN-DNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 41 la~sp~~~lLA~gs----~dG~I~vw~~~~~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~-d~~I~vWd~~s~~~l~~~~ 115 (1100)
.+|+++++.|+-.. .+..|+.-++++.+...+..+.. ..|+++++.|.-.+. ...|.+-++..+.......
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~ 184 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC
Confidence 47888999999876 34567777777765555544433 457888888887765 6789999988775433322
Q ss_pred cCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeee
Q 001321 116 WESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLF 154 (1100)
Q Consensus 116 ~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~ 154 (1100)
+... ..++|++.+|+-....+.-+|+..+.+.....
T Consensus 185 --~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~ 220 (302)
T 3s25_A 185 --CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV 220 (302)
T ss_dssp --SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE
T ss_pred --CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE
Confidence 3322 34669999988776543235566665544433
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.86 E-value=33 Score=43.22 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=33.4
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
.+.+++..++..+|++++.|+++++||+.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777788888999999999999999999999887763
No 351
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.32 E-value=1.2e+02 Score=32.41 Aligned_cols=199 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceEEEeC---------CCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcC-----CCce
Q 001321 45 HIQRLLAIATLDGRIKVIGGDGIEGLLIS---------PSQLPYKNLEFLQNQGFLISITNDNEIQVWSLE-----SRSL 110 (1100)
Q Consensus 45 p~~~lLA~gs~dG~I~vw~~~~~~~~~~~---------~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~-----s~~~ 110 (1100)
|+..++++.|.+|.|+--........... .-...+..+........++..+..|.+.-.... .+.-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Q ss_pred -------eeeeecCCCeEEEEEec---CCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeE
Q 001321 111 -------ACCLKWESNITAFSVIS---GSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVV 180 (1100)
Q Consensus 111 -------l~~~~~~~~Vt~~~~s~---~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~ 180 (1100)
.-.+.....|.++..-+ ...+++..+.+|.++...+.. ++...........-...+.+.
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~-----------~~~~r~~G~~~i~L~~~d~lv 154 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTD-----------FKAVKSRGVIVIKLNDKDFVT 154 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG-----------GCC----CEECBCCCTTCCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHH-----------hhccCCCcEEEEecCCCCEEE
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEE--ecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEe
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFV--GGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWA 258 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~ 258 (1100)
++.. .+....+++.+.+|.+..+++.+-..... .|.+...+.. ...|.++...
T Consensus 155 ~~~~--~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-----------------------~d~vv~~~~v 209 (312)
T 1suu_A 155 SAEI--VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-----------------------GDLFVKVLSV 209 (312)
T ss_dssp EEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-----------------------TCCEEEEEEC
T ss_pred EEEE--eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-----------------------CCEEEEEEEE
Q ss_pred cCCCCEEEEEEcCCcEEEEecC
Q 001321 259 SSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 259 spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
.++..+++.+..|.+...++.
T Consensus 210 -~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 210 -KENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp -TTCSEEEEEETTSEEEEEEGG
T ss_pred -CCCCeEEEEECCCceEEEEHH
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=69.85 E-value=61 Score=35.80 Aligned_cols=156 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCC----eEEEEeCCCc--eEEEeC---C---------CCCCEEEEEEEe-C-CCEEE
Q 001321 35 PATASILAFDH--IQRLLAIATLDG----RIKVIGGDGI--EGLLIS---P---------SQLPYKNLEFLQ-N-QGFLI 92 (1100)
Q Consensus 35 ~~~v~~la~sp--~~~lLA~gs~dG----~I~vw~~~~~--~~~~~~---~---------h~~~V~~l~fs~-d-~~~Ll 92 (1100)
...|.+|+++| .+.+.| |+..| .|....-.+. +.+... + +...|.+|++.| + ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 34699999999 555555 55455 5555533222 211110 1 112477888886 2 35566
Q ss_pred EEECCCcEEEEEcCCC--ceeeee-----------------ecCCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCe
Q 001321 93 SITNDNEIQVWSLESR--SLACCL-----------------KWESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGK 152 (1100)
Q Consensus 93 s~s~d~~I~vWd~~s~--~~l~~~-----------------~~~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~ 152 (1100)
.+...+-|...+=... +.+... .....|.++.++|. ...+++|...+.| +..+-...+
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl--~~s~DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGV--FESTDAGTD 210 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEE--EEESSTTSS
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCE--EEECCCCCC
Confidence 6655554443321111 111111 01235789999984 4567777655533 544332223
Q ss_pred eeeeceeecccccccccCCCCCC---CCCeEEEEeccCCCCCEEEEEEcCC
Q 001321 153 LFQLPYNISADALSEKAGFPLLS---HQPVVGVLPHPNSSGNRVLIAYENA 200 (1100)
Q Consensus 153 l~~~~~~i~~~~~~~~~~~~~~~---~~~V~sv~f~P~~~g~~ll~~~~dg 200 (1100)
... +.. .. ....++... ...+.+|.++|.+.+ .|+++...+
T Consensus 211 W~~----~~~-~~-~~~~~p~~~~~~g~~~~~i~~~~~~~~-~l~vg~~~g 254 (394)
T 3b7f_A 211 WKP----LNR-GC-AANFLPDPNVEFGHDPHCVVQHPAAPD-ILYQQNHCG 254 (394)
T ss_dssp CEE----CCT-TC-CCTTSSSSSSSSCBCEEEEEECSSSTT-EEEEEETTE
T ss_pred ceE----CCC-Cc-cccccCCCccccCcceeEEEECCCCCC-EEEEEcCCe
Confidence 322 110 00 000011000 135899999886334 477776655
No 353
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=68.42 E-value=91 Score=32.87 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCceeeeeecC--CCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCC
Q 001321 98 NEIQVWSLESRSLACCLKWE--SNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFP 172 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~ 172 (1100)
+.+.++|..+.+-......+ ..-.++++. ++...++|+.++. -.+|.|+....+.... +. .+
T Consensus 137 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~--------~p 203 (308)
T 1zgk_A 137 NSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI----TA--------MN 203 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC----CC--------CS
T ss_pred ccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC----CC--------CC
Confidence 56899999887543332222 111122222 5566666665432 1346666655554432 10 11
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEEcC-----CEEEEEEccCCEEE
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAYEN-----ALVILWDVSEAQII 213 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~~d-----g~V~lwdl~~~~~~ 213 (1100)
.++ .....+.+ ++..+++|+.+ ..+.+||+.+.+-.
T Consensus 204 ~~r-~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 204 TIR-SGAGVCVL----HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp SCC-BSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred Ccc-ccceEEEE----CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 111 11223333 45555666544 45788898887644
No 354
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=68.40 E-value=1.2e+02 Score=31.91 Aligned_cols=111 Identities=8% Similarity=0.121 Sum_probs=50.5
Q ss_pred cCCCCEEEEEEC----CC-------eEEEEeCCCceEEEeCCCCCC--EEEEEEEeCCCEEEEEECC-------CcEEEE
Q 001321 44 DHIQRLLAIATL----DG-------RIKVIGGDGIEGLLISPSQLP--YKNLEFLQNQGFLISITND-------NEIQVW 103 (1100)
Q Consensus 44 sp~~~lLA~gs~----dG-------~I~vw~~~~~~~~~~~~h~~~--V~~l~fs~d~~~Lls~s~d-------~~I~vW 103 (1100)
..++.+++.|+. ++ .+.+||....+-.....-..+ -..++.. ++...+.++.+ +.+.++
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 345666666662 11 166666655444333221111 1122222 44455555533 358888
Q ss_pred EcCCCceeeeeecCCCe-EEEEEecCCCEEEEEeCC-C---cEEEEEEecCCCeeee
Q 001321 104 SLESRSLACCLKWESNI-TAFSVISGSHFMYIGDEN-G---LMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 104 d~~s~~~l~~~~~~~~V-t~~~~s~~~~~l~~G~~d-G---~V~Iw~~d~~~~~l~~ 155 (1100)
|..+.+-......+... ...++..++...+.|+.+ + .-.+|.||..+.+...
T Consensus 133 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~ 189 (318)
T 2woz_A 133 DPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD 189 (318)
T ss_dssp ETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred eCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence 98887544332222111 111122455666666531 1 1125667766665543
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=67.19 E-value=17 Score=42.12 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=72.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCce-------------EEEeCCCCCCEEEEEEEeCCCEEEEEECCC
Q 001321 33 GIPATASILAFDHIQRLLAIATL-DGRIKVIGGDGIE-------------GLLISPSQLPYKNLEFLQNQGFLISITNDN 98 (1100)
Q Consensus 33 G~~~~v~~la~sp~~~lLA~gs~-dG~I~vw~~~~~~-------------~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~ 98 (1100)
-+|-.+..+..+|||++++++.. +.++-|++..... +....+-...-.+.+|.++|.-..|.--|.
T Consensus 320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidS 399 (638)
T 3sbq_A 320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDS 399 (638)
T ss_dssp EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecc
Confidence 45677888999999999877654 6899999976321 233444455788999999984334445799
Q ss_pred cEEEEEcCCC----------ceeeeeecCCCeEEEEE------ecCCCEEEEEe
Q 001321 99 EIQVWSLESR----------SLACCLKWESNITAFSV------ISGSHFMYIGD 136 (1100)
Q Consensus 99 ~I~vWd~~s~----------~~l~~~~~~~~Vt~~~~------s~~~~~l~~G~ 136 (1100)
.|.-||+... .++..+.-...+-.+.. .++++||++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999763 45555544455555555 46777877664
No 356
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=66.54 E-value=1.1e+02 Score=32.18 Aligned_cols=150 Identities=8% Similarity=-0.006 Sum_probs=71.1
Q ss_pred CCCEEEEEECC------CeEEEEeCCCceEEEeCCCCCC-EEEEEEEeCCCEEEEEEC---------CCcEEEEEcCCCc
Q 001321 46 IQRLLAIATLD------GRIKVIGGDGIEGLLISPSQLP-YKNLEFLQNQGFLISITN---------DNEIQVWSLESRS 109 (1100)
Q Consensus 46 ~~~lLA~gs~d------G~I~vw~~~~~~~~~~~~h~~~-V~~l~fs~d~~~Lls~s~---------d~~I~vWd~~s~~ 109 (1100)
++++++.|+.+ ..+.+||....+-.....-..+ ..+.+..-++...+.++. -+.+.+||+.+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 45566666544 4567777655443332221111 111111224444444432 4568999998885
Q ss_pred eeeeeecC--CCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEe
Q 001321 110 LACCLKWE--SNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLP 184 (1100)
Q Consensus 110 ~l~~~~~~--~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f 184 (1100)
-......+ ..-.++.. -++..+++|+.++. -.+|.||....+....+ .++ ..+ ....++.+
T Consensus 181 W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-----------~~r-~~~~~~~~ 246 (306)
T 3ii7_A 181 WTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS-PMP-----------WKG-VTVKCAAV 246 (306)
T ss_dssp EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECC-CCS-----------CCB-SCCEEEEE
T ss_pred EEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC-CCC-----------CCc-cceeEEEE
Confidence 43332222 11112222 25666666665432 13466666555544320 111 111 22233333
Q ss_pred ccCCCCCEEEEEEcC-----CEEEEEEccCCEEE
Q 001321 185 HPNSSGNRVLIAYEN-----ALVILWDVSEAQII 213 (1100)
Q Consensus 185 ~P~~~g~~ll~~~~d-----g~V~lwdl~~~~~~ 213 (1100)
++..+++|+.+ ..+.+||..+.+-.
T Consensus 247 ----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 247 ----GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp ----TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred ----CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 45556666643 46788998887543
No 357
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=64.37 E-value=23 Score=38.55 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=69.5
Q ss_pred CEEEEEECCCcEEEEEcCCCceeeeeecC--CCeEEEEEe--cCCCEEEEE--eCCCcEEEEEEecCCCeeeeeceeecc
Q 001321 89 GFLISITNDNEIQVWSLESRSLACCLKWE--SNITAFSVI--SGSHFMYIG--DENGLMSVIKYDADEGKLFQLPYNISA 162 (1100)
Q Consensus 89 ~~Lls~s~d~~I~vWd~~s~~~l~~~~~~--~~Vt~~~~s--~~~~~l~~G--~~dG~V~Iw~~d~~~~~l~~~~~~i~~ 162 (1100)
..++.++.||.|.-+|..+|+.+..+... .++....-. +....++++ ..||.| +-++..+|... .++.++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l--~a~~~~~G~~~-~~~~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNI--YYFNAHQGLQK-LPLSIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEE--EEEETTTEEEE-EEEEHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEE--EEEECCCCcEE-eeecccc
Confidence 57888999999999999999999888554 222221100 112345554 579966 44555455333 2344442
Q ss_pred cccccccCCCCCCCCCeEEEEeccCC-------CCCEEEEEEcCCEEEEEEccCCEEEEEecC
Q 001321 163 DALSEKAGFPLLSHQPVVGVLPHPNS-------SGNRVLIAYENALVILWDVSEAQIIFVGGG 218 (1100)
Q Consensus 163 ~~~~~~~~~~~~~~~~V~sv~f~P~~-------~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~ 218 (1100)
.. .. .++.. .-.|-- .+..+++|+.+|.+...|+.+|+++..+..
T Consensus 88 lv--~~--------SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LV--ST--------SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HH--TT--------CSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ce--ec--------ccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 11 00 22221 111111 233599999999999999999998877643
No 358
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=61.58 E-value=1.6e+02 Score=30.88 Aligned_cols=155 Identities=10% Similarity=0.015 Sum_probs=74.9
Q ss_pred EEcCCCCEEEEEEC-----C------CeEEEEeCCCceEEEeCCCCCCEE--EEEEEeCCCEEEEEEC--------CCcE
Q 001321 42 AFDHIQRLLAIATL-----D------GRIKVIGGDGIEGLLISPSQLPYK--NLEFLQNQGFLISITN--------DNEI 100 (1100)
Q Consensus 42 a~sp~~~lLA~gs~-----d------G~I~vw~~~~~~~~~~~~h~~~V~--~l~fs~d~~~Lls~s~--------d~~I 100 (1100)
+...++.+++.|+. . ..+.+||....+-....+-..+-. .++.. ++...+.++. -+.+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 33457788888873 1 237788886655443322222211 12222 4344444442 1569
Q ss_pred EEEEcCCCceeeeeecCC-CeEEEEEecCCCEEEEEeC-CC---cEEEEEEecCCCeeeeeceeecccccccccCCCCCC
Q 001321 101 QVWSLESRSLACCLKWES-NITAFSVISGSHFMYIGDE-NG---LMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLS 175 (1100)
Q Consensus 101 ~vWd~~s~~~l~~~~~~~-~Vt~~~~s~~~~~l~~G~~-dG---~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~ 175 (1100)
.++|..+.+-......+. .-...++..++...+.|+. ++ .-.+|.|+..+.+.... +. .|.++
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~----~~--------~p~~r 187 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL----AP--------MQTAR 187 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEEC----CC--------CSSCC
T ss_pred EEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEEC----CC--------CCCch
Confidence 999998875433222221 1111122245566666665 22 11346666655554432 11 11111
Q ss_pred CCCeEEEEeccCCCCCEEEEEEcCC-----EEEEEEccCCEEEE
Q 001321 176 HQPVVGVLPHPNSSGNRVLIAYENA-----LVILWDVSEAQIIF 214 (1100)
Q Consensus 176 ~~~V~sv~f~P~~~g~~ll~~~~dg-----~V~lwdl~~~~~~~ 214 (1100)
..-.++.+ ++..+++|+.++ .+.+||..+.+-..
T Consensus 188 -~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 188 -SLFGATVH----DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp -BSCEEEEE----TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred -hceEEEEE----CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 11222333 455566666554 57788888875443
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=61.53 E-value=1.8e+02 Score=31.85 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=73.8
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEeCCCceEEEeC-------------------CCCCCEEEEEEEeC-CCEEEEE
Q 001321 37 TASILAFDHI--QRLLAIATLDGRIKVIGGDGIEGLLIS-------------------PSQLPYKNLEFLQN-QGFLISI 94 (1100)
Q Consensus 37 ~v~~la~sp~--~~lLA~gs~dG~I~vw~~~~~~~~~~~-------------------~h~~~V~~l~fs~d-~~~Lls~ 94 (1100)
.|.+++++|. ...|.+++..+.|...+-.+....... .....|..|.+.|. ...|..+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg 195 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIG 195 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEE
Confidence 5778999972 455666666777776654333222111 12235888999873 3444444
Q ss_pred ECCCcEEEEEcCCCceeeeeec--------------CCCeEEEEEecC-CCEEEEEeCCCcEEEEEEecCCCeeeeecee
Q 001321 95 TNDNEIQVWSLESRSLACCLKW--------------ESNITAFSVISG-SHFMYIGDENGLMSVIKYDADEGKLFQLPYN 159 (1100)
Q Consensus 95 s~d~~I~vWd~~s~~~l~~~~~--------------~~~Vt~~~~s~~-~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~ 159 (1100)
..++-|...+ ..++--..+.. ...+.++.++|. ...++++...| |+..+....+....
T Consensus 196 ~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g---l~~s~D~G~tW~~~--- 268 (394)
T 3b7f_A 196 MSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG---IYRMDRREGVWKRI--- 268 (394)
T ss_dssp EETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE---EEEEETTTTEEECG---
T ss_pred ECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe---EEEeCCCCCcceEC---
Confidence 4344333322 22221111110 124889999986 46788887665 35444333333321
Q ss_pred ecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE
Q 001321 160 ISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1100)
Q Consensus 160 i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~ 197 (1100)
.. . .+......+.++.++|.+.+. ++++.
T Consensus 269 -~~-~------l~~~~~~~~~~i~~~p~~~~~-l~~~t 297 (394)
T 3b7f_A 269 -GD-A------MPREVGDIGFPIVVHQRDPRT-VWVFP 297 (394)
T ss_dssp -GG-G------SCTTTCSCEEEEEECSSCTTC-EEEEE
T ss_pred -CC-C------CCCCCccceEEEEECCCCCCE-EEEEe
Confidence 10 0 111001235678888865666 55554
No 360
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=58.39 E-value=1.8e+02 Score=30.46 Aligned_cols=139 Identities=10% Similarity=-0.044 Sum_probs=64.0
Q ss_pred CeEEEEeCCCceEEE-eCCCC-CCEEEEEEEeCCCEEEEEEC-----C------CcEEEEEcCCCceeeeeecCCCe--E
Q 001321 57 GRIKVIGGDGIEGLL-ISPSQ-LPYKNLEFLQNQGFLISITN-----D------NEIQVWSLESRSLACCLKWESNI--T 121 (1100)
Q Consensus 57 G~I~vw~~~~~~~~~-~~~h~-~~V~~l~fs~d~~~Lls~s~-----d------~~I~vWd~~s~~~l~~~~~~~~V--t 121 (1100)
..+.+||....+-.. ..+.. ....+-....++..++.++. . +.+.++|..+++-......+..- .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 567788876554332 11211 11222223345556666652 1 23778898887643322222111 1
Q ss_pred EEEEecCCCEEEEEeCC------CcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEE
Q 001321 122 AFSVISGSHFMYIGDEN------GLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLI 195 (1100)
Q Consensus 122 ~~~~s~~~~~l~~G~~d------G~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~ 195 (1100)
+++. -++...++|+.+ ..-.+|.|+..+++.... +. .|.++.. -..+.. ++..+++
T Consensus 93 ~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~----~~--------~p~~r~~-~~~~~~----~~~iyv~ 154 (315)
T 4asc_A 93 GLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES----DP--------LPYVVYG-HTVLSH----MDLVYVI 154 (315)
T ss_dssp EEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC----CC--------CSSCCBS-CEEEEE----TTEEEEE
T ss_pred eEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC----CC--------CCCcccc-eeEEEE----CCEEEEE
Confidence 1222 245555666532 112356677655554432 10 1111112 222233 4555566
Q ss_pred EEc-C-----CEEEEEEccCCEEE
Q 001321 196 AYE-N-----ALVILWDVSEAQII 213 (1100)
Q Consensus 196 ~~~-d-----g~V~lwdl~~~~~~ 213 (1100)
|+. + ..+.+||..+.+-.
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~ 178 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWK 178 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEE
T ss_pred eCCCCCCcccceEEEEeCCCCeEE
Confidence 654 2 36778888877543
No 361
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=55.78 E-value=83 Score=36.48 Aligned_cols=88 Identities=19% Similarity=0.213 Sum_probs=55.9
Q ss_pred eeeecCCCeEEEEEecCCCEEEEEeC-CCcEEEEEEecC----CCeeeeeceeecccccccccCCCCCCCCCeEEEEecc
Q 001321 112 CCLKWESNITAFSVISGSHFMYIGDE-NGLMSVIKYDAD----EGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHP 186 (1100)
Q Consensus 112 ~~~~~~~~Vt~~~~s~~~~~l~~G~~-dG~V~Iw~~d~~----~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P 186 (1100)
..+.-+.....+.++|+++++++++. +.+|.|++++.. .+++.. +. ......+.. .......+|.+
T Consensus 317 ~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~-----~~---~~~~ae~e~-GlGPlHt~Fd~ 387 (638)
T 3sbq_A 317 RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLAD-----PR---DVIVGEPEL-GLGPLHTTFDG 387 (638)
T ss_dssp EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSC-----GG---GGEEECCBC-CSCEEEEEECS
T ss_pred EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccC-----cc---cceEeeccC-CCcccEEEECC
Confidence 33344556778999999999888764 788999888731 111100 00 000011111 14578899966
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCC
Q 001321 187 NSSGNRVLIAYENALVILWDVSEA 210 (1100)
Q Consensus 187 ~~~g~~ll~~~~dg~V~lwdl~~~ 210 (1100)
+|..+.+-+-|..|+.|++...
T Consensus 388 --~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 388 --RGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp --SSEEEEEETTTTEEEEEEHHHH
T ss_pred --CCceEeeeeecceEEEEeccHH
Confidence 6765667778999999999864
No 362
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=54.34 E-value=2.4e+02 Score=33.87 Aligned_cols=111 Identities=7% Similarity=0.059 Sum_probs=56.6
Q ss_pred CCCCEEEEEECC----CeEEEEeCCCceEEEeC-C-------CCCCEEEEEEEe-CCCEEEEEECC------CcEEEEEc
Q 001321 45 HIQRLLAIATLD----GRIKVIGGDGIEGLLIS-P-------SQLPYKNLEFLQ-NQGFLISITND------NEIQVWSL 105 (1100)
Q Consensus 45 p~~~lLA~gs~d----G~I~vw~~~~~~~~~~~-~-------h~~~V~~l~fs~-d~~~Lls~s~d------~~I~vWd~ 105 (1100)
.++.+++.|+.+ ..+.+||....+..... + ....--+++... ++..++.++.+ +.+.++|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777643 45777776544333222 1 111112233332 54555555432 46889999
Q ss_pred CCCceeee--eecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeee
Q 001321 106 ESRSLACC--LKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQ 155 (1100)
Q Consensus 106 ~s~~~l~~--~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~ 155 (1100)
.+.+-... +..+..-.++++..++..+++|+.++.-.+|.||..+.+...
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD 527 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence 88643322 222222223333347777777776442255777776666553
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.09 E-value=4.1e+02 Score=33.20 Aligned_cols=134 Identities=11% Similarity=0.129 Sum_probs=72.5
Q ss_pred EEEEEE--e--CCCEEEEEECCCcEEEEEcCCCce-----------eeee---ecCCCeEEEEEecCCCEEEEEeCCCcE
Q 001321 80 KNLEFL--Q--NQGFLISITNDNEIQVWSLESRSL-----------ACCL---KWESNITAFSVISGSHFMYIGDENGLM 141 (1100)
Q Consensus 80 ~~l~fs--~--d~~~Lls~s~d~~I~vWd~~s~~~-----------l~~~---~~~~~Vt~~~~s~~~~~l~~G~~dG~V 141 (1100)
.+++|. + +.-.+..++..|.+.-..+...-. ...+ ......-..-..-+...++++..||.+
T Consensus 114 ~~v~f~d~~~~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~~~p~~f~~r~p~~l~av~~~~l~Vsl~dGgL 193 (950)
T 4gq2_M 114 DGVAFSFSEHSDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLCYRPISFLNQKPDLMAAISTSEICVSFFNGGL 193 (950)
T ss_dssp EEEEEEEETGGGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEEECCGGGTTSCEEEEEECSSSEEEEEETTSCE
T ss_pred CceEEeccCCCCeEEEEEEcCCCCEEEEEECHHHccCccccccccccccccCcCccCCCceEEEEEcCCeEEEEECCCCE
Confidence 456775 2 334566778888877776643211 1111 111122222222346678888888877
Q ss_pred EEEEEecCCCeeeeeceeecccccccccC-CC-------CCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEE
Q 001321 142 SVIKYDADEGKLFQLPYNISADALSEKAG-FP-------LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQII 213 (1100)
Q Consensus 142 ~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~-~~-------~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~ 213 (1100)
--.+.+...+......|.-.+ +++...+ ++ -.....+.++...+ +..++++-+.|+.+|+||+.++.++
T Consensus 194 lrl~r~~~~~~~~~~~f~~~s-~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 194 TKIILNPKDASHYEQHIDDSS-YLFSLKKYLSLQAFKADYRSPNTIISMIFLS--TYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp EEEEEETTTTEEEEEEECCCC-CCCBCC-------CCSSCCCTTCEEEEEEET--TTTEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEecCCCCCcceeeecCCc-HHHhhhhhcccccCCCCCCCcceEEEEeecC--CCcEEEEEECCCEEEEEECCCCCeE
Confidence 544444444443322121111 1111000 11 11234677777755 5677999999999999999999887
Q ss_pred EEe
Q 001321 214 FVG 216 (1100)
Q Consensus 214 ~~~ 216 (1100)
...
T Consensus 271 ~t~ 273 (950)
T 4gq2_M 271 ETI 273 (950)
T ss_dssp EEE
T ss_pred eee
Confidence 654
No 364
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=53.71 E-value=2.3e+02 Score=30.26 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCceeeee--ecCCCe-EEEEEecCCCEEEEEeC
Q 001321 98 NEIQVWSLESRSLACCL--KWESNI-TAFSVISGSHFMYIGDE 137 (1100)
Q Consensus 98 ~~I~vWd~~s~~~l~~~--~~~~~V-t~~~~s~~~~~l~~G~~ 137 (1100)
+.+.++|..+.+-...- .....- .++++. ++..+++|+.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~ 209 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGE 209 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeee
Confidence 57999999887543332 222222 233332 4555566653
No 365
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=52.34 E-value=2.7e+02 Score=30.50 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=82.9
Q ss_pred CCEEEEEECCCeEEEEeCCCc---------e--E-E-EeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCc-e--
Q 001321 47 QRLLAIATLDGRIKVIGGDGI---------E--G-L-LISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRS-L-- 110 (1100)
Q Consensus 47 ~~lLA~gs~dG~I~vw~~~~~---------~--~-~-~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~-~-- 110 (1100)
....+.-+.||.|+.|+.... . . . +.......++.++++....+.+..+.++.|..|-....- +
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 455566678999999985321 1 1 1 111233467778888887889999999999999653311 0
Q ss_pred --------eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCC------CeeeeeceeecccccccccCCCCCCC
Q 001321 111 --------ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADE------GKLFQLPYNISADALSEKAGFPLLSH 176 (1100)
Q Consensus 111 --------l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~------~~l~~~~~~i~~~~~~~~~~~~~~~~ 176 (1100)
-..+..-..+..+.+.....+.++-..+|.|+.|-..... ......|..++.. ..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~-----------~~ 210 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL-----------QG 210 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG-----------TT
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc-----------CC
Confidence 0111111112233444456677777889999888754310 0001111222211 11
Q ss_pred CCeEEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
..|..|+.-. ...+.++-..+|.|..|-..
T Consensus 211 ~~v~~ia~G~--g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 211 HRVVDIACGS--GDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp SCEEEEEECC--SSCEEEEEETTTEEEEEECC
T ss_pred CeEEEEEEcC--CCcEEEEEccCCEEEEEeCC
Confidence 4577776621 12456777889988888643
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=49.72 E-value=1.4e+02 Score=33.84 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=56.9
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEeCCCc---eEEEeC----------CCCCCEEEEEEEeC----CCEEEEEECC-
Q 001321 37 TASILAFDHIQR-LLAIATLDGRIKVIGGDGI---EGLLIS----------PSQLPYKNLEFLQN----QGFLISITND- 97 (1100)
Q Consensus 37 ~v~~la~sp~~~-lLA~gs~dG~I~vw~~~~~---~~~~~~----------~h~~~V~~l~fs~d----~~~Lls~s~d- 97 (1100)
.+..|+|.|+++ .|.++...|+|++++.++. +.+.-. ........|+|.|+ +.+.++.+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 567899999996 5666788999999976432 111111 11356788999985 4444444421
Q ss_pred -----------CcEEEEEcCC----------Cceeeeeec---CCCeEEEEEecCCCEEE
Q 001321 98 -----------NEIQVWSLES----------RSLACCLKW---ESNITAFSVISGSHFMY 133 (1100)
Q Consensus 98 -----------~~I~vWd~~s----------~~~l~~~~~---~~~Vt~~~~s~~~~~l~ 133 (1100)
..|.-|.+.. .+.+..... ......|+|.|++.+.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv 154 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYI 154 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEE
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEE
Confidence 1344466542 122222221 12467899999885433
No 367
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=48.99 E-value=2.2e+02 Score=34.23 Aligned_cols=66 Identities=8% Similarity=0.030 Sum_probs=35.3
Q ss_pred CCCEEEEEECCC--cEEEEEcCCCceeeeee------cCCCeEEEEEecC-CCEEEEEeC--CC---cEEEEEEecCCCe
Q 001321 87 NQGFLISITNDN--EIQVWSLESRSLACCLK------WESNITAFSVISG-SHFMYIGDE--NG---LMSVIKYDADEGK 152 (1100)
Q Consensus 87 d~~~Lls~s~d~--~I~vWd~~s~~~l~~~~------~~~~Vt~~~~s~~-~~~l~~G~~--dG---~V~Iw~~d~~~~~ 152 (1100)
++..++.++.++ .+.+||..+.+-..... ....-.++.+... +..++.|+. +| .-.+|.|+....+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 656666665433 79999998875433221 1122344555655 556666654 22 1234555544444
No 368
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=46.90 E-value=3.3e+02 Score=30.03 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=74.4
Q ss_pred EECCCeEEEEeCCC----------ce--EEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ce---------
Q 001321 53 ATLDGRIKVIGGDG----------IE--GLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SL--------- 110 (1100)
Q Consensus 53 gs~dG~I~vw~~~~----------~~--~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~--------- 110 (1100)
-+.||.|+.|+... .. .....+.-..|..| +-.+.+.+....||.|..|=.... ++
T Consensus 39 l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~v--a~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~ 116 (423)
T 3mvd_K 39 RTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDI--SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116 (423)
T ss_dssp CCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEE--EECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTS
T ss_pred ecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEE--eeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcc
Confidence 35678888886522 11 11122222346444 455667888999999999975432 11
Q ss_pred ---eeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEE-ecCCCeeee-------eceeecccccccccCCCCCCCCCe
Q 001321 111 ---ACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKY-DADEGKLFQ-------LPYNISADALSEKAGFPLLSHQPV 179 (1100)
Q Consensus 111 ---l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~-d~~~~~l~~-------~~~~i~~~~~~~~~~~~~~~~~~V 179 (1100)
-........|..++ ....+.++-..+|.|+.|-. ....+++-. .|..+. ....|
T Consensus 117 ~~~P~~v~~~~~i~~va--~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~-------------~~~~i 181 (423)
T 3mvd_K 117 ESKPDLIDLPGKALCIS--AGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM-------------EGTVC 181 (423)
T ss_dssp SSSCEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS-------------TTCCE
T ss_pred ccCCeEEcCCCCEEEEE--cCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec-------------CCCcE
Confidence 01112234555444 45566777788999988875 122233321 011111 12467
Q ss_pred EEEEeccCCCCCEEEEEEcCCEEEEEEcc
Q 001321 180 VGVLPHPNSSGNRVLIAYENALVILWDVS 208 (1100)
Q Consensus 180 ~sv~f~P~~~g~~ll~~~~dg~V~lwdl~ 208 (1100)
..|+. -..+.++-..+|.|..|-..
T Consensus 182 ~~va~----G~~hs~alt~~G~v~~wG~n 206 (423)
T 3mvd_K 182 CSIAS----GADHLVILTTAGKVFTVGCA 206 (423)
T ss_dssp EEEEE----CSSEEEEEETTSCEEEEECC
T ss_pred EEEec----CCCeEEEEecCCeEEEeeCC
Confidence 78876 23346777789988888644
No 369
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=46.23 E-value=2.8e+02 Score=28.99 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=52.7
Q ss_pred CCCEEEEEECC-------CeEEEEeCCCceEEEeCCCCCCEE-EEEEEeCCCEEEEEEC------CCcEEEEEcCCCcee
Q 001321 46 IQRLLAIATLD-------GRIKVIGGDGIEGLLISPSQLPYK-NLEFLQNQGFLISITN------DNEIQVWSLESRSLA 111 (1100)
Q Consensus 46 ~~~lLA~gs~d-------G~I~vw~~~~~~~~~~~~h~~~V~-~l~fs~d~~~Lls~s~------d~~I~vWd~~s~~~l 111 (1100)
++++.+.|+.+ ..+.+||....+-.....-..+.. +-+...++...+.++. -+.+.++|+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 45666666653 357777776554443332222211 1112234444444442 246999999887543
Q ss_pred eee--ecCCCeEEEEEecCCCEEEEEeCCCc---EEEEEEecCCCeee
Q 001321 112 CCL--KWESNITAFSVISGSHFMYIGDENGL---MSVIKYDADEGKLF 154 (1100)
Q Consensus 112 ~~~--~~~~~Vt~~~~s~~~~~l~~G~~dG~---V~Iw~~d~~~~~l~ 154 (1100)
... ..+..-.+++. -++..+++|+.++. -.+|.|+..+.+..
T Consensus 189 ~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 322 22211122222 35566666654332 24566776555544
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.11 E-value=48 Score=42.82 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=32.2
Q ss_pred CEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeee
Q 001321 78 PYKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLK 115 (1100)
Q Consensus 78 ~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~ 115 (1100)
.+.+++..++..+|++.+.|++++|||+.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788999999999999999999998887764
No 371
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=45.52 E-value=1.4e+02 Score=31.32 Aligned_cols=142 Identities=11% Similarity=0.074 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCC-ceEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCCceee-ee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDG-IEGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESRSLAC-CL 114 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~-~~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~-~~ 114 (1100)
.|..++......+ .-+ ||.|+.|+... .++-........|..++...+ +.+... |+.|..|-......+. -.
T Consensus 103 ~v~~ia~G~~hs~--al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~ 176 (282)
T 3qhy_B 103 GVDAIAAGAWASY--ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPA 176 (282)
T ss_dssp SEEEEEEETTEEE--EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CeEEEECcCCEEE--EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCce
Confidence 5666666544333 334 89999998743 221111222345666654443 344455 7888888765432221 11
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.....|..++.. ..+.++- .+|.|+.|-.... +++- +|. .....|..|+- ..... ++
T Consensus 177 ~~~~~v~~i~~G--~~hs~al-~~G~v~~wG~n~~-gqlg-----~p~-----------~~~~~v~~i~~--G~~h~-~a 233 (282)
T 3qhy_B 177 EAQSGVDDVAGG--IFHSLAL-KDGKVIAWGDNRY-KQTT-----VPT-----------EALSGVSAIAS--GEWYS-LA 233 (282)
T ss_dssp GGGSSEEEEEEC--SSEEEEE-ETTEEEEEECCTT-STTC-----CCG-----------GGGSSCCEEEE--CSSCE-EE
T ss_pred ecCCCeEEEEec--CCEEEEE-ECCeEEEEECCCC-CCCC-----CCc-----------ccCCCceEEEc--CCCEE-EE
Confidence 223456665543 3333333 5898877765432 2221 111 11145677766 22333 34
Q ss_pred EEEcCCEEEEEEccC
Q 001321 195 IAYENALVILWDVSE 209 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~~ 209 (1100)
.. +|.|..|-...
T Consensus 234 l~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 234 LK--NGKVIAWGSSR 246 (282)
T ss_dssp EE--TTEEEEESTTC
T ss_pred EE--CCEEEEecCCC
Confidence 33 89888886543
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=44.88 E-value=5e+02 Score=31.54 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=81.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCceEEEeCCC-------CCCEEEEEEEeCC-CEEEEEECCCc----EE
Q 001321 35 PATASILAFDHI-QRLLAIATLDGRIKVIGGDGIEGLLISPS-------QLPYKNLEFLQNQ-GFLISITNDNE----IQ 101 (1100)
Q Consensus 35 ~~~v~~la~sp~-~~lLA~gs~dG~I~vw~~~~~~~~~~~~h-------~~~V~~l~fs~d~-~~Lls~s~d~~----I~ 101 (1100)
.+.|.+|+++|. ...+.+++..|.|....-.+..-.....+ ...|..|++.|.. ..+..+..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999996 45667788778777766544443333332 2479999998842 33444432211 33
Q ss_pred EEE-cCCCceeeeeec--------CC--CeEEEEEecCC-CEEEEEeCCCcEEEEEEecCCCe-eeeeceeecccccccc
Q 001321 102 VWS-LESRSLACCLKW--------ES--NITAFSVISGS-HFMYIGDENGLMSVIKYDADEGK-LFQLPYNISADALSEK 168 (1100)
Q Consensus 102 vWd-~~s~~~l~~~~~--------~~--~Vt~~~~s~~~-~~l~~G~~dG~V~Iw~~d~~~~~-l~~~~~~i~~~~~~~~ 168 (1100)
||- ...++--..... ++ .+.+++++|.. +.++++...+.| |.-. +.++ .... ...+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~-DgG~TW~~~-~~~~~~----- 164 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSS-DRAKTWTNV-TSIPDA----- 164 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEES-STTSSCEEE-TTSCCC-----
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEEC-CCCcccCCC-ccCccc-----
Confidence 443 333322111111 11 35678888763 577777755544 4432 2222 2211 001100
Q ss_pred cCCCCCCCCCeEEEEeccCCCCCEEEEEEcC
Q 001321 169 AGFPLLSHQPVVGVLPHPNSSGNRVLIAYEN 199 (1100)
Q Consensus 169 ~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~d 199 (1100)
. .....+..|.++|.+.+. ++++..+
T Consensus 165 ---~-~~~~~~~~i~~~p~~~~~-~~~~~~~ 190 (789)
T 1sqj_A 165 ---F-TNGIGYTSVIFDPERNGT-IYASATA 190 (789)
T ss_dssp ---C-STTTCEEEEEECTTSTTC-EEEEESS
T ss_pred ---c-CCCCCeEEEEECCCCCCE-EEEEEcC
Confidence 0 011458899999975444 6666654
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=40.70 E-value=3.9e+02 Score=29.09 Aligned_cols=112 Identities=10% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCeEE-EEEc--CCCCEEEEEECCCeEEEEeCCCc-------eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEc
Q 001321 36 ATASI-LAFD--HIQRLLAIATLDGRIKVIGGDGI-------EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSL 105 (1100)
Q Consensus 36 ~~v~~-la~s--p~~~lLA~gs~dG~I~vw~~~~~-------~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~ 105 (1100)
..|.+ +.+. ....+|+.+|..|.++-..+... ...+.......+..+....+...|+.++.+|.+..++.
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGE 178 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEG
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEc
Confidence 34544 3443 24568999999999999875221 11122233556777777766678999999999888876
Q ss_pred CC---------CceeeeeecCCCeEEEEEec-----------------------------------CCCEEEEEeCCCcE
Q 001321 106 ES---------RSLACCLKWESNITAFSVIS-----------------------------------GSHFMYIGDENGLM 141 (1100)
Q Consensus 106 ~s---------~~~l~~~~~~~~Vt~~~~s~-----------------------------------~~~~l~~G~~dG~V 141 (1100)
.. |...-.+.....|.++...+ ...++++.+++|..
T Consensus 179 ~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~g 258 (370)
T 3l6v_A 179 STVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYG 258 (370)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEE
T ss_pred cccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCE
Confidence 32 11112223345666666554 34578888888877
Q ss_pred EEEEEe
Q 001321 142 SVIKYD 147 (1100)
Q Consensus 142 ~Iw~~d 147 (1100)
+...++
T Consensus 259 Krt~~~ 264 (370)
T 3l6v_A 259 KRTPLA 264 (370)
T ss_dssp EEEEGG
T ss_pred EEEEHH
Confidence 665544
No 374
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=37.71 E-value=4.4e+02 Score=28.86 Aligned_cols=308 Identities=10% Similarity=0.033 Sum_probs=142.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-e----------EEEeC--CCCCCEEEEEEEeCCCEEEEEECCC-cE
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGGDGI-E----------GLLIS--PSQLPYKNLEFLQNQGFLISITNDN-EI 100 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~----------~~~~~--~h~~~V~~l~fs~d~~~Lls~s~d~-~I 100 (1100)
+.+|..++.- ....+.-+.||.|+.|+.... + .-... -....|..++.. ..+.+....++ .|
T Consensus 15 ~~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v 90 (406)
T 4d9s_A 15 PRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEV 90 (406)
T ss_dssp CCCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEE
T ss_pred ccceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEE
Confidence 4466666655 345555677999999986321 1 01111 112245555543 34566666664 89
Q ss_pred EEEEcCCC-c--------eeee--e-ec-CCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCee-------eeeceee
Q 001321 101 QVWSLESR-S--------LACC--L-KW-ESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKL-------FQLPYNI 160 (1100)
Q Consensus 101 ~vWd~~s~-~--------~l~~--~-~~-~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l-------~~~~~~i 160 (1100)
..|-.... + ...- . .. ...|..++ ....+.++-..+|.|+.|-.... +++ ...|..+
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia--~G~~h~~alt~~G~v~~wG~n~~-GqLG~g~~~~~~~p~~v 167 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA--CGDSHCLAVTMEGEVQSWGRNQN-GQLGLGDTEDSLVPQKI 167 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTT-STTCSSSCCCEEEEEEC
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEE--EChhheEEEcCCCcEEEeCCCCC-ccCCCCCCCCcccceEe
Confidence 99964321 1 1111 1 11 12455544 45667777788999988875431 111 1111222
Q ss_pred cccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCcccc
Q 001321 161 SADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLE 240 (1100)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~ 240 (1100)
... ....|..|+- -..+.++-..+|.|..|-...... +++.+.... ..+ .
T Consensus 168 ~~~-----------~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~Gq---lG~g~~~~~-~~p-----------~ 217 (406)
T 4d9s_A 168 QAF-----------EGIRIKMVAA----GAEHTAAVTEDGDLYGWGWGRYGN---LGLGDRTDR-LVP-----------E 217 (406)
T ss_dssp GGG-----------TTCCEEEEEE----CSSEEEEEETTSCEEEEECCTTST---TCSSSSCCE-EEE-----------E
T ss_pred ccc-----------CCCcEEEEec----CCCeEEEEeCCCCEEEeeCCCCCC---CCCCCCCCc-Ccc-----------E
Confidence 211 1135777776 233467777899988886432100 000000000 000 0
Q ss_pred CCCCCCCCCCceEEEEEecCCCCEEEEEEcCCcEEEEecCCCCCCCCcccCCCCcceeeeccccCCCcceEEEEeccccc
Q 001321 241 GISEHQPEEKEISALCWASSSGSILAVGYIDGDILLWNTSTTASTKGQQTGSRNNVVKLELSSAERRLPVIVLHWSTNKE 320 (1100)
Q Consensus 241 ~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG~I~lWd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~w~~~~~ 320 (1100)
.+ .......|..++. ...+.+....||.|..|-.........- .. ................+..+.-.....
T Consensus 218 ~v--~~~~~~~i~~va~---G~~ht~~l~~~G~v~~wG~n~~GqlG~g-~~--~~~~~p~~v~~~~~~~v~~i~~G~~hs 289 (406)
T 4d9s_A 218 RV--TSTGGEKMSMVAC---GWRHTISVSYSGALYTYGWSKYGQLGHG-DL--EDHLIPHKLEALSNSFISQISGGWRHT 289 (406)
T ss_dssp EC--CCSTTCCEEEEEE---CSSEEEEEETTCCEEEEECCTTSTTCSS-SC--CCEEEEEECGGGTTSCEEEEEECSSEE
T ss_pred Ee--cccCCceEEEEEE---CCCcEEEEcCCCCEEEeeCCCCCCCCCC-CC--cCccccEEecccCCCCEEEEEecCCEE
Confidence 00 0011345666652 3456777789999999976543222110 00 000000000111122333332111122
Q ss_pred CCCCCCceEEEEeCCCCCCcceEEEEEcCCccccccceeeeeeeecCCCcceeEEEccCCCCCCCCCcceEEEEecCCee
Q 001321 321 SRSNIDGRLFVYGGDEIGSEEVLTVLSLEWSSGMENLRCVSRVDITLTGSFADMILLSSAGATVGNHKADLFVLTSPGQL 400 (1100)
Q Consensus 321 ~~~~~~~~llv~gg~~~g~~~~ltvl~l~~~~~~~~~~~~~~~~l~~~~~v~d~~~~p~~~~~~~~~~~~l~vl~~~G~l 400 (1100)
++...++.++..|....+..- +..... ......+.++....+.++..-. ...++++++|++
T Consensus 290 ~alt~~G~v~~wG~n~~GqLG------~g~~~~---~~~p~~v~~~~~~~v~~va~G~----------~hs~alt~~G~v 350 (406)
T 4d9s_A 290 MALTSDGKLYGWGWNKFGQVG------VGNNLD---QCSPVQVRFPDDQKVVQVSCGW----------RHTLAVTERNNV 350 (406)
T ss_dssp EEEETTSCEEEEECCTTSTTC------SSSSSC---EEEEEEECCGGGCCEEEEEECS----------SEEEEEETTSCE
T ss_pred EEEcCCCeEEEeeCCCCCCCC------CCCCCC---CccCEEEeccCCCcEEEEEeCC----------CeEEEEeCCCCE
Confidence 335667888888866543210 000000 0011112222333444444322 367888999999
Q ss_pred eEeecC
Q 001321 401 HFYDNA 406 (1100)
Q Consensus 401 ~~~d~~ 406 (1100)
+.|...
T Consensus 351 ~~wG~n 356 (406)
T 4d9s_A 351 FAWGRG 356 (406)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 999854
No 375
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=36.16 E-value=4.2e+02 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=15.7
Q ss_pred CCCEEEEEEcCC------EEEEEEccCCEEEE
Q 001321 189 SGNRVLIAYENA------LVILWDVSEAQIIF 214 (1100)
Q Consensus 189 ~g~~ll~~~~dg------~V~lwdl~~~~~~~ 214 (1100)
++..+++|+.++ .|.++++++++...
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 466677777543 45556888876554
No 376
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=34.78 E-value=4.6e+02 Score=28.21 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=25.6
Q ss_pred CCeEEEEeccCCCCCEEEEEEc-CCEEEEEEccCCEE
Q 001321 177 QPVVGVLPHPNSSGNRVLIAYE-NALVILWDVSEAQI 212 (1100)
Q Consensus 177 ~~V~sv~f~P~~~g~~ll~~~~-dg~V~lwdl~~~~~ 212 (1100)
...++|+|.| +|. ++++-. .|.|++++..+++.
T Consensus 32 ~~P~~ia~~p--dG~-llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 32 NSPWGLAPLP--GGD-LLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp SSEEEEEECT--TSC-EEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcC--CCc-EEEEEecCCEEEEEECCCCcE
Confidence 5688999977 787 777777 89988888665554
No 377
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=34.06 E-value=54 Score=29.30 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHhccch--hHHHHHHHHHHHhhcc
Q 001321 1048 SVAAHARDKLFERQDKLERISRCTEELQSGAE--DFASLANELVKTMENR 1095 (1100)
Q Consensus 1048 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1095 (1100)
..|..|+.+|.+-.+....|++|-++|+..++ -|..-=.+|+++|++-
T Consensus 34 a~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~ 83 (119)
T 3etw_A 34 AQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA 83 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999988765 4777777888887753
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.58 E-value=1.4e+02 Score=35.84 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=29.2
Q ss_pred EEEEEEEeCCCEEEEEECCCcEEEEEcCCCceeeeeec
Q 001321 79 YKNLEFLQNQGFLISITNDNEIQVWSLESRSLACCLKW 116 (1100)
Q Consensus 79 V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~~~l~~~~~ 116 (1100)
|.++. .+..+|++.+.|+++++||+.+++++.....
T Consensus 224 Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 55443 3468999999999999999999998877644
No 379
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=30.76 E-value=4.7e+02 Score=27.03 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCc-eEEEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEEcCCC-ceeeee
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGGDGI-EGLLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWSLESR-SLACCL 114 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~~~~-~~~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd~~s~-~~l~~~ 114 (1100)
.|..++...... +|. + ||.|+.|+.... ++-+...-...|..++...+ +.+..+ ++.|..|=.... ++-...
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 566677665443 444 5 899999987422 21111111236777766544 466666 999999976543 221111
Q ss_pred ecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEE
Q 001321 115 KWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVL 194 (1100)
Q Consensus 115 ~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll 194 (1100)
.....|..++... .+.++-. +|.|..|-.... +++. +|. .....|..|+- ..... ++
T Consensus 138 ~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~-gqlg-----~p~-----------~~~~~v~~i~~--G~~hs-~a 194 (282)
T 3qhy_B 138 EAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYF-GQTT-----VPA-----------EAQSGVDDVAG--GIFHS-LA 194 (282)
T ss_dssp GGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTT-STTS-----CCG-----------GGGSSEEEEEE--CSSEE-EE
T ss_pred cCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCC-CCCC-----Cce-----------ecCCCeEEEEe--cCCEE-EE
Confidence 2234566655433 3333333 788877765431 1221 111 11156777776 22332 33
Q ss_pred EEEcCCEEEEEEcc
Q 001321 195 IAYENALVILWDVS 208 (1100)
Q Consensus 195 ~~~~dg~V~lwdl~ 208 (1100)
. .+|.|..|-..
T Consensus 195 l--~~G~v~~wG~n 206 (282)
T 3qhy_B 195 L--KDGKVIAWGDN 206 (282)
T ss_dssp E--ETTEEEEEECC
T ss_pred E--ECCeEEEEECC
Confidence 3 68988888643
No 380
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=29.01 E-value=78 Score=26.85 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHH---HHhhcccccc
Q 001321 1048 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV---KTMENRKWWK 1099 (1100)
Q Consensus 1048 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1099 (1100)
......++-+++|.+|+=+=.||-++|.+-+++-+..|.+.. ++++.+-||+
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwk 66 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999876 5678888996
No 381
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.32 E-value=61 Score=22.86 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Q 001321 1047 SSVAAHARDKLFERQDKLERISRCT 1071 (1100)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~l~~~~~~~ 1071 (1100)
..+.++++.|+.|=+.||.+|++-+
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999998754
No 382
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=28.09 E-value=65 Score=20.29 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 001321 1048 SVAAHARDKLFERQDKLERI 1067 (1100)
Q Consensus 1048 ~~~~~~~~~~~~~~~~l~~~ 1067 (1100)
.+-++|-.+|+||-.+|+++
T Consensus 7 eay~~atRALHeRFDRLEr~ 26 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERM 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45577888999999999864
No 383
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=26.99 E-value=1e+02 Score=23.78 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhc
Q 001321 1048 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1094 (1100)
Q Consensus 1048 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1094 (1100)
..+...++-+.++.+|+=+=-+|-..|.+-+++.+..|....++.++
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999998877654
No 384
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=26.34 E-value=1.9e+02 Score=26.67 Aligned_cols=63 Identities=25% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHhccCCChh-HHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHH-HHhhc
Q 001321 1029 RLRTREEIIAKYRKAEDAS-SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELV-KTMEN 1094 (1100)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1094 (1100)
+.-++++|..|..-+-.-. +-=+.--.+|.|+.++-.+.-+++.|. ..+|+.||.|-+ .+|+.
T Consensus 41 k~~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~EvlqKa~Ee---n~~F~k~aeEkL~~KME~ 105 (143)
T 3ryc_E 41 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEE---NNNFIKMAKEKLAQKMES 105 (143)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3467899999843220000 000111233555555555555555443 568999998876 66664
No 385
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.71 E-value=1.1e+02 Score=27.15 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHhccch--hHHHHHHHHHHHhhc
Q 001321 1047 SSVAAHARDKLFERQDKLERISRCTEELQSGAE--DFASLANELVKTMEN 1094 (1100)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1094 (1100)
-..|..|...|.++.+.-.+|++|-++++..++ -|..-=++|+++|++
T Consensus 33 ka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~ 82 (119)
T 2avr_X 33 RAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 367888999999998888888888888877654 367777777777765
No 386
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=24.62 E-value=1.2e+02 Score=23.57 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhc
Q 001321 1048 SVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMEN 1094 (1100)
Q Consensus 1048 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1094 (1100)
..+...++-+.++.+|+=+=-+|-.+|.+-+++.+..|....+..++
T Consensus 11 ~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~ 57 (63)
T 1n7s_A 11 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999877654
No 387
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.13 E-value=6e+02 Score=26.15 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=114.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeC---CCceE-EEeCCCCCCEEEEEEEe--CCCEEEEEECCCcEEEEEcCCC
Q 001321 35 PATASILAFDHIQRLLAIATLDGRIKVIGG---DGIEG-LLISPSQLPYKNLEFLQ--NQGFLISITNDNEIQVWSLESR 108 (1100)
Q Consensus 35 ~~~v~~la~sp~~~lLA~gs~dG~I~vw~~---~~~~~-~~~~~h~~~V~~l~fs~--d~~~Lls~s~d~~I~vWd~~s~ 108 (1100)
...+..+.-......|..-|.+|+++--.. +.... -+ ......|..+.- + +..+++.++.+|.++-..+..-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345555555555667777888998876442 21111 12 444566777744 4 4679999999999999987542
Q ss_pred ------ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc--ccccCCCCCCCCCeE
Q 001321 109 ------SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL--SEKAGFPLLSHQPVV 180 (1100)
Q Consensus 109 ------~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~--~~~~~~~~~~~~~V~ 180 (1100)
.....+.....+..+......+.++..+.+|.+ +.++.. .+|...+ ....+..-...+.|.
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~--~r~~~~---------eip~~gR~a~Gv~~i~L~~~d~vv 169 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRV--ARFSVR---------EVPPSTPGARGVQGIKLEKNDETS 169 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEE--EEEEGG---------GSCBCCTTCCCEECCCCCTTCCEE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEE--EEEEhh---------hCCCcCCCCCCEEEEccCCCCEEE
Confidence 222223334556666555567788899999965 333321 1221100 000011111225677
Q ss_pred EEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecC
Q 001321 181 GVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASS 260 (1100)
Q Consensus 181 sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~sp 260 (1100)
++...+ ++..++..+..|.++...+..-..... ++.| .... .+...+..+.-. .
T Consensus 170 ~~~~~~--~~~~ll~~T~~G~~kr~~~~e~~~~~R--------------------~gkG-v~~i--~~~~~lv~~~~~-~ 223 (276)
T 3no0_A 170 GLRIWN--GEPYLLVITAKGRVKKISHEEIPKTNR--------------------GVKG-TEVS--GTKDTLVDLIPI-K 223 (276)
T ss_dssp EEEEES--SCSEEEEEETTSCEEEEEGGGSCCCCT--------------------TCCC-EECC--CSSSCEEEEEEE-S
T ss_pred EEEEeC--CCCEEEEEeCCCcEEEeEHHHcccCCC--------------------CCcc-eEEE--cCCCcEEEEEEe-C
Confidence 665533 344689999999887777654321100 0000 0000 113445544323 3
Q ss_pred CCCEEEEEEcCCcEEE--EecC
Q 001321 261 SGSILAVGYIDGDILL--WNTS 280 (1100)
Q Consensus 261 dg~~l~sg~~DG~I~l--Wd~~ 280 (1100)
+...++..+.+|.+.. ++..
T Consensus 224 ~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 224 EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCEEEEEcCCCeEEEeeeCHH
Confidence 4456778888888877 7764
No 388
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=23.78 E-value=6.7e+02 Score=26.58 Aligned_cols=211 Identities=12% Similarity=0.091 Sum_probs=114.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeC---CCc------eE---EEeCCCCCCEEEEEEEe---CCCEEEEEECCCcEE
Q 001321 37 TASILAFDHIQRLLAIATLDGRIKVIGG---DGI------EG---LLISPSQLPYKNLEFLQ---NQGFLISITNDNEIQ 101 (1100)
Q Consensus 37 ~v~~la~sp~~~lLA~gs~dG~I~vw~~---~~~------~~---~~~~~h~~~V~~l~fs~---d~~~Lls~s~d~~I~ 101 (1100)
.+..+........|..-|..|+++-... +.. .. ++.......|..+...+ +..+++.++.+|.|+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 4455555556667777888888776643 211 11 12233445677766554 468999999999999
Q ss_pred EEEcCCC-------ceeeeeecCCCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeeccccc--ccccCCC
Q 001321 102 VWSLESR-------SLACCLKWESNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADAL--SEKAGFP 172 (1100)
Q Consensus 102 vWd~~s~-------~~l~~~~~~~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~--~~~~~~~ 172 (1100)
--.+..- .....+.....+..+......+.++..+.+|.+ +.+...+.. +|.... .......
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~--~rf~~~~~e-------ip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQS--IRFSATDEA-------LRPMGRATSGVQGMR 193 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEE--EEEECCTTT-------SCCCCTTSBCEESSC
T ss_pred EeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeE--EEEECcccc-------cCcCCcCCCCeeeec
Confidence 9886441 122223334555555555566788888999955 444432001 111000 0011111
Q ss_pred CCCCCCeEEEEeccCCCCCEEEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCC-CCCCc
Q 001321 173 LLSHQPVVGVLPHPNSSGNRVLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQ-PEEKE 251 (1100)
Q Consensus 173 ~~~~~~V~sv~f~P~~~g~~ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~-~~~~~ 251 (1100)
-.....|.++..-+ ++..++.++..|.++.-.+..-..... + ..| ....+. .+...
T Consensus 194 L~~~d~Vv~~~~~~--~~~~ll~~T~~G~~Krt~l~e~~~~~R-~-------------------~~G-~~~~~l~~~~d~ 250 (327)
T 3uc1_A 194 FNIDDRLLSLNVVR--EGTYLLVATSGGYAKRTAIEEYPVQGR-G-------------------GKG-VLTVMYDRRRGR 250 (327)
T ss_dssp CCTTCCEEEEEECC--TTCEEEEEETTSEEEEEEGGGSCBCCT-T-------------------SCC-EESSCCCTTTCS
T ss_pred CCCCCEEEEEEEEC--CCCEEEEEeCCCcEEEEEHHHccccCc-C-------------------CCc-EEEEEecCCCCe
Confidence 22235677777643 445699999999887776654322110 0 000 000011 11334
Q ss_pred eEEEEEecCCCCEEEEEEcCCcEEEEecC
Q 001321 252 ISALCWASSSGSILAVGYIDGDILLWNTS 280 (1100)
Q Consensus 252 V~sl~w~spdg~~l~sg~~DG~I~lWd~~ 280 (1100)
+..+... .+...++..+.+|.+.-++..
T Consensus 251 lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 251 LVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 5554433 455667778888888777764
No 389
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=22.77 E-value=7.3e+02 Score=27.79 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=30.1
Q ss_pred cccCCCCc--EEEEEecCCcEEEeeCCCCce-eEEeeeccceeeeeecCCCCCeeEEEEeeC
Q 001321 489 TKCHSVDR--VYLAGYHDGSVRIWDATYPVF-KLICALDAEVQGIEVAGSRAPVSTLSFCFI 547 (1100)
Q Consensus 489 ~~~s~~~~--~l~Tg~~DGtIriWd~~~~~l-~~~~~l~~~~~~~~l~~h~~~Vt~lafspd 547 (1100)
+++.|++. +|++ ...|.|++++...... ..+..+...+..-...........|+|+|+
T Consensus 19 ~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 19 ALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred EEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 36788885 6665 5689999997543211 111111100000000012346788999996
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.68 E-value=6.2e+02 Score=25.74 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=82.3
Q ss_pred EEEEEECCCeEEEEeCCCceE-EEeCCCCCCEEEEEEEeCCCEEEEEECCCcEEEEE---cCC----Cceee---eeecC
Q 001321 49 LLAIATLDGRIKVIGGDGIEG-LLISPSQLPYKNLEFLQNQGFLISITNDNEIQVWS---LES----RSLAC---CLKWE 117 (1100)
Q Consensus 49 lLA~gs~dG~I~vw~~~~~~~-~~~~~h~~~V~~l~fs~d~~~Lls~s~d~~I~vWd---~~s----~~~l~---~~~~~ 117 (1100)
.+++.|.+|.|+--....... .+...-...+..+........|+..++.|.+.-.. +.. |+.+. .+...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~ 83 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 83 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCC
Confidence 466788999998766543221 11122334566666666667788888888865544 422 22111 12334
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEEEecCCCeeeeeceeecccccccccCCCCCCCCCeEEEEeccCCCCCEEEEEE
Q 001321 118 SNITAFSVISGSHFMYIGDENGLMSVIKYDADEGKLFQLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNRVLIAY 197 (1100)
Q Consensus 118 ~~Vt~~~~s~~~~~l~~G~~dG~V~Iw~~d~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ll~~~ 197 (1100)
..|.++....+..+++..+.+|.++...++.-. .....-.....+. ..+.+..+..-+ +....+++.+
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~---------~~~r~G~~~i~L~--~~d~lv~~~~~~-~~~~~i~l~T 151 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV---------ARNRAGKALITLP--ENAHVMPPVVIE-DASDMLLAIT 151 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGC---------CCSTTCEECBCCC--TTCCBCCCEECC-CTTCEEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhc---------ccCcCceEEEEEC--CCCEEEEEEEec-CCCCEEEEEc
Confidence 567777554456778899999988776654210 0000000001111 113454444421 2344599999
Q ss_pred cCCEEEEEEccC
Q 001321 198 ENALVILWDVSE 209 (1100)
Q Consensus 198 ~dg~V~lwdl~~ 209 (1100)
.+|.+..+++.+
T Consensus 152 ~~G~~lrf~~~e 163 (256)
T 1zvt_A 152 QAGRMLMFPVSD 163 (256)
T ss_dssp TTSEEEEEEGGG
T ss_pred CCCeEEEEEHHH
Confidence 999988888765
No 391
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.75 E-value=1.9e+02 Score=22.63 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHhccchhHHHHHHHHHHHhhcc
Q 001321 1047 SSVAAHARDKLFERQDKLERISRCTEELQSGAEDFASLANELVKTMENR 1095 (1100)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1095 (1100)
-..+...++-+.++.+|+=+=-+|-..|.+-+++.+..|....++.++-
T Consensus 15 q~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l 63 (65)
T 1gl2_A 15 QSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999999999999999999999998887653
No 392
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=20.02 E-value=9.3e+02 Score=26.80 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEEe-cCCCeee---------eeceeecccccccccCCCCCCCCCeEEEEeccCCCCCE
Q 001321 123 FSVISGSHFMYIGDENGLMSVIKYD-ADEGKLF---------QLPYNISADALSEKAGFPLLSHQPVVGVLPHPNSSGNR 192 (1100)
Q Consensus 123 ~~~s~~~~~l~~G~~dG~V~Iw~~d-~~~~~l~---------~~~~~i~~~~~~~~~~~~~~~~~~V~sv~f~P~~~g~~ 192 (1100)
+.+.....+.++-..+|.|+.|-.. ...+.+- ..|..++.. ....|..|+. -..+
T Consensus 151 ~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l-----------~~~~i~~va~----G~~h 215 (473)
T 3of7_A 151 VQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTF-----------SKYNIVQLAP----GKDH 215 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCC-----------CSSCEEEEEE----CSSE
T ss_pred EEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEcccc-----------CCCCEEEEEe----cCCe
Confidence 3344456666777889999888752 1122221 112222211 1135888877 2334
Q ss_pred EEEEEcCCEEEEEEccCCEEEEEecCCcccccccccCCCCCCCCccccCCCCCCCCCCceEEEEEecCCCCEEEEEEcCC
Q 001321 193 VLIAYENALVILWDVSEAQIIFVGGGKDLQLKDGVVDSPSEGDSTFLEGISEHQPEEKEISALCWASSSGSILAVGYIDG 272 (1100)
Q Consensus 193 ll~~~~dg~V~lwdl~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~g~~~~~~~~~~~~V~sl~w~spdg~~l~sg~~DG 272 (1100)
.++-..+|.|..|-....-. .++...... .. ..+.+.......|..++. ...+.+....+|
T Consensus 216 s~alt~~G~v~~wG~n~~Gq---LG~~~~~~~-~~------------~~~~p~~~~~~~v~~Ia~---G~~hs~alt~~G 276 (473)
T 3of7_A 216 ILFLDEEGMVFAWGNGQQNQ---LGRKVMERF-RL------------KTLDPRPFGLRHVKYIAS---GENHCFALTKDN 276 (473)
T ss_dssp EEEEETTSCEEEEECCTTST---TSSCCCGGG-TT------------TTCSCEECSCCSEEEEEE---CSSEEEEEETTS
T ss_pred EEEEeCCCeEEEEeCCCCCC---CCCCccccc-cc------------cccCceecCCcceEEEec---CCCeEEEEecCC
Confidence 67778899888886543110 011000000 00 000000001245666662 356777778899
Q ss_pred cEEEEecCC
Q 001321 273 DILLWNTST 281 (1100)
Q Consensus 273 ~I~lWd~~~ 281 (1100)
.|..|-...
T Consensus 277 ~v~~wG~n~ 285 (473)
T 3of7_A 277 KLVSWGLNQ 285 (473)
T ss_dssp CEEEEEECT
T ss_pred CEEEeCCCC
Confidence 999997654
Done!