BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001322
(1100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 635 DIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIEPV-VTDMPMKGFVDDRD 693
++ ++L Q VL+ + G+ GL K+ +F K + P + +K FV DR
Sbjct: 443 EVEMVLVQHDAVLEAAVVGVDHGGL----VKTRAFVVLKREFAPSEILAEELKAFVKDRL 498
Query: 694 SPHHHLKTSLDVMTLPGTKSSDIEWWETQER 724
+PH + + + V LP T + I+ ++ +E+
Sbjct: 499 APHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+ And
Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+ And
Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 988 TYKDIWVATARMNTTIYQDVFSCVPNDLIHTRAAIRQNIAFWKEKL 1033
T KD VAT +++ T+ +DV++ +P + + N+ WKE L
Sbjct: 350 TAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEAL 395
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 988 TYKDIWVATARMNTTIYQDVFSCVPNDLIHTRAAIRQNIAFWKEKL 1033
T KD VAT +++ T+ +DV++ +P + + N+ WKE L
Sbjct: 348 TAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEAL 393
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In Yeast
Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In Yeast
Transketolase
Length = 680
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 988 TYKDIWVATARMNTTIYQDVFSCVPNDLIHTRAAIRQNIAFWKEKL 1033
T KD VAT +++ T+ +DV++ +P + + N+ WKE L
Sbjct: 350 TAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEAL 395
>pdb|4GGJ|A Chain A, Crystal Structure Of Zucchini From Mouse (Mzuc PLD6
MITOPLD)
pdb|4GGK|A Chain A, Crystal Structure Of Zucchini From Mouse (Mzuc PLD6
MITOPLD) BOUND To Tungstate
Length = 196
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 900 YVHSKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLIEDKESVDSFM 947
Y+H K I+D + + GS N +++ +R++ + ++ED E V F+
Sbjct: 122 YMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVL--IMEDTEYVRLFL 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,255,692
Number of Sequences: 62578
Number of extensions: 1474042
Number of successful extensions: 2948
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2945
Number of HSP's gapped (non-prelim): 6
length of query: 1100
length of database: 14,973,337
effective HSP length: 109
effective length of query: 991
effective length of database: 8,152,335
effective search space: 8078963985
effective search space used: 8078963985
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)