Query 001322
Match_columns 1100
No_of_seqs 568 out of 2581
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 21:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02866 phospholipase D 100.0 3E-258 6E-263 2303.4 96.8 1064 33-1100 2-1068(1068)
2 KOG1329 Phospholipase D1 [Lipi 100.0 6E-172 1E-176 1520.4 52.2 853 21-1100 21-887 (887)
3 PLN02352 phospholipase D epsil 100.0 2.1E-99 4E-104 906.0 49.0 512 315-1004 125-701 (758)
4 PLN03008 Phospholipase D delta 100.0 5.7E-93 1.2E-97 850.3 50.3 545 315-1004 172-813 (868)
5 PLN02270 phospholipase D alpha 100.0 4.2E-86 9.1E-91 792.3 48.2 513 315-1004 143-752 (808)
6 PRK12452 cardiolipin synthetas 100.0 1.3E-47 2.9E-52 456.6 36.8 325 361-942 138-465 (509)
7 PRK01642 cls cardiolipin synth 100.0 7.8E-47 1.7E-51 448.8 37.0 320 361-942 114-439 (483)
8 PRK11263 cardiolipin synthase 100.0 8.9E-45 1.9E-49 421.7 35.2 318 360-941 5-326 (411)
9 COG1502 Cls Phosphatidylserine 100.0 7.5E-37 1.6E-41 358.6 34.9 331 361-941 58-393 (438)
10 PRK09428 pssA phosphatidylseri 100.0 3.7E-33 7.9E-38 327.1 34.8 356 361-941 23-394 (451)
11 PHA02820 phospholipase-D-like 100.0 5E-32 1.1E-36 316.4 32.2 329 373-941 26-361 (424)
12 PHA03003 palmytilated EEV memb 100.0 5.8E-32 1.3E-36 311.6 27.2 138 373-576 31-171 (369)
13 cd07297 PX_PLD2 The phosphoino 99.9 1.3E-26 2.9E-31 222.9 11.0 128 43-200 2-130 (130)
14 cd01254 PH_PLD Phospholipase D 99.9 4.1E-22 8.9E-27 195.7 12.4 121 213-335 1-121 (121)
15 cd07296 PX_PLD1 The phosphoino 99.9 7.1E-22 1.5E-26 194.6 10.8 129 43-200 2-135 (135)
16 cd06895 PX_PLD The phosphoinos 99.9 1.9E-21 4.2E-26 194.8 12.2 138 42-200 2-140 (140)
17 PRK05443 polyphosphate kinase; 99.8 6.3E-17 1.4E-21 198.2 24.2 138 368-574 343-494 (691)
18 TIGR03705 poly_P_kin polyphosp 99.7 2.3E-16 5E-21 192.3 22.4 136 368-573 334-484 (672)
19 cd00138 PLDc Phospholipase D. 99.6 1.1E-14 2.3E-19 150.4 14.9 157 362-575 10-169 (176)
20 PHA02820 phospholipase-D-like 99.5 1.7E-13 3.6E-18 161.2 16.2 148 741-940 4-151 (424)
21 cd00138 PLDc Phospholipase D. 99.5 1.1E-13 2.3E-18 143.0 11.9 149 745-941 2-152 (176)
22 KOG3603 Predicted phospholipas 99.4 2.9E-11 6.2E-16 137.5 25.6 115 373-496 72-190 (456)
23 PRK12452 cardiolipin synthetas 99.4 3.6E-12 7.7E-17 153.4 13.6 146 362-575 328-480 (509)
24 PRK13912 nuclease NucT; Provis 99.3 3E-11 6.6E-16 126.5 16.5 142 370-575 30-174 (177)
25 PRK13912 nuclease NucT; Provis 99.3 1.6E-11 3.5E-16 128.6 13.5 130 762-943 31-160 (177)
26 PHA03003 palmytilated EEV memb 99.3 1.4E-11 3E-16 143.0 14.0 142 375-575 218-363 (369)
27 cd06875 PX_IRAS The phosphoino 99.2 6.7E-11 1.5E-15 115.7 10.0 105 45-205 5-110 (116)
28 PF13091 PLDc_2: PLD-like doma 99.1 1.7E-10 3.7E-15 112.5 9.8 114 770-943 2-115 (126)
29 PF13091 PLDc_2: PLD-like doma 99.1 1.9E-09 4.1E-14 105.2 13.5 123 378-572 1-126 (126)
30 PRK01642 cls cardiolipin synth 99.1 1E-09 2.2E-14 131.8 13.9 145 362-575 302-454 (483)
31 cd06878 PX_SNX25 The phosphoin 99.0 6E-10 1.3E-14 110.7 8.6 105 45-200 10-127 (127)
32 cd06872 PX_SNX19_like_plant Th 99.0 9.8E-10 2.1E-14 106.1 9.0 101 45-198 2-105 (107)
33 KOG1259 Nischarin, modulator o 99.0 4.9E-10 1.1E-14 122.5 7.4 94 61-204 25-119 (490)
34 PRK11263 cardiolipin synthase 99.0 3.5E-09 7.5E-14 124.6 14.2 135 763-941 17-154 (411)
35 PF00787 PX: PX domain; Inter 98.9 2.6E-09 5.7E-14 101.9 9.1 105 45-200 5-113 (113)
36 cd06880 PX_SNX22 The phosphoin 98.9 6.4E-09 1.4E-13 100.9 11.6 106 45-205 2-107 (110)
37 cd06871 PX_MONaKA The phosphoi 98.9 3.5E-09 7.6E-14 104.3 9.0 90 63-204 21-114 (120)
38 cd06877 PX_SNX14 The phosphoin 98.9 4.9E-09 1.1E-13 103.1 9.1 108 43-199 2-118 (119)
39 cd06870 PX_CISK The phosphoino 98.9 5.5E-09 1.2E-13 101.2 9.2 106 43-200 2-109 (109)
40 PRK09428 pssA phosphatidylseri 98.8 1.8E-08 3.9E-13 119.7 13.4 140 764-943 35-180 (451)
41 cd06897 PX_SNARE The phosphoin 98.8 1.3E-08 2.8E-13 98.2 9.5 101 45-199 2-107 (108)
42 cd06882 PX_p40phox The phospho 98.8 3.4E-08 7.4E-13 97.8 11.7 114 45-202 5-120 (123)
43 cd07276 PX_SNX16 The phosphoin 98.8 1.9E-08 4.1E-13 97.6 9.0 103 45-200 5-110 (110)
44 PF00614 PLDc: Phospholipase D 98.8 1.5E-09 3.2E-14 79.7 0.6 27 473-499 2-28 (28)
45 cd06883 PX_PI3K_C2 The phospho 98.7 6.7E-08 1.5E-12 93.7 10.3 102 46-199 2-108 (109)
46 cd06876 PX_MDM1p The phosphoin 98.7 8.3E-08 1.8E-12 96.3 10.8 104 44-197 20-131 (133)
47 PRK05443 polyphosphate kinase; 98.7 7.3E-08 1.6E-12 119.3 10.9 119 767-944 351-482 (691)
48 cd06890 PX_Bem1p The phosphoin 98.6 2E-07 4.3E-12 90.9 11.3 107 45-199 2-111 (112)
49 cd06873 PX_SNX13 The phosphoin 98.6 1.3E-07 2.7E-12 93.4 10.0 104 45-199 6-119 (120)
50 cd01251 PH_centaurin_alpha Cen 98.6 2.7E-07 5.8E-12 88.6 11.3 87 245-336 14-100 (103)
51 smart00312 PX PhoX homologous 98.6 1.2E-07 2.7E-12 90.0 8.1 87 63-198 12-105 (105)
52 cd07279 PX_SNX20_21_like The p 98.6 1.3E-07 2.8E-12 92.1 8.1 104 46-199 3-111 (112)
53 cd07280 PX_YPT35 The phosphoin 98.6 2.8E-07 6.1E-12 90.9 10.2 108 45-198 4-119 (120)
54 cd06884 PX_PI3K_C2_68D The pho 98.6 3.8E-07 8.3E-12 88.7 10.7 102 45-198 3-109 (111)
55 cd06881 PX_SNX15_like The phos 98.6 2.6E-07 5.5E-12 90.8 9.4 104 45-198 4-115 (117)
56 cd06887 PX_p47phox The phospho 98.6 7.1E-07 1.5E-11 87.7 12.4 113 45-201 3-117 (118)
57 cd07300 PX_SNX20 The phosphoin 98.6 2.1E-07 4.6E-12 90.9 8.7 90 63-200 18-112 (114)
58 cd06886 PX_SNX27 The phosphoin 98.6 2.9E-07 6.3E-12 88.9 9.3 100 45-198 5-104 (106)
59 cd06874 PX_KIF16B_SNX23 The ph 98.5 3.1E-07 6.6E-12 91.5 9.1 49 45-95 2-50 (127)
60 cd06869 PX_UP2_fungi The phosp 98.5 5.3E-07 1.1E-11 88.8 10.6 83 62-198 32-117 (119)
61 cd06888 PX_FISH The phosphoino 98.5 9.3E-07 2E-11 87.0 11.7 112 45-199 3-118 (119)
62 cd07277 PX_RUN The phosphoinos 98.5 2.9E-07 6.3E-12 90.5 8.1 49 45-95 2-50 (118)
63 cd06867 PX_SNX41_42 The phosph 98.5 4E-07 8.7E-12 88.7 8.9 107 46-199 2-111 (112)
64 cd07301 PX_SNX21 The phosphoin 98.5 2.9E-07 6.2E-12 89.8 7.8 91 61-199 16-111 (112)
65 cd06093 PX_domain The Phox Hom 98.5 1E-06 2.2E-11 83.1 10.6 102 46-198 2-105 (106)
66 cd06865 PX_SNX_like The phosph 98.5 6.5E-07 1.4E-11 88.3 9.3 90 61-199 21-119 (120)
67 COG1502 Cls Phosphatidylserine 98.5 9.9E-07 2.2E-11 104.4 12.5 145 365-576 253-410 (438)
68 cd07289 PX_PI3K_C2_alpha The p 98.4 1.4E-06 3E-11 84.3 10.6 99 46-198 2-107 (109)
69 cd06861 PX_Vps5p The phosphoin 98.4 1E-06 2.2E-11 85.8 9.6 103 46-199 3-111 (112)
70 cd01233 Unc104 Unc-104 pleckst 98.4 1.8E-06 3.9E-11 82.3 10.8 95 212-335 3-97 (100)
71 cd07282 PX_SNX2 The phosphoino 98.4 1.2E-06 2.6E-11 86.9 9.8 116 46-200 3-124 (124)
72 cd06859 PX_SNX1_2_like The pho 98.4 1.2E-06 2.6E-11 85.3 9.3 102 46-198 3-112 (114)
73 cd06862 PX_SNX9_18_like The ph 98.4 1.5E-06 3.2E-11 86.5 9.9 106 45-201 2-108 (125)
74 cd01238 PH_Tec Tec pleckstrin 98.4 2E-06 4.4E-11 82.9 10.4 99 213-334 2-105 (106)
75 cd06864 PX_SNX4 The phosphoino 98.4 1.4E-06 3E-11 87.1 9.1 112 45-198 2-127 (129)
76 cd06879 PX_UP1_plant The phosp 98.3 1.2E-06 2.7E-11 87.7 8.2 88 63-199 44-137 (138)
77 smart00155 PLDc Phospholipase 98.3 3.8E-07 8.3E-12 67.1 3.4 26 899-924 3-28 (28)
78 cd06898 PX_SNX10 The phosphoin 98.3 2.2E-06 4.8E-11 83.8 9.6 90 61-199 16-112 (113)
79 cd06868 PX_HS1BP3 The phosphoi 98.3 1.8E-06 4E-11 85.2 9.1 89 61-199 18-119 (120)
80 cd07281 PX_SNX1 The phosphoino 98.3 1.8E-06 3.9E-11 85.7 8.6 112 46-199 3-123 (124)
81 cd07287 PX_RPK118_like The pho 98.3 2.3E-06 5E-11 84.2 8.8 92 63-198 17-116 (118)
82 cd01260 PH_CNK Connector enhan 98.3 5.8E-06 1.2E-10 77.9 11.0 94 213-335 2-96 (96)
83 cd06893 PX_SNX19 The phosphoin 98.3 2.3E-06 4.9E-11 85.9 8.5 96 61-199 19-131 (132)
84 cd06885 PX_SNX17_31 The phosph 98.3 2.7E-06 5.9E-11 81.9 8.6 86 62-199 17-102 (104)
85 KOG3603 Predicted phospholipas 98.3 6E-06 1.3E-10 95.0 12.6 152 373-576 276-440 (456)
86 cd06863 PX_Atg24p The phosphoi 98.2 5.6E-06 1.2E-10 81.4 9.9 109 46-200 3-118 (118)
87 cd06866 PX_SNX8_Mvp1p_like The 98.2 6.6E-06 1.4E-10 79.4 9.6 87 62-199 17-104 (105)
88 cd07288 PX_SNX15 The phosphoin 98.2 5.2E-06 1.1E-10 81.8 8.9 92 63-198 17-116 (118)
89 cd06894 PX_SNX3_like The phosp 98.2 6.6E-06 1.4E-10 81.6 8.6 99 61-200 17-121 (123)
90 cd07295 PX_Grd19 The phosphoin 98.2 8.9E-06 1.9E-10 79.9 9.4 91 61-200 17-114 (116)
91 cd01236 PH_outspread Outspread 98.2 1.3E-05 2.7E-10 77.4 10.2 79 245-334 22-102 (104)
92 cd07293 PX_SNX3 The phosphoino 98.2 7.2E-06 1.6E-10 81.4 8.8 98 61-199 17-120 (123)
93 cd01265 PH_PARIS-1 PARIS-1 ple 98.1 1.4E-05 3E-10 75.6 10.0 77 245-335 15-93 (95)
94 cd07294 PX_SNX12 The phosphoin 98.1 1.1E-05 2.4E-10 81.0 9.2 101 62-203 20-126 (132)
95 PF00169 PH: PH domain; Inter 98.1 2.6E-05 5.6E-10 72.0 10.8 94 213-335 3-102 (104)
96 cd07285 PX_SNX9 The phosphoino 98.1 1E-05 2.2E-10 80.4 8.3 92 61-202 18-110 (126)
97 cd06889 PX_NoxO1 The phosphoin 98.1 4.4E-05 9.5E-10 75.3 12.2 109 45-199 7-120 (121)
98 cd07286 PX_SNX18 The phosphoin 98.1 1.4E-05 3.1E-10 79.5 8.8 89 61-200 18-107 (127)
99 cd07290 PX_PI3K_C2_beta The ph 98.1 1.8E-05 4E-10 76.7 9.1 87 63-198 16-107 (109)
100 cd06860 PX_SNX7_30_like The ph 98.1 1.6E-05 3.6E-10 78.0 8.9 89 61-198 16-114 (116)
101 cd01264 PH_melted Melted pleck 98.0 2.9E-05 6.3E-10 74.4 10.2 83 245-335 17-100 (101)
102 cd01246 PH_oxysterol_bp Oxyste 98.0 5E-05 1.1E-09 69.8 10.6 75 245-334 13-90 (91)
103 cd01247 PH_GPBP Goodpasture an 98.0 5.5E-05 1.2E-09 71.2 10.9 75 245-334 13-90 (91)
104 PF00614 PLDc: Phospholipase D 98.0 2.9E-06 6.2E-11 62.5 1.7 26 899-924 3-28 (28)
105 cd01250 PH_centaurin Centaurin 98.0 5.2E-05 1.1E-09 70.1 10.4 91 213-334 1-93 (94)
106 cd01257 PH_IRS Insulin recepto 98.0 5.1E-05 1.1E-09 72.8 10.0 77 246-334 13-100 (101)
107 cd01252 PH_cytohesin Cytohesin 97.9 9.4E-05 2E-09 73.3 11.3 91 213-336 2-113 (125)
108 cd01235 PH_SETbf Set binding f 97.9 0.0001 2.2E-09 69.7 10.5 86 245-335 13-100 (101)
109 cd01266 PH_Gab Gab (Grb2-assoc 97.8 9.6E-05 2.1E-09 71.5 10.0 83 245-334 17-106 (108)
110 cd07283 PX_SNX30 The phosphoin 97.8 9.2E-05 2E-09 72.8 9.1 89 62-198 17-114 (116)
111 cd01244 PH_RasGAP_CG9209 RAS_G 97.7 0.00031 6.8E-09 67.1 10.6 78 245-334 19-97 (98)
112 PF15413 PH_11: Pleckstrin hom 97.5 0.00076 1.7E-08 65.9 11.0 90 245-335 14-112 (112)
113 cd07284 PX_SNX7 The phosphoino 97.5 0.00029 6.2E-09 69.4 8.0 90 61-198 16-114 (116)
114 smart00233 PH Pleckstrin homol 97.5 0.0013 2.8E-08 59.4 11.0 81 245-335 16-100 (102)
115 KOG3964 Phosphatidylglycerolph 97.4 0.0099 2.1E-07 68.4 19.7 123 361-496 27-166 (469)
116 smart00155 PLDc Phospholipase 97.4 0.00015 3.3E-09 53.4 3.0 23 474-496 3-25 (28)
117 PF15409 PH_8: Pleckstrin homo 97.3 0.0014 3.1E-08 61.5 9.6 75 245-335 12-88 (89)
118 cd01241 PH_Akt Akt pleckstrin 97.3 0.0015 3.3E-08 62.6 9.8 94 212-335 2-101 (102)
119 TIGR03705 poly_P_kin polyphosp 97.3 0.0014 3E-08 81.7 11.5 119 767-943 342-472 (672)
120 PLN02866 phospholipase D 97.2 0.0017 3.7E-08 82.8 11.3 118 764-920 344-466 (1068)
121 PF13918 PLDc_3: PLD-like doma 97.1 0.0027 5.8E-08 66.7 10.3 63 762-829 80-144 (177)
122 PF07894 DUF1669: Protein of u 97.0 0.0045 9.8E-08 69.3 11.1 138 373-572 134-278 (284)
123 cd01237 Unc112 Unc-112 pleckst 96.9 0.0043 9.4E-08 59.9 8.9 82 245-336 18-103 (106)
124 cd06896 PX_PI3K_C2_gamma The p 96.9 0.0064 1.4E-07 57.7 9.4 96 46-198 2-99 (101)
125 cd00821 PH Pleckstrin homology 96.8 0.0094 2E-07 53.3 9.4 78 245-334 14-95 (96)
126 cd01263 PH_anillin Anillin Ple 96.7 0.01 2.2E-07 59.0 10.0 82 245-334 17-121 (122)
127 cd01245 PH_RasGAP_CG5898 RAS G 96.7 0.0084 1.8E-07 57.4 8.7 78 245-334 14-97 (98)
128 PF11495 Regulator_TrmB: Archa 96.6 0.02 4.4E-07 62.9 12.5 96 369-496 6-101 (233)
129 cd01253 PH_beta_spectrin Beta- 96.6 0.015 3.2E-07 55.6 9.7 80 245-334 21-103 (104)
130 cd01230 PH_EFA6 EFA6 Pleckstri 96.5 0.024 5.2E-07 56.1 10.8 103 212-336 1-111 (117)
131 cd01219 PH_FGD FGD (faciogenit 96.5 0.02 4.3E-07 54.9 9.9 81 245-336 16-99 (101)
132 cd00900 PH-like Pleckstrin hom 96.4 0.019 4.2E-07 51.6 9.0 78 245-334 17-98 (99)
133 PF13918 PLDc_3: PLD-like doma 96.2 0.011 2.4E-07 62.1 6.8 57 374-432 83-140 (177)
134 KOG0930 Guanine nucleotide exc 96.1 0.025 5.5E-07 62.3 9.5 93 245-338 275-377 (395)
135 cd06891 PX_Vps17p The phosphoi 95.9 0.03 6.5E-07 56.9 8.3 101 45-199 31-139 (140)
136 PF14593 PH_3: PH domain; PDB: 95.6 0.076 1.6E-06 51.5 9.5 85 211-335 13-98 (104)
137 PLN02352 phospholipase D epsil 95.3 0.043 9.3E-07 68.9 8.3 58 372-435 452-522 (758)
138 PLN03008 Phospholipase D delta 94.9 0.11 2.3E-06 65.8 10.0 58 373-436 567-637 (868)
139 KOG2527 Sorting nexin SNX11 [I 94.4 0.063 1.4E-06 53.5 5.1 93 60-202 32-132 (144)
140 cd07299 PX_TCGAP The phosphoin 94.2 0.25 5.3E-06 47.7 8.5 32 63-95 25-57 (113)
141 cd01220 PH_CDEP Chondrocyte-de 94.2 0.45 9.8E-06 45.7 10.5 35 302-336 63-97 (99)
142 cd01256 PH_dynamin Dynamin ple 94.1 0.22 4.7E-06 47.6 7.8 79 247-336 19-105 (110)
143 PLN02270 phospholipase D alpha 94.1 0.18 3.8E-06 63.8 9.5 59 372-436 498-573 (808)
144 cd01242 PH_ROK Rok (Rho- assoc 93.9 0.57 1.2E-05 45.8 10.4 87 245-335 18-109 (112)
145 PF15410 PH_9: Pleckstrin homo 93.9 0.34 7.4E-06 47.9 9.3 103 212-336 1-118 (119)
146 KOG1329 Phospholipase D1 [Lipi 93.6 0.33 7.1E-06 61.5 10.5 57 372-433 565-628 (887)
147 cd01218 PH_phafin2 Phafin2 Pl 92.6 1.1 2.3E-05 43.6 10.2 84 243-336 14-98 (104)
148 KOG2059 Ras GTPase-activating 92.0 0.72 1.6E-05 57.0 9.9 150 172-354 520-676 (800)
149 cd01243 PH_MRCK MRCK (myotonic 91.8 1.2 2.5E-05 44.3 9.4 87 245-335 18-118 (122)
150 cd07291 PX_SNX5 The phosphoino 91.0 0.36 7.8E-06 48.9 5.2 29 171-199 112-140 (141)
151 PF07894 DUF1669: Protein of u 90.8 2.1 4.6E-05 48.5 11.5 144 763-967 133-279 (284)
152 cd01259 PH_Apbb1ip Apbb1ip (Am 89.9 0.55 1.2E-05 46.0 5.2 82 245-335 14-107 (114)
153 cd07292 PX_SNX6 The phosphoino 89.8 0.69 1.5E-05 46.9 5.9 31 169-199 110-140 (141)
154 KOG2273 Membrane coat complex 89.6 0.3 6.4E-06 59.7 4.0 97 62-202 127-229 (503)
155 cd01234 PH_CADPS CADPS (Ca2+-d 89.6 0.52 1.1E-05 45.4 4.6 84 245-336 17-110 (117)
156 cd06892 PX_SNX5_like The phosp 85.5 1.2 2.6E-05 45.5 4.8 25 175-199 116-140 (141)
157 cd07278 PX_RICS_like The phosp 84.9 4.2 9.2E-05 39.6 7.9 32 63-94 26-57 (114)
158 cd07298 PX_RICS The phosphoino 83.9 4.8 0.0001 39.4 7.8 33 63-95 27-59 (115)
159 KOG0905 Phosphoinositide 3-kin 82.9 1.9 4.1E-05 56.1 5.9 86 63-197 1392-1482(1639)
160 PF13090 PP_kinase_C: Polyphos 82.7 8.5 0.00019 44.8 10.6 123 378-570 23-160 (352)
161 PF13090 PP_kinase_C: Polyphos 81.5 2.2 4.7E-05 49.5 5.3 93 800-942 51-150 (352)
162 KOG1117 Rho- and Arf-GTPase ac 81.1 4.5 9.7E-05 51.3 8.0 140 173-336 990-1131(1186)
163 COG3886 Predicted HKD family n 80.9 14 0.00031 39.6 10.6 110 365-496 29-143 (198)
164 KOG3723 PH domain protein Melt 80.9 1.2 2.6E-05 53.8 3.0 108 204-336 728-836 (851)
165 COG0855 Ppk Polyphosphate kina 80.3 8 0.00017 48.1 9.8 106 369-495 348-464 (696)
166 KOG2528 Sorting nexin SNX9/SH3 77.5 3.9 8.5E-05 48.5 5.8 87 63-200 205-292 (490)
167 KOG0690 Serine/threonine prote 76.4 4.3 9.2E-05 46.7 5.5 96 212-337 16-117 (516)
168 cd01261 PH_SOS Son of Sevenles 76.3 22 0.00048 35.2 9.8 78 246-336 19-109 (112)
169 PF09565 RE_NgoFVII: NgoFVII r 76.0 1.8 3.8E-05 49.6 2.5 43 897-941 77-124 (296)
170 COG0855 Ppk Polyphosphate kina 75.9 12 0.00025 46.8 9.3 109 800-974 385-500 (696)
171 PF12814 Mcp5_PH: Meiotic cell 65.4 41 0.0009 33.5 9.2 34 302-335 87-120 (123)
172 KOG3751 Growth factor receptor 65.3 9.7 0.00021 46.1 5.4 85 245-335 331-423 (622)
173 PLN00188 enhanced disease resi 64.1 21 0.00046 45.3 8.3 82 249-338 25-111 (719)
174 PF06087 Tyr-DNA_phospho: Tyro 63.5 4.5 9.7E-05 48.9 2.4 40 898-938 346-402 (443)
175 PF11495 Regulator_TrmB: Archa 63.3 18 0.00039 39.9 6.8 52 761-827 7-58 (233)
176 KOG2101 Intermediate filament- 61.3 9.7 0.00021 44.7 4.6 37 59-95 131-172 (362)
177 COG3886 Predicted HKD family n 55.6 87 0.0019 33.9 9.9 55 763-830 38-92 (198)
178 cd01249 PH_oligophrenin Oligop 53.8 99 0.0021 30.4 9.2 35 299-333 66-102 (104)
179 KOG4424 Predicted Rho/Rac guan 50.7 41 0.00088 41.6 7.3 35 302-336 335-369 (623)
180 cd01222 PH_clg Clg (common-sit 44.7 79 0.0017 30.5 7.0 34 303-336 59-95 (97)
181 cd01232 PH_TRIO Trio pleckstri 44.1 1E+02 0.0023 30.5 7.9 35 301-335 74-111 (114)
182 PF06087 Tyr-DNA_phospho: Tyro 39.6 36 0.00078 41.3 4.8 65 900-967 101-170 (443)
183 KOG1090 Predicted dual-specifi 38.5 18 0.0004 46.7 2.1 79 245-335 1648-1730(1732)
184 KOG3964 Phosphatidylglycerolph 37.4 63 0.0014 38.4 5.9 56 764-830 39-94 (469)
185 KOG0521 Putative GTPase activa 34.3 34 0.00073 44.5 3.6 80 245-336 289-368 (785)
186 cd05394 RasGAP_RASA2 RASA2 (or 31.0 23 0.00049 41.1 1.1 66 175-255 241-312 (313)
187 PF08458 PH_2: Plant pleckstri 29.4 98 0.0021 30.7 5.0 35 302-336 69-103 (110)
188 cd01227 PH_Dbs Dbs (DBL's big 28.7 2.3E+02 0.005 29.0 7.7 33 304-336 83-115 (133)
189 COG5391 Phox homology (PX) dom 27.4 66 0.0014 40.0 4.3 28 164-191 217-244 (524)
190 cd01225 PH_Cool_Pix Cool (clon 27.2 3.5E+02 0.0075 27.0 8.3 80 247-335 28-108 (111)
191 PF12357 PLD_C: Phospholipase 24.9 89 0.0019 28.8 3.5 24 1063-1086 32-55 (74)
192 KOG3784 Sorting nexin protein 24.7 2.1E+02 0.0046 34.2 7.5 31 166-197 69-99 (407)
193 cd01231 PH_Lnk LNK-family Plec 23.1 3.9E+02 0.0084 26.3 7.6 30 304-334 77-106 (107)
194 PF10015 DUF2258: Uncharacteri 22.1 1.5E+02 0.0032 27.5 4.3 43 952-1008 7-49 (75)
195 cd01224 PH_Collybistin Collybi 21.4 4.8E+02 0.01 25.9 8.1 35 301-335 70-106 (109)
196 PTZ00267 NIMA-related protein 20.4 2E+02 0.0044 34.9 6.7 33 303-335 442-475 (478)
No 1
>PLN02866 phospholipase D
Probab=100.00 E-value=2.8e-258 Score=2303.39 Aligned_cols=1064 Identities=82% Similarity=1.352 Sum_probs=1005.5
Q ss_pred CCCcccccCCCCeEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001322 33 EPEPARIFDELPKASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEW 112 (1100)
Q Consensus 33 ~~~~~~~~~~~~~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~ 112 (1100)
.||+++||+|||+|+||+|+|+++++++|..+.|||||+|.+|||++.||++++++||++||+|+|++++|+||++.|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1068)
T PLN02866 2 LPESCRIFDELPKATIVSVSRPDAGDISPVLLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEW 81 (1068)
T ss_pred CCcccchhhhCCcceEEEEecCCCCCCCceEEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCccccccCcccccccc--ccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccCh
Q 001322 113 LQNLGMGDHMAVVQEDDEGDEIAV--NHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNS 190 (1100)
Q Consensus 113 ~~~lp~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~ 190 (1100)
|++|+|++|+++++|++|+||+++ |+++++++|+|||+|+||.+||+||+++++++|++.+||+||++||+++.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~ 161 (1068)
T PLN02866 82 LQNLGIGDHPAVVQDDDEPDDGTVPLHHDESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNS 161 (1068)
T ss_pred HHhcCcccCccccccccccccccccccchhhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCC
Confidence 999999999999999999999997 677899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccCCCCCCCCCcceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCCCc
Q 001322 191 REVCKFLEASKLSFSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKP 270 (1100)
Q Consensus 191 ~~l~~FLevS~~sf~~~~g~kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~~~ 270 (1100)
+++|+|||||.+||++|||+|||||||+|||+++++|++...+||+|+|++||..+|+|||||||+|||+||++|++++|
T Consensus 162 ~~~~~FlevS~lsf~~~~g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~ 241 (1068)
T PLN02866 162 REVCKFLEVSKLSFSPEYGPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKP 241 (1068)
T ss_pred HhhhhheeeceeeehhhcCCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCce
Confidence 99999999999999999999999999999999999998888999998899999999999999999999999999999999
Q ss_pred cEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHhccCCCCCCCCCCCCCC
Q 001322 271 MDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFG 350 (1100)
Q Consensus 271 ~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~~~~~~~~~~~~rf~ 350 (1100)
+||||||.+|.+.+++++++.+++.+|++|+++|||+|.|++|+|+|+|+|++++++|+++|+++..+++++|+.+|||+
T Consensus 242 ~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~ 321 (1068)
T PLN02866 242 LDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFG 321 (1068)
T ss_pred eEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhccCccccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCCCCcccCCCCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEE
Q 001322 351 SFAPPRGMTDDGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYI 430 (1100)
Q Consensus 351 sfap~r~~~~~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrI 430 (1100)
||||+|.++..||.++||+||++||++|++||++||++|+|++||||||+||++|+.+..+++|+++|++||++||+|||
T Consensus 322 SFAP~r~~~~~gN~vk~LvDG~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~rKAkrGVkVrV 401 (1068)
T PLN02866 322 SFAPPRGLTEDGSQAQWFIDGHAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEAKAKQGVQIYI 401 (1068)
T ss_pred CcCCCccccCCCCEEEEEeCHHHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHHHHHCCCEEEE
Confidence 99999976657999999999999999999999999999999999999999999986678999999999999999999999
Q ss_pred EEechhhhHhhcchhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCC
Q 001322 431 LLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDN 510 (1100)
Q Consensus 431 Ll~d~~~~~l~~~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~ 510 (1100)
|+||+++.++.+++.++++.|..+++||+|+++|.+++.+.++||||||+||||+++||+||+|||||||||++|++.|+
T Consensus 402 LLyD~vg~al~~~S~~~k~~L~~lh~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg~IAFvGGiNLc~GRWDT~~H~l~D~ 481 (1068)
T PLN02866 402 LLYKEVALALKINSVYSKRRLLGIHENVKVLRYPDHFSSGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTPEHRVGDC 481 (1068)
T ss_pred EEECccccccccCchhhHHHHHHhCCCeEEEecCcccccCcccccCCCCeEEECCCEEEecCcccCCCccCCcccccccc
Confidence 99999988778888888778888899999999998877677899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccC
Q 001322 511 PPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLM 590 (1100)
Q Consensus 511 ~~~~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~ 590 (1100)
++++|||+||+|+|++||.+|++|++|+|||..+||||||||||+|+||+|+||++||++|||++++.|++++..+|+++
T Consensus 482 ~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~ 561 (1068)
T PLN02866 482 PPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLM 561 (1068)
T ss_pred cccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred CccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccc
Q 001322 591 PQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFR 670 (1100)
Q Consensus 591 p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1100)
|+++|++|+|.|..++.+.+.++..++.+.++|++++++.++.+++|+++|++.++...+.++...++....+. ..|++
T Consensus 562 p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 640 (1068)
T PLN02866 562 PHHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNG-SLSFS 640 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCccccccccccccccccccccc-ccccc
Confidence 99999999999999888888887777778889999998888899999999998766555555555555443332 34677
Q ss_pred cccccccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEec
Q 001322 671 YQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRS 750 (1100)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS 750 (1100)
+++.+.+...++.|++++.++....+....+ ..+..+....+.+||++|.+.+|+.+..+.++++++++|.||||||
T Consensus 641 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS 717 (1068)
T PLN02866 641 FRKSKIEPVLPDTPMKGFVDDLGFLDLSVKM---SSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRS 717 (1068)
T ss_pred ccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccCCCCeEEEEEEee
Confidence 7888888888999999887765543332211 2233344556678999999999988888888999999999999999
Q ss_pred CCcccCCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCC
Q 001322 751 VSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPG 830 (1100)
Q Consensus 751 ~~~WS~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~ 830 (1100)
+++||+|++++|+||++||+++|++|+|||||||||||+++++++.|+|.|++||++||++|+++++.|+|+||||++|+
T Consensus 718 ~~~WS~G~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~ 797 (1068)
T PLN02866 718 VSQWSAGTSQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSGDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPG 797 (1068)
T ss_pred cccccCCCCchHHHHHHHHHHHHHhcccEEEEecccccccccccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCC
Confidence 99999999889999999999999999999999999999998788899999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeC
Q 001322 831 FQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDD 910 (1100)
Q Consensus 831 F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD 910 (1100)
|+|++.+++++++|+||+|||+|||||++||+++|+++.|.++.+||+||+||+|+++..++++|||+||||||+|||||
T Consensus 798 F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~~p~dYisf~~LRn~~~l~~~~~~vteqIYVHsK~~IvDD 877 (1068)
T PLN02866 798 FQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLLGPKTHDYISFYGLRAYGRLFEGGPLATSQIYVHSKIMIVDD 877 (1068)
T ss_pred cCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHeEeeecccccccccCCCcccceeeEEEeeEEEEcC
Confidence 99999998889999999999999999999999999998899999999999999999998899999999999999999999
Q ss_pred cEEEEcccccCcCccCCCCCcceeEEEEcCcccccccCCCCcchhhhHHHHHHHHHhhccCCCccccccccCCCChHHHH
Q 001322 911 SIALIGSANINDRSLLGSRDSEIGVLIEDKESVDSFMGGKPWKAGKLCLSLRLSLWSEHLGLRSREVNQIIDPVIDSTYK 990 (1100)
Q Consensus 911 ~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~~~~s~m~G~~~~ag~fa~~LR~~L~~eHLG~~~~~~~~~~dp~~~~~~~ 990 (1100)
++++|||||||+|||+|++|||++++|+|++.+++.|||++|.||+||++||++||+||||+.+++++.+.||++|+||+
T Consensus 878 ~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP~~d~~~k 957 (1068)
T PLN02866 878 RAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDPVCDTTYK 957 (1068)
T ss_pred cEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHhhCcCCCCccccHHHHHHHHHhhhhhcCCccccCCCCccccccccCCCCCCCCHHHhhcccceE
Q 001322 991 DIWVATARMNTTIYQDVFSCVPNDLIHTRAAIRQNIAFWKEKLGHTTIDLGIAPRNLESYQNGDIQKTDPLERLQAVRGH 1070 (1100)
Q Consensus 991 ~~W~~~a~~Nt~iy~~vF~c~P~d~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~i~G~ 1070 (1100)
++|+.+|++||+||++||+|+|+|.|+||.+|++|.+.||+++||+++|+|++++|++.+++|+++..++.++|++||||
T Consensus 958 ~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~l~~I~G~ 1037 (1068)
T PLN02866 958 DLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMERLKSVRGH 1037 (1068)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHHHHHhhceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccchhhccCCCCCCCCcccccc-ccCC
Q 001322 1071 LVSFPLDFMCKEDLRPVFNESEYYAA-QVFY 1100 (1100)
Q Consensus 1071 lV~~Pl~Fl~~e~l~p~~~~~e~~~~-~~~~ 1100 (1100)
||+|||+|||+|||+|++++||||+| ||||
T Consensus 1038 lV~fPL~Fl~~E~L~p~~~~~e~~~~~~~~~ 1068 (1068)
T PLN02866 1038 LVSFPLDFMCQEDLRPVFNESEYYASPQVFH 1068 (1068)
T ss_pred EEechhhhhhhccCCCCcCccceecCccccC
Confidence 99999999999999999999999999 9999
No 2
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=6e-172 Score=1520.41 Aligned_cols=853 Identities=40% Similarity=0.654 Sum_probs=726.1
Q ss_pred ccccccccccCCCCCcccccCCCC----eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHH
Q 001322 21 TSSFFTSVGSGPEPEPARIFDELP----KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRR 96 (1100)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~----~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~ 96 (1100)
......+.+.+.... -++++.+| ++.|++++|+++...++..++||++|.||+|+|+|++.++++..||+.|.++
T Consensus 21 ~~~~~~a~~~~~~~~-~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~ 99 (887)
T KOG1329|consen 21 RAQPFAAIYELQGAK-PRRLEFLPGVPVFAAVVGVERPTSHPFVPSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHAR 99 (887)
T ss_pred hhhhhHHHhhhccce-eeccccccCCcccccccceecccccccccCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhh
Confidence 334455555555555 57777777 6789999999998889999999999999999999999999999999999863
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHH
Q 001322 97 AFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQ 176 (1100)
Q Consensus 97 ~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~ 176 (1100)
..+..+.- +..+++ .| ...+.|+ .|...+ ..+-++++.+|+
T Consensus 100 ~~~~~~~~--------~~~~~~-------~~---------------~~~~~p~---~~~~~~------~~~~~~~~~~e~ 140 (887)
T KOG1329|consen 100 LLGESFPD--------LGRLNI-------ND---------------NHDEKPS---GPRSSL------NSSMEKRKTLEN 140 (887)
T ss_pred hhcccccc--------cccccc-------cc---------------cccccCC---CccCCc------ccchhhhhhccc
Confidence 33322100 111111 00 0022333 222111 111233568999
Q ss_pred HHHHHHhhccccChhhhhhhhhccccCCCCCCCCCcceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcC
Q 001322 177 YLNHFLGNMDIVNSREVCKFLEASKLSFSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKP 256 (1100)
Q Consensus 177 YL~~lL~~~~~~~~~~l~~FLevS~~sf~~~~g~kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~ 256 (1100)
||+.+|.+..+++++.+++|||+|.++|+.++|.++++|+++++.+ | .+| ..|+++|.+||+
T Consensus 141 Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~----~----~~~----------~G~s~~w~~v~~ 202 (887)
T KOG1329|consen 141 YLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVK----G----ARV----------PGWSKRWGRVKI 202 (887)
T ss_pred hheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeec----C----Ccc----------ccceeEEEEecc
Confidence 9999999999999999999999999999999999999999999842 1 111 238899999999
Q ss_pred CeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 257 GFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 257 s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
||+.||+++..+.+.+|+.+|..+.. + ++.+..+.++.+.+..|.+.++|.+.+++++|..++.++.
T Consensus 203 s~~~~~~~~~~~~~~~Il~~d~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~ 269 (887)
T KOG1329|consen 203 SFLQYCSGHRIGGWFPILDNDGKPHQ-----------K--GSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQR 269 (887)
T ss_pred chhhhhccccccceeeeeccCCcccc-----------C--CcccceEEeeEeechhhhhhheeccccccCCccceeeehh
Confidence 99999999999999999999963211 1 2234567999999999999999999999999999999877
Q ss_pred CCCCCCCC-CCCCCCCCCCCcccCCCCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHH
Q 001322 337 LRPPEGWC-HPHRFGSFAPPRGMTDDGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLD 415 (1100)
Q Consensus 337 ~~~~~~~~-~~~rf~sfap~r~~~~~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~ 415 (1100)
...+..+. ..|||+||+|+| .++.++|++||..||+++++||++||+.|||+||||+||+||+||+.+..++||+
T Consensus 270 ~g~gv~~~qd~Hr~~sf~P~r----~~~~~kw~vd~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLd 345 (887)
T KOG1329|consen 270 KGCGVTLYQDAHRFDSFAPVR----TLDGGKWFVDGKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLD 345 (887)
T ss_pred ccCceeeeecccccCCcCCcc----cCCCceEEEchhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHH
Confidence 55554444 499999999999 5889999999999999999999999999999999999999999998887899999
Q ss_pred HHHHHHhhCCcEEEEEEechhhhHhhcchhhhHHHhhccCCCeEEEEcCCCcccC-cccccCcceEEEEeCcEEEEcccc
Q 001322 416 ALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFASG-VYLWSHHEKLVIVDYQICFIGGLD 494 (1100)
Q Consensus 416 ~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~L~~l~~nI~V~r~p~~~~~~-~~~~~hHqKivVID~~vAfvGGiN 494 (1100)
++|++||++||+|+|||||++.+++.+++.|+++.+..+|+||+|+++|++...+ .++|+||||+||||..+|||||+|
T Consensus 346 elLK~KAeeGVrV~ilv~kdv~s~~~i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~~~~wtHHeK~VVVD~~v~fvGGlD 425 (887)
T KOG1329|consen 346 ELLKRKAEEGVRVLILVWKDVTSALGINSHYEKTRLFFLHPNVKVLRCPRHPGSGPTTLWTHHEKLVVVDQEVAFVGGLD 425 (887)
T ss_pred HHHHHHHhCCcEEEEEEeccchhccccCchhHHHHHhhcCCCeEEEECCCCcCCCCceEEecceEEEEEcceecccccee
Confidence 9999999999999999999999999999999999999999999999999998776 589999999999999999999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHh
Q 001322 495 LCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNY 574 (1100)
Q Consensus 495 L~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~ 574 (1100)
||+|||||++|+|+|. .+.|+|+||+|++++|+.+ +||...||||||||||+|.||+|+||++||+||||+
T Consensus 426 LC~GRYDT~eH~L~d~-~~~~~gkDy~n~~~~~~~~--------~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~ 496 (887)
T KOG1329|consen 426 LCDGRYDTPEHPLFDT-LQTWHGKDYHNPNFKDFVD--------IDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNK 496 (887)
T ss_pred ccccccCCcccccccc-ccccccccccCcccccchh--------cccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHH
Confidence 9999999999999997 4789999999999988753 899999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCccccCCccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCC
Q 001322 575 AKRNKAPNEETIPLLMPQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGL 654 (1100)
Q Consensus 575 ~~~~k~~~~~~~~~l~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~ 654 (1100)
+++.|.++...+|+|+|.+++..|++. .+.
T Consensus 497 ~~~~K~~~~~~~p~L~p~~~~~~~~~~----------------------------------------~~~---------- 526 (887)
T KOG1329|consen 497 QKREKKPYDDSLPLLLPISDITGPSEP----------------------------------------NEE---------- 526 (887)
T ss_pred HhcccCCCCccceeecChhhhcCCCCc----------------------------------------ccc----------
Confidence 999998877889999997764433221 000
Q ss_pred cCCCCCcccccccccccccccccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCcc
Q 001322 655 IPNGLDYTTTKSASFRYQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDET 734 (1100)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1100)
+++.++++...| +
T Consensus 527 ------------------------------------~~e~~~~q~f~s-----------i-------------------- 539 (887)
T KOG1329|consen 527 ------------------------------------DPESWHVQVFRS-----------I-------------------- 539 (887)
T ss_pred ------------------------------------ccccccccceee-----------c--------------------
Confidence 000111110001 1
Q ss_pred CCCCCCCCceEEEEecCCcccCCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHH
Q 001322 735 GQVGPRASCRCQIIRSVSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYN 814 (1100)
Q Consensus 735 ~~~~~~~~~~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~ 814 (1100)
...+.+.+|++||++.||+|..++|.||++||+++|++|||||||||||||+++..+..+.|+++++|+.||++|++
T Consensus 540 ---~~gs~~~~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~~~n~v~~ela~rIv~a~r 616 (887)
T KOG1329|consen 540 ---DGGSVAGPQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDSVLNKVGDELALRIVKAIR 616 (887)
T ss_pred ---cCCcccchHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCcccchHHHHHHHHHHHHHh
Confidence 01223458999999999999999999999999999999999999999999999876788999999999999999999
Q ss_pred cCCCeEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccC-CCC
Q 001322 815 EKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFE-DGP 893 (1100)
Q Consensus 815 ~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~-~g~ 893 (1100)
+++.|+||||||++|||+|+ +.++++++|+||||||||||+|++||+++|++ .|.++.+|+.||+||.++.+.. +++
T Consensus 617 a~e~frVYIVIPL~PgfEG~-~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka-~g~d~~~yi~f~~lr~~g~~e~~~~~ 694 (887)
T KOG1329|consen 617 AGEKFRVYIVIPLWPGFEGD-DTPGSGSVQAILHWQYRTMSMGYKSIYKALKA-VGLDPADYIDFLGLRCLGNREEQAQR 694 (887)
T ss_pred cCCceEEEEEEeCCccccCC-CCCCcchHHHHHHHHHHHHhhhHHHHHHHHHH-hcCCccccceeeeeeeeecccccccc
Confidence 99999999999999999999 88999999999999999999999999999999 5888899999999999998854 788
Q ss_pred ccccceeeeeeEEEEeCcEEEEcccccCcCccCCCCCcceeEEEEcCcccccccCCCCcchhhhHHHHHHHHHhhccCCC
Q 001322 894 VATSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLIEDKESVDSFMGGKPWKAGKLCLSLRLSLWSEHLGLR 973 (1100)
Q Consensus 894 ~vte~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~~~~s~m~G~~~~ag~fa~~LR~~L~~eHLG~~ 973 (1100)
+++++||||||+|||||+++||||||||+|||+|+||||||++++|++.+.|+|||+|| +||++||++||+||||+.
T Consensus 695 ~~~emIYVHsK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~---~f~~~lR~slw~EHLG~~ 771 (887)
T KOG1329|consen 695 LRREMIYVHSKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPY---GFIYGLRMSLWREHLGLL 771 (887)
T ss_pred ceEEEEEEeeeeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcch---hHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred cc-----ccccccCCCChHHHHHHHHHHHHHhHHHHHHhhCcCCCCccccH-HHHHHHHHhhhhhcCCccccCCCCcccc
Q 001322 974 SR-----EVNQIIDPVIDSTYKDIWVATARMNTTIYQDVFSCVPNDLIHTR-AAIRQNIAFWKEKLGHTTIDLGIAPRNL 1047 (1100)
Q Consensus 974 ~~-----~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy~~vF~c~P~d~v~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 1047 (1100)
.+ +.....|||++.+| ++|+.+|..|+.+|+.+|+|+|.|.++++ ......++...+..+|.+....
T Consensus 772 ~d~~~~Pe~~ec~dpv~d~~~-~~W~~~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~------ 844 (887)
T KOG1329|consen 772 DDAFEEPESLECEDPVRDLFE-DLWQRYAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKS------ 844 (887)
T ss_pred cccccCcchhhhhhhHHHHHH-HHHHHHHhhhhhhhhceEEEcccccccCcceeecCCcccccccccccccccc------
Confidence 87 34568899999998 99999999999999999999999999999 4444444433333444332211
Q ss_pred ccccCCCCCCCCHHHhhcccceEEeecccchhhccCCCCCCCCcccccc-ccCC
Q 001322 1048 ESYQNGDIQKTDPLERLQAVRGHLVSFPLDFMCKEDLRPVFNESEYYAA-QVFY 1100 (1100)
Q Consensus 1048 ~~~~~g~~~~~~~~~~L~~i~G~lV~~Pl~Fl~~e~l~p~~~~~e~~~~-~~~~ 1100 (1100)
++.+++..++|+||.|||.|||+|+|+|.+++||.++| +||+
T Consensus 845 -----------~~~~~~lt~~g~l~~fp~~~~~~~~~rp~~~s~e~~~p~~v~~ 887 (887)
T KOG1329|consen 845 -----------DALPENLTTRGFLVSFPLYFLCKESLRPWLGSKERLVPLEVYT 887 (887)
T ss_pred -----------ccCCccccccceeeeeeeEEeehhhcCCCcCccccCCCccCCC
Confidence 13345667799999999999999999999999999999 9986
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=2.1e-99 Score=906.02 Aligned_cols=512 Identities=29% Similarity=0.457 Sum_probs=404.2
Q ss_pred EEEEeCchhhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccCCCCCeEEEEecH----------------HHHHHHH
Q 001322 315 IRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGMTDDGSQAQWFVDG----------------KAAFEAI 378 (1100)
Q Consensus 315 l~l~~~~~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvdG----------------~~~f~al 378 (1100)
+.++.....+..-|...|.... + ..-+ ..|.|.| .|+.|+||.|+ .+||++|
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~------~-~gvp-~~~f~~r----~g~~v~lyqdah~~~~~~p~i~l~~~~~~~f~al 192 (758)
T PLN02352 125 FMLWFRPAELEPTWCKILENGS------F-QGLR-NATFPQR----SNCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDV 192 (758)
T ss_pred EEEEEEEhhhCcchhhcccCCC------c-CCcC-CcccccC----CCCEEEEEecCCCccccCCcceeecCHHHHHHHH
Confidence 5566666666677887774321 1 1111 3678888 68999998885 6689999
Q ss_pred HHHHHhcccEEEEeeecCCceeEEEcCCC----CchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcc-----hhhhHH
Q 001322 379 ASSIEDAKSEIFICGWWLCPELYLRRPFH----NHASSRLDALLEAKAKQGVQIYILLYKEVALALKIN-----SVYSKR 449 (1100)
Q Consensus 379 ~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~----~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~-----s~~~k~ 449 (1100)
.+||.+||++|||++||++|+++|+|++. +..+.+|+++|++||++||+|+||+||+.++...+. +.+...
T Consensus 193 ~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~ 272 (758)
T PLN02352 193 YKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDED 272 (758)
T ss_pred HHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHH
Confidence 99999999999999999999999998742 246789999999999999999999999765421110 111111
Q ss_pred Hhh-ccCCCeEEEEcCCCcccCcccccCcceEEEEeCc----------EEEEccccCCCCCcCCCCCCCCCCCCCCCCCC
Q 001322 450 KLL-SIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQ----------ICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGK 518 (1100)
Q Consensus 450 ~L~-~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~----------vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~ 518 (1100)
.+. -.|.+|.+...|.........|+||||+||||+. +|||||+|||+|||||++|+++|...+.++++
T Consensus 273 ~~~~f~h~~V~~~l~pr~~~~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~ 352 (758)
T PLN02352 273 AFAYFKHTKVVCKLCPRLHKKFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQ 352 (758)
T ss_pred HHhhccCCceEEeeccccccccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccc
Confidence 221 2377888765553212234679999999999986 99999999999999999999999988888888
Q ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccccccc
Q 001322 519 DYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVIP 598 (1100)
Q Consensus 519 dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~~ 598 (1100)
||+|+... ...++...||||||||||+|+||||+||+++|+||||.+++.. +++|...
T Consensus 353 Df~~~~~~----------g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~--------~l~p~~~---- 410 (758)
T PLN02352 353 DFYQTSIA----------GAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS--------VLVPTSS---- 410 (758)
T ss_pred cccccccc----------cccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc--------ccCCccc----
Confidence 99886432 1123456799999999999999999999999999999876432 2222110
Q ss_pred cccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccccccccccc
Q 001322 599 HYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIEP 678 (1100)
Q Consensus 599 ~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1100)
. .++. .+|..
T Consensus 411 ----------------------------~------~~~~-~~p~~----------------------------------- 420 (758)
T PLN02352 411 ----------------------------I------RNLV-HQPGS----------------------------------- 420 (758)
T ss_pred ----------------------------c------cccc-cCCCC-----------------------------------
Confidence 0 0000 00000
Q ss_pred cccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEecCCcccCCC
Q 001322 679 VVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSAGT 758 (1100)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS~G~ 758 (1100)
.....+++.|||+||++.||++.
T Consensus 421 ---------------------------------------------------------~~~~~~~w~VQv~RSid~~sa~~ 443 (758)
T PLN02352 421 ---------------------------------------------------------SESNNRNWKVQVYRSIDHVSASH 443 (758)
T ss_pred ---------------------------------------------------------CcccCCcccceEEEecCcccccc
Confidence 00124578999999999999863
Q ss_pred ----cccHHHHHHHHHHHHHhcccEEEEEeeecccCCCC-----ChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCC
Q 001322 759 ----SQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSG-----DEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLP 829 (1100)
Q Consensus 759 ----~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~-----~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P 829 (1100)
...|+||++||++||++||||||||||||++++.. +..+.|.|+.+|++||.+|++++++|+|+||+|++|
T Consensus 444 ~P~~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~P 523 (758)
T PLN02352 444 MPRNLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWP 523 (758)
T ss_pred CCCCCchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 23699999999999999999999999999998532 346999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCC--CcccccccccccccccccCCCCcc------------
Q 001322 830 GFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGP--KTHDYISFYGLRAYGRLFEDGPVA------------ 895 (1100)
Q Consensus 830 ~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~--~~~~Yi~f~~Lr~~~~~~~~g~~v------------ 895 (1100)
++.+ .+.++++||+|||+||++++.+|.+.|+++ |. +|.+||+||+||+++....+ .++
T Consensus 524 eG~~-----e~~~vq~il~wq~~TM~~~y~~I~~~L~~~-g~~~~P~dYl~F~cL~n~e~~~~g-~~~~~~~p~~~~~~~ 596 (758)
T PLN02352 524 EGVP-----ESEPVQDILHWTRETMAMMYKLIGEAIQES-GEPGHPRDYLNFFCLANREEKRKG-EFVPPYSPHQKTQYW 596 (758)
T ss_pred CCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHc-CccCChhHheeeecccccccccCC-ccccccCCCCCchhh
Confidence 8432 256899999999999999999999999984 64 68999999999999765332 221
Q ss_pred ------ccceeeeeeEEEEeCcEEEEcccccCcCccCCCCCcceeEEEEcCcccccccCCCCcchhhhHHHHHHHHHhhc
Q 001322 896 ------TSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLIEDKESVDSFMGGKPWKAGKLCLSLRLSLWSEH 969 (1100)
Q Consensus 896 ------te~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~~~~s~m~G~~~~ag~fa~~LR~~L~~eH 969 (1100)
.++||||||+|||||+++||||||||+|||.|++|||||+.+++++...+.|+ ++++++||++||+||
T Consensus 597 ~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~~~~------~~~i~~~R~~L~~EH 670 (758)
T PLN02352 597 NAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTNTNN------PRDIQAYRMSLWYEH 670 (758)
T ss_pred hcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCCccc------chHHHHHHHHHHHHH
Confidence 14799999999999999999999999999999999999999999886655544 568999999999999
Q ss_pred cCCCccccccccCCCChHHHHHHHHHHHHHhHHHH
Q 001322 970 LGLRSREVNQIIDPVIDSTYKDIWVATARMNTTIY 1004 (1100)
Q Consensus 970 LG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy 1004 (1100)
||+.++ ...+|-+.+..+.+ +.+|..|.++|
T Consensus 671 LG~~~~---~f~~p~s~ec~~~v-~~~~~~~w~~y 701 (758)
T PLN02352 671 TGLDEE---SFLEPESLECVRRL-RTIGEQMWEIY 701 (758)
T ss_pred hCCCHH---HhcCCCCHHHHHHH-HHHHHHHHHhh
Confidence 999874 57899999998887 88888887776
No 4
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=5.7e-93 Score=850.31 Aligned_cols=545 Identities=31% Similarity=0.489 Sum_probs=408.3
Q ss_pred EEEEeCchhhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccCCCCCeEEEEecHH--------------------HH
Q 001322 315 IRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGMTDDGSQAQWFVDGK--------------------AA 374 (1100)
Q Consensus 315 l~l~~~~~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvdG~--------------------~~ 374 (1100)
+.|....-.+..-|...|......++ --..|.|.| .|+.|++|-|+. .+
T Consensus 172 v~lqf~pv~~~~~~~~gv~~~~~~~g-------vp~t~Fp~r----~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rc 240 (868)
T PLN03008 172 IDMKFTPFDQIHSYRCGIAGDPERRG-------VRRTYFPVR----KGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKC 240 (868)
T ss_pred EEEEEEEccccccccccccCCcCCCC-------CCCccccCC----CCCEeEEeccCCCCCCCCCccccCCCcccccccc
Confidence 45556666666668776654211111 114788998 699999999854 47
Q ss_pred HHHHHHHHHhcccEEEEeeecCCceeEEEcCC--CCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhc----------
Q 001322 375 FEAIASSIEDAKSEIFICGWWLCPELYLRRPF--HNHASSRLDALLEAKAKQGVQIYILLYKEVALALKI---------- 442 (1100)
Q Consensus 375 f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~--~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~---------- 442 (1100)
|++|++||++||+.|||+||||+||+||+|++ ..+.+.+|+++|++||++||+|+|||||+..+...+
T Consensus 241 wedi~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~t 320 (868)
T PLN03008 241 WEDICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGT 320 (868)
T ss_pred HHHHHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccc
Confidence 89999999999999999999999999999985 234578999999999999999999999987653111
Q ss_pred chhhhHHHhhccCCCeEEEEcCCC------cc--------------cCcccccCcceEEEEeCc--------EEEEcccc
Q 001322 443 NSVYSKRKLLSIHENVRVLRYPDH------FA--------------SGVYLWSHHEKLVIVDYQ--------ICFIGGLD 494 (1100)
Q Consensus 443 ~s~~~k~~L~~l~~nI~V~r~p~~------~~--------------~~~~~~~hHqKivVID~~--------vAfvGGiN 494 (1100)
....+.+.+ .|++|.+...|.. +. ...++|+||||+||||+. +|||||+|
T Consensus 321 hdeet~~~f--~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiD 398 (868)
T PLN03008 321 HDEETRKFF--KHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLD 398 (868)
T ss_pred ccHHHHHhh--cCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEccee
Confidence 111122222 4789998887742 00 112679999999999995 99999999
Q ss_pred CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHh
Q 001322 495 LCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNY 574 (1100)
Q Consensus 495 L~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~ 574 (1100)
||+|||||++|++++...+.|+ +||+|++.. ++...|++||||+|++|+||+|++|+++|.+||+.
T Consensus 399 Lc~gRwDT~~H~l~~~l~t~~~-~D~~np~~~-------------~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~ 464 (868)
T PLN03008 399 LCDGRYDTPEHRILHDLDTVFK-DDFHNPTFP-------------AGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRK 464 (868)
T ss_pred ccCCccCCcCCCcccccccccc-ccccCcccc-------------CCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999988777777 899998632 35678999999999999999999999999999999
Q ss_pred hhcCCCCCCCCccccCCccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCC
Q 001322 575 AKRNKAPNEETIPLLMPQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGL 654 (1100)
Q Consensus 575 ~~~~k~~~~~~~~~l~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~ 654 (1100)
+++.+..... .-.. .. ..++....+.|...+ +.|..... .++.
T Consensus 465 aTg~~~~~~~-~k~~-~~--------------------~~~d~l~~~~~~~~~-----------~~p~~~~~----~~~~ 507 (868)
T PLN03008 465 ATRWKEFSLR-LKGK-TH--------------------WQDDALIRIGRISWI-----------LSPVFKFL----KDGT 507 (868)
T ss_pred hhCccccccc-cccc-cc--------------------cccchhcchhhcccc-----------cCCCcccc----cccc
Confidence 9875421000 0000 00 001111112221100 11110000 0000
Q ss_pred cCCCCCcccccccccccccccccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCcc
Q 001322 655 IPNGLDYTTTKSASFRYQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDET 734 (1100)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1100)
...+ . + ....|.
T Consensus 508 --------------------------~~~~-----~------------------~----~~~~~~--------------- 519 (868)
T PLN03008 508 --------------------------SIIP-----E------------------D----DPCVWV--------------- 519 (868)
T ss_pred --------------------------cccc-----C------------------C----CCccCc---------------
Confidence 0000 0 0 000000
Q ss_pred CCCCCCCCceEEEEecCCcccCCC-c-----------------ccHHHHHHHHHHHHHhcccEEEEEeeecccCCC----
Q 001322 735 GQVGPRASCRCQIIRSVSQWSAGT-S-----------------QLEESIHCAYCSLIEKAEHFIYIENQFFISGLS---- 792 (1100)
Q Consensus 735 ~~~~~~~~~~vQilRS~~~WS~G~-~-----------------~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~---- 792 (1100)
......++..||++||+..||+.. + .+|.||++||++||++||||||||||||++++.
T Consensus 520 ~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~ 599 (868)
T PLN03008 520 SKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPS 599 (868)
T ss_pred cccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccccccc
Confidence 000123567899999999998732 2 258999999999999999999999999999853
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcC-
Q 001322 793 -GDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLG- 870 (1100)
Q Consensus 793 -~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G- 870 (1100)
.+..+.|.|..+|+.||.++++++++|+|+||+|.+|+ |+ ++++++|+||+||++||++++.+|+++|+++ |
T Consensus 600 ~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~pe--G~---~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~-~~ 673 (868)
T PLN03008 600 YRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPE--GD---PKSGPVQEILYWQSQTMQMMYDVIAKELKAV-QS 673 (868)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCC--CC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Confidence 23478999999999999999999999999999999996 43 3456899999999999999999999999984 4
Q ss_pred -CCcccccccccccccccccC-----CCCcccc-------ceeeeeeEEEEeCcEEEEcccccCcCccCCCCCcceeEEE
Q 001322 871 -PKTHDYISFYGLRAYGRLFE-----DGPVATS-------QVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLI 937 (1100)
Q Consensus 871 -~~~~~Yi~f~~Lr~~~~~~~-----~g~~vte-------~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I 937 (1100)
.++.+|++||+||+++.... .+..+++ +||||||+|||||++++|||||||+|||.|+||||+++.+
T Consensus 674 d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~ 753 (868)
T PLN03008 674 DAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGA 753 (868)
T ss_pred cCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEe
Confidence 46779999999999976532 2223333 7999999999999999999999999999999999999999
Q ss_pred EcCcccccccCCCCcchhhhHHHHHHHHHhhccCCCccccccccCCCChHHHHHHHHHHHHHhHHHH
Q 001322 938 EDKESVDSFMGGKPWKAGKLCLSLRLSLWSEHLGLRSREVNQIIDPVIDSTYKDIWVATARMNTTIY 1004 (1100)
Q Consensus 938 ~d~~~~~s~m~G~~~~ag~fa~~LR~~L~~eHLG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy 1004 (1100)
+++....+.+++.+ ...++.||++||+||||+.++ .+.+|.+.+..+.+ +.+|..|.+.|
T Consensus 754 ~~~~~~~~~~~~~~---rg~I~g~R~sLwaEHLG~~~~---~~~~p~s~ecv~~v-n~~a~~~w~~y 813 (868)
T PLN03008 754 YQPNHTWAHKGRHP---RGQVYGYRMSLWAEHLGKTGD---EFVEPSDLECLKKV-NTISEENWKRF 813 (868)
T ss_pred ccccccccccCcch---hhHHHHHHHHHHHHHhCCCHH---HccCCCCHHHHHHH-HHHHHHHHHHh
Confidence 99887655555433 457999999999999999875 47889999999888 88999887776
No 5
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=4.2e-86 Score=792.27 Aligned_cols=513 Identities=30% Similarity=0.483 Sum_probs=386.3
Q ss_pred EEEEeCchhhHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCcccCCCCCeEEEEecHH--------------------HH
Q 001322 315 IRLRTRTGAKVRDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGMTDDGSQAQWFVDGK--------------------AA 374 (1100)
Q Consensus 315 l~l~~~~~~~~~~w~~~i~~~~~~~~~~~~~~~rf~sfap~r~~~~~gn~v~~lvdG~--------------------~~ 374 (1100)
+.++.....+..-|...+.... +.. --..|.|.| .|+.|++|-|+. .+
T Consensus 143 ~~~~f~~~~~~~~~~~gv~~~~------~~g--vp~t~f~~r----~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~c 210 (808)
T PLN02270 143 VKLQYFEVTKDRNWGRGIRSAK------FPG--VPYTFFSQR----QGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRC 210 (808)
T ss_pred EEEEEEEcccCcchhcccCCcC------cCC--CCCcccccC----CCCeeEEeccccCCCCCCCccccCCCcccchhhh
Confidence 4566666666666877773321 111 114788988 699999999853 46
Q ss_pred HHHHHHHHHhcccEEEEeeecCCceeEEEcCCC---CchhHHHHHHHHHHhhCCcEEEEEEechhhhHh--hcc------
Q 001322 375 FEAIASSIEDAKSEIFICGWWLCPELYLRRPFH---NHASSRLDALLEAKAKQGVQIYILLYKEVALAL--KIN------ 443 (1100)
Q Consensus 375 f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~---~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l--~~~------ 443 (1100)
++++.+||.+||++|||++||++|+++|+|+.. .+...+|+++|++||++||+|+||+||+..+.. ...
T Consensus 211 wedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~th 290 (808)
T PLN02270 211 WEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATH 290 (808)
T ss_pred HHHHHHHHHhhhcEEEEEEeecCCCceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccC
Confidence 999999999999999999999999999998521 234579999999999999999999999865421 111
Q ss_pred hhhhHHHhhccCCCeEEEEc---CCCc------ccCcccccCcceEEEEeCc-----------EEEEccccCCCCCcCCC
Q 001322 444 SVYSKRKLLSIHENVRVLRY---PDHF------ASGVYLWSHHEKLVIVDYQ-----------ICFIGGLDLCFGRYDTF 503 (1100)
Q Consensus 444 s~~~k~~L~~l~~nI~V~r~---p~~~------~~~~~~~~hHqKivVID~~-----------vAfvGGiNL~~GRwDt~ 503 (1100)
...+++.+. +.+|++... |+.- ......++||||+||||+. +|||||+|||+|||||+
T Consensus 291 d~~t~~~f~--~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~ 368 (808)
T PLN02270 291 DEETENFFR--GTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTP 368 (808)
T ss_pred HHHHHHHhc--cCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCc
Confidence 112222222 456765533 4310 0123579999999999998 99999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCC
Q 001322 504 EHKIGDNPPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNE 583 (1100)
Q Consensus 504 ~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~ 583 (1100)
+|++++...+. +++||.|+++.+ .-++...||+||||+|++|+||+|.+|+++|.+||+.++++...
T Consensus 369 ~H~lf~~Ldt~-h~~Df~~p~~~~----------~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll-- 435 (808)
T PLN02270 369 FHSLFRTLDTA-HHDDFHQPNFTG----------ASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDIL-- 435 (808)
T ss_pred ccccccccccc-ccccccCccccc----------ccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccch--
Confidence 99998766544 467888765432 11245679999999999999999999999999999998654311
Q ss_pred CCccccCCccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccc
Q 001322 584 ETIPLLMPQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTT 663 (1100)
Q Consensus 584 ~~~~~l~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~ 663 (1100)
.+. .+ +..+ ..|++..
T Consensus 436 ------~~~-----------------------------~~---------~~~~--~~P~~~~------------------ 451 (808)
T PLN02270 436 ------VQL-----------------------------RE---------LEDV--IIPPSPV------------------ 451 (808)
T ss_pred ------hhh-----------------------------cc---------cccc--cCCCCcc------------------
Confidence 000 00 0000 0111000
Q ss_pred ccccccccccccccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCc
Q 001322 664 TKSASFRYQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASC 743 (1100)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1100)
+ + ....+++
T Consensus 452 --------------------~---~------------------------------------------------p~d~~~w 460 (808)
T PLN02270 452 --------------------M---F------------------------------------------------PDDHEVW 460 (808)
T ss_pred --------------------c---C------------------------------------------------CCcCCcc
Confidence 0 0 0012356
Q ss_pred eEEEEecCCcccC-C-----------------CcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCC---------hH
Q 001322 744 RCQIIRSVSQWSA-G-----------------TSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGD---------EI 796 (1100)
Q Consensus 744 ~vQilRS~~~WS~-G-----------------~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~---------~~ 796 (1100)
.||++||++.+++ | +...|+||+.||++||++||||||||||||++++..+ ..
T Consensus 461 ~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~ 540 (808)
T PLN02270 461 NVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDIN 540 (808)
T ss_pred ccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhccccccccccc
Confidence 7888888765432 1 1124789999999999999999999999999986432 13
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCC--Ccc
Q 001322 797 IRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGP--KTH 874 (1100)
Q Consensus 797 v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~--~~~ 874 (1100)
+.|.|..+|+.||.++++++++|+|+||+|.+|+ | +. +++++|+||+||++||++++.+++++|+++ |. ++.
T Consensus 541 ~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~pe--G-~~--e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~-g~~~dp~ 614 (808)
T PLN02270 541 ALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPE--G-IP--ESGSVQAILDWQRRTMEMMYKDVIQALRAK-GLEEDPR 614 (808)
T ss_pred ccccchHHHHHHHHHHHhCCCCCEEEEEECCCCC--C-Cc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHc-CccCCcc
Confidence 5689999999999999999999999999999997 3 33 356899999999999999999999999994 65 789
Q ss_pred cccccccccccccccCC--CCc---------------cccceeeeeeEEEEeCcEEEEcccccCcCccCCCCCcceeEEE
Q 001322 875 DYISFYGLRAYGRLFED--GPV---------------ATSQVYVHSKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLI 937 (1100)
Q Consensus 875 ~Yi~f~~Lr~~~~~~~~--g~~---------------vte~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I 937 (1100)
+|++||+|++++....+ .|. ..++||||||+|||||++++|||||||+|||.|++||||++..
T Consensus 615 dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a 694 (808)
T PLN02270 615 NYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGG 694 (808)
T ss_pred ceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcc
Confidence 99999999988643211 011 1247999999999999999999999999999999999999987
Q ss_pred EcCcccccccCCCCcchhhhHHHHHHHHHhhccCCCccccccccCCCChHHHHHHHHHHHHHhHHHH
Q 001322 938 EDKESVDSFMGGKPWKAGKLCLSLRLSLWSEHLGLRSREVNQIIDPVIDSTYKDIWVATARMNTTIY 1004 (1100)
Q Consensus 938 ~d~~~~~s~m~G~~~~ag~fa~~LR~~L~~eHLG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy 1004 (1100)
+++....+ +. .++.+++.||++||+||||+..+ .+.+|-+.+..+.+ +.+|..|.++|
T Consensus 695 ~qp~~~~~---~~--~~r~~i~~~R~~Lw~EHLG~~~~---~f~~p~s~~cv~~v-~~~a~~~w~~y 752 (808)
T PLN02270 695 YQPYHLST---RQ--PARGQIHGFRMSLWYEHLGMLDE---TFLDPESEECIQKV-NQIADKYWDLY 752 (808)
T ss_pred cCcccccc---cc--chHHHHHHHHHHHHHHHhCCChh---HhhCCCcHHHHHHH-HHHHHHHHHHh
Confidence 66643332 11 35678999999999999999764 47899999998766 89999988776
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.3e-47 Score=456.64 Aligned_cols=325 Identities=25% Similarity=0.402 Sum_probs=247.4
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHh
Q 001322 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL 440 (1100)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l 440 (1100)
.||.+++|+||+++|++++++|++||++|+| ++|++++ |..+.++.++|.+||+|||+||||+ |..|+.
T Consensus 138 ~~n~~~ll~~g~~~~~~l~~~I~~Ak~~I~i-------~~yi~~~--d~~g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~- 206 (509)
T PRK12452 138 DRTTTKLLTNGDQTFSEILQAIEQAKHHIHI-------QYYIYKS--DEIGTKVRDALIKKAKDGVIVRFLY-DGLGSN- 206 (509)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhCCEEEE-------EEEEEeC--CcHHHHHHHHHHHHHHCCCEEEEEE-ECCCCC-
Confidence 6899999999999999999999999999999 8999986 7889999999999999999999984 776653
Q ss_pred hcchhhhHHHhhccCCCeEEEEc-CCCcc--cCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCC
Q 001322 441 KINSVYSKRKLLSIHENVRVLRY-PDHFA--SGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPG 517 (1100)
Q Consensus 441 ~~~s~~~k~~L~~l~~nI~V~r~-p~~~~--~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG 517 (1100)
...+.+. +.|. .+||+|..| |...+ ....++|||||++||||++||+||+|+.
T Consensus 207 ~~~~~~~-~~L~--~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg~ia~~GG~Ni~--------------------- 262 (509)
T PRK12452 207 TLRRRFL-QPMK--EAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGEIGFTGGLNVG--------------------- 262 (509)
T ss_pred CCCHHHH-HHHH--hCCeEEEEecCcccccccccccCCCCCeEEEEcCCEEEeCCcccc---------------------
Confidence 2233332 2343 479999877 43221 2346899999999999999999999994
Q ss_pred CCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccccc
Q 001322 518 KDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVI 597 (1100)
Q Consensus 518 ~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~ 597 (1100)
++|.+. ....++|||+|++++||+|.+++.+|.++|+++++...+ + +
T Consensus 263 d~y~~~-------------------~~~~~~WrD~~~~i~Gp~V~~l~~~F~~dW~~~~~~~~~---------~-~---- 309 (509)
T PRK12452 263 DEYLGR-------------------SKKFPVWRDSHLKVEGKALYKLQAIFLEDWLYASSGLNT---------Y-S---- 309 (509)
T ss_pred hhhcCC-------------------CCCCCCceEEEEEEECHHHHHHHHHHHHHHHHhhCcccc---------c-c----
Confidence 456542 123468999999999999999999999999987532100 0 0
Q ss_pred ccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccccccccc
Q 001322 598 PHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIE 677 (1100)
Q Consensus 598 ~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1100)
+.. ....+ ..|+.
T Consensus 310 -----------------------------~~~---~~~~~-~~~~~---------------------------------- 322 (509)
T PRK12452 310 -----------------------------WDP---FMNRQ-YFPGK---------------------------------- 322 (509)
T ss_pred -----------------------------ccc---ccchh-cCCCc----------------------------------
Confidence 000 00000 00000
Q ss_pred ccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEecCCcccCC
Q 001322 678 PVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSAG 757 (1100)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS~G 757 (1100)
. ...+.+.+|++.| |
T Consensus 323 ----------------------------------------------------------~-~~~~~~~~q~~~s------g 337 (509)
T PRK12452 323 ----------------------------------------------------------E-ISNAEGAVQIVAS------G 337 (509)
T ss_pred ----------------------------------------------------------c-ccCCCeEEEEEeC------C
Confidence 0 0012357899988 5
Q ss_pred CcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCC
Q 001322 758 TSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDD 837 (1100)
Q Consensus 758 ~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~ 837 (1100)
+...+.+|.++|+++|.+||++|||++|||+++. .+.+||..+ ++ +||+|+|++|..|+
T Consensus 338 p~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~--------~l~~aL~~A----a~--rGV~Vrii~p~~~D------- 396 (509)
T PRK12452 338 PSSDDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ--------ETLTLLRLS----AI--SGIDVRILYPGKSD------- 396 (509)
T ss_pred CCchhHHHHHHHHHHHHHhhhEEEEECCccCCCH--------HHHHHHHHH----HH--cCCEEEEEcCCCCC-------
Confidence 5556779999999999999999999999999972 577777644 33 49999999997654
Q ss_pred CCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEEcc
Q 001322 838 GGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGS 917 (1100)
Q Consensus 838 ~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGS 917 (1100)
...++|. ..++++.|.+ .|++++.| .+ .++|+|+|||||++++|||
T Consensus 397 ------~~~~~~a-------~~~~~~~L~~-aGv~I~~y-------------~~-------~~lHaK~~ivD~~~a~vGS 442 (509)
T PRK12452 397 ------SIISDQA-------SQSYFTPLLK-AGASIYSY-------------KD-------GFMHAKIVLVDDKIATIGT 442 (509)
T ss_pred ------hHHHHHH-------HHHHHHHHHH-cCCEEEEe-------------cC-------CCeeeeEEEECCCEEEEeC
Confidence 1233333 3457889998 59988766 12 3899999999999999999
Q ss_pred cccCcCccCCCCCcceeEEEEcCcc
Q 001322 918 ANINDRSLLGSRDSEIGVLIEDKES 942 (1100)
Q Consensus 918 ANiN~RSm~G~~DsEi~v~I~d~~~ 942 (1100)
+|+|.||+ ..|.|+++++.|++.
T Consensus 443 ~Nld~RS~--~~n~E~~~~i~~~~~ 465 (509)
T PRK12452 443 ANMDVRSF--ELNYEIISVLYESET 465 (509)
T ss_pred cccCHhHh--hhhhhccEEEECHHH
Confidence 99999999 489999999999763
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=7.8e-47 Score=448.76 Aligned_cols=320 Identities=26% Similarity=0.457 Sum_probs=246.7
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHh
Q 001322 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL 440 (1100)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l 440 (1100)
.||.+++|+||+++|++++++|++||++|+| ++|++++ |..+.++.++|.+||+|||+|||| +|..++..
T Consensus 114 ~~n~v~ll~~g~~~~~~l~~~I~~Ak~~I~l-------~~yi~~~--d~~g~~i~~aL~~aa~rGV~VriL-~D~~Gs~~ 183 (483)
T PRK01642 114 KGNQLRLLTNGDETFQAIIRDIELARHYILM-------EFYIWRP--DGLGDQVAEALIAAAKRGVRVRLL-YDSIGSFA 183 (483)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHhhcEEEE-------EEEEEcc--CCcHHHHHHHHHHHHHCCCEEEEE-EECCCCCC
Confidence 6999999999999999999999999999999 8999986 778999999999999999999998 57665431
Q ss_pred hcchhhhHHHhhccCCCeEEEEc-CCC-c--ccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCC
Q 001322 441 KINSVYSKRKLLSIHENVRVLRY-PDH-F--ASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWP 516 (1100)
Q Consensus 441 ~~~s~~~k~~L~~l~~nI~V~r~-p~~-~--~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~p 516 (1100)
..++.+. +.|. .+||+|..+ |.. + ....+++|+|+|++||||++||+||+|++
T Consensus 184 ~~~~~~~-~~L~--~~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VIDg~ia~~Gg~Ni~-------------------- 240 (483)
T PRK01642 184 FFRSPYP-EELR--NAGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVIDGYIAYTGSMNVV-------------------- 240 (483)
T ss_pred CCcHHHH-HHHH--HCCCEEEEecCCCcccccccccccccCceEEEEcCCEEEeCCcccC--------------------
Confidence 1122232 3344 479999887 542 1 22356789999999999999999999995
Q ss_pred CC-CCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccc
Q 001322 517 GK-DYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQM 595 (1100)
Q Consensus 517 G~-dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~ 595 (1100)
+ +|.+. ....++|||++++++||+|.+++..|.++|+.++++... +
T Consensus 241 -d~~y~~~-------------------~~~~~~w~D~~~~i~Gp~v~~l~~~F~~dW~~~~~~~~~---------~---- 287 (483)
T PRK01642 241 -DPEYFKQ-------------------DPGVGQWRDTHVRIEGPVVTALQLIFAEDWEWETGERIL---------P---- 287 (483)
T ss_pred -CHHHhCC-------------------CCCCCCcEEEEEEEEcHHHHHHHHHHHHHHHHHhCcccC---------C----
Confidence 3 45431 123458999999999999999999999999987543100 0
Q ss_pred ccccccCCcchhhhcccccccccccccccccccccCccCCCCC-CCCCCCccccCCCCCCcCCCCCcccccccccccccc
Q 001322 596 VIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPL-LLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKA 674 (1100)
Q Consensus 596 ~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1100)
..|. ..++.
T Consensus 288 ---------------------------------------~~~~~~~~~~------------------------------- 297 (483)
T PRK01642 288 ---------------------------------------PPPDVLIMPF------------------------------- 297 (483)
T ss_pred ---------------------------------------CCcccccCCc-------------------------------
Confidence 0000 00000
Q ss_pred cccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEecCCcc
Q 001322 675 KIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQW 754 (1100)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~W 754 (1100)
...+.+.||++.|
T Consensus 298 ---------------------------------------------------------------~~~~~~~~qi~~s---- 310 (483)
T PRK01642 298 ---------------------------------------------------------------EEASGHTVQVIAS---- 310 (483)
T ss_pred ---------------------------------------------------------------cCCCCceEEEEeC----
Confidence 0012357899987
Q ss_pred cCCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCC
Q 001322 755 SAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGG 834 (1100)
Q Consensus 755 S~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~ 834 (1100)
|+...+..++++|+++|.+|+++|||++|||+++. .|.+||..++. +||+|+||+|..++
T Consensus 311 --gP~~~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~--------~i~~aL~~Aa~------rGV~Vril~p~~~d---- 370 (483)
T PRK01642 311 --GPGDPEETIHQFLLTAIYSARERLWITTPYFVPDE--------DLLAALKTAAL------RGVDVRIIIPSKND---- 370 (483)
T ss_pred --CCCChhhHHHHHHHHHHHHhccEEEEEcCCcCCCH--------HHHHHHHHHHH------cCCEEEEEeCCCCC----
Confidence 66666789999999999999999999999999863 67778765443 49999999997654
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEE
Q 001322 835 VDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIAL 914 (1100)
Q Consensus 835 ~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~i 914 (1100)
..++.|. ..+++..|.+ .|+++++| .+ .++|||+|||||++++
T Consensus 371 ---------~~~~~~~-------~~~~~~~L~~-~Gv~I~~y-------------~~-------~~~HaK~~ivD~~~~~ 413 (483)
T PRK01642 371 ---------SLLVFWA-------SRAFFTELLE-AGVKIYRY-------------EG-------GLLHTKSVLVDDELAL 413 (483)
T ss_pred ---------cHHHHHH-------HHHHHHHHHH-cCCEEEEe-------------CC-------CceEeEEEEECCCEEE
Confidence 1233343 2356788888 59888765 12 2899999999999999
Q ss_pred EcccccCcCccCCCCCcceeEEEEcCcc
Q 001322 915 IGSANINDRSLLGSRDSEIGVLIEDKES 942 (1100)
Q Consensus 915 IGSANiN~RSm~G~~DsEi~v~I~d~~~ 942 (1100)
|||+|+|.||+ ..|.|++++|+|+++
T Consensus 414 vGS~N~d~rS~--~~N~E~~~~i~d~~~ 439 (483)
T PRK01642 414 VGTVNLDMRSF--WLNFEITLVIDDTGF 439 (483)
T ss_pred eeCCcCCHhHH--hhhhcceEEEECHHH
Confidence 99999999999 499999999999874
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=8.9e-45 Score=421.68 Aligned_cols=318 Identities=21% Similarity=0.360 Sum_probs=236.9
Q ss_pred CCCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhH
Q 001322 360 DDGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALA 439 (1100)
Q Consensus 360 ~~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~ 439 (1100)
+.||.+++|.||+++|.+++++|++||++|+| ++|++.+ |..+..|.++|.+||+|||+|+||+ |..++.
T Consensus 5 ~~gN~v~ll~~G~e~~~~l~~~I~~Ak~~I~i-------~~yi~~~--d~~g~~l~~aL~~aa~rGV~Vril~-D~~gs~ 74 (411)
T PRK11263 5 REGNRIQLLENGEQYYPRVFEAIAAAQEEILL-------ETFILFE--DKVGKQLHAALLAAAQRGVKVEVLV-DGYGSP 74 (411)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhCCEEEE-------EEEEEec--CchHHHHHHHHHHHHHCCCEEEEEE-ECCCCC
Confidence 37999999999999999999999999999999 7788875 6788999999999999999999986 555432
Q ss_pred hhcchhhhHHHhhccCCCeEEEEc-CCC-ccc--CcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCC
Q 001322 440 LKINSVYSKRKLLSIHENVRVLRY-PDH-FAS--GVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIW 515 (1100)
Q Consensus 440 l~~~s~~~k~~L~~l~~nI~V~r~-p~~-~~~--~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~ 515 (1100)
.+...+. ..|. .+||+|..| |.. +.. ..++.++|+|++|||+++|||||+|++
T Consensus 75 -~~~~~~~-~~L~--~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~~a~vGg~N~~------------------- 131 (411)
T PRK11263 75 -DLSDEFV-NELT--AAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGRIAFVGGINYS------------------- 131 (411)
T ss_pred -CCCHHHH-HHHH--HCCeEEEEeCCcccccccccccccCCcceEEEEcCCEEEEcCeEch-------------------
Confidence 1222232 2333 478999876 432 111 123459999999999999999999995
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccc
Q 001322 516 PGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQM 595 (1100)
Q Consensus 516 pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~ 595 (1100)
++|.+. .+..+|+|++++|+||+|.+++..|.+.|....... .+
T Consensus 132 --~~~~~~--------------------~g~~~w~D~~v~i~Gp~V~~l~~~f~~~w~~~~~~~-------~~------- 175 (411)
T PRK11263 132 --ADHLSD--------------------YGPEAKQDYAVEVEGPVVADIHQFELEALPGQSAAR-------RW------- 175 (411)
T ss_pred --Hhhccc--------------------cCCCCceEEEEEEECHHHHHHHHHHHHHHhhcccch-------hh-------
Confidence 334321 122479999999999999999999999996321000 00
Q ss_pred ccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccccccc
Q 001322 596 VIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAK 675 (1100)
Q Consensus 596 ~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1100)
+. ..+ .+.
T Consensus 176 -------------------------------~~------~~~--~~~--------------------------------- 183 (411)
T PRK11263 176 -------------------------------WR------RHH--RAE--------------------------------- 183 (411)
T ss_pred -------------------------------hc------ccc--cCc---------------------------------
Confidence 00 000 000
Q ss_pred ccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEecCCccc
Q 001322 676 IEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWS 755 (1100)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS 755 (1100)
.....+...+|++-+
T Consensus 184 ------------------------------------------------------------~~~~~g~~~~~~v~~----- 198 (411)
T PRK11263 184 ------------------------------------------------------------ENRQPGEAQALLVWR----- 198 (411)
T ss_pred ------------------------------------------------------------ccCCCCCeEEEEEEC-----
Confidence 000113346788865
Q ss_pred CCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCC
Q 001322 756 AGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGV 835 (1100)
Q Consensus 756 ~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~ 835 (1100)
|+......|+.+|+.+|.+|++.|||+|+||+|+. .|.+||..+. + +||+|.||+|..|+
T Consensus 199 -~p~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~--------~l~~aL~~Aa----~--RGV~V~ii~~~~~d----- 258 (411)
T PRK11263 199 -DNEEHRDDIERHYLKALRQARREVIIANAYFFPGY--------RLLRALRNAA----R--RGVRVRLILQGEPD----- 258 (411)
T ss_pred -CCcchHHHHHHHHHHHHHHhceEEEEEecCcCCCH--------HHHHHHHHHH----H--CCCEEEEEeCCCCC-----
Confidence 44445678999999999999999999999999963 5777776543 3 49999999997654
Q ss_pred CCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEE
Q 001322 836 DDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALI 915 (1100)
Q Consensus 836 ~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iI 915 (1100)
..++.+. ...++..|.+ .|+++++| .+ .++|+|+|||||++++|
T Consensus 259 --------~~~~~~a-------~~~~~~~Ll~-~Gv~I~~y-------------~~-------~~lHaK~~viD~~~~~v 302 (411)
T PRK11263 259 --------MPIVRVG-------ARLLYNYLLK-GGVQIYEY-------------CR-------RPLHGKVALMDDHWATV 302 (411)
T ss_pred --------cHHHHHH-------HHHHHHHHHH-CCCEEEEe-------------cC-------CCceeEEEEECCCEEEE
Confidence 1233333 3356888998 49988776 12 28999999999999999
Q ss_pred cccccCcCccCCCCCcceeEEEEcCc
Q 001322 916 GSANINDRSLLGSRDSEIGVLIEDKE 941 (1100)
Q Consensus 916 GSANiN~RSm~G~~DsEi~v~I~d~~ 941 (1100)
||+|||.||| ..|.|++++|+|++
T Consensus 303 GS~Nld~rS~--~lN~E~~~~i~d~~ 326 (411)
T PRK11263 303 GSSNLDPLSL--SLNLEANLIIRDRA 326 (411)
T ss_pred eCCcCCHHHh--hhhhhcCEEEeCHH
Confidence 9999999999 59999999999987
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=7.5e-37 Score=358.64 Aligned_cols=331 Identities=29% Similarity=0.479 Sum_probs=237.7
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHh
Q 001322 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL 440 (1100)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l 440 (1100)
.++.++++.+|.++|.+++++|++|+++|+| ++|++.+ +..+.++.++|.++|++||+||+++ |..+...
T Consensus 58 ~~~~~~~l~~~~~~~~~~~~~i~~a~~~I~~-------~~~i~~~--d~~~~~i~~~l~~~a~~gv~vr~l~-D~~~~~~ 127 (438)
T COG1502 58 SGNGVDLLKDGADAFAALIELIEAAKKSIYL-------QYYIWQD--DELGREILDALIEAAKRGVEVRLLL-DDIGSTR 127 (438)
T ss_pred CCCceEEecCHHHHHHHHHHHHHHHhhEEEE-------EEEEEeC--ChhHHHHHHHHHHHHHcCCEEEEEE-ecCCCcc
Confidence 5789999999999999999999999999999 8899986 6788999999999999999999986 6555422
Q ss_pred hcchhhhHHHhhccCCCe-EEEEc-CCCc---ccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCC
Q 001322 441 KINSVYSKRKLLSIHENV-RVLRY-PDHF---ASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIW 515 (1100)
Q Consensus 441 ~~~s~~~k~~L~~l~~nI-~V~r~-p~~~---~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~ 515 (1100)
.....+. ..+ .++++ .+..+ |... .....+.++|+|++|||+.++|+||.|+
T Consensus 128 ~~~~~~~-~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~r~H~K~~viD~~i~~vGg~N~-------------------- 184 (438)
T COG1502 128 GLLKSLL-ALL--KRAGIEEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGKVAFVGGANI-------------------- 184 (438)
T ss_pred cccHHHH-HHH--hcCCceEEEecCCcccccchhhhhhccccceEEEEcCCEEEecCccc--------------------
Confidence 1111111 122 25777 54444 4321 2234678999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCcccc
Q 001322 516 PGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQM 595 (1100)
Q Consensus 516 pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~ 595 (1100)
|++|.+.. ...++|+|+++++.||+|.+++.+|.++|+.......+... +
T Consensus 185 -~d~y~~~~-------------------~~~~~~~D~~~~~~g~~v~~l~~~f~~~w~~~~~~~~~~~~------~---- 234 (438)
T COG1502 185 -GDEYFHKD-------------------KGLGYWRDLHVRITGPAVADLARLFIQDWNLESGSSKPLLA------L---- 234 (438)
T ss_pred -chhhhccC-------------------cCcccceeeeEEEECHHHHHHHHHHHHHhhhccCcCccccc------c----
Confidence 45665421 02348999999999999999999999999987432210000 0
Q ss_pred ccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCccccccccccccccc
Q 001322 596 VIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAK 675 (1100)
Q Consensus 596 ~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1100)
. ++...
T Consensus 235 ----------------------------------------~---~~~~~------------------------------- 240 (438)
T COG1502 235 ----------------------------------------V---RPPLQ------------------------------- 240 (438)
T ss_pred ----------------------------------------c---ccccc-------------------------------
Confidence 0 00000
Q ss_pred ccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEecCCccc
Q 001322 676 IEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWS 755 (1100)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS 755 (1100)
.. ........+.+|++.+.|.+.
T Consensus 241 ------~~---------------------------------------------------~~~~~~~~~~~~~~~~~P~~~ 263 (438)
T COG1502 241 ------SL---------------------------------------------------SLLPVGRGSTVQVLSSGPDKG 263 (438)
T ss_pred ------cc---------------------------------------------------cccccccCcceEEEecCCccc
Confidence 00 000001122379999877663
Q ss_pred CCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCC
Q 001322 756 AGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGV 835 (1100)
Q Consensus 756 ~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~ 835 (1100)
.+.. +..+...|+.+|.+|+++|+|++|||+++. .+.+||..+.. +|++|.|++|..- .
T Consensus 264 ~~~~--~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~--------~~~~al~~a~~------~Gv~V~ii~~~~~-----~ 322 (438)
T COG1502 264 LGSE--LIELNRLLLKAINSARESILIATPYFVPDR--------ELLAALKAAAR------RGVDVRIIIPSLG-----A 322 (438)
T ss_pred cchh--hhhHHHHHHHHHHhhceEEEEEcCCcCCCH--------HHHHHHHHHHh------cCCEEEEEeCCCC-----C
Confidence 3322 212569999999999999999999999983 56666664432 4999999999430 0
Q ss_pred CCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEE
Q 001322 836 DDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALI 915 (1100)
Q Consensus 836 ~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iI 915 (1100)
.+ ..+++|.++ ..+..|.+ .|+.+++| .+| .++|+|+|||||++++|
T Consensus 323 ~d------~~~~~~~~~-------~~~~~l~~-~gv~i~~~-------------~~g------~~lH~K~~iiD~~~~~v 369 (438)
T COG1502 323 ND------SAIVHAAYR-------AYLKELLE-AGVKVYEY-------------PGG------AFLHSKVMIIDDRTVLV 369 (438)
T ss_pred CC------hHHHHHHHH-------HHHHHHHH-hCCEEEEe-------------cCC------CcceeeEEEEcCCEEEE
Confidence 11 244444444 45788888 48887655 111 49999999999999999
Q ss_pred cccccCcCccCCCCCcceeEEEEcCc
Q 001322 916 GSANINDRSLLGSRDSEIGVLIEDKE 941 (1100)
Q Consensus 916 GSANiN~RSm~G~~DsEi~v~I~d~~ 941 (1100)
||+|+|.||+ .+|+|++++|+|++
T Consensus 370 GS~N~~~rS~--~lN~E~~~~i~d~~ 393 (438)
T COG1502 370 GSANLDPRSL--RLNFEVGLVIEDPE 393 (438)
T ss_pred eCCcCCHhHH--HHhhhheeEEeCHH
Confidence 9999999999 59999999999985
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=3.7e-33 Score=327.10 Aligned_cols=356 Identities=18% Similarity=0.175 Sum_probs=220.8
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhh--CCcEEEEEEechh--
Q 001322 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAK--QGVQIYILLYKEV-- 436 (1100)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~--rGVkVrILl~d~~-- 436 (1100)
.+|.+++|.+|.++|++|+++|++||++|+| +.|++.. |..+..|.++|.+|++ +||+|+||+ |..
T Consensus 23 ~~~~v~~l~~~~~f~~~Ll~~I~~Ak~~I~l-------~~y~~~~--D~~g~~il~AL~~a~~~~~gv~VrvLv-D~~Ra 92 (451)
T PRK09428 23 SPDDVETLYSPADFRETLLEKIASAKKRIYI-------VALYLED--DEAGREILDALYQAKQQNPELDIKVLV-DWHRA 92 (451)
T ss_pred CcccEEEEcCHHHHHHHHHHHHHhcCCeEEE-------EEEEecC--CchHHHHHHHHHHHHhcCCCcEEEEEE-Ecccc
Confidence 4789999999999999999999999999999 6788875 7889999999999854 899999987 542
Q ss_pred -----hhHh-hcchhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCC
Q 001322 437 -----ALAL-KINSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDN 510 (1100)
Q Consensus 437 -----~~~l-~~~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~ 510 (1100)
|... ..+..+. ..+.+.++|++|..|.........+.++|+|++|||++++|+| +||.
T Consensus 93 ~Rg~iG~~~~~~~~~~~-~~l~~~~~gv~v~~f~~p~~~~e~~gr~HrKi~IiD~~v~ysG-aNi~-------------- 156 (451)
T PRK09428 93 QRGLIGAAASNTNADWY-CEMAQEYPGVDIPVYGVPVNTREALGVLHLKGFIIDDTVLYSG-ASLN-------------- 156 (451)
T ss_pred cccccccCCCCcCHHHH-HHHHHhCCCceEEEcCCccccchhhhhceeeEEEECCCEEEec-cccc--------------
Confidence 2210 1222222 3454445688887762211122456789999999999999997 7993
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhhcCCCCCCCCccccC
Q 001322 511 PPLIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLM 590 (1100)
Q Consensus 511 ~~~~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~ 590 (1100)
++|... .++ ...|..++|+||++.++...|+++|......-.. -..+. .
T Consensus 157 -------d~Yl~~--------------------~~~-~r~Dry~~i~g~~la~~~~~fi~~~~~~~~~v~~--l~~~~-~ 205 (451)
T PRK09428 157 -------NVYLHQ--------------------HDK-YRYDRYHLIRNAELADSMVNFIQQNLLNSPAVNR--LDQPN-R 205 (451)
T ss_pred -------HHHhcC--------------------Ccc-cCcceEEEEeCchHHHHHHHHHHHHhhccCcccc--ccccc-c
Confidence 456531 011 1127788899999999999999999765321000 00000 0
Q ss_pred CccccccccccCCcchhhhcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccc
Q 001322 591 PQHQMVIPHYMGRSREVEVESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFR 670 (1100)
Q Consensus 591 p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1100)
|.. +++. ...| .+
T Consensus 206 ~~~-----------~~~~-----------~~~~--------------------------------------------~~- 218 (451)
T PRK09428 206 PKT-----------KEIK-----------NDIR--------------------------------------------QF- 218 (451)
T ss_pred ccc-----------hhhH-----------HHHH--------------------------------------------HH-
Confidence 000 0000 0000 00
Q ss_pred cccccccccccCCCCCCcccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEec
Q 001322 671 YQKAKIEPVVTDMPMKGFVDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRS 750 (1100)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS 750 (1100)
+.. .... .++. . ...+...+++...
T Consensus 219 -~~~-----l~~~-----------------------------------------~~~~------~--~~~~~~~~~v~p~ 243 (451)
T PRK09428 219 -RQR-----LRDA-----------------------------------------AYQF------Q--GQANNDELSVTPL 243 (451)
T ss_pred -HHH-----Hhhh-----------------------------------------ccCc------c--cccCCCCeEEeee
Confidence 000 0000 0000 0 0001123455443
Q ss_pred CCcccCCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCC-
Q 001322 751 VSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLP- 829 (1100)
Q Consensus 751 ~~~WS~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P- 829 (1100)
++ .|+. ..+..+++.+|..|++.|+|.|+||+++. .+.+||..++ + +|++|.||+|...
T Consensus 244 ~g---~g~~---~~l~~~~~~li~~A~~~i~I~TPYF~p~~--------~l~~~L~~a~----~--rGv~V~Ii~~~~~a 303 (451)
T PRK09428 244 VG---LGKK---NLLNKTIFHLMASAEQKLTICTPYFNLPA--------ILVRNIIRLL----R--RGKKVEIIVGDKTA 303 (451)
T ss_pred ec---cCCc---hHHHHHHHHHHhccCcEEEEEeCCcCCCH--------HHHHHHHHHH----h--cCCcEEEEcCCccc
Confidence 22 2432 57899999999999999999999999973 4666665433 2 4899999999652
Q ss_pred -CCCCCCCCCCchh-HHHHHHHHHHHHhhhhHHHHHHHHHhcC---CCcccccccccccccccccCCCCccccceeeeee
Q 001322 830 -GFQGGVDDGGAAS-VRAIMHWQYRTICRGQNSILHNLYALLG---PKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSK 904 (1100)
Q Consensus 830 -~F~G~~~~~~~~s-~r~im~~qyrtI~rG~~si~~~L~~~~G---~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSK 904 (1100)
+|-+.-+ ..- ..+...+-|..+-|.-...+..|.++ | +.+++| .+ -..|+|
T Consensus 304 ndfy~~~d---~~~~~~~~~py~ye~~lr~f~~~~~~li~~-G~l~v~i~~~-------------~~-------~~~HaK 359 (451)
T PRK09428 304 NDFYIPPD---EPFKIIGALPYLYEINLRRFAKRLQYYIDN-GQLNVRLWKD-------------GD-------NSYHLK 359 (451)
T ss_pred ccCcCCCc---cHHHHhhhhHHHHHHhhhhhHHHhhhhhhc-CcceEEEEec-------------CC-------CcceEE
Confidence 2211111 001 11112223333222212223334442 4 333322 12 389999
Q ss_pred EEEEeCcEEEEcccccCcCccCCCCCcceeEEEEcCc
Q 001322 905 VMIIDDSIALIGSANINDRSLLGSRDSEIGVLIEDKE 941 (1100)
Q Consensus 905 lmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~ 941 (1100)
.|+|||++++|||+|+|.||+ .+|.|++++|.|++
T Consensus 360 ~i~vD~~~~~iGS~Nld~RS~--~ln~E~~l~i~d~~ 394 (451)
T PRK09428 360 GIWVDDRWMLLTGNNLNPRAW--RLDLENALLIHDPK 394 (451)
T ss_pred EEEEeCCEEEEcCCCCChhHh--hhcccceEEEECCh
Confidence 999999999999999999999 59999999999986
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=5e-32 Score=316.40 Aligned_cols=329 Identities=16% Similarity=0.174 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCC--CCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhhHHH
Q 001322 373 AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPF--HNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRK 450 (1100)
Q Consensus 373 ~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~--~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~ 450 (1100)
..|+++.++|.+||++|+|+. +|+..+. ....+.+|.++|.+||+|||+||||+ |..+. ...+. ..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s------~yf~~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~----~~~~~-~~ 93 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISS------FYWSLSDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNK----PLKDV-EL 93 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEe------EEEecCccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCC----chhhH-HH
Confidence 679999999999999999963 4444221 11348899999999999999999986 53321 12222 33
Q ss_pred hhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 451 LLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNS 530 (1100)
Q Consensus 451 L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~ 530 (1100)
|. .+||+|..+.... ....++|+|++|||++++|+||+|+. .|+ ..
T Consensus 94 L~--~aGv~v~~~~~~~---~~~~~~HrK~~VIDg~~~~iGS~Nid-~rs--------------------l~-------- 139 (424)
T PHA02820 94 LQ--MAGVEVRYIDITN---ILGGVLHTKFWISDNTHIYLGSANMD-WRS--------------------LT-------- 139 (424)
T ss_pred HH--hCCCEEEEEecCC---CCcccceeeEEEECCCEEEEeCCcCC-hhh--------------------hh--------
Confidence 44 3789988764211 12467999999999999999999994 122 11
Q ss_pred ccccccccccCCCCCCCCeEEEEEEE--EChHHHHHHHHHHHHHHhhhcCCCCCCCCccccCCccccccccccCCcchhh
Q 001322 531 WEDTMRDELDRGKYPRMPWHDIHCAL--WGPPCRDVARHFVQRWNYAKRNKAPNEETIPLLMPQHQMVIPHYMGRSREVE 608 (1100)
Q Consensus 531 ~~~~~~~~ldr~~~~r~pWhDv~~~v--~Gpaa~dl~~~F~qrWn~~~~~k~~~~~~~~~l~p~~~~~~~~~~g~~~~~~ 608 (1100)
..+|+++.+ +||+|.+|++.|.++|+..+.. .+... +.
T Consensus 140 -----------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~-~~~~~------~~---------------- 179 (424)
T PHA02820 140 -----------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNN-LPYNW------KN---------------- 179 (424)
T ss_pred -----------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccC-CCCcc------cc----------------
Confidence 123677777 7999999999999999987421 10000 00
Q ss_pred hcccccccccccccccccccccCccCCCCCCCCCCCccccCCCCCCcCCCCCcccccccccccccccccccccCCCCCCc
Q 001322 609 VESKNVEDNSKSIKRQDSFTFRSSLQDIPLLLPQEPEVLDDSSRGLIPNGLDYTTTKSASFRYQKAKIEPVVTDMPMKGF 688 (1100)
Q Consensus 609 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~p~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1100)
..|...++. .|+
T Consensus 180 --------------------------~~~~~~~~~---------------------------------------~p~--- 191 (424)
T PHA02820 180 --------------------------FYPLYYNTD---------------------------------------HPL--- 191 (424)
T ss_pred --------------------------ccccccccC---------------------------------------CCc---
Confidence 000000000 000
Q ss_pred ccCCCCCCcccccccccccCCCCCCCchhhhhhcccCCccCCCCccCCCCCCCCceEEEEecCCcccCCCcccHHHHHHH
Q 001322 689 VDDRDSPHHHLKTSLDVMTLPGTKSSDIEWWETQERGDQVGSTDETGQVGPRASCRCQIIRSVSQWSAGTSQLEESIHCA 768 (1100)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vQilRS~~~WS~G~~~~E~sI~~a 768 (1100)
.....+....|++-|.+.-..+.. .....++
T Consensus 192 -----------------------------------------------~~~~~~~~~~~~~sssP~~~~~~~--r~~~~~~ 222 (424)
T PHA02820 192 -----------------------------------------------SLNVSGVPHSVFIASAPQQLCTME--RTNDLTA 222 (424)
T ss_pred -----------------------------------------------ccccCCccceEEEeCCChhhcCCC--CCchHHH
Confidence 000011112345555443211111 1246899
Q ss_pred HHHHHHhcccEEEEEeeecccCC---CCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhHHH
Q 001322 769 YCSLIEKAEHFIYIENQFFISGL---SGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRA 845 (1100)
Q Consensus 769 yl~aI~~A~hfIYIEnQyFis~~---~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~ 845 (1100)
|+.+|.+|+++|||+++||+|.. .....-+..|.+||.+++ ..+||+|+|++|.+++- . .
T Consensus 223 ~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA-----~~RGV~VriLvp~~~d~-----~-------~ 285 (424)
T PHA02820 223 LLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAA-----IDRKVSVKLLISCWQRS-----S-------F 285 (424)
T ss_pred HHHHHHHHhhEEEEEEccccceeeccCCcccchHHHHHHHHHHH-----HhCCCEEEEEEeccCCC-----C-------c
Confidence 99999999999999999999972 111112235666765322 13599999999987541 0 1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEEcccccCcCcc
Q 001322 846 IMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANINDRSL 925 (1100)
Q Consensus 846 im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~RSm 925 (1100)
++ |.+ ...++.|.+ .|+++ ++++|....+. +.+....++|||+||||| ++.|||||||.|||
T Consensus 286 ~~-~a~-------~~~l~~L~~-~gv~I--~Vk~y~~p~~~------~~~~~~~f~HaK~~vvD~-~a~IGTsN~D~rsf 347 (424)
T PHA02820 286 IM-RNF-------LRSIAMLKS-KNINI--EVKLFIVPDAD------PPIPYSRVNHAKYMVTDK-TAYIGTSNWTGNYF 347 (424)
T ss_pred cH-HHH-------HHHHHHHhc-cCceE--EEEEEEcCccc------ccCCcceeeeeeEEEEcc-cEEEECCcCCHHHH
Confidence 11 111 124566776 47765 34444221111 111223599999999997 59999999999999
Q ss_pred CCCCCcceeEEEEcCc
Q 001322 926 LGSRDSEIGVLIEDKE 941 (1100)
Q Consensus 926 ~G~~DsEi~v~I~d~~ 941 (1100)
. .+.|++++++|++
T Consensus 348 ~--~n~ev~~~i~~~~ 361 (424)
T PHA02820 348 T--DTCGVSINITPDD 361 (424)
T ss_pred h--ccCcEEEEEecCC
Confidence 4 9999999999874
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=5.8e-32 Score=311.64 Aligned_cols=138 Identities=20% Similarity=0.272 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEE--EcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhhHHH
Q 001322 373 AAFEAIASSIEDAKSEIFICGWWLCPELYL--RRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRK 450 (1100)
Q Consensus 373 ~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL--~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~ 450 (1100)
..|+++.++|++||++|+| ++|+ +++ +..+.+|.++|++||+|||+||||+ |..+ ...+ .+.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i-------~~yi~~~~~--d~~g~~i~~aL~~aa~rGV~Vril~-D~~~-----~~~~-~~~ 94 (369)
T PHA03003 31 STYECFDEIISQAKKYIYI-------ASFCCNLRS--TPEGRLILDKLKEAAESGVKVTILV-DEQS-----GDKD-EEE 94 (369)
T ss_pred CHHHHHHHHHHhhhhEEEE-------EEEEecccC--CchHHHHHHHHHHhccCCCeEEEEe-cCCC-----CCcc-HHH
Confidence 6899999999999999999 8898 554 7889999999999999999999985 6542 1222 245
Q ss_pred hhccCCCeEEEEcCC-CcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 451 LLSIHENVRVLRYPD-HFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPN 529 (1100)
Q Consensus 451 L~~l~~nI~V~r~p~-~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~ 529 (1100)
|.+ +||+|..+.. .+.. .+.+|.|++||||++||+||+|+. ++|.+.
T Consensus 95 L~~--~Gv~v~~~~~~~~~~---~~~~~~k~~IiDg~~~y~Gg~Ni~---------------------~~~~~~------ 142 (369)
T PHA03003 95 LQS--SNINYIKVDIGKLNN---VGVLLGSFWVSDDRRCYIGNASLT---------------------GGSIST------ 142 (369)
T ss_pred HHH--cCCEEEEEeccccCC---CCceeeeEEEEcCcEEEEecCccC---------------------CcccCc------
Confidence 553 5888866532 1110 124588999999999999999994 344431
Q ss_pred CccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhhh
Q 001322 530 SWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYAK 576 (1100)
Q Consensus 530 ~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~~ 576 (1100)
....+.|+|. ||+|.+|++.|.+.|+.++
T Consensus 143 -------------~~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~ 171 (369)
T PHA03003 143 -------------IKTLGVYSTY-----PPLATDLRRRFDTFKAFNK 171 (369)
T ss_pred -------------cccceeEecC-----cHHHHHHHHHHHHHHHhcC
Confidence 1123479994 9999999999999999774
No 13
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.94 E-value=1.3e-26 Score=222.87 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=105.7
Q ss_pred CC-eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001322 43 LP-KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (1100)
Q Consensus 43 ~~-~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~ 121 (1100)
+| +|+|++|||+++++...++++|||||+||+|+|+|||+||||+.||.+|.+ +|.+++.+|++++
T Consensus 2 ~pi~~~V~~~er~~s~s~~~~~~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~-------------~k~~~~~~P~~~~ 68 (130)
T cd07297 2 VPVTAKVENTERYTTGSKVHVCTLYTVRLTHGEFTWTVKKKFKHFQELHRDLYR-------------HKVMLSFLPLGRF 68 (130)
T ss_pred CceEEEEEEEEEeecccccccceeEEEEEecCceEEEEEehhhhHHHHHHHHHH-------------HHHhhhcCCchhh
Confidence 46 899999999999988888899999999999999999999999999998875 7777776787765
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
+..++ ......+++||+ ||+....+ ++.+++|+ ++||+||+.||++++|+|++++.+|||||
T Consensus 69 ~~~r~-----------~~~~~~~~~mP~---LP~~~~~~--~~~~~sr~-kqLE~YLn~LL~~~~YRn~~atleFLeVS 130 (130)
T cd07297 69 AIQHR-----------QQLEGLTEEMPS---LPGTDREA--SRRTASKP-KYLENYLNNLLENSFYRNYHAMMEFLAVS 130 (130)
T ss_pred hhhhc-----------cccccccCcCCC---CCCCCchh--hhhhhhHH-HHHHHHHHHHhcchhhcCChhheeeeecC
Confidence 44322 112345688998 88754433 55677665 69999999999999999999999999998
No 14
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.87 E-value=4.1e-22 Score=195.72 Aligned_cols=121 Identities=38% Similarity=0.660 Sum_probs=104.3
Q ss_pred ceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCcccc
Q 001322 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (1100)
Q Consensus 213 keg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~ 292 (1100)
|||||+||++++.+|.. ..||+|.++.+|..+|+|||||||+|||+|+++|.+.+|++|||||..|.+..++...+.+
T Consensus 1 keG~i~kr~g~~~~~~~--~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~ 78 (121)
T cd01254 1 KEGYIMKRSGGKRSGSD--DCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISL 78 (121)
T ss_pred CCceEEeCCCCCcCCcc--cccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccc
Confidence 79999999987776522 2245555666677999999999999999999999999999999999999887665555666
Q ss_pred chhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHhc
Q 001322 293 ATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
+.++++.++.++||+|.|++|++.|+|.|++++++|+++|+++
T Consensus 79 ~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 79 AVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 7777778899999999999999999999999999999999874
No 15
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.86 E-value=7.1e-22 Score=194.62 Aligned_cols=129 Identities=26% Similarity=0.400 Sum_probs=99.0
Q ss_pred CC-eEEEeeeeecCCCC--CCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 001322 43 LP-KASIVSVSRPDAGD--ISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMG 119 (1100)
Q Consensus 43 ~~-~v~I~~ver~~s~~--~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~ 119 (1100)
+| +|+|++|||++++. ..+++++|+|+|+||.|+|+|+|+||||+.||.+|.. ++..+ .+|+|
T Consensus 2 ~~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~-------------~~~~~-~~plP 67 (135)
T cd07296 2 CPIKARVLEVERFTSTSDVKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLR-------------YKAFI-RIPIP 67 (135)
T ss_pred CceEEEEEEEEEeeccccccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHh-------------cCCCC-CCCCC
Confidence 46 89999999999987 7888999999999999999999999999999998874 23322 23443
Q ss_pred C--CccccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhh
Q 001322 120 D--HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFL 197 (1100)
Q Consensus 120 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FL 197 (1100)
+ |...++ ....++.+.+|+ ||.......+++.+++|+ ++||+||+.||+++.++|++++++||
T Consensus 68 ~k~~~~~r~-----------~~~~~~~~~~p~---lp~~~~~~v~e~~~~sRr-~~LE~YL~~LL~~~~~Rn~~a~~eFL 132 (135)
T cd07296 68 TRSHTVRRQ-----------TIKRGEPRHMPS---LPRGAEEEAREEQFSSRR-KQLEDYLSKLLKMPMYRNYHATMEFI 132 (135)
T ss_pred cccchhhcc-----------cccccccccccc---CCCCCCccccccchHHHH-HHHHHHHHHHhcChhhcCCHHHHhhe
Confidence 3 111110 111245577888 775544444566677664 79999999999999999999999999
Q ss_pred hcc
Q 001322 198 EAS 200 (1100)
Q Consensus 198 evS 200 (1100)
|||
T Consensus 133 eVs 135 (135)
T cd07296 133 DVS 135 (135)
T ss_pred ecC
Confidence 997
No 16
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.86 E-value=1.9e-21 Score=194.78 Aligned_cols=138 Identities=30% Similarity=0.337 Sum_probs=104.0
Q ss_pred CCCeEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCCCC
Q 001322 42 ELPKASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR-RAFFEEIQEKQEQVKEWLQNLGMGD 120 (1100)
Q Consensus 42 ~~~~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~-~~~~~~~~~~~~~~k~~~~~lp~~~ 120 (1100)
++++|+|+++||++++.+..++++|+||++||+|+|+|+|+|+||..||.+|+. +++++..+..+.....|++..+.
T Consensus 2 ~~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~-- 79 (140)
T cd06895 2 EPIKARITDVERSGTTRHLLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRS-- 79 (140)
T ss_pred CCcEEEEeEEeccCCCCCCCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccc--
Confidence 456999999999998767788999999999999999999999999999999997 35554333333333344321110
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
.++..+.+.+++|+.++.|.++ ......++|+++||+||+.||+++.++++.++++|||||
T Consensus 80 ---------------~~~~~~~~~~~lP~lP~~~~~~----~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 80 ---------------RKPEREKKNRRLPSLPALPDIL----VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred ---------------cccccccccccCCCCCCccccc----cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 0122334567899966655432 244556666789999999999999999999999999998
No 17
>PRK05443 polyphosphate kinase; Provisional
Probab=99.75 E-value=6.3e-17 Score=198.18 Aligned_cols=138 Identities=21% Similarity=0.240 Sum_probs=99.2
Q ss_pred EecHHHHHHHHHHHHHhccc-----EEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhc
Q 001322 368 FVDGKAAFEAIASSIEDAKS-----EIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKI 442 (1100)
Q Consensus 368 lvdG~~~f~al~~aI~~Ak~-----sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~ 442 (1100)
+.-.-+-|..+++.|++|.+ +|.| .+|.+.. ..++.++|.+||++||+|+||+--.....-..
T Consensus 343 Lh~PY~SF~~~~~~i~~Aa~DP~V~~Ik~-------tlYr~~~-----~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~ 410 (691)
T PRK05443 343 LHHPYESFDPVVEFLRQAAADPDVLAIKQ-------TLYRTSK-----DSPIVDALIEAAENGKQVTVLVELKARFDEEA 410 (691)
T ss_pred EECCccCchHHHHHHHHhccCCCeeEEEE-------EEEEecC-----CHHHHHHHHHHHHcCCEEEEEEccCccccHHH
Confidence 33344567888999999998 8998 4666642 48999999999999999999984221100011
Q ss_pred chhhhHHHhhccCCCeEEE-EcCCCcccCcccccCcceEEEEeCc-------EEEEccccCCCCCcCCCCCCCCCCCCCC
Q 001322 443 NSVYSKRKLLSIHENVRVL-RYPDHFASGVYLWSHHEKLVIVDYQ-------ICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (1100)
Q Consensus 443 ~s~~~k~~L~~l~~nI~V~-r~p~~~~~~~~~~~hHqKivVID~~-------vAfvGGiNL~~GRwDt~~H~l~D~~~~~ 514 (1100)
|..|. +.|. .+||+|. .++. +..|.|+++||++ +|++|+.|+.
T Consensus 411 n~~~~-~~L~--~aGv~V~y~~~~--------~k~HaK~~lid~~e~~~~~~~~~iGTgN~n------------------ 461 (691)
T PRK05443 411 NIRWA-RRLE--EAGVHVVYGVVG--------LKTHAKLALVVRREGGGLRRYVHLGTGNYN------------------ 461 (691)
T ss_pred HHHHH-HHHH--HcCCEEEEccCC--------ccceeEEEEEEeecCCceeEEEEEcCCCCC------------------
Confidence 22232 3444 3899984 3342 4689999999999 9999999993
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEE-ChHHHHHHHHHHHHHHh
Q 001322 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALW-GPPCRDVARHFVQRWNY 574 (1100)
Q Consensus 515 ~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~-Gpaa~dl~~~F~qrWn~ 574 (1100)
. .+ -..|.|+++.+. +..+.|+...|...|.+
T Consensus 462 --------~-------------------~s-~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~ 494 (691)
T PRK05443 462 --------P-------------------KT-ARLYTDLSLLTADPEIGEDVTRLFNYLTGY 494 (691)
T ss_pred --------c-------------------ch-hhhccceeEEEeChHHHHHHHHHHHHHhCc
Confidence 0 01 126889999965 56899999999998754
No 18
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.72 E-value=2.3e-16 Score=192.30 Aligned_cols=136 Identities=22% Similarity=0.235 Sum_probs=98.5
Q ss_pred EecHHHHHHHHHHHHHhccc-----EEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEec--hhhhHh
Q 001322 368 FVDGKAAFEAIASSIEDAKS-----EIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYK--EVALAL 440 (1100)
Q Consensus 368 lvdG~~~f~al~~aI~~Ak~-----sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d--~~~~~l 440 (1100)
+.-.-+-|..+++.|++|.+ +|.| .+|.+.. ..++.++|.+||++|++|+|+|-= ..+.
T Consensus 334 Lh~PY~Sf~~v~~~i~~Aa~DP~V~~Ik~-------tlYr~~~-----~s~ii~aL~~Aa~~Gk~V~v~veLkArfde-- 399 (672)
T TIGR03705 334 LHHPYESFDPVVEFLRQAAEDPDVLAIKQ-------TLYRTSK-----DSPIIDALIEAAENGKEVTVVVELKARFDE-- 399 (672)
T ss_pred EECCccCHHHHHHHHHHHhcCCCceEEEE-------EEEEecC-----CcHHHHHHHHHHHcCCEEEEEEEehhhccc--
Confidence 33344567888999999998 8999 5787753 479999999999999999999831 1111
Q ss_pred hcchhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCc-------EEEEccccCCCCCcCCCCCCCCCCCCC
Q 001322 441 KINSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQ-------ICFIGGLDLCFGRYDTFEHKIGDNPPL 513 (1100)
Q Consensus 441 ~~~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~-------vAfvGGiNL~~GRwDt~~H~l~D~~~~ 513 (1100)
..|-.+. +.|. .+|++|.. |...+..|+|+++||.+ .+++|.-|..
T Consensus 400 ~~ni~wa-~~le--~aG~~viy-------g~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n----------------- 452 (672)
T TIGR03705 400 EANIRWA-RRLE--EAGVHVVY-------GVVGLKTHAKLALVVRREGGELRRYVHLGTGNYH----------------- 452 (672)
T ss_pred hhhHHHH-HHHH--HcCCEEEE-------cCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCC-----------------
Confidence 1233343 3454 37999863 12346899999999975 4677776662
Q ss_pred CCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEE-EEChHHHHHHHHHHHHHH
Q 001322 514 IWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCA-LWGPPCRDVARHFVQRWN 573 (1100)
Q Consensus 514 ~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~-v~Gpaa~dl~~~F~qrWn 573 (1100)
+ ++. ..|.|+++. ..|..+.|+...|..-|.
T Consensus 453 ---------~-------------------~ta-~~y~D~~l~t~~~~i~~d~~~~F~~l~~ 484 (672)
T TIGR03705 453 ---------P-------------------KTA-RLYTDLSLFTADPEIGRDVARVFNYLTG 484 (672)
T ss_pred ---------C-------------------ccc-ccccceeEEEeChHHHHHHHHHHHHhhC
Confidence 1 111 369999999 778899999999998875
No 19
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.60 E-value=1.1e-14 Score=150.45 Aligned_cols=157 Identities=26% Similarity=0.387 Sum_probs=116.8
Q ss_pred CCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhh
Q 001322 362 GSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALK 441 (1100)
Q Consensus 362 gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~ 441 (1100)
++..++..++.+++..++++|.+|+++|+|+.++++|.. ......|.++|.+|+++||+|+||+++.......
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~ 82 (176)
T cd00138 10 NNLDKKRVGGRSDLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK 82 (176)
T ss_pred ccccccCcCcchHHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch
Confidence 455688899999999999999999999999876555532 1235789999999999999999998765432211
Q ss_pred cchhhhHHHhhcc-CCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 001322 442 INSVYSKRKLLSI-HENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDY 520 (1100)
Q Consensus 442 ~~s~~~k~~L~~l-~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY 520 (1100)
....+. ..|... .++|++..++.... ...++|+|++|||++++++||.|+....|
T Consensus 83 ~~~~~~-~~l~~~~~~~i~~~~~~~~~~---~~~~~H~K~~iiD~~~~~vGS~N~~~~~~-------------------- 138 (176)
T cd00138 83 ISSAYL-DSLRALLDIGVRVFLIRTDKT---YGGVLHTKLVIVDDETAYIGSANLDGRSL-------------------- 138 (176)
T ss_pred HHHHHH-HHHHHhhcCceEEEEEcCCcc---cccceeeeEEEEcCCEEEEECCcCChhhh--------------------
Confidence 111222 223221 34788876654210 34689999999999999999999952211
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEECh--HHHHHHHHHHHHHHhh
Q 001322 521 YNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGP--PCRDVARHFVQRWNYA 575 (1100)
Q Consensus 521 ~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gp--aa~dl~~~F~qrWn~~ 575 (1100)
..++|+.+.+.+| +|.++.+.|.+.|+..
T Consensus 139 --------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 139 --------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred --------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 1467999999999 7999999999999864
No 20
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.51 E-value=1.7e-13 Score=161.21 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=104.7
Q ss_pred CCceEEEEecCCcccCCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeE
Q 001322 741 ASCRCQIIRSVSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFR 820 (1100)
Q Consensus 741 ~~~~vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~ 820 (1100)
..|.||+|-|.|.=-... ..-.+.+++|.++|.+|+++|+|+++||+++..... ..++.|.+++++|++ +||+
T Consensus 4 ~~~~~~~vesiP~~~~~~-~~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~~~----~~G~~i~~aL~~aA~--rGV~ 76 (424)
T PHA02820 4 DNTIAVITETIPIGMQFD-KVYLSTFNFWREILSNTTKTLDISSFYWSLSDEVGT----NFGTMILNEIIQLPK--RGVR 76 (424)
T ss_pred cccEEEEEEecCCCCCCC-CCCCCHHHHHHHHHHhhCcEEEEEeEEEecCccccc----hhHHHHHHHHHHHHH--CCCE
Confidence 469999999998721111 123489999999999999999999999996421111 234445555555554 4999
Q ss_pred EEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCcccccee
Q 001322 821 VIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVY 900 (1100)
Q Consensus 821 V~VVlP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iy 900 (1100)
|+|+++.. + .. ...++.|.+ .|+++..|-. ..+ . ...
T Consensus 77 VRIL~d~~-~----~~----------------------~~~~~~L~~-aGv~v~~~~~----~~~----~-------~~~ 113 (424)
T PHA02820 77 VRIAVNKS-N----KP----------------------LKDVELLQM-AGVEVRYIDI----TNI----L-------GGV 113 (424)
T ss_pred EEEEECCC-C----Cc----------------------hhhHHHHHh-CCCEEEEEec----CCC----C-------ccc
Confidence 99999842 2 11 012356777 5887765421 111 1 137
Q ss_pred eeeeEEEEeCcEEEEcccccCcCccCCCCCcceeEEEEcC
Q 001322 901 VHSKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLIEDK 940 (1100)
Q Consensus 901 vHSKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I~d~ 940 (1100)
+|+|+||||+++++|||+||++||+ ..+.|+++.+.+.
T Consensus 114 ~HrK~~VIDg~~~~iGS~Nid~rsl--~~n~E~gv~i~~~ 151 (424)
T PHA02820 114 LHTKFWISDNTHIYLGSANMDWRSL--TQVKELGIAIFNN 151 (424)
T ss_pred ceeeEEEECCCEEEEeCCcCChhhh--hhCCceEEEEecc
Confidence 9999999999999999999999999 5889999988763
No 21
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.50 E-value=1.1e-13 Score=143.00 Aligned_cols=149 Identities=28% Similarity=0.295 Sum_probs=103.9
Q ss_pred EEEEecCCcccCCCcccHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Q 001322 745 CQIIRSVSQWSAGTSQLEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIV 824 (1100)
Q Consensus 745 vQilRS~~~WS~G~~~~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VV 824 (1100)
.|+++|.+.|..+...++.++.++++++|.+|++.|+|+.+||.+.. ......|.++|.++ .+ +|++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~~~~~~l~~~L~~a----~~--rGv~V~il 72 (176)
T cd00138 2 VQLGESPSNNLDKKRVGGRSDLDALLEAISNAKKSIYIASFYLSPLI---TEYGPVILDALLAA----AR--RGVKVRIL 72 (176)
T ss_pred ceeccCCCccccccCcCcchHHHHHHHHHHhhheEEEEEEeEecccc---cccchHHHHHHHHH----HH--CCCEEEEE
Confidence 46788888877666566789999999999999999999999998631 00113566666544 33 39999999
Q ss_pred ecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhc--CCCcccccccccccccccccCCCCccccceeee
Q 001322 825 IPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALL--GPKTHDYISFYGLRAYGRLFEDGPVATSQVYVH 902 (1100)
Q Consensus 825 lP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~--G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvH 902 (1100)
+...+.... . .....+..|..+. |+.+ +.+..... ....+|
T Consensus 73 ~~~~~~~~~------~----------------~~~~~~~~l~~~~~~~i~~------~~~~~~~~---------~~~~~H 115 (176)
T cd00138 73 VDEWSNTDL------K----------------ISSAYLDSLRALLDIGVRV------FLIRTDKT---------YGGVLH 115 (176)
T ss_pred EcccccCCc------h----------------HHHHHHHHHHHhhcCceEE------EEEcCCcc---------ccccee
Confidence 987654110 0 0112345555431 3322 21211100 124899
Q ss_pred eeEEEEeCcEEEEcccccCcCccCCCCCcceeEEEEcCc
Q 001322 903 SKVMIIDDSIALIGSANINDRSLLGSRDSEIGVLIEDKE 941 (1100)
Q Consensus 903 SKlmIVDD~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~ 941 (1100)
+|+||||++.+++||+|++.+|+. .|.|+++++.+++
T Consensus 116 ~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 116 TKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred eeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 999999999999999999999994 8999999999986
No 22
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.43 E-value=2.9e-11 Score=137.48 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcccEEEEee--ecCCc-eeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhhHH
Q 001322 373 AAFEAIASSIEDAKSEIFICG--WWLCP-ELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKR 449 (1100)
Q Consensus 373 ~~f~al~~aI~~Ak~sI~I~~--WwlsP-e~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~ 449 (1100)
..+++.++.|++|+++++|+. |-|-- ++|+-.. ....+..+...|..++.+||.|||..-...+.. .+... .
T Consensus 72 sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~ds-St~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~--~~~d~--~ 146 (456)
T KOG3603|consen 72 STKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDS-STQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP--PNADL--Q 146 (456)
T ss_pred cHHHHHHHHhhccceEEEEEEEeeccccceeccCCC-cchHHHHHHHHHHHhccCCeEEEEEeecCCCCC--CcccH--H
Confidence 345999999999999999964 54432 2322221 234688999999999999999999753332211 11111 2
Q ss_pred HhhccCCC-eEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCC
Q 001322 450 KLLSIHEN-VRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLC 496 (1100)
Q Consensus 450 ~L~~l~~n-I~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~ 496 (1100)
.|.. .| ++|..-+.+-..+ -.-.|-|.+|||++.-|+||.|+.
T Consensus 147 ~Le~--~Gaa~vr~id~~~l~g--~GvlHtKf~vvD~khfylGSaNfD 190 (456)
T KOG3603|consen 147 VLES--LGLAQVRSIDMNRLTG--GGVLHTKFWVVDIKHFYLGSANFD 190 (456)
T ss_pred HHHh--CCCceEEeeccccccc--CceEEEEEEEEecceEEEeccccc
Confidence 2332 34 5554433221111 235799999999999999999994
No 23
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.36 E-value=3.6e-12 Score=153.41 Aligned_cols=146 Identities=21% Similarity=0.314 Sum_probs=109.9
Q ss_pred CCeEEEEecHH-----HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechh
Q 001322 362 GSQAQWFVDGK-----AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEV 436 (1100)
Q Consensus 362 gn~v~~lvdG~-----~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~ 436 (1100)
...++++.+|. +.+.++.++|.+||++|+|+. .|+++ +..+.++|+.||+|||+|+||+....
T Consensus 328 ~~~~q~~~sgp~~~~~~i~~~~l~~I~~A~~~I~I~t------pYf~p------d~~l~~aL~~Aa~rGV~Vrii~p~~~ 395 (509)
T PRK12452 328 EGAVQIVASGPSSDDKSIRNTLLAVMGSAKKSIWIAT------PYFIP------DQETLTLLRLSAISGIDVRILYPGKS 395 (509)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHHHhhhEEEEEC------CccCC------CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 34789999987 789999999999999999963 46654 36899999999999999999985422
Q ss_pred hhHhh--cchhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCC
Q 001322 437 ALALK--INSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (1100)
Q Consensus 437 ~~~l~--~~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~ 514 (1100)
..... ....+. ..|. .+||+|+.|... ..|.|++|||+++|++||.|+..--+
T Consensus 396 D~~~~~~a~~~~~-~~L~--~aGv~I~~y~~~--------~lHaK~~ivD~~~a~vGS~Nld~RS~-------------- 450 (509)
T PRK12452 396 DSIISDQASQSYF-TPLL--KAGASIYSYKDG--------FMHAKIVLVDDKIATIGTANMDVRSF-------------- 450 (509)
T ss_pred ChHHHHHHHHHHH-HHHH--HcCCEEEEecCC--------CeeeeEEEECCCEEEEeCcccCHhHh--------------
Confidence 21110 011111 2333 479999887542 37999999999999999999941000
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhh
Q 001322 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYA 575 (1100)
Q Consensus 515 ~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~ 575 (1100)
...|.+..+...|+.|.++.+.|.++|..+
T Consensus 451 -------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s 480 (509)
T PRK12452 451 -------------------------------ELNYEIISVLYESETVHDIKRDFEDDFKHS 480 (509)
T ss_pred -------------------------------hhhhhccEEEECHHHHHHHHHHHHHHHHhC
Confidence 124557788889999999999999999865
No 24
>PRK13912 nuclease NucT; Provisional
Probab=99.33 E-value=3e-11 Score=126.48 Aligned_cols=142 Identities=21% Similarity=0.217 Sum_probs=97.5
Q ss_pred cHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhh-H
Q 001322 370 DGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYS-K 448 (1100)
Q Consensus 370 dG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~-k 448 (1100)
++.+.+..++++|++|+++|+| .+|.+. ...|.++|.+|++|||+|+||+ |..... +.... -
T Consensus 30 ~~~~~~~~l~~~I~~Ak~sI~i-------~~Y~~~------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~---~~~~~~~ 92 (177)
T PRK13912 30 EQKDALNKLVSLISNARSSIKI-------AIYSFT------HKDIAKALKSAAKRGVKISIIY-DYESNH---NNDQSTI 92 (177)
T ss_pred ChHHHHHHHHHHHHhcccEEEE-------EEEEEc------hHHHHHHHHHHHHCCCEEEEEE-eCcccc---CcchhHH
Confidence 4567899999999999999999 578776 2579999999999999999987 433211 11110 0
Q ss_pred HHhhccCCCeEEEEc-CCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 449 RKLLSIHENVRVLRY-PDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESE 527 (1100)
Q Consensus 449 ~~L~~l~~nI~V~r~-p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d 527 (1100)
..+. ..+|+++..+ +...........+|.|++|||++++++||.|++...+. .
T Consensus 93 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~H~K~~viD~~~~~iGS~N~t~~s~~-------------------~------ 146 (177)
T PRK13912 93 GYLD-KYPNIKVCLLKGLKAKNGKYYGIMHQKVAIIDDKIVVLGSANWSKNAFE-------------------N------ 146 (177)
T ss_pred HHHH-hCCCceEEEecCccccCcccccccceeEEEEcCCEEEEeCCCCChhHhc-------------------c------
Confidence 1122 2357776554 22111122345689999999999999999999521110 0
Q ss_pred CCCccccccccccCCCCCCCCeEEEEEEEEChH-HHHHHHHHHHHHHhh
Q 001322 528 PNSWEDTMRDELDRGKYPRMPWHDIHCALWGPP-CRDVARHFVQRWNYA 575 (1100)
Q Consensus 528 ~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~qrWn~~ 575 (1100)
=+++.+.+..|. +.++.+.|.+.|...
T Consensus 147 ---------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 ---------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred ---------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 124677777765 688999999999754
No 25
>PRK13912 nuclease NucT; Provisional
Probab=99.31 E-value=1.6e-11 Score=128.56 Aligned_cols=130 Identities=23% Similarity=0.314 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCch
Q 001322 762 EESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAA 841 (1100)
Q Consensus 762 E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~ 841 (1100)
...+...++++|.+|++.|+|+. |+++. ..|.+||.+ |++ +||+|+|+++.... ... ..
T Consensus 31 ~~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~--------~~i~~aL~~----Aa~--RGV~VrIlld~~~~----~~~--~~ 89 (177)
T PRK13912 31 QKDALNKLVSLISNARSSIKIAI-YSFTH--------KDIAKALKS----AAK--RGVKISIIYDYESN----HNN--DQ 89 (177)
T ss_pred hHHHHHHHHHHHHhcccEEEEEE-EEEch--------HHHHHHHHH----HHH--CCCEEEEEEeCccc----cCc--ch
Confidence 34678999999999999999996 65554 256666654 433 59999999986532 100 00
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEEcccccC
Q 001322 842 SVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIN 921 (1100)
Q Consensus 842 s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN 921 (1100)
.. +..|.+..+++...+ -+++.. .+ +...++|+|+||||++++++||+|++
T Consensus 90 --~~----------------~~~l~~~~~~~~~~~---~~~~~~-----~~---~~~~~~H~K~~viD~~~~~iGS~N~t 140 (177)
T PRK13912 90 --ST----------------IGYLDKYPNIKVCLL---KGLKAK-----NG---KYYGIMHQKVAIIDDKIVVLGSANWS 140 (177)
T ss_pred --hH----------------HHHHHhCCCceEEEe---cCcccc-----Cc---ccccccceeEEEEcCCEEEEeCCCCC
Confidence 00 111211111111110 011100 00 11237899999999999999999999
Q ss_pred cCccCCCCCcceeEEEEcCccc
Q 001322 922 DRSLLGSRDSEIGVLIEDKESV 943 (1100)
Q Consensus 922 ~RSm~G~~DsEi~v~I~d~~~~ 943 (1100)
.+|+ ..|.|+.+++.|++.+
T Consensus 141 ~~s~--~~N~E~~lii~d~~~~ 160 (177)
T PRK13912 141 KNAF--ENNYEVLLITDDTETI 160 (177)
T ss_pred hhHh--ccCCceEEEECCHHHH
Confidence 9999 5899999999998754
No 26
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.31 E-value=1.4e-11 Score=142.98 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcccEEEEeeecCCceeEEEcCC-CCchhHHHHHHHHHHh-hCCcEEEEEEechhhhHhhcchhhhHHHhh
Q 001322 375 FEAIASSIEDAKSEIFICGWWLCPELYLRRPF-HNHASSRLDALLEAKA-KQGVQIYILLYKEVALALKINSVYSKRKLL 452 (1100)
Q Consensus 375 f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~-~~~~~~rL~~lL~~aA-~rGVkVrILl~d~~~~~l~~~s~~~k~~L~ 452 (1100)
.++++++|.+||++|+|+..-+.|. .... ....+..|.++|.+|| +|||+||||+. ..+........+. +.|.
T Consensus 218 ~~~ll~~I~~Ak~~I~I~t~yf~P~---~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~-~~~~~~~~~~~~~-~~L~ 292 (369)
T PHA03003 218 ADVVLHKIKSAKKSIDLELLSLVPV---IREDDKTTYWPDIYNALIRAAINRGVKVRLLVG-SWKKNDVYSMASV-KSLQ 292 (369)
T ss_pred HHHHHHHHHHHhhEEEEEEeccccE---EeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEe-cCCcCCchhhhHH-HHHH
Confidence 4899999999999999965322221 1110 1123468999999885 99999999974 3221100111222 3444
Q ss_pred ccC--CCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 453 SIH--ENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNS 530 (1100)
Q Consensus 453 ~l~--~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~ 530 (1100)
... .++.|..|. ..+|+|++|||+++|++||+|+....+. .
T Consensus 293 ~~G~~~~i~vri~~---------~~~H~K~~VVD~~~a~iGS~N~d~~s~~--------------------~-------- 335 (369)
T PHA03003 293 ALCVGNDLSVKVFR---------IPNNTKLLIVDDEFAHITSANFDGTHYL--------------------H-------- 335 (369)
T ss_pred HcCCCCCceEeeec---------CCCCceEEEEcCCEEEEeccccCchhhc--------------------c--------
Confidence 321 233333221 1279999999999999999999521110 0
Q ss_pred ccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHHHhh
Q 001322 531 WEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRWNYA 575 (1100)
Q Consensus 531 ~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrWn~~ 575 (1100)
..|.++ ....|++|.+|+..|.++|+..
T Consensus 336 ----------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 ----------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred ----------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122232 2467999999999999999854
No 27
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.20 E-value=6.7e-11 Score=115.74 Aligned_cols=105 Identities=23% Similarity=0.365 Sum_probs=80.0
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
+|+|.+++-..+ +++|+|+++.|..+|+|.|||+||..||.+|+... .+..++
T Consensus 5 ~v~I~~~~~~~~------~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~-----------------~~~~~~---- 57 (116)
T cd06875 5 KIRIPSAETVEG------YTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEH-----------------KVDKDL---- 57 (116)
T ss_pred EEEECCEEEECC------EEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHc-----------------CcccCc----
Confidence 788888765433 78999999999999999999999999999888411 011001
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhccccC
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLS 203 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~s 203 (1100)
+|. ++.++ ..+.+.+.||.+||+||+.||.++..+++.++..||+++.+.
T Consensus 58 ----------------------------~P~-Kk~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~~ 108 (116)
T cd06875 58 ----------------------------LPP-KKLIGNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKYE 108 (116)
T ss_pred ----------------------------CCC-ccccCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCcee
Confidence 221 23333 234556677889999999999999999999999999999986
Q ss_pred CC
Q 001322 204 FS 205 (1100)
Q Consensus 204 f~ 205 (1100)
-+
T Consensus 109 ~~ 110 (116)
T cd06875 109 II 110 (116)
T ss_pred Ee
Confidence 43
No 28
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.14 E-value=1.7e-10 Score=112.53 Aligned_cols=114 Identities=32% Similarity=0.472 Sum_probs=71.7
Q ss_pred HHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhHHHHHHH
Q 001322 770 CSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHW 849 (1100)
Q Consensus 770 l~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~im~~ 849 (1100)
+++|.+|++.|+|..+||... .|.++|.++ . .+|++|.|++....+ +.+... ..
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~---------~i~~~l~~~----~--~~gv~v~ii~~~~~~------~~~~~~-~~---- 55 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP---------DIIKALLDA----A--KRGVKVRIIVDSNQD------DSEAIN-LA---- 55 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC---------HHHHHHHHH----H--HTT-EEEEEEECGGG------HHCCCS-HH----
T ss_pred HHHHhccCCEEEEEEEecCcH---------HHHHHHHHH----H--HCCCeEEEEECCCcc------ccchhh-hH----
Confidence 689999999999999998443 566666543 2 248999999975321 000000 00
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEEcccccCcCccCCCC
Q 001322 850 QYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANINDRSLLGSR 929 (1100)
Q Consensus 850 qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~RSm~G~~ 929 (1100)
....+..+....|+.+. .++|+|++|+||+++++||+|++.+|+ .+
T Consensus 56 --------~~~~~~~~~~~~~i~v~------------------------~~~H~K~~i~d~~~~iiGS~N~t~~~~--~~ 101 (126)
T PF13091_consen 56 --------SLKELRELLKNAGIEVR------------------------NRLHAKFYIIDDKVAIIGSANLTSSSF--RR 101 (126)
T ss_dssp --------HHHHHHHHHHHTTHCEE------------------------S-B--EEEEETTTEEEEES--CSCCCS--CT
T ss_pred --------HHHHHHhhhccceEEEe------------------------cCCCcceEEecCccEEEcCCCCCcchh--cC
Confidence 11123333222344322 288999999999999999999999999 58
Q ss_pred CcceeEEEEcCccc
Q 001322 930 DSEIGVLIEDKESV 943 (1100)
Q Consensus 930 DsEi~v~I~d~~~~ 943 (1100)
|.|+++.+.|++.+
T Consensus 102 n~E~~~~~~~~~~~ 115 (126)
T PF13091_consen 102 NYELGVIIDDPELV 115 (126)
T ss_dssp SEEEEEEEECHHHH
T ss_pred CcceEEEEECHHHH
Confidence 99999999998643
No 29
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.06 E-value=1.9e-09 Score=105.17 Aligned_cols=123 Identities=22% Similarity=0.360 Sum_probs=80.4
Q ss_pred HHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhhHHHhhcc--C
Q 001322 378 IASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLSI--H 455 (1100)
Q Consensus 378 l~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~L~~l--~ 455 (1100)
|.++|.+|+++|+|+..++ . ...|.++|..++++||+|+|++.+......... ......+..+ .
T Consensus 1 l~~~i~~A~~~i~i~~~~~-------~------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~~-~~~~~~~~~~~~~ 66 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI-------T------DPDIIKALLDAAKRGVKVRIIVDSNQDDSEAIN-LASLKELRELLKN 66 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------------SCHHHHHHHHHHHTT-EEEEEEECGGGHHCCCS-HHHHHHHHHHHHH
T ss_pred CHHHHhccCCEEEEEEEec-------C------cHHHHHHHHHHHHCCCeEEEEECCCccccchhh-hHHHHHHHhhhcc
Confidence 5789999999999976444 1 246788888899999999999865432110001 1111222221 3
Q ss_pred CCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 001322 456 ENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRESEPNSWEDTM 535 (1100)
Q Consensus 456 ~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~~d~~~~~~~~ 535 (1100)
.|+++. ...|.|++|||++++++||.|++...|
T Consensus 67 ~~i~v~------------~~~H~K~~i~d~~~~iiGS~N~t~~~~----------------------------------- 99 (126)
T PF13091_consen 67 AGIEVR------------NRLHAKFYIIDDKVAIIGSANLTSSSF----------------------------------- 99 (126)
T ss_dssp TTHCEE------------S-B--EEEEETTTEEEEES--CSCCCS-----------------------------------
T ss_pred ceEEEe------------cCCCcceEEecCccEEEcCCCCCcchh-----------------------------------
Confidence 577765 157999999999999999999962211
Q ss_pred cccccCCCCCCCCeEEEEEEEEChH-HHHHHHHHHHHH
Q 001322 536 RDELDRGKYPRMPWHDIHCALWGPP-CRDVARHFVQRW 572 (1100)
Q Consensus 536 ~~~ldr~~~~r~pWhDv~~~v~Gpa-a~dl~~~F~qrW 572 (1100)
.-.++..+.+.+|. +.++.+.|.+.|
T Consensus 100 -----------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -----------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 12458999999996 899999999889
No 30
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.06 E-value=1e-09 Score=131.82 Aligned_cols=145 Identities=21% Similarity=0.318 Sum_probs=105.3
Q ss_pred CCeEEEEecHHH-----HHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechh
Q 001322 362 GSQAQWFVDGKA-----AFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEV 436 (1100)
Q Consensus 362 gn~v~~lvdG~~-----~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~ 436 (1100)
+..++++.+|.+ ....+.++|.+||++|+|++ .|+.+ ...+.++|+.||+|||+|+||+.+..
T Consensus 302 ~~~~qi~~sgP~~~~~~~~~~~~~~I~~A~~~I~I~t------pYfip------~~~i~~aL~~Aa~rGV~Vril~p~~~ 369 (483)
T PRK01642 302 GHTVQVIASGPGDPEETIHQFLLTAIYSARERLWITT------PYFVP------DEDLLAALKTAALRGVDVRIIIPSKN 369 (483)
T ss_pred CceEEEEeCCCCChhhHHHHHHHHHHHHhccEEEEEc------CCcCC------CHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 457888887753 66789999999999999963 46554 36899999999999999999986533
Q ss_pred hhHh-h-cchhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCC
Q 001322 437 ALAL-K-INSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLI 514 (1100)
Q Consensus 437 ~~~l-~-~~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~ 514 (1100)
...+ . ....+. ..|. ..||+++.|... ..|.|++|||+++|++|+.|+..--+
T Consensus 370 d~~~~~~~~~~~~-~~L~--~~Gv~I~~y~~~--------~~HaK~~ivD~~~~~vGS~N~d~rS~-------------- 424 (483)
T PRK01642 370 DSLLVFWASRAFF-TELL--EAGVKIYRYEGG--------LLHTKSVLVDDELALVGTVNLDMRSF-------------- 424 (483)
T ss_pred CcHHHHHHHHHHH-HHHH--HcCCEEEEeCCC--------ceEeEEEEECCCEEEeeCCcCCHhHH--------------
Confidence 2211 0 011111 2333 479999888532 36999999999999999999941100
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEECh-HHHHHHHHHHHHHHhh
Q 001322 515 WPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGP-PCRDVARHFVQRWNYA 575 (1100)
Q Consensus 515 ~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~~ 575 (1100)
+. =+++.+.+.+| .+.++.+.|.++|..+
T Consensus 425 -----~~---------------------------N~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 425 -----WL---------------------------NFEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred -----hh---------------------------hhcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 00 12678888887 5889999999999765
No 31
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.03 E-value=6e-10 Score=110.75 Aligned_cols=105 Identities=25% Similarity=0.327 Sum_probs=75.5
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeee----------EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQF----------KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQ 114 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~f----------kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~ 114 (1100)
+|.|.+++-....+ ...++|.|+++-... .|+|.|+|+||..||.+||. .+.. +.
T Consensus 10 ~~~I~~~~~~~~~~--~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~------------~~~~-~~ 74 (127)
T cd06878 10 RANIQSAEVTVEDD--KEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKE------------CSSW-LK 74 (127)
T ss_pred eEEEeeeEEEcCCC--eEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHH------------HCCC-cc
Confidence 68899988533322 247899999997643 49999999999999998884 1111 10
Q ss_pred --hCCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChh
Q 001322 115 --NLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSR 191 (1100)
Q Consensus 115 --~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~ 191 (1100)
.+|.++ ++.++ ....+.++||.+||.||+.||....++++.
T Consensus 75 ~~~lP~pp------------------------------------Kk~~~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~ 118 (127)
T cd06878 75 KVELPSLS------------------------------------KKWFKSIDKKFLDKSKNQLQKYLQFILEDETLCQSE 118 (127)
T ss_pred ccCCCCCC------------------------------------ccccccCCHHHHHHHHHHHHHHHHHHhCChhhcCCH
Confidence 122111 22222 345667788899999999999999999999
Q ss_pred hhhhhhhcc
Q 001322 192 EVCKFLEAS 200 (1100)
Q Consensus 192 ~l~~FLevS 200 (1100)
.+.+||.-|
T Consensus 119 ~l~~FLsp~ 127 (127)
T cd06878 119 ALYSFLSPS 127 (127)
T ss_pred HHHHHcCCC
Confidence 999999865
No 32
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.01 E-value=9.8e-10 Score=106.10 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=76.3
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG-~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
+|+|++.++..++. ..+++|+|+++.+ .-+|+|.|+|+||..||.+|+. ... . .+++|+
T Consensus 2 ~~~v~~~~~~~~~~--~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~-------------~~~-~-~~~lP~--- 61 (107)
T cd06872 2 SCRVLGAEIVKSGS--KSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKE-------------VPK-Y-NLELPP--- 61 (107)
T ss_pred eeEEeeeEEEecCC--ccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHh-------------ccC-C-CCCCCC---
Confidence 68999999977764 2488999999985 7799999999999999998873 000 0 112212
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCccc--CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG--RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~--~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
+..++ .+..+.+.|+.+||.||+.|+..+.++++..+.+||.
T Consensus 62 ---------------------------------K~~~~~~~~~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 62 ---------------------------------KRFLSSSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred ---------------------------------ccccCCCCCHHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 12221 2345567778999999999999999999999999984
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=4.9e-10 Score=122.52 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=77.6
Q ss_pred CceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccc
Q 001322 61 PMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (1100)
Q Consensus 61 ~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 140 (1100)
..+++|.|.++.|...|+|+|+|+||++||.+|.. +..+.|++ || |
T Consensus 25 ~~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~---------e~~i~k~l---lp--p-------------------- 70 (490)
T KOG1259|consen 25 GGVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVG---------EISISKKL---LP--P-------------------- 70 (490)
T ss_pred CceEEEEEEEEecceeeeehhhhhHHHHHHHHhhh---------hheecccc---CC--c--------------------
Confidence 35899999999999999999999999999998874 22444553 33 3
Q ss_pred ccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhccccCC
Q 001322 141 SSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLSF 204 (1100)
Q Consensus 141 ~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~sf 204 (1100)
++.+| .++++.++|+++||-|||+||-...-..++.+++||+|+.|-.
T Consensus 71 ----------------kk~ig~~~~s~~e~r~~~leiylq~ll~~f~~~~pr~la~fl~f~~y~i 119 (490)
T KOG1259|consen 71 ----------------KKLVGNKQPSFLEQRREQLEIYLQELLIYFRTELPRALAEFLDFNKYDI 119 (490)
T ss_pred ----------------hhhcCCCChhHHHHHHHHHHHHHHHHHHHccccCHHHHHHHhccchHHH
Confidence 34455 4678888999999999999998887789999999999999863
No 34
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.99 E-value=3.5e-09 Score=124.58 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchh
Q 001322 763 ESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAAS 842 (1100)
Q Consensus 763 ~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s 842 (1100)
.+...+++.+|++|+++||||+.+|..+ .++.+|.+++++|++ +||+|+|+++.. |....
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d---------~~g~~l~~aL~~aa~--rGV~Vril~D~~----gs~~~----- 76 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFED---------KVGKQLHAALLAAAQ--RGVKVEVLVDGY----GSPDL----- 76 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecC---------chHHHHHHHHHHHHH--CCCEEEEEEECC----CCCCC-----
Confidence 3799999999999999999999888664 466677777777665 489999999854 11110
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEEcccccCc
Q 001322 843 VRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIND 922 (1100)
Q Consensus 843 ~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN~ 922 (1100)
...+++.|.+ .|+++..|-....+..+ ++ + -....|.|++|||+++++|||.|+.+
T Consensus 77 ---------------~~~~~~~L~~-aGv~v~~~~p~~~~~~~-~~--~-----~~~R~HrKiiVIDg~~a~vGg~N~~~ 132 (411)
T PRK11263 77 ---------------SDEFVNELTA-AGVRFRYFDPRPRLLGM-RT--N-----LFRRMHRKIVVIDGRIAFVGGINYSA 132 (411)
T ss_pred ---------------CHHHHHHHHH-CCeEEEEeCCccccccc-cc--c-----cccCCcceEEEEcCCEEEEcCeEchH
Confidence 1235677877 58876654221100000 00 0 01268999999999999999999987
Q ss_pred CccC--CC-CCcceeEEEEcCc
Q 001322 923 RSLL--GS-RDSEIGVLIEDKE 941 (1100)
Q Consensus 923 RSm~--G~-~DsEi~v~I~d~~ 941 (1100)
..+. |. .-..+++.|+.+.
T Consensus 133 ~~~~~~g~~~w~D~~v~i~Gp~ 154 (411)
T PRK11263 133 DHLSDYGPEAKQDYAVEVEGPV 154 (411)
T ss_pred hhccccCCCCceEEEEEEECHH
Confidence 5552 21 1356677777763
No 35
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=98.95 E-value=2.6e-09 Score=101.88 Aligned_cols=105 Identities=21% Similarity=0.377 Sum_probs=71.0
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
+|+|++.++..+. ....+.|+|++..|...|+|.|+|+||..||.+|+. . .+ ...+|+
T Consensus 5 ~v~v~~~~~~~~~--~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~-----~-------~~----~~~~p~---- 62 (113)
T PF00787_consen 5 QVSVVDPETSGNK--KKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKK-----R-------FP----SRKLPP---- 62 (113)
T ss_dssp EEEEEEEEEESSS--SEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHH-----H-------HT----TSGSTS----
T ss_pred EEEEcCCEEEcCC--CEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhh-----h-------hc----cccccc----
Confidence 6888887766332 223445555555555799999999999999998884 1 11 111212
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc----CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG----RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~----~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
+|. +.... ....+.+.|+..||.||+.|+.++.+.++..+++||+.|
T Consensus 63 ----------------------------~P~-~~~~~~~~~~~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 63 ----------------------------FPP-KQWFSNSRNLDPEFIEERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp ----------------------------SST-SSSSSSSSTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred ----------------------------CCc-cccccccccccHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 111 11111 234566677889999999999999998899999999986
No 36
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=98.94 E-value=6.4e-09 Score=100.95 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=74.7
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
.|+|.+++..+... ...+++|+|+++.+.-.|+|.|+|+||..||.+|+. . +++++
T Consensus 2 ~V~Ip~~~~~~~~~-~~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~------------~-------~~~p~---- 57 (110)
T cd06880 2 EVSIPSYRLEVDES-EKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKK------------S-------IKTPD---- 57 (110)
T ss_pred EEEeCcEEEeeCCC-CCCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHH------------H-------CCCCC----
Confidence 35666655533321 234899999999999999999999999999998874 1 12111
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhccccCC
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLSF 204 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~sf 204 (1100)
||. +......+.+.+.||.+||.||+.|+..+. .+..+.+||++....-
T Consensus 58 ----------------------------~P~-K~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~~~ 106 (110)
T cd06880 58 ----------------------------FPP-KRVRNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHFPS 106 (110)
T ss_pred ----------------------------CCC-CCccCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCCCC
Confidence 221 111112334556777899999999998776 6899999999987764
Q ss_pred C
Q 001322 205 S 205 (1100)
Q Consensus 205 ~ 205 (1100)
.
T Consensus 107 ~ 107 (110)
T cd06880 107 L 107 (110)
T ss_pred C
Confidence 4
No 37
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=98.92 E-value=3.5e-09 Score=104.34 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=69.4
Q ss_pred eeEEEEEEEeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccccccc
Q 001322 63 LLSYTIEVQYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHD 139 (1100)
Q Consensus 63 ~~~YtIEl~hG~f---kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 139 (1100)
++.|.|++++|.+ .|+|.|||+||..||.+|+. . ...+|+|+
T Consensus 21 ~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~-----~-----------~~~~plP~------------------- 65 (120)
T cd06871 21 HTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQI-----S-----------GISLPLPP------------------- 65 (120)
T ss_pred cEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHH-----c-----------CCCCCCCC-------------------
Confidence 7899999999865 89999999999999998862 0 00134322
Q ss_pred cccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhccccCC
Q 001322 140 ESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLSF 204 (1100)
Q Consensus 140 ~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~sf 204 (1100)
++.++ ..+.+.+.||.+||.||+.++.++.++++..+.+||+.+.++.
T Consensus 66 -----------------K~~~g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~~ 114 (120)
T cd06871 66 -----------------KKLIGNMDREFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPNNYSA 114 (120)
T ss_pred -----------------ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccCCc
Confidence 22223 2334556667899999999999999999999999999888874
No 38
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=98.90 E-value=4.9e-09 Score=103.14 Aligned_cols=108 Identities=18% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCeEEEeeeeecCCCCCCCceeEEEEEEE--------eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001322 43 LPKASIVSVSRPDAGDISPMLLSYTIEVQ--------YKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQ 114 (1100)
Q Consensus 43 ~~~v~I~~ver~~s~~~~~~~~~YtIEl~--------hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~ 114 (1100)
.++++|.+++-.........+++|.|+++ .+.-.|+|.|+|+||..||.+|+. .+.. +.
T Consensus 2 ~~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~------------~~~~-~~ 68 (119)
T cd06877 2 AWRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTE------------FHGE-FP 68 (119)
T ss_pred cceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHH------------HCCC-CC
Confidence 46788888655322111124789999999 346799999999999999998874 0000 00
Q ss_pred hCCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhh
Q 001322 115 NLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREV 193 (1100)
Q Consensus 115 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l 193 (1100)
..| ||. +..++ ....+.++||.+||+||+.|+..+.++++..+
T Consensus 69 ~~~-----------------------------------lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~ 112 (119)
T cd06877 69 DAP-----------------------------------LPS-RRIFGPKSYEFLESKREIFEEFLQKLLQKPELRGSELL 112 (119)
T ss_pred CCC-----------------------------------CcC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCcccccCHHH
Confidence 011 231 22333 34556677788999999999999999999999
Q ss_pred hhhhhc
Q 001322 194 CKFLEA 199 (1100)
Q Consensus 194 ~~FLev 199 (1100)
.+||..
T Consensus 113 ~~FL~~ 118 (119)
T cd06877 113 YDFLSP 118 (119)
T ss_pred HHhCCC
Confidence 999975
No 39
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=98.89 E-value=5.5e-09 Score=101.19 Aligned_cols=106 Identities=17% Similarity=0.327 Sum_probs=74.7
Q ss_pred CCeEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 001322 43 LPKASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHM 122 (1100)
Q Consensus 43 ~~~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~ 122 (1100)
+|-|+|.+..-.. .....+++|.|+++.|.-.|+|.|+|+||..||.+|+. .+... .+|+|+
T Consensus 2 ~~~~~i~~~~~~~--~~~~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~------------~~~~~--~~~lP~-- 63 (109)
T cd06870 2 CPSVSIPSSDEDR--EKKKRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKK------------QFPAS--NLKIPG-- 63 (109)
T ss_pred Ccceeeccceeec--cCCCCeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHH------------HCccc--CcCCCC--
Confidence 4667777633211 11234899999999999999999999999999998873 11110 112211
Q ss_pred cccccCccccccccccccccccCCCCCCCCCCCCCCccc-C-CCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 123 AVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-R-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~-~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
+..++ + .+.+.+.|+..||+||+.|+.++.++++..+.+||++.
T Consensus 64 ----------------------------------K~~~~~~~~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 64 ----------------------------------KRLFGNNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred ----------------------------------CcccccCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 22222 1 34456677789999999999999999999999999863
No 40
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.85 E-value=1.8e-08 Score=119.65 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhH
Q 001322 764 SIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASV 843 (1100)
Q Consensus 764 sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~ 843 (1100)
+...+++++|++|+++||||+.||-.+ ++++.|.+++.+|.++++||+|.|++...-+--|-+...+.
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D---------~~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~~~--- 102 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDD---------EAGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAAAS--- 102 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCC---------chHHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccCCC---
Confidence 699999999999999999999988765 35555555556666678999999999854221111111000
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhc-CCCcccccccccccc-cccccCCCCccccceeeeeeEEEEeCcEEEEcccccC
Q 001322 844 RAIMHWQYRTICRGQNSILHNLYALL-GPKTHDYISFYGLRA-YGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSANIN 921 (1100)
Q Consensus 844 r~im~~qyrtI~rG~~si~~~L~~~~-G~~~~~Yi~f~~Lr~-~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSANiN 921 (1100)
.+..+++..|.++. |+++. +|++.. ...+ ....|-|++||||++++.| ||||
T Consensus 103 ------------~~~~~~~~~l~~~~~gv~v~----~f~~p~~~~e~---------~gr~HrKi~IiD~~v~ysG-aNi~ 156 (451)
T PRK09428 103 ------------NTNADWYCEMAQEYPGVDIP----VYGVPVNTREA---------LGVLHLKGFIIDDTVLYSG-ASLN 156 (451)
T ss_pred ------------CcCHHHHHHHHHhCCCceEE----EcCCccccchh---------hhhceeeEEEECCCEEEec-cccc
Confidence 01234677787753 45543 333211 0011 1247999999999999999 8999
Q ss_pred cCccCC----CCCcceeEEEEcCccc
Q 001322 922 DRSLLG----SRDSEIGVLIEDKESV 943 (1100)
Q Consensus 922 ~RSm~G----~~DsEi~v~I~d~~~~ 943 (1100)
+-.+.. ..|. .+.|+++..+
T Consensus 157 d~Yl~~~~~~r~Dr--y~~i~g~~la 180 (451)
T PRK09428 157 NVYLHQHDKYRYDR--YHLIRNAELA 180 (451)
T ss_pred HHHhcCCcccCcce--EEEEeCchHH
Confidence 966531 1344 6668876543
No 41
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=98.84 E-value=1.3e-08 Score=98.17 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=72.1
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
+++|.++... + ..+++|+|+++.+...|+|.|+|+||..||.+|+. . .|..
T Consensus 2 ~v~ip~~~~~-~----~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~------------~-------~~~~----- 52 (108)
T cd06897 2 EISIPTTSVS-P----KPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLES------------E-------VGIE----- 52 (108)
T ss_pred eEEcCCeEEc-C----CCeEEEEEEEEcCCceEEEEcchHHHHHHHHHHHH------------H-------cCCC-----
Confidence 3555554333 1 23789999999999999999999999999998874 0 1100
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc---CCCCccHHHHHHHHHHHHHHHhhc--cccChhhhhhhhhc
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG---RQHSMSDRAKVAMQQYLNHFLGNM--DIVNSREVCKFLEA 199 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~---~~~~~~~r~r~~LE~YL~~lL~~~--~~~~~~~l~~FLev 199 (1100)
..| .||. ++.++ ..+.+.+.|+++||.||+.|+..+ .++++..+.+||++
T Consensus 53 ---------------------~~p---~lP~-K~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 53 ---------------------PPY---PLPP-KSWFLSTSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred ---------------------CCC---CCCC-cCEecccCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 000 1221 22222 234556677789999999999999 99999999999986
No 42
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=98.81 E-value=3.4e-08 Score=97.76 Aligned_cols=114 Identities=20% Similarity=0.327 Sum_probs=80.6
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG-~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
.|+|.+++..... ..+++|+|+++.. .-+|+|.|+|+||..||.+|+. .+|...
T Consensus 5 ~~~I~~~~~~~~~---~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~-------------------~fp~~~--- 59 (123)
T cd06882 5 SATIADIEEKRGF---TNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEE-------------------RFGPEA--- 59 (123)
T ss_pred EEEEeeeeEEeCC---CCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHH-------------------hCCccc---
Confidence 7899998764221 3489999999854 4589999999999999998873 133100
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhcc-ccChhhhhhhhhcccc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLEASKL 202 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~-~~~~~~l~~FLevS~~ 202 (1100)
....+++.+|. ||. +..+++...+.++||..||.||+.|++.+. ++.+..+..||..++-
T Consensus 60 ---------------~~~~~~~~lP~---lP~-k~~~~~~~~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~ 120 (123)
T cd06882 60 ---------------GSSAYDCTLPT---LPG-KIYVGRKAEIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTES 120 (123)
T ss_pred ---------------ccCCCCCccCC---CCC-CeecCccHHHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCcc
Confidence 00012233444 553 233444446778888999999999998875 7899999999987753
No 43
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=98.79 E-value=1.9e-08 Score=97.63 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=76.0
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeee-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQ-FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~-fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
+|.|++.+..+.. ..+++|.|+++.+. =.|+|.|+|+||..||.+|+. ...... .+
T Consensus 5 ~~~i~~~~~~~~~---~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~------------~~~~~~--~~------ 61 (110)
T cd07276 5 RPPILGYEVMEER---ARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQ------------MFPGFR--LS------ 61 (110)
T ss_pred cceeeeEEEeecC---CCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHH------------HCCCCC--CC------
Confidence 7889998765542 24889999999874 689999999999999998873 111100 11
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCccc--CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG--RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~--~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
||. +..++ ..+.+.+.|+..||.||+.|+.++.++++..+.+||+++
T Consensus 62 -----------------------------lP~-K~~~~~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 62 -----------------------------LPP-KRWFKDNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred -----------------------------CCC-cceecccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 221 22222 234566677889999999999999999999999999875
No 44
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.77 E-value=1.5e-09 Score=79.69 Aligned_cols=27 Identities=52% Similarity=0.940 Sum_probs=18.9
Q ss_pred cccCcceEEEEeCcEEEEccccCCCCC
Q 001322 473 LWSHHEKLVIVDYQICFIGGLDLCFGR 499 (1100)
Q Consensus 473 ~~~hHqKivVID~~vAfvGGiNL~~GR 499 (1100)
.|+||+|++|||+++||+||+|||.||
T Consensus 2 ~~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTTEEEEE---SSHHH
T ss_pred CcceeeEEEEEcCCEEEECceecCCCC
Confidence 589999999999999999999999664
No 45
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=98.72 E-value=6.7e-08 Score=93.73 Aligned_cols=102 Identities=19% Similarity=0.327 Sum_probs=71.6
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEeee--eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYKQ--FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG~--fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
|+|+++|.-.... .+++|.|+++... -+|+|.|+|+||..||.+|+. .+. ...+|+
T Consensus 2 ~~i~~~~~~~~~~---~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~------------~fp----~~~lp~--- 59 (109)
T cd06883 2 VSVFGFQKRYSPE---KYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSL------------LFP----SLKLPS--- 59 (109)
T ss_pred cEEEEEEEEecCC---ceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHH------------HCC----CCcCCC---
Confidence 6888887632211 2789999999854 789999999999999998874 100 111111
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccC--CCCccHHHHHHHHHHHHHHHhhc-cccChhhhhhhhhc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR--QHSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLEA 199 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~--~~~~~~r~r~~LE~YL~~lL~~~-~~~~~~~l~~FLev 199 (1100)
||. +..+++ ...+.++|+.+||+||+.||..+ .++++..+.+||..
T Consensus 60 -----------------------------lP~-k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 60 -----------------------------FPA-RVVLGRSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred -----------------------------CCC-CcccCccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 222 222332 13456677889999999999874 78899999999975
No 46
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=98.70 E-value=8.3e-08 Score=96.26 Aligned_cols=104 Identities=23% Similarity=0.351 Sum_probs=72.7
Q ss_pred CeEEEeeeeecCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 001322 44 PKASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGM 118 (1100)
Q Consensus 44 ~~v~I~~ver~~s~~~~~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~ 118 (1100)
++|.|.+..-..... ...+++|+|+++.+ ...|+|.|+|+||..||.+|+. .++ .+.+
T Consensus 20 ~~i~I~~~~~~~~~~-~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~------------~~~----~~~~ 82 (133)
T cd06876 20 TRVSIQSYISDVEEE-GKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKK------------RYP----GVLK 82 (133)
T ss_pred ceEEEeeEEeeecCC-CceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHH------------HCc----CCCC
Confidence 578888865533211 23588999999984 4799999999999999998874 111 1111
Q ss_pred CCCccccccCccccccccccccccccCCCCCCCCCCCCCCcccC---CCCccHHHHHHHHHHHHHHHhhccccChhhhhh
Q 001322 119 GDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR---QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCK 195 (1100)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~---~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~ 195 (1100)
++ ||. +..++. ...+.+.|+..||.||+.|+.++.++++..+.+
T Consensus 83 p~--------------------------------~P~-K~~~~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~ 129 (133)
T cd06876 83 LD--------------------------------FPQ-KRKISLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRK 129 (133)
T ss_pred CC--------------------------------CCc-cccccCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHH
Confidence 11 221 122221 244556667899999999999999999999999
Q ss_pred hh
Q 001322 196 FL 197 (1100)
Q Consensus 196 FL 197 (1100)
||
T Consensus 130 FL 131 (133)
T cd06876 130 FL 131 (133)
T ss_pred hh
Confidence 98
No 47
>PRK05443 polyphosphate kinase; Provisional
Probab=98.66 E-value=7.3e-08 Score=119.31 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=87.7
Q ss_pred HHHHHHHHhccc-----EEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCch
Q 001322 767 CAYCSLIEKAEH-----FIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAA 841 (1100)
Q Consensus 767 ~ayl~aI~~A~h-----fIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~ 841 (1100)
+..++.|++|.+ .|.|+-..+-+.. .|.+||.++ +++ |++|.|++|+.+.|..
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s--------~iv~aL~~A----a~~--Gk~V~vlve~karfde-------- 408 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS--------PIVDALIEA----AEN--GKQVTVLVELKARFDE-------- 408 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH--------HHHHHHHHH----HHc--CCEEEEEEccCccccH--------
Confidence 556789999999 7998754433331 577777654 433 8999999998865421
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCc-ccccccccccccccccCCCCccccceeeeeeEEEEeCc-------EE
Q 001322 842 SVRAIMHWQYRTICRGQNSILHNLYALLGPKT-HDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDS-------IA 913 (1100)
Q Consensus 842 s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~-~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~-------~~ 913 (1100)
.+-. +..+.|.+ .|+.+ +.| .+ ..+|||+++||++ ++
T Consensus 409 --~~n~------------~~~~~L~~-aGv~V~y~~-------------~~-------~k~HaK~~lid~~e~~~~~~~~ 453 (691)
T PRK05443 409 --EANI------------RWARRLEE-AGVHVVYGV-------------VG-------LKTHAKLALVVRREGGGLRRYV 453 (691)
T ss_pred --HHHH------------HHHHHHHH-cCCEEEEcc-------------CC-------ccceeEEEEEEeecCCceeEEE
Confidence 0111 34567887 49876 332 12 3899999999999 99
Q ss_pred EEcccccCcCccCCCCCcceeEEEEcCcccc
Q 001322 914 LIGSANINDRSLLGSRDSEIGVLIEDKESVD 944 (1100)
Q Consensus 914 iIGSANiN~RSm~G~~DsEi~v~I~d~~~~~ 944 (1100)
.|||+|+|.||. ..++|+++.+.|++++.
T Consensus 454 ~iGTgN~n~~s~--~~y~D~~l~t~d~~i~~ 482 (691)
T PRK05443 454 HLGTGNYNPKTA--RLYTDLSLLTADPEIGE 482 (691)
T ss_pred EEcCCCCCcchh--hhccceeEEEeChHHHH
Confidence 999999999999 59999999999988543
No 48
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=98.65 E-value=2e-07 Score=90.90 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=76.4
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQY-KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~h-G~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
+|.|.++.-.+. ..+|.|+++. +.-+|+|.|+|.||..||.+|+. . +|.-.
T Consensus 2 ~~~V~~~~~~~~------~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~------------~-------fp~ea--- 53 (112)
T cd06890 2 SASVESVLLEDN------RYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLD------------L-------FPAEA--- 53 (112)
T ss_pred eEEEEEEEEECC------EEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHH------------h-------CcHhh---
Confidence 477888766644 6899999999 57899999999999999998873 1 22100
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccC-CCCccHHHHHHHHHHHHHHHhhc-cccChhhhhhhhhc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLEA 199 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~-~~~~~~r~r~~LE~YL~~lL~~~-~~~~~~~l~~FLev 199 (1100)
+ .....+.+|. || .+.... ...+.+.|+..|+.||+.||.++ .+..+..+.+||+.
T Consensus 54 ----------g-----~~~~~~~lP~---lP--~~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 54 ----------G-----RNSSKRILPY---LP--GPVTDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred ----------C-----CCCCCCcCCC---CC--CCccCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 0 0012234444 33 122222 45667788899999999999999 77899999999975
No 49
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=98.65 E-value=1.3e-07 Score=93.37 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=72.7
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMG 119 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~h-----G~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~ 119 (1100)
+|.|++++....+. ..+++|.|++.. +.-.|+|.|||+||..||.+|+. . +|..
T Consensus 6 ~~~i~~~~~~~~~~--~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~-----~--------------~p~~ 64 (120)
T cd06873 6 TAVIINTGIVKEHG--KTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKE-----K--------------FPNL 64 (120)
T ss_pred EEEEeccEEEccCC--ceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHH-----H--------------CcCC
Confidence 68899988855432 358999999976 45789999999999999998874 0 1100
Q ss_pred CCccccccCccccccccccccccccCCCCCCCCCCCCCCcccC-CCCccHHHHHHHHHHHHHHHhhccccCh----hhhh
Q 001322 120 DHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNS----REVC 194 (1100)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~-~~~~~~r~r~~LE~YL~~lL~~~~~~~~----~~l~ 194 (1100)
..|. ||. +..++. ...+.++|+..||.||+.||....++++ ..+.
T Consensus 65 --------------------------~~~~---lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~ 114 (120)
T cd06873 65 --------------------------SKLS---FPG-KKTFNNLDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVL 114 (120)
T ss_pred --------------------------CCCC---CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHH
Confidence 0011 221 222332 3456667788999999999999998877 5777
Q ss_pred hhhhc
Q 001322 195 KFLEA 199 (1100)
Q Consensus 195 ~FLev 199 (1100)
.||+.
T Consensus 115 ~FL~~ 119 (120)
T cd06873 115 DFLEP 119 (120)
T ss_pred HHcCC
Confidence 77763
No 50
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.63 E-value=2.7e-07 Score=88.60 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=63.5
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchhh
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAK 324 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~ 324 (1100)
..|++||||+++..|.|.+++.+..+..+|.++..-. ...+..+..........++|.|.+.+|+..|.|.|...
T Consensus 14 k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~-----~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e 88 (103)
T cd01251 14 EGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQED-----GYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQD 88 (103)
T ss_pred CCceeEEEEEeCCEEEEECCCCCcCcCcEEEeecccc-----ceeEeccCCccccccccceEEEEeCCeEEEEECCCHHH
Confidence 4699999999999999999998888888887654210 00111000000011123599999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 001322 325 VRDWVAAINDAG 336 (1100)
Q Consensus 325 ~~~w~~~i~~~~ 336 (1100)
+.+|+++|+.+.
T Consensus 89 ~~~Wi~ai~~v~ 100 (103)
T cd01251 89 RREWIAAFQNVL 100 (103)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 51
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=98.60 E-value=1.2e-07 Score=90.00 Aligned_cols=87 Identities=25% Similarity=0.476 Sum_probs=59.1
Q ss_pred eeEEEEEEEe--eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccc
Q 001322 63 LLSYTIEVQY--KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (1100)
Q Consensus 63 ~~~YtIEl~h--G~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 140 (1100)
..+|+|++++ |..+|+|.|+|+||..||.+|+. .... ..+| +
T Consensus 12 ~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~------------~~~~--~~lP--~-------------------- 55 (105)
T smart00312 12 HYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKK------------HFPR--RILP--P-------------------- 55 (105)
T ss_pred eEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHH------------HCcC--CCCC--C--------------------
Confidence 4455555555 45899999999999999998874 1000 0122 1
Q ss_pred ccccCCCCCCCCCCCCCCccc----CCCCccHHHHHHHHHHHHHHHhhccccC-hhhhhhhhh
Q 001322 141 SSKKRDVPANAALPVIRPALG----RQHSMSDRAKVAMQQYLNHFLGNMDIVN-SREVCKFLE 198 (1100)
Q Consensus 141 ~~~~~~~p~~~~~~~~r~~l~----~~~~~~~r~r~~LE~YL~~lL~~~~~~~-~~~l~~FLe 198 (1100)
||. +..++ ..+.+.+.|+..||.||+.|+..+.+++ +..+.+||+
T Consensus 56 ------------lP~-k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 56 ------------LPP-KKLFGRLNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred ------------CCC-chhcccCCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 221 11111 1234556777899999999999999988 899999986
No 52
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=98.59 E-value=1.3e-07 Score=92.09 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=71.1
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEee----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~ 121 (1100)
+.|+++...+.+. ..+++|+|++... .-.|+|.|||+||..||.+|+. .+... +. ++
T Consensus 3 ~~i~~~~~~~~~~--~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~------------~~p~~---~~-~~- 63 (112)
T cd07279 3 FEIVSARTVKEGE--KKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRK------------QHPQL---MA-KV- 63 (112)
T ss_pred EEeccCeEEcCCC--eeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHH------------HCCCc---CC-CC-
Confidence 3455544433332 2488999999764 3569999999999999998873 11110 10 00
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
.+|. +..++ ..+.+.+.|+..||.||+.++.++.++++..+.+||+.
T Consensus 64 ------------------------------~lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 64 ------------------------------SFPR-KVLMGNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred ------------------------------CCCC-CeecccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 1332 22334 24556667788999999999999999999999999974
No 53
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=98.58 E-value=2.8e-07 Score=90.86 Aligned_cols=108 Identities=19% Similarity=0.185 Sum_probs=74.8
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeee---eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQ---FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~---fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~ 121 (1100)
.|+|++.+..........+++|.|+++.+. -.|+|.|+|+||..||.+|+. . .|..
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~------------~-------~p~~-- 62 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLD------------E-------FPRH-- 62 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHH------------H-------Cccc--
Confidence 467777666544322235899999999775 799999999999999998873 1 1100
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCccc-----CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhh
Q 001322 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-----RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (1100)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-----~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~F 196 (1100)
..+.+|. ||. +..++ ....+.+.|+..||.||+.|+.++.++++..+.+|
T Consensus 63 ---------------------~~~~~P~---lP~-K~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~F 117 (120)
T cd07280 63 ---------------------KRNEIPQ---LPP-KVPWYDSRVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEF 117 (120)
T ss_pred ---------------------ccCcCCC---CCC-CcccccccccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHh
Confidence 0011222 332 12222 23455667778999999999999999999999999
Q ss_pred hh
Q 001322 197 LE 198 (1100)
Q Consensus 197 Le 198 (1100)
|+
T Consensus 118 L~ 119 (120)
T cd07280 118 LL 119 (120)
T ss_pred hC
Confidence 97
No 54
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=98.57 E-value=3.8e-07 Score=88.74 Aligned_cols=102 Identities=19% Similarity=0.312 Sum_probs=74.2
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEE--eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQ--YKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHM 122 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~--hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~ 122 (1100)
.|+|++++.--.. ..+++|.|+++ -+.-.|+|.|+|+||..||.+|+. .+|+..
T Consensus 3 ~v~v~~~~kr~~~---~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~-------------------~FP~~~-- 58 (111)
T cd06884 3 RVTVVGFQKRYDP---EKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCR-------------------KFPLAK-- 58 (111)
T ss_pred EEEEEEEEEEecC---CCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHH-------------------HCCCCC--
Confidence 6899999883332 13789999987 555789999999999999998874 144211
Q ss_pred cccccCccccccccccccccccCCCCCCCCCCCCCCcccC--CCCccHHHHHHHHHHHHHHHhh-ccccChhhhhhhhh
Q 001322 123 AVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR--QHSMSDRAKVAMQQYLNHFLGN-MDIVNSREVCKFLE 198 (1100)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~--~~~~~~r~r~~LE~YL~~lL~~-~~~~~~~~l~~FLe 198 (1100)
.| .||. +..+|+ ...+.++|+..||.||+.||+. ..+.++..+..||+
T Consensus 59 ------------------------lp---~LP~-k~~~~~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 59 ------------------------LH---PLST-GSHVGRSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred ------------------------CC---CCCC-ceeecCCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 11 1443 223333 3567788889999999999986 55789999999986
No 55
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=98.56 E-value=2.6e-07 Score=90.80 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=71.6
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeee-------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQ-------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLG 117 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~-------fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp 117 (1100)
++.|.+.++..+ .+++|+|++..+. =.|+|.|+|+||..||.+|+. .++.......
T Consensus 4 ~~~V~d~~~~~~-----~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~------------~~~~~~~~~~ 66 (117)
T cd06881 4 SFTVTDTRRHKK-----GYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSR------------LHKQLYLSGS 66 (117)
T ss_pred EEEecCcceecC-----ceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHH------------HhhhccccCc
Confidence 456666666422 4899999998532 289999999999999998873 1111100001
Q ss_pred CCCCccccccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhh
Q 001322 118 MGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (1100)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~F 196 (1100)
+|+ ||. +..++ ..+.+.+.|+.+||.||+.++..+.++++..+.+|
T Consensus 67 ~P~--------------------------------lP~-K~~~g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~F 113 (117)
T cd06881 67 FPP--------------------------------FPK-GKYFGRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQF 113 (117)
T ss_pred CCC--------------------------------CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHH
Confidence 111 221 23344 24456667788999999999999999999999999
Q ss_pred hh
Q 001322 197 LE 198 (1100)
Q Consensus 197 Le 198 (1100)
||
T Consensus 114 l~ 115 (117)
T cd06881 114 FE 115 (117)
T ss_pred hc
Confidence 97
No 56
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=98.56 E-value=7.1e-07 Score=87.68 Aligned_cols=113 Identities=12% Similarity=0.229 Sum_probs=78.2
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQY-KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~h-G~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
.|+|+++|.--.. ..+++|.|+++- +.-+|+|+|+|.||..||.+|+. .+|. ...
T Consensus 3 ~~~~~~~~kr~~~---~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~-------------------~fp~--Eag 58 (118)
T cd06887 3 HIALLGFEKRFVP---SQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKE-------------------MFPI--EAG 58 (118)
T ss_pred eEEEEEEEEeecC---CCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHH-------------------hCCc--ccc
Confidence 5889999883221 137899999886 44579999999999999998873 1442 000
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhc-cccChhhhhhhhhccc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLEASK 201 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~-~~~~~~~l~~FLevS~ 201 (1100)
. ...+.+.+|. ||. +..+++ ..+.+.|+..||.||++||..+ .+.++..+.+||+..+
T Consensus 59 ~---------------~~~~~r~lP~---lP~-k~~~~~-~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~~ 117 (118)
T cd06887 59 D---------------INKENRIIPH---LPA-PKWFDG-QRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVRP 117 (118)
T ss_pred c---------------cCCCCCcCCC---CCC-CcccCc-chHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcCC
Confidence 0 0012345555 552 233333 3778888899999999998755 4689999999998754
No 57
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=98.56 E-value=2.1e-07 Score=90.95 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=64.7
Q ss_pred eeEEEEEE-Eeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccc
Q 001322 63 LLSYTIEV-QYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNH 138 (1100)
Q Consensus 63 ~~~YtIEl-~hG~f---kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 138 (1100)
+++|+|.+ +.|.| +|+|.|+|+||..||..|+. .... .++.++
T Consensus 18 yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~------------~~~~---~~~~~~------------------ 64 (114)
T cd07300 18 HVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLS------------DFSE---ELEDVV------------------ 64 (114)
T ss_pred eEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHH------------Hccc---cCCCCC------------------
Confidence 78999976 66765 89999999999999987763 1000 011001
Q ss_pred ccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 139 DESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 139 ~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
+|. +..++ ..+.+.+.||.+||.||+.++..+.++++..+.+||+..
T Consensus 65 --------------lP~-K~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 65 --------------FPK-KKLTGNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred --------------CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 221 22233 234566677889999999999999999999999999864
No 58
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=98.55 E-value=2.9e-07 Score=88.91 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=68.0
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
+|.|.+++-.... ...+++|+|+++ | .|+|.|+|+||..||.+|+. . .....+|+
T Consensus 5 ~i~Ip~~~~~~~~--~~~yvvY~I~~~-~--~~~v~rRyseF~~L~~~L~~------------~----~~~~~~p~---- 59 (106)
T cd06886 5 PISIPDYKHVEQN--GEKFVVYNIYMA-G--RQLCSRRYREFANLHQNLKK------------E----FPDFQFPK---- 59 (106)
T ss_pred eEecCCcceEcCC--CCcEEEEEEEEc-C--CEEEEechHHHHHHHHHHHH------------H----cCCCCCCC----
Confidence 4666665321111 125899999987 5 79999999999999998874 1 11111111
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
||. +..+.....+.+.||..||.||+.|+.++.++++..+.+||.
T Consensus 60 ----------------------------lP~-K~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 104 (106)
T cd06886 60 ----------------------------LPG-KWPFSLSEQQLDARRRGLEQYLEKVCSIRVIGESDIMQDFLS 104 (106)
T ss_pred ----------------------------CCC-CCcCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhc
Confidence 221 122222344566677899999999999999999999999984
No 59
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=98.53 E-value=3.1e-07 Score=91.47 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=39.0
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~ 95 (1100)
+++|.++.....+. ..+++|.|+++.+..+|+|.|+|+||..||.+|+.
T Consensus 2 ~i~Ip~~~~~~~~~--~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~ 50 (127)
T cd06874 2 KITIPRYVLRGQGK--DEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKL 50 (127)
T ss_pred EEEECCeEEecCCC--CcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHH
Confidence 56777765422222 24889999999999999999999999999998874
No 60
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=98.53 E-value=5.3e-07 Score=88.84 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=63.3
Q ss_pred ceeEEEEEEEeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccc
Q 001322 62 MLLSYTIEVQYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNH 138 (1100)
Q Consensus 62 ~~~~YtIEl~hG~f---kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~ 138 (1100)
.+++|.|+++.+.- .|+|.|+|+||..||.+|+. .+. ...+|+
T Consensus 32 ~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~fp----~~~lP~------------------ 77 (119)
T cd06869 32 HHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKK------------EFP----GKKLPK------------------ 77 (119)
T ss_pred ceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHH------------HCc----CCCCCC------------------
Confidence 37899999999987 99999999999999998873 111 111111
Q ss_pred ccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 139 DESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 139 ~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
||. +. . .+.++||..||.||+.|+..+.++++..+.+||.
T Consensus 78 --------------lP~-K~-~----~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~ 117 (119)
T cd06869 78 --------------LPH-KD-K----LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFLT 117 (119)
T ss_pred --------------CcC-Cc-h----hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhhC
Confidence 331 11 1 3456777899999999999999999999999985
No 61
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=98.51 E-value=9.3e-07 Score=87.04 Aligned_cols=112 Identities=19% Similarity=0.312 Sum_probs=77.4
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG-~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
.|+|+++|.--..+ .+.+|.|+++-. .-.|.|.|+|+||..||.+|+. .+|...
T Consensus 3 ~~~v~~~ekr~~~~---k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~-------------------~FP~ea--- 57 (119)
T cd06888 3 DVKVIDVEKRRAPS---KHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLD-------------------KFPIEG--- 57 (119)
T ss_pred eEEEEEEEEEecCC---CcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHH-------------------hCchhh---
Confidence 68899998833211 267999999876 3479999999999999998873 144100
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccCC--CCccHHHHHHHHHHHHHHHhhcc-ccChhhhhhhhhc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLEA 199 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~--~~~~~r~r~~LE~YL~~lL~~~~-~~~~~~l~~FLev 199 (1100)
.....+.|.+|. ||- +..+++. ..+.++|+..|+.||+.|+..+. +..+..+..||+.
T Consensus 58 --------------g~~~~~~r~lP~---lP~-k~~~g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 58 --------------GQKDPSQRIIPF---LPG-KILFRRSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred --------------ccCCCCccccCC---CCC-CcccCcchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 000112344555 553 2334432 34778888999999999998766 4689999999975
No 62
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=98.50 E-value=2.9e-07 Score=90.53 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=38.1
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~ 95 (1100)
+|.|.++.....+ ...+++|.|+++.+.-.|+|.|+|+||..||.+|+.
T Consensus 2 ~v~IPs~~~~g~~--~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~ 50 (118)
T cd07277 2 NVWIPSVFLRGKG--SDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKK 50 (118)
T ss_pred EEEcCcEEEecCC--CCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHH
Confidence 3556665532222 235899999999999999999999999999998874
No 63
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=98.50 E-value=4e-07 Score=88.66 Aligned_cols=107 Identities=21% Similarity=0.232 Sum_probs=68.5
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccc
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVV 125 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~ 125 (1100)
++|++......+ ....+++|+|+++- |+|.|+|+||..||.+|+. .+. ..-+|+..++.
T Consensus 2 ~~i~~~~~~~~~-~~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~~L~~------------~~p----~~~iPplP~K~ 60 (112)
T cd06867 2 IQIVDAGKSSEG-GSGSYIVYVIRLGG----SEVKRRYSEFESLRKNLTR------------LYP----TLIIPPIPEKH 60 (112)
T ss_pred cEEccCccccCC-CccCEEEEEEEeee----EEEEeccHHHHHHHHHHHH------------HCc----CCCcCCCCCcc
Confidence 567776653322 12348999999864 9999999999999998874 111 11111210000
Q ss_pred ccCccccccccccccccccCCCCCCCCCCCC-C-Cccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 126 QEDDEGDEIAVNHDESSKKRDVPANAALPVI-R-PALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-r-~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
.+-.. . ...+ ....+.+.||+.||.||+.++..+.++++..+.+||+.
T Consensus 61 --------------------------~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06867 61 --------------------------SLKDYAKKPSKAKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDP 111 (112)
T ss_pred --------------------------hhhhhccccccccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCC
Confidence 00000 0 0011 23455667778999999999999999999999999974
No 64
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=98.50 E-value=2.9e-07 Score=89.79 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=64.0
Q ss_pred CceeEEEEEEE----eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccc
Q 001322 61 PMLLSYTIEVQ----YKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (1100)
Q Consensus 61 ~~~~~YtIEl~----hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~ 136 (1100)
..+++|+|.+. ++.-.|+|.|+|+||..||.+|+. +... .++..+
T Consensus 16 ~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~------------~~~~---~~~~~~---------------- 64 (112)
T cd07301 16 SKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRR------------LFGG---EMAGVS---------------- 64 (112)
T ss_pred cCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHH------------HCCC---cCCCCC----------------
Confidence 34889999985 345679999999999999987763 1111 011001
Q ss_pred ccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 137 NHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 137 ~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
+|. +..++ .+..+.++||..||+||+.++..+.++++..+.+||.+
T Consensus 65 ----------------~P~-K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 65 ----------------FPR-KRLRKNFTAETIAKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred ----------------CCC-CcccCCCCHHHHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 221 12222 33456667788999999999999999999999999864
No 65
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=98.47 E-value=1e-06 Score=83.09 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=71.6
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEeee-eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYKQ-FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG~-fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
++|.+.+.... ....+++|.|+++++. -.|.|.|+|+||..||..|+. . .| .
T Consensus 2 i~I~~~~~~~~--~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~------------~-------~~--~---- 54 (106)
T cd06093 2 VSIPDYEKVKD--GGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKK------------K-------FP--G---- 54 (106)
T ss_pred EEeCCceEEcC--CCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHH------------H-------CC--C----
Confidence 55666544321 1234789999999998 999999999999999997773 0 11 0
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
..+|+ ||. +...+ ......+.|+..|+.||+.|+.++.+.++..+..||+
T Consensus 55 --------------------~~~p~---lP~-k~~~~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 55 --------------------VILPP---LPP-KKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred --------------------CccCC---CCC-CcccccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 11122 332 12222 2345556778899999999999999999999999986
No 66
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=98.46 E-value=6.5e-07 Score=88.33 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=66.2
Q ss_pred CceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..+++|+|+.+.+ .=+|+|.|+|+||..||.+|+. . .....+|+
T Consensus 21 ~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~----~p~~~iPp--------------- 69 (120)
T cd06865 21 PPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAE------------A----YRGAFVPP--------------- 69 (120)
T ss_pred CCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHH------------H----CCCCeeCC---------------
Confidence 4589999999876 3689999999999999998873 1 11111112
Q ss_pred cccccccccCCCCCCCCCCCCCCccc----CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALG----RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~----~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
||. ++.+. ....+.+.||+.||.||+.++.++.++++..+..||+.
T Consensus 70 -----------------lP~-K~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 70 -----------------RPD-KSVVESQVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred -----------------CcC-CccccccccCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 221 11111 24567777788999999999999999999999999974
No 67
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.45 E-value=9.9e-07 Score=104.36 Aligned_cols=145 Identities=22% Similarity=0.295 Sum_probs=99.5
Q ss_pred EEEEecHHHH---------HHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEech
Q 001322 365 AQWFVDGKAA---------FEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKE 435 (1100)
Q Consensus 365 v~~lvdG~~~---------f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~ 435 (1100)
++++.+|... -..+..+|.+|+++|+|+. .|+++ +..+.++|..++++||+|+|++.+.
T Consensus 253 ~~~~~~~P~~~~~~~~~~~~~~~~~~i~~A~~~i~i~~------pYf~~------~~~~~~al~~a~~~Gv~V~ii~~~~ 320 (438)
T COG1502 253 VQVLSSGPDKGLGSELIELNRLLLKAINSARESILIAT------PYFVP------DRELLAALKAAARRGVDVRIIIPSL 320 (438)
T ss_pred eEEEecCCccccchhhhhHHHHHHHHHHhhceEEEEEc------CCcCC------CHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 5666666543 3679999999999999963 37766 4788899999999999999998621
Q ss_pred --hhhHhhc-chhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCC
Q 001322 436 --VALALKI-NSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPP 512 (1100)
Q Consensus 436 --~~~~l~~-~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~ 512 (1100)
....... .....-..+ +..|++++.++.. +..|.|++|||++++++||.|+..--+
T Consensus 321 ~~~d~~~~~~~~~~~~~~l--~~~gv~i~~~~~g-------~~lH~K~~iiD~~~~~vGS~N~~~rS~------------ 379 (438)
T COG1502 321 GANDSAIVHAAYRAYLKEL--LEAGVKVYEYPGG-------AFLHSKVMIIDDRTVLVGSANLDPRSL------------ 379 (438)
T ss_pred CCCChHHHHHHHHHHHHHH--HHhCCEEEEecCC-------CcceeeEEEEcCCEEEEeCCcCCHhHH------------
Confidence 1111100 000000122 2478999887641 357999999999999999999941000
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCeEEEEEEEECh-HHHHHHHHHHHHHHhhh
Q 001322 513 LIWPGKDYYNPRESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGP-PCRDVARHFVQRWNYAK 576 (1100)
Q Consensus 513 ~~~pG~dY~n~r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~qrWn~~~ 576 (1100)
+.| -.+.+.|..+ .+.++.+.|...|....
T Consensus 380 -------~lN---------------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 380 -------RLN---------------------------FEVGLVIEDPELALKLRREFEADLARSK 410 (438)
T ss_pred -------HHh---------------------------hhheeEEeCHHHHHHHHHHHHHHHHHHh
Confidence 000 1467888887 78889999997776553
No 68
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.43 E-value=1.4e-06 Score=84.34 Aligned_cols=99 Identities=16% Similarity=0.358 Sum_probs=70.4
Q ss_pred EEEeeeee-cCCCCCCCceeEEEEEEEeeee---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 001322 46 ASIVSVSR-PDAGDISPMLLSYTIEVQYKQF---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDH 121 (1100)
Q Consensus 46 v~I~~ver-~~s~~~~~~~~~YtIEl~hG~f---kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~ 121 (1100)
|+|++++. ... + .+.+|.|+++...- +| |+|+|++|..||.+||. . +|+
T Consensus 2 ~~V~~f~Kr~~p-~---k~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~------------~-------Fp~--- 54 (109)
T cd07289 2 VSVFTYHKRYNP-D---KHYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSI------------L-------FPL--- 54 (109)
T ss_pred cEEeeEEEEEcC-C---CeEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHH------------H-------CCc---
Confidence 78899873 322 1 15699999999633 77 99999999999998884 1 442
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCCCCCCcccCC--CCccHHHHHHHHHHHHHHHhhcc-ccChhhhhhhhh
Q 001322 122 MAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLE 198 (1100)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~--~~~~~r~r~~LE~YL~~lL~~~~-~~~~~~l~~FLe 198 (1100)
..+|+ ||. +..+|++ ..+.++|+..|+.||+.||..+. +.++..+..||+
T Consensus 55 -----------------------~~lP~---lP~-k~~~grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 55 -----------------------WKLPG---FPN-KMVLGRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred -----------------------ccCCC---CCC-CeeeCCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 01222 332 2334443 35677888999999999998655 678999999986
No 69
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=98.42 E-value=1e-06 Score=85.85 Aligned_cols=103 Identities=14% Similarity=0.269 Sum_probs=70.7
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~ 120 (1100)
|.|.+.+.. ++....+++|+|+.+-. .-.|+|.|+|+||..||.+|+. .+... .+| +
T Consensus 3 i~V~dp~~~--~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~~~~~--~iP--~ 64 (112)
T cd06861 3 ITVGDPHKV--GDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQN------------NHPGV--IVP--P 64 (112)
T ss_pred EEEcCccee--cCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHH------------HCCCC--ccC--C
Confidence 445554443 23334589999998854 3489999999999999998763 00100 011 1
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCcccC-CCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~-~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
+|. ++.+++ ...+.+.||..||.||+.++..+.++++..+..||+.
T Consensus 65 --------------------------------lP~-K~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 65 --------------------------------PPE-KQSVGRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred --------------------------------CCC-cccccCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 221 223332 3456667778999999999999999999999999974
No 70
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.41 E-value=1.8e-06 Score=82.33 Aligned_cols=95 Identities=18% Similarity=0.300 Sum_probs=69.6
Q ss_pred cceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccc
Q 001322 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVS 291 (1100)
Q Consensus 212 gkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~ 291 (1100)
.|+|||.|+.. - ...|++||||+++++|.|.++..+..+..+|.+.. ..+.
T Consensus 3 ~k~G~L~Kkg~----------------~----~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~---------~~v~ 53 (100)
T cd01233 3 SKKGYLNFPEE----------------T----NSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLST---------ARVE 53 (100)
T ss_pred ceeEEEEeeCC----------------C----CCCcEEEEEEEECCEEEEEccCCCccEeeEEEecc---------cEEE
Confidence 38999988721 0 14799999999999999999877777777776652 1122
Q ss_pred cchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHhc
Q 001322 292 LATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
............+.|.|..++|++.|.|.|..++.+|+.+|+..
T Consensus 54 ~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 54 HSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred EccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhh
Confidence 11110001123578999999999999999999999999999764
No 71
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=98.41 E-value=1.2e-06 Score=86.95 Aligned_cols=116 Identities=13% Similarity=0.253 Sum_probs=70.9
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCC
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQ-NLGMG 119 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~h-----G~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~-~lp~~ 119 (1100)
+.|.+-+....+. ..+++|+|+.+. +.=.|+|.|+|+||..||.+|+. . +.+ .+-+|
T Consensus 3 i~V~dP~~~~~g~--~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~---~~~~g~~iP 65 (124)
T cd07282 3 IGVSDPEKVGDGM--NAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLAS------------K---YLHVGYIVP 65 (124)
T ss_pred EEEeCCeEecCCc--cCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHH------------h---CCCCCceeC
Confidence 4555554433321 358999999863 23379999999999999998874 0 100 01011
Q ss_pred CCccccccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 120 DHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
|-.++. +-....+...+. -...+.+.++||..||.||+.++..+.++++..+..||+.
T Consensus 66 plP~K~---------------------~~~~~~~~~~~~-~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 66 PAPEKS---------------------IVGMTKVKVGKE-DSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred CCCCCc---------------------cccccccccccc-cccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 210000 000000111010 0123456777889999999999999999999999999996
Q ss_pred c
Q 001322 200 S 200 (1100)
Q Consensus 200 S 200 (1100)
|
T Consensus 124 ~ 124 (124)
T cd07282 124 S 124 (124)
T ss_pred C
Confidence 5
No 72
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=98.39 E-value=1.2e-06 Score=85.28 Aligned_cols=102 Identities=15% Similarity=0.280 Sum_probs=70.0
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~ 120 (1100)
|.|.+.++.-++ ...+++|+|+++-+ .=+|.|.|+|+||..||.+|+. .+. ...+|+
T Consensus 3 ~~V~~p~~~~~~--~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~------------~~~----~~~~P~ 64 (114)
T cd06859 3 ISVTDPVKVGDG--MSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVE------------KYP----GRIVPP 64 (114)
T ss_pred EEEeCcceecCC--ccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHH------------HCC----CCEeCC
Confidence 566666653332 23589999999864 3479999999999999998873 100 011111
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCcccCC-CC--ccHHHHHHHHHHHHHHHhhccccChhhhhhhh
Q 001322 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ-HS--MSDRAKVAMQQYLNHFLGNMDIVNSREVCKFL 197 (1100)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~-~~--~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FL 197 (1100)
||. ++.+++. .. +.+.|+.+||.||+.++..+.++++..+..||
T Consensus 65 --------------------------------lP~-k~~~~~~~~~~~~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl 111 (114)
T cd06859 65 --------------------------------PPE-KQAVGRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDPDFRLFL 111 (114)
T ss_pred --------------------------------CCC-CcccCccCccHHHHHHHHHHHHHHHHHHhcChhhccCcHHHhhc
Confidence 221 2223322 12 55666789999999999999999999999999
Q ss_pred h
Q 001322 198 E 198 (1100)
Q Consensus 198 e 198 (1100)
+
T Consensus 112 ~ 112 (114)
T cd06859 112 E 112 (114)
T ss_pred C
Confidence 6
No 73
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=98.39 E-value=1.5e-06 Score=86.48 Aligned_cols=106 Identities=10% Similarity=0.183 Sum_probs=71.6
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
+|.|.+=++-...+-...+++|.|..+. -.|+|.|+|+||..||.+|+. .+. ..-+|+
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~------------~~p----~~~iPp---- 59 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH--TNVTVSRRYKHFDWLYERLVE------------KYS----CIAIPP---- 59 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec--CcEEEEEecHHHHHHHHHHHH------------HCC----CCCCCC----
Confidence 3555554443211111248999999876 479999999999999987773 111 111112
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhccc
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASK 201 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~ 201 (1100)
||. +..++ ....+.+.||..||.||+.++.++.++++..+.+||+.+.
T Consensus 60 ----------------------------lP~-K~~~~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 60 ----------------------------LPE-KQVTGRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTD 108 (125)
T ss_pred ----------------------------CCC-CccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCcc
Confidence 221 22223 2345666778899999999999999999999999999874
No 74
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.38 E-value=2e-06 Score=82.94 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=68.1
Q ss_pred ceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCC--CCccEEEEEcCCCCCCCCCCCcc
Q 001322 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFD--TKPMDIIVFDVLPASDGNGEGRV 290 (1100)
Q Consensus 213 keg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~--~~~~~v~lfD~~~~~~~~~~~~~ 290 (1100)
|||||.||...+. .++...|++||||++++.|.|.+++.+ ..++.+|-+..-.. +
T Consensus 2 k~g~l~Kr~~~~~---------------~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~--------v 58 (106)
T cd01238 2 LESILVKRSQQKK---------------KTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKC--------V 58 (106)
T ss_pred cceeeeeeccCCC---------------CCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceE--------E
Confidence 8999999853211 123357999999999999999987755 36666665543110 1
Q ss_pred ccchhhcc---cCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHh
Q 001322 291 SLATEVKE---RNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAIND 334 (1100)
Q Consensus 291 ~~~~~~~~---~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~ 334 (1100)
.....-.. .....+.|.|....|.+.+.|.|..+..+|+.+|+.
T Consensus 59 e~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 59 ETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred EEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence 10000000 001357899999999999999999999999999975
No 75
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=98.37 E-value=1.4e-06 Score=87.10 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred eEEEeeeeecCCCCC---CCceeEEEEEEEeee---------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001322 45 KASIVSVSRPDAGDI---SPMLLSYTIEVQYKQ---------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEW 112 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~---~~~~~~YtIEl~hG~---------fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~ 112 (1100)
++.|++.|+...+.. ...+++|+|+++-.. -.|+|.|+|+||..||.+|+. .++
T Consensus 2 ~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~~p-- 67 (129)
T cd06864 2 EITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVV------------TYP-- 67 (129)
T ss_pred eeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHH------------HCC--
Confidence 367777777544322 234899999999543 468899999999999998773 111
Q ss_pred HhhCCCCCCccccccCccccccccccccccccCCCCCCCCCCCCCC-ccc-CCCCccHHHHHHHHHHHHHHHhhccccCh
Q 001322 113 LQNLGMGDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRP-ALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNS 190 (1100)
Q Consensus 113 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~-~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~ 190 (1100)
...+|+..++ ..+-..+. ..+ ....+.+.||..||.||+.++..+.++++
T Consensus 68 --~~~iPplP~K--------------------------~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s 119 (129)
T cd06864 68 --YVIVPPLPEK--------------------------RAMFMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQD 119 (129)
T ss_pred --CCCCCCCCCc--------------------------ceecccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcC
Confidence 1111121000 00000000 011 13456667788999999999999999999
Q ss_pred hhhhhhhh
Q 001322 191 REVCKFLE 198 (1100)
Q Consensus 191 ~~l~~FLe 198 (1100)
..+.+||.
T Consensus 120 ~~l~~FL~ 127 (129)
T cd06864 120 KIFLEFLT 127 (129)
T ss_pred cHHHHhcC
Confidence 99999985
No 76
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=98.35 E-value=1.2e-06 Score=87.73 Aligned_cols=88 Identities=18% Similarity=0.347 Sum_probs=65.7
Q ss_pred eeEEEEEEEeee-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccccc
Q 001322 63 LLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVN 137 (1100)
Q Consensus 63 ~~~YtIEl~hG~-----fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~ 137 (1100)
.+.|+|++..+. -.|+|.|+|+||..||.+|+. ..... .+| +
T Consensus 44 ~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~------------~~p~~--~lP--p----------------- 90 (138)
T cd06879 44 DKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKK------------LFPKK--KLP--A----------------- 90 (138)
T ss_pred eEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHH------------HCCCC--cCC--C-----------------
Confidence 579999999993 599999999999999988774 10000 022 1
Q ss_pred cccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 138 HDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 138 ~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
+|. +..++ ....+.++||..||.||++|+.++.++++..+.+|||+
T Consensus 91 ---------------lPp-K~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLel 137 (138)
T cd06879 91 ---------------APP-KGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLEL 137 (138)
T ss_pred ---------------CCC-cccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhCC
Confidence 221 22233 23466777788999999999999999999999999986
No 77
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.34 E-value=3.8e-07 Score=67.11 Aligned_cols=26 Identities=58% Similarity=0.875 Sum_probs=24.6
Q ss_pred eeeeeeEEEEeCcEEEEcccccCcCc
Q 001322 899 VYVHSKVMIIDDSIALIGSANINDRS 924 (1100)
Q Consensus 899 iyvHSKlmIVDD~~~iIGSANiN~RS 924 (1100)
.++|+|+||+|+++++|||+|++.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999987
No 78
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=98.34 E-value=2.2e-06 Score=83.77 Aligned_cols=90 Identities=16% Similarity=0.284 Sum_probs=65.5
Q ss_pred CceeEEEEEEEeee-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~hG~-----fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..+++|+|+++.+. -.|+|.|+|+||..||.+|+. .++ ...+++
T Consensus 16 ~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~------------~~~----~~~~p~--------------- 64 (113)
T cd06898 16 GSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQK------------NAL----LIQLPS--------------- 64 (113)
T ss_pred CCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHH------------HCC----CCcCCC---------------
Confidence 35899999998664 368999999999999987773 000 111111
Q ss_pred cccccccccCCCCCCCCCCCCCCcccC-C-CCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALGR-Q-HSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~~-~-~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
||. ++.+++ . +.+.+.||..||.||+.++.++.+.++..+..||+.
T Consensus 65 -----------------lP~-K~~~~~~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 65 -----------------LPP-KNLFGRFNNEGFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred -----------------CCC-CccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 221 223332 2 466677788999999999999999999999999974
No 79
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=98.34 E-value=1.8e-06 Score=85.18 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=63.6
Q ss_pred CceeEEEEEEEee--e-----------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccc
Q 001322 61 PMLLSYTIEVQYK--Q-----------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQE 127 (1100)
Q Consensus 61 ~~~~~YtIEl~hG--~-----------fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~ 127 (1100)
..+++|+|.+.-. . ..|+|.|+|+||..||..|+. + .....+|+
T Consensus 18 ~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~----~p~~~iPp------- 74 (120)
T cd06868 18 SGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSE------------K----YPGTILPP------- 74 (120)
T ss_pred CCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHH------------H----CCCCCCCC-------
Confidence 3489999986532 1 379999999999999997773 1 10111111
Q ss_pred CccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 128 DDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
||. +..++ .+.+.++||..||.||+.++.++.++++..+.+||.+
T Consensus 75 -------------------------lP~-K~~~~-~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 75 -------------------------LPR-KALFV-SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred -------------------------CCC-CcccC-CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 332 22233 4455667778999999999999999999999999975
No 80
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=98.32 E-value=1.8e-06 Score=85.68 Aligned_cols=112 Identities=15% Similarity=0.266 Sum_probs=71.1
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~ 120 (1100)
+.|.+.+....+. ..+++|+|..+-+ .=.|+|.|+|+||..||.+|+. .+.. ....+||
T Consensus 3 i~V~~p~~~~~~~--~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~~~~--~~~~iPp 66 (124)
T cd07281 3 VSITDPEKIGDGM--NAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSE------------KHSQ--NGFIVPP 66 (124)
T ss_pred EEEcCCeEeeCCc--CCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHH------------hCCC--CCcEeCC
Confidence 5566655533322 3589999998865 2489999999999999998873 1100 0111112
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccc----CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhh
Q 001322 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG----RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (1100)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~----~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~F 196 (1100)
-.++ ..+...+..++ ....+.++||..||.||+.|+..+.++++..+..|
T Consensus 67 ~P~K--------------------------~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~F 120 (124)
T cd07281 67 PPEK--------------------------SLIGMTKVKVGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREF 120 (124)
T ss_pred CCCc--------------------------cccccchhhccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHH
Confidence 1000 00000000011 23456677788999999999999999999999999
Q ss_pred hhc
Q 001322 197 LEA 199 (1100)
Q Consensus 197 Lev 199 (1100)
|+.
T Consensus 121 L~~ 123 (124)
T cd07281 121 LEK 123 (124)
T ss_pred hCC
Confidence 974
No 81
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=98.30 E-value=2.3e-06 Score=84.20 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=65.2
Q ss_pred eeEEEEEEEeee-------eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 63 LLSYTIEVQYKQ-------FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 63 ~~~YtIEl~hG~-------fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
+++|+|+.+.+. -.|+|.|+|+||..||.+|+. .++..+ .-+
T Consensus 17 yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~------------~~~~~~-~~~------------------ 65 (118)
T cd07287 17 YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQ------------IHKNLC-RQS------------------ 65 (118)
T ss_pred eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHH------------hccccc-cCC------------------
Confidence 899999987664 479999999999999998873 122110 000
Q ss_pred cccccccccCCCCCCCCCCCCCCcccC-CCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~~-~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
.-+|. +|. +..+++ ...+.++||..||+||+.+...+.++++..+.+||+
T Consensus 66 ---------~~~Pp---~p~-k~~~g~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 116 (118)
T cd07287 66 ---------ELFPP---FAK-AKVFGRFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFK 116 (118)
T ss_pred ---------cccCC---CCC-ceeecCCCHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhc
Confidence 00111 221 223443 456777888999999999998898999999999996
No 82
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.29 E-value=5.8e-06 Score=77.86 Aligned_cols=94 Identities=23% Similarity=0.334 Sum_probs=71.4
Q ss_pred ceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCcccc
Q 001322 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (1100)
Q Consensus 213 keg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~ 292 (1100)
.||+|.++... | +.....|++|||||+++.|.|.+++.+..+..+|.+.. ..+..
T Consensus 2 ~~GwL~kk~~~---~-------------g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~---------~~v~~ 56 (96)
T cd01260 2 CDGWLWKRKKP---G-------------GFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSG---------FTIES 56 (96)
T ss_pred ceeEEEEecCC---C-------------CccccCceeEEEEEECCEEEEECCCCCCccceEEEccC---------CEEEE
Confidence 69999987421 1 00125799999999999999999988888988887764 12322
Q ss_pred chhhcccCCcceeEEEEeCc-eEEEEEeCchhhHHHHHHHHHhc
Q 001322 293 ATEVKERNPLRHAFKVTCGV-RSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~~~-r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
..+ ....+.|.|.+.+ |.+.|.|.|...+.+|+.+|..+
T Consensus 57 ~~~----~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 57 AKE----VKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred chh----cCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 221 1246889998777 99999999999999999999753
No 83
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=98.29 E-value=2.3e-06 Score=85.88 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=64.5
Q ss_pred CceeEEEEEEEee----------------eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 61 PMLLSYTIEVQYK----------------QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 61 ~~~~~YtIEl~hG----------------~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
..+++|+|..+=. .=.|+|.|||+||..||.+|+... ..+..+ ..+.|+
T Consensus 19 ~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~----------~~~~~~-~~~~P~---- 83 (132)
T cd06893 19 HPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENP----------KFRKIM-NVKGPP---- 83 (132)
T ss_pred CCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHcc----------Cccccc-ccCCCC----
Confidence 3589999986411 136999999999999999887410 001110 001111
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
..+|. +| .+ .+..+.+.||..||.||+.|+.++.++++..+.+||.+
T Consensus 84 --------------------k~~p~---lp-----~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 84 --------------------KRLFD---LP-----FGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred --------------------ccCCC---CC-----CCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 11111 22 22 23567777889999999999999999999999999986
No 84
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=98.28 E-value=2.7e-06 Score=81.91 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=61.3
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccccccccc
Q 001322 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDES 141 (1100)
Q Consensus 62 ~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1100)
.+++|+|+++ |. |.+.|+|+||..||.+|+. + .....+++
T Consensus 17 ~y~~Y~I~v~-~~--~~~~rRYseF~~L~~~L~~------------~----~~~~~~p~--------------------- 56 (104)
T cd06885 17 TYVAYNIHIN-GV--LHCSVRYSQLHGLNEQLKK------------E----FGNRKLPP--------------------- 56 (104)
T ss_pred cEEEEEEEEC-Cc--EEEEechHHHHHHHHHHHH------------H----cCCCCCCC---------------------
Confidence 4889999986 65 5677899999999987773 1 10011111
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 142 SKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 142 ~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
||. +..++....+.+.||..||.||+.|+..+.++.+..+.+||..
T Consensus 57 -----------lP~-K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 57 -----------FPP-KKLLPLTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred -----------CCC-CccccCCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 221 2222233356667788999999999999999999999999964
No 85
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.28 E-value=6e-06 Score=94.96 Aligned_cols=152 Identities=18% Similarity=0.303 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhhHHHhh
Q 001322 373 AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLL 452 (1100)
Q Consensus 373 ~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k~~L~ 452 (1100)
.-.+||++.|..|++.|+|+-=.-.|..-...| ..-|.|+++|.+||-|||+||+|+-......-.+ -.|. +.|.
T Consensus 276 ~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~---~~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m-~~~L-~SLq 350 (456)
T KOG3603|consen 276 WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN---HRFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSM-FRFL-RSLQ 350 (456)
T ss_pred hhHHHHHHHHHHHhhheeeeehhccchheeecC---cchhhhhHHHHHHhhcceEEEEEEeccCCCCchH-HHHH-HHHH
Confidence 357999999999999999965444554322232 3456999999999999999999984321100000 0111 2333
Q ss_pred cc-----CCCeEEEEc--CCC-cccCcccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 453 SI-----HENVRVLRY--PDH-FASGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPR 524 (1100)
Q Consensus 453 ~l-----~~nI~V~r~--p~~-~~~~~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r 524 (1100)
.+ +.+|+|..+ |.. ....++...+|.|.+|-+ +.||+|.-|.+ .||+-.
T Consensus 351 ~l~~~~~~~~iqvk~f~VP~~~~~~ip~~Rv~HnKymVTe-~aayIGTSNws---------------------~dYf~~- 407 (456)
T KOG3603|consen 351 DLSDPLENGSIQVKFFIVPQTNIEKIPFARVNHNKYMVTE-SAAYIGTSNWS---------------------GDYFTS- 407 (456)
T ss_pred HhcCccccCceEEEEEEeCCCccccCchhhhccceeEEee-cceeeeccCCC---------------------ccceec-
Confidence 32 345676655 532 122345568999999986 68899999984 456531
Q ss_pred CCCCCCccccccccccCCCCCCCCeEEEEEEE-----EChHHHHHHHHHHHHHHhhh
Q 001322 525 ESEPNSWEDTMRDELDRGKYPRMPWHDIHCAL-----WGPPCRDVARHFVQRWNYAK 576 (1100)
Q Consensus 525 ~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v-----~Gpaa~dl~~~F~qrWn~~~ 576 (1100)
+. -+++.| .|+++.+|...|..+|+...
T Consensus 408 ------------------Ta------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 408 ------------------TA------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred ------------------cC------ceEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 11 134444 36799999999999998653
No 86
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=98.23 E-value=5.6e-06 Score=81.40 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=68.8
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGD 120 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~ 120 (1100)
|.|.+-+....+ ....++.|+|+++-+ .-.|+|.|+|+||..||.+|+. .+. ..-+|+
T Consensus 3 i~V~dP~~~~~~-~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~------------~~p----~~~iPp 65 (118)
T cd06863 3 CLVSDPQKELDG-SSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSN------------DFP----ACVVPP 65 (118)
T ss_pred EEEeCcccccCC-CccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHH------------HCc----CCcCCC
Confidence 445554443321 123489999998753 2479999999999999998773 111 111112
Q ss_pred CccccccCccccccccccccccccCCCCCCCCCCCCCCccc--CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 121 HMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALG--RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~--~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
- |....+. ...+ ..+.+.++|++.||.||+.++.++.++++..+..||+
T Consensus 66 l--------------------------P~K~~~~---~~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~ 116 (118)
T cd06863 66 L--------------------------PDKHRLE---YITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLE 116 (118)
T ss_pred C--------------------------CCccccc---cccccCCCHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcC
Confidence 0 1100000 0011 1234556677899999999999999999999999997
Q ss_pred cc
Q 001322 199 AS 200 (1100)
Q Consensus 199 vS 200 (1100)
-|
T Consensus 117 s~ 118 (118)
T cd06863 117 SS 118 (118)
T ss_pred CC
Confidence 54
No 87
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=98.21 E-value=6.6e-06 Score=79.40 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=63.2
Q ss_pred ceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccccccccc
Q 001322 62 MLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDES 141 (1100)
Q Consensus 62 ~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1100)
.+++|.|+.+- -.|+|.|+|+||..||.+|+. .+. ...+|+
T Consensus 17 ~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~~L~~------------~~p----~~~iP~--------------------- 57 (105)
T cd06866 17 KHVEYEVSSKR--FKSTVYRRYSDFVWLHEYLLK------------RYP----YRMVPA--------------------- 57 (105)
T ss_pred CCEEEEEEEec--CCEEEEEEhHHHHHHHHHHHH------------HCC----CCcCCC---------------------
Confidence 57899999773 579999999999999998873 111 011111
Q ss_pred cccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 142 SKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 142 ~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
||. +..++ ..+.+.+.|+..||+||+.++..+.++++..+..||..
T Consensus 58 -----------lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 58 -----------LPP-KRIGGSADREFLEARRRGLSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred -----------CCC-CccccCCCHHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcCC
Confidence 331 22333 23455667778999999999999999999999999864
No 88
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=98.20 E-value=5.2e-06 Score=81.76 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=64.9
Q ss_pred eeEEEEEEEee-------eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 63 LLSYTIEVQYK-------QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 63 ~~~YtIEl~hG-------~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
+++|.|....+ .-.|+|.|+|+||..||.+|.. .++..+....+
T Consensus 17 yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~------------~~~~~~~~~~~----------------- 67 (118)
T cd07288 17 YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAY------------THRNLFRRQEE----------------- 67 (118)
T ss_pred cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHH------------hcccccccCCc-----------------
Confidence 78999998765 2589999999999999998772 12221111100
Q ss_pred cccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
+|. +|. +..++ .++.+.++||..||+||+.+..++.++++..+.+||+
T Consensus 68 -----------~Pp---~P~-K~~~g~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~ 116 (118)
T cd07288 68 -----------FPP---FPR-AQVFGRFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFR 116 (118)
T ss_pred -----------cCC---CCC-ceeeccCCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHh
Confidence 111 231 22233 2455677778899999999999999999999999997
No 89
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=98.16 E-value=6.6e-06 Score=81.60 Aligned_cols=99 Identities=14% Similarity=0.247 Sum_probs=65.0
Q ss_pred CceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..+++|+|+.+-+ .-.|+|.|+|+||..||.+|+.. ....+||-.++.
T Consensus 17 ~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-----------------~~~~iPpLP~K~---------- 69 (123)
T cd06894 17 KRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-----------------SKIVVPPLPGKA---------- 69 (123)
T ss_pred cCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-----------------CCCccCCCCCCc----------
Confidence 4589999998733 35799999999999999877630 011111200000
Q ss_pred cccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
+ ...++. +...+ ..+.+.++||+.||.||+.++.++.++++..+..||+-.
T Consensus 70 -----------~--~~~~~~-~~~~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 70 -----------L--KRQLPF-RGDDGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred -----------e--eccccc-ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 0 000110 00011 235566777889999999999999999999999999854
No 90
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=98.16 E-value=8.9e-06 Score=79.90 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=63.9
Q ss_pred CceeEEEEEEE-----eeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQ-----YKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~-----hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..+++|+|... +..-.|+|.|+|+||..||.+|+. .+ ....+|+
T Consensus 17 ~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~------------~~----~~~~iPp--------------- 65 (116)
T cd07295 17 GMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILER------------ES----PRVMIPP--------------- 65 (116)
T ss_pred CCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHH------------HC----CCCccCC---------------
Confidence 45899999876 334579999999999999998873 11 1111112
Q ss_pred cccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhcccc-Chhhhhhhhhcc
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIV-NSREVCKFLEAS 200 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~-~~~~l~~FLevS 200 (1100)
||. +..++ ..+.+.++||..||.||+.++.++.++ ++..+.+||+..
T Consensus 66 -----------------lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 66 -----------------LPG-KIFTNRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred -----------------CCC-CccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 221 11122 234566777889999999999998887 688999999854
No 91
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.15 E-value=1.3e-05 Score=77.36 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=56.8
Q ss_pred CCCceEEEEEcCCeEEEe--eCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCch
Q 001322 245 DNWQKVWAVLKPGFLALL--ADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~--~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~ 322 (1100)
.+|++||||+++..++|. +++.+..+..+|-+..- ..|.-+. +.++..++|.|.+.+|...|.|.|.
T Consensus 22 K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~--------~~V~~~~---~~~~~~~~f~I~tp~R~f~l~Aete 90 (104)
T cd01236 22 KRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQC--------TDVVDAE---ARTGQKFSICILTPDKEHFIKAETK 90 (104)
T ss_pred ccccceEEEEeCCCEEEEeeCCCCCcccceEEEccce--------EEEeecc---cccCCccEEEEECCCceEEEEeCCH
Confidence 689999999997655555 33335577777655431 1222121 1233468999999999999999999
Q ss_pred hhHHHHHHHHHh
Q 001322 323 AKVRDWVAAIND 334 (1100)
Q Consensus 323 ~~~~~w~~~i~~ 334 (1100)
.+..+|+.+|..
T Consensus 91 ~E~~~Wi~~l~~ 102 (104)
T cd01236 91 EEISWWLNMLMV 102 (104)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 92
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=98.15 E-value=7.2e-06 Score=81.36 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=64.7
Q ss_pred CceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..+++|+|+.+-+ .-.|+|.|+|+||..||..|+. .. ...+||-.++.
T Consensus 17 ~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~-------------~~----~~~iPpLP~K~---------- 69 (123)
T cd07293 17 GRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELER-------------ES----KVVVPPLPGKA---------- 69 (123)
T ss_pred cCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHh-------------cc----CCccCCCCCCc----------
Confidence 4589999998854 2489999999999999987763 00 11121210000
Q ss_pred cccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 136 VNHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
+ ...++. +...+ ..+.+.++||..||.||+.++.++.++++..+..||+-
T Consensus 70 -----------~--~~~~~~-~~~~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~ 120 (123)
T cd07293 70 -----------L--FRQLPF-RGDDGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQD 120 (123)
T ss_pred -----------h--hhhccc-ccccCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCC
Confidence 0 000110 00111 23556777788999999999999999999999999974
No 93
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.14 E-value=1.4e-05 Score=75.62 Aligned_cols=77 Identities=17% Similarity=0.352 Sum_probs=60.6
Q ss_pred CCCceEEEEEcC--CeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCch
Q 001322 245 DNWQKVWAVLKP--GFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (1100)
Q Consensus 245 ~~w~krW~vvk~--s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~ 322 (1100)
..|++||||+++ .+|.|.+++.+..++.+|-+... .+.. . .. ..++.|.|.+++|...|.|.|.
T Consensus 15 K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~---------~~~~-~---~~-~~~~~F~i~t~~r~y~l~A~s~ 80 (95)
T cd01265 15 RGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGA---------AFTY-D---PR-EEKGRFEIHSNNEVIALKASSD 80 (95)
T ss_pred cCceeEEEEEcCCCcEEEEECCCCcccccceEECCcc---------EEEc-C---CC-CCCCEEEEEcCCcEEEEECCCH
Confidence 479999999984 58999999988888888866531 1110 0 11 1256899999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 001322 323 AKVRDWVAAINDA 335 (1100)
Q Consensus 323 ~~~~~w~~~i~~~ 335 (1100)
..+.+|+.+|+..
T Consensus 81 ~e~~~Wi~al~~~ 93 (95)
T cd01265 81 KQMNYWLQALQSK 93 (95)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 94
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=98.12 E-value=1.1e-05 Score=81.00 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=67.3
Q ss_pred ceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccc
Q 001322 62 MLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (1100)
Q Consensus 62 ~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~ 136 (1100)
.+++|+|+.+-+ .-.|+|.|+|+||..||.+|.. . ....|||..++.
T Consensus 20 ~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~-------------~----~g~~iPpLP~K~----------- 71 (132)
T cd07294 20 RFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER-------------D----SKIVVPPLPGKA----------- 71 (132)
T ss_pred CEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHH-------------c----CCCccCCCCCCc-----------
Confidence 489999998744 3479999999999999987763 0 011122210000
Q ss_pred ccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhccccC
Q 001322 137 NHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKLS 203 (1100)
Q Consensus 137 ~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~s 203 (1100)
+.+ .++. ....+ ..+.+.+.||..||.||+.++..+.++++..+..||+-+.++
T Consensus 72 ----------~~~--~~~~-~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~~ 126 (132)
T cd07294 72 ----------LKR--QLPF-RGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETID 126 (132)
T ss_pred ----------eec--cccc-cccccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCcC
Confidence 000 0000 00011 234566777889999999999999999999999999999886
No 95
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.09 E-value=2.6e-05 Score=72.05 Aligned_cols=94 Identities=22% Similarity=0.393 Sum_probs=70.4
Q ss_pred ceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCC---CCCccEEEEEcCCCCCCCCCCCc
Q 001322 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPF---DTKPMDIIVFDVLPASDGNGEGR 289 (1100)
Q Consensus 213 keg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~---~~~~~~v~lfD~~~~~~~~~~~~ 289 (1100)
+||||.+++. . ...|++|||+|++++|.|.+++. ...+..+|-++.. .
T Consensus 3 ~~G~L~~~~~---------------~-----~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~---------~ 53 (104)
T PF00169_consen 3 KEGWLLKKSS---------------S-----RKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC---------T 53 (104)
T ss_dssp EEEEEEEEES---------------S-----SSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE---------E
T ss_pred EEEEEEEECC---------------C-----CCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc---------e
Confidence 7999998851 0 15799999999999999999876 4567777766532 1
Q ss_pred cccchhh--cccCCcceeEEEEeCce-EEEEEeCchhhHHHHHHHHHhc
Q 001322 290 VSLATEV--KERNPLRHAFKVTCGVR-SIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 290 ~~~~~~~--~~~~~~~~~~~i~~~~r-~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
+...... .......+.|.|.+..+ ++.|.|.|.....+|+.+|+.+
T Consensus 54 v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~ 102 (104)
T PF00169_consen 54 VRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKA 102 (104)
T ss_dssp EEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 2111110 01235679999999987 9999999999999999999875
No 96
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=98.09 E-value=1e-05 Score=80.36 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=67.5
Q ss_pred CceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccc
Q 001322 61 PMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (1100)
Q Consensus 61 ~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 140 (1100)
..++.|+|..+.+ .|+|.|+|+||..||..|.. ++. -.+++||
T Consensus 18 ~~Yv~Y~I~~~~~--~~~V~RRYsDF~~L~~~L~~------------~~~---~~i~vPp-------------------- 60 (126)
T cd07285 18 KSYIEYQLTPTNT--NRSVNHRYKHFDWLYERLLV------------KFG---LAIPIPS-------------------- 60 (126)
T ss_pred cCeEEEEEEeccC--CeEeeCCccHHHHHHHHHHH------------hcC---CCcccCC--------------------
Confidence 3589999998866 58999999999999987763 100 0122222
Q ss_pred ccccCCCCCCCCCCCCCCcccC-CCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcccc
Q 001322 141 SSKKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKL 202 (1100)
Q Consensus 141 ~~~~~~~p~~~~~~~~r~~l~~-~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~ 202 (1100)
||- +..+++ .+.+.++|+..||.||+.++.++.++.+..+..||+++.-
T Consensus 61 ------------lP~-K~~~g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 61 ------------LPD-KQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred ------------CCC-ccccCCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence 221 222332 4566777788999999999999999999999999999764
No 97
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=98.07 E-value=4.4e-05 Score=75.26 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=77.2
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMA 123 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG-~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~ 123 (1100)
.|+.++++.+.. +.+|-|+++.- .-+|.|+|+|.||..||.+|+. .+|+..
T Consensus 7 ~v~~~g~~k~~~------h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~-------------------~FP~Ea--- 58 (121)
T cd06889 7 DVQGVGVMQKRR------HKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKE-------------------KFPVEA--- 58 (121)
T ss_pred EEEEEeeecccc------eeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHH-------------------HCCccc---
Confidence 688888888444 66888888765 5789999999999999998873 266311
Q ss_pred ccccCccccccccccccccccCCCCCCCCCCCCCCcccCC-CC--ccHHHHHHHHHHHHHHHhhcc-ccChhhhhhhhhc
Q 001322 124 VVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQ-HS--MSDRAKVAMQQYLNHFLGNMD-IVNSREVCKFLEA 199 (1100)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~-~~--~~~r~r~~LE~YL~~lL~~~~-~~~~~~l~~FLev 199 (1100)
.....+.|-+|. ||. +..+++. .. .+..|+..|+.|+++||..+. +..+..+..||+.
T Consensus 59 --------------G~~~~~~riLP~---lP~-~~~~~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 59 --------------GLLRSSDRVLPK---FKD-APSLGSLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred --------------CCCCCCCcccCC---CCC-CcccCCcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 001123466677 542 1223433 22 466778899999999998765 5799999999975
No 98
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=98.06 E-value=1.4e-05 Score=79.48 Aligned_cols=89 Identities=11% Similarity=0.234 Sum_probs=65.4
Q ss_pred CceeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccc
Q 001322 61 PMLLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (1100)
Q Consensus 61 ~~~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 140 (1100)
..+++|+|...++. |.|.|+|+||..||.+|.. .++ ..-|||
T Consensus 18 ~~Yv~Y~I~~~~~~--~~V~RRYsDF~~L~~~L~~------------~~p----~~~IPp-------------------- 59 (127)
T cd07286 18 KSYISYKLVPSHTG--LQVHRRYKHFDWLYARLAE------------KFP----VISVPH-------------------- 59 (127)
T ss_pred cCEEEEEEEEecCc--eEEECCCcHHHHHHHHHHH------------HCC----CcEeCC--------------------
Confidence 35899999987764 8999999999999987763 111 110111
Q ss_pred ccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 141 SSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 141 ~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
||. +..++ ..+.+.++|+..||.||+.++.++.++.+..+..||+.+
T Consensus 60 ------------LP~-K~~~g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 60 ------------IPE-KQATGRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred ------------CcC-CCcCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 221 22233 234566777889999999999999999999999999987
No 99
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=98.05 E-value=1.8e-05 Score=76.68 Aligned_cols=87 Identities=20% Similarity=0.348 Sum_probs=63.6
Q ss_pred eeEEEEEEEeeee--EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccc
Q 001322 63 LLSYTIEVQYKQF--KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (1100)
Q Consensus 63 ~~~YtIEl~hG~f--kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 140 (1100)
+.+|.|+++-..- .|.|.|+|+||..||.+||. .+|. .
T Consensus 16 ~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~-------------------~FP~-~-------------------- 55 (109)
T cd07290 16 GYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRL-------------------LFPS-S-------------------- 55 (109)
T ss_pred cEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHH-------------------HCcc-c--------------------
Confidence 6789999988743 59999999999999998884 1331 0
Q ss_pred ccccCCCCCCCCCCCCCCcccCC--CCccHHHHHHHHHHHHHHHhh-ccccChhhhhhhhh
Q 001322 141 SSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGN-MDIVNSREVCKFLE 198 (1100)
Q Consensus 141 ~~~~~~~p~~~~~~~~r~~l~~~--~~~~~r~r~~LE~YL~~lL~~-~~~~~~~~l~~FLe 198 (1100)
.+|+ ||. +.-+++. +.+.++|+..|+.||+.||.. ..+.++..+..||+
T Consensus 56 -----~lP~---LP~-k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 56 -----KLPS---FPS-RFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred -----cCCC---CCC-CcccCccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 1122 332 2334443 467788889999999999875 45789999999986
No 100
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=98.05 E-value=1.6e-05 Score=78.00 Aligned_cols=89 Identities=12% Similarity=0.237 Sum_probs=63.2
Q ss_pred CceeEEEEEEEe-----eeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQY-----KQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~h-----G~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..+++|+|+.+. +.-.|.|.|+|+||..||.+|.. .+. ..-+||
T Consensus 16 ~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~------------~~p----~~~iPp--------------- 64 (116)
T cd06860 16 ETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEE------------SHP----THIIPP--------------- 64 (116)
T ss_pred cCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHH------------HCC----CCccCC---------------
Confidence 458999998874 34599999999999999997773 111 111112
Q ss_pred cccccccccCCCCCCCCCCCCCCc----cc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 136 VNHDESSKKRDVPANAALPVIRPA----LG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~~r~~----l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
||. ++. ++ ..+.+.+.|++.||.||+.++..+.++++..+..||.
T Consensus 65 -----------------LP~-K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt 114 (116)
T cd06860 65 -----------------LPE-KHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLT 114 (116)
T ss_pred -----------------CCC-cchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 221 111 12 1234566777899999999999999999999999985
No 101
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.04 E-value=2.9e-05 Score=74.41 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=59.3
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCcc-EEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchh
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPM-DIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGA 323 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~-~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~ 323 (1100)
.+|++|||+++++.|.|.++.....+. .+|-+..-. .+..+.+-+......+.|.|.+.+|+..|.+.|..
T Consensus 17 K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~--------sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~ 88 (101)
T cd01264 17 KRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIR--------SVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEK 88 (101)
T ss_pred ecceeEEEEEeCCEEEEEeccCccCCCCceEEcccce--------EEeeccccccccccCcEEEEEcCCceEEEEeCCHH
Confidence 589999999999999999876444333 555554321 12211110011123689999999999999999999
Q ss_pred hHHHHHHHHHhc
Q 001322 324 KVRDWVAAINDA 335 (1100)
Q Consensus 324 ~~~~w~~~i~~~ 335 (1100)
+...|.++|..+
T Consensus 89 e~e~WI~~i~~a 100 (101)
T cd01264 89 NAEEWLQCLNIA 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 102
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.00 E-value=5e-05 Score=69.84 Aligned_cols=75 Identities=25% Similarity=0.501 Sum_probs=59.3
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCC--CccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc-eEEEEEeCc
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDT--KPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTRT 321 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~--~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~~ 321 (1100)
..|++|||+++++.|.|.++..+. .+...+.++.. .+.. .....+.|.|.+.+ +.+.|.+.+
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~---------~~~~------~~~~~~~F~i~~~~~~~~~~~a~s 77 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGA---------VISE------DDSDDKCFTIDTGGDKTLHLRANS 77 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCCCCceEEEEeceE---------EEEE------CCCCCcEEEEEcCCCCEEEEECCC
Confidence 469999999999999999987766 77777777641 1211 11226889998877 999999999
Q ss_pred hhhHHHHHHHHHh
Q 001322 322 GAKVRDWVAAIND 334 (1100)
Q Consensus 322 ~~~~~~w~~~i~~ 334 (1100)
...+.+|+.+|+.
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01246 78 EEERQRWVDALEL 90 (91)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999975
No 103
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.99 E-value=5.5e-05 Score=71.15 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=55.0
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCC--CccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc-eEEEEEeCc
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDT--KPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTRT 321 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~--~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~~ 321 (1100)
..|++||||++++.|.|.++..+. .++.+|-+.. ..+. . .......|.|..+. |...|++.|
T Consensus 13 k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~---------~~i~-~-----~~~~~~~F~i~~~~~r~~~L~A~s 77 (91)
T cd01247 13 NGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKK---------AIIA-A-----HEFDENRFDISVNENVVWYLRAEN 77 (91)
T ss_pred CCCceEEEEEECCEEEEEecCccCcCCCcEEEECcc---------cEEE-c-----CCCCCCEEEEEeCCCeEEEEEeCC
Confidence 579999999999999999886553 3566665542 1111 1 11124678885555 999999999
Q ss_pred hhhHHHHHHHHHh
Q 001322 322 GAKVRDWVAAIND 334 (1100)
Q Consensus 322 ~~~~~~w~~~i~~ 334 (1100)
.....+|+++|+.
T Consensus 78 ~~e~~~Wi~al~~ 90 (91)
T cd01247 78 SQSRLLWMDSVVR 90 (91)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999975
No 104
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.99 E-value=2.9e-06 Score=62.51 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=18.1
Q ss_pred eeeeeeEEEEeCcEEEEcccccCcCc
Q 001322 899 VYVHSKVMIIDDSIALIGSANINDRS 924 (1100)
Q Consensus 899 iyvHSKlmIVDD~~~iIGSANiN~RS 924 (1100)
...|+|++||||++++|||+||++|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 37899999999999999999999875
No 105
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.98 E-value=5.2e-05 Score=70.14 Aligned_cols=91 Identities=23% Similarity=0.411 Sum_probs=63.0
Q ss_pred ceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCC--CCccEEEEEcCCCCCCCCCCCcc
Q 001322 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFD--TKPMDIIVFDVLPASDGNGEGRV 290 (1100)
Q Consensus 213 keg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~--~~~~~v~lfD~~~~~~~~~~~~~ 290 (1100)
|||||.++.... ...|.+|||+++++.|.|.+++.+ ..+...|-++. ..+
T Consensus 1 k~G~L~kk~~~~-------------------~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~---------~~v 52 (94)
T cd01250 1 KQGYLYKRSSKS-------------------NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRR---------CTV 52 (94)
T ss_pred CcceEEEECCCc-------------------CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccc---------eEE
Confidence 689998874110 146999999999999999987654 22332322221 112
Q ss_pred ccchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHh
Q 001322 291 SLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAIND 334 (1100)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~ 334 (1100)
.... +.+...+.|.|....+.+.|.+.+...+.+|+.+|..
T Consensus 53 ~~~~---~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 53 RHNG---KQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred ecCc---cccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence 1111 1112568999999999999999999999999999975
No 106
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.95 E-value=5.1e-05 Score=72.80 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=59.2
Q ss_pred CCceEEEEEcCC------eEEEeeCCC-----CCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceE
Q 001322 246 NWQKVWAVLKPG------FLALLADPF-----DTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRS 314 (1100)
Q Consensus 246 ~w~krW~vvk~s------~l~~~~~~~-----~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~ 314 (1100)
.|+|||||+|.. .|-|.++-. +..|..||-++.-+.+. + ......+|+|.|.+..|.
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~----------~--~~d~k~~~~f~i~t~dr~ 80 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNIN----------K--RADAKHRHLIALYTRDEY 80 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEe----------e--ccccccCeEEEEEeCCce
Confidence 588999999988 799997532 26789999887532221 1 001123589999999999
Q ss_pred EEEEeCchhhHHHHHHHHHh
Q 001322 315 IRLRTRTGAKVRDWVAAIND 334 (1100)
Q Consensus 315 l~l~~~~~~~~~~w~~~i~~ 334 (1100)
..|.|.|+....+|..+|.+
T Consensus 81 f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 81 FAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEeCCHHHHHHHHHHHhh
Confidence 99999999999999999875
No 107
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.90 E-value=9.4e-05 Score=73.31 Aligned_cols=91 Identities=14% Similarity=0.357 Sum_probs=64.2
Q ss_pred ceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCcccc
Q 001322 213 KEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSL 292 (1100)
Q Consensus 213 keg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~ 292 (1100)
|||||.|+.+ . ...|.+||||++++.|.|.+++.+.++..+|.++.- .+..
T Consensus 2 k~G~L~K~~~---------------~-----~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~---------~v~~ 52 (125)
T cd01252 2 REGWLLKQGG---------------R-----VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENV---------SIRE 52 (125)
T ss_pred cEEEEEEeCC---------------C-----CCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCc---------EEEE
Confidence 7999998721 0 156999999999999999998877888887776621 1111
Q ss_pred chhhcccCCcceeEEEEe---------------------CceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 293 ATEVKERNPLRHAFKVTC---------------------GVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 293 ~~~~~~~~~~~~~~~i~~---------------------~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
.. .....+.|.|.. ..+.+.|.|.+...+.+|+.+|..+.
T Consensus 53 ~~----~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~ 113 (125)
T cd01252 53 VE----DPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASI 113 (125)
T ss_pred cc----cCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 10 112234454433 33566799999999999999999875
No 108
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.87 E-value=0.0001 Score=69.71 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=59.9
Q ss_pred CCCceEEEEEcC--CeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCch
Q 001322 245 DNWQKVWAVLKP--GFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (1100)
Q Consensus 245 ~~w~krW~vvk~--s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~ 322 (1100)
..|++||||+++ ..|.|.+++.+.++..+|-++..-.+....... +.+ ......+.|.|....|...|.+.+.
T Consensus 13 k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~---~~~--~~~~~~~~f~i~t~~r~~~~~a~s~ 87 (101)
T cd01235 13 KGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGM---GAP--KHTSRKGFFDLKTSKRTYNFLAENI 87 (101)
T ss_pred CCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCC---CCC--CCCCCceEEEEEeCCceEEEECCCH
Confidence 579999999994 489999988888888887665421111000000 000 0111245688888999999999999
Q ss_pred hhHHHHHHHHHhc
Q 001322 323 AKVRDWVAAINDA 335 (1100)
Q Consensus 323 ~~~~~w~~~i~~~ 335 (1100)
..+.+|+.+|+..
T Consensus 88 ~e~~~Wi~ai~~~ 100 (101)
T cd01235 88 NEAQRWKEKIQQC 100 (101)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999763
No 109
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.84 E-value=9.6e-05 Score=71.50 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=61.3
Q ss_pred CCCceEEEEEcCCe-------EEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEE
Q 001322 245 DNWQKVWAVLKPGF-------LALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRL 317 (1100)
Q Consensus 245 ~~w~krW~vvk~s~-------l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l 317 (1100)
..|++||||+++.- |.|.+++.+.++..+|-++.-..++. .+. .. .......+.|.|....|.+.|
T Consensus 17 ~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~----~~~--~~-~~~~~~~~~f~i~t~~r~y~l 89 (108)
T cd01266 17 TKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDP----GLL--CT-AGNCIFGYGFDIETIVRDLYL 89 (108)
T ss_pred cCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcc----ccc--cc-ccCcccceEEEEEeCCccEEE
Confidence 58999999999864 69999888889999988775211100 000 00 011223578999999999999
Q ss_pred EeCchhhHHHHHHHHHh
Q 001322 318 RTRTGAKVRDWVAAIND 334 (1100)
Q Consensus 318 ~~~~~~~~~~w~~~i~~ 334 (1100)
.+.|...+.+|+.+|.+
T Consensus 90 ~A~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 90 VAKNEEEMTLWVNCICK 106 (108)
T ss_pred EECCHHHHHHHHHHHHh
Confidence 99999999999999975
No 110
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=97.80 E-value=9.2e-05 Score=72.81 Aligned_cols=89 Identities=10% Similarity=0.222 Sum_probs=63.6
Q ss_pred ceeEEEEEEEeee-----eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccc
Q 001322 62 MLLSYTIEVQYKQ-----FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (1100)
Q Consensus 62 ~~~~YtIEl~hG~-----fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~ 136 (1100)
.+++|+|+.+... -.|+|.|+|+||..||..|.. .+. ...+||
T Consensus 17 ~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~------------~~p----~~~iPp---------------- 64 (116)
T cd07283 17 TYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEE------------SQP----THLIPP---------------- 64 (116)
T ss_pred CeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHH------------hCC----CcccCC----------------
Confidence 4899999998753 389999999999999987763 111 111112
Q ss_pred ccccccccCCCCCCCCCCC---CCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 137 NHDESSKKRDVPANAALPV---IRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 137 ~~~~~~~~~~~p~~~~~~~---~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
||. ++...+ ..+.+.++||..||.||+.++.++.++++..+..||.
T Consensus 65 ----------------LP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt 114 (116)
T cd07283 65 ----------------LPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLT 114 (116)
T ss_pred ----------------CCCcccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 111 011112 1356677778899999999999999999999999985
No 111
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.69 E-value=0.00031 Score=67.10 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=55.6
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEEEEc-CCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchh
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFD-VLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGA 323 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~ 323 (1100)
..|.+|||++.+.-|.|.+++.+ .+...|-.. .. ....++.. .....+.|+|....|.+.+.|.+..
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~~-~~~g~I~L~~i~--------~ve~v~~~---~~~~~~~fqivt~~r~~yi~a~s~~ 86 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQC-KKSALIKLAAIK--------GTEPLSDK---SFVNVDIITIVCEDDTMQLQFEAPV 86 (98)
T ss_pred cCCceeEEEECCCEEEEECCCCC-ceeeeEEccceE--------EEEEcCCc---ccCCCceEEEEeCCCeEEEECCCHH
Confidence 47999999999999999998764 333333221 10 00011110 1223589999999999999999999
Q ss_pred hHHHHHHHHHh
Q 001322 324 KVRDWVAAIND 334 (1100)
Q Consensus 324 ~~~~w~~~i~~ 334 (1100)
+..+|+.+|..
T Consensus 87 E~~~Wi~al~k 97 (98)
T cd01244 87 EATDWLNALEK 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 112
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=97.53 E-value=0.00076 Score=65.88 Aligned_cols=90 Identities=23% Similarity=0.409 Sum_probs=45.6
Q ss_pred CCCceEEEEEc-CCeEEEeeCCCCCCccEEEEEcCCCCCCCCCC----Ccc-ccch---hhcccCCcceeEEEEeCceEE
Q 001322 245 DNWQKVWAVLK-PGFLALLADPFDTKPMDIIVFDVLPASDGNGE----GRV-SLAT---EVKERNPLRHAFKVTCGVRSI 315 (1100)
Q Consensus 245 ~~w~krW~vvk-~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~----~~~-~~~~---~~~~~~~~~~~~~i~~~~r~l 315 (1100)
..|++|||||+ |..|.|.+.|.+.....|+.=.+.-.+ ..+. ... .+.. ...........+.|..+++++
T Consensus 14 kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt~ 92 (112)
T PF15413_consen 14 KGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVI-RKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKTF 92 (112)
T ss_dssp S--EEEEEEEE-TTEEEEESS-------------TT-SB--SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS-EE
T ss_pred cCccccEEEEEeCCEEEEeecccccccccccccchhceE-eecccCcccccccccccccCCcccCcCCCCcEEECCCcEE
Confidence 57999999999 999999987433322222211110000 0000 000 0000 000011124667889999999
Q ss_pred EEEeCchhhHHHHHHHHHhc
Q 001322 316 RLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 316 ~l~~~~~~~~~~w~~~i~~~ 335 (1100)
.|+|.+.....+|+.+|.++
T Consensus 93 ~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 93 HLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEESSHHHHHHHHHHHHH-
T ss_pred EEEECCHHHHHHHHHHHHhC
Confidence 99999999999999999864
No 113
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=97.52 E-value=0.00029 Score=69.39 Aligned_cols=90 Identities=12% Similarity=0.274 Sum_probs=62.5
Q ss_pred CceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCccccccc
Q 001322 61 PMLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIA 135 (1100)
Q Consensus 61 ~~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~ 135 (1100)
..++.|+|..+-. .-.|+|.|+|+||..||..|.. .+. ...+||
T Consensus 16 ~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~------------~~p----~~~iPp--------------- 64 (116)
T cd07284 16 ETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEE------------AHP----TLIIPP--------------- 64 (116)
T ss_pred cCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHH------------HCC----CceeCC---------------
Confidence 3589999988753 3378999999999999987763 111 111112
Q ss_pred cccccccccCCCCCCCCCCC---CCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhh
Q 001322 136 VNHDESSKKRDVPANAALPV---IRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLE 198 (1100)
Q Consensus 136 ~~~~~~~~~~~~p~~~~~~~---~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLe 198 (1100)
||. ++...+ ..+.+.++||+.||.||+.++..+.++.+..+..||.
T Consensus 65 -----------------lP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~ 114 (116)
T cd07284 65 -----------------LPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 114 (116)
T ss_pred -----------------CCCcchhhhccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhc
Confidence 111 011111 1345667778899999999999999999999999985
No 114
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.45 E-value=0.0013 Score=59.43 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=60.4
Q ss_pred CCCceEEEEEcCCeEEEeeCCCC---CCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCce-EEEEEeC
Q 001322 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVR-SIRLRTR 320 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~---~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r-~l~l~~~ 320 (1100)
..|+++|+++.+..|.|.++... ..+..++.++.. .+...... ...+..++|.|.+..+ .+.+.|.
T Consensus 16 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~---------~v~~~~~~-~~~~~~~~f~l~~~~~~~~~f~~~ 85 (102)
T smart00233 16 KSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI---------TVREAPDP-DSAKKPHCFEIKTADRRSYLLQAE 85 (102)
T ss_pred CCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC---------EEEeCCCC-ccCCCceEEEEEecCCceEEEEcC
Confidence 57999999999999999987654 355666666532 22211110 0024578999999998 9999999
Q ss_pred chhhHHHHHHHHHhc
Q 001322 321 TGAKVRDWVAAINDA 335 (1100)
Q Consensus 321 ~~~~~~~w~~~i~~~ 335 (1100)
|......|..+|..+
T Consensus 86 s~~~~~~W~~~i~~~ 100 (102)
T smart00233 86 SEEEREEWVDALRKA 100 (102)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
No 115
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.44 E-value=0.0099 Score=68.37 Aligned_cols=123 Identities=21% Similarity=0.226 Sum_probs=77.6
Q ss_pred CCCeEEEEecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhC--CcEEEEEEechh-h
Q 001322 361 DGSQAQWFVDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQ--GVQIYILLYKEV-A 437 (1100)
Q Consensus 361 ~gn~v~~lvdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~r--GVkVrILl~d~~-~ 437 (1100)
.|..+.+.....++|+.+...|.+||++|+|++ +||= .....|.+.|..+.+. ..+|.||+ |.. +
T Consensus 27 ~~d~idiihep~~fy~~lk~~I~~aq~Ri~las------LYlG-----~~E~elv~cl~~aL~~~~~L~v~iLl-D~~rg 94 (469)
T KOG3964|consen 27 NGDDIDIIHEPPEFYQRLKKLIKKAQRRIFLAS------LYLG-----KLERELVDCLSNALEKNPSLKVSILL-DFLRG 94 (469)
T ss_pred ccccceeecCCHHHHHHHHHHHHHhhheeeeee------eccc-----hhHHHHHHHHHHHhccCCCcEEEeeh-hhhhh
Confidence 367899999999999999999999999999984 7883 3567888888887754 68999987 432 2
Q ss_pred hHhhcchh--hhHHHhhcc-CCCeEE--EEcCCC--c-----c--cCcccccCcceEEEEeCcEEEEccccCC
Q 001322 438 LALKINSV--YSKRKLLSI-HENVRV--LRYPDH--F-----A--SGVYLWSHHEKLVIVDYQICFIGGLDLC 496 (1100)
Q Consensus 438 ~~l~~~s~--~~k~~L~~l-~~nI~V--~r~p~~--~-----~--~~~~~~~hHqKivVID~~vAfvGGiNL~ 496 (1100)
..-..++. ...-++... ...+.+ ++-|.. + + ..-...-.|-|+.-+|+.+ .+-|.|++
T Consensus 95 tr~~~~~~s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fddev-iiSGanls 166 (469)
T KOG3964|consen 95 TRELPNSCSALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDEV-IISGANLS 166 (469)
T ss_pred cccCcccchhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHhh-hcccccch
Confidence 11001110 000001100 112332 221321 0 0 0112346899999999998 56788995
No 116
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.37 E-value=0.00015 Score=53.35 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=21.7
Q ss_pred ccCcceEEEEeCcEEEEccccCC
Q 001322 474 WSHHEKLVIVDYQICFIGGLDLC 496 (1100)
Q Consensus 474 ~~hHqKivVID~~vAfvGGiNL~ 496 (1100)
.++|+|++|||++.+++||.|++
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~ 25 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLD 25 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCC
Confidence 57899999999999999999996
No 117
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.32 E-value=0.0014 Score=61.46 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCCceEEEEE--cCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCch
Q 001322 245 DNWQKVWAVL--KPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTG 322 (1100)
Q Consensus 245 ~~w~krW~vv--k~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~ 322 (1100)
..|.||||++ +++.|.|..++.+++++.-+-+-. ..++ .+.....|.|++|.....|++.|.
T Consensus 12 qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~---------a~is-------~~~~~~~I~idsg~~i~hLKa~s~ 75 (89)
T PF15409_consen 12 QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSL---------AVIS-------ANKKSRRIDIDSGDEIWHLKAKSQ 75 (89)
T ss_pred CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccc---------eEEE-------ecCCCCEEEEEcCCeEEEEEcCCH
Confidence 4699999999 999999999888877766663321 1122 223345799999999999999999
Q ss_pred hhHHHHHHHHHhc
Q 001322 323 AKVRDWVAAINDA 335 (1100)
Q Consensus 323 ~~~~~w~~~i~~~ 335 (1100)
.....|+.+|+.+
T Consensus 76 ~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 76 EDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
No 118
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.29 E-value=0.0015 Score=62.64 Aligned_cols=94 Identities=18% Similarity=0.303 Sum_probs=52.8
Q ss_pred cceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEc-CCeEE-EeeCCCCCCccEEEEEcCCCCCCCCCCCc
Q 001322 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLK-PGFLA-LLADPFDTKPMDIIVFDVLPASDGNGEGR 289 (1100)
Q Consensus 212 gkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk-~s~l~-~~~~~~~~~~~~v~lfD~~~~~~~~~~~~ 289 (1100)
.|||+|.|+.. -...|++|||+++ ++-|+ |-++|.+.. .+++..+. ..
T Consensus 2 ~k~G~L~K~g~--------------------~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~-~~~i~l~~---------~~ 51 (102)
T cd01241 2 VKEGWLHKRGE--------------------YIKTWRPRYFLLKSDGSFIGYKEKPEDGD-PFLPPLNN---------FS 51 (102)
T ss_pred cEEEEEEeecC--------------------CCCCCeeEEEEEeCCCeEEEEecCCCccC-ccccccCC---------eE
Confidence 48999998721 1157999999999 77666 544453332 22222221 01
Q ss_pred cccchhhcccCCcceeEEEEeC----ceEEEEEeCchhhHHHHHHHHHhc
Q 001322 290 VSLATEVKERNPLRHAFKVTCG----VRSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~----~r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
+.-+.......+..+.|.|... .-...+.|.|.....+|+.+|+..
T Consensus 52 v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 52 VAECQLMKTERPRPNTFIIRCLQWTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EeeeeeeeccCCCcceEEEEeccCCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 1000000001233467888621 112256789999999999999764
No 119
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.26 E-value=0.0014 Score=81.69 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=80.7
Q ss_pred HHHHHHHHhccc-----EEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCch
Q 001322 767 CAYCSLIEKAEH-----FIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAA 841 (1100)
Q Consensus 767 ~ayl~aI~~A~h-----fIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~ 841 (1100)
...++.|+.|.+ .|.|+- |-++.. + +|.+||.+ |+++ |++|.|++-+...|..+
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~---s----~ii~aL~~----Aa~~--Gk~V~v~veLkArfde~------- 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD---S----PIIDALIE----AAEN--GKEVTVVVELKARFDEE------- 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC---c----HHHHHHHH----HHHc--CCEEEEEEEehhhccch-------
Confidence 567789999998 899974 444432 1 67777775 4444 78999999877665321
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeC-------cEEE
Q 001322 842 SVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDD-------SIAL 914 (1100)
Q Consensus 842 s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD-------~~~i 914 (1100)
+-.+| .++|.+ .|+.+- |++ . .+.+|||+|+||. +++.
T Consensus 401 ---~ni~w------------a~~le~-aG~~vi-----yg~--------~------~~k~H~K~~li~r~~~~~~~~y~~ 445 (672)
T TIGR03705 401 ---ANIRW------------ARRLEE-AGVHVV-----YGV--------V------GLKTHAKLALVVRREGGELRRYVH 445 (672)
T ss_pred ---hhHHH------------HHHHHH-cCCEEE-----EcC--------C------CeeeeeEEEEEEEeeCCceEEEEE
Confidence 11233 345666 487642 232 1 2589999999997 4799
Q ss_pred EcccccCcCccCCCCCcceeEEEEcCccc
Q 001322 915 IGSANINDRSLLGSRDSEIGVLIEDKESV 943 (1100)
Q Consensus 915 IGSANiN~RSm~G~~DsEi~v~I~d~~~~ 943 (1100)
||+.|+|...-. .-+++++...+++.+
T Consensus 446 igTgN~n~~ta~--~y~D~~l~t~~~~i~ 472 (672)
T TIGR03705 446 LGTGNYHPKTAR--LYTDLSLFTADPEIG 472 (672)
T ss_pred ecCCCCCCcccc--cccceeEEEeChHHH
Confidence 999999999763 456677776776643
No 120
>PLN02866 phospholipase D
Probab=97.19 E-value=0.0017 Score=82.79 Aligned_cols=118 Identities=20% Similarity=0.235 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcccEEEEEeeecccCC----CCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCC
Q 001322 764 SIHCAYCSLIEKAEHFIYIENQFFISGL----SGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGG 839 (1100)
Q Consensus 764 sI~~ayl~aI~~A~hfIYIEnQyFis~~----~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~ 839 (1100)
....|++++|++||++|||+.-.|-|.. ..++....+|.++|.+ |++ +||+|+|++=...++...++
T Consensus 344 dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~~g~RL~~lL~r----KAk--rGVkVrVLLyD~vg~al~~~--- 414 (1068)
T PLN02866 344 AAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDHESSRLDSLLEA----KAK--QGVQIYILLYKEVALALKIN--- 414 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCchHHHHHHHHHH----HHH--CCCEEEEEEECccccccccC---
Confidence 7999999999999999999432222111 0112244556666654 333 49999997532212111111
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHH-hcCCCcccccccccccccccccCCCCccccceeeeeeEEEEeCcEEEEccc
Q 001322 840 AASVRAIMHWQYRTICRGQNSILHNLYA-LLGPKTHDYISFYGLRAYGRLFEDGPVATSQVYVHSKVMIIDDSIALIGSA 918 (1100)
Q Consensus 840 ~~s~r~im~~qyrtI~rG~~si~~~L~~-~~G~~~~~Yi~f~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSA 918 (1100)
+. + ....|.+ ..|+.+..+-.. + ..+ +-...-|-|++|||++++++|+.
T Consensus 415 --S~-----~-----------~k~~L~~lh~gI~V~r~P~~-----~----~~~---~ln~RhHRKIVVIDg~IAFvGGi 464 (1068)
T PLN02866 415 --SV-----Y-----------SKRRLLGIHENVKVLRYPDH-----F----SSG---VYLWSHHEKLVIVDYQICFIGGL 464 (1068)
T ss_pred --ch-----h-----------hHHHHHHhCCCeEEEecCcc-----c----ccC---cccccCCCCeEEECCCEEEecCc
Confidence 00 0 0112322 124433221100 0 000 01236799999999999999999
Q ss_pred cc
Q 001322 919 NI 920 (1100)
Q Consensus 919 Ni 920 (1100)
||
T Consensus 465 NL 466 (1068)
T PLN02866 465 DL 466 (1068)
T ss_pred cc
Confidence 99
No 121
>PF13918 PLDc_3: PLD-like domain
Probab=97.13 E-value=0.0027 Score=66.67 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcccEEEEEeeecccCCCCCh--HHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCC
Q 001322 762 EESIHCAYCSLIEKAEHFIYIENQFFISGLSGDE--IIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLP 829 (1100)
Q Consensus 762 E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~--~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P 829 (1100)
...-.+|.++.|..|++||||+-.-|+|...-.. .-...|-+||.+++. .+||+|++++..+.
T Consensus 80 RT~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA~-----~R~V~VRlLIS~W~ 144 (177)
T PF13918_consen 80 RTLDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAAI-----ERGVKVRLLISCWK 144 (177)
T ss_pred CCcHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHHH-----HcCCeEEEEEeecC
Confidence 3356789999999999999999999988642111 122334444443322 24999999999774
No 122
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.99 E-value=0.0045 Score=69.32 Aligned_cols=138 Identities=24% Similarity=0.293 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhh--HhhcchhhhHHH
Q 001322 373 AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVAL--ALKINSVYSKRK 450 (1100)
Q Consensus 373 ~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~--~l~~~s~~~k~~ 450 (1100)
..-+.+.+.|.+|++-|-| -+-++.+ ..-|.++|.++-+|||-||||+ |.... .+.+-.. -.
T Consensus 134 ~IKE~vR~~I~~A~kVIAI-------VMD~FTD-----~dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~---~~ 197 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAI-------VMDVFTD-----VDIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEK---LG 197 (284)
T ss_pred CHHHHHHHHHHHhcceeEE-------Eeecccc-----HHHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHH---CC
Confidence 4567788999999999999 3556653 3455565555559999999998 44322 1111110 01
Q ss_pred hhc-cCCCeEEEEcCCC---cccC-cccccCcceEEEEeCcEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 451 LLS-IHENVRVLRYPDH---FASG-VYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNPRE 525 (1100)
Q Consensus 451 L~~-l~~nI~V~r~p~~---~~~~-~~~~~hHqKivVID~~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~r~ 525 (1100)
+.. ..+|++|.--... ..+| .+-...++|+++||+..+..|+--.+ |-.
T Consensus 198 v~~~~~~nmrVRsv~G~~y~~rsg~k~~G~~~eKF~lvD~~~V~~GSYSFt---Ws~----------------------- 251 (284)
T PF07894_consen 198 VNLQHLKNMRVRSVTGCTYYSRSGKKFKGQLKEKFMLVDGDKVISGSYSFT---WSS----------------------- 251 (284)
T ss_pred CChhhcCCeEEEEecCCeeecCCCCeeeCcccceeEEEeccccccccccee---ecc-----------------------
Confidence 100 1257776543211 1222 45678899999999999999997765 200
Q ss_pred CCCCCccccccccccCCCCCCCCeEEEEEEEEChHHHHHHHHHHHHH
Q 001322 526 SEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGPPCRDVARHFVQRW 572 (1100)
Q Consensus 526 ~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gpaa~dl~~~F~qrW 572 (1100)
..++| -+...+.|.+|....+.|..-.
T Consensus 252 -----------~~~~r---------~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 252 -----------SRVHR---------NLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred -----------ccccc---------ceeEEEeccccchHhHHHHHHH
Confidence 11222 2678899999999999997654
No 123
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.92 E-value=0.0043 Score=59.91 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=57.2
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc----eEEEEEeC
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV----RSIRLRTR 320 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----r~l~l~~~ 320 (1100)
..|.+|||++|+.+|.|.++.++....-++-+... +..+.-... -....++|++...+ |...|+|.
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~-------gcev~~dv~---~~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLK-------GCEVTPDVN---VAQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecC-------ceEEccccc---ccccceEEEEecCCccCCeEEEEECC
Confidence 46999999999999999987765544444443321 011110000 01235888888776 99999999
Q ss_pred chhhHHHHHHHHHhcc
Q 001322 321 TGAKVRDWVAAINDAG 336 (1100)
Q Consensus 321 ~~~~~~~w~~~i~~~~ 336 (1100)
|+.+..+|+++..-++
T Consensus 88 sEeqya~Wmaa~rlas 103 (106)
T cd01237 88 NEKQYAKWMAACRLAS 103 (106)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998765
No 124
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=96.89 E-value=0.0064 Score=57.69 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=61.9
Q ss_pred EEEeeeeecCCCCCCCceeEEEEEEEee-eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc
Q 001322 46 ASIVSVSRPDAGDISPMLLSYTIEVQYK-QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAV 124 (1100)
Q Consensus 46 v~I~~ver~~s~~~~~~~~~YtIEl~hG-~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~ 124 (1100)
|+|++.....+ ++|-|++... +=.=.|+|+|.+|..||.+||+ + +| .
T Consensus 2 ~~i~~f~k~~s-------~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~------------~-------FP--~---- 49 (101)
T cd06896 2 ATILGFSKKSS-------NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQK------------Q-------FP--S---- 49 (101)
T ss_pred ceEEEeecccc-------eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHH------------H-------Cc--c----
Confidence 45666544332 5799988764 4445699999999999999985 1 22 0
Q ss_pred cccCccccccccccccccccCCCCCCCCCCCCCCcccCCCCccHHHHHHHHHHHHHHHhhc-cccChhhhhhhhh
Q 001322 125 VQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPALGRQHSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFLE 198 (1100)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~l~~~~~~~~r~r~~LE~YL~~lL~~~-~~~~~~~l~~FLe 198 (1100)
+.+|+ +|. +=.++.. ....+|.+.|+.||+.||... .++++..+..||+
T Consensus 50 --------------------~~LP~---fP~-~~~~~~~-~~~~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 50 --------------------LALPE---FPH-WWHLPFT-DSDHKRVRDLNHYLEQLLSGSREVANSDCVLSFFL 99 (101)
T ss_pred --------------------ccccC---CCC-ccccCcc-cHHHHHHHHHHHHHHHHHccCHHHhcchHHHHHhh
Confidence 11122 111 0001111 224567789999999999855 4689999999985
No 125
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.76 E-value=0.0094 Score=53.29 Aligned_cols=78 Identities=19% Similarity=0.394 Sum_probs=58.3
Q ss_pred CCCceEEEEEcCCeEEEeeCCCC---CCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc-eEEEEEeC
Q 001322 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTR 320 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~---~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~ 320 (1100)
..|+++|++|.++.|.+++.... ..+..++.++. ..+.... ......+.|.|.+.. +.+.+.|.
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~---------~~v~~~~---~~~~~~~~f~i~~~~~~~~~~~~~ 81 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG---------AEVEESP---DDSGRKNCFEIRTPDGRSYLLQAE 81 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC---------CEEEECC---CcCCCCcEEEEecCCCcEEEEEeC
Confidence 57999999999999999986655 45666666653 1222111 011246899999888 99999999
Q ss_pred chhhHHHHHHHHHh
Q 001322 321 TGAKVRDWVAAIND 334 (1100)
Q Consensus 321 ~~~~~~~w~~~i~~ 334 (1100)
|...+..|..+|+.
T Consensus 82 s~~~~~~W~~~l~~ 95 (96)
T cd00821 82 SEEEREEWIEALQS 95 (96)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999975
No 126
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.72 E-value=0.01 Score=59.04 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=52.3
Q ss_pred CCCceEEEEEcCCeEEEeeCCCC---CCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc---------
Q 001322 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV--------- 312 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~---~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------- 312 (1100)
..|++||||+++++|.|.++|.+ ..|+.+|-+..-..+. +..+. .+.-+..+.|.|....
T Consensus 17 k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~------v~~~~--r~~c~Rp~tF~i~~~~~~~~~~~~~ 88 (122)
T cd01263 17 GAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSE------GASAV--RDICARPNTFHLDVWRPKMETDDET 88 (122)
T ss_pred CCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccc------cccCC--hhhcCCCCeEEEEEecccccccccc
Confidence 57999999999999999998877 4577776665421111 10000 1122345667664321
Q ss_pred ----------e-EEEEEeCchhhHHHHHHHHHh
Q 001322 313 ----------R-SIRLRTRTGAKVRDWVAAIND 334 (1100)
Q Consensus 313 ----------r-~l~l~~~~~~~~~~w~~~i~~ 334 (1100)
| ..-|.+.|..+..+|..+|++
T Consensus 89 ~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 89 LVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred eeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 2 134557889999999999986
No 127
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.68 E-value=0.0084 Score=57.42 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=54.2
Q ss_pred CCCceEEEEEcC----CeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhccc-CCcceeEEEEeCce-EEEEE
Q 001322 245 DNWQKVWAVLKP----GFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKER-NPLRHAFKVTCGVR-SIRLR 318 (1100)
Q Consensus 245 ~~w~krW~vvk~----s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~r-~l~l~ 318 (1100)
..|++|||++.. +.|.|++++-+.++.+++.... +.+. .+.++ -+..+-|.|.+.++ +.-..
T Consensus 14 K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~-----------~~V~-~v~ds~~~r~~cFel~~~~~~~~y~~ 81 (98)
T cd01245 14 KLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSD-----------AYLY-PVHDSLFGRPNCFQIVERALPTVYYS 81 (98)
T ss_pred cccceeEEEEecCCCCceEEEEcCCCCCCccceeeccc-----------cEEE-EccccccCCCeEEEEecCCCCeEEEE
Confidence 579999999985 9999999888888888554331 1111 11111 12348899998887 44455
Q ss_pred eCchhhHHHHHHHHHh
Q 001322 319 TRTGAKVRDWVAAIND 334 (1100)
Q Consensus 319 ~~~~~~~~~w~~~i~~ 334 (1100)
|.+..+..+|+.+|..
T Consensus 82 ~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 82 CRSSEERDKWIESLQA 97 (98)
T ss_pred eCCHHHHHHHHHHHhc
Confidence 5555999999999875
No 128
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=96.61 E-value=0.02 Score=62.86 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=62.9
Q ss_pred ecHHHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhcchhhhH
Q 001322 369 VDGKAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSK 448 (1100)
Q Consensus 369 vdG~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~~s~~~k 448 (1100)
.+-+.....+.++|++|+++|+|..| ...-.+|.+.|++|++|||+|.++++.... +.
T Consensus 6 kg~~~I~~~i~elI~~Ae~eI~is~~-------------~~~l~~l~~~L~~a~~rGV~V~li~~~~~~-----~~---- 63 (233)
T PF11495_consen 6 KGRETILERIRELIENAESEIYISIP-------------PEFLEELRDELEEAVDRGVKVKLIVFGEDP-----DP---- 63 (233)
T ss_dssp SSHHHHHHHHHHHHHC-SSEEEEEE--------------GGGHHHHHHHHHHHHHTT-EEEEEESS--------------
T ss_pred eCHHHHHHHHHHHHHHhheEEEEEcC-------------HHHHHHHHHHHHHHHHCCCEEEEEEeCCCC-----Cc----
Confidence 34456889999999999999999776 234568999999999999999999977110 00
Q ss_pred HHhhccCCCeEEEEcCCCcccCcccccCcceEEEEeCcEEEEccccCC
Q 001322 449 RKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDYQICFIGGLDLC 496 (1100)
Q Consensus 449 ~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~~vAfvGGiNL~ 496 (1100)
.....+.+....+.-. ..|--++|+|++.+++++....
T Consensus 64 -~~~~~~~~~~~vr~~~---------~~~~~~~ivD~~~~l~~~~~~~ 101 (233)
T PF11495_consen 64 -EEFEYHGNATEVRVRR---------GGRPFMVIVDRKEALFAPSDML 101 (233)
T ss_dssp -GGGTTSSEEEEEE-S------------S-EEEEETTTEEEEETTTTT
T ss_pred -hhhhhcccccEEEEec---------CCCcEEEEEECCEEEEEecccc
Confidence 1111233444444321 1245679999999999997753
No 129
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.56 E-value=0.015 Score=55.59 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=51.4
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCC--CccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEE-eCceEEEEEeCc
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDT--KPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVT-CGVRSIRLRTRT 321 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~--~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~r~l~l~~~~ 321 (1100)
..|.+||++++++-|.|.++.... ....++.+|. . ...+.+.. +....++-|.|. .+++.+.|.+.+
T Consensus 21 ~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l------~-~~~i~~~~---~~~k~~~~F~l~~~~~~~~~f~a~s 90 (104)
T cd01253 21 RSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDL------T-GAQCEVAS---DYTKKKHVFRLRLPDGAEFLFQAPD 90 (104)
T ss_pred CCcceEEEEEeCCEEEEEecCcccccCCCCCCcEec------c-CCEEEecC---CcccCceEEEEEecCCCEEEEECCC
Confidence 579999999999999999865432 2211111221 0 11222211 112234778875 445899999999
Q ss_pred hhhHHHHHHHHHh
Q 001322 322 GAKVRDWVAAIND 334 (1100)
Q Consensus 322 ~~~~~~w~~~i~~ 334 (1100)
...+..|+.+|+.
T Consensus 91 ~e~~~~Wi~aL~~ 103 (104)
T cd01253 91 EEEMSSWVRALKS 103 (104)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999964
No 130
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.49 E-value=0.024 Score=56.06 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=66.6
Q ss_pred cceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCC-------CccEEEEEcCCCCCCC
Q 001322 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDT-------KPMDIIVFDVLPASDG 284 (1100)
Q Consensus 212 gkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~-------~~~~v~lfD~~~~~~~ 284 (1100)
.|||+|.-+|..-. ..++.+. -...|.++|.||+++-|.+.+|-... .+...|-++.
T Consensus 1 ~~~g~l~RK~~~~~-----~~kk~~~-----~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~------ 64 (117)
T cd01230 1 YKHGALMRKVHADP-----DCRKTPF-----GKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHH------ 64 (117)
T ss_pred CCCcEEEEEEEecC-----CCccCCC-----CCCcceEEEEEEECCEEEEEccCcccccccccccccceEEecc------
Confidence 48999987764222 1222221 12579999999999999999875321 1111121211
Q ss_pred CCCCccccchhhcccCCcceeEEEEeC-ceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 285 NGEGRVSLATEVKERNPLRHAFKVTCG-VRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
....++. +.+..++.|+|.+. ++.+.|.|.+...+..|+.+|+.+.
T Consensus 65 ---a~~~ia~---dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 65 ---ALATRAS---DYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred ---ceeEeec---cccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 0011111 23445788999986 4899999999999999999999875
No 131
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.47 E-value=0.02 Score=54.89 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=54.4
Q ss_pred CCCceEEEEEcCCeEEEeeCCC--CCCccEEE-EEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCc
Q 001322 245 DNWQKVWAVLKPGFLALLADPF--DTKPMDII-VFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRT 321 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~--~~~~~~v~-lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~ 321 (1100)
..|++|||+|-+.-|+|.+... .+.-..+. -||.. .+.+... ...+..|+|.|...+|++.+.|.|
T Consensus 16 ~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~---------~~~v~~~--~~~~~~~~F~I~~~~rsf~l~A~s 84 (101)
T cd01219 16 EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVS---------GMQVCEG--DNLERPHSFLVSGKQRCLELQART 84 (101)
T ss_pred CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecc---------cEEEEeC--CCCCcCceEEEecCCcEEEEEcCC
Confidence 4699999999998999987311 11111111 02210 1222111 122467999999999999999999
Q ss_pred hhhHHHHHHHHHhcc
Q 001322 322 GAKVRDWVAAINDAG 336 (1100)
Q Consensus 322 ~~~~~~w~~~i~~~~ 336 (1100)
..+-.+|+++|+.+.
T Consensus 85 ~eEk~~W~~ai~~~i 99 (101)
T cd01219 85 QKEKNDWVQAIFSII 99 (101)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
No 132
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.38 E-value=0.019 Score=51.65 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=56.4
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCcc-EEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeC---ceEEEEEeC
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPM-DIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG---VRSIRLRTR 320 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~-~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~ 320 (1100)
..|+++|++|.++.|.|+++.....+. .++.+... .+.... ...+..+.|.|.+. .+.+.|.|.
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~---------~v~~~~---~~~~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEI---------SVEEDP---DGSDDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccce---------EEEECC---CCCCCCceEEEECCCCCcEEEEEEcC
Confidence 689999999999999999865444443 24444321 121111 11135689999988 799999999
Q ss_pred chhhHHHHHHHHHh
Q 001322 321 TGAKVRDWVAAIND 334 (1100)
Q Consensus 321 ~~~~~~~w~~~i~~ 334 (1100)
+...+..|..+|..
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999875
No 133
>PF13918 PLDc_3: PLD-like domain
Probab=96.15 E-value=0.011 Score=62.12 Aligned_cols=57 Identities=30% Similarity=0.410 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHh-hCCcEEEEEE
Q 001322 374 AFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKA-KQGVQIYILL 432 (1100)
Q Consensus 374 ~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA-~rGVkVrILl 432 (1100)
=.+||+..|+.|+++|+|+-=..-|-+..-.+ ..--..|+++|.+|| +|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~--~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYSKP--NRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecCCC--CCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 36899999999999999976555664422222 233468999999987 8999999998
No 134
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.025 Score=62.26 Aligned_cols=93 Identities=18% Similarity=0.329 Sum_probs=57.5
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCC---CCCCCcc--cc----chhhcc-cCCcceeEEEEeCceE
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASD---GNGEGRV--SL----ATEVKE-RNPLRHAFKVTCGVRS 314 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~---~~~~~~~--~~----~~~~~~-~~~~~~~~~i~~~~r~ 314 (1100)
..|.+||||+.|.||.|++.-.+..|+.||-.....--+ .+..+-+ .. |..||. .|+ .-|=.|+-..-.
T Consensus 275 ktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe-~DGRvVEG~H~v 353 (395)
T KOG0930|consen 275 KTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTE-ADGRVVEGNHSV 353 (395)
T ss_pred cchhheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeeccc-CCceeEeccceE
Confidence 579999999999999999877677788888654321100 0111111 00 011111 111 234444434446
Q ss_pred EEEEeCchhhHHHHHHHHHhccCC
Q 001322 315 IRLRTRTGAKVRDWVAAINDAGLR 338 (1100)
Q Consensus 315 l~l~~~~~~~~~~w~~~i~~~~~~ 338 (1100)
.++-+.+.....+|..+|..+..+
T Consensus 354 YrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 354 YRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhcc
Confidence 678888999999999999987643
No 135
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=95.90 E-value=0.03 Score=56.93 Aligned_cols=101 Identities=15% Similarity=0.251 Sum_probs=66.4
Q ss_pred eEEEeeeeecCCCCCCCceeEEEEEEEee--eeE---E-EEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 001322 45 KASIVSVSRPDAGDISPMLLSYTIEVQYK--QFK---W-KLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGM 118 (1100)
Q Consensus 45 ~v~I~~ver~~s~~~~~~~~~YtIEl~hG--~fk---W-tIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~ 118 (1100)
.++|++-||.-+ . ...|++.++-+ .|+ - .|.|+|+||..||.+|... .+.. -+|
T Consensus 31 ~i~Vtd~ek~G~--~---~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~------------~~~~--iVP- 90 (140)
T cd06891 31 RVRVTGIERNKS--K---DPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGA------------NPET--FVP- 90 (140)
T ss_pred EEEEeCceecCC--C---CeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHH------------CCCc--EeC-
Confidence 689999998433 2 34566666433 343 4 5999999999999977640 0000 022
Q ss_pred CCCccccccCccccccccccccccccCCCCCCCCCCCCCCc-cc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhh
Q 001322 119 GDHMAVVQEDDEGDEIAVNHDESSKKRDVPANAALPVIRPA-LG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKF 196 (1100)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~-l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~F 196 (1100)
+ ||- +.. .+ .......+++..||.||+.+..++.+.....|..|
T Consensus 91 -p--------------------------------lP~-k~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~F 136 (140)
T cd06891 91 -A--------------------------------LPL-PSTSYGSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFF 136 (140)
T ss_pred -C--------------------------------CCC-ccccCCCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHH
Confidence 1 221 010 11 22344567788999999999999999999999999
Q ss_pred hhc
Q 001322 197 LEA 199 (1100)
Q Consensus 197 Lev 199 (1100)
||-
T Consensus 137 LEs 139 (140)
T cd06891 137 IES 139 (140)
T ss_pred hcc
Confidence 973
No 136
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=95.65 E-value=0.076 Score=51.50 Aligned_cols=85 Identities=24% Similarity=0.273 Sum_probs=61.3
Q ss_pred CcceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCC-eEEEeeCCCCCCccEEEEEcCCCCCCCCCCCc
Q 001322 211 KLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPG-FLALLADPFDTKPMDIIVFDVLPASDGNGEGR 289 (1100)
Q Consensus 211 kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s-~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~ 289 (1100)
=.++|+|.|+++ .+ .++|||+++|. =|.|++ |.++.+...|..+.. -.
T Consensus 13 Il~~g~v~K~kg----------------l~------~kkR~liLTd~PrL~Yvd-p~~~~~KGeI~~~~~--------l~ 61 (104)
T PF14593_consen 13 ILKQGYVKKRKG----------------LF------AKKRQLILTDGPRLFYVD-PKKMVLKGEIPWSKE--------LS 61 (104)
T ss_dssp EEEEEEEEEEET----------------TE------EEEEEEEEETTTEEEEEE-TTTTEEEEEE--STT---------E
T ss_pred EEEEEEEEEeec----------------eE------EEEEEEEEccCCEEEEEE-CCCCeECcEEecCCc--------eE
Confidence 469999999852 22 56899999999 999995 888888888877641 11
Q ss_pred cccchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHhc
Q 001322 290 VSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
+.+ ....+|.|....|+..|... ...+.+|.++|++.
T Consensus 62 v~~--------k~~~~F~I~tp~RtY~l~d~-~~~A~~W~~~I~~~ 98 (104)
T PF14593_consen 62 VEV--------KSFKTFFIHTPKRTYYLEDP-EGNAQQWVEAIEEV 98 (104)
T ss_dssp EEE--------CSSSEEEEEETTEEEEEE-T-TS-HHHHHHHHHHH
T ss_pred EEE--------ccCCEEEEECCCcEEEEECC-CCCHHHHHHHHHHH
Confidence 111 12347999999999999984 55688999999885
No 137
>PLN02352 phospholipase D epsilon
Probab=95.29 E-value=0.043 Score=68.92 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcC-----------CCCchhHHHHHHHHHHhh--CCcEEEEEEech
Q 001322 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRP-----------FHNHASSRLDALLEAKAK--QGVQIYILLYKE 435 (1100)
Q Consensus 372 ~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp-----------~~~~~~~rL~~lL~~aA~--rGVkVrILl~d~ 435 (1100)
.+...+.++||++||+.|||.. .|+... .....+..|...|.+|.+ ++-+|+|++.-.
T Consensus 452 rSIq~AYi~AIr~AqhfIYIEN------QYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~ 522 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIEN------QYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMW 522 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEeh------hhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 3688999999999999999975 333321 011234466666666554 578999988643
No 138
>PLN03008 Phospholipase D delta
Probab=94.87 E-value=0.11 Score=65.85 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcccEEEEeeecCCceeEEEcCC-----------CCchhHHHHHHHHHH--hhCCcEEEEEEechh
Q 001322 373 AAFEAIASSIEDAKSEIFICGWWLCPELYLRRPF-----------HNHASSRLDALLEAK--AKQGVQIYILLYKEV 436 (1100)
Q Consensus 373 ~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~-----------~~~~~~rL~~lL~~a--A~rGVkVrILl~d~~ 436 (1100)
....+.+++|++||+.|||.. .|+.... ....+..|...|.+| +.++-+|+|++.-..
T Consensus 567 SIq~aYi~aIr~A~hFIYIEN------QYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~p 637 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIEN------QYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWP 637 (868)
T ss_pred hHHHHHHHHHHhhccEEEEeh------hhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 457999999999999999964 3333210 012344555566554 456899999886543
No 139
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.063 Score=53.47 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=63.4
Q ss_pred CCceeEEEEEEEeee--e---EEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccc
Q 001322 60 SPMLLSYTIEVQYKQ--F---KWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEI 134 (1100)
Q Consensus 60 ~~~~~~YtIEl~hG~--f---kWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~ 134 (1100)
..+++-|.|-+.-+- | .=+|.|+|+||.-||..|+..+ ..+.+|+
T Consensus 32 ~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s----------------~kvvvP~-------------- 81 (144)
T KOG2527|consen 32 KNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERES----------------GKVVVPE-------------- 81 (144)
T ss_pred cccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhc----------------ccccCCC--------------
Confidence 346889999998773 2 2357899999999999887511 0122222
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCC---CCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcccc
Q 001322 135 AVNHDESSKKRDVPANAALPVIRPALGRQ---HSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKL 202 (1100)
Q Consensus 135 ~~~~~~~~~~~~~p~~~~~~~~r~~l~~~---~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~ 202 (1100)
|| ++++.++ .++.+.||.-||.||++++..+-+-+...|-.||+-..+
T Consensus 82 ------------------LP--gK~~~~~~~fre~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~~ 132 (144)
T KOG2527|consen 82 ------------------LP--GKALFRQLPFREFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSELI 132 (144)
T ss_pred ------------------CC--cHHHHhcCchHHHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhhh
Confidence 33 2233322 156667778999999999988877788888888875443
No 140
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=94.23 E-value=0.25 Score=47.70 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=27.8
Q ss_pred eeEEEEEEEe-eeeEEEEEEehhhHHHHHHHHHH
Q 001322 63 LLSYTIEVQY-KQFKWKLVKKASQVFYLHFALKR 95 (1100)
Q Consensus 63 ~~~YtIEl~h-G~fkWtIkRkykdf~~LH~~LK~ 95 (1100)
.++|.|.++- |+ .|.|+|+|-||..|...|-+
T Consensus 25 ~~~flv~V~cqgr-sW~v~RSyEdfr~LD~~LHr 57 (113)
T cd07299 25 DLVFLVQVTCQGR-SWMVLRSYEDFRTLDAHLHR 57 (113)
T ss_pred ceEEEEEEEecCc-ceEEeeeHHHHHHHHHHHHH
Confidence 5799999995 78 99999999999999876653
No 141
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.21 E-value=0.45 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=32.4
Q ss_pred cceeEEEEeCceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
..|+|.|...++++.+.+.|..+..+|+.+|.++.
T Consensus 63 ~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 63 VPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred CceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999864
No 142
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.13 E-value=0.22 Score=47.59 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=58.1
Q ss_pred CceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc--------eEEEEE
Q 001322 247 WQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV--------RSIRLR 318 (1100)
Q Consensus 247 w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------r~l~l~ 318 (1100)
-+.+|||+++++|.|.++-++..++.+|-.|..---+ + .+.. -..+|-|.+.|.. ++|.|.
T Consensus 19 sK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rd------v--e~gf---~sk~~~FeLfnpd~rnvykd~k~lel~ 87 (110)
T cd01256 19 SKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRD------I--EGGF---MSRNHKFALFYPDGRNVYKDYKQLELG 87 (110)
T ss_pred CcceEEEEecceeeeecccccccccceeeccccEEEe------e--cccc---cCCCcEEEEEcCcccccccchheeeec
Confidence 4468999999999999998888899999888531100 0 0000 1124667776653 578999
Q ss_pred eCchhhHHHHHHHHHhcc
Q 001322 319 TRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 319 ~~~~~~~~~w~~~i~~~~ 336 (1100)
|.+...+..|.++...++
T Consensus 88 ~~~~e~vdswkasflrag 105 (110)
T cd01256 88 CETLEEVDSWKASFLRAG 105 (110)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999998876
No 143
>PLN02270 phospholipase D alpha
Probab=94.11 E-value=0.18 Score=63.84 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCC-C--------------CchhHHHHHHHHHH--hhCCcEEEEEEec
Q 001322 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPF-H--------------NHASSRLDALLEAK--AKQGVQIYILLYK 434 (1100)
Q Consensus 372 ~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~-~--------------~~~~~rL~~lL~~a--A~rGVkVrILl~d 434 (1100)
.+...++++||++||++|||.. .|+.... . .-.+..|...|.+| +.++-+|+|++.-
T Consensus 498 rsI~~aYi~AI~~A~~~IYIEN------QYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~ 571 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIEN------QYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPM 571 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeeh------hhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 5789999999999999999975 3333210 0 01233455555554 4568999998865
Q ss_pred hh
Q 001322 435 EV 436 (1100)
Q Consensus 435 ~~ 436 (1100)
..
T Consensus 572 ~p 573 (808)
T PLN02270 572 WP 573 (808)
T ss_pred CC
Confidence 43
No 144
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.92 E-value=0.57 Score=45.78 Aligned_cols=87 Identities=20% Similarity=0.328 Sum_probs=57.9
Q ss_pred CCCceEEEEEcCCeEEEeeCCCC---CCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc--eEEEEEe
Q 001322 245 DNWQKVWAVLKPGFLALLADPFD---TKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV--RSIRLRT 319 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~---~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--r~l~l~~ 319 (1100)
..|+++|+||.+.=|++++...+ ..+..||-+|..|+...-...++.-+ ..+...+=|+|.... +.+.|-+
T Consensus 18 ~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a----~~kDiP~IF~I~~~~~~~~lllLA 93 (112)
T cd01242 18 PGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRA----DAKEIPKIFQILYANEARDLLLLA 93 (112)
T ss_pred CCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeec----CcccCCeEEEEEeCCccceEEEEe
Confidence 46999999999999888875432 34666665665443211111122111 134455667776654 8999999
Q ss_pred CchhhHHHHHHHHHhc
Q 001322 320 RTGAKVRDWVAAINDA 335 (1100)
Q Consensus 320 ~~~~~~~~w~~~i~~~ 335 (1100)
.+...-..|+.++...
T Consensus 94 ~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 94 PQTDEQNKWVSRLVKK 109 (112)
T ss_pred CCchHHHHHHHHHHHh
Confidence 9999999999998764
No 145
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=93.88 E-value=0.34 Score=47.86 Aligned_cols=103 Identities=22% Similarity=0.398 Sum_probs=58.4
Q ss_pred cceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCC---CCCCcc-----------EEEEEc
Q 001322 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADP---FDTKPM-----------DIIVFD 277 (1100)
Q Consensus 212 gkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~---~~~~~~-----------~v~lfD 277 (1100)
.|||+|+.++..-..| .+ .+ .-...|+..|+||+.+.|.+.++. ..+... .+|-+.
T Consensus 1 ~keG~l~RK~~~~~~g----kk-~~-----~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~ 70 (119)
T PF15410_consen 1 YKEGILMRKHELESGG----KK-AS-----RSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLH 70 (119)
T ss_dssp --EEEEEEEEEEECTT----CC---------S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-T
T ss_pred CceEEEEEEEEEcCCC----CC-cC-----CCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEec
Confidence 3899998876422111 00 00 123579999999999999999872 112111 122221
Q ss_pred CCCCCCCCCCCccccchhhcccCCcceeEEEEeC-ceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 278 VLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG-VRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
. .....+. +.+..+|-|++... +....+.+.+...+.+|+..|+..+
T Consensus 71 ~---------a~a~~a~---dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 71 H---------ALAEIAS---DYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp T----------EEEEET---TBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred c---------eEEEeCc---ccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 1 1111222 23445788999876 5799999999999999999998753
No 146
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=93.61 E-value=0.33 Score=61.49 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCC-----CCchhHHHHHHHHHHhhC--CcEEEEEEe
Q 001322 372 KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPF-----HNHASSRLDALLEAKAKQ--GVQIYILLY 433 (1100)
Q Consensus 372 ~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~-----~~~~~~rL~~lL~~aA~r--GVkVrILl~ 433 (1100)
...-.|.+++|++|||.|||.. ++||-.-. ....+..|..-+.+|-++ --+|+|++.
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN-----QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIP 628 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN-----QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIP 628 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee-----eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEe
Confidence 4577899999999999999975 45443321 122344555555555444 578888874
No 147
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.57 E-value=1.1 Score=43.62 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=55.2
Q ss_pred ccCCCceEEEEEcCCeEEEeeCCCCCCc-cEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCc
Q 001322 243 CNDNWQKVWAVLKPGFLALLADPFDTKP-MDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRT 321 (1100)
Q Consensus 243 ~~~~w~krW~vvk~s~l~~~~~~~~~~~-~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~ 321 (1100)
|..+-++|+|.+=+..|+|-+-.-.++- ..=-+++.. .+.+. .+++....+++|.|.+..++..+.|.|
T Consensus 14 ~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~---------~~~v~-~~~d~~~~~n~f~I~~~~kSf~v~A~s 83 (104)
T cd01218 14 CRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLE---------GVQVE-SIEDDGIERNGWIIKTPTKSFAVYAAT 83 (104)
T ss_pred ecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEcc---------ceEEE-ecCCcccccceEEEecCCeEEEEEcCC
Confidence 4456677999999999999753112211 110122210 11111 112223467999999999999999999
Q ss_pred hhhHHHHHHHHHhcc
Q 001322 322 GAKVRDWVAAINDAG 336 (1100)
Q Consensus 322 ~~~~~~w~~~i~~~~ 336 (1100)
..+-.+|+.+|+++.
T Consensus 84 ~~eK~eWl~~i~~ai 98 (104)
T cd01218 84 ETEKREWMLHINKCV 98 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 148
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=91.98 E-value=0.72 Score=56.99 Aligned_cols=150 Identities=17% Similarity=0.287 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhcc-ccChhhhhhhhh-ccccCCCCCCCC----CcceeeEEeeeCCCccCCCCCCCccccCCCccccC
Q 001322 172 VAMQQYLNHFLGNMD-IVNSREVCKFLE-ASKLSFSPEYGP----KLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCND 245 (1100)
Q Consensus 172 ~~LE~YL~~lL~~~~-~~~~~~l~~FLe-vS~~sf~~~~g~----kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 245 (1100)
..+|.|+..+++... ...--.+..||| +|..+-...+++ -.|||.+.+|..+|. - + ...
T Consensus 520 s~kE~~~~~v~~~v~~e~~~~~~~~fld~is~~~~~~~~~p~~p~v~k~glm~kr~~gr~--------~----~---~~~ 584 (800)
T KOG2059|consen 520 SWKEPLMPTVFETVTEEQHFIAVKVFLDEISSVGDRSSLSPQEPVVLKEGLMIKRAQGRG--------R----F---GKK 584 (800)
T ss_pred hhhhhhhHHHHHHHHHhHhHHHHHhhhhcccccccccccCCCCCceecccceEecccccc--------c----h---hhh
Confidence 456888888877544 235556777886 455554444443 345665555432211 1 1 113
Q ss_pred CCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcc-cCCcceeEEEEeCceEEEEEeCchhh
Q 001322 246 NWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKE-RNPLRHAFKVTCGVRSIRLRTRTGAK 324 (1100)
Q Consensus 246 ~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~r~l~l~~~~~~~ 324 (1100)
.++||||-+...-|.|-++|....+..|=|=+-. ....++| +-..++-|+|....|++.+.|++--+
T Consensus 585 ~FKKryf~LT~~~Ls~~Ksp~~q~~~~Ipl~nI~------------avEklee~sF~~knv~qVV~~drtly~Q~~n~vE 652 (800)
T KOG2059|consen 585 NFKKRYFRLTTEELSYAKSPGKQPIYTIPLSNIR------------AVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVE 652 (800)
T ss_pred hhhheEEEeccceeEEecCCccCcccceeHHHHH------------HHHHhhhhccCCCceEEEEecCcceeEecCCchH
Confidence 5679999999999999999977766665443321 1111111 22346778888888999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 001322 325 VRDWVAAINDAGLRPPEGWCHPHRFGSFAP 354 (1100)
Q Consensus 325 ~~~w~~~i~~~~~~~~~~~~~~~rf~sfap 354 (1100)
+.+|..+|..... +..+|..+|-|
T Consensus 653 andWldaL~kvs~------~N~~rLas~HP 676 (800)
T KOG2059|consen 653 ANDWLDALRKVSC------CNQNRLASYHP 676 (800)
T ss_pred HHHHHHHHHHHhc------cCcchhhhcCC
Confidence 9999999988753 24455555555
No 149
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.76 E-value=1.2 Score=44.30 Aligned_cols=87 Identities=22% Similarity=0.241 Sum_probs=54.5
Q ss_pred CCCceEEEEEcCCeEEEeeCCC--CCCccEE--EEEc---CCCCCCCCCCCccccchhhcccCCcceeEEEEeCc-----
Q 001322 245 DNWQKVWAVLKPGFLALLADPF--DTKPMDI--IVFD---VLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV----- 312 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~--~~~~~~v--~lfD---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----- 312 (1100)
..|+++|+||.+.=|.+++... +.++..+ ++.| ..|....-...++.-+ .++...+=|+|+...
T Consensus 18 rGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a----~~kDiP~If~I~~~~~~~~~ 93 (122)
T cd01243 18 KGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHA----SKKDIPCIFRVTTSQISASS 93 (122)
T ss_pred cCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHcccc----CcccCCeEEEEEEecccCCC
Confidence 3699999999999988886433 2233333 3334 3333210001111111 234556777777653
Q ss_pred --eEEEEEeCchhhHHHHHHHHHhc
Q 001322 313 --RSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 313 --r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
..+-+-+.|...-.+|+.++++.
T Consensus 94 ~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 94 SKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred CccEEEEEeCCchHHHHHHHHHHHH
Confidence 78889999999999999999874
No 150
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=90.98 E-value=0.36 Score=48.93 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 171 KVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 171 r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
+..||.||+.+...+.+++...+..|||.
T Consensus 112 ~a~lE~fL~Ria~HP~l~~d~~f~~FLe~ 140 (141)
T cd07291 112 VQVHEVFLQRLSSHPSLSKDRNFHIFLEY 140 (141)
T ss_pred HHHHHHHHHHHhhCCeeccCcchhhhccC
Confidence 34599999999999999999999999984
No 151
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=90.80 E-value=2.1 Score=48.47 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchh
Q 001322 763 ESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAAS 842 (1100)
Q Consensus 763 ~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s 842 (1100)
.+|.+...++|++|++-|=|----|+-. .|..-|.++. .+++|-|||++... .
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~---------dIf~DLleAa-----~kR~VpVYiLLD~~-------------~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV---------DIFCDLLEAA-----NKRGVPVYILLDEQ-------------N 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH---------HHHHHHHHHH-----HhcCCcEEEEechh-------------c
Confidence 3799999999999999999986666543 4555565443 23599999999743 1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccccccccccc---cccCCCCccccceeeeeeEEEEeCcEEEEcccc
Q 001322 843 VRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISFYGLRAYG---RLFEDGPVATSQVYVHSKVMIIDDSIALIGSAN 919 (1100)
Q Consensus 843 ~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f~~Lr~~~---~~~~~g~~vte~iyvHSKlmIVDD~~~iIGSAN 919 (1100)
++.. ++.-.+ ++++... +.....|+-. -....|.-+ ..-+|.|.||||.+.|+.||.-
T Consensus 186 ~~~F---------------l~Mc~~-~~v~~~~-~~nmrVRsv~G~~y~~rsg~k~--~G~~~eKF~lvD~~~V~~GSYS 246 (284)
T PF07894_consen 186 LPHF---------------LEMCEK-LGVNLQH-LKNMRVRSVTGCTYYSRSGKKF--KGQLKEKFMLVDGDKVISGSYS 246 (284)
T ss_pred ChHH---------------HHHHHH-CCCChhh-cCCeEEEEecCCeeecCCCCee--eCcccceeEEEecccccccccc
Confidence 1221 222222 3444321 1111111110 000011101 1368999999999999999998
Q ss_pred cCcCccCCCCCcceeEEEEcCcccccccCCCCcchhhhHHHHHHHHHh
Q 001322 920 INDRSLLGSRDSEIGVLIEDKESVDSFMGGKPWKAGKLCLSLRLSLWS 967 (1100)
Q Consensus 920 iN~RSm~G~~DsEi~v~I~d~~~~~s~m~G~~~~ag~fa~~LR~~L~~ 967 (1100)
+..-|- ..|.-+..++.. +.+ -.|-.++|. |++
T Consensus 247 FtWs~~--~~~r~~~~~~tG-q~V-----------e~FD~EFR~-LyA 279 (284)
T PF07894_consen 247 FTWSSS--RVHRNLVTVLTG-QIV-----------ESFDEEFRE-LYA 279 (284)
T ss_pred eeeccc--ccccceeEEEec-ccc-----------chHhHHHHH-HHH
Confidence 887665 355555555443 233 348888886 554
No 152
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.93 E-value=0.55 Score=45.98 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=53.1
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEE---EEcCCCCCCCCCCCccccch--hhcccCCcceeEEEE-----e-Cce
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDII---VFDVLPASDGNGEGRVSLAT--EVKERNPLRHAFKVT-----C-GVR 313 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~---lfD~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~-----~-~~r 313 (1100)
..|.|+||++|-|-|-|+-.-.+..++|.. .|+. .+|..+. .-+-..|+.|+|.|. + +++
T Consensus 14 KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~---------~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~ 84 (114)
T cd01259 14 KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHG---------HNVYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQ 84 (114)
T ss_pred ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhccc---------CcEEEEechhhccCCCCCceEEEeccccCcccch
Confidence 479999999999999998544444455433 3442 1232222 112245778998773 2 257
Q ss_pred EEEEEeC-chhhHHHHHHHHHhc
Q 001322 314 SIRLRTR-TGAKVRDWVAAINDA 335 (1100)
Q Consensus 314 ~l~l~~~-~~~~~~~w~~~i~~~ 335 (1100)
.|+.-|. ++.....|+.+|+-+
T Consensus 85 ~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 85 SIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred hheeeccCCHHHHHHHHHHHHHH
Confidence 7777775 466778999998865
No 153
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=89.76 E-value=0.69 Score=46.91 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhccccChhhhhhhhhc
Q 001322 169 RAKVAMQQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 169 r~r~~LE~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
+++..+|.||+.+...+.+++...+..|||.
T Consensus 110 k~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 110 KTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 4456789999999999999999999999985
No 154
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=0.3 Score=59.75 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=63.5
Q ss_pred ceeEEEEEEEee-----eeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccc
Q 001322 62 MLLSYTIEVQYK-----QFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAV 136 (1100)
Q Consensus 62 ~~~~YtIEl~hG-----~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~ 136 (1100)
.+..|.|+-+-- ...=+|.|+|+||.-||..|.. .++..+ +| |-.+..
T Consensus 127 ~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~------------~~p~~~--iP--plP~k~----------- 179 (503)
T KOG2273|consen 127 TYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLS------------KYPGRI--IP--PLPEKS----------- 179 (503)
T ss_pred ceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHH------------HCCCCe--eC--CCCchh-----------
Confidence 467787776533 4556999999999999997763 122111 22 210010
Q ss_pred ccccccccCCCCCCCCCCCCCCccc-CCCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcccc
Q 001322 137 NHDESSKKRDVPANAALPVIRPALG-RQHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEASKL 202 (1100)
Q Consensus 137 ~~~~~~~~~~~p~~~~~~~~r~~l~-~~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS~~ 202 (1100)
+.. ....+ ..+.+.++||+.|+.||+.+...+.+++...+..||+....
T Consensus 180 ----------~~~-------~~~~~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~ 229 (503)
T KOG2273|consen 180 ----------IVG-------SKSGDSFSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSK 229 (503)
T ss_pred ----------hhh-------ccccCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhccccc
Confidence 000 00111 12345668889999999999999999999999999998854
No 155
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.57 E-value=0.52 Score=45.42 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=50.2
Q ss_pred CCCceEEEEEcC----CeEEEeeCCCCCCccEEEEEcCCCCCC------CCCCCccccchhhcccCCcceeEEEEeCceE
Q 001322 245 DNWQKVWAVLKP----GFLALLADPFDTKPMDIIVFDVLPASD------GNGEGRVSLATEVKERNPLRHAFKVTCGVRS 314 (1100)
Q Consensus 245 ~~w~krW~vvk~----s~l~~~~~~~~~~~~~v~lfD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~ 314 (1100)
.+|.||||+++. .|.++.-.-....|.+.+-.|. +..+ ++-.+.+ +-.+-++=|...--+..
T Consensus 17 KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldG-yTvDy~~~~~~~~~~~~-------~~~gg~~ff~avkegd~ 88 (117)
T cd01234 17 KKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDG-YTVDYMPESDPDPNSEL-------SLQGGRHFFNAVKEGDE 88 (117)
T ss_pred hhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecc-eEEeccCCCCCCccccc-------ccccchhhhheeccCcE
Confidence 589999999985 2333332223445777777774 2111 0000001 01122344555555678
Q ss_pred EEEEeCchhhHHHHHHHHHhcc
Q 001322 315 IRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 315 l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
+++-+.++-.-.-|++++..+.
T Consensus 89 ~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 89 LKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred EEEeccchHHHHHHHHHHHHHc
Confidence 9999999888889999998875
No 156
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=85.54 E-value=1.2 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.285 Sum_probs=21.8
Q ss_pred HHHHHHHHhhccccChhhhhhhhhc
Q 001322 175 QQYLNHFLGNMDIVNSREVCKFLEA 199 (1100)
Q Consensus 175 E~YL~~lL~~~~~~~~~~l~~FLev 199 (1100)
|.||+.+-..+.++++..+..|||.
T Consensus 116 e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 116 EVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHhccCCeeecCHhHHhhhcC
Confidence 5788888888888999999999985
No 157
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=84.95 E-value=4.2 Score=39.63 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.8
Q ss_pred eeEEEEEEEeeeeEEEEEEehhhHHHHHHHHH
Q 001322 63 LLSYTIEVQYKQFKWKLVKKASQVFYLHFALK 94 (1100)
Q Consensus 63 ~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK 94 (1100)
.++|-|.++-..=.|.|+|+|-||..|...|-
T Consensus 26 ~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LH 57 (114)
T cd07278 26 ELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLH 57 (114)
T ss_pred ceEEEEEEEeCCcceEEEeeHHHHHHHHHHHH
Confidence 57999999999999999999999999887654
No 158
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=83.87 E-value=4.8 Score=39.42 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=26.7
Q ss_pred eeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHH
Q 001322 63 LLSYTIEVQYKQFKWKLVKKASQVFYLHFALKR 95 (1100)
Q Consensus 63 ~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~ 95 (1100)
-++|.|.++--.=.|.|+|+|-||..|...|-+
T Consensus 27 e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHr 59 (115)
T cd07298 27 ELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHL 59 (115)
T ss_pred CeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHH
Confidence 468888777655599999999999999876653
No 159
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=82.88 E-value=1.9 Score=56.07 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=57.3
Q ss_pred eeEEEEEEEeee--eEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccc
Q 001322 63 LLSYTIEVQYKQ--FKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDE 140 (1100)
Q Consensus 63 ~~~YtIEl~hG~--fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 140 (1100)
..+|.||+++-. -.=-|.|+|.+|..||.+|+. +...+ .||.-||
T Consensus 1392 ~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~------------~Fp~~--~Lp~fP~------------------- 1438 (1639)
T KOG0905|consen 1392 IYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRA------------RFPSM--KLPSFPH------------------- 1438 (1639)
T ss_pred eEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHH------------hCccc--cCCCCCc-------------------
Confidence 679999998763 233478999999999998885 11111 1221111
Q ss_pred ccccCCCCCCCCCCCCCCcccCC--CCccHHHHHHHHHHHHHHHhhc-cccChhhhhhhh
Q 001322 141 SSKKRDVPANAALPVIRPALGRQ--HSMSDRAKVAMQQYLNHFLGNM-DIVNSREVCKFL 197 (1100)
Q Consensus 141 ~~~~~~~p~~~~~~~~r~~l~~~--~~~~~r~r~~LE~YL~~lL~~~-~~~~~~~l~~FL 197 (1100)
+=.+|+. ..+.++|+..|+.||..|+... .+++..-++-||
T Consensus 1439 ----------------~~~~grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFF 1482 (1639)
T KOG0905|consen 1439 ----------------RIHLGRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFF 1482 (1639)
T ss_pred ----------------eeeecccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeee
Confidence 1123322 4567888899999999999754 467777777775
No 160
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=82.66 E-value=8.5 Score=44.83 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=70.4
Q ss_pred HHHHHHhcc-----cEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHh--hcchhhhHHH
Q 001322 378 IASSIEDAK-----SEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL--KINSVYSKRK 450 (1100)
Q Consensus 378 l~~aI~~Ak-----~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l--~~~s~~~k~~ 450 (1100)
+++.|++|- .+|-|| |.| -.....+.++|.+||+.|-+|.++| . ....+ .-|-.|. +.
T Consensus 23 vv~fl~eAA~DP~V~aIk~T---------LYR---~a~~S~iv~aLi~AA~nGK~Vtv~v-E-LkARFDEe~Ni~Wa-~~ 87 (352)
T PF13090_consen 23 VVDFLREAAEDPDVLAIKIT---------LYR---VASNSPIVNALIEAAENGKQVTVLV-E-LKARFDEENNIHWA-KR 87 (352)
T ss_dssp HHHHHHHHCC-TTEEEEEEE---------ESS---S-TT-HHHHHHHHHHHTT-EEEEEE-S-TTSSSTTCCCCCCC-HH
T ss_pred HHHHHHHHhcCCCccEEEEE---------EEe---cCCCCHHHHHHHHHHHcCCEEEEEE-E-EeccccHHHHhHHH-hh
Confidence 444566663 266664 444 2346799999999999999999987 1 11111 1123344 35
Q ss_pred hhccCCCeEEEEcCCCcccCcccccCcceEEEEeC-------cEEEEccccCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 001322 451 LLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVDY-------QICFIGGLDLCFGRYDTFEHKIGDNPPLIWPGKDYYNP 523 (1100)
Q Consensus 451 L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID~-------~vAfvGGiNL~~GRwDt~~H~l~D~~~~~~pG~dY~n~ 523 (1100)
|.. +|++|.. . ...+--|.|+++|=. ..+++|.=|. |.
T Consensus 88 Le~--aGv~Viy-G------~~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNy--------------------------Ne 132 (352)
T PF13090_consen 88 LEE--AGVHVIY-G------VPGLKVHAKICLIVRREGGGLRRYAHLGTGNY--------------------------NE 132 (352)
T ss_dssp HHH--CT-EEEE---------TT-EE--EEEEEEEEETTEEEEEEEEESS-S--------------------------ST
T ss_pred HHh--cCeEEEc-C------CCChhheeeEEEEEEEeCCcEEEEEEEcCCCc--------------------------Cc
Confidence 553 7999863 1 112467999999932 4788887665 11
Q ss_pred CCCCCCCccccccccccCCCCCCCCeEEEEEEEECh-HHHHHHHHHHH
Q 001322 524 RESEPNSWEDTMRDELDRGKYPRMPWHDIHCALWGP-PCRDVARHFVQ 570 (1100)
Q Consensus 524 r~~d~~~~~~~~~~~ldr~~~~r~pWhDv~~~v~Gp-aa~dl~~~F~q 570 (1100)
++.+ -+-|.++...-| .+.|+...|..
T Consensus 133 -------------------~TAr-~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 133 -------------------KTAR-IYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp -------------------THCC-CEEEEEEEE--HHHHHHHHHHHHH
T ss_pred -------------------cchh-heecceeecCCHHHHHHHHHHHHH
Confidence 1222 467999888876 58889988853
No 161
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=81.54 E-value=2.2 Score=49.55 Aligned_cols=93 Identities=23% Similarity=0.442 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCccccccc
Q 001322 800 RVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISF 879 (1100)
Q Consensus 800 ~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f 879 (1100)
.|.+||. +|+++| =+|.|++-+..-|...-+ ++|. ++|.+ .|+.+ +
T Consensus 51 ~iv~aLi----~AA~nG--K~Vtv~vELkARFDEe~N----------i~Wa------------~~Le~-aGv~V-----i 96 (352)
T PF13090_consen 51 PIVNALI----EAAENG--KQVTVLVELKARFDEENN----------IHWA------------KRLEE-AGVHV-----I 96 (352)
T ss_dssp HHHHHHH----HHHHTT---EEEEEESTTSSSTTCCC----------CCCC------------HHHHH-CT-EE-----E
T ss_pred HHHHHHH----HHHHcC--CEEEEEEEEeccccHHHH----------hHHH------------hhHHh-cCeEE-----E
Confidence 5777776 566664 488888887776753321 2232 45666 48754 2
Q ss_pred ccccccccccCCCCccccceeeeeeEEEEeC-------cEEEEcccccCcCccCCCCCcceeEEEEcCcc
Q 001322 880 YGLRAYGRLFEDGPVATSQVYVHSKVMIIDD-------SIALIGSANINDRSLLGSRDSEIGVLIEDKES 942 (1100)
Q Consensus 880 ~~Lr~~~~~~~~g~~vte~iyvHSKlmIVDD-------~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~~ 942 (1100)
|++ . .+-||||+++|=- +++-+|+-|.|...-. .=+-+++..-|++.
T Consensus 97 yG~--------~------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~~i 150 (352)
T PF13090_consen 97 YGV--------P------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADPEI 150 (352)
T ss_dssp E----------T------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--HHH
T ss_pred cCC--------C------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCHHH
Confidence 333 1 2589999998732 7999999999999873 66777777777664
No 162
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=81.09 E-value=4.5 Score=51.25 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhccc--cChhhhhhhhhccccCCCCCCCCCcceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceE
Q 001322 173 AMQQYLNHFLGNMDI--VNSREVCKFLEASKLSFSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKV 250 (1100)
Q Consensus 173 ~LE~YL~~lL~~~~~--~~~~~l~~FLevS~~sf~~~~g~kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~kr 250 (1100)
.-|+-|..+|+...+ ..+--|.+|+-.-.+-|-.+.-..-|+|.|++|-- + ++-. -..+.+-|
T Consensus 990 ~aekvleqvLqw~~l~csa~lvvkkh~~~q~~~~~~dr~gs~k~G~lKirEe----~----srll-------~g~~fqdr 1054 (1186)
T KOG1117|consen 990 YAEKVLEQVLQWSSLACSAYLVVKKHLTAQAIKHCSDRLGSIKEGILKIREE----P----SRLL-------SGNKFQDR 1054 (1186)
T ss_pred hHHHHHHHHHhhhccCCcceEEeehhhhHhhhchhhhcccCcccceEEeccC----c----cccc-------cCCccceE
Confidence 335666666665333 24445555555555544333322458898887732 1 1100 11456779
Q ss_pred EEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHH
Q 001322 251 WAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVA 330 (1100)
Q Consensus 251 W~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~ 330 (1100)
+||++++||+.+++-.+.+- |..+.++ ...+.+|-.-|-+.+.-.||+.-.-.....+.|.+.+...+|+.
T Consensus 1055 yfilng~~l~lyke~KssKh------ek~wpl~---s~k~Y~GvkkklKpPt~wg~T~i~ekhh~~l~cd~s~~~~ewft 1125 (1186)
T KOG1117|consen 1055 YFILNGGCLFLYKEVKSSKH------EKEWPLS---SMKVYLGVKKKLKPPTSWGFTAISEKHHWYLCCDSSSEQTEWFT 1125 (1186)
T ss_pred EEEecCcEEEEeehhhcccc------ccccccc---cceEEeccccccCCCCccceeeeeecceEEEecCCccccchhhh
Confidence 99999999999987666552 2222221 12345554434456677899888777789999999999999999
Q ss_pred HHHhcc
Q 001322 331 AINDAG 336 (1100)
Q Consensus 331 ~i~~~~ 336 (1100)
.|-.+-
T Consensus 1126 s~fkaq 1131 (1186)
T KOG1117|consen 1126 SIFKAQ 1131 (1186)
T ss_pred hhhhhh
Confidence 887653
No 163
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=80.94 E-value=14 Score=39.59 Aligned_cols=110 Identities=21% Similarity=0.184 Sum_probs=67.3
Q ss_pred EEEEecH--HHHHHHHHHHHHhcccEEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHhhc
Q 001322 365 AQWFVDG--KAAFEAIASSIEDAKSEIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALALKI 442 (1100)
Q Consensus 365 v~~lvdG--~~~f~al~~aI~~Ak~sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l~~ 442 (1100)
.++...| +-...++...|+.|++...+. .|+-. ++ -.-|.+.|..+..+||++|||-.+....
T Consensus 29 ~~li~n~~ne~il~~Li~~l~k~~ef~IsV-------aFit~---sG-~sll~~~L~d~~~Kgvkgkilts~Ylnf---- 93 (198)
T COG3886 29 PKLISNGYNEKILPRLIDELEKADEFEISV-------AFITE---SG-LSLLFDLLLDLVNKGVKGKILTSDYLNF---- 93 (198)
T ss_pred ceeeeCCCchhHHHHHHHHHhcCCeEEEEE-------EEeeC---cc-HHHHHHHHHHHhcCCceEEEecccccCc----
Confidence 3444444 368899999999999977774 33433 22 4567888999999999999997554321
Q ss_pred chhhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEEe---CcEEEEccccCC
Q 001322 443 NSVYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIVD---YQICFIGGLDLC 496 (1100)
Q Consensus 443 ~s~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVID---~~vAfvGGiNL~ 496 (1100)
...-.-+.|.. ..||++.-+-.. ...+|-|-.|.- +-.|++|+.||+
T Consensus 94 TdP~al~~Ll~-~~nve~r~~~~~------~~~fH~KgYiFe~~~~~taiiGSsNlt 143 (198)
T COG3886 94 TDPVALRKLLM-LKNVELRVSTIG------SANFHTKGYIFEHNTGITAIIGSSNLT 143 (198)
T ss_pred cCHHHHHHHHh-hhccceEEEecC------ccccccceeEEEecceEEEEEccchhh
Confidence 11111123332 245776544211 123455555442 235999999996
No 164
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=80.90 E-value=1.2 Score=53.82 Aligned_cols=108 Identities=18% Similarity=0.259 Sum_probs=70.0
Q ss_pred CCCCCCCCcceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCC
Q 001322 204 FSPEYGPKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASD 283 (1100)
Q Consensus 204 f~~~~g~kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~ 283 (1100)
|..+.|-...||-|+-+++ +| .+. .||..|||-+..--|.|-+. .++.-++---+|.
T Consensus 728 Fvn~~gqp~iEGQLKEKKG---------------rW-Rf~-kRW~TrYFTLSgA~L~~~kg-~s~~dS~~~~IDl----- 784 (851)
T KOG3723|consen 728 FVNQDGQPLIEGQLKEKKG---------------RW-RFI-KRWKTRYFTLSGAQLLFQKG-KSKDDSDDCPIDL----- 784 (851)
T ss_pred eecCCCCchhcchhhhhcc---------------ch-hhh-hhhccceEEecchhhhcccC-CCCCCCCCCCccH-----
Confidence 5666776789998765531 22 122 79999999999999999643 2222111111222
Q ss_pred CCCCCccc-cchhhcccCCcceeEEEEeCceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 284 GNGEGRVS-LATEVKERNPLRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 284 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
+.--.+. +++. +.+..++..|.|.....+++||+++++.+.+|.+.+.-+.
T Consensus 785 -~~IRSVk~v~~k-r~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 785 -SKIRSVKAVAKK-RRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred -HHhhhHHHHHhh-hhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHH
Confidence 1111122 4431 1233467889999999999999999999999999887654
No 165
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=80.31 E-value=8 Score=48.06 Aligned_cols=106 Identities=22% Similarity=0.247 Sum_probs=66.3
Q ss_pred ecHHHHHHHHHHHHHhccc---EEEEeeecCCceeEEEcCCCCchhHHHHHHHHHHhhCCcEEEEEEechhhhHh-hcch
Q 001322 369 VDGKAAFEAIASSIEDAKS---EIFICGWWLCPELYLRRPFHNHASSRLDALLEAKAKQGVQIYILLYKEVALAL-KINS 444 (1100)
Q Consensus 369 vdG~~~f~al~~aI~~Ak~---sI~I~~WwlsPe~yL~rp~~~~~~~rL~~lL~~aA~rGVkVrILl~d~~~~~l-~~~s 444 (1100)
.-.-+-|..+.+.|++|-. -+-| -+-|.| .+...+|.++|.+||+.|-+|-+||= --.-.- .-|-
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLAI-------KqTLYR---t~~dSpIV~ALi~AA~nGKqVtvlVE-LkARFDEE~NI 416 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLAI-------KQTLYR---TSKDSPIVRALIDAAENGKQVTVLVE-LKARFDEEANI 416 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEEE-------EEEEEe---cCCCCHHHHHHHHHHHcCCeEEEEEE-EhhhcChhhhh
Confidence 3445678889999999964 3333 233555 23467899999999999999999871 100000 1122
Q ss_pred hhhHHHhhccCCCeEEEEcCCCcccCcccccCcceEEEE----eCc---EEEEccccC
Q 001322 445 VYSKRKLLSIHENVRVLRYPDHFASGVYLWSHHEKLVIV----DYQ---ICFIGGLDL 495 (1100)
Q Consensus 445 ~~~k~~L~~l~~nI~V~r~p~~~~~~~~~~~hHqKivVI----D~~---vAfvGGiNL 495 (1100)
.|. +.|. .+|++|.. |...+..|.|+++| |++ .+-+|.=|.
T Consensus 417 ~WA-k~LE--~AGvhVvy-------G~~glKtHAKm~lVvRrE~~~lrrY~HlGTGNY 464 (696)
T COG0855 417 HWA-KRLE--RAGVHVVY-------GVVGLKTHAKMLLVVRREGGKLRRYVHLGTGNY 464 (696)
T ss_pred HHH-HHHH--hCCcEEEe-------cccceeeeeeEEEEEEecCCcEEEEEEecCCCC
Confidence 233 4555 48999863 12345779999988 333 455555444
No 166
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.50 E-value=3.9 Score=48.46 Aligned_cols=87 Identities=14% Similarity=0.273 Sum_probs=64.6
Q ss_pred eeEEEEEEEeeeeEEEEEEehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccccCcccccccccccccc
Q 001322 63 LLSYTIEVQYKQFKWKLVKKASQVFYLHFALKRRAFFEEIQEKQEQVKEWLQNLGMGDHMAVVQEDDEGDEIAVNHDESS 142 (1100)
Q Consensus 63 ~~~YtIEl~hG~fkWtIkRkykdf~~LH~~LK~~~~~~~~~~~~~~~k~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (1100)
+-.|.+--+|-..- |.|+||||--||.+|.. + +..||+|+
T Consensus 205 ~i~y~ltpt~t~~~--v~rrykhfdwl~~rl~~------------k----f~~i~vp~---------------------- 244 (490)
T KOG2528|consen 205 YIAYQLTPTHTNIS--VSRRYKHFDWLYERLLL------------K----FPLIPVPP---------------------- 244 (490)
T ss_pred eeEeeecccccCcc--hhhcccccHHHHHHHHh------------h----cccccCCC----------------------
Confidence 45677777777664 99999999999997763 1 22356533
Q ss_pred ccCCCCCCCCCCCCCCcccC-CCCccHHHHHHHHHHHHHHHhhccccChhhhhhhhhcc
Q 001322 143 KKRDVPANAALPVIRPALGR-QHSMSDRAKVAMQQYLNHFLGNMDIVNSREVCKFLEAS 200 (1100)
Q Consensus 143 ~~~~~p~~~~~~~~r~~l~~-~~~~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FLevS 200 (1100)
||- +-..|+ ++.+.+.||+.|+.+.+.+.+.+.+..+...+.||-+-
T Consensus 245 ----------Lpd-kq~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 245 ----------LPD-KQVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred ----------CCc-cccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence 332 222343 56677788899999999999999999999999998775
No 167
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.40 E-value=4.3 Score=46.73 Aligned_cols=96 Identities=17% Similarity=0.296 Sum_probs=60.3
Q ss_pred cceeeEEeeeCCCccCCCCCCCccccCCCccccCCCceEEEEEcC--CeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCc
Q 001322 212 LKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQKVWAVLKP--GFLALLADPFDTKPMDIIVFDVLPASDGNGEGR 289 (1100)
Q Consensus 212 gkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~krW~vvk~--s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~ 289 (1100)
-|||+|+|| | .-+..|++|||+++. ++|.|-+.|.+..+.---|= .|.
T Consensus 16 vkEgWlhKr------G--------------E~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLN----------nF~ 65 (516)
T KOG0690|consen 16 VKEGWLHKR------G--------------EHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLN----------NFM 65 (516)
T ss_pred HHhhhHhhc------c--------------hhhhcccceEEEEeeCCceEeeccCCccCCCCccccc----------chh
Confidence 589999887 2 112679999999985 68889888876654321111 111
Q ss_pred cccchhhcccCCcceeEEEEeCceEEE----EEeCchhhHHHHHHHHHhccC
Q 001322 290 VSLATEVKERNPLRHAFKVTCGVRSIR----LRTRTGAKVRDWVAAINDAGL 337 (1100)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~~r~l~----l~~~~~~~~~~w~~~i~~~~~ 337 (1100)
+.-+.-.+-..+..+.|.|...+.+-+ +-+.|...-++|..+|+..+.
T Consensus 66 v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 66 VRDCQTMKTERPRPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred hhhhhhhhccCCCCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 211111222345667888888876543 345677777889999987653
No 168
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.30 E-value=22 Score=35.16 Aligned_cols=78 Identities=13% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCceEEEEEcCCeEEEeeCCCCCC------------ccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeC-c
Q 001322 246 NWQKVWAVLKPGFLALLADPFDTK------------PMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG-V 312 (1100)
Q Consensus 246 ~w~krW~vvk~s~l~~~~~~~~~~------------~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 312 (1100)
.++.|.|.+=|.-|+|++ +...+ ....|-++ .+.+.. .....+..++|.|.+. +
T Consensus 19 ~~q~R~~FLFd~~Li~CK-~~~~~~~~~g~~~~~y~~k~~~~l~-----------~~~V~d-~~d~~~~knaF~I~~~~~ 85 (112)
T cd01261 19 AKHERHVFLFDGLMVLCK-SNHGQPRLPGASSAEYRLKEKFFMR-----------KVDIND-KPDSSEYKNAFEIILKDG 85 (112)
T ss_pred CcceEEEEEecCeEEEEE-eccCcccccccccceEEEEEEEeee-----------eeEEEE-cCCCcccCceEEEEcCCC
Confidence 466899999999999997 32221 11222222 122211 1112236899999985 7
Q ss_pred eEEEEEeCchhhHHHHHHHHHhcc
Q 001322 313 RSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 313 r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
+.+.+-|++..+-.+|++++....
T Consensus 86 ~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 86 NSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHh
Confidence 899999999999999999998754
No 169
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=76.00 E-value=1.8 Score=49.60 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=31.8
Q ss_pred cceeeeeeEEEE----eCcEEEEcccccCc-CccCCCCCcceeEEEEcCc
Q 001322 897 SQVYVHSKVMII----DDSIALIGSANIND-RSLLGSRDSEIGVLIEDKE 941 (1100)
Q Consensus 897 e~iyvHSKlmIV----DD~~~iIGSANiN~-RSm~G~~DsEi~v~I~d~~ 941 (1100)
..+-+|+||.+- =+..++|||||+.- -.+. .+-.| ++++.|+.
T Consensus 77 ~~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 77 PDPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCCCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 446899999998 23679999999987 3332 47788 66667764
No 170
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=75.90 E-value=12 Score=46.76 Aligned_cols=109 Identities=21% Similarity=0.400 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCchhHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCccccccc
Q 001322 800 RVLESLYRRILRAYNEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGQNSILHNLYALLGPKTHDYISF 879 (1100)
Q Consensus 800 ~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~F~G~~~~~~~~s~r~im~~qyrtI~rG~~si~~~L~~~~G~~~~~Yi~f 879 (1100)
.|.+||+ .|+++|+ +|.||+-+..-|... +=++|. ++|.+ +|+.+ +
T Consensus 385 pIV~ALi----~AA~nGK--qVtvlVELkARFDEE----------~NI~WA------------k~LE~-AGvhV-----v 430 (696)
T COG0855 385 PIVRALI----DAAENGK--QVTVLVELKARFDEE----------ANIHWA------------KRLER-AGVHV-----V 430 (696)
T ss_pred HHHHHHH----HHHHcCC--eEEEEEEEhhhcChh----------hhhHHH------------HHHHh-CCcEE-----E
Confidence 5777776 4556655 566666655555321 235665 44666 48754 2
Q ss_pred ccccccccccCCCCccccceeeeeeEEEEe----C---cEEEEcccccCcCccCCCCCcceeEEEEcCcccccccCCCCc
Q 001322 880 YGLRAYGRLFEDGPVATSQVYVHSKVMIID----D---SIALIGSANINDRSLLGSRDSEIGVLIEDKESVDSFMGGKPW 952 (1100)
Q Consensus 880 ~~Lr~~~~~~~~g~~vte~iyvHSKlmIVD----D---~~~iIGSANiN~RSm~G~~DsEi~v~I~d~~~~~s~m~G~~~ 952 (1100)
|++ . ..-+|||+++|= | +++-+|+.|.|..+-. .=+-+++..-|++
T Consensus 431 yG~-----~---------glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~----------- 483 (696)
T COG0855 431 YGV-----V---------GLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPE----------- 483 (696)
T ss_pred ecc-----c---------ceeeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHH-----------
Confidence 332 1 147899999873 3 7899999999999873 4455555554544
Q ss_pred chhhhHHHHHHHHHhhccCCCc
Q 001322 953 KAGKLCLSLRLSLWSEHLGLRS 974 (1100)
Q Consensus 953 ~ag~fa~~LR~~L~~eHLG~~~ 974 (1100)
+++.++. ||-...|...
T Consensus 484 ----i~~Dv~~-lFn~ltGy~~ 500 (696)
T COG0855 484 ----IGADVTD-LFNFLTGYAR 500 (696)
T ss_pred ----HHHHHHH-HHHHhcCCCc
Confidence 5566654 7777777654
No 171
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=65.40 E-value=41 Score=33.49 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.5
Q ss_pred cceeEEEEeCceEEEEEeCchhhHHHHHHHHHhc
Q 001322 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
..++|.|.++.|.|.|.|.+.....-|+.+|.-.
T Consensus 87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L 120 (123)
T PF12814_consen 87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYL 120 (123)
T ss_pred cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999764
No 172
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=65.30 E-value=9.7 Score=46.13 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=53.4
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccc--hhhcccCCcceeEEE-----EeCceEEEE
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLA--TEVKERNPLRHAFKV-----TCGVRSIRL 317 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i-----~~~~r~l~l 317 (1100)
..|+|-+||+|.|-|.|.-.-.+..+++.-.+-- +. +.+|..+ -.-|-..++.|||.| .|..|.|++
T Consensus 331 KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~-~~-----~snVYt~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~ 404 (622)
T KOG3751|consen 331 KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLAD-LH-----SSNVYTGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKM 404 (622)
T ss_pred ccceeEEEEEecCcceEccCCCCCCchhhHHHHh-cc-----cCceEEeecchhccCCCCCceEEeeeccccCcccceee
Confidence 4699999999999999984433445666543321 11 1233222 111234567888876 345688998
Q ss_pred EeCc-hhhHHHHHHHHHhc
Q 001322 318 RTRT-GAKVRDWVAAINDA 335 (1100)
Q Consensus 318 ~~~~-~~~~~~w~~~i~~~ 335 (1100)
.|.- +.....|..+|+-.
T Consensus 405 lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 405 LCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred eecccchhHHHHHHHHHHH
Confidence 8854 55567899888764
No 173
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=64.12 E-value=21 Score=45.27 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=54.8
Q ss_pred eEEEEEcCCeEEEeeC--CCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeC---ceEEEEEeCchh
Q 001322 249 KVWAVLKPGFLALLAD--PFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCG---VRSIRLRTRTGA 323 (1100)
Q Consensus 249 krW~vvk~s~l~~~~~--~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~r~l~l~~~~~~ 323 (1100)
+|+||++..++.|+++ .....|..=.++|..-..+ ..|.++. .-..=|-|.|-|. ++++++-|.+..
T Consensus 25 ~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVe-------d~Gr~~~-~g~~~yvl~~Yn~~~~~~~~~~~a~~~e 96 (719)
T PLN00188 25 MRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE-------DRGLKTH-HGHMVYVLSVYNKKEKYHRITMAAFNIQ 96 (719)
T ss_pred eEEEEEecchhhhcccCCccccccceeeccCCCceEe-------ecCceEE-cCceEEEEEEecCCCccccEEEecCCHH
Confidence 7999999999999987 2334566666777532221 1111110 0012244566554 679999999999
Q ss_pred hHHHHHHHHHhccCC
Q 001322 324 KVRDWVAAINDAGLR 338 (1100)
Q Consensus 324 ~~~~w~~~i~~~~~~ 338 (1100)
++..|+.+++++..+
T Consensus 97 ea~~W~~a~~~a~~q 111 (719)
T PLN00188 97 EALIWKEKIESVIDQ 111 (719)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988753
No 174
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=63.55 E-value=4.5 Score=48.95 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=28.0
Q ss_pred ceeeeeeEEEEeC-------cEEEEcccccCcCccCCC----------CCcceeEEEE
Q 001322 898 QVYVHSKVMIIDD-------SIALIGSANINDRSLLGS----------RDSEIGVLIE 938 (1100)
Q Consensus 898 ~iyvHSKlmIVDD-------~~~iIGSANiN~RSm~G~----------~DsEi~v~I~ 938 (1100)
.+..|+|+++... .|+++|||||..-.. |. ++.|++|++.
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEe
Confidence 4688999999876 599999999975444 44 8999999994
No 175
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=63.27 E-value=18 Score=39.87 Aligned_cols=52 Identities=29% Similarity=0.261 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecC
Q 001322 761 LEESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPL 827 (1100)
Q Consensus 761 ~E~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~ 827 (1100)
....|.+-..++|++|++.|||.... .....|.+.|.+|.+ +|++|.+++..
T Consensus 7 g~~~I~~~i~elI~~Ae~eI~is~~~-------------~~l~~l~~~L~~a~~--rGV~V~li~~~ 58 (233)
T PF11495_consen 7 GRETILERIRELIENAESEIYISIPP-------------EFLEELRDELEEAVD--RGVKVKLIVFG 58 (233)
T ss_dssp SHHHHHHHHHHHHHC-SSEEEEEE-G-------------GGHHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred CHHHHHHHHHHHHHHhheEEEEEcCH-------------HHHHHHHHHHHHHHH--CCCEEEEEEeC
Confidence 36689999999999999999998542 233444444445544 48999999874
No 176
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=61.33 E-value=9.7 Score=44.69 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=31.8
Q ss_pred CCCceeEEEEEEEeeeeE-----EEEEEehhhHHHHHHHHHH
Q 001322 59 ISPMLLSYTIEVQYKQFK-----WKLVKKASQVFYLHFALKR 95 (1100)
Q Consensus 59 ~~~~~~~YtIEl~hG~fk-----WtIkRkykdf~~LH~~LK~ 95 (1100)
..+.+++|.|.+.-..-+ |+|.|+|++|..||.+||.
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~ 172 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKR 172 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHH
Confidence 345588999999877666 9999999999999999985
No 177
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=55.59 E-value=87 Score=33.88 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCC
Q 001322 763 ESIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPG 830 (1100)
Q Consensus 763 ~sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~ 830 (1100)
+-|....+..|+.|+.|..+. =||+.. |-+. +.+.|. .+ .++|++++|+...--+
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s-G~sl----l~~~L~----d~--~~Kgvkgkilts~Yln 92 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES-GLSL----LFDLLL----DL--VNKGVKGKILTSDYLN 92 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc-cHHH----HHHHHH----HH--hcCCceEEEecccccC
Confidence 479999999999999988887 466653 2121 223333 22 3579999999875433
No 178
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=53.81 E-value=99 Score=30.36 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=29.7
Q ss_pred cCCcceeEEEEeCce--EEEEEeCchhhHHHHHHHHH
Q 001322 299 RNPLRHAFKVTCGVR--SIRLRTRTGAKVRDWVAAIN 333 (1100)
Q Consensus 299 ~~~~~~~~~i~~~~r--~l~l~~~~~~~~~~w~~~i~ 333 (1100)
....++=|.|....+ .+.|.+.|......|++++.
T Consensus 66 ~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 66 SIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 345688899977777 89999999999999999875
No 179
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=50.74 E-value=41 Score=41.59 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=30.9
Q ss_pred cceeEEEEeCceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
+.|.|.+.-..|.+.|.+.+...-++|+++|..+.
T Consensus 335 ~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~I 369 (623)
T KOG4424|consen 335 LPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAI 369 (623)
T ss_pred CCceEEEecccceEEeecCchhhHHHHHHHHHHHH
Confidence 46778888779999999999999999999998865
No 180
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=44.66 E-value=79 Score=30.51 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred ceeEEEEeCc---eEEEEEeCchhhHHHHHHHHHhcc
Q 001322 303 RHAFKVTCGV---RSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 303 ~~~~~i~~~~---r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
.++|.|.... +++.+.|+|...-+.|.++|..+.
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 5788885443 799999999999999999998764
No 181
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.12 E-value=1e+02 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.9
Q ss_pred CcceeEEEEeCc---eEEEEEeCchhhHHHHHHHHHhc
Q 001322 301 PLRHAFKVTCGV---RSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 301 ~~~~~~~i~~~~---r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
+.++.+.+.... .+.++.+.|...-..|+..|.+.
T Consensus 74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~i 111 (114)
T cd01232 74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREI 111 (114)
T ss_pred CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHH
Confidence 455555555444 58899999999999999999875
No 182
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=39.62 E-value=36 Score=41.30 Aligned_cols=65 Identities=25% Similarity=0.239 Sum_probs=36.1
Q ss_pred eeeeeEEEE---eC-cEEEEcccccCcCccCCCCCcceeEEEEcC-cccccccCCCCcchhhhHHHHHHHHHh
Q 001322 900 YVHSKVMII---DD-SIALIGSANINDRSLLGSRDSEIGVLIEDK-ESVDSFMGGKPWKAGKLCLSLRLSLWS 967 (1100)
Q Consensus 900 yvHSKlmIV---DD-~~~iIGSANiN~RSm~G~~DsEi~v~I~d~-~~~~s~m~G~~~~ag~fa~~LR~~L~~ 967 (1100)
--|||+||. |+ --++|.||||...-. .+-+=+|-+.|- ........+..-.-..|..+|..-|-+
T Consensus 101 ~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw---~~~~q~vw~~d~lP~~~~~~~~~~~~~~~F~~dL~~yL~~ 170 (443)
T PF06087_consen 101 THHSKMMLLFYEDGSLRVVIPTANLTPYDW---NNKTQGVWIQDFLPRLPSSKSSSEESGSRFKKDLVAYLNS 170 (443)
T ss_dssp -B--EEEEEEETTCEEEEEEESS-BSHHHH---CSSB-EEEE---E-B-ECTS-S--SSTTHHHHHHHHHHHT
T ss_pred cccceeEEEEeCCccEEEEEECCCCCHHHH---CCcceeEEEecccCcccccccccCCCCCchHHHHHHHHHH
Confidence 679999997 66 789999999988877 456667777765 333221122222446688888776643
No 183
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=38.46 E-value=18 Score=46.73 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=50.4
Q ss_pred CCCceEEEEEcCC--eEEEeeCCCCCCccEEE-EEcCCCCCCCCCCCccccchhhcccCCccee-EEEEeCceEEEEEeC
Q 001322 245 DNWQKVWAVLKPG--FLALLADPFDTKPMDII-VFDVLPASDGNGEGRVSLATEVKERNPLRHA-FKVTCGVRSIRLRTR 320 (1100)
Q Consensus 245 ~~w~krW~vvk~s--~l~~~~~~~~~~~~~v~-lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~r~l~l~~~ 320 (1100)
.-|..||||+-.. =|-|+++-+++++..+| |.|.. .+..+. ..+-...| |.+....|...+-+.
T Consensus 1648 K~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaeve---------sv~~~~---~k~vdekgffdlktt~rvynf~a~ 1715 (1732)
T KOG1090|consen 1648 KLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVE---------SVALIG---PKTVDEKGFFDLKTTNRVYNFCAQ 1715 (1732)
T ss_pred cccccceeEecCCccceeeecccccccccchhhhhhhh---------hhcccC---ccccCccceeeeehhhHHHHHHhc
Confidence 5699999998543 36777777888888877 33321 111100 01111223 466666777777888
Q ss_pred chhhHHHHHHHHHhc
Q 001322 321 TGAKVRDWVAAINDA 335 (1100)
Q Consensus 321 ~~~~~~~w~~~i~~~ 335 (1100)
+--.+.+|+..|+..
T Consensus 1716 nin~AqqWve~iqsc 1730 (1732)
T KOG1090|consen 1716 NINLAQQWVECIQSC 1730 (1732)
T ss_pred cchHHHHHHHHHHHh
Confidence 888999999998763
No 184
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=37.41 E-value=63 Score=38.42 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcccEEEEEeeecccCCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEecCCCC
Q 001322 764 SIHCAYCSLIEKAEHFIYIENQFFISGLSGDEIIRNRVLESLYRRILRAYNEKKCFRVIIVIPLLPG 830 (1100)
Q Consensus 764 sI~~ayl~aI~~A~hfIYIEnQyFis~~~~~~~v~N~I~~AL~~ri~rA~~~~~gv~V~VVlP~~P~ 830 (1100)
..++...+.|.+||+.|+|.+-|.=. .-.+|++-+..|...++.++|-|++...-|
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~-----------~E~elv~cl~~aL~~~~~L~v~iLlD~~rg 94 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGK-----------LERELVDCLSNALEKNPSLKVSILLDFLRG 94 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccch-----------hHHHHHHHHHHHhccCCCcEEEeehhhhhh
Confidence 48899999999999999999988632 233455555566678899999999986433
No 185
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=34.32 E-value=34 Score=44.45 Aligned_cols=80 Identities=19% Similarity=0.428 Sum_probs=57.6
Q ss_pred CCCceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCceEEEEEeCchhh
Q 001322 245 DNWQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGVRSIRLRTRTGAK 324 (1100)
Q Consensus 245 ~~w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~r~l~l~~~~~~~ 324 (1100)
..|.|+||-+++++++|..+-.+... ++..|..+- .+.. ..+.+..++=|.|.++++...+.+.|+..
T Consensus 289 ~tw~r~~f~~q~~~l~~~~r~~~~~~--~~~~dL~~c-------svk~---~~~~~drr~CF~iiS~tks~~lQAes~~d 356 (785)
T KOG0521|consen 289 KTWKRRWFSIQDGQLGYQHRGADAEN--VLIEDLRTC-------SVKP---DAEQRDRRFCFEIISPTKSYLLQAESEKD 356 (785)
T ss_pred hhHHhhhhhhhccccccccccccccc--cccccchhc-------cccC---CcccccceeeEEEecCCcceEEecCchhH
Confidence 35889999999999999965333222 444554321 1211 12234578999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 001322 325 VRDWVAAINDAG 336 (1100)
Q Consensus 325 ~~~w~~~i~~~~ 336 (1100)
..+|+..|....
T Consensus 357 ~~~Wi~~i~nsi 368 (785)
T KOG0521|consen 357 CQDWISALQNSI 368 (785)
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
No 186
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=30.99 E-value=23 Score=41.10 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=36.1
Q ss_pred HHHHHHHHhhccccCh-hhhhhhhh-ccccCCCCCCC----CCcceeeEEeeeCCCccCCCCCCCccccCCCccccCCCc
Q 001322 175 QQYLNHFLGNMDIVNS-REVCKFLE-ASKLSFSPEYG----PKLKEDYVMAKHLPKISRNDDSRKCCCCPLFTCCNDNWQ 248 (1100)
Q Consensus 175 E~YL~~lL~~~~~~~~-~~l~~FLe-vS~~sf~~~~g----~kgkeg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w~ 248 (1100)
|.|+..+.....-.++ .++..||+ +|...-....| .-.|||++.||.. | ++ .++...|+
T Consensus 241 E~~M~~~~~~~~~~~~~~~v~~FLd~Is~~~~~~~~~~~~~~~~~e~~~~~r~~----~-----~~------~~~~~~~k 305 (313)
T cd05394 241 ETFMCEFFKMFQEETYTKVVKKFLDEISSTETKEPSGVSEPVHLKEGEMYKRAQ----G-----RT------RIGKKNFK 305 (313)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCchhhHHHHHHhhcc----C-----CC------ccccccch
Confidence 5555555322222233 35778875 56555433333 3579999988742 2 11 11224588
Q ss_pred eEEEEEc
Q 001322 249 KVWAVLK 255 (1100)
Q Consensus 249 krW~vvk 255 (1100)
||||.+.
T Consensus 306 kr~~~l~ 312 (313)
T cd05394 306 KRWFCLT 312 (313)
T ss_pred hheeecC
Confidence 9999874
No 187
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=29.45 E-value=98 Score=30.67 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=30.5
Q ss_pred cceeEEEEeCceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 302 LRHAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 302 ~~~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
..+-|-|.+..+.+.|+|.|..+.+.|.+.|..+-
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL 103 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHML 103 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHH
Confidence 44568888889999999999999999999998864
No 188
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.67 E-value=2.3e+02 Score=29.02 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.4
Q ss_pred eeEEEEeCceEEEEEeCchhhHHHHHHHHHhcc
Q 001322 304 HAFKVTCGVRSIRLRTRTGAKVRDWVAAINDAG 336 (1100)
Q Consensus 304 ~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~~~ 336 (1100)
+.+.-..+...+++.|.|...-..|+..|.+..
T Consensus 83 Feiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL 115 (133)
T cd01227 83 FEIWYNAREEVYILQAPTPEIKAAWVNEIRKVL 115 (133)
T ss_pred EEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 333333345588999999999999999988754
No 189
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=27.37 E-value=66 Score=39.97 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=21.8
Q ss_pred CCccHHHHHHHHHHHHHHHhhccccChh
Q 001322 164 HSMSDRAKVAMQQYLNHFLGNMDIVNSR 191 (1100)
Q Consensus 164 ~~~~~r~r~~LE~YL~~lL~~~~~~~~~ 191 (1100)
+.+.++|+..|++||+.+...+.+.++.
T Consensus 217 ~~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 217 DEFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 4566677789999999998888776654
No 190
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.24 E-value=3.5e+02 Score=26.99 Aligned_cols=80 Identities=15% Similarity=0.339 Sum_probs=50.7
Q ss_pred CceEEEEEcCCeEEEeeCCCCCCccEEEEEcCCCCCCCCCCCccccchhhcccCCcceeEEEEeCc-eEEEEEeCchhhH
Q 001322 247 WQKVWAVLKPGFLALLADPFDTKPMDIIVFDVLPASDGNGEGRVSLATEVKERNPLRHAFKVTCGV-RSIRLRTRTGAKV 325 (1100)
Q Consensus 247 w~krW~vvk~s~l~~~~~~~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-r~l~l~~~~~~~~ 325 (1100)
-+.|+|++=++.|++++. +.+... |.|-....+. .+++-+ +.+..+.++.|.|.-.. .++++.|.+...+
T Consensus 28 ~~eRyLvLFp~~LlilS~--s~r~sG-f~yqGkLPL~-----~i~v~~-lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~ 98 (111)
T cd01225 28 KRERYLVLFPNVLLMLSA--SPRMSG-FIYQGKLPLT-----GIIVTR-LEDTEALKNAFEISGPLIERIVVVCNNPQDA 98 (111)
T ss_pred cceeEEEEcCceEEEEEc--CCCccc-eEEeeeeccc-----ccEEec-hHhccCccceEEEeccCcCcEEEEeCCHHHH
Confidence 347899999999999973 333222 3332211110 112111 11233557899997443 6899999999999
Q ss_pred HHHHHHHHhc
Q 001322 326 RDWVAAINDA 335 (1100)
Q Consensus 326 ~~w~~~i~~~ 335 (1100)
.+|+.-++..
T Consensus 99 ~~Wl~hL~~~ 108 (111)
T cd01225 99 QEWVELLNAN 108 (111)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 191
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=24.92 E-value=89 Score=28.85 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=17.5
Q ss_pred hhcccceEEeecccchhhccCCCC
Q 001322 1063 RLQAVRGHLVSFPLDFMCKEDLRP 1086 (1100)
Q Consensus 1063 ~L~~i~G~lV~~Pl~Fl~~e~l~p 1086 (1100)
++...+|||..||+..-.+-.+.+
T Consensus 32 e~~dl~GHLl~YPv~V~~dG~V~~ 55 (74)
T PF12357_consen 32 EVTDLPGHLLKYPVQVDRDGKVTP 55 (74)
T ss_pred ccccCCCccccCCeEEcCCCCEee
Confidence 456778999999998866554444
No 192
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.73 E-value=2.1e+02 Score=34.15 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHHHHHHhhccccChhhhhhhh
Q 001322 166 MSDRAKVAMQQYLNHFLGNMDIVNSREVCKFL 197 (1100)
Q Consensus 166 ~~~r~r~~LE~YL~~lL~~~~~~~~~~l~~FL 197 (1100)
+.+| |..||+||+++-..+.+..+.-+-.||
T Consensus 69 ~~~r-r~~leqylqa~~q~~~l~~s~~~~~fL 99 (407)
T KOG3784|consen 69 LDSR-RRGLEQYLQAVCQDPVLARSELVQKFL 99 (407)
T ss_pred hHHH-HHHHHHHHHHHhcCccccchhhhhHHH
Confidence 3444 569999999999888887776555555
No 193
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=23.14 E-value=3.9e+02 Score=26.34 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=24.0
Q ss_pred eeEEEEeCceEEEEEeCchhhHHHHHHHHHh
Q 001322 304 HAFKVTCGVRSIRLRTRTGAKVRDWVAAIND 334 (1100)
Q Consensus 304 ~~~~i~~~~r~l~l~~~~~~~~~~w~~~i~~ 334 (1100)
+-+++.++. .+++.+.+..+++.|.+.|.+
T Consensus 77 FvLK~~~~~-eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 77 FVLKVDDNT-DIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred EEEEecCCc-eEEEEcCCHHHHHHHHHHHhc
Confidence 445555544 899999999999999999875
No 194
>PF10015 DUF2258: Uncharacterized protein conserved in archaea (DUF2258); InterPro: IPR017140 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.14 E-value=1.5e+02 Score=27.48 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=32.3
Q ss_pred cchhhhHHHHHHHHHhhccCCCccccccccCCCChHHHHHHHHHHHHHhHHHHHHhh
Q 001322 952 WKAGKLCLSLRLSLWSEHLGLRSREVNQIIDPVIDSTYKDIWVATARMNTTIYQDVF 1008 (1100)
Q Consensus 952 ~~ag~fa~~LR~~L~~eHLG~~~~~~~~~~dp~~~~~~~~~W~~~a~~Nt~iy~~vF 1008 (1100)
.-||+||..||+-||+-.-|..+ + +.+=++.|+-|..+|+.+-
T Consensus 7 ViAa~YAdKlRRvlfA~l~~~v~-----------~---~ei~ra~aeLNk~ly~~lv 49 (75)
T PF10015_consen 7 VIAAGYADKLRRVLFAALRGKVP-----------P---EEIVRAAAELNKKLYEKLV 49 (75)
T ss_pred EeehHHHHHHHHHHHHHHcCCCC-----------H---HHHHHHHHHHHHHHHHHHH
Confidence 45789999999999997633322 1 2355889999999998765
No 195
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.42 E-value=4.8e+02 Score=25.91 Aligned_cols=35 Identities=9% Similarity=0.274 Sum_probs=30.2
Q ss_pred CcceeEEEEeCc--eEEEEEeCchhhHHHHHHHHHhc
Q 001322 301 PLRHAFKVTCGV--RSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 301 ~~~~~~~i~~~~--r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
..+++|+|.+.+ ..+.+-|++..+=..|++++...
T Consensus 70 ~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~e 106 (109)
T cd01224 70 TIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFALE 106 (109)
T ss_pred eeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHHh
Confidence 368999999887 56999999999999999998764
No 196
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=20.38 E-value=2e+02 Score=34.86 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=26.4
Q ss_pred ceeEEEEe-CceEEEEEeCchhhHHHHHHHHHhc
Q 001322 303 RHAFKVTC-GVRSIRLRTRTGAKVRDWVAAINDA 335 (1100)
Q Consensus 303 ~~~~~i~~-~~r~l~l~~~~~~~~~~w~~~i~~~ 335 (1100)
.+.|.|.+ ..+++.+.+.|.....+|+.+|+.+
T Consensus 442 ~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 442 PNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred CceEEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 45666644 4668888999999999999999875
Done!