Query 001323
Match_columns 1100
No_of_seqs 51 out of 53
Neff 2.5
Searched_HMMs 46136
Date Thu Mar 28 21:48:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10358 NT-C2: N-terminal C2 99.6 2.6E-14 5.6E-19 133.0 11.9 129 13-161 3-135 (143)
2 PF01843 DIL: DIL domain; Int 98.4 1.8E-07 3.9E-12 85.6 3.3 104 827-972 1-104 (105)
3 cd08373 C2A_Ferlin C2 domain f 84.0 2.1 4.6E-05 40.0 5.3 83 70-164 38-121 (127)
4 cd04022 C2A_MCTP_PRT_plant C2 83.8 1.3 2.7E-05 41.5 3.8 78 71-159 45-124 (127)
5 cd00275 C2_PLC_like C2 domain 82.9 2.4 5.3E-05 38.8 5.2 72 70-159 55-126 (128)
6 cd08682 C2_Rab11-FIP_classI C2 81.8 2.5 5.4E-05 39.5 4.9 82 70-159 43-126 (126)
7 cd08690 C2_Freud-1 C2 domain f 81.5 1.2 2.6E-05 45.1 2.9 93 49-159 39-135 (155)
8 cd08385 C2A_Synaptotagmin-1-5- 80.3 7.2 0.00016 36.1 7.4 71 41-129 41-112 (124)
9 cd08393 C2A_SLP-1_2 C2 domain 80.1 1.1 2.3E-05 42.4 1.9 49 71-130 66-115 (125)
10 cd04011 C2B_Ferlin C2 domain s 78.5 1.8 3.9E-05 39.6 2.8 48 71-127 45-93 (111)
11 cd08388 C2A_Synaptotagmin-4-11 76.6 14 0.0003 35.4 8.2 104 19-140 18-126 (128)
12 cd08386 C2A_Synaptotagmin-7 C2 76.0 9.9 0.00021 35.2 6.9 93 20-129 19-113 (125)
13 cd08392 C2A_SLP-3 C2 domain fi 75.8 2 4.3E-05 41.4 2.4 50 71-131 66-116 (128)
14 cd08680 C2_Kibra C2 domain fou 75.7 1.7 3.8E-05 41.9 2.0 51 71-132 65-116 (124)
15 cd08391 C2A_C2C_Synaptotagmin_ 74.4 4.5 9.9E-05 36.7 4.2 69 71-159 52-120 (121)
16 cd04015 C2_plant_PLD C2 domain 72.6 6.6 0.00014 39.1 5.2 72 71-159 83-156 (158)
17 cd08390 C2A_Synaptotagmin-15-1 68.1 23 0.00049 32.7 7.3 48 71-129 63-111 (123)
18 smart00239 C2 Protein kinase C 68.0 17 0.00036 30.3 5.9 45 70-127 47-92 (101)
19 cd08678 C2_C21orf25-like C2 do 66.8 9.5 0.00021 35.8 4.7 78 70-162 43-121 (126)
20 cd08375 C2_Intersectin C2 doma 66.7 7.9 0.00017 37.6 4.2 55 71-140 60-115 (136)
21 cd04031 C2A_RIM1alpha C2 domai 66.6 30 0.00065 31.9 7.8 91 19-126 18-112 (125)
22 cd00276 C2B_Synaptotagmin C2 d 65.6 5.8 0.00012 36.7 2.9 46 70-126 63-109 (134)
23 cd04043 C2_Munc13_fungal C2 do 64.6 43 0.00094 31.1 8.4 44 71-127 49-93 (126)
24 cd08685 C2_RGS-like C2 domain 63.0 4.3 9.3E-05 38.5 1.7 46 71-128 61-108 (119)
25 cd04029 C2A_SLP-4_5 C2 domain 62.8 4.7 0.0001 38.4 1.9 49 71-130 66-115 (125)
26 cd08389 C2A_Synaptotagmin-14_1 61.0 8.2 0.00018 36.6 3.1 50 70-129 62-112 (124)
27 cd08381 C2B_PI3K_class_II C2 d 59.9 7.4 0.00016 36.9 2.6 48 71-128 62-110 (122)
28 cd08681 C2_fungal_Inn1p-like C 59.8 12 0.00025 34.4 3.8 45 70-127 46-90 (118)
29 cd08387 C2A_Synaptotagmin-8 C2 59.2 30 0.00065 32.2 6.4 69 43-129 43-112 (124)
30 cd08377 C2C_MCTP_PRT C2 domain 58.1 15 0.00034 33.4 4.3 71 71-159 46-117 (119)
31 cd08378 C2B_MCTP_PRT_plant C2 57.7 15 0.00032 34.9 4.2 44 71-127 41-84 (121)
32 cd04030 C2C_KIAA1228 C2 domain 57.6 10 0.00022 35.1 3.0 47 70-127 65-114 (127)
33 cd04024 C2A_Synaptotagmin-like 57.2 20 0.00044 33.0 4.9 75 71-158 48-126 (128)
34 cd08405 C2B_Synaptotagmin-7 C2 55.5 7 0.00015 37.0 1.7 48 71-129 65-113 (136)
35 cd08521 C2A_SLP C2 domain firs 55.2 59 0.0013 29.8 7.6 47 71-128 65-112 (123)
36 cd04044 C2A_Tricalbin-like C2 53.3 9.8 0.00021 34.7 2.2 45 70-128 49-94 (124)
37 cd04036 C2_cPLA2 C2 domain pre 53.2 54 0.0012 30.4 7.0 80 41-141 25-104 (119)
38 cd08376 C2B_MCTP_PRT C2 domain 53.0 11 0.00024 34.4 2.5 56 71-140 45-101 (116)
39 cd00030 C2 C2 domain. The C2 d 51.0 38 0.00082 27.7 5.1 46 70-128 44-90 (102)
40 cd08691 C2_NEDL1-like C2 domai 49.9 18 0.0004 35.7 3.6 72 71-158 58-136 (137)
41 PF00168 C2: C2 domain; Inter 49.6 33 0.00071 28.4 4.6 81 20-120 2-84 (85)
42 cd08402 C2B_Synaptotagmin-1 C2 49.0 14 0.00031 35.0 2.6 47 72-129 66-113 (136)
43 cd08384 C2B_Rabphilin_Doc2 C2 46.6 13 0.00028 35.0 1.9 47 71-128 63-110 (133)
44 cd04050 C2B_Synaptotagmin-like 46.5 14 0.00031 33.6 2.2 43 70-127 44-86 (105)
45 cd04039 C2_PSD C2 domain prese 46.1 15 0.00032 34.4 2.3 45 71-127 50-95 (108)
46 cd04037 C2E_Ferlin C2 domain f 45.6 16 0.00034 34.6 2.3 48 69-129 45-93 (124)
47 cd04028 C2B_RIM1alpha C2 domai 45.1 19 0.00041 36.2 2.9 43 72-128 81-125 (146)
48 cd04042 C2A_MCTP_PRT C2 domain 44.5 38 0.00081 31.5 4.6 73 70-159 45-118 (121)
49 cd04019 C2C_MCTP_PRT_plant C2 44.4 34 0.00073 34.1 4.5 46 70-128 45-91 (150)
50 cd08688 C2_KIAA0528-like C2 do 43.7 17 0.00037 33.5 2.2 46 71-127 45-92 (110)
51 cd04027 C2B_Munc13 C2 domain s 42.2 29 0.00063 32.9 3.5 69 71-157 46-126 (127)
52 PF07334 IFP_35_N: Interferon- 41.7 37 0.00079 32.0 4.0 25 563-587 4-28 (76)
53 cd08675 C2B_RasGAP C2 domain s 41.7 22 0.00049 34.5 2.8 57 71-127 47-106 (137)
54 cd04052 C2B_Tricalbin-like C2 40.5 39 0.00084 31.3 4.0 43 72-127 39-81 (111)
55 cd08395 C2C_Munc13 C2 domain t 39.9 25 0.00053 34.2 2.7 48 71-128 51-99 (120)
56 cd04018 C2C_Ferlin C2 domain t 39.2 20 0.00042 36.2 2.0 46 71-128 59-105 (151)
57 cd04014 C2_PKC_epsilon C2 doma 39.0 47 0.001 31.4 4.4 67 71-160 60-128 (132)
58 cd04026 C2_PKC_alpha_gamma C2 38.0 96 0.0021 29.2 6.3 68 41-127 38-108 (131)
59 cd04046 C2_Calpain C2 domain p 37.8 80 0.0017 29.9 5.7 72 71-159 48-120 (126)
60 cd08409 C2B_Synaptotagmin-15 C 37.1 22 0.00047 34.4 1.9 46 71-127 64-110 (137)
61 cd04041 C2A_fungal C2 domain f 36.8 24 0.00052 32.6 2.1 47 71-127 50-97 (111)
62 cd04048 C2A_Copine C2 domain f 36.4 41 0.00089 31.3 3.5 60 71-144 52-116 (120)
63 PF02007 MtrH: Tetrahydrometha 35.5 22 0.00048 40.2 1.9 44 856-900 183-239 (296)
64 cd04033 C2_NEDD4_NEDD4L C2 dom 35.0 61 0.0013 30.3 4.5 44 71-128 52-96 (133)
65 cd04049 C2_putative_Elicitor-r 34.9 31 0.00066 32.1 2.5 48 70-127 46-94 (124)
66 cd08379 C2D_MCTP_PRT_plant C2 34.3 31 0.00068 33.7 2.5 43 71-127 48-97 (126)
67 cd08410 C2B_Synaptotagmin-17 C 32.6 32 0.00069 33.1 2.2 48 71-129 64-112 (135)
68 cd04009 C2B_Munc13-like C2 dom 32.4 34 0.00073 32.7 2.3 54 71-133 68-122 (133)
69 cd04021 C2_E3_ubiquitin_ligase 32.1 26 0.00057 33.2 1.6 43 70-127 46-89 (125)
70 cd04020 C2B_SLP_1-2-3-4 C2 dom 31.1 37 0.0008 34.2 2.5 48 71-128 77-125 (162)
71 cd04010 C2B_RasA3 C2 domain se 28.9 71 0.0015 32.1 4.0 53 71-128 48-108 (148)
72 cd08408 C2B_Synaptotagmin-14_1 28.6 43 0.00093 32.8 2.4 49 69-128 64-113 (138)
73 cd04051 C2_SRC2_like C2 domain 28.3 1.1E+02 0.0024 28.5 4.9 51 69-128 45-96 (125)
74 PRK14127 cell division protein 28.0 1.3E+02 0.0028 29.9 5.5 55 563-622 41-103 (109)
75 cd04035 C2A_Rabphilin_Doc2 C2 27.2 32 0.00068 32.0 1.2 49 70-128 64-112 (123)
76 PLN03008 Phospholipase D delta 26.8 83 0.0018 40.2 4.9 76 72-164 103-182 (868)
77 cd08403 C2B_Synaptotagmin-3-5- 26.0 51 0.0011 31.3 2.4 44 71-125 64-108 (134)
78 cd04040 C2D_Tricalbin-like C2 25.9 2.2E+02 0.0049 25.9 6.4 57 70-140 44-101 (115)
79 cd04038 C2_ArfGAP C2 domain pr 24.4 62 0.0013 32.3 2.7 70 71-164 46-116 (145)
80 PF13943 WPP: WPP domain 24.3 29 0.00064 33.9 0.4 41 585-625 45-91 (99)
81 cd04016 C2_Tollip C2 domain pr 24.1 1.5E+02 0.0032 28.9 5.1 57 71-141 47-104 (121)
82 cd08400 C2_Ras_p21A1 C2 domain 22.5 1.6E+02 0.0034 28.2 4.8 45 71-128 46-91 (126)
83 cd08404 C2B_Synaptotagmin-4 C2 21.9 42 0.0009 32.0 0.9 45 71-126 65-110 (136)
84 PF01166 TSC22: TSC-22/dip/bun 21.6 1.1E+02 0.0025 27.8 3.5 27 555-581 10-36 (59)
85 cd08686 C2_ABR C2 domain in th 20.9 74 0.0016 31.6 2.4 52 51-124 31-90 (118)
86 PF14389 Lzipper-MIP1: Leucine 20.7 2.2E+02 0.0048 26.9 5.3 51 563-613 5-59 (88)
87 cd04045 C2C_Tricalbin-like C2 20.6 67 0.0015 30.5 2.0 44 70-127 46-90 (120)
88 COG1865 cbiZ Adenosylcobinamid 20.6 39 0.00084 36.5 0.5 33 957-989 27-59 (200)
89 PF08181 DegQ: DegQ (SacQ) fam 20.5 1.4E+02 0.003 25.9 3.5 23 565-587 3-25 (46)
90 cd08677 C2A_Synaptotagmin-13 C 20.0 74 0.0016 31.5 2.2 46 71-127 60-106 (118)
No 1
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=99.56 E-value=2.6e-14 Score=133.02 Aligned_cols=129 Identities=25% Similarity=0.530 Sum_probs=104.6
Q ss_pred ceeEEEEEEEeeeecCCCCcccccccceeEEEeecCCCC--CCCcccccCCCcccccCceEEeecceeeeEEEEeecccC
Q 001323 13 ASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRN--SGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVK 90 (1100)
Q Consensus 13 ~sv~vdy~IhiqeIkPWPpSqSlrS~rSVllqWENGd~~--SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~k 90 (1100)
..++++|.|+|++|..||+.... |.+.|.+|++. +|. +-...+.+|.+.|||.|.+++||+++.+.
T Consensus 3 ~~~kf~~~l~i~~l~~~p~~~~~-----v~v~wkr~~~~~~~~~------t~~~~~~~~~v~w~e~~~~~~tl~~~~k~- 70 (143)
T PF10358_consen 3 KAVKFQFDLTIHELENLPSSNGK-----VFVKWKRGDKSKGSGT------TSRANVKNGKVQWNEEFSFPCTLYRDKKS- 70 (143)
T ss_pred ceeeEEEEEEEEEeECcCCCCCE-----EEEEEEECCCCcccee------eeeeeccccEEEEeeEEEEEEEEEEcCCC-
Confidence 46899999999999999995444 99999999999 454 44466789999999999999999999222
Q ss_pred CCCcchhcccceeeeecccccccc-cccceeeeccccccccc-cceeeccccccccccccCCCceEEEEeeec
Q 001323 91 NKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGIVK-ETLSVNAPMNSKRSFRNTAQPVLFIKIQPA 161 (1100)
Q Consensus 91 g~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~gii~-e~~si~~p~n~krs~rn~~qp~lyv~IqP~ 161 (1100)
..|++..|+|.||.....+. +.||++.||||+|.-.. +..++..||.-+ ....+.|.|+|+-.
T Consensus 71 ----~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 71 ----KEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred ----CcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 36999999999999854332 79999999999999995 788888888655 34456666666643
No 2
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=98.40 E-value=1.8e-07 Score=85.56 Aligned_cols=104 Identities=21% Similarity=0.512 Sum_probs=83.4
Q ss_pred HHHHHHHHHhHHHHHHHHhcccCCCCCCCCCCCCCCCCcccccCCCCccccchhhhhhhhhhhHHHHhhhcCCCCCCCcc
Q 001323 827 LIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLD 906 (1100)
Q Consensus 827 lVmeqcVaRLDVAMFNAILRES~~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAQLKnaIgnWSRwLtDlFGid~~d~~~ 906 (1100)
+++.|+.--+++-.||.||-.. .-.++-.|+|+|.-|+.-..|+... |+...
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~-----------------------~~~~~~~g~qi~~nls~l~~W~~~~-~l~~~---- 52 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRR-----------------------KYCSWSKGVQIRYNLSELEDWARSH-GLEEA---- 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHS-----------------------S-B-HHHHHHHHHHHHHHHHCCCCT-TSTTH----
T ss_pred CHHHHHHHHHHHHHHHHHHCCC-----------------------CccccccHHHHHHHHHHHHHHHHhc-ccchh----
Confidence 4678999999999999999521 2279999999999999999999876 44421
Q ss_pred cCCCCCccccccCCccchhhhhHhhhcccccchhhccccccccccCCCCChhhHHHhhcccCCCCC
Q 001323 907 NENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVCPTFGAPLIKRVLDNFCPDEF 972 (1100)
Q Consensus 907 ~~~~~~~~~~~~~~~fk~F~LLnalSDLLMLPKDML~d~SiRkEVCP~~~lpLIkRIL~nF~PDEF 972 (1100)
....|.-|+.+++||+++|..+.|-..++++||+++..-|.+||.+|.||++
T Consensus 53 --------------~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~~c~~Ln~~Qi~~iL~~Y~~~~~ 104 (105)
T PF01843_consen 53 --------------AEEHLQPLSQAANLLQLRKSTLQDWDSLRETCPSLNPAQIRKILSNYQPDDY 104 (105)
T ss_dssp ---------------HHHCHHHHHHHHHCCC--SSHHHHHHHCCCTTTS-HHHHHHHHCCB---TT
T ss_pred --------------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHcccCCHHHHHHHHHhCCCcCC
Confidence 2358899999999999999999999999999999999999999999999986
No 3
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=83.96 E-value=2.1 Score=39.95 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=55.6
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccccccceeecccccccccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRN 148 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn 148 (1100)
.-+|||.|.+++.-.- -....|+|.+|+-++- |-.+||.+.|+|.+.-- .....+..|+.-++...-
T Consensus 38 nP~Wne~f~f~~~~~~-----------~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~~~~ 105 (127)
T cd08373 38 NPVWNETFEWPLAGSP-----------DPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVS-EGLLEVTEPLLDSNGRPT 105 (127)
T ss_pred CCcccceEEEEeCCCc-----------CCCCEEEEEEEECCCCCCCceEEEEEEEhhHccc-CCceEEEEeCcCCCCCcc
Confidence 4589999999874210 1346799999987653 33899999999987642 344555667754433222
Q ss_pred CCCceEEEEeeeccCc
Q 001323 149 TAQPVLFIKIQPAEKS 164 (1100)
Q Consensus 149 ~~qp~lyv~IqP~~~~ 164 (1100)
..+-.|.+.+.|++.+
T Consensus 106 ~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 106 GATISLEVSYQPPDGA 121 (127)
T ss_pred cEEEEEEEEEeCCCCc
Confidence 2356677777898876
No 4
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=83.80 E-value=1.3 Score=41.51 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=53.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc--cccccceeeeccccccccccceeecccccccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD--KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRN 148 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd--K~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn 148 (1100)
-.|||.|.+++.-.. .-+...|+|.+|+..+- +..+||.+.|.|+++-.-.+....-+||. +++.+.
T Consensus 45 P~Wne~f~f~~~~~~----------~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~-~~~~~~ 113 (127)
T cd04022 45 PVWNEKLVFNVSDPS----------RLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE-KRGLFS 113 (127)
T ss_pred CccceEEEEEccCHH----------HccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEee-eCCCCC
Confidence 469999988763111 11245799999986553 45899999999999875456666777774 565544
Q ss_pred CCCceEEEEee
Q 001323 149 TAQPVLFIKIQ 159 (1100)
Q Consensus 149 ~~qp~lyv~Iq 159 (1100)
.++-.|-|+|+
T Consensus 114 ~~~G~l~l~~~ 124 (127)
T cd04022 114 RVRGEIGLKVY 124 (127)
T ss_pred CccEEEEEEEE
Confidence 45566666664
No 5
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=82.90 E-value=2.4 Score=38.82 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=50.6
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccccccccceeeccccccccccccC
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNT 149 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn~ 149 (1100)
.-+|||+|.+++.. . ....|.|.+|+.++.+..+||.+.+.|.+.. . -.-.+||..++.. -.
T Consensus 55 ~P~w~e~f~f~~~~-------~------~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~--~--g~~~~~l~~~~~~-~~ 116 (128)
T cd00275 55 NPVWNETFEFDVTV-------P------ELAFLRFVVYDEDSGDDDFLGQACLPLDSLR--Q--GYRHVPLLDSKGE-PL 116 (128)
T ss_pred CCccCCcEEEEEeC-------C------CeEEEEEEEEeCCCCCCcEeEEEEEEhHHhc--C--ceEEEEecCCCCC-CC
Confidence 56899999998871 1 1246899999987755589999999999862 2 2234566655443 34
Q ss_pred CCceEEEEee
Q 001323 150 AQPVLFIKIQ 159 (1100)
Q Consensus 150 ~qp~lyv~Iq 159 (1100)
....|+|+|+
T Consensus 117 ~~~~l~v~~~ 126 (128)
T cd00275 117 ELSTLFVHID 126 (128)
T ss_pred cceeEEEEEE
Confidence 4578888876
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=81.79 E-value=2.5 Score=39.55 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=54.4
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccccc-cccceeeccccccccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGI-VKETLSVNAPMNSKRSFR 147 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gi-i~e~~si~~p~n~krs~r 147 (1100)
.-.|||.|.+.+.-. .. +.-....|.|.+|+..+ .|-.+||.+.|.|+++-- -......-+||..++.-+
T Consensus 43 nP~Wne~f~F~v~~~---~~-----~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~ 114 (126)
T cd08682 43 SPVWKEECSFELPGL---LS-----GNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKD 114 (126)
T ss_pred CCEeCceEEEEecCc---cc-----CCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCC
Confidence 358999988766421 00 01123469999998754 334899999999998632 123456677887776644
Q ss_pred cCCCceEEEEee
Q 001323 148 NTAQPVLFIKIQ 159 (1100)
Q Consensus 148 n~~qp~lyv~Iq 159 (1100)
......|.|+||
T Consensus 115 ~~~~Gei~l~~~ 126 (126)
T cd08682 115 DKERGEIEVDIQ 126 (126)
T ss_pred ccccceEEEEeC
Confidence 455788888887
No 7
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=81.47 E-value=1.2 Score=45.06 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=54.6
Q ss_pred CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc--ccccccceeeecccc
Q 001323 49 DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR--DKTQLLATATIDLAD 126 (1100)
Q Consensus 49 d~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr--dK~QlLGtA~inLAd 126 (1100)
....+.|+++-=++ .=+|||+|.+.+.-....=. -.+++-.|.|.+|+-+. .|-.+||+|.|+|++
T Consensus 39 ~~~k~KT~v~k~Tl-------nPvfNE~f~f~I~~~~~~~~-----R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~ 106 (155)
T cd08690 39 EPQSGKTSTIKDTN-------SPEYNESFKLNINRKHRSFQ-----RVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEP 106 (155)
T ss_pred CCceeecCcccCCC-------CCcccceEEEEeccccchhh-----hhccCCcEEEEEEeCCCcccCCCeeEEEEEEccc
Confidence 34455665443222 23799999988732110000 12456789999998864 234799999999999
Q ss_pred c--cccccceeeccccccccccccCCCceEEEEee
Q 001323 127 Y--GIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (1100)
Q Consensus 127 ~--gii~e~~si~~p~n~krs~rn~~qp~lyv~Iq 159 (1100)
+ .+. +...+|| ++ -|-.+.-.|=|+|+
T Consensus 107 l~~~~~---~~~~~~L--~~-~~k~~Gg~l~v~ir 135 (155)
T cd08690 107 LETKCE---IHESVDL--MD-GRKATGGKLEVKVR 135 (155)
T ss_pred ccccCc---ceEEEEh--hh-CCCCcCCEEEEEEE
Confidence 8 332 1123333 33 33356666666664
No 8
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=80.34 E-value=7.2 Score=36.09 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=46.4
Q ss_pred eEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccce
Q 001323 41 VMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLAT 119 (1100)
Q Consensus 41 VllqWENGd~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGt 119 (1100)
|.+.-.++.+....|.++-.++ .-.|||.|.+++.. ...+...|.|.+|+..+- +-.+||.
T Consensus 41 v~v~l~~~~~~~~kT~v~~~t~-------nP~wne~f~f~i~~-----------~~l~~~~l~~~V~d~d~~~~~~~lG~ 102 (124)
T cd08385 41 VKVYLLPDKKKKFETKVHRKTL-------NPVFNETFTFKVPY-----------SELGNKTLVFSVYDFDRFSKHDLIGE 102 (124)
T ss_pred EEEEEEcCCCCceecccCcCCC-------CCceeeeEEEeCCH-----------HHhCCCEEEEEEEeCCCCCCCceeEE
Confidence 3344444444455666553332 35799999988742 123345799999987553 3389999
Q ss_pred eeeccccccc
Q 001323 120 ATIDLADYGI 129 (1100)
Q Consensus 120 A~inLAd~gi 129 (1100)
+.|+|++...
T Consensus 103 ~~i~l~~~~~ 112 (124)
T cd08385 103 VRVPLLTVDL 112 (124)
T ss_pred EEEecCcccC
Confidence 9999998744
No 9
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=80.10 E-value=1.1 Score=42.45 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=37.2
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIV 130 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii 130 (1100)
-.|||.|.+++.. +..+...|.|.||+-.+- |-.+||.+.|.|+++..-
T Consensus 66 P~~nE~f~f~v~~-----------~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 66 PVFNETLRYKVER-----------EELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred CccCceEEEECCH-----------HHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccC
Confidence 3599999997632 235667899999987542 338999999999998643
No 10
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=78.53 E-value=1.8 Score=39.59 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=36.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~ 127 (1100)
-.|||.|.+.++... ..+++-.|+|.+|+.++-+. .+||.+.|+|++.
T Consensus 45 P~wne~f~f~~~~~~---------~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v 93 (111)
T cd04011 45 PFYNEYFFFNFHESP---------DELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTV 93 (111)
T ss_pred CccccEEEEecCCCH---------HHHhcCeEEEEEEcCcccccCCccEEEEECCccc
Confidence 468999988876522 33556689999999866433 8999999999876
No 11
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=76.63 E-value=14 Score=35.40 Aligned_cols=104 Identities=13% Similarity=0.240 Sum_probs=59.9
Q ss_pred EEEEeeeecCCCCcccc-cccce-eEEEeecCCCCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCcc
Q 001323 19 YQIHIQDIKPWPPSQSL-RSLRS-VMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDAD 95 (1100)
Q Consensus 19 y~IhiqeIkPWPpSqSl-rS~rS-VllqWENGd~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~-vtl~~e~s~kg~~~~ 95 (1100)
..|||.+.+-=|+.... ...-. |.+.--.+.+..+.|+++--++ .-.|||.|.+. +. ..
T Consensus 18 L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~-------nP~wnE~F~f~~~~-----------~~ 79 (128)
T cd08388 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTR-------NPVYDETFTFYGIP-----------YN 79 (128)
T ss_pred EEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCC-------CCceeeEEEEcccC-----------HH
Confidence 34667666655553322 11111 2232223344456676654433 24799999882 21 11
Q ss_pred hhcccceeeeeccccc-ccccccceeeecccccccc-ccceeecccc
Q 001323 96 TFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIV-KETLSVNAPM 140 (1100)
Q Consensus 96 ~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gii-~e~~si~~p~ 140 (1100)
..+...|+|.+|+-.+ .+-.+||.+.|.|+|+.+. ++.+.+..||
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 2334579999997643 2338999999999999886 4445554443
No 12
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=75.99 E-value=9.9 Score=35.17 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=55.4
Q ss_pred EEEeeeecCCCCcccccccce-eEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhc
Q 001323 20 QIHIQDIKPWPPSQSLRSLRS-VMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (1100)
Q Consensus 20 ~IhiqeIkPWPpSqSlrS~rS-VllqWENGd~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~ 98 (1100)
.|+|.+-+-.|+-........ |.+..-.++...+.|.++--++ .=.|||.|.+++.- .+...
T Consensus 19 ~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~-------~P~Wne~f~f~~~~----------~~~l~ 81 (125)
T cd08386 19 TLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNL-------NPHWNETFLFEGFP----------YEKLQ 81 (125)
T ss_pred EEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCC-------CCccceeEEEcccC----------HHHhC
Confidence 456666665555433322221 4444433334456666554332 24699999887431 11234
Q ss_pred ccceeeeecccccc-cccccceeeeccccccc
Q 001323 99 KNCLEFNLYEPRRD-KTQLLATATIDLADYGI 129 (1100)
Q Consensus 99 KN~LEfnlye~rrd-K~QlLGtA~inLAd~gi 129 (1100)
...|+|.+|+..+- |-.+||.+.|.|+++..
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred CCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence 45899999987542 33899999999999764
No 13
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=75.77 E-value=2 Score=41.36 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=37.7
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVK 131 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii~ 131 (1100)
-.|||.|.+++.. +....-.|+|.+|+..+- +-.+||.+.|.|+++.+..
T Consensus 66 PvfNE~F~f~v~~-----------~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~ 116 (128)
T cd08392 66 PVFNETLKYVVEA-----------DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFED 116 (128)
T ss_pred CccceEEEEEcCH-----------HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCC
Confidence 4699999998642 123335799999987652 2389999999999998874
No 14
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=75.68 E-value=1.7 Score=41.86 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=38.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeecccccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGIVKE 132 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~gii~e 132 (1100)
-.|||.|..+|.. +.-....|.|.+|+-.+.+- ++||.+.|.|+|+=...+
T Consensus 65 PvfnE~F~f~v~~-----------~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~ 116 (124)
T cd08680 65 PVFNEVFRVPISS-----------TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE 116 (124)
T ss_pred CccccEEEEECCH-----------HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc
Confidence 5699999998652 33556789999998755433 899999999999844433
No 15
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=74.38 E-value=4.5 Score=36.72 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=45.5
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccccccccceeeccccccccccccCC
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTA 150 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn~~ 150 (1100)
-.|||.|.+++.-. ..-.|.|.+|+....+..+||.+.|+|++. +-.+....-+|+.. ..
T Consensus 52 P~W~e~f~~~v~~~-------------~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l-~~~~~~~~w~~L~~------~~ 111 (121)
T cd08391 52 PKWNEVYEAVVDEV-------------PGQELEIELFDEDPDKDDFLGRLSIDLGSV-EKKGFIDEWLPLED------VK 111 (121)
T ss_pred CcccceEEEEeCCC-------------CCCEEEEEEEecCCCCCCcEEEEEEEHHHh-cccCccceEEECcC------CC
Confidence 46999998877421 123799999987665558999999999885 22223334445432 25
Q ss_pred CceEEEEee
Q 001323 151 QPVLFIKIQ 159 (1100)
Q Consensus 151 qp~lyv~Iq 159 (1100)
+..|.|.+|
T Consensus 112 ~G~~~~~~~ 120 (121)
T cd08391 112 SGRLHLKLE 120 (121)
T ss_pred CceEEEEEe
Confidence 677777665
No 16
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=72.63 E-value=6.6 Score=39.12 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=44.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccccccccceeeccccccccccccC-
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNT- 149 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn~- 149 (1100)
-+|||.|.+++. +. ...|+|.+|+-..-+.++||++.|.|++.- -.+....-+|| ....+..
T Consensus 83 P~WnE~F~~~~~---~~-----------~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~-~g~~~~~w~~L--~~~~~~~~ 145 (158)
T cd04015 83 PVWNESFHIYCA---HY-----------ASHVEFTVKDNDVVGAQLIGRAYIPVEDLL-SGEPVEGWLPI--LDSNGKPP 145 (158)
T ss_pred CccceEEEEEcc---CC-----------CCEEEEEEEeCCCcCCcEEEEEEEEhHHcc-CCCCcceEEEC--cCCCCCCC
Confidence 589999998764 11 135899999865544599999999999852 12222233343 2222222
Q ss_pred -CCceEEEEee
Q 001323 150 -AQPVLFIKIQ 159 (1100)
Q Consensus 150 -~qp~lyv~Iq 159 (1100)
.-+.|.|++|
T Consensus 146 ~~~~~l~v~~~ 156 (158)
T cd04015 146 KPGAKIRVSLQ 156 (158)
T ss_pred CCCCEEEEEEE
Confidence 2467888776
No 17
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=68.11 E-value=23 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.418 Sum_probs=35.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeeccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGI 129 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~gi 129 (1100)
-.|||.|.+++... .-++..|+|.+|+..+-+. .+||.+.|.|++.-.
T Consensus 63 P~wne~f~f~i~~~-----------~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 63 PNFDETFVFQVSFK-----------ELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred CccceEEEEEcCHH-----------HhcccEEEEEEEECCcCCCCcEEEEEEEeccceec
Confidence 36999998886321 2245689999998765333 899999999998654
No 18
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=67.97 E-value=17 Score=30.32 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=35.5
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc-ccccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK-~QlLGtA~inLAd~ 127 (1100)
.-.|||.|.+++.... ...|.|.+|+-+..+ .++||.+.|.|+++
T Consensus 47 ~P~w~e~~~~~~~~~~-------------~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~ 92 (101)
T smart00239 47 NPVWNETFEFEVPPPE-------------LAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92 (101)
T ss_pred CCcccceEEEEecCcc-------------cCEEEEEEEecCCccCCceeEEEEEEHHHc
Confidence 5689999999875432 567899999887654 49999999998775
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=66.81 E-value=9.5 Score=35.82 Aligned_cols=78 Identities=12% Similarity=0.178 Sum_probs=51.3
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc-ccccceeeeccccccccccceeecccccccccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQLLATATIDLADYGIVKETLSVNAPMNSKRSFRN 148 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK-~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn 148 (1100)
.-+|||.|.+.+. . ..+-|.|.+|+..... -++||.+.|+|.+.---.. ....+|+.-+.....
T Consensus 43 nP~Wne~f~f~~~------~--------~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~ 107 (126)
T cd08678 43 NPFWDEHFLFELS------P--------NSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGD 107 (126)
T ss_pred CCccCceEEEEeC------C--------CCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCC
Confidence 4589999977652 1 1346999999876532 3899999999988543322 234566664433345
Q ss_pred CCCceEEEEeeecc
Q 001323 149 TAQPVLFIKIQPAE 162 (1100)
Q Consensus 149 ~~qp~lyv~IqP~~ 162 (1100)
..+-.|.|.++=++
T Consensus 108 ~~~G~l~l~~~~~~ 121 (126)
T cd08678 108 SVSGSITVEFLFME 121 (126)
T ss_pred CcceEEEEEEEEec
Confidence 56777777776544
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=66.66 E-value=7.9 Score=37.61 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=37.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccccccccceeecccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIVKETLSVNAPM 140 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gii~e~~si~~p~ 140 (1100)
-.|||.|.+.+.- -+...|.|.+|+... .|-.+||.+.|.|.++ +.+......|+
T Consensus 60 P~Wne~f~f~v~~-------------~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l--~~~~~~~~~~~ 115 (136)
T cd08375 60 PKWNSSMQFFVKD-------------LEQDVLCITVFDRDFFSPDDFLGRTEIRVADI--LKETKESKGPI 115 (136)
T ss_pred CccCceEEEEecC-------------ccCCEEEEEEEECCCCCCCCeeEEEEEEHHHh--ccccccCCCcE
Confidence 5799999988741 123589999998754 2338999999999884 54444433333
No 21
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=66.64 E-value=30 Score=31.85 Aligned_cols=91 Identities=24% Similarity=0.371 Sum_probs=53.8
Q ss_pred EEEEeeeecCCCCcccccccce-eEEEeecC--CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcc
Q 001323 19 YQIHIQDIKPWPPSQSLRSLRS-VMIQWQNG--DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDAD 95 (1100)
Q Consensus 19 y~IhiqeIkPWPpSqSlrS~rS-VllqWENG--d~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~ 95 (1100)
..|+|.+-+-.|+......... |.+.-.++ ......|.++--++ .=.|||.|.+++.-. +
T Consensus 18 L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~-------nP~wne~f~f~~~~~----------~ 80 (125)
T cd04031 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTL-------NPEWNQTFEYSNVRR----------E 80 (125)
T ss_pred EEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCC-------CCccccEEEEcccCH----------H
Confidence 3566777776666543322222 33333221 23344555544333 235899998875221 1
Q ss_pred hhcccceeeeecccccccc-cccceeeecccc
Q 001323 96 TFLKNCLEFNLYEPRRDKT-QLLATATIDLAD 126 (1100)
Q Consensus 96 ~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd 126 (1100)
......|.|.+|+.++-+. .+||.+.|.|++
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 2345679999999866433 899999999999
No 22
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=65.55 E-value=5.8 Score=36.68 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=35.9
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLAD 126 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd 126 (1100)
.-.|||.|.+++.. ..+....|.|.||+.++. +-++||.+.|.|++
T Consensus 63 ~P~wne~f~f~i~~-----------~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 63 NPVFNEAFSFDVPA-----------EQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCeeeeeEEEECCH-----------HHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 46899999987632 124567899999998763 33999999999998
No 23
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=64.61 E-value=43 Score=31.05 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=32.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~ 127 (1100)
-.|||.|.+++.-. ....|.|.+|+-..- +-.+||.+.|+|++.
T Consensus 49 P~Wne~f~f~i~~~-------------~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~ 93 (126)
T cd04043 49 PRWDEEFELEVPAG-------------EPLWISATVWDRSFVGKHDLCGRASLKLDPK 93 (126)
T ss_pred CcccceEEEEcCCC-------------CCCEEEEEEEECCCCCCCceEEEEEEecCHH
Confidence 46999999887431 134689999976542 448999999999875
No 24
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=63.05 E-value=4.3 Score=38.46 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc--ccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK--TQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK--~QlLGtA~inLAd~g 128 (1100)
-.|||.|.+++.. +..+ ..|.|.+|+..+.. .++||.+.|.|+++-
T Consensus 61 P~~nE~F~f~v~~-----------~~~~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 61 PLFHETFSFDVNE-----------RDYQ-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CccccEEEEEcCh-----------HHhC-CEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 3699999998642 1233 35889999865532 389999999999984
No 25
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=62.80 E-value=4.7 Score=38.36 Aligned_cols=49 Identities=14% Similarity=0.326 Sum_probs=36.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIV 130 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii 130 (1100)
-.|||.|.+++.. +......|.|.+|+-.+- |-++||.+.|.|+++-.-
T Consensus 66 P~wnE~f~f~i~~-----------~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 66 PVYNETLKYSISH-----------SQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred CcccceEEEECCH-----------HHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccccc
Confidence 4699999988642 123455799999987553 338999999999988543
No 26
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=60.95 E-value=8.2 Score=36.60 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=36.5
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc-ccccceeeeccccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQLLATATIDLADYGI 129 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK-~QlLGtA~inLAd~gi 129 (1100)
.-.|||.|.+++. ..+....-.|.|.||+-.+-. -.+||.+.|.|+++..
T Consensus 62 nP~fnE~F~f~~i----------~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~ 112 (124)
T cd08389 62 NPVFNETFTFSRV----------EPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL 112 (124)
T ss_pred CCcccCEEEECCC----------CHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCC
Confidence 3579999999821 123445557999999875422 2899999999999844
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=59.88 E-value=7.4 Score=36.87 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=35.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
=.|||.|.+++.- .+.-+...|+|.+|+-.+- +-++||.+.|+|+++-
T Consensus 62 P~wnE~F~f~~~~----------~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 62 PTFNEMLVYDGLP----------VEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred CCcccEEEEecCC----------hHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence 3699999988621 1234556899999986442 2389999999999875
No 28
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=59.80 E-value=12 Score=34.39 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=34.2
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~ 127 (1100)
.=.|||.|.+++... ....|.|.+|+-++-+-.+||.+.|+|+++
T Consensus 46 nP~Wne~f~f~v~~~-------------~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~ 90 (118)
T cd08681 46 HPEWDEELRFEITED-------------KKPILKVAVFDDDKRKPDLIGDTEVDLSPA 90 (118)
T ss_pred CCccCceEEEEecCC-------------CCCEEEEEEEeCCCCCCcceEEEEEecHHH
Confidence 467999999887531 234689999986543348999999999986
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=59.23 E-value=30 Score=32.18 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=44.5
Q ss_pred EEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceee
Q 001323 43 IQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATAT 121 (1100)
Q Consensus 43 lqWENGd~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~ 121 (1100)
+.--.+....+.|.++--+ -.-.|||.|.+++... ......|.|.+|+..+- |-.+||.+.
T Consensus 43 v~l~~~~~~~~kT~v~~~t-------~~P~wne~f~f~v~~~-----------~l~~~~l~i~V~d~~~~~~~~~iG~~~ 104 (124)
T cd08387 43 VRLLPDRSNTKQSKIHKKT-------LNPEFDESFVFEVPPQ-----------ELPKRTLEVLLYDFDQFSRDECIGVVE 104 (124)
T ss_pred EEEecCCCCcEeCceEcCC-------CCCCcccEEEEeCCHH-----------HhCCCEEEEEEEECCCCCCCceeEEEE
Confidence 3333344455666655332 2346999998876431 11234799999987542 338999999
Q ss_pred eccccccc
Q 001323 122 IDLADYGI 129 (1100)
Q Consensus 122 inLAd~gi 129 (1100)
|.|+|+-.
T Consensus 105 i~l~~~~~ 112 (124)
T cd08387 105 LPLAEVDL 112 (124)
T ss_pred EecccccC
Confidence 99999863
No 30
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=58.06 E-value=15 Score=33.43 Aligned_cols=71 Identities=18% Similarity=0.404 Sum_probs=45.8
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccccccccceeeccccccccccccC
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNT 149 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn~ 149 (1100)
-.|||.|.+++. +. .-.|.|.+|+.+. .|-.+||.+.+.|++.- .....-.++. ++..+..
T Consensus 46 P~W~e~f~~~~~---~~-----------~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~---~~~~~~~~l~-~~~~~~~ 107 (119)
T cd08377 46 PEWNKIFTFPIK---DI-----------HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK---NGERKWYALK-DKKLRTR 107 (119)
T ss_pred CccCcEEEEEec---Cc-----------CCEEEEEEEECCCCCCCceeeEEEEEHHHCC---CCCceEEECc-ccCCCCc
Confidence 468999988863 11 1369999998765 44589999999999852 1222233443 2334444
Q ss_pred CCceEEEEee
Q 001323 150 AQPVLFIKIQ 159 (1100)
Q Consensus 150 ~qp~lyv~Iq 159 (1100)
.+=.|+|++|
T Consensus 108 ~~G~i~l~~~ 117 (119)
T cd08377 108 AKGSILLEMD 117 (119)
T ss_pred eeeEEEEEEE
Confidence 6677777765
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=57.72 E-value=15 Score=34.88 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=34.7
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~ 127 (1100)
-.|||.|.+++.- -+...|+|.+|+..+-+-.+||.+.|+|++.
T Consensus 41 P~Wne~F~f~~~~-------------~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l 84 (121)
T cd08378 41 PEWNQVFAFSKDR-------------LQGSTLEVSVWDKDKAKDDFLGGVCFDLSEV 84 (121)
T ss_pred CccceEEEEEcCC-------------CcCCEEEEEEEeCCCCcCceeeeEEEEhHhC
Confidence 5799999987421 1567899999987554459999999999986
No 32
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=57.62 E-value=10 Score=35.13 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=35.8
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc---cccccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD---KTQLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd---K~QlLGtA~inLAd~ 127 (1100)
.-.|||.|.+++.. +..+...|+|.+|+-... +-.+||.+.|.|++.
T Consensus 65 nP~wne~f~f~i~~-----------~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l 114 (127)
T cd04030 65 NPVFDETFEFPVSL-----------EELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114 (127)
T ss_pred CCEECeEEEEecCH-----------HHhcCCEEEEEEEECCcccCCCCceEEEEEEecccc
Confidence 45799999988632 123456899999987653 348999999999995
No 33
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=57.18 E-value=20 Score=32.96 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=46.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccc--cccceeecccccccc-cc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGI--VKETLSVNAPMNSKR-SF 146 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gi--i~e~~si~~p~n~kr-s~ 146 (1100)
-.|||.|.+++.- -+.-.|+|.+|+...- +..+||.+.|.|++.=- -.+....-.++..++ ..
T Consensus 48 P~Wne~f~~~~~~-------------~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~ 114 (128)
T cd04024 48 PKWNYWCEFPIFS-------------AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGK 114 (128)
T ss_pred CccCCcEEEEecC-------------CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCc
Confidence 3589999988752 1234799999987653 34899999999998521 112233444555443 23
Q ss_pred ccCCCceEEEEe
Q 001323 147 RNTAQPVLFIKI 158 (1100)
Q Consensus 147 rn~~qp~lyv~I 158 (1100)
+..++=.|.|++
T Consensus 115 ~~~~~G~i~l~~ 126 (128)
T cd04024 115 TSVVSGEIHLQF 126 (128)
T ss_pred cccccceEEEEE
Confidence 334455666554
No 34
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=55.47 E-value=7 Score=37.04 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=35.8
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGI 129 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gi 129 (1100)
=.|||.|.+++... .+....|.|.||+..+- |-.+||.+.|.+++.|.
T Consensus 65 P~wne~F~f~i~~~-----------~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~ 113 (136)
T cd08405 65 PVFNESFIFNIPLE-----------RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL 113 (136)
T ss_pred CcccceEEEeCCHH-----------HhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc
Confidence 47999998875431 23345799999987653 33899999999998764
No 35
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=55.18 E-value=59 Score=29.85 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=34.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
-.|||.|.+++.. +......|.|.+|+..+- |-.+||.+.|.|+++-
T Consensus 65 P~wne~f~f~i~~-----------~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 65 PVFNETLKYHISK-----------SQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred CcccceEEEeCCH-----------HHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence 4699999887532 112345799999986542 3389999999999984
No 36
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=53.32 E-value=9.8 Score=34.73 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=33.4
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
.=+|||.|.+.+. +. ...|.|.+|+...- +-.+||.+.|.|++.-
T Consensus 49 ~P~Wne~~~~~v~---~~-----------~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~ 94 (124)
T cd04044 49 NPVWNETKYILVN---SL-----------TEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL 94 (124)
T ss_pred CCcceEEEEEEeC---CC-----------CCEEEEEEEecCCCCCCceeEEEEEEHHHhc
Confidence 4689999998765 11 13588999987654 3389999999999853
No 37
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=53.21 E-value=54 Score=30.40 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=48.0
Q ss_pred eEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccccccccee
Q 001323 41 VMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATA 120 (1100)
Q Consensus 41 VllqWENGd~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA 120 (1100)
|.+.--++......|.++--+ ..=.|||.|.+++... ....|.|.+|+..+-+-.+||++
T Consensus 25 v~v~~~~~~~~~~kT~vv~~t-------~nP~Wne~f~f~i~~~-------------~~~~l~v~v~d~d~~~~~~iG~~ 84 (119)
T cd04036 25 VELWLPTASDEKKRTKTIKNS-------INPVWNETFEFRIQSQ-------------VKNVLELTVMDEDYVMDDHLGTV 84 (119)
T ss_pred EEEEEcCCCCccCccceecCC-------CCCccceEEEEEeCcc-------------cCCEEEEEEEECCCCCCcccEEE
Confidence 444443333344555554322 3457999999876421 12359999998655433899999
Q ss_pred eeccccccccccceeeccccc
Q 001323 121 TIDLADYGIVKETLSVNAPMN 141 (1100)
Q Consensus 121 ~inLAd~gii~e~~si~~p~n 141 (1100)
.|+|+++-- -......+|+.
T Consensus 85 ~~~l~~l~~-g~~~~~~~~L~ 104 (119)
T cd04036 85 LFDVSKLKL-GEKVRVTFSLN 104 (119)
T ss_pred EEEHHHCCC-CCcEEEEEECC
Confidence 999998531 23444555554
No 38
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=53.03 E-value=11 Score=34.37 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=38.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccccccceeecccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPM 140 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii~e~~si~~p~ 140 (1100)
=.|||.|.+++.- -+...|+|.+|+.++- +-.+||.+.|+|+++.- .+...+-.|+
T Consensus 45 P~Wne~f~f~~~~-------------~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L 101 (116)
T cd08376 45 PQWLEQFDLHLFD-------------DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPR-EQTHSLELEL 101 (116)
T ss_pred CceeEEEEEEecC-------------CCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCC-CCceEEEEEc
Confidence 4599999887651 1245799999987653 44999999999998753 3334444444
No 39
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=50.99 E-value=38 Score=27.68 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=36.0
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc-ccccceeeecccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQLLATATIDLADYG 128 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK-~QlLGtA~inLAd~g 128 (1100)
.-.|||.|.+++... ....|.|.+|+..... ..++|.+.+.|.+..
T Consensus 44 ~P~w~~~~~~~~~~~-------------~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 44 NPVWNETFEFPVLDP-------------ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCcccceEEEEccCC-------------CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 356899999887764 4567899999776543 389999999999876
No 40
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=49.88 E-value=18 Score=35.70 Aligned_cols=72 Identities=11% Similarity=0.161 Sum_probs=46.1
Q ss_pred EEe-ecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-cc---ccccceeeeccccc--cccccceeeccccccc
Q 001323 71 IEF-NESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DK---TQLLATATIDLADY--GIVKETLSVNAPMNSK 143 (1100)
Q Consensus 71 ieF-nEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK---~QlLGtA~inLAd~--gii~e~~si~~p~n~k 143 (1100)
=.| ||.|.+.+.. . ..|+|.+|+-.. ++ -.+||.+.|+|+++ |-..+......|+- |
T Consensus 58 P~W~nE~f~f~v~~-------~--------~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k 121 (137)
T cd08691 58 PVWHREQFVFVGLP-------T--------DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-R 121 (137)
T ss_pred CceEceEEEEEcCC-------C--------CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC-c
Confidence 469 9999998731 0 259999998422 22 17999999999998 22222344556665 7
Q ss_pred cccccCCCceEEEEe
Q 001323 144 RSFRNTAQPVLFIKI 158 (1100)
Q Consensus 144 rs~rn~~qp~lyv~I 158 (1100)
|+..+.++=.|=++|
T Consensus 122 ~~~~s~v~G~~~l~~ 136 (137)
T cd08691 122 RTPTDHVSGQLTFRF 136 (137)
T ss_pred CCCCCcEEEEEEEEe
Confidence 777666665444443
No 41
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=49.64 E-value=33 Score=28.42 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=46.0
Q ss_pred EEEeeeecCCCCcccccccceeEEEeecC-CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhc
Q 001323 20 QIHIQDIKPWPPSQSLRSLRSVMIQWQNG-DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (1100)
Q Consensus 20 ~IhiqeIkPWPpSqSlrS~rSVllqWENG-d~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~ 98 (1100)
.|||.+.+-.|...........+.-.=+| ......|.++-- .+-..|||.|.+++.....
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-------~~~P~w~e~~~~~~~~~~~------------ 62 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-------TSNPVWNEEFEFPLDDPDL------------ 62 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-------BSSEEEEEEEEEEESHGCG------------
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-------cccceeeeeeeeeeecccc------------
Confidence 47888888777633332222222222223 221244443321 2557999999999543211
Q ss_pred ccceeeeeccccccc-cccccee
Q 001323 99 KNCLEFNLYEPRRDK-TQLLATA 120 (1100)
Q Consensus 99 KN~LEfnlye~rrdK-~QlLGtA 120 (1100)
.. |.|.||+-+... -++||.|
T Consensus 63 ~~-l~~~V~~~~~~~~~~~iG~~ 84 (85)
T PF00168_consen 63 DS-LSFEVWDKDSFGKDELIGEV 84 (85)
T ss_dssp TE-EEEEEEEETSSSSEEEEEEE
T ss_pred cc-eEEEEEECCCCCCCCEEEEE
Confidence 11 999999877654 3899987
No 42
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=48.96 E-value=14 Score=35.03 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=34.4
Q ss_pred EeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeeccccccc
Q 001323 72 EFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGI 129 (1100)
Q Consensus 72 eFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~gi 129 (1100)
.|||.|.+++.. +..+.-.|.|.||+.++-.. ++||.+.|.|...|.
T Consensus 66 ~wne~f~f~i~~-----------~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~ 113 (136)
T cd08402 66 YYNESFSFEVPF-----------EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA 113 (136)
T ss_pred cccceEEEECCH-----------HHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh
Confidence 699999987632 12233479999998866333 899999999987653
No 43
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=46.62 E-value=13 Score=34.99 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=34.4
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
-.|||.|.+++... ....-.|.|.||+..+. +-.+||.+.|+|+..|
T Consensus 63 P~wne~f~f~~~~~-----------~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~ 110 (133)
T cd08384 63 PEFNEEFFYDIKHS-----------DLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKG 110 (133)
T ss_pred CCcccEEEEECCHH-----------HhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCC
Confidence 57999999886542 12234699999986543 2389999999998644
No 44
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=46.52 E-value=14 Score=33.60 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=33.1
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~ 127 (1100)
.-.|||.|.++|.-- +...|.|.+|+.++ -.+||.+.|+|++.
T Consensus 44 nP~Wne~f~f~v~~~-------------~~~~l~v~v~d~~~--~~~iG~~~i~l~~l 86 (105)
T cd04050 44 NPVWEEGFTFLVRNP-------------ENQELEIEVKDDKT--GKSLGSLTLPLSEL 86 (105)
T ss_pred CCcccceEEEEeCCC-------------CCCEEEEEEEECCC--CCccEEEEEEHHHh
Confidence 357999999998521 12358999998766 36999999999875
No 45
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=46.07 E-value=15 Score=34.42 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=32.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~ 127 (1100)
-.|||.|.+++... -+.-.|.|.+|+-.+... .+||++.|+|++.
T Consensus 50 PvWne~f~f~v~~~------------~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l 95 (108)
T cd04039 50 PVFNERLAFEVYPH------------EKNFDIQFKVLDKDKFSFNDYVATGSLSVQEL 95 (108)
T ss_pred CcccceEEEEEeCc------------cCCCEEEEEEEECCCCCCCcceEEEEEEHHHH
Confidence 46999998876411 012369999999865433 9999999999863
No 46
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=45.58 E-value=16 Score=34.65 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=35.1
Q ss_pred ceEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccc
Q 001323 69 GKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGI 129 (1100)
Q Consensus 69 GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gi 129 (1100)
-.-+|||.|.+++.+. ....|.|.+|+..+- +-.+||.+.|+|++...
T Consensus 45 ~nP~Wne~f~f~~~~~-------------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 45 LNPVFGKMFELEATLP-------------GNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCccceEEEEEecCC-------------CCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 3468999998886321 124799999987543 33999999999998743
No 47
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=45.10 E-value=19 Score=36.20 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=32.9
Q ss_pred EeecceeeeEEEEeecccCCCCcchhcccceeeeec-cc-ccccccccceeeecccccc
Q 001323 72 EFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLY-EP-RRDKTQLLATATIDLADYG 128 (1100)
Q Consensus 72 eFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnly-e~-rrdK~QlLGtA~inLAd~g 128 (1100)
.|||.|.+++.+ +...|.|.+| +. |..|-++||.+.|+|.++-
T Consensus 81 vfNE~F~f~v~l--------------~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~ 125 (146)
T cd04028 81 LYQQQLVFDVSP--------------TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD 125 (146)
T ss_pred ccCCeEEEEEcC--------------CCCEEEEEEEeCCCCCCCCceEEEEEEEccccc
Confidence 599999999861 2346999999 33 3345589999999999973
No 48
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=44.53 E-value=38 Score=31.51 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=45.8
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccccccceeecccccccccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRN 148 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn 148 (1100)
.-+|||.|.+++. + . .-.|.|.+|+..+- |-.+||.+.|+|++.=- .+......||.=++. .
T Consensus 45 nP~Wne~f~f~v~---~----------~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~--~ 107 (121)
T cd04042 45 NPVWDEKFTLPIE---D----------V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNS--D 107 (121)
T ss_pred CCccceeEEEEec---C----------C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCC--c
Confidence 3589999998752 1 0 13599999987553 44899999999987431 233444555543333 2
Q ss_pred CCCceEEEEee
Q 001323 149 TAQPVLFIKIQ 159 (1100)
Q Consensus 149 ~~qp~lyv~Iq 159 (1100)
...-.|.|.+.
T Consensus 108 ~~~G~l~l~~~ 118 (121)
T cd04042 108 EDLGYISLVVT 118 (121)
T ss_pred cCceEEEEEEE
Confidence 34455655553
No 49
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=44.45 E-value=34 Score=34.07 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=33.4
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
.-.|||.|.++|+-. + ..+|.|.+|+-..- +-.+||.+.|+|.++.
T Consensus 45 nP~WNE~F~f~v~~~------------~-~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~ 91 (150)
T cd04019 45 NPSWNEELMFVAAEP------------F-EDHLILSVEDRVGPNKDEPLGRAVIPLNDIE 91 (150)
T ss_pred CCcccCcEEEEecCc------------c-CCeEEEEEEEecCCCCCCeEEEEEEEHHHCc
Confidence 358999999987521 1 13788899875431 2389999999999964
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=43.69 E-value=17 Score=33.50 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=34.3
Q ss_pred EEe-ecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccc
Q 001323 71 IEF-NESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieF-nEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~ 127 (1100)
-.| ||.|.+++.... .+...|.|.+|+-.+- |-.+||.+.++|.+.
T Consensus 45 P~W~ne~f~f~i~~~~-----------l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 45 PVWNSEWFRFEVDDEE-----------LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92 (110)
T ss_pred CcccCcEEEEEcChHH-----------cCCCeEEEEEEeCCCCCCCCceEEEEEeHHHh
Confidence 468 899988863221 3456899999987653 338999999999874
No 51
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=42.18 E-value=29 Score=32.86 Aligned_cols=69 Identities=9% Similarity=0.284 Sum_probs=41.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc------------ccccccceeeeccccccccccceeecc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR------------DKTQLLATATIDLADYGIVKETLSVNA 138 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr------------dK~QlLGtA~inLAd~gii~e~~si~~ 138 (1100)
=+|||.|.+++. + + .-.|.|.+|+-.. .+-.+||.+.|+|++.. +....-.
T Consensus 46 P~Wne~f~f~~~---~----~-------~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~ 108 (127)
T cd04027 46 PVWNEKFHFECH---N----S-------SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS---GEMDVWY 108 (127)
T ss_pred CccceEEEEEec---C----C-------CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc---CCCCeEE
Confidence 468999976542 1 1 1258888987542 23479999999999853 4444555
Q ss_pred ccccccccccCCCceEEEE
Q 001323 139 PMNSKRSFRNTAQPVLFIK 157 (1100)
Q Consensus 139 p~n~krs~rn~~qp~lyv~ 157 (1100)
++..+ +-|..+|=.|-|+
T Consensus 109 ~L~~~-~~~~~~~G~i~~~ 126 (127)
T cd04027 109 NLEKR-TDKSAVSGAIRLH 126 (127)
T ss_pred ECccC-CCCCcEeEEEEEE
Confidence 55432 3444444444443
No 52
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=41.73 E-value=37 Score=32.02 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 001323 563 VAESKIQQLEHKINMLETELREAAA 587 (1100)
Q Consensus 563 ~~~~kieele~rie~LE~ELREaAA 587 (1100)
.+...+.+|+.+|.|||.||.+..+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777899999999999999776
No 53
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=41.68 E-value=22 Score=34.50 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=40.5
Q ss_pred EEeecceeeeEEEEeecccCCCCc--chhcccceeeeecccccc-cccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDA--DTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~--~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~ 127 (1100)
-.|||.|.+++....+...|.... +...+-.|+|.+|+..+- +-++||.+.|.|.+.
T Consensus 47 P~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l 106 (137)
T cd08675 47 PRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGL 106 (137)
T ss_pred CCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhc
Confidence 479999999987765433222111 223566899999988764 459999999998874
No 54
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=40.48 E-value=39 Score=31.30 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=32.7
Q ss_pred EeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccc
Q 001323 72 EFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (1100)
Q Consensus 72 eFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~ 127 (1100)
.+||.|.++|. +. ....|+|.+|+-+.-+-.+||.+.|+|++.
T Consensus 39 ~Wne~f~f~v~---~~----------~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l 81 (111)
T cd04052 39 SWNASTEFLVT---DR----------RKSRVTVVVKDDRDRHDPVLGSVSISLNDL 81 (111)
T ss_pred ccCCceEEEec---Cc----------CCCEEEEEEEECCCCCCCeEEEEEecHHHH
Confidence 58999988764 11 145689999987654348999999999987
No 55
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=39.87 E-value=25 Score=34.19 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=34.4
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~g 128 (1100)
-.|||.|..+|.-.- .-+.-.|.|.+|+-.. .|-++||.++|.|+++=
T Consensus 51 PvwNE~f~F~v~~~~----------~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~ 99 (120)
T cd08395 51 PKYNETFQFILGNED----------DPESYELHICVKDYCFARDDRLVGVTVLQLRDIA 99 (120)
T ss_pred CccCcEEEEEeeCcC----------CCceeEEEEEEEEecccCCCCEEEEEEEEHHHCc
Confidence 469999999986211 1234568999987532 33489999999999875
No 56
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=39.16 E-value=20 Score=36.17 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=34.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
-.|||.|.+++..- +. ...|+|.||+...- +-.+||.+.|+|+++-
T Consensus 59 PvWNE~f~f~v~~p-~~-----------~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~ 105 (151)
T cd04018 59 PEWNEQIVFPEMFP-PL-----------CERIKIQIRDWDRVGNDDVIGTHFIDLSKIS 105 (151)
T ss_pred CCcceEEEEEeeCC-Cc-----------CCEEEEEEEECCCCCCCCEEEEEEEeHHHhc
Confidence 57999999997532 11 13699999987543 4489999999999763
No 57
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=38.97 E-value=47 Score=31.44 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=44.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccccccc-ccceeecccccccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIV-KETLSVNAPMNSKRSFRN 148 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gii-~e~~si~~p~n~krs~rn 148 (1100)
-.|||.|.++|. + ...|.|.+|+... .+-.+||.+.|.|+++=-= .+....-+||.
T Consensus 60 P~Wne~f~~~v~---~------------~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------- 117 (132)
T cd04014 60 PVWNEEFTTEVH---N------------GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------- 117 (132)
T ss_pred CCcceeEEEEcC---C------------CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-------
Confidence 468999999885 1 2368999996543 2338999999999873210 13344555553
Q ss_pred CCCceEEEEeee
Q 001323 149 TAQPVLFIKIQP 160 (1100)
Q Consensus 149 ~~qp~lyv~IqP 160 (1100)
.+..|+|.|+-
T Consensus 118 -~~G~l~l~~~~ 128 (132)
T cd04014 118 -PQGKLHVKIEL 128 (132)
T ss_pred -CCcEEEEEEEE
Confidence 35677777753
No 58
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=38.04 E-value=96 Score=29.16 Aligned_cols=68 Identities=16% Similarity=0.345 Sum_probs=43.3
Q ss_pred eEEEeecC--CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-ccccc
Q 001323 41 VMIQWQNG--DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLL 117 (1100)
Q Consensus 41 VllqWENG--d~~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlL 117 (1100)
|.++.-+. ....+.|.++--++ .=.|||.|.+++.- + + ..-.|.|.+|+-++. +..+|
T Consensus 38 v~v~~~~~~~~~~~~rT~v~~~~~-------~P~wne~f~~~~~~-------~---~--~~~~l~v~v~d~~~~~~~~~i 98 (131)
T cd04026 38 VKLKLIPDPKNETKQKTKTIKKTL-------NPVWNETFTFDLKP-------A---D--KDRRLSIEVWDWDRTTRNDFM 98 (131)
T ss_pred EEEEEEcCCCCCceecceeecCCC-------CCCccceEEEeCCc-------h---h--cCCEEEEEEEECCCCCCccee
Confidence 44444332 23456666654433 23799999887531 1 1 224699999987553 44999
Q ss_pred ceeeeccccc
Q 001323 118 ATATIDLADY 127 (1100)
Q Consensus 118 GtA~inLAd~ 127 (1100)
|.+.|+|+++
T Consensus 99 G~~~~~l~~l 108 (131)
T cd04026 99 GSLSFGVSEL 108 (131)
T ss_pred EEEEEeHHHh
Confidence 9999999987
No 59
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=37.81 E-value=80 Score=29.89 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=44.7
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccccccccceeecccccc-ccccccC
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNS-KRSFRNT 149 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~gii~e~~si~~p~n~-krs~rn~ 149 (1100)
-.|||.|.+.+.- ....|.|.||+-++-+..+||.+.++|.++. +...-.+|+.- ++..++.
T Consensus 48 P~Wne~f~f~~~~--------------~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~ 110 (126)
T cd04046 48 PEFDTQAIFYRKK--------------PRSPIKIQVWNSNLLCDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGE 110 (126)
T ss_pred CcccceEEEEecC--------------CCCEEEEEEEECCCCCCCceEEEEEecccCC---CcCceEEEcccCCCCCCCC
Confidence 6799999876530 1237999999976655699999999998742 33334444431 1124444
Q ss_pred CCceEEEEee
Q 001323 150 AQPVLFIKIQ 159 (1100)
Q Consensus 150 ~qp~lyv~Iq 159 (1100)
+.=.|-|+++
T Consensus 111 ~~G~i~~~~~ 120 (126)
T cd04046 111 VPGTISVKVT 120 (126)
T ss_pred CCCEEEEEEE
Confidence 4444555543
No 60
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=37.12 E-value=22 Score=34.45 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=34.4
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~ 127 (1100)
-.|||.|.++|.. +......|+|.||+-.. .+-.+||.+.|-...+
T Consensus 64 P~fnE~F~f~i~~-----------~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 64 PSFNESFSFKVTS-----------RQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CcccceEEEECCH-----------HHhCccEEEEEEEeCCCCCCcceEEEEEECCccc
Confidence 5699999997642 34667889999997654 2238999999986554
No 61
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=36.83 E-value=24 Score=32.58 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=33.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~ 127 (1100)
-+|||.|.+.+..... -....|.|.+|+..+ .+-.+||.+.|.|+++
T Consensus 50 P~Wne~f~f~~~~~~~----------~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l 97 (111)
T cd04041 50 PVWEETWFVLVTPDEV----------KAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97 (111)
T ss_pred CccceeEEEEeCchhc----------cCCCEEEEEEEeCCCCCCCCcceEEEEEHHHH
Confidence 4699999877653211 012479999998754 2348999999999986
No 62
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=36.36 E-value=41 Score=31.30 Aligned_cols=60 Identities=15% Similarity=0.338 Sum_probs=40.4
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-----ccccccceeeeccccccccccceeecccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-----DKTQLLATATIDLADYGIVKETLSVNAPMNSKR 144 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-----dK~QlLGtA~inLAd~gii~e~~si~~p~n~kr 144 (1100)
-.|||.|.+++.... . .-|.|.+|+-.. .+-.+||.+.|+|.++ +-.+...+..++.|-|
T Consensus 52 P~wne~f~f~~~~~~-----------~--~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l-~~~~~~~~~~~l~~~~ 116 (120)
T cd04048 52 PDFVTTFTVDYYFEE-----------V--QKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI-VSSPGQKLTLPLKGGK 116 (120)
T ss_pred CCceEEEEEEEEeEe-----------e--eEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHH-hcCCCcEEEEEccCCC
Confidence 569999988854211 1 147788887653 2338999999999998 3445666666665543
No 63
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=35.47 E-value=22 Score=40.20 Aligned_cols=44 Identities=27% Similarity=0.681 Sum_probs=33.4
Q ss_pred CCCCCCCCCcccccCCCC-cc------------ccchhhhhhhhhhhHHHHhhhcCCC
Q 001323 856 PVSDPISDSKVLPIPAGK-SS------------FGAGAQLKNAIGNWSRWLSDLFGMD 900 (1100)
Q Consensus 856 PiSDPI~D~kVLPIPaG~-lS------------FGaGAQLKnaIgnWSRwLtDlFGid 900 (1100)
=|..|+.|..|+|+|.|. .+ +=.|--.-|+.+.| .||.++.+-.
T Consensus 183 GI~~~LvD~~v~plgsg~g~s~r~~~~vK~~~G~P~G~a~hN~~s~W-~wlr~~~k~~ 239 (296)
T PF02007_consen 183 GIENPLVDTAVTPLGSGAGISIRAIFAVKAKFGYPVGCAIHNAPSAW-KWLREYKKKE 239 (296)
T ss_pred CCcceeecccccCCcccchHHHHHHHHHHHHhCCCcccccccchhHH-HHHHHhcccc
Confidence 467799999999999976 22 22444556999999 9999986544
No 64
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=35.01 E-value=61 Score=30.35 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=32.1
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~g 128 (1100)
=.|||.|.+++.-. ...|.|.+|+..+ .+..+||.+.|.|++.=
T Consensus 52 P~Wne~f~f~~~~~--------------~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~ 96 (133)
T cd04033 52 PKWNEEFFFRVNPR--------------EHRLLFEVFDENRLTRDDFLGQVEVPLNNLP 96 (133)
T ss_pred CcEeeEEEEEEcCC--------------CCEEEEEEEECCCCCCCCeeEEEEEEHHHCC
Confidence 46999998876411 1358899998754 34489999999998854
No 65
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=34.90 E-value=31 Score=32.12 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=35.0
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~ 127 (1100)
.-.|||.|.+.+.... + -.-..|.|.+|+.++- +-.+||.+.|.|+++
T Consensus 46 nP~Wne~f~f~v~~~~-----~-----~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l 94 (124)
T cd04049 46 NPEWNEKFKFTVEYPG-----W-----GGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94 (124)
T ss_pred CCcccceEEEEecCcc-----c-----CCCCEEEEEEEECccCCCCCeEEEEEEEhHHh
Confidence 5789999998876431 0 0123688999987653 338999999999986
No 66
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=34.27 E-value=31 Score=33.73 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=33.1
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-------cccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-------KTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-------K~QlLGtA~inLAd~ 127 (1100)
=+|||.|.+++. + . . ..|+|.+|+-+.. +-.+||.+.|+|+++
T Consensus 48 P~WnE~f~f~v~---~----~------~-~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l 97 (126)
T cd08379 48 PRWNEQYTWPVY---D----P------C-TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTL 97 (126)
T ss_pred CcceeEEEEEec---C----C------C-CEEEEEEEECCCccccccCCCCceEEEEEEEHHHc
Confidence 478999999884 1 0 1 1699999997654 448999999999884
No 67
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=32.63 E-value=32 Score=33.07 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=34.5
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGI 129 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gi 129 (1100)
=.|||.|.+++.. +.++.-.|.|.+|+-.+ .|-.+||.+.|.+.+.|.
T Consensus 64 P~wnE~F~f~i~~-----------~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~ 112 (135)
T cd08410 64 PFYNESFSFKVPQ-----------EELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP 112 (135)
T ss_pred CccceeEEEeCCH-----------HHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc
Confidence 5799999876531 23444579999998654 333999999988866664
No 68
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=32.39 E-value=34 Score=32.67 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=37.1
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc-ccccceeeeccccccccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQLLATATIDLADYGIVKET 133 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK-~QlLGtA~inLAd~gii~e~ 133 (1100)
=.|||.|.+++..... ......|.|.+|+..+-+ -.+||.+.|.|++.=-+.++
T Consensus 68 P~wnE~f~f~i~~~~~---------~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~ 122 (133)
T cd04009 68 PLFDESFEFNVPPEQC---------SVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDT 122 (133)
T ss_pred CccCCEEEEEechhhc---------ccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccccc
Confidence 4699999999753210 011236999999876533 48999999999987544443
No 69
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=32.07 E-value=26 Score=33.21 Aligned_cols=43 Identities=35% Similarity=0.550 Sum_probs=32.7
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~ 127 (1100)
.-.|||.|.+.+. + + ..|.|.+|+-++-+. .+||.+.|+|++.
T Consensus 46 ~P~Wne~f~~~~~---~----~--------~~l~~~V~d~~~~~~~~~iG~~~i~l~~l 89 (125)
T cd04021 46 NPKWNEHFTVLVT---P----Q--------STLEFKVWSHHTLKADVLLGEASLDLSDI 89 (125)
T ss_pred CCccccEEEEEeC---C----C--------CEEEEEEEeCCCCCCCcEEEEEEEEHHHh
Confidence 4589999998763 1 1 259999998766433 8999999999884
No 70
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=31.12 E-value=37 Score=34.15 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=34.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
=.|||.|.+++.-. +.+....|+|.||+-.+. |-.+||.+.|+|+++-
T Consensus 77 P~WnE~f~f~~~~~----------~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 77 PVWNHTFVYDGVSP----------EDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred CCCCCEEEEecCCH----------HHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccc
Confidence 46999998875311 123345799999987653 3499999999999864
No 71
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=28.87 E-value=71 Score=32.08 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=35.5
Q ss_pred EEeecceeeeEEEE-------eecccCCCCcchhcccceeeeecccccc-cccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLL-------RDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~-------~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~g 128 (1100)
-.|||.|.+++... -++.. +.-+.-.|.|.+|+..+- +-.+||.+.|+|.+.-
T Consensus 48 P~wNE~F~F~v~~~~~~~~~~~~~~~-----~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~ 108 (148)
T cd04010 48 PQFDEAFYFDVTIDSSPEKKQFEMPE-----EDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLD 108 (148)
T ss_pred CccceEEEEEEecccccccccccCCc-----ccccEEEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence 57999999998532 11111 112235799999977543 3389999999998743
No 72
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=28.58 E-value=43 Score=32.78 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=36.6
Q ss_pred ceEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccccc
Q 001323 69 GKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYG 128 (1100)
Q Consensus 69 GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~g 128 (1100)
-...|||.|.+++.. +....--|.|.||+-.+ .|-.+||.+.|.++.-|
T Consensus 64 ~nPvfnEtF~f~i~~-----------~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 64 PDPEFKETFVFQVAL-----------FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred CCCcEeeeEEEECCH-----------HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 357899999999752 23455569999998754 33389999999887666
No 73
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=28.27 E-value=1.1e+02 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.5
Q ss_pred ceEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccccc
Q 001323 69 GKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYG 128 (1100)
Q Consensus 69 GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~g 128 (1100)
..-.|||.|.+.+.-.. . +. ..-.|.|.+|+.++ .+-.+||.+.|.|+|.=
T Consensus 45 ~~P~Wne~f~f~v~~~~-~---~~-----~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~ 96 (125)
T cd04051 45 TNPTWNETLRFPLDERL-L---QQ-----GRLALTIEVYCERPSLGDKLIGEVRVPLKDLL 96 (125)
T ss_pred CCCCCCCEEEEEcChHh-c---cc-----CccEEEEEEEECCCCCCCCcEEEEEEEHHHhh
Confidence 45789999998774211 0 00 02358899998776 33489999999999964
No 74
>PRK14127 cell division protein GpsB; Provisional
Probab=27.98 E-value=1.3e+02 Score=29.91 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCccccCch--------hhhhhHHHHHHhc
Q 001323 563 VAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAP--------ARRLSRLYLHACK 622 (1100)
Q Consensus 563 ~~~~kieele~rie~LE~ELREaAAlEvsLYSVVaEHGSSshKvHtP--------ARRLSRlYiHAcK 622 (1100)
.+...+.+|+.++..|+++|.+.-+ .++-|.-..++ ++.-.+ .+|||||=-|-+.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~-~~~~~~~~~~~----~~~~~~~~~tn~DiLKRls~LEk~VFg 103 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTK-QVSVGASSSSV----ATTQPSSSATNYDILKRLSNLEKHVFG 103 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc----cccCCCCCcchHHHHHHHHHHHHHHhc
Confidence 4455666777777777777776554 34433222221 111111 5899999776654
No 75
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=27.19 E-value=32 Score=31.99 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=33.7
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeecccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYG 128 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~g 128 (1100)
.-.|||.|.+...... ..+.-.|.|.||+.++-+-++||.+.|.|++.-
T Consensus 64 ~P~Wne~f~f~~~~~~----------~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 64 NPEFNETLTYYGITEE----------DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLK 112 (123)
T ss_pred CCCccceEEEcCCCHH----------HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCC
Confidence 3579999877422211 122347999999876544489999999999864
No 76
>PLN03008 Phospholipase D delta
Probab=26.82 E-value=83 Score=40.23 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=48.3
Q ss_pred EeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccccccceeeeccccccccccceeeccccccccccccCC-
Q 001323 72 EFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTA- 150 (1100)
Q Consensus 72 eFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn~~- 150 (1100)
.|||+|.++|+= .-.-|+|.+|+--.=+.+++|.|.|.|.++- . -..+..-+.+-+..++..
T Consensus 103 vWNE~F~f~vah--------------~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~--~-Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 103 LWDEKFNISIAH--------------PFAYLEFQVKDDDVFGAQIIGTAKIPVRDIA--S-GERISGWFPVLGASGKPPK 165 (868)
T ss_pred CcceeEEEEecC--------------CCceEEEEEEcCCccCCceeEEEEEEHHHcC--C-CCceEEEEEccccCCCCCC
Confidence 699999999762 1125999999743323499999999999942 2 222333333344444333
Q ss_pred -CceEEEEee--eccCc
Q 001323 151 -QPVLFIKIQ--PAEKS 164 (1100)
Q Consensus 151 -qp~lyv~Iq--P~~~~ 164 (1100)
-+.|.|++| ||.++
T Consensus 166 ~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 166 AETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCcEEEEEEEEEEcccc
Confidence 357777765 77666
No 77
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=26.02 E-value=51 Score=31.25 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=32.3
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc-ccccceeeeccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQLLATATIDLA 125 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK-~QlLGtA~inLA 125 (1100)
=.|||.|.+++.. +.++.-.|.|.||+-.+-+ -.++|.+.|.+.
T Consensus 64 P~wne~f~f~i~~-----------~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 64 PTYNEALVFDVPP-----------ENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CcccceEEEECCH-----------HHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 4699999987631 2344456899999876633 499999999865
No 78
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=25.88 E-value=2.2e+02 Score=25.90 Aligned_cols=57 Identities=33% Similarity=0.515 Sum_probs=37.5
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccc-cccccceeeeccccccccccceeecccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPM 140 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrd-K~QlLGtA~inLAd~gii~e~~si~~p~ 140 (1100)
.-.|||.|.+++.- + ....|.|.+|+..+- |..+||.+.+.|++. +-.+.....+|+
T Consensus 44 ~P~Wne~f~~~~~~-------~------~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l-~~~~~~~~~~~L 101 (115)
T cd04040 44 NPVWNESFEVPVPS-------R------VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL-EPEETTELTLPL 101 (115)
T ss_pred CCcccccEEEEecc-------C------CCCEEEEEEEeCCCCCCCCceEEEEEEHHHc-CCCCcEEEEEEC
Confidence 35789999887641 0 234688889977553 448999999999985 222333444444
No 79
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=24.41 E-value=62 Score=32.30 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccccccccceeeccccccccccccC
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNT 149 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gii~e~~si~~p~n~krs~rn~ 149 (1100)
=+|||.|.+++.- . -..|.|-+|+.++ .+-.+||.|.|+|.++--..+. ..++..
T Consensus 46 P~WnE~f~f~i~~---~-----------~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~----------~~~~~~ 101 (145)
T cd04038 46 PVWNEELTLSVPN---P-----------MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL----------DHLRDT 101 (145)
T ss_pred CeecccEEEEecC---C-----------CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh----------hccccC
Confidence 4899999998741 1 2358899998765 2338999999999885321111 013334
Q ss_pred CCceEEEEeeeccCc
Q 001323 150 AQPVLFIKIQPAEKS 164 (1100)
Q Consensus 150 ~qp~lyv~IqP~~~~ 164 (1100)
.-.+..-+++|-..+
T Consensus 102 ~~~~~~~~~~~~~~~ 116 (145)
T cd04038 102 PGGTQIKKVLPSVEN 116 (145)
T ss_pred CCCEEEEEEecCCCc
Confidence 445555688887655
No 80
>PF13943 WPP: WPP domain
Probab=24.30 E-value=29 Score=33.93 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=24.2
Q ss_pred HHHHHhhhhccccccCCCc------cccCchhhhhhHHHHHHhcccc
Q 001323 585 AAAIEASLYSVVAEHGSSM------SKVHAPARRLSRLYLHACKEDF 625 (1100)
Q Consensus 585 aAAlEvsLYSVVaEHGSSs------hKvHtPARRLSRlYiHAcK~~s 625 (1100)
|++||--=|+++-+|-... .=|+.=||-+|++-|-.-|..+
T Consensus 45 Ak~IEe~AF~~A~~~~~~~~d~dg~e~vq~YaKE~SklmLE~vK~~~ 91 (99)
T PF13943_consen 45 AKRIEEEAFAAANQHYETEPDGDGIEAVQLYAKEISKLMLEVVKSGP 91 (99)
T ss_pred HHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777777777743221 1244456777777777777544
No 81
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=24.12 E-value=1.5e+02 Score=28.90 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=36.4
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccccccccceeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIVKETLSVNAPMN 141 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~gii~e~~si~~p~n 141 (1100)
=+|||.|.++|. + + . .-|.|.+|+-.+ .|-.+||.+.|.|++.-.-.+....-+||.
T Consensus 47 P~WNe~F~f~v~---~----~-----~--~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~ 104 (121)
T cd04016 47 PRWNKTIQCTLP---E----G-----V--DSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLS 104 (121)
T ss_pred CccCeEEEEEec---C----C-----C--cEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCc
Confidence 479999999863 1 1 1 238899998655 333799999999986322222344444443
No 82
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=22.53 E-value=1.6e+02 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=30.6
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYG 128 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~g 128 (1100)
-.|||.|.+++. . + +. +-|.|.+|+..+ .|-..||.+.|.|+++-
T Consensus 46 P~WnE~f~f~~~------~-~-----~~-~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~ 91 (126)
T cd08400 46 PVWSEEFVFDDL------P-P-----DV-NSFTISLSNKAKRSKDSEIAEVTVQLSKLQ 91 (126)
T ss_pred CccCCEEEEecC------C-C-----Cc-CEEEEEEEECCCCCCCCeEEEEEEEHhHcc
Confidence 569999987642 1 1 11 246788887533 34489999999999764
No 83
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=21.94 E-value=42 Score=32.01 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=33.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeecccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLAD 126 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd 126 (1100)
-.|||.|.+++.. +..+...|+|.+|+-.+ .+-.+||.+.|++..
T Consensus 65 P~w~e~F~f~v~~-----------~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 65 PVFNESFVFDIPS-----------EELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CccCceEEEECCH-----------HHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 4699999887532 12355679999998654 234899999999987
No 84
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.59 E-value=1.1e+02 Score=27.85 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=21.7
Q ss_pred CccccchhHHHhhHHHHHHHHHHHHHH
Q 001323 555 YPRDTRSAVAESKIQQLEHKINMLETE 581 (1100)
Q Consensus 555 ~~e~~~~~~~~~kieele~rie~LE~E 581 (1100)
|...+.-.+|..+|.+|+.|+..||.|
T Consensus 10 ~AVrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 10 YAVREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp GT-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455668999999999999999988
No 85
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=20.89 E-value=74 Score=31.63 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccccc--------ccccceeee
Q 001323 51 NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK--------TQLLATATI 122 (1100)
Q Consensus 51 ~SGsT~~V~PSl~s~vG~GkieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK--------~QlLGtA~i 122 (1100)
..+.|+++-=++- =.|||.|-+++. +. ..|.|.+||-+.++ -.++|.|.|
T Consensus 31 ~~~KTk~i~~Tln-------PvWnE~F~i~l~-----~s----------~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 31 KKAKTRVCRDTTE-------PNWNEEFEIELE-----GS----------QTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred eeeeeeeecCCCC-------CccceEEEEEeC-----CC----------CEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 4577776543333 359999999874 11 27899999975433 289988888
Q ss_pred cc
Q 001323 123 DL 124 (1100)
Q Consensus 123 nL 124 (1100)
.|
T Consensus 89 ~L 90 (118)
T cd08686 89 QL 90 (118)
T ss_pred EE
Confidence 77
No 86
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=20.73 E-value=2.2e+02 Score=26.92 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=29.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH----HHHHHhhhhccccccCCCccccCchhhhh
Q 001323 563 VAESKIQQLEHKINMLETELRE----AAAIEASLYSVVAEHGSSMSKVHAPARRL 613 (1100)
Q Consensus 563 ~~~~kieele~rie~LE~ELRE----aAAlEvsLYSVVaEHGSSshKvHtPARRL 613 (1100)
...++...||..|.+|+..|++ -+|||-||.--..-+-++.+-+=++|+.|
T Consensus 5 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keL 59 (88)
T PF14389_consen 5 ALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKEL 59 (88)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHH
Confidence 3445666677777776666665 47888887543332433445555555543
No 87
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=20.57 E-value=67 Score=30.48 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=32.2
Q ss_pred eEEeecceeeeEEEEeecccCCCCcchhcccceeeeecccccccc-cccceeeeccccc
Q 001323 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADY 127 (1100)
Q Consensus 70 kieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rrdK~-QlLGtA~inLAd~ 127 (1100)
--.|||.|.+++.- + .-.|.|.+|+..+-.. .+||.+.+.|+++
T Consensus 46 ~P~Wne~f~~~v~~-------~-------~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l 90 (120)
T cd04045 46 NPVWDEVLYVPVTS-------P-------NQKITLEVMDYEKVGKDRSLGSVEINVSDL 90 (120)
T ss_pred CCccCceEEEEecC-------C-------CCEEEEEEEECCCCCCCCeeeEEEEeHHHh
Confidence 36799999887531 1 1258999998765433 7999999999985
No 88
>COG1865 cbiZ Adenosylcobinamide amidohydrolase [Coenzyme metabolism]
Probab=20.56 E-value=39 Score=36.48 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.5
Q ss_pred hhhHHHhhcccCCCCCCCCCCChHHHHhhcccc
Q 001323 957 APLIKRVLDNFCPDEFCPDPIPRVVLEALDSED 989 (1100)
Q Consensus 957 lpLIkRIL~nF~PDEFcPDPVP~~VlEaLnsE~ 989 (1100)
.-.++.+...+||++||||++-+.+.+-|..-.
T Consensus 27 ~~~~~~~~n~~Vp~~y~~d~~~~~~~~~l~~~g 59 (200)
T COG1865 27 FKRVRTVINKTVPKDYSPDVPEGYVTEFLSKLG 59 (200)
T ss_pred hheeeeEEEEECCcccCCCchHHHHHHHHHHcC
Confidence 457888999999999999999988877776554
No 89
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=20.48 E-value=1.4e+02 Score=25.86 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 001323 565 ESKIQQLEHKINMLETELREAAA 587 (1100)
Q Consensus 565 ~~kieele~rie~LE~ELREaAA 587 (1100)
.++||||++-+=+||-|+||..+
T Consensus 3 k~~ieelkqll~rle~eirett~ 25 (46)
T PF08181_consen 3 KKKIEELKQLLWRLENEIRETTD 25 (46)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999865
No 90
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=20.02 E-value=74 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=34.8
Q ss_pred EEeecceeeeEEEEeecccCCCCcchhcccceeeeeccccc-ccccccceeeeccccc
Q 001323 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADY 127 (1100)
Q Consensus 71 ieFnEsFrL~vtl~~e~s~kg~~~~~f~KN~LEfnlye~rr-dK~QlLGtA~inLAd~ 127 (1100)
-.|||+|...|.. +.-++--|.|.||+--| .+-.++|-+.+.|++.
T Consensus 60 PvfnE~f~F~v~~-----------~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 60 TQWEEELVFPLPE-----------EESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV 106 (118)
T ss_pred CccccEEEEeCCH-----------HHhCCcEEEEEEEeCCCCCCCceEEEEEEccccc
Confidence 4699999998762 23445569999998744 4449999999999964
Done!