BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001324
(1100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 273 bits (698), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/324 (46%), Positives = 209/324 (64%), Gaps = 10/324 (3%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDV 160
+++V +R RPL+ RE G+ Y D V + + + ++ FDRVF + ++ VY+
Sbjct: 5 AVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEE 64
Query: 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREF 220
A P++ +A++G NGT+FAYG T+SGKT+TM G ++ G+IP AI D+F I+ P REF
Sbjct: 65 IAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREF 124
Query: 221 LLRVSYLEIYNEVINDLLDPTGQN--LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAG 277
LLRVSY+EIYNE I DLL T + L +RED + YV + EEVV + AL +I G
Sbjct: 125 LLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKG 184
Query: 278 EEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD---GVIFSQLNLIDLAGSE-SSKT 333
E+ RH G N SSRSHTIF +++ES + G+ + V S LNL+DLAGSE +++T
Sbjct: 185 EKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQT 244
Query: 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLI 392
G+R KEG IN+SL LG VI KLS+G+ + YRDSKLTR+LQ+SL G+ +I
Sbjct: 245 GAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRII 304
Query: 393 CTVTPASSSMEETHNTLKFASRAK 416
CT+TP S +ET L+FAS AK
Sbjct: 305 CTITPV--SFDETLTALQFASTAK 326
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 242 bits (618), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 195/326 (59%), Gaps = 14/326 (4%)
Query: 101 SISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYD 159
+I V RFRPL+E E RGD+ IA + D +V + YAFDRVF + ++VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYN 63
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAIKDVFSIIQDT- 215
A+ +VK +EG NGT+FAYG TSSGKTHTM G + P GIIP ++D+F+ I
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSFI 274
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP + I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKT 333
G+ +RHV N N SSRSH+IF + ++ + E + +L L+DLAGSE SKT
Sbjct: 184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK--LSGKLYLVDLAGSEKVSKT 241
Query: 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393
G E INKSL LG VI L+EG +++VPYRDSK+TR+LQ SL G+ +++
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 394 TVTPASSSMEETHNTLKFASRAKRVE 419
+P+S + ET +TL F RAK ++
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 242 bits (617), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/338 (42%), Positives = 196/338 (57%), Gaps = 18/338 (5%)
Query: 88 MAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRV 147
MA+P + +I V RFRPL+E E RGD+ G+ V P YAFDRV
Sbjct: 1 MADPAEC------NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP---YAFDRV 51
Query: 148 FGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLA 204
F + ++VY+ A+ +VK +EG NGT+FAYG TSSGK HTM G + P GIIP
Sbjct: 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRI 111
Query: 205 IKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEE 262
++D+F+ I EF ++VSY EIY + I DLLD + NL V ED YV+G E
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTER 171
Query: 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNL 322
V SP + I G+ +RHV N N SSRSH+IF + ++ + E + +L L
Sbjct: 172 FVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK--LSGKLYL 229
Query: 323 IDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQS 381
+DLAGSE SKT G E INKSL LG VI L+EG +++VPYRDSK+TR+LQ
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQD 288
Query: 382 SLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 419
SL G+ +++ +P+S + ET +TL F RAK ++
Sbjct: 289 SLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 242 bits (617), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 194/325 (59%), Gaps = 14/325 (4%)
Query: 101 SISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYD 159
+I V RFRPL+E E RGD+ IA + D +V + YAFDRVF + ++VY+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYN 63
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAIKDVFSIIQDT- 215
A+ +VK +EG NGT+FAYG TSSGKTHTM G + P GIIP ++D+F+ I
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 216 PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSFI 274
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP + I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKT 333
G+ +RHV N N SSRSH+IF + ++ + E + +L L+DLAGSE SKT
Sbjct: 184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK--LSGKLYLVDLAGSEKVSKT 241
Query: 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393
G E INKSL LG VI L+EG +++VPYRDSK+TR+LQ SL G+ +++
Sbjct: 242 GAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 394 TVTPASSSMEETHNTLKFASRAKRV 418
+P+S + ET +TL F RAK +
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 201/348 (57%), Gaps = 10/348 (2%)
Query: 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPA-TAYAFDRVFGPHANSQEVY 158
DSI V RFRPL++ E + G + + + N + A Y FD+VF P+A+ ++VY
Sbjct: 11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNN-VEENCISIAGKVYLFDKVFKPNASQEKVY 69
Query: 159 DVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG---DQNSPGIIPLAIKDVFS-IIQD 214
+ AA+ +V + G NGT+FAYG TSSGKTHTM G D GIIP + D+F+ I
Sbjct: 70 NEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAM 129
Query: 215 TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSF 273
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP
Sbjct: 130 EVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEV 189
Query: 274 IAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SK 332
I G+ +RH+ N N SSRSH++F + ++ + ++ + +L L+DLAGSE SK
Sbjct: 190 IEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKK--LSGKLYLVDLAGSEKVSK 247
Query: 333 TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392
T G E INKSL LG VI L++G +H+PYRDSKLTR+LQ SL G+ +++
Sbjct: 248 TGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIV 307
Query: 393 CTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQRE 440
+PAS + ET +TL F RAK V+ N+ + + ++Y++E
Sbjct: 308 ICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKE 355
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/339 (41%), Positives = 199/339 (58%), Gaps = 16/339 (4%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYAD---GDKIVRNEYNPA----TAYAFDRVF 148
Q S +S+ V +R RP++ +E + D G V+N A + FD V+
Sbjct: 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVY 76
Query: 149 GPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAI 205
+A E+YD RP+V + ++G NGT+FAYG T +GKT+TM G + P G+IP +
Sbjct: 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSF 136
Query: 206 KDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL--DPTGQ-NLRVREDAQGTYVEGIKEE 262
+F+ I + +++L+R SYLEIY E I DLL D T + L+ R D G YV+ +
Sbjct: 137 DHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDT-GVYVKDLSSF 195
Query: 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG-DEYDGVIFSQLN 321
V S + G ++R VG+ N N SSRSH IF + IE S+ G D + + +LN
Sbjct: 196 VTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLN 255
Query: 322 LIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQ 380
L+DLAGSE +KT G R KE + IN SL LG VI L +GK++H+PYRDSKLTRLLQ
Sbjct: 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQ 315
Query: 381 SSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 419
SL G+ ++ V PAS ++EET TL++A+RAK ++
Sbjct: 316 DSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 225 bits (574), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 191/338 (56%), Gaps = 14/338 (4%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQE 156
S +SI V RFRP + E + G + I + D + ++ FDRVF +
Sbjct: 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG----DQNSPGIIPLAIKDVF-SI 211
++D + +P V + G NGTVFAYG T +GK++TM G D + G+IP ++ +F SI
Sbjct: 64 IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 123
Query: 212 IQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHA 270
+ E+ +RVSY+EIY E I DLL P NL V E+ +G YV+G+ E V S
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEV 183
Query: 271 LSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI--ESSDHGDEYDGVIFSQLNLIDLAGS 328
+ G R V + N N SSRSH+IF + I ++ + G G QL L+DLAGS
Sbjct: 184 YEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSG----QLFLVDLAGS 239
Query: 329 ES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 387
E KT +G +E INKSL LG VI L++GK+SHVPYRDSKLTR+LQ SL G+
Sbjct: 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299
Query: 388 HVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425
+LI +P+S + ET +TL+F RAK ++ A N
Sbjct: 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 337
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 195/337 (57%), Gaps = 17/337 (5%)
Query: 98 SGDSISVTIRFRPLSEREFQ-------RGDE-----IAWYADGDKIVRNEYNPATAYAFD 145
S D+I V +R RPL+ RE + R DE I + +K + FD
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAI 205
V+ + + ++ + +P++ A +EG N T+FAYG T +GKT TM G++ PG IP +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 206 KDVFSIIQDTPGRE-FLLRVSYLEIYNEVINDLLDPTGQNLRVRED-AQGTYVEGIKEEV 263
K +F I + + FL+ SYLE+YNE I DL+ L ++ED +G YV+G+
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHR 180
Query: 264 VLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLI 323
V + + + G +RHV + N SSRSH+IF + IE S+ + + + +LNL+
Sbjct: 181 VTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLV 240
Query: 324 DLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS 382
DLAGSE SKT TG EG+ IN SL LG VI KL EG A+H+PYRDSKLTRLLQ S
Sbjct: 241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG-ATHIPYRDSKLTRLLQDS 299
Query: 383 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 419
L G+ + ++PAS++ +ET +TL++A RAK+++
Sbjct: 300 LGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 214 bits (545), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 199/363 (54%), Gaps = 40/363 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYAD---GDKIVRNEYN-----PATAYAFDRV 147
Q + +++ V R RPLS +E G E D G +RN P T + FD V
Sbjct: 17 QGASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKT-FTFDAV 75
Query: 148 FGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLA 204
+ + ++YD RP++ + ++G NGTVFAYG T +GKT+TM G P G+IP A
Sbjct: 76 YDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNA 135
Query: 205 IKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDP-TGQNLRVREDAQ-GTYVEGIKEE 262
+ +F+ I + +++L+R SYLEIY E I DLL G+ L ++E+ + G Y++ +
Sbjct: 136 FEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSF 195
Query: 263 VVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG-DEYDGVIFSQLN 321
V + + G + R VGS + N +SSRSH IF + +E S+ G D D + +LN
Sbjct: 196 VTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLN 255
Query: 322 LIDLAGSE---SSKTETTGL----------------------RRKEGSYINKSLLTLGTV 356
L+DLAGSE + T G R KE S IN SL LG V
Sbjct: 256 LVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNV 315
Query: 357 IGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416
I L+ +++H+PYRDSKLTRLLQ SL G+ ++ T+ PAS S +E+ +TL+FA+RAK
Sbjct: 316 IAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAK 375
Query: 417 RVE 419
++
Sbjct: 376 NIK 378
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 209 bits (533), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 200/349 (57%), Gaps = 27/349 (7%)
Query: 95 PQR-SGDSISVTIRFRPLSERE--FQRGDEIAWYADGDKIVRNEYNP--ATAYAFDRVFG 149
PQ+ S +I V +R RPL+ RE + + + + + R+ + + FDR FG
Sbjct: 17 PQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFG 76
Query: 150 PHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG-----------DQNSP 198
P + +VY V P+++ + G N TVFAYG T +GKTHTM G D +
Sbjct: 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDI 136
Query: 199 GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL--DPTGQNLRVREDAQ---G 253
GIIP A+ +F ++ E+ +R+SYLE+YNE + DLL D T + +R+ +D+
Sbjct: 137 GIIPRALSHLFDELRMME-VEYTMRISYLELYNEELCDLLSTDDTTK-IRIFDDSTKKGS 194
Query: 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313
++G++E V S + G+E R + N SSRSHT+F++++ ++G E +
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254
Query: 314 GVI-FSQLNLIDLAGSE--SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPY 370
++ +LNL+DLAGSE S G+R +E IN+SLLTLG VI L + +A HVPY
Sbjct: 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPY 313
Query: 371 RDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 419
R+SKLTRLLQ SL G S+I T++P +EET +TL++A RAK ++
Sbjct: 314 RESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 186/346 (53%), Gaps = 31/346 (8%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNP----------ATAYAFDRVFGP- 150
+ V +R RP++ RE + D +K++ N N +A+D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 151 -------HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPL 203
+A V+ +++ A +G N +FAYG T SGK++TM G + PG+IP
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 204 AIKDVFSIIQDTPGRE--FLLRVSYLEIYNEVINDLLDPTG--QNLRVREDAQ-GTYVEG 258
+F Q E F + VSY+EIYNE + DLLDP G Q L+VRE + G YV+G
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDG 182
Query: 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESS--DHGDEYDGVI 316
+ + V S S ++ G + R V + N N SSRSH +F + + + D G
Sbjct: 183 LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEK 242
Query: 317 FSQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPY 370
+L+L+DLAGSE ++KT G R KEGS INKSL TLG VI L++ K VPY
Sbjct: 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPY 302
Query: 371 RDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416
RDS LT LL+ SL G+ +++ TV+PA+ + +ET +TL++A RAK
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 184/334 (55%), Gaps = 21/334 (6%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVA 161
+ V +R RPL +E G + + + R + F V A + VY
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVE-PGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-------QNSPGIIPLAIKDVFSIIQD 214
+P+++A EG N TVFAYG T SGKT+TM G+ ++ GI+P A+ + F +I +
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 215 TPGREFLLRVSYLEIYNEVINDLLD--PTGQNLRVREDAQGTYVE-GIKEEVVLSPGHAL 271
+ L+ VSYLE+Y E DLL+ +++++RED +G V G+KE V L
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVL 190
Query: 272 SFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY------DGVIFSQLNLIDL 325
S + G RH G+ + N LSSRSHT+FT+ +E ++ S+ + +DL
Sbjct: 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDL 250
Query: 326 AGSESS-KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKLTRLLQSS 382
AGSE KT +TG R KE IN SLL LG VI L + + SH+PYRDSK+TR+L+ S
Sbjct: 251 AGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDS 310
Query: 383 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416
L G+ +I V+P+SS +ET NTL +ASRA+
Sbjct: 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 184/334 (55%), Gaps = 21/334 (6%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVA 161
+ V +R RPL +E G + + + R + F V A + VY
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVE-PGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-------QNSPGIIPLAIKDVFSIIQD 214
+P+++A EG N TVFAYG T SGKT+TM G+ ++ GI+P A+ + F +I +
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTYTM-GEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 215 TPGREFLLRVSYLEIYNEVINDLLD--PTGQNLRVREDAQGTYVE-GIKEEVVLSPGHAL 271
+ L+ VSYLE+Y E DLL+ +++++RED +G V G+KE V L
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVL 190
Query: 272 SFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY------DGVIFSQLNLIDL 325
S + G RH G+ + N LSSRSHT+FT+ ++ ++ S+ + +DL
Sbjct: 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDL 250
Query: 326 AGSESS-KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKLTRLLQSS 382
AGSE KT +TG RKE IN SLL LG VI L + + S++PYRDSK+TR+L+ S
Sbjct: 251 AGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDS 310
Query: 383 LSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416
L G+ +I V+P+SS +ET NTL +ASRA+
Sbjct: 311 LGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 195 bits (496), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 191/352 (54%), Gaps = 40/352 (11%)
Query: 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFDRVF 148
G +I V +R RP + E + +D VR E + T Y FD VF
Sbjct: 16 GKNIQVVVRVRPFNLAERKASAHSIVESDP---VRKEVSVRTGGLADKSSRKTYTFDMVF 72
Query: 149 GPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---------- 198
G +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 73 GASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGER-SPNEEYCWEEDP 131
Query: 199 --GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED--- 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 132 LAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 251 AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---ESSD 307
+G ++G++E V + + G R + N SSRSH++F++ I E++
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 308 HGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKAS 366
G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E +
Sbjct: 251 DGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 307
Query: 367 HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/373 (35%), Positives = 199/373 (53%), Gaps = 35/373 (9%)
Query: 85 EELMAEPLDAPQRSGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNP---AT 140
+++ +P++ P G S+ V +R RP + RE R + I + + N P
Sbjct: 8 QQMGRDPINMP---GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPK 64
Query: 141 AYAFDRVFGPH--------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192
+++FD + H A+ ++VY +++ A EG N +FAYG T +GK++TM
Sbjct: 65 SFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 124
Query: 193 GDQ--NSPGIIPLAIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRV 247
G Q + GIIP +D+FS I DT + + VSY+EIY E + DLL+P + NLRV
Sbjct: 125 GKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRV 184
Query: 248 REDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESS 306
RE G YVE + + V S + +G + R V + N N SSRSH +F ++
Sbjct: 185 REHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQK 244
Query: 307 DHGDEYDGVI--FSQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSE- 362
H E + S+++L+DLAGSE + T G R KEG+ INKSL TLG VI L+E
Sbjct: 245 RHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEM 304
Query: 363 ----------GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 412
K +PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A
Sbjct: 305 DSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYA 364
Query: 413 SRAKRVEIYASRN 425
RAK++ S N
Sbjct: 365 DRAKQIRNTVSVN 377
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLDGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 248 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EVPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 248 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 248 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 12 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 68
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 69 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 127
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 128 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 186
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 187 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 246
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 247 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 303
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 304 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 13 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 69
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 70 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 128
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 129 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 187
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 248 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 304
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 305 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 15 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 71
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 72 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 130
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 131 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 189
Query: 251 AQ---GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+ G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 190 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 249
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 250 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 306
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 307 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 193 bits (490), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 191/355 (53%), Gaps = 40/355 (11%)
Query: 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFD 145
+ G +I V +R RP + E + D VR E + T Y FD
Sbjct: 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFD 60
Query: 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP------- 198
VFG +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 61 MVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWE 119
Query: 199 -----GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 120 EDPLAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDD 178
Query: 251 ---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---E 304
+G ++G++E V + + G R + N SSRSH++F++ I E
Sbjct: 179 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238
Query: 305 SSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG 363
++ G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E
Sbjct: 239 TTIDGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE- 295
Query: 364 KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 296 RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 190/352 (53%), Gaps = 40/352 (11%)
Query: 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA----------YAFDRVF 148
G +I V +R RP + E + D VR E + T Y FD VF
Sbjct: 1 GKNIQVVVRCRPFNLAERKASAHSIVECDP---VRKEVSVRTGGLADKSSRKTYTFDMVF 57
Query: 149 GPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---------- 198
G +VY P++ + G N T+FAYG T +GKT TM G++ SP
Sbjct: 58 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGER-SPNEEYTWEEDP 116
Query: 199 --GIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED--- 250
GIIP + +F + D G EF ++VS LEIYNE + DLL+P+ + L++ +D
Sbjct: 117 LAGIIPRTLHQIFEKLTDN-GTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 175
Query: 251 AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI---ESSD 307
+G ++G++E V + + G R + N SSRSH++F++ I E++
Sbjct: 176 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 235
Query: 308 HGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKAS 366
G+E V +LNL+DLAGSE+ ++ R +E IN+SLLTLG VI L E +
Sbjct: 236 DGEEL--VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTP 292
Query: 367 HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
HVPYR+SKLTR+LQ SL G S+I T++PAS ++EET +TL++A RAK +
Sbjct: 293 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 192/360 (53%), Gaps = 32/360 (8%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPA---TAYAFDRVFGPH-- 151
+G S+ V +R RP + RE R + I + + N P +++FD + H
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 152 ------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPL 203
A+ ++VY +++ A EG N +FAYG T +GK++TM G Q + GIIP
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 204 AIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRVREDAQ-GTYVEGI 259
+D+FS I DT + + VSY+EIY E + DLL+P + NLRVRE G YVE +
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 260 KEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI--F 317
+ V S + +G + R V + N N SSRSH +F ++ H E +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241
Query: 318 SQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----------GKA 365
S+++L+DLAGSE + T G R KEG+ INKSL TLG VI L+E K
Sbjct: 242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 366 SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425
+PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A RAK++ S N
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 192/360 (53%), Gaps = 32/360 (8%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPA---TAYAFDRVFGPH-- 151
+G S+ V +R RP + RE R + I + + N P +++FD + H
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 152 ------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPL 203
A+ ++VY +++ A EG N +FAYG T +GK++TM G Q + GIIP
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 204 AIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRVREDAQ-GTYVEGI 259
+D+FS I DT + + VSY+EIY E + DLL+P + NLRVRE G YVE +
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 260 KEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI--F 317
+ V S + +G + R V + N N SSRSH +F ++ H E +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241
Query: 318 SQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----------GKA 365
S+++L+DLAGSE + T G R KEG+ INKSL TLG VI L+E K
Sbjct: 242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 366 SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425
+PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A RAK++ S N
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 190 bits (482), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 129/360 (35%), Positives = 192/360 (53%), Gaps = 32/360 (8%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPA---TAYAFDRVFGPH-- 151
+G S+ V +R RP + RE R + I + + N P +++FD + H
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 152 ------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPL 203
A+ ++VY +++ A EG N +FAYG T +GK++TM G Q + GIIP
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 121
Query: 204 AIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPTGQ-NLRVREDAQ-GTYVEGI 259
+D+FS I DT + + VSY+EIY E + DLL+P + NLRVRE G YVE +
Sbjct: 122 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDL 181
Query: 260 KEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI--F 317
+ V S + +G + R V + N N SSRSH +F ++ H E +
Sbjct: 182 SKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV 241
Query: 318 SQLNLIDLAGSE-SSKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----------GKA 365
S+++L+DLAGSE + T G R KEG+ INKSL TLG VI L+E K
Sbjct: 242 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 366 SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425
+PYRDS LT LL+ +L G+ +++ ++PA + +ET +TL++A RAK++ S N
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 190 bits (482), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 176/328 (53%), Gaps = 43/328 (13%)
Query: 141 AYAFDRVFGPH-------ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193
++ FD+ F H A + VYD + EG + +FAYG T SGK++TM G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 194 DQNSPGIIPLAIKDVFSII----QDTPGREFLLRVSYLEIYNEVINDLLDPTGQN----- 244
+ PG+IP +D+F I +TP + ++VSY E+YNE + DLL P N
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 245 LRVRED-AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMI 303
L+VRE +G YV+ + E V + ++ G+ R V S N SSRSH +FT+M+
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 304 ESSDHGDEYDGVI--FSQLNLIDLAGSESSK-TETTGLRRKEGSYINKSLLTLGTVIGKL 360
+ H E D S++ L+DLAGSE +K TE TG R +EGS INKSL TLG VI L
Sbjct: 277 KQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAAL 336
Query: 361 SEGKASH---------------------VPYRDSKLTRLLQSSLSGHGHVSLICTVTPAS 399
++ K+S VPYRDS LT LL+ SL G+ ++I ++P
Sbjct: 337 ADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP-- 394
Query: 400 SSMEETHNTLKFASRAKRVEIYASRNKI 427
+ +ET +TL++A +AKR+ A N++
Sbjct: 395 TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 160/286 (55%), Gaps = 14/286 (4%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGII 201
Y FD +G + Q++Y + +P+++ +EG N +V AYG T +GKTHTM G PG+I
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 202 PLAIKDVFSIIQD--TPGREFLLRV--SYLEIYNEVINDLLDPTGQNLRVREDAQG-TYV 256
P A+ D+ + ++ GR + L V SYLEIY E + DLLDP +L +RED +G +
Sbjct: 127 PRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILI 186
Query: 257 EGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY---D 313
G+ ++ + S +R VG+ N SSRSH + + ++ + + +
Sbjct: 187 PGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE 246
Query: 314 GVIFSQLNLIDLAGSESS-KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRD 372
G +L LIDLAGSE + +T GLR KE IN SL LG V+ L++G VPYRD
Sbjct: 247 G----KLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQG-LPRVPYRD 301
Query: 373 SKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
SKLTRLLQ SL G H LI + P +T + L FA+R+K V
Sbjct: 302 SKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 165/288 (57%), Gaps = 7/288 (2%)
Query: 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN 196
N + FD VF + EV++ +P++++ + G N TV AYG T +GKTHTM G +
Sbjct: 69 NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD 128
Query: 197 SPGIIPLAIKDVFSIIQDTPGREFL-LRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GT 254
PG++ L + ++ + + + VSYLE+YNE I DLL +G L VRED Q G
Sbjct: 129 EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP-LAVREDTQKGV 187
Query: 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD- 313
V G+ S L + G ++R + N SSRSH +F + + D +
Sbjct: 188 VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQ 247
Query: 314 GVIFSQLNLIDLAGSESSKTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKAS--HVPY 370
V ++++LIDLAGSE + T G R EG+ IN+SLL LG VI L++ K H+PY
Sbjct: 248 NVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPY 307
Query: 371 RDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
R+SKLTRLL+ SL G+ +I V+P+S ++T+NTLK+A+RAK +
Sbjct: 308 RNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 169/293 (57%), Gaps = 11/293 (3%)
Query: 137 NPATAYAFDRVFGPHANSQE-VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG-- 193
N T ++F H SQ+ VY+ A+ VV A++G NGT+ YG T +GKT+TM G
Sbjct: 67 NQQTDWSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGAT 126
Query: 194 -DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLD------PTGQNLR 246
+ GI+P A++ VF +I++ P +RVSYLEIYNE + DLL P+ +
Sbjct: 127 ENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMT 186
Query: 247 VREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESS 306
+ E+ QG +++G+ + A S + GE +R + S+ N SSRSH IFT+ +E+
Sbjct: 187 IVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH 246
Query: 307 DHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA 365
+ I S++NL+DLAGSE K+ + G KE +YINKSL L I L + K
Sbjct: 247 SRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR 306
Query: 366 SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
H+P+R KLT L+ SL G+ ++ L+ + ++ +EET ++L+FASR K V
Sbjct: 307 DHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 186/325 (57%), Gaps = 12/325 (3%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY--NPATAYAFDRVFGPHANSQEVYD 159
I V R RPL+E+E ++ + V + + + + +DRVF A+ ++++
Sbjct: 15 IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFE 74
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQ-DTPGR 218
+ +V++A++G N +FAYG T SGKT T++G +++PG+ P A K++F+I++ D+
Sbjct: 75 -DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRF 133
Query: 219 EFLLRVSYLEIYNEVINDLLDPTGQ---NLRVREDAQG-TYVEGIKEEVVLSPGHALSFI 274
F L+ +E+Y + + DLL P L +++D++G +VE + + + +
Sbjct: 134 SFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELRMIL 193
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKT 333
G E RHV N N SSRSH I +++IES D + +L+ +DLAGSE K+
Sbjct: 194 ERGSERRHVSGTNMNEESSRSHLILSVVIESIDL--QTQSAARGKLSFVDLAGSERVKKS 251
Query: 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393
+ G + KE INKSL LG VIG LS G H+PYR+ KLT L+ SL G+ +
Sbjct: 252 GSAGNQLKEAQSINKSLSALGDVIGALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFV 310
Query: 394 TVTPASSSMEETHNTLKFASRAKRV 418
V+PA S+++ET+N+L +ASR + +
Sbjct: 311 NVSPAESNLDETYNSLLYASRVRTI 335
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 204/365 (55%), Gaps = 18/365 (4%)
Query: 102 ISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY--NPATAYAFDRVFGPHANSQEVYD 159
I V R RPL E+E + A + + V + + + A + +DRVF +A +V++
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE 66
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQ-DTPGR 218
+ +V++A++G N +FAYG T SGKT T++G ++PG+ P A+ ++F I++ D+
Sbjct: 67 -DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKF 125
Query: 219 EFLLRVSYLEIYNEVINDLLDPTGQN---LRVREDAQGTY-VEGIKEEVVLSPGHALSFI 274
F L+ +E+Y + + DLL P L +++D++G VE + + + + I
Sbjct: 126 SFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTII 185
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKT 333
G E RH N SSRSH I +++IES++ + + +L+ +DLAGSE K+
Sbjct: 186 QRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL--QTQAIARGKLSFVDLAGSERVKKS 243
Query: 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393
+ G + KE INKSL LG VI LS G H+PYR+ KLT L+ SL G+ +
Sbjct: 244 GSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFV 302
Query: 394 TVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKK---YQREISSLK---EE 447
++PA S+++ETHN+L +ASR + + S+N E + +KK Y +E + K EE
Sbjct: 303 NISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEE 362
Query: 448 LDQLK 452
L++++
Sbjct: 363 LEEIQ 367
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 179/344 (52%), Gaps = 22/344 (6%)
Query: 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPH 151
D+I V R RP E E R W + V + A A ++FD+VF P
Sbjct: 59 DNIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 117
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSI 211
++ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F
Sbjct: 118 SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 176
Query: 212 IQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLS 266
I+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 236
Query: 267 PGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLA 326
P H + + +R S N SSRSH + L E E + +NL+DLA
Sbjct: 237 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL--ELIGRHAEKQEISVGSINLVDLA 294
Query: 327 GSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGH 386
GSES KT T R E IN+SL L VI L + K H+PYR+SKLT LL SL G+
Sbjct: 295 GSESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGN 350
Query: 387 GHVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 429
+ V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 351 SKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 394
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 178/338 (52%), Gaps = 33/338 (9%)
Query: 102 ISVTIRFRPLSEREFQRGD----------EIAWYADGDKIVRNEYNPATAYAFDRVFGPH 151
I V +R RPL+++E + + + + K+ +Y A+ FD F
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-----QN-SPGIIPLAI 205
A+++ VY ARP+V+ EG T FAYG T SGKTHTM GD QN S GI +A
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 206 KDVFSIIQDTPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKE 261
+DVF ++++ P L + V++ EIYN + DLL+ + LRV ED+ Q V G++E
Sbjct: 193 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQE 250
Query: 262 EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLN 321
+V + I G R G N SSRSH F +++ + G + + +
Sbjct: 251 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-------GRLHGKFS 303
Query: 322 LIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLL 379
L+DLAG+E ++ R R EG+ INKSLL L I L + KA H P+R+SKLT++L
Sbjct: 304 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVL 362
Query: 380 QSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAK 416
+ S G + +I ++P SS E T NTL++A R K
Sbjct: 363 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 178/343 (51%), Gaps = 22/343 (6%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 68 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 126
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F I
Sbjct: 127 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 185
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 186 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 245
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327
H + + +R S N SSRSH + L E E + +NL+DLAG
Sbjct: 246 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL--ELIGRHAEKQEISVGSINLVDLAG 303
Query: 328 SESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 387
SES KT T R E IN+SL L VI L + K H+PYR+SKLT LL SL G+
Sbjct: 304 SESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNS 359
Query: 388 HVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 429
+ V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 360 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 402
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 177/336 (52%), Gaps = 20/336 (5%)
Query: 98 SGDSISVTIRFRPLSEREFQRGDE----IAWYADGDKIVRNEY-NPATAYAFDRVFGPHA 152
S +I V R RP++ +E G E + + AD D I+ + ++ D+VF P A
Sbjct: 2 SKGNIRVIARVRPVT-KEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQA 60
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ Q+V+ + +V + ++G N +FAYG T +GKT+TM G +PGI A++ +FS +
Sbjct: 61 SQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEV 119
Query: 213 QDTPG-REFLLRVSYLEIYNEVINDLLDPTGQN---LRVREDAQG-TYVEGIKEEVVLSP 267
Q+ E+ + VS EIYNEV+ DLL Q +R+ D G YV G+ E V S
Sbjct: 120 QEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSV 179
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGVIFSQLNLIDL 325
G +R N N SSRSH + + + D G G +LNL+DL
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTG----KLNLVDL 235
Query: 326 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLS 384
AGSE K+ G R +E +INKSL LG VI L + HVP+R+SKLT LLQ SLS
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTYLLQDSLS 294
Query: 385 GHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEI 420
G ++ V+P + ET +LKFA R + VE+
Sbjct: 295 GDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 178/343 (51%), Gaps = 22/343 (6%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 54 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 112
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F I
Sbjct: 113 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 171
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 172 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 231
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327
H + + +R S N SSRSH + L E E + +NL+DLAG
Sbjct: 232 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL--ELIGRHAEKQEISVGSINLVDLAG 289
Query: 328 SESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 387
SES KT T R E IN+SL L VI L + K H+PYR+SKLT LL SL G+
Sbjct: 290 SESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNS 345
Query: 388 HVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 429
+ V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 346 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 388
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 180/340 (52%), Gaps = 33/340 (9%)
Query: 102 ISVTIRFRPLSEREFQRGD----------EIAWYADGDKIVRNEYNPATAYAFDRVFGPH 151
I V +R RPL+++E + + + + K+ +Y A+ FD F
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-----QN-SPGIIPLAI 205
A+++ VY ARP+V+ EG T FAYG T SGKTHTM GD QN S GI +A
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172
Query: 206 KDVFSIIQDTPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKE 261
+DVF ++++ P L + V++ EIYN + DLL+ + LRV ED Q V G++E
Sbjct: 173 RDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQE 230
Query: 262 EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLN 321
+V S + I G R G N SSRSH F +++ + G + + +
Sbjct: 231 HLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-------GRMHGKFS 283
Query: 322 LIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLL 379
L+DLAG+E ++ R R EG+ INKSLL L I L + KA H P+R+SKLT++L
Sbjct: 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVL 342
Query: 380 QSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ S G + +I T++P SS E T NTL++A R K +
Sbjct: 343 RDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 33/340 (9%)
Query: 102 ISVTIRFRPLSEREFQRGD----------EIAWYADGDKIVRNEYNPATAYAFDRVFGPH 151
I V +R RPL+++E + + + + K+ +Y A+ FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 152 ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD-----QN-SPGIIPLAI 205
A+++ VY ARP+V+ EG T FAYG T SGKTHTM GD QN S GI +A
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 206 KDVFSIIQDTPGREFL---LRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGTYVEGIKE 261
+DVF ++++ P L + V++ EIYN + DLL+ + LRV ED+ Q V G++E
Sbjct: 121 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQE 178
Query: 262 EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLN 321
+V + I G R G N SSRSH F +++ + G + + +
Sbjct: 179 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-------GRLHGKFS 231
Query: 322 LIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLL 379
L+DLAG+E ++ R R EG+ INKSLL L I L + KA H P+R+SKLT++L
Sbjct: 232 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVL 290
Query: 380 QSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418
+ S G + +I ++P SS E T NTL++A R K +
Sbjct: 291 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 135/235 (57%), Gaps = 11/235 (4%)
Query: 101 SISVTIRFRPLSEREFQRGDE-IAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYD 159
SI V RFRPL+E E RGD+ I + + +V + P Y FDRV P+ ++VY+
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQGKP---YVFDRVLPPNTTQEQVYN 63
Query: 160 VAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSP---GIIPLAIKDVFSIIQDT- 215
A+ +VK +EG NGT+FAYG TSSGKTHTM G + P GIIP D+F I
Sbjct: 64 ACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMD 123
Query: 216 PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGT-YVEGIKEEVVLSPGHALSFI 274
EF ++VSY EIY + I DLLD + NL V ED YV+G E V SP + I
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVI 183
Query: 275 AAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329
G+ +RHV N N SSRSH+IF + I+ + E + + +L L+DLAGSE
Sbjct: 184 DEGKANRHVAVTNMNEHSSRSHSIFLINIKQEN--VETEKKLSGKLYLVDLAGSE 236
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 177/343 (51%), Gaps = 22/343 (6%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 57 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG T SGKT+TM G S G+IP + +F I
Sbjct: 116 SQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327
H + + +R S N SSRSH + L E E + +NL+DLAG
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL--ELIGRHAEKQEISVGSINLVDLAG 292
Query: 328 SESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 387
SES KT T R E I +SL L VI L + K H+PYR+SKLT LL SL G+
Sbjct: 293 SESPKTST---RMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNS 348
Query: 388 HVSLICTVTPASSSMEETHNTLKFASRAKRVEIY-ASRNKIID 429
+ V+P +E+ +L+FA+ ++ A RN+ ++
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 391
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 113/326 (34%), Positives = 170/326 (52%), Gaps = 21/326 (6%)
Query: 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATA--------YAFDRVFGPHA 152
+I V R RP E E R W + V + A A ++FD+VF P +
Sbjct: 57 NIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 115
Query: 153 NSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSII 212
+ +++++ + P++++A++G N +FAYG + SGKT+TM G S G+IP + +F I
Sbjct: 116 SQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSI 174
Query: 213 QD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR---EDAQGTYVEGIKEEVVLSP 267
+ G E+ ++ ++LEIYNEV+ DLL +++ +R + YV I EE VL P
Sbjct: 175 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 234
Query: 268 GHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327
H + + +R S N SSRSH + L E E + +NL+DLAG
Sbjct: 235 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL--ELIGRHAEKQEISVGSINLVDLAG 292
Query: 328 SESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 387
SES KT T R E IN+SL L VI L + K H+PYR+SKLT LL SL G+
Sbjct: 293 SESPKTST---RMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNS 348
Query: 388 HVSLICTVTPASSSMEETHNTLKFAS 413
+ V+P +E+ +L+FA+
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 123/350 (35%), Positives = 180/350 (51%), Gaps = 36/350 (10%)
Query: 89 AEPLDAPQRSGDSISVTIRFRPLSEREFQRGD-EIAWYADGDKIVRNE---------YNP 138
A+P+D + I V +R RPL+++E Q D ++ D ++ +E Y
Sbjct: 83 ADPIDEHR-----ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLE 137
Query: 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN-- 196
+ FD F A ++ VY ARP+V+ E T FAYG T SGKTHTM GD +
Sbjct: 138 NQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGK 197
Query: 197 ----SPGIIPLAIKDVFSIIQDTPGREFLLRV--SYLEIYNEVINDLLDPTGQNLRVRED 250
S GI LA +DVF +++ ++ L+V ++ EIY+ + DLL+ + LRV ED
Sbjct: 198 NQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLED 256
Query: 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG 309
Q V G++E V L I G R G + N SSRSH +F +++
Sbjct: 257 GKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK--- 313
Query: 310 DEYDGVIFSQLNLIDLAGSESSKTETTGLR--RKEGSYINKSLLTLGTVIGKLSEGKASH 367
G + + +LIDLAG+E ++ R R EG+ INKSLL L I L K H
Sbjct: 314 ----GKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKP-H 368
Query: 368 VPYRDSKLTRLLQSSLSG-HGHVSLICTVTPASSSMEETHNTLKFASRAK 416
P+R SKLT++L+ S G + +I T++P +S E T NTL++A+R K
Sbjct: 369 TPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 161/291 (55%), Gaps = 21/291 (7%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGII 201
+ FD++F ++ V++ ++ +++ +++G N VFAYG T SGKT TM N G+I
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTN--GMI 488
Query: 202 PLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDP-----TGQNLRVREDAQGT 254
PL++K +F+ I++ G + +R ++EIYNE I DLL+P T ++ + A T
Sbjct: 489 PLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKT 548
Query: 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314
V + + SP A++ + + R + N SSRSH+IF + ++ Y+
Sbjct: 549 TVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG------YNS 602
Query: 315 VI----FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVP 369
+ + LNLIDLAGSE + + G R KE INKSL LG VI L+ SHVP
Sbjct: 603 LTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVP 662
Query: 370 YRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEI 420
YR+SKLT LL+ SL G+ + ++P + + ET N+L+FA++ I
Sbjct: 663 YRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 163/301 (54%), Gaps = 31/301 (10%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM--HGDQNSPG 199
+ FD++F + E++ + +++++++G N +FAYG T SGKT+TM GD G
Sbjct: 76 FKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD----G 130
Query: 200 IIPLAIKDVFSIIQDTPGREFLLRVS--YLEIYNEVINDLL---DPTGQN---------- 244
I+P I +FS I R + +VS ++EIYNE I DLL P+ +N
Sbjct: 131 IVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHE 190
Query: 245 LRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIE 304
+R ++ + TY+ I V+ S + + R S N SSRSH+IF + +E
Sbjct: 191 IRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLE 250
Query: 305 SSDHG--DEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLS 361
+ G ++ G+ LNL+DLAGSE + + G R +E INKSL LG VI L+
Sbjct: 251 GKNEGTGEKSQGI----LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALN 306
Query: 362 --EGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 419
+G+ H+P+R+SKLT LLQ SL G + ++PA+ + ET N+L+FAS+ +
Sbjct: 307 SPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
Query: 420 I 420
+
Sbjct: 367 M 367
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 156/301 (51%), Gaps = 31/301 (10%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM--HGDQNSPG 199
+ FD +F P ++E+++ R +V+++++G N +FAYG T SGKT+TM GD G
Sbjct: 55 FQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD----G 109
Query: 200 IIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLL-------------DPTGQN 244
+IP+ + +F + G + + Y+EIYNE I DLL D +
Sbjct: 110 MIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHD 169
Query: 245 LRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIE 304
+R + QGTY+ + + S + + + R + N SSRSH++F + I
Sbjct: 170 IRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN 229
Query: 305 SSD--HGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLS 361
+ G+ G +LNL+DLAGSE + + TG R +E INKSL LG VI L+
Sbjct: 230 GRNLHTGETSQG----KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALN 285
Query: 362 EGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVE 419
A ++P+R+SKLT LLQ SL G + + P + + ET N+L+FAS+ +
Sbjct: 286 TPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTK 345
Query: 420 I 420
I
Sbjct: 346 I 346
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/310 (37%), Positives = 162/310 (52%), Gaps = 45/310 (14%)
Query: 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG---- 193
P ++FDRVF P + EV++ A +V++A++G +FAYG T SGKT TM G
Sbjct: 81 PRHDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 194 DQNSPGIIPLAIKDVFSIIQDTPGR--EFLLRVSYLEIYNEVINDLL-----DPTGQNLR 246
D G+IP A++ +FS+ Q+ G+ + SY+EIYNE + DLL G
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 247 VREDAQGT---------YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
+R G+ YV E+ V AL +A ++R V N SSRSH+
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEV----DALLHLA--RQNRAVARTAQNERSSRSHS 253
Query: 298 IFTLMI--ESSDHGDEYDGVIFSQLNLIDLAGSESSKTETTGL--------RRKEGSYIN 347
+F L I E S G + + L+L+DLAGSE GL R +E IN
Sbjct: 254 VFQLQISGEHSSRGLQCG----APLSLVDLAGSERLDP---GLALGPGERERLRETQAIN 306
Query: 348 KSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHN 407
SL TLG VI LS K SHVPYR+SKLT LLQ+SL G + + ++P ++ E+ N
Sbjct: 307 SSLSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLN 365
Query: 408 TLKFASRAKR 417
+L+FAS+ +
Sbjct: 366 SLRFASKVNQ 375
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/301 (32%), Positives = 152/301 (50%), Gaps = 43/301 (14%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 110 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD----G 164
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------VR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 165 IIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 224
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 225 HDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 275
Query: 298 IFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 356
IF + + S+ + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 276 IFIIHLSGSNAKTGAHS--YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDV 333
Query: 357 IGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASR 414
I L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS + ET N+L+FAS+
Sbjct: 334 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
Query: 415 A 415
Sbjct: 394 V 394
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 156/310 (50%), Gaps = 43/310 (13%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 119
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 230
Query: 298 IFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 356
IF + + S+ + + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 231 IFIIHLSGSN--AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDV 288
Query: 357 IGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASR 414
I L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS + ET N+L+FAS+
Sbjct: 289 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
Query: 415 AKRVEIYASR 424
+ + +
Sbjct: 349 VNSTRLVSRK 358
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 156/310 (50%), Gaps = 43/310 (13%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 53 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 107
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 108 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 167
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 168 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 218
Query: 298 IFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 356
IF + + S+ + + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 219 IFIIHLSGSN--AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDV 276
Query: 357 IGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASR 414
I L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS + ET N+L+FAS+
Sbjct: 277 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
Query: 415 AKRVEIYASR 424
+ + +
Sbjct: 337 VNSTRLVSRK 346
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 43/310 (13%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 108
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQN---------LRVR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 219
Query: 298 IFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 356
IF + + S+ + + LNL+DLAGSE + ++ G R +E I KSL LG V
Sbjct: 220 IFIIHLSGSN--AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDV 277
Query: 357 IGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASR 414
I L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS + ET N+L+FAS+
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 415 AKRVEIYASR 424
+ + +
Sbjct: 338 VNSTRLVSRK 347
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 43/310 (13%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 108
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------VR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SSRSH+
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSRSHS 219
Query: 298 IFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 356
IF + + S+ + + LNL+DLAGS + ++ G R +E INKSL LG V
Sbjct: 220 IFIIHLSGSN--AKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDV 277
Query: 357 IGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASR 414
I L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS + ET N+L+FAS+
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 415 AKRVEIYASR 424
+ + +
Sbjct: 338 VNSTRLVSRK 347
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 154/310 (49%), Gaps = 36/310 (11%)
Query: 125 YADGDKIV--RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGV 182
++DG ++ +NE++ FD F + E+Y P+V +EG T AYG
Sbjct: 50 WSDGKSLIVDQNEFH------FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQ 103
Query: 183 TSSGKTHTMHGDQNSPG--------IIPLAIKDVFSII---QDTPGREFLLRVSYLEIYN 231
T +GK+++M PG I+P A+ D+F + Q+ + S++EIYN
Sbjct: 104 TGTGKSYSM--GMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYN 161
Query: 232 EVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLL 291
E DLL T V Q + + L H L G +R V N N
Sbjct: 162 EKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSN 216
Query: 292 SSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSL 350
SSRSH I T+ ++S H S++N++DLAGSE +T G+ R+EG IN L
Sbjct: 217 SSRSHAIVTIHVKSKTH--------HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268
Query: 351 LTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410
L++ V+ ++ G +PYRDS LT +LQ+SL+ +++ + ++P + ET +TL+
Sbjct: 269 LSINKVVMSMAAGHTV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLR 327
Query: 411 FASRAKRVEI 420
F + AK++ +
Sbjct: 328 FGTSAKKLRL 337
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 133 bits (335), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 43/310 (13%)
Query: 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH--GDQNSPG 199
+ FD++F + +V+ + +V+++++G N +FAYG T SGKT TM GD G
Sbjct: 54 FKFDKIFDQQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD----G 108
Query: 200 IIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTGQNLR---------VR 248
IIP I +F+ I T G ++ + ++EIYNE I DLL N +R
Sbjct: 109 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 249 EDAQGTYVEGIKE-----------EVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHT 297
D + E++L + L A+ + H SS SH+
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEH---------SSASHS 219
Query: 298 IFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTV 356
IF + + S+ + + LNL+DLAGSE + ++ G R +E INKSL LG V
Sbjct: 220 IFIIHLSGSN--AKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDV 277
Query: 357 IGKLSEGKAS--HVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASR 414
I L + ++ H+P+R+SKLT LLQ SL+G + ++P+SS + ET N+L+FAS+
Sbjct: 278 IHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Query: 415 AKRVEIYASR 424
+ + +
Sbjct: 338 VNSTRLVSRK 347
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 151/306 (49%), Gaps = 36/306 (11%)
Query: 125 YADGDKIV--RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGV 182
++DG ++ +NE++ FD F + E+Y P+V +EG T AYG
Sbjct: 50 WSDGKSLIVDQNEFH------FDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQ 103
Query: 183 TSSGKTHTMHGDQNSPG--------IIPLAIKDVFSII---QDTPGREFLLRVSYLEIYN 231
T +GK+++M PG I+P A+ D+F + Q+ + S++EIYN
Sbjct: 104 TGTGKSYSM--GMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYN 161
Query: 232 EVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLL 291
E DLL T V Q + + L H L G +R V N N
Sbjct: 162 EKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLH--HILEL---GTRNRRVRPTNMNSN 216
Query: 292 SSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSL 350
SSRSH I T+ ++S H S++N++DLAGSE +T G+ R+EG IN L
Sbjct: 217 SSRSHAIVTIHVKSKTH--------HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268
Query: 351 LTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410
L++ V+ ++ G +PYRDS LT +LQ+SL+ +++ + ++P + ET +TL+
Sbjct: 269 LSINKVVMSMAAGHTV-IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLR 327
Query: 411 FASRAK 416
F + AK
Sbjct: 328 FGTSAK 333
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 161/338 (47%), Gaps = 33/338 (9%)
Query: 102 ISVTIRFRPLSEREFQRGD--------EIAWYADGD--KIVRNEYNPATAYAFDRVFGPH 151
I V +R RPLSE E ++ D Y D K+ +Y + D+VF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 152 ANSQEVYDVAARPVVKAAME-GVNGTVFAYGVTSSGKTHTMHGDQ-----NSPGIIPLAI 205
++ VY+ +P++ E G + FAYG T SGKT+TM G Q ++PGI A
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 206 KDVFSIIQ-----DTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIK 260
D+F+ + +T G + +S+ EIY + DLL + + V+ +K
Sbjct: 122 GDIFTFLNIYDKDNTKG----IFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLK 177
Query: 261 EEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQL 320
VL+ + + G R +G N+ N SSRSH I + D D ++
Sbjct: 178 ILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNI-----DLKDINKNTSLGKI 232
Query: 321 NLIDLAGSESSKTETTGLRRKE--GSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRL 378
IDLAGSE + ++ + G+ IN+SLL L I + K +H+P+RDS+LT++
Sbjct: 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKV 291
Query: 379 LQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416
L+ G +I ++P S E+T NTL+++SR K
Sbjct: 292 LRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 52/80 (65%)
Query: 346 INKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405
INKSL LG VI L+EG +HVPYRDSK+TR+LQ SL G+ +++ +P+ + ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 406 HNTLKFASRAKRVEIYASRN 425
+TL F RAK ++ S N
Sbjct: 64 KSTLMFGQRAKTIKNTVSVN 83
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 347 NKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406
NKSL LG VI L+EG +HVPYRDSK+TR+LQ SL G+ +++ +P+ + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 407 NTLKFASRAKRVEIYASRN 425
+TL F RAK ++ S N
Sbjct: 61 STLMFGQRAKTIKNTVSVN 79
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 1054 CKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099
CKVC + + + +PC H +CK C+ + +CPICR+ I + F
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap
Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIS 1093
+CK+C + A + +PC H CK C+ A +CP+C T I+
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 67
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIS 1093
+CK+C + A + +PC H CK C+ A +CP+C T I+
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 66
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKIS 1093
+CK+C + A + +PC H CK C+ A +CP+C T I+
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVIT 66
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 1054 CKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099
CKVC + + + +PC H +C+ C+ + +CPICR I + F
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1054 CKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099
CKVC + + + +PC H +C C+ CPICR + R+ F
Sbjct: 16 CKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTF 60
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation
Of The Ldl Receptor
Length = 79
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKI 1092
+C VC E + PC H C+SC+ CP+CR+++
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRV 59
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRL 1096
NS C VC +LLPCRH CLC C +CP+CR + +
Sbjct: 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESF 60
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 36.6 bits (83), Expect = 0.088, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC A E CP CR +I
Sbjct: 27 QLCKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC A E CP CR +I
Sbjct: 340 LCKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 25 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 1045 GNGDPNSHM--CKVCFESPTAAILLPCRH-FC-LC-KSCSLACSECPICRTKISD 1094
GN P+ + C +C ++ + LPC+H FC LC K S C +CR +I +
Sbjct: 7 GNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 28 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 335 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 335 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSE-----CPICRTKI 1092
+CK+C E+ + PC H +C SC + E CP CR +I
Sbjct: 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 1030 KARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACS------ 1083
K +MQ KE+ + + N C +C E A+ L C H CS +
Sbjct: 32 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH----SFCSYCINEWMKRK 87
Query: 1084 -ECPICRTKISDRLFAFT 1100
ECPICR I + ++
Sbjct: 88 IECPICRKDIKSKTYSLV 105
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER
Length = 149
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 1030 KARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACS------ 1083
K +MQ KE+ + + N C +C E A+ L C H CS +
Sbjct: 43 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH----SFCSYCINEWMKRK 98
Query: 1084 -ECPICRTKISDRLFAFT 1100
ECPICR I + ++
Sbjct: 99 IECPICRKDIKSKTYSLV 116
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 1030 KARMQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACS------ 1083
K +MQ KE+ + + N C +C E A+ L C H CS +
Sbjct: 32 KEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH----SFCSYCINEWMKRK 87
Query: 1084 -ECPICRTKISDRLFAFT 1100
ECPICR I + ++
Sbjct: 88 IECPICRKDIKSKTYSLV 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,864,956
Number of Sequences: 62578
Number of extensions: 1149007
Number of successful extensions: 2985
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2636
Number of HSP's gapped (non-prelim): 110
length of query: 1100
length of database: 14,973,337
effective HSP length: 109
effective length of query: 991
effective length of database: 8,152,335
effective search space: 8078963985
effective search space used: 8078963985
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)