Query 001324
Match_columns 1100
No_of_seqs 738 out of 3552
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 21:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 5.6E-89 1.2E-93 820.3 73.8 400 96-501 45-469 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 2.5E-90 5.4E-95 813.0 30.6 379 99-478 3-414 (1221)
3 PLN03188 kinesin-12 family pro 100.0 1.7E-82 3.7E-87 769.5 81.0 356 91-454 89-468 (1320)
4 KOG4280 Kinesin-like protein [ 100.0 1.2E-88 2.7E-93 789.3 25.7 355 98-453 3-370 (574)
5 KOG0242 Kinesin-like protein [ 100.0 5.4E-85 1.2E-89 790.2 32.5 354 99-455 5-368 (675)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 1.5E-84 3.3E-89 732.1 31.4 356 98-455 5-378 (607)
7 KOG0241 Kinesin-like protein [ 100.0 5.7E-82 1.2E-86 726.1 32.7 352 99-451 3-383 (1714)
8 cd01373 KISc_KLP2_like Kinesin 100.0 4.9E-79 1.1E-83 697.4 35.1 318 100-418 1-337 (337)
9 cd01370 KISc_KIP3_like Kinesin 100.0 4.5E-78 9.7E-83 689.7 35.3 318 101-418 1-338 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 5.1E-76 1.1E-80 674.1 34.7 312 100-416 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.5E-75 3.2E-80 674.5 36.9 326 100-425 1-356 (356)
12 cd01371 KISc_KIF3 Kinesin moto 100.0 6.6E-74 1.4E-78 655.0 36.2 319 100-418 1-333 (333)
13 cd01374 KISc_CENP_E Kinesin mo 100.0 6.8E-74 1.5E-78 652.6 35.8 317 101-418 1-321 (321)
14 cd01367 KISc_KIF2_like Kinesin 100.0 3.5E-74 7.7E-79 653.9 33.4 309 100-416 1-322 (322)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.8E-73 3.8E-78 657.1 35.8 325 100-426 2-351 (352)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.5E-73 1.2E-77 646.5 35.8 317 100-418 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 1.2E-72 2.6E-77 641.0 34.8 309 101-416 1-319 (319)
18 cd01375 KISc_KIF9_like Kinesin 100.0 3E-72 6.5E-77 641.2 34.8 312 101-416 1-334 (334)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 5.1E-72 1.1E-76 643.0 35.2 316 101-419 2-341 (341)
20 cd01366 KISc_C_terminal Kinesi 100.0 2.9E-70 6.2E-75 625.5 36.3 318 99-420 1-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 6.7E-69 1.5E-73 616.2 36.8 325 101-425 1-335 (335)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 1.7E-70 3.7E-75 661.0 23.8 325 97-425 311-647 (670)
23 cd00106 KISc Kinesin motor dom 100.0 2.1E-67 4.5E-72 602.5 36.5 315 101-416 1-328 (328)
24 KOG0246 Kinesin-like protein [ 100.0 4.6E-68 1E-72 595.3 28.1 320 97-423 205-546 (676)
25 PF00225 Kinesin: Kinesin moto 100.0 2.5E-68 5.3E-73 612.0 24.3 312 107-418 1-335 (335)
26 KOG0244 Kinesin-like protein [ 100.0 1.3E-65 2.8E-70 609.1 44.0 339 108-452 1-350 (913)
27 KOG0247 Kinesin-like protein [ 100.0 1.4E-66 3.1E-71 599.2 31.3 330 95-426 26-444 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-60 2.7E-65 574.6 27.5 323 97-427 19-345 (568)
29 cd01363 Motor_domain Myosin an 100.0 4.4E-48 9.4E-53 406.6 18.3 177 157-397 8-186 (186)
30 KOG0161 Myosin class II heavy 100.0 6.5E-28 1.4E-32 311.9 26.5 445 433-957 1344-1868(1930)
31 PF01576 Myosin_tail_1: Myosin 99.9 1.4E-27 3.1E-32 301.0 0.0 439 432-957 285-810 (859)
32 KOG0978 E3 ubiquitin ligase in 99.6 6.5E-13 1.4E-17 158.8 34.0 86 760-845 438-523 (698)
33 KOG4265 Predicted E3 ubiquitin 99.2 8.9E-13 1.9E-17 145.1 -1.8 82 1018-1099 253-342 (349)
34 KOG4172 Predicted E3 ubiquitin 99.1 6.2E-12 1.3E-16 99.7 -3.6 49 1052-1100 8-61 (62)
35 KOG0612 Rho-associated, coiled 99.0 1.9E-07 4.1E-12 115.9 30.6 91 849-943 707-804 (1317)
36 KOG0977 Nuclear envelope prote 99.0 2.6E-08 5.6E-13 117.3 21.6 275 607-913 55-379 (546)
37 KOG4275 Predicted E3 ubiquitin 98.9 3.1E-10 6.6E-15 120.4 -0.2 50 1051-1100 300-349 (350)
38 KOG0161 Myosin class II heavy 98.8 2.7E-05 5.9E-10 104.0 43.5 258 601-871 1196-1463(1930)
39 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.1E-09 2.3E-14 89.8 1.3 44 1052-1095 3-50 (50)
40 KOG1571 Predicted E3 ubiquitin 98.7 2.5E-09 5.4E-14 118.2 1.0 53 1048-1100 302-354 (355)
41 TIGR02168 SMC_prok_B chromosom 98.7 5.8E-06 1.3E-10 111.1 32.3 59 899-957 967-1025(1179)
42 PF00038 Filament: Intermediat 98.7 9.5E-06 2.1E-10 92.8 29.2 260 607-915 17-301 (312)
43 PRK02224 chromosome segregatio 98.7 0.00024 5.3E-09 92.7 45.6 128 605-740 318-446 (880)
44 KOG0971 Microtubule-associated 98.7 7.6E-05 1.6E-09 90.2 36.2 88 605-699 228-315 (1243)
45 PF07888 CALCOCO1: Calcium bin 98.7 0.00014 3E-09 86.5 38.2 201 606-817 141-345 (546)
46 TIGR02169 SMC_prok_A chromosom 98.5 4.8E-05 1E-09 102.3 34.0 14 178-191 27-40 (1164)
47 COG1196 Smc Chromosome segrega 98.5 7.6E-05 1.6E-09 99.6 35.3 36 922-957 974-1009(1163)
48 TIGR02169 SMC_prok_A chromosom 98.5 4.6E-05 9.9E-10 102.5 33.7 12 370-381 55-66 (1164)
49 TIGR02168 SMC_prok_B chromosom 98.5 4.9E-05 1.1E-09 102.2 33.4 57 892-952 967-1027(1179)
50 PF10174 Cast: RIM-binding pro 98.5 0.00067 1.4E-08 84.9 38.7 235 603-845 109-363 (775)
51 PRK02224 chromosome segregatio 98.5 0.00074 1.6E-08 88.3 41.3 227 601-837 162-396 (880)
52 KOG0976 Rho/Rac1-interacting s 98.5 0.00029 6.4E-09 84.1 32.2 47 778-824 265-311 (1265)
53 KOG1100 Predicted E3 ubiquitin 98.4 9.5E-08 2.1E-12 101.4 2.6 47 1053-1099 160-206 (207)
54 PF07888 CALCOCO1: Calcium bin 98.4 0.0016 3.4E-08 77.7 37.2 94 808-941 361-454 (546)
55 KOG4674 Uncharacterized conser 98.3 0.0092 2E-07 79.4 45.4 135 601-742 997-1135(1822)
56 KOG0933 Structural maintenance 98.3 0.0015 3.3E-08 80.7 35.6 76 879-954 947-1023(1174)
57 PF12128 DUF3584: Protein of u 98.3 0.0021 4.6E-08 86.2 39.0 68 767-834 605-672 (1201)
58 PF10174 Cast: RIM-binding pro 98.3 0.0026 5.5E-08 79.8 36.9 159 602-777 232-407 (775)
59 COG1196 Smc Chromosome segrega 98.3 0.00062 1.3E-08 91.1 33.4 25 164-191 17-41 (1163)
60 KOG4643 Uncharacterized coiled 98.2 0.0022 4.9E-08 79.1 34.1 58 785-842 403-460 (1195)
61 KOG0823 Predicted E3 ubiquitin 98.2 4.5E-07 9.7E-12 95.1 2.6 51 1048-1099 44-103 (230)
62 TIGR00606 rad50 rad50. This fa 98.2 0.0016 3.4E-08 88.3 36.5 93 675-767 745-841 (1311)
63 KOG0976 Rho/Rac1-interacting s 98.2 0.0039 8.5E-08 74.9 34.0 55 612-666 117-174 (1265)
64 PF01576 Myosin_tail_1: Myosin 98.2 2.7E-07 5.9E-12 117.9 0.0 80 755-834 426-505 (859)
65 TIGR00606 rad50 rad50. This fa 98.2 0.00068 1.5E-08 91.8 32.1 33 924-956 1060-1092(1311)
66 KOG0971 Microtubule-associated 98.2 0.0047 1E-07 75.4 34.1 152 787-957 372-543 (1243)
67 KOG0994 Extracellular matrix g 98.2 0.0026 5.7E-08 79.0 32.3 65 404-478 1176-1241(1758)
68 PF15070 GOLGA2L5: Putative go 98.2 0.028 6.2E-07 69.4 42.0 224 601-835 87-310 (617)
69 KOG0996 Structural maintenance 98.2 0.009 1.9E-07 75.4 37.1 197 642-842 829-1029(1293)
70 KOG0964 Structural maintenance 98.1 0.022 4.8E-07 70.6 38.8 94 755-848 671-764 (1200)
71 PF12128 DUF3584: Protein of u 98.1 0.013 2.7E-07 78.9 41.1 16 176-191 19-34 (1201)
72 PF00261 Tropomyosin: Tropomyo 98.0 0.0051 1.1E-07 67.6 28.9 191 642-846 31-225 (237)
73 PLN03208 E3 ubiquitin-protein 98.0 1.5E-06 3.3E-11 89.7 1.1 49 1050-1099 17-87 (193)
74 PF00038 Filament: Intermediat 98.0 0.048 1E-06 62.5 37.6 135 601-777 4-139 (312)
75 KOG4673 Transcription factor T 98.0 0.065 1.4E-06 64.1 38.1 156 676-833 404-566 (961)
76 KOG4643 Uncharacterized coiled 98.0 0.0064 1.4E-07 75.3 30.8 68 723-795 274-341 (1195)
77 KOG4673 Transcription factor T 98.0 0.05 1.1E-06 65.0 36.2 139 681-826 474-634 (961)
78 KOG0612 Rho-associated, coiled 97.9 0.0046 1E-07 78.2 29.3 23 170-192 84-106 (1317)
79 KOG0933 Structural maintenance 97.9 0.0077 1.7E-07 74.8 29.6 88 610-698 679-772 (1174)
80 KOG0317 Predicted E3 ubiquitin 97.9 3.6E-06 7.8E-11 90.8 1.0 48 1048-1096 236-287 (293)
81 KOG0250 DNA repair protein RAD 97.9 0.0039 8.5E-08 78.5 27.2 164 679-846 272-450 (1074)
82 KOG4674 Uncharacterized conser 97.9 0.024 5.1E-07 75.7 35.1 33 925-957 1053-1085(1822)
83 PRK11637 AmiB activator; Provi 97.9 0.0023 4.9E-08 76.6 24.3 17 606-622 45-61 (428)
84 KOG0995 Centromere-associated 97.8 0.075 1.6E-06 63.2 35.2 121 607-740 227-359 (581)
85 PRK03918 chromosome segregatio 97.8 0.036 7.7E-07 72.7 37.1 14 178-191 27-40 (880)
86 PF05701 WEMBL: Weak chloropla 97.8 0.061 1.3E-06 65.9 36.3 33 602-634 117-149 (522)
87 PRK11281 hypothetical protein; 97.8 0.032 6.9E-07 73.1 34.3 52 802-853 283-334 (1113)
88 COG1340 Uncharacterized archae 97.8 0.017 3.7E-07 63.9 27.1 221 609-845 17-241 (294)
89 KOG0996 Structural maintenance 97.8 0.029 6.3E-07 71.1 31.9 98 753-853 403-500 (1293)
90 PRK04778 septation ring format 97.8 0.071 1.5E-06 66.2 35.8 59 595-657 99-157 (569)
91 PRK03918 chromosome segregatio 97.8 0.12 2.6E-06 67.8 40.1 22 604-625 165-186 (880)
92 PF14662 CCDC155: Coiled-coil 97.8 0.033 7.2E-07 57.7 27.0 136 688-845 8-143 (193)
93 KOG0250 DNA repair protein RAD 97.8 0.0043 9.3E-08 78.2 24.6 182 641-839 282-464 (1074)
94 KOG0977 Nuclear envelope prote 97.7 0.0043 9.3E-08 74.1 23.5 31 925-955 349-379 (546)
95 PHA02562 46 endonuclease subun 97.7 0.0027 5.8E-08 78.8 22.5 59 678-740 224-282 (562)
96 PF15070 GOLGA2L5: Putative go 97.7 0.092 2E-06 65.0 35.0 78 719-797 159-237 (617)
97 PHA02562 46 endonuclease subun 97.7 0.024 5.2E-07 70.3 30.8 17 175-191 28-44 (562)
98 PF09726 Macoilin: Transmembra 97.7 0.029 6.2E-07 70.4 30.4 216 642-941 420-638 (697)
99 PF09730 BicD: Microtubule-ass 97.7 0.16 3.5E-06 63.3 36.3 56 902-957 417-472 (717)
100 PRK04863 mukB cell division pr 97.7 0.098 2.1E-06 70.8 36.9 46 897-942 558-603 (1486)
101 PRK04778 septation ring format 97.7 0.031 6.7E-07 69.3 30.4 64 891-955 442-506 (569)
102 PRK10929 putative mechanosensi 97.7 0.054 1.2E-06 70.9 33.3 54 800-853 261-314 (1109)
103 PRK04863 mukB cell division pr 97.6 0.045 9.8E-07 73.9 33.6 18 175-192 28-45 (1486)
104 PHA02929 N1R/p28-like protein; 97.6 2.5E-05 5.4E-10 84.4 2.6 47 1051-1098 174-232 (238)
105 COG5059 KIP1 Kinesin-like prot 97.6 8.9E-07 1.9E-11 108.3 -9.6 249 99-361 304-566 (568)
106 KOG0320 Predicted E3 ubiquitin 97.6 1.5E-05 3.2E-10 80.3 0.7 47 1052-1099 132-186 (187)
107 PF13923 zf-C3HC4_2: Zinc fing 97.6 1.7E-05 3.8E-10 61.3 0.9 34 1054-1088 1-39 (39)
108 PF14662 CCDC155: Coiled-coil 97.6 0.071 1.5E-06 55.3 27.0 146 678-845 5-150 (193)
109 KOG2164 Predicted E3 ubiquitin 97.6 1.9E-05 4E-10 91.5 1.2 43 1051-1094 186-237 (513)
110 PRK11637 AmiB activator; Provi 97.6 0.012 2.7E-07 70.3 25.2 52 785-836 200-251 (428)
111 PF00261 Tropomyosin: Tropomyo 97.6 0.01 2.3E-07 65.1 22.5 54 903-956 175-228 (237)
112 PF14634 zf-RING_5: zinc-RING 97.6 3E-05 6.5E-10 61.7 1.9 37 1053-1090 1-44 (44)
113 COG4372 Uncharacterized protei 97.6 0.054 1.2E-06 60.9 26.9 63 768-830 143-205 (499)
114 PF05483 SCP-1: Synaptonemal c 97.6 0.24 5.1E-06 59.9 33.7 172 760-957 469-647 (786)
115 PF05701 WEMBL: Weak chloropla 97.5 0.13 2.8E-06 63.1 33.2 17 434-450 36-52 (522)
116 KOG0963 Transcription factor/C 97.5 0.18 4E-06 60.5 32.7 54 788-841 219-272 (629)
117 COG4942 Membrane-bound metallo 97.5 0.26 5.5E-06 57.5 32.9 56 680-742 72-127 (420)
118 PF09726 Macoilin: Transmembra 97.5 0.063 1.4E-06 67.4 29.9 65 781-845 592-656 (697)
119 KOG0018 Structural maintenance 97.5 0.097 2.1E-06 66.1 30.7 187 595-787 154-342 (1141)
120 PF04849 HAP1_N: HAP1 N-termin 97.5 0.091 2E-06 58.8 27.7 88 755-845 160-247 (306)
121 KOG0994 Extracellular matrix g 97.4 0.048 1E-06 68.4 26.5 20 433-452 1233-1252(1758)
122 KOG1029 Endocytic adaptor prot 97.4 0.11 2.4E-06 62.9 28.6 15 198-212 44-58 (1118)
123 PF05483 SCP-1: Synaptonemal c 97.4 0.63 1.4E-05 56.4 34.4 32 925-956 732-763 (786)
124 COG1579 Zn-ribbon protein, pos 97.4 0.023 5E-07 61.5 20.9 50 892-941 91-140 (239)
125 PF09730 BicD: Microtubule-ass 97.4 0.82 1.8E-05 57.2 37.8 72 752-823 587-659 (717)
126 KOG0964 Structural maintenance 97.4 0.52 1.1E-05 59.1 34.1 12 180-191 31-42 (1200)
127 PF09789 DUF2353: Uncharacteri 97.3 0.26 5.6E-06 55.8 29.3 216 606-845 7-223 (319)
128 PHA02926 zinc finger-like prot 97.3 6.2E-05 1.4E-09 78.5 0.4 45 1052-1097 171-234 (242)
129 PF13639 zf-RING_2: Ring finge 97.3 7.3E-05 1.6E-09 59.4 0.7 36 1053-1089 2-44 (44)
130 KOG0999 Microtubule-associated 97.3 0.24 5.3E-06 58.1 28.7 36 679-714 41-76 (772)
131 KOG0963 Transcription factor/C 97.3 0.79 1.7E-05 55.3 36.0 57 901-957 380-436 (629)
132 PF05622 HOOK: HOOK protein; 97.2 7.1E-05 1.5E-09 94.9 0.0 97 635-738 327-423 (713)
133 COG4942 Membrane-bound metallo 97.2 0.2 4.3E-06 58.4 27.5 57 786-842 192-248 (420)
134 TIGR00599 rad18 DNA repair pro 97.2 0.00012 2.5E-09 84.9 1.5 43 1051-1094 26-72 (397)
135 PF06160 EzrA: Septation ring 97.2 0.68 1.5E-05 57.4 34.3 223 597-839 97-334 (560)
136 PRK01156 chromosome segregatio 97.2 1.7 3.8E-05 57.2 39.4 15 176-190 25-39 (895)
137 KOG0018 Structural maintenance 97.2 0.74 1.6E-05 58.6 33.0 50 719-777 780-829 (1141)
138 KOG0999 Microtubule-associated 97.1 0.93 2E-05 53.5 33.6 46 906-951 320-365 (772)
139 KOG0287 Postreplication repair 97.1 0.00012 2.6E-09 79.9 0.5 41 1053-1094 25-69 (442)
140 PRK01156 chromosome segregatio 97.1 1.5 3.1E-05 57.9 38.1 32 926-957 675-706 (895)
141 PF06160 EzrA: Septation ring 97.1 0.91 2E-05 56.3 33.9 64 757-820 273-336 (560)
142 COG5574 PEX10 RING-finger-cont 97.1 0.00016 3.4E-09 77.5 0.8 42 1051-1093 215-262 (271)
143 COG5432 RAD18 RING-finger-cont 97.1 0.00019 4.2E-09 76.8 1.2 42 1052-1094 26-71 (391)
144 KOG4593 Mitotic checkpoint pro 97.1 1.4 3E-05 54.0 36.3 30 925-954 600-629 (716)
145 PF14447 Prok-RING_4: Prokaryo 97.0 0.00028 6.1E-09 57.7 1.6 41 1053-1094 9-51 (55)
146 PF05557 MAD: Mitotic checkpoi 97.0 0.0005 1.1E-08 87.5 4.4 88 752-846 340-427 (722)
147 KOG1029 Endocytic adaptor prot 97.0 1 2.2E-05 55.1 30.9 15 161-175 73-87 (1118)
148 smart00184 RING Ring finger. E 97.0 0.00043 9.2E-09 52.4 2.2 34 1054-1088 1-39 (39)
149 PF15227 zf-C3HC4_4: zinc fing 97.0 0.00032 6.9E-09 55.2 1.4 34 1054-1088 1-42 (42)
150 cd00162 RING RING-finger (Real 97.0 0.00054 1.2E-08 53.8 2.6 39 1053-1092 1-45 (45)
151 KOG0980 Actin-binding protein 96.9 1.9 4.2E-05 53.9 33.3 54 604-657 329-382 (980)
152 KOG0978 E3 ubiquitin ligase in 96.9 0.24 5.3E-06 61.1 26.1 142 675-834 462-617 (698)
153 KOG1785 Tyrosine kinase negati 96.9 0.0003 6.4E-09 78.3 0.7 43 1053-1096 371-419 (563)
154 PF05557 MAD: Mitotic checkpoi 96.9 0.00025 5.4E-09 90.2 0.0 40 601-640 61-100 (722)
155 PF00097 zf-C3HC4: Zinc finger 96.9 0.00038 8.1E-09 54.4 0.9 34 1054-1088 1-41 (41)
156 PF05667 DUF812: Protein of un 96.8 0.66 1.4E-05 57.4 28.9 74 759-835 405-478 (594)
157 COG4372 Uncharacterized protei 96.8 0.81 1.8E-05 51.9 25.9 122 598-740 71-192 (499)
158 PF05622 HOOK: HOOK protein; 96.8 0.00035 7.6E-09 88.7 0.0 21 637-657 243-263 (713)
159 KOG0946 ER-Golgi vesicle-tethe 96.7 0.58 1.3E-05 57.7 26.5 35 678-712 682-716 (970)
160 KOG4692 Predicted E3 ubiquitin 96.7 0.00091 2E-08 73.5 2.7 45 1050-1095 421-469 (489)
161 smart00504 Ubox Modified RING 96.7 0.00084 1.8E-08 57.5 2.0 40 1053-1093 3-46 (63)
162 KOG0962 DNA repair protein RAD 96.7 2.1 4.6E-05 56.3 32.6 35 674-708 819-853 (1294)
163 PF15397 DUF4618: Domain of un 96.7 1.2 2.6E-05 49.0 26.2 102 601-714 6-107 (258)
164 KOG0946 ER-Golgi vesicle-tethe 96.5 0.49 1.1E-05 58.3 24.1 12 349-360 337-348 (970)
165 PF08826 DMPK_coil: DMPK coile 96.5 0.013 2.8E-07 49.7 7.9 49 904-952 1-59 (61)
166 COG1579 Zn-ribbon protein, pos 96.5 0.64 1.4E-05 50.6 22.6 39 676-714 33-71 (239)
167 COG1340 Uncharacterized archae 96.5 2 4.4E-05 48.0 27.9 80 635-714 64-150 (294)
168 KOG1003 Actin filament-coating 96.5 0.65 1.4E-05 48.3 21.2 154 641-840 33-187 (205)
169 COG0419 SbcC ATPase involved i 96.5 5.3 0.00012 52.7 35.7 26 174-199 25-57 (908)
170 PF06818 Fez1: Fez1; InterPro 96.5 0.23 5E-06 52.3 18.4 69 763-834 132-200 (202)
171 COG5540 RING-finger-containing 96.5 0.0014 3.1E-08 71.0 2.2 41 1052-1093 324-372 (374)
172 KOG0980 Actin-binding protein 96.4 3.9 8.5E-05 51.3 31.0 96 680-779 423-518 (980)
173 COG5185 HEC1 Protein involved 96.4 2.6 5.5E-05 49.2 27.5 104 600-706 294-400 (622)
174 PF13445 zf-RING_UBOX: RING-ty 96.4 0.0011 2.4E-08 52.3 0.6 27 1054-1082 1-31 (43)
175 PRK11281 hypothetical protein; 96.4 2.1 4.5E-05 56.8 30.3 96 673-778 120-215 (1113)
176 PF15619 Lebercilin: Ciliary p 96.4 1 2.2E-05 47.8 22.8 51 896-946 131-185 (194)
177 PF05667 DUF812: Protein of un 96.3 4.4 9.5E-05 50.3 32.8 35 808-842 495-529 (594)
178 PRK10929 putative mechanosensi 96.3 6.7 0.00015 52.0 34.6 50 788-837 263-312 (1109)
179 KOG0249 LAR-interacting protei 96.3 0.43 9.4E-06 57.8 21.4 216 638-863 54-279 (916)
180 PF15619 Lebercilin: Ciliary p 96.3 2 4.2E-05 45.7 24.5 91 678-778 51-141 (194)
181 PRK09039 hypothetical protein; 96.3 0.33 7.1E-06 56.3 20.4 75 752-826 113-187 (343)
182 COG5236 Uncharacterized conser 96.3 0.0022 4.8E-08 70.4 2.3 48 1048-1096 58-111 (493)
183 PF06785 UPF0242: Uncharacteri 96.1 0.52 1.1E-05 52.4 19.5 118 788-920 104-224 (401)
184 KOG0995 Centromere-associated 96.1 4.8 0.0001 48.5 37.5 109 603-714 261-372 (581)
185 PF09755 DUF2046: Uncharacteri 96.1 3.3 7.1E-05 46.6 28.3 98 678-778 139-245 (310)
186 COG5152 Uncharacterized conser 96.1 0.0015 3.3E-08 66.5 -0.0 54 1044-1098 189-246 (259)
187 PF14835 zf-RING_6: zf-RING of 96.0 0.0027 5.9E-08 53.7 1.3 39 1053-1092 9-50 (65)
188 PF04849 HAP1_N: HAP1 N-termin 96.0 3.2 7E-05 46.8 25.4 87 752-838 217-303 (306)
189 KOG4593 Mitotic checkpoint pro 96.0 6 0.00013 48.7 36.6 32 672-703 149-180 (716)
190 PRK09039 hypothetical protein; 96.0 0.22 4.7E-06 57.8 16.8 15 724-738 113-127 (343)
191 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 1.2 2.5E-05 44.5 19.6 125 676-835 5-129 (132)
192 PF14915 CCDC144C: CCDC144C pr 95.9 2.2 4.8E-05 47.4 22.9 106 609-714 32-156 (305)
193 PF15254 CCDC14: Coiled-coil d 95.8 1.7 3.7E-05 53.6 23.8 84 759-845 459-542 (861)
194 PLN02939 transferase, transfer 95.8 7.1 0.00015 50.7 30.4 147 640-813 128-280 (977)
195 PF12718 Tropomyosin_1: Tropom 95.8 0.36 7.8E-06 48.7 15.5 64 758-821 76-139 (143)
196 KOG1813 Predicted E3 ubiquitin 95.8 0.0033 7.2E-08 68.4 0.9 47 1049-1096 239-289 (313)
197 COG5185 HEC1 Protein involved 95.7 5.9 0.00013 46.3 28.3 100 608-714 264-363 (622)
198 KOG1853 LIS1-interacting prote 95.7 1.9 4E-05 46.4 20.5 50 810-863 132-181 (333)
199 KOG1850 Myosin-like coiled-coi 95.6 4.8 0.0001 44.9 29.3 66 650-716 112-178 (391)
200 KOG2177 Predicted E3 ubiquitin 95.6 0.0034 7.3E-08 70.9 0.4 40 1050-1090 12-55 (386)
201 PF12718 Tropomyosin_1: Tropom 95.6 0.24 5.3E-06 49.9 13.3 105 678-783 32-136 (143)
202 TIGR03185 DNA_S_dndD DNA sulfu 95.5 11 0.00024 47.9 33.5 16 176-191 30-45 (650)
203 COG5243 HRD1 HRD ubiquitin lig 95.4 0.01 2.2E-07 66.2 2.9 43 1049-1092 285-344 (491)
204 KOG1853 LIS1-interacting prote 95.3 5.3 0.00011 43.1 22.5 41 792-832 86-126 (333)
205 TIGR02680 conserved hypothetic 95.3 13 0.00029 51.1 32.4 17 176-192 26-42 (1353)
206 PF12678 zf-rbx1: RING-H2 zinc 95.3 0.0074 1.6E-07 53.6 1.1 36 1053-1089 21-73 (73)
207 PF08614 ATG16: Autophagy prot 95.3 0.2 4.4E-06 53.3 12.3 85 755-839 102-186 (194)
208 TIGR02680 conserved hypothetic 95.2 11 0.00023 52.0 30.9 37 678-714 337-373 (1353)
209 PF09787 Golgin_A5: Golgin sub 95.1 12 0.00025 46.2 33.1 60 598-657 106-172 (511)
210 KOG0249 LAR-interacting protei 95.1 3.2 6.9E-05 50.8 22.4 114 726-844 69-189 (916)
211 PF05010 TACC: Transforming ac 95.0 6.3 0.00014 42.3 25.9 153 638-817 28-181 (207)
212 KOG0979 Structural maintenance 95.0 16 0.00035 46.9 37.2 65 784-848 623-687 (1072)
213 PF15254 CCDC14: Coiled-coil d 94.8 8.1 0.00018 48.1 25.0 94 641-738 388-487 (861)
214 PF07111 HCR: Alpha helical co 94.8 14 0.00031 45.6 33.2 42 792-833 244-285 (739)
215 PF09728 Taxilin: Myosin-like 94.8 9.8 0.00021 43.6 29.7 52 678-729 111-162 (309)
216 KOG4628 Predicted E3 ubiquitin 94.8 0.013 2.9E-07 66.4 1.8 43 1052-1095 230-280 (348)
217 KOG1937 Uncharacterized conser 94.8 11 0.00024 44.0 32.2 78 762-840 345-425 (521)
218 PF04564 U-box: U-box domain; 94.7 0.017 3.7E-07 51.3 1.8 44 1050-1094 3-51 (73)
219 KOG4809 Rab6 GTPase-interactin 94.7 13 0.00029 44.4 28.1 10 294-303 150-159 (654)
220 PF13514 AAA_27: AAA domain 94.6 25 0.00054 47.6 37.7 12 1061-1072 1082-1093(1111)
221 PF09738 DUF2051: Double stran 94.6 3.4 7.4E-05 46.8 20.3 107 631-741 103-247 (302)
222 PF14988 DUF4515: Domain of un 94.6 7.7 0.00017 41.7 22.6 90 756-845 79-183 (206)
223 KOG4159 Predicted E3 ubiquitin 94.6 0.019 4E-07 67.0 2.3 45 1049-1094 82-130 (398)
224 KOG4809 Rab6 GTPase-interactin 94.4 8.1 0.00018 46.1 22.9 33 682-714 374-406 (654)
225 PF08317 Spc7: Spc7 kinetochor 94.4 3.5 7.6E-05 47.6 20.4 79 760-838 154-236 (325)
226 smart00787 Spc7 Spc7 kinetocho 94.4 4 8.6E-05 46.7 20.4 35 600-634 62-96 (312)
227 PF10473 CENP-F_leu_zip: Leuci 94.3 6.5 0.00014 39.5 19.6 85 761-845 16-100 (140)
228 COG0556 UvrB Helicase subunit 94.2 0.093 2E-06 62.0 6.8 89 141-234 4-100 (663)
229 KOG2113 Predicted RNA binding 94.1 0.038 8.3E-07 60.5 3.3 51 1048-1098 340-392 (394)
230 PF04012 PspA_IM30: PspA/IM30 94.0 11 0.00023 41.0 22.2 58 622-699 12-69 (221)
231 TIGR03007 pepcterm_ChnLen poly 94.0 14 0.00031 45.2 25.8 18 721-738 276-293 (498)
232 COG3883 Uncharacterized protei 94.0 12 0.00027 41.4 25.5 37 678-714 56-92 (265)
233 KOG2879 Predicted E3 ubiquitin 93.9 0.034 7.5E-07 60.1 2.5 45 1048-1093 236-287 (298)
234 COG3883 Uncharacterized protei 93.9 13 0.00027 41.3 22.4 48 678-729 49-96 (265)
235 PF10481 CENP-F_N: Cenp-F N-te 93.9 0.47 1E-05 51.5 10.9 87 755-841 46-132 (307)
236 TIGR03007 pepcterm_ChnLen poly 93.8 3.8 8.2E-05 50.2 20.4 65 678-742 201-269 (498)
237 KOG0802 E3 ubiquitin ligase [P 93.7 0.021 4.5E-07 70.4 0.4 40 1052-1092 292-340 (543)
238 PF15066 CAGE1: Cancer-associa 93.7 11 0.00023 44.4 21.7 25 604-628 313-337 (527)
239 PF00308 Bac_DnaA: Bacterial d 93.6 0.04 8.6E-07 59.8 2.4 50 140-192 3-52 (219)
240 PF05911 DUF869: Plant protein 93.6 15 0.00033 46.9 25.0 78 758-835 88-165 (769)
241 KOG4360 Uncharacterized coiled 93.6 11 0.00023 44.9 21.6 28 755-782 159-186 (596)
242 KOG0962 DNA repair protein RAD 93.5 37 0.00079 45.4 35.6 72 602-694 186-257 (1294)
243 smart00787 Spc7 Spc7 kinetocho 93.5 6.7 0.00015 44.9 20.0 83 760-842 149-235 (312)
244 PF10481 CENP-F_N: Cenp-F N-te 93.5 9.9 0.00021 41.7 19.7 95 640-744 39-133 (307)
245 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 2.7 5.9E-05 41.9 15.0 45 612-656 7-51 (132)
246 PF06008 Laminin_I: Laminin Do 93.2 17 0.00037 40.6 24.2 27 641-667 88-114 (264)
247 PF10473 CENP-F_leu_zip: Leuci 93.2 3.8 8.2E-05 41.1 15.2 96 602-714 18-113 (140)
248 PF08317 Spc7: Spc7 kinetochor 93.1 21 0.00044 41.3 29.2 35 600-634 67-101 (325)
249 PF13514 AAA_27: AAA domain 93.0 46 0.001 45.2 37.0 9 141-149 86-94 (1111)
250 TIGR01843 type_I_hlyD type I s 93.0 22 0.00049 42.1 24.8 26 605-630 78-103 (423)
251 COG4477 EzrA Negative regulato 92.9 27 0.00058 42.1 23.8 52 794-845 451-502 (570)
252 TIGR01005 eps_transp_fam exopo 92.9 6.8 0.00015 50.6 21.4 61 681-741 237-309 (754)
253 KOG0311 Predicted E3 ubiquitin 92.8 0.012 2.6E-07 65.7 -3.1 44 1052-1096 44-93 (381)
254 PF10267 Tmemb_cc2: Predicted 92.8 25 0.00054 41.5 30.1 64 598-668 209-272 (395)
255 PF06785 UPF0242: Uncharacteri 92.8 13 0.00028 41.9 19.7 42 792-833 129-170 (401)
256 PF04641 Rtf2: Rtf2 RING-finge 92.7 0.071 1.5E-06 59.4 2.7 46 1048-1094 110-162 (260)
257 KOG4807 F-actin binding protei 92.7 18 0.00039 41.4 21.0 20 758-777 515-534 (593)
258 PF09789 DUF2353: Uncharacteri 92.7 12 0.00027 42.6 20.2 43 793-835 68-110 (319)
259 PF15450 DUF4631: Domain of un 92.7 13 0.00028 44.5 20.9 131 600-738 336-466 (531)
260 PRK06893 DNA replication initi 92.6 0.1 2.2E-06 57.1 3.6 49 138-192 9-57 (229)
261 KOG4360 Uncharacterized coiled 92.5 6.6 0.00014 46.5 18.0 27 601-627 159-185 (596)
262 PF13851 GAS: Growth-arrest sp 92.5 17 0.00038 38.9 20.5 16 642-657 29-44 (201)
263 KOG0825 PHD Zn-finger protein 92.5 0.03 6.5E-07 67.7 -0.7 46 1052-1098 124-176 (1134)
264 PRK14086 dnaA chromosomal repl 92.4 0.98 2.1E-05 55.9 12.1 50 140-192 283-332 (617)
265 KOG1003 Actin filament-coating 92.4 16 0.00035 38.3 24.2 33 682-714 5-37 (205)
266 PRK06620 hypothetical protein; 92.3 0.088 1.9E-06 56.9 2.7 51 138-192 9-62 (214)
267 PF13870 DUF4201: Domain of un 92.3 17 0.00036 38.1 20.7 160 601-780 6-170 (177)
268 PRK10884 SH3 domain-containing 92.1 2 4.4E-05 46.1 12.6 75 754-838 92-166 (206)
269 PF05010 TACC: Transforming ac 92.0 20 0.00044 38.5 27.6 39 896-934 167-205 (207)
270 PF14915 CCDC144C: CCDC144C pr 91.9 25 0.00054 39.4 33.8 168 675-842 64-245 (305)
271 COG2804 PulE Type II secretory 91.9 0.26 5.7E-06 58.7 6.2 32 162-193 246-277 (500)
272 KOG1039 Predicted E3 ubiquitin 91.9 0.067 1.5E-06 61.2 1.2 47 1050-1097 160-225 (344)
273 TIGR01843 type_I_hlyD type I s 91.8 24 0.00053 41.8 23.1 29 928-956 242-270 (423)
274 KOG1001 Helicase-like transcri 91.8 0.057 1.2E-06 67.5 0.6 40 1052-1093 455-500 (674)
275 PF10498 IFT57: Intra-flagella 91.8 2.6 5.5E-05 49.1 13.9 129 601-740 220-348 (359)
276 PRK10884 SH3 domain-containing 91.7 2.5 5.4E-05 45.4 12.7 39 807-845 121-159 (206)
277 KOG0828 Predicted E3 ubiquitin 91.6 0.053 1.2E-06 62.7 0.0 41 1052-1093 572-634 (636)
278 PF07111 HCR: Alpha helical co 91.4 46 0.00099 41.5 41.9 58 600-657 330-390 (739)
279 PF12325 TMF_TATA_bd: TATA ele 91.3 1.8 3.8E-05 42.4 10.1 101 597-711 12-112 (120)
280 PF08614 ATG16: Autophagy prot 91.3 1.4 3.1E-05 46.9 10.4 56 639-714 101-156 (194)
281 KOG4302 Microtubule-associated 91.1 16 0.00036 45.5 20.4 163 679-845 19-187 (660)
282 PF13870 DUF4201: Domain of un 91.1 5.8 0.00013 41.5 14.7 30 675-704 43-72 (177)
283 PF14988 DUF4515: Domain of un 91.0 13 0.00028 40.0 17.3 46 788-833 154-199 (206)
284 PF06005 DUF904: Protein of un 91.0 2.9 6.3E-05 37.1 10.2 58 791-848 5-62 (72)
285 COG2805 PilT Tfp pilus assembl 90.9 0.13 2.9E-06 57.1 2.2 32 161-192 112-143 (353)
286 KOG0993 Rab5 GTPase effector R 90.9 36 0.00078 39.4 27.8 26 476-501 158-183 (542)
287 KOG2991 Splicing regulator [RN 90.9 12 0.00027 40.5 16.5 57 901-957 233-289 (330)
288 PF15035 Rootletin: Ciliary ro 90.7 18 0.0004 38.1 17.8 96 641-740 17-115 (182)
289 COG4913 Uncharacterized protei 90.7 32 0.00069 42.7 21.5 37 595-631 610-653 (1104)
290 KOG3002 Zn finger protein [Gen 90.7 0.12 2.5E-06 58.4 1.6 41 1052-1094 49-92 (299)
291 KOG1814 Predicted E3 ubiquitin 90.6 0.089 1.9E-06 60.1 0.6 29 1051-1080 184-215 (445)
292 KOG2129 Uncharacterized conser 90.4 41 0.00088 39.1 25.7 85 723-810 204-298 (552)
293 PF05911 DUF869: Plant protein 90.3 43 0.00094 42.9 23.6 40 695-738 127-166 (769)
294 PF12861 zf-Apc11: Anaphase-pr 90.3 0.15 3.3E-06 46.2 1.7 30 1063-1093 46-82 (85)
295 KOG0982 Centrosomal protein Nu 90.2 41 0.00089 39.3 20.9 48 795-842 302-349 (502)
296 PF13851 GAS: Growth-arrest sp 90.2 29 0.00064 37.2 21.9 52 678-733 31-82 (201)
297 KOG2991 Splicing regulator [RN 90.2 31 0.00068 37.5 20.0 26 819-844 272-297 (330)
298 PF10168 Nup88: Nuclear pore c 90.2 12 0.00027 47.7 18.9 31 98-128 123-158 (717)
299 TIGR01005 eps_transp_fam exopo 90.1 8.2 0.00018 49.9 18.0 17 345-361 79-95 (754)
300 KOG4787 Uncharacterized conser 90.1 5.2 0.00011 47.8 14.1 82 752-833 463-544 (852)
301 PF10168 Nup88: Nuclear pore c 90.0 21 0.00045 45.7 20.7 16 601-616 536-551 (717)
302 PF09787 Golgin_A5: Golgin sub 90.0 57 0.0012 40.2 30.2 82 754-835 220-305 (511)
303 PF09755 DUF2046: Uncharacteri 89.8 40 0.00087 38.2 33.3 21 604-624 23-43 (310)
304 KOG1103 Predicted coiled-coil 89.8 40 0.00086 38.1 22.0 144 695-848 89-243 (561)
305 KOG1899 LAR transmembrane tyro 89.6 21 0.00045 43.5 18.5 101 600-714 103-207 (861)
306 PF04111 APG6: Autophagy prote 89.6 3.2 6.9E-05 47.6 12.0 21 637-657 13-33 (314)
307 PF04156 IncA: IncA protein; 89.5 9.3 0.0002 40.4 14.9 53 790-842 123-175 (191)
308 PRK06835 DNA replication prote 89.3 0.14 3E-06 59.1 0.7 36 156-193 167-202 (329)
309 PF06818 Fez1: Fez1; InterPro 89.2 34 0.00073 36.5 21.9 64 758-824 134-197 (202)
310 PRK12377 putative replication 89.0 0.3 6.5E-06 54.0 3.1 50 142-193 71-120 (248)
311 PRK10361 DNA recombination pro 89.0 62 0.0013 39.2 24.4 25 814-838 168-192 (475)
312 PRK00149 dnaA chromosomal repl 88.9 0.25 5.4E-06 59.7 2.6 50 140-192 117-166 (450)
313 TIGR03017 EpsF chain length de 88.9 30 0.00065 41.6 20.5 24 640-663 215-238 (444)
314 PRK06526 transposase; Provisio 88.7 0.21 4.5E-06 55.5 1.6 45 144-193 73-117 (254)
315 PRK08084 DNA replication initi 88.7 0.37 7.9E-06 52.9 3.5 49 138-192 15-63 (235)
316 PRK08116 hypothetical protein; 88.7 0.27 5.8E-06 55.1 2.5 51 140-192 80-132 (268)
317 PLN03229 acetyl-coenzyme A car 88.5 61 0.0013 41.0 22.3 51 320-387 246-296 (762)
318 PRK05642 DNA replication initi 88.5 0.38 8.1E-06 52.8 3.5 48 138-192 12-63 (234)
319 PRK10869 recombination and rep 88.5 75 0.0016 39.6 25.3 62 781-842 301-365 (553)
320 PF04111 APG6: Autophagy prote 88.5 4.9 0.00011 46.1 12.5 20 758-777 116-135 (314)
321 KOG0579 Ste20-like serine/thre 88.4 74 0.0016 39.4 24.8 18 857-874 938-955 (1187)
322 PF11932 DUF3450: Protein of u 88.4 23 0.00049 39.4 17.5 13 901-913 128-140 (251)
323 PF00769 ERM: Ezrin/radixin/mo 88.4 9.3 0.0002 42.3 14.2 36 795-830 80-115 (246)
324 PF12795 MscS_porin: Mechanose 88.3 45 0.00097 36.7 20.0 63 893-955 153-215 (240)
325 PF15397 DUF4618: Domain of un 88.3 46 0.001 36.9 27.6 36 797-832 186-221 (258)
326 KOG4807 F-actin binding protei 88.2 55 0.0012 37.7 24.5 67 804-874 421-487 (593)
327 COG0593 DnaA ATPase involved i 88.1 0.35 7.7E-06 56.8 3.0 51 139-192 81-131 (408)
328 PRK10698 phage shock protein P 88.1 44 0.00096 36.4 22.7 40 617-657 8-48 (222)
329 KOG3039 Uncharacterized conser 88.0 0.29 6.4E-06 52.1 2.1 43 1051-1094 221-271 (303)
330 PRK14088 dnaA chromosomal repl 87.9 0.3 6.4E-06 58.8 2.3 49 140-192 100-148 (440)
331 PRK14087 dnaA chromosomal repl 87.8 0.31 6.7E-06 58.8 2.4 49 141-192 111-159 (450)
332 PRK09087 hypothetical protein; 87.8 0.38 8.1E-06 52.5 2.9 51 136-192 12-62 (226)
333 PF15450 DUF4631: Domain of un 87.7 73 0.0016 38.5 33.4 39 605-643 103-141 (531)
334 KOG0243 Kinesin-like protein [ 87.6 1.1E+02 0.0023 40.3 33.8 71 644-714 445-516 (1041)
335 PF14197 Cep57_CLD_2: Centroso 87.3 6.6 0.00014 34.6 9.7 60 778-837 7-66 (69)
336 PF07058 Myosin_HC-like: Myosi 87.2 13 0.00028 41.5 13.8 38 891-928 116-153 (351)
337 KOG1002 Nucleotide excision re 87.0 0.17 3.6E-06 59.1 -0.5 41 1051-1092 536-585 (791)
338 PF15066 CAGE1: Cancer-associa 86.9 74 0.0016 37.8 25.6 69 765-833 365-433 (527)
339 TIGR00634 recN DNA repair prot 86.9 93 0.002 38.9 24.3 14 178-191 26-39 (563)
340 TIGR00362 DnaA chromosomal rep 86.8 0.42 9E-06 56.9 2.7 50 140-192 105-154 (405)
341 PF09728 Taxilin: Myosin-like 86.7 66 0.0014 36.9 37.0 30 894-923 241-270 (309)
342 KOG0240 Kinesin (SMY1 subfamil 86.6 87 0.0019 38.3 24.0 30 601-630 341-370 (607)
343 PF10186 Atg14: UV radiation r 86.5 60 0.0013 36.6 20.0 25 690-714 22-46 (302)
344 PF06005 DUF904: Protein of un 86.3 12 0.00026 33.3 10.8 27 757-783 6-32 (72)
345 PRK07952 DNA replication prote 86.2 0.55 1.2E-05 51.8 3.1 51 141-193 68-118 (244)
346 TIGR00618 sbcc exonuclease Sbc 86.0 1.4E+02 0.0031 40.2 37.8 17 175-191 27-43 (1042)
347 COG1474 CDC6 Cdc6-related prot 86.0 1 2.3E-05 52.7 5.4 26 166-191 33-59 (366)
348 PF11932 DUF3450: Protein of u 86.0 10 0.00022 42.1 13.0 57 788-844 47-103 (251)
349 PF00769 ERM: Ezrin/radixin/mo 85.8 54 0.0012 36.3 18.4 59 781-839 59-117 (246)
350 PF15294 Leu_zip: Leucine zipp 85.7 66 0.0014 36.1 20.6 83 686-777 130-212 (278)
351 PRK08903 DnaA regulatory inact 85.6 0.76 1.6E-05 49.9 3.8 52 136-192 9-60 (227)
352 KOG4677 Golgi integral membran 85.5 72 0.0016 37.6 19.2 40 793-832 427-466 (554)
353 PRK10246 exonuclease subunit S 85.4 1.5E+02 0.0033 40.0 34.7 17 175-191 31-47 (1047)
354 TIGR02977 phageshock_pspA phag 85.4 60 0.0013 35.3 24.1 43 614-657 5-48 (219)
355 TIGR03420 DnaA_homol_Hda DnaA 85.4 0.7 1.5E-05 49.9 3.4 51 136-192 6-56 (226)
356 COG4026 Uncharacterized protei 85.3 4.8 0.0001 42.6 9.1 73 754-826 134-206 (290)
357 COG1842 PspA Phage shock prote 85.3 48 0.001 36.2 17.2 58 790-847 17-74 (225)
358 COG2433 Uncharacterized conser 85.2 6.6 0.00014 47.7 11.4 90 598-708 419-508 (652)
359 KOG0804 Cytoplasmic Zn-finger 85.1 33 0.00071 40.4 16.4 63 678-740 386-448 (493)
360 TIGR02449 conserved hypothetic 85.0 6.8 0.00015 34.0 8.3 61 764-824 2-62 (65)
361 TIGR03017 EpsF chain length de 84.7 43 0.00092 40.3 18.6 22 721-742 255-276 (444)
362 PF12325 TMF_TATA_bd: TATA ele 84.7 29 0.00063 34.0 13.7 44 788-831 21-64 (120)
363 KOG2685 Cystoskeletal protein 84.6 91 0.002 36.7 25.0 50 792-841 346-395 (421)
364 KOG0239 Kinesin (KAR3 subfamil 84.4 1.3E+02 0.0028 38.3 22.8 141 680-839 174-314 (670)
365 PF08826 DMPK_coil: DMPK coile 84.4 11 0.00024 32.3 9.3 44 693-740 16-59 (61)
366 TIGR02928 orc1/cdc6 family rep 84.4 0.86 1.9E-05 53.2 3.8 27 166-192 31-58 (365)
367 PRK08181 transposase; Validate 84.4 0.84 1.8E-05 51.2 3.5 45 144-193 80-125 (269)
368 PF04912 Dynamitin: Dynamitin 84.3 97 0.0021 36.7 22.1 238 637-909 98-387 (388)
369 KOG0804 Cytoplasmic Zn-finger 84.0 19 0.0004 42.4 13.8 13 294-306 147-159 (493)
370 KOG2113 Predicted RNA binding 83.8 0.4 8.6E-06 52.9 0.6 48 1051-1098 136-188 (394)
371 PF15290 Syntaphilin: Golgi-lo 83.6 10 0.00023 41.7 11.1 46 678-741 93-138 (305)
372 TIGR01000 bacteriocin_acc bact 83.5 1.1E+02 0.0025 37.0 25.7 22 604-625 100-121 (457)
373 PF14992 TMCO5: TMCO5 family 83.5 53 0.0011 36.8 16.6 31 641-671 19-49 (280)
374 COG0497 RecN ATPase involved i 83.4 75 0.0016 39.2 19.4 11 180-190 28-38 (557)
375 PRK08939 primosomal protein Dn 83.4 0.6 1.3E-05 53.4 1.8 51 142-193 124-175 (306)
376 COG4913 Uncharacterized protei 83.4 1.3E+02 0.0029 37.6 22.3 42 641-695 617-658 (1104)
377 KOG2077 JNK/SAPK-associated pr 83.2 14 0.00029 44.4 12.5 77 766-842 298-374 (832)
378 PF03148 Tektin: Tektin family 83.2 1.1E+02 0.0023 36.4 30.3 52 789-840 243-294 (384)
379 PRK00411 cdc6 cell division co 83.2 1 2.2E-05 53.2 3.8 36 155-191 36-72 (394)
380 PF05276 SH3BP5: SH3 domain-bi 83.0 80 0.0017 34.8 22.2 79 782-860 94-177 (239)
381 PLN03188 kinesin-12 family pro 82.9 1.9E+02 0.004 39.0 30.6 46 616-661 941-988 (1320)
382 PRK08727 hypothetical protein; 82.8 0.95 2E-05 49.6 3.1 48 137-192 11-59 (233)
383 COG0497 RecN ATPase involved i 82.8 1.2E+02 0.0025 37.6 20.7 18 856-873 370-387 (557)
384 PLN03229 acetyl-coenzyme A car 82.8 1.5E+02 0.0032 37.7 23.0 10 101-110 49-58 (762)
385 TIGR03185 DNA_S_dndD DNA sulfu 82.7 1.5E+02 0.0032 37.8 38.2 41 805-845 422-462 (650)
386 KOG1103 Predicted coiled-coil 82.7 93 0.002 35.3 21.8 47 802-848 243-289 (561)
387 PLN00020 ribulose bisphosphate 82.6 2.5 5.4E-05 49.1 6.3 51 140-190 110-164 (413)
388 KOG1962 B-cell receptor-associ 81.9 9 0.00019 41.1 9.7 35 678-712 176-210 (216)
389 PF12795 MscS_porin: Mechanose 81.9 87 0.0019 34.5 25.2 98 672-778 76-173 (240)
390 PF04851 ResIII: Type III rest 81.8 0.79 1.7E-05 47.2 1.9 30 164-193 14-44 (184)
391 COG2433 Uncharacterized conser 81.7 13 0.00029 45.2 12.0 36 896-931 473-508 (652)
392 COG5175 MOT2 Transcriptional r 81.4 0.51 1.1E-05 52.3 0.3 41 1053-1094 16-65 (480)
393 PRK15422 septal ring assembly 81.2 16 0.00036 32.6 9.3 25 763-787 19-43 (79)
394 COG3074 Uncharacterized protei 81.2 17 0.00038 31.4 9.1 20 764-783 20-39 (79)
395 PF13166 AAA_13: AAA domain 81.0 1.4E+02 0.0029 38.4 22.1 14 176-189 18-31 (712)
396 PF06008 Laminin_I: Laminin Do 80.9 99 0.0022 34.5 30.8 13 603-615 26-38 (264)
397 PF05384 DegS: Sensor protein 80.9 72 0.0016 32.9 18.9 55 897-951 77-131 (159)
398 PF06120 Phage_HK97_TLTM: Tail 80.7 66 0.0014 36.6 16.5 76 639-714 87-167 (301)
399 PF09304 Cortex-I_coil: Cortex 80.7 54 0.0012 31.3 13.9 46 755-800 9-54 (107)
400 KOG4445 Uncharacterized conser 80.1 0.4 8.7E-06 52.5 -1.0 25 1053-1078 117-144 (368)
401 KOG0982 Centrosomal protein Nu 80.0 1.3E+02 0.0029 35.4 26.1 19 612-630 219-237 (502)
402 PF14197 Cep57_CLD_2: Centroso 79.5 22 0.00047 31.3 9.7 64 781-844 3-66 (69)
403 PRK10246 exonuclease subunit S 79.5 2.4E+02 0.0052 38.1 38.6 24 925-948 860-883 (1047)
404 COG4026 Uncharacterized protei 79.5 18 0.0004 38.4 10.7 42 801-842 153-194 (290)
405 PF11559 ADIP: Afadin- and alp 79.5 63 0.0014 32.8 14.8 34 678-711 98-131 (151)
406 cd00009 AAA The AAA+ (ATPases 79.3 1.3 2.9E-05 43.1 2.5 26 166-191 11-36 (151)
407 PTZ00454 26S protease regulato 79.2 1.4 2.9E-05 52.4 2.9 90 102-191 89-196 (398)
408 PF09738 DUF2051: Double stran 79.1 38 0.00083 38.6 14.1 27 807-833 80-106 (302)
409 KOG0979 Structural maintenance 79.1 2.2E+02 0.0047 37.3 28.8 77 768-844 261-337 (1072)
410 PF04012 PspA_IM30: PspA/IM30 78.9 1E+02 0.0022 33.4 25.4 19 897-915 165-183 (221)
411 PF13245 AAA_19: Part of AAA d 78.8 1.1 2.4E-05 40.0 1.6 26 166-192 3-28 (76)
412 PTZ00361 26 proteosome regulat 78.6 2.3 5E-05 51.0 4.6 89 103-191 128-234 (438)
413 KOG2932 E3 ubiquitin ligase in 78.5 0.73 1.6E-05 50.8 0.3 42 1051-1094 90-135 (389)
414 PF14992 TMCO5: TMCO5 family 78.4 71 0.0015 35.8 15.4 127 603-734 20-165 (280)
415 PF09744 Jnk-SapK_ap_N: JNK_SA 78.4 27 0.00058 36.0 11.5 78 764-844 45-122 (158)
416 PRK03992 proteasome-activating 78.1 1.9 4E-05 51.2 3.6 51 141-191 127-182 (389)
417 KOG1962 B-cell receptor-associ 77.8 21 0.00045 38.4 10.8 28 807-834 182-209 (216)
418 KOG0989 Replication factor C, 77.7 1.7 3.8E-05 48.7 2.9 36 157-192 39-75 (346)
419 PF14570 zf-RING_4: RING/Ubox 77.6 0.77 1.7E-05 37.2 0.1 38 1054-1092 1-47 (48)
420 PRK10436 hypothetical protein; 77.4 1.2 2.6E-05 53.8 1.7 28 165-192 209-236 (462)
421 PF08172 CASP_C: CASP C termin 77.3 27 0.00058 38.7 12.0 53 788-840 84-136 (248)
422 KOG0826 Predicted E3 ubiquitin 77.3 0.71 1.5E-05 51.5 -0.2 51 1049-1099 298-354 (357)
423 PRK06921 hypothetical protein; 77.2 1.9 4E-05 48.4 3.1 35 157-192 98-135 (266)
424 PF14073 Cep57_CLD: Centrosome 77.1 1E+02 0.0022 32.4 18.6 76 750-825 59-134 (178)
425 PF10146 zf-C4H2: Zinc finger- 77.0 38 0.00083 37.1 12.9 50 676-729 34-83 (230)
426 PF11559 ADIP: Afadin- and alp 76.9 89 0.0019 31.7 18.4 56 678-737 70-125 (151)
427 PF10146 zf-C4H2: Zinc finger- 76.9 49 0.0011 36.3 13.7 21 1072-1092 194-218 (230)
428 PF10272 Tmpp129: Putative tra 76.7 3.2 6.9E-05 48.1 4.8 44 1024-1067 243-287 (358)
429 PTZ00112 origin recognition co 76.4 2.3 4.9E-05 54.3 3.7 22 171-192 778-799 (1164)
430 PRK12704 phosphodiesterase; Pr 76.2 2E+02 0.0043 35.6 20.3 167 614-813 30-197 (520)
431 KOG3842 Adaptor protein Pellin 76.0 1.5 3.2E-05 48.5 1.8 9 321-329 253-261 (429)
432 KOG0297 TNF receptor-associate 76.0 1.3 2.8E-05 52.4 1.5 44 1051-1095 21-69 (391)
433 KOG2129 Uncharacterized conser 76.0 1.7E+02 0.0036 34.4 20.6 22 692-713 205-226 (552)
434 TIGR03319 YmdA_YtgF conserved 75.9 2.1E+02 0.0045 35.4 20.8 8 865-872 214-221 (514)
435 PF10235 Cript: Microtubule-as 75.8 1.5 3.3E-05 40.3 1.6 37 1052-1094 45-81 (90)
436 TIGR02538 type_IV_pilB type IV 75.5 1.4 3.1E-05 54.6 1.8 28 165-192 307-334 (564)
437 PF04949 Transcrip_act: Transc 75.5 95 0.0021 31.3 16.7 46 686-739 32-78 (159)
438 PRK12422 chromosomal replicati 75.3 1.9 4.2E-05 51.9 2.7 50 140-192 106-159 (445)
439 PF03148 Tektin: Tektin family 75.3 1.8E+02 0.0039 34.4 30.4 49 644-698 120-168 (384)
440 TIGR01000 bacteriocin_acc bact 75.3 2E+02 0.0043 34.9 25.3 27 605-631 94-120 (457)
441 KOG3091 Nuclear pore complex, 75.2 1E+02 0.0023 37.0 16.5 90 603-693 336-430 (508)
442 TIGR02533 type_II_gspE general 75.2 1.7 3.6E-05 53.0 2.2 28 165-192 233-260 (486)
443 PF10212 TTKRSYEDQ: Predicted 75.0 2.1E+02 0.0045 35.0 21.3 27 788-814 425-451 (518)
444 cd00046 DEXDc DEAD-like helica 74.9 1.2 2.7E-05 42.8 0.8 17 177-193 3-19 (144)
445 COG4477 EzrA Negative regulato 74.8 2.1E+02 0.0045 34.9 34.1 27 751-777 312-338 (570)
446 TIGR00631 uvrb excinuclease AB 74.6 3 6.4E-05 52.7 4.2 88 142-234 2-97 (655)
447 PRK15422 septal ring assembly 74.4 50 0.0011 29.7 10.3 19 830-848 51-69 (79)
448 COG1842 PspA Phage shock prote 74.4 1.4E+02 0.003 32.7 22.5 37 678-714 42-78 (225)
449 TIGR01242 26Sp45 26S proteasom 74.3 2.9 6.3E-05 49.0 3.8 51 141-191 118-173 (364)
450 PRK09183 transposase/IS protei 74.1 1.7 3.7E-05 48.5 1.7 45 144-193 77-121 (259)
451 KOG2685 Cystoskeletal protein 74.1 1.9E+02 0.0041 34.1 28.3 100 637-740 88-191 (421)
452 PRK10361 DNA recombination pro 73.8 2.2E+02 0.0047 34.7 25.3 16 764-779 142-157 (475)
453 PF12240 Angiomotin_C: Angiomo 73.8 1E+02 0.0023 32.8 14.4 161 727-926 3-165 (205)
454 PF13401 AAA_22: AAA domain; P 73.1 1.2 2.6E-05 43.4 0.3 19 174-192 4-22 (131)
455 KOG1923 Rac1 GTPase effector F 73.0 12 0.00025 46.7 8.4 48 7-54 275-323 (830)
456 PF00270 DEAD: DEAD/DEAH box h 72.9 2 4.4E-05 43.7 1.9 26 165-192 7-32 (169)
457 PF00437 T2SE: Type II/IV secr 72.7 1.7 3.7E-05 48.6 1.3 19 174-192 127-145 (270)
458 PF05290 Baculo_IE-1: Baculovi 72.6 2.8 6.1E-05 41.1 2.5 62 1033-1095 62-134 (140)
459 KOG2660 Locus-specific chromos 72.5 0.8 1.7E-05 51.4 -1.3 46 1052-1098 16-66 (331)
460 COG1222 RPT1 ATP-dependent 26S 72.5 5.8 0.00013 45.6 5.4 116 100-215 93-243 (406)
461 TIGR01420 pilT_fam pilus retra 72.5 2 4.4E-05 50.0 1.9 28 165-192 113-140 (343)
462 KOG1734 Predicted RING-contain 72.4 1.4 3E-05 47.8 0.5 44 1050-1094 223-282 (328)
463 PLN02939 transferase, transfer 72.3 3.3E+02 0.0072 36.1 24.9 23 612-634 160-182 (977)
464 TIGR02525 plasmid_TraJ plasmid 72.3 2.2 4.7E-05 50.1 2.1 20 173-192 148-167 (372)
465 cd01131 PilT Pilus retraction 72.1 1.6 3.4E-05 46.6 0.8 19 174-192 1-19 (198)
466 COG3096 MukB Uncharacterized p 72.1 2.7E+02 0.0059 35.0 30.4 309 614-952 784-1114(1480)
467 TIGR00634 recN DNA repair prot 71.9 2.7E+02 0.0058 34.9 26.4 13 1053-1065 494-506 (563)
468 COG5008 PilU Tfp pilus assembl 71.8 2.8 6.1E-05 46.0 2.6 31 162-192 115-145 (375)
469 PF13604 AAA_30: AAA domain; P 71.7 2.3 4.9E-05 45.4 1.9 28 165-192 9-36 (196)
470 COG1484 DnaC DNA replication p 71.6 3.1 6.8E-05 46.2 3.1 50 141-193 75-124 (254)
471 TIGR02524 dot_icm_DotB Dot/Icm 71.5 2.2 4.8E-05 49.8 2.0 21 172-192 132-152 (358)
472 KOG2751 Beclin-like protein [S 71.1 2.3E+02 0.0049 33.7 18.1 97 610-714 109-216 (447)
473 smart00382 AAA ATPases associa 70.9 1.7 3.7E-05 41.7 0.8 18 175-192 3-20 (148)
474 PF10498 IFT57: Intra-flagella 70.9 91 0.002 36.6 14.8 29 633-661 234-262 (359)
475 KOG0727 26S proteasome regulat 70.9 5.2 0.00011 43.5 4.3 113 103-215 100-247 (408)
476 PF01935 DUF87: Domain of unkn 70.6 1.7 3.7E-05 47.2 0.7 16 177-192 26-41 (229)
477 PF07106 TBPIP: Tat binding pr 70.2 22 0.00048 36.9 8.8 92 695-822 72-163 (169)
478 PF12777 MT: Microtubule-bindi 70.1 2.2E+02 0.0048 33.2 18.7 251 674-955 8-293 (344)
479 cd01129 PulE-GspE PulE/GspE Th 70.0 2.7 5.8E-05 47.0 2.1 27 166-192 72-98 (264)
480 PF09304 Cortex-I_coil: Cortex 69.9 1.1E+02 0.0023 29.4 14.4 78 753-832 14-91 (107)
481 PF01695 IstB_IS21: IstB-like 69.7 2.8 6E-05 44.0 2.0 19 175-193 48-66 (178)
482 PF10267 Tmemb_cc2: Predicted 69.7 1.5E+02 0.0032 35.2 16.2 20 432-451 4-23 (395)
483 TIGR03015 pepcterm_ATPase puta 69.4 3.5 7.5E-05 45.8 2.9 24 168-191 37-60 (269)
484 PRK11519 tyrosine kinase; Prov 69.3 1.5E+02 0.0032 38.3 17.9 29 641-669 268-296 (719)
485 smart00744 RINGv The RING-vari 69.3 2.5 5.3E-05 34.5 1.2 36 1053-1089 1-49 (49)
486 KOG4687 Uncharacterized coiled 69.1 1.9E+02 0.0041 32.0 19.0 119 602-733 10-131 (389)
487 PF13166 AAA_13: AAA domain 68.9 3.4E+02 0.0073 34.8 23.0 24 351-375 30-53 (712)
488 KOG4438 Centromere-associated 68.8 2.5E+02 0.0054 33.3 26.1 198 608-842 216-420 (446)
489 PF12761 End3: Actin cytoskele 68.6 28 0.00061 36.8 9.0 89 612-700 100-193 (195)
490 TIGR02449 conserved hypothetic 68.5 34 0.00074 29.8 7.9 43 781-823 12-54 (65)
491 KOG4677 Golgi integral membran 68.4 2.6E+02 0.0056 33.3 23.7 50 799-848 304-353 (554)
492 PF15290 Syntaphilin: Golgi-lo 68.4 41 0.00089 37.2 10.4 41 757-797 119-163 (305)
493 PF03962 Mnd1: Mnd1 family; I 68.4 88 0.0019 33.2 12.9 89 759-848 66-158 (188)
494 TIGR01010 BexC_CtrB_KpsE polys 68.4 1.1E+02 0.0023 35.9 15.1 29 641-669 171-199 (362)
495 PF08172 CASP_C: CASP C termin 68.3 69 0.0015 35.5 12.6 41 805-845 87-127 (248)
496 KOG4005 Transcription factor X 68.3 33 0.00071 36.9 9.4 91 708-813 58-148 (292)
497 PF04728 LPP: Lipoprotein leuc 68.3 36 0.00079 28.6 7.7 54 769-822 3-56 (56)
498 KOG4005 Transcription factor X 67.7 81 0.0018 34.1 12.1 94 768-865 69-162 (292)
499 PF12846 AAA_10: AAA-like doma 67.7 2.1 4.6E-05 48.0 0.7 18 174-191 1-18 (304)
500 KOG4403 Cell surface glycoprot 67.5 2.6E+02 0.0056 33.0 17.7 143 718-939 233-375 (575)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-89 Score=820.28 Aligned_cols=400 Identities=36% Similarity=0.593 Sum_probs=347.4
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC-CE-EEecCC--C--CCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADG-DK-IVRNEY--N--PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~-~~~~~~--~--~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
...+.||+|+|||||++.+|......+++.++| .+ |.+... . -.+.|+||+||||.+.|.+||+.++.|+|..|
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 345679999999999999999888888888877 33 332222 2 35789999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCC--------CCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCC
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMHG--------DQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~G--------~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~ 241 (1100)
+.|||||||||||||+||||||.| .+..+|||||++.+||+.+.... .+|.|+|||||+|||.|+|||+|.
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCc
Confidence 999999999999999999999999 56789999999999999998664 899999999999999999999875
Q ss_pred C---CcceEEeCC------CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-C
Q 001324 242 G---QNLRVREDA------QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-E 311 (1100)
Q Consensus 242 ~---~~l~i~e~~------~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~ 311 (1100)
. ..+.+.+++ .|++|.||.+++|.++.|++.+|.+|...|++++|.||.+|||||+||+|+|....... +
T Consensus 204 ~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~g 283 (1041)
T KOG0243|consen 204 DTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEG 283 (1041)
T ss_pred cccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcc
Confidence 4 345555554 57899999999999999999999999999999999999999999999999998765433 3
Q ss_pred CCceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccce
Q 001324 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 390 (1100)
Q Consensus 312 ~~~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~ 390 (1100)
...++.|||+||||||||. +.+|+.+.|.+|++.||+||+|||+||+||.++. .|||||+|||||||||||||.+||+
T Consensus 284 eelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~ 362 (1041)
T KOG0243|consen 284 EELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTC 362 (1041)
T ss_pred hhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeE
Confidence 3567889999999999997 7899999999999999999999999999999965 5999999999999999999999999
Q ss_pred eEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHH
Q 001324 391 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQK 470 (1100)
Q Consensus 391 ~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~~~~~~~~~ee~~~l~qk 470 (1100)
|||||||+..+++||++||.||.|||+|+|+|.+|..+..+.+++.|-.||.+|+.+|...|.+..+..+++.+.+.
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~--- 439 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQE--- 439 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999988766655666554321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 471 LEEGQVKMQSRLEEEEEAKAALMSRIQRLTK 501 (1100)
Q Consensus 471 LEe~q~klq~~lee~ee~~~al~~ri~~L~k 501 (1100)
+.....+..++++.++..+++..++..++-
T Consensus 440 -e~e~~~~~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 440 -EKEKKEMAEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234455566666666666666655543
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-90 Score=812.95 Aligned_cols=379 Identities=39% Similarity=0.584 Sum_probs=335.7
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecC---CCCCcceecceecCCC-------CChhHHHhhhhHHHHHH
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNE---YNPATAYAFDRVFGPH-------ANSQEVYDVAARPVVKA 168 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---~~~~~~f~FD~Vf~~~-------~~q~~vy~~~~~~lv~~ 168 (1100)
..+|+|+||||||+.+|......+++.+.|+++.+.. .+....|+||++||.+ ++|..||+.++.++|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 4689999999999999998888888888887543322 2234469999999876 68999999999999999
Q ss_pred HhcCCceeEEeeccCCCCCccccCCCC--CCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCC-CC-C
Q 001324 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD-PT-G 242 (1100)
Q Consensus 169 ~l~G~n~ti~aYGqtgSGKT~Tm~G~~--~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~-~~-~ 242 (1100)
+|+|||+||||||||||||||||+|.+ +++|||||+|++||.+|... .+..|.|.|||||||||+|+|||+ |. +
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999987 89999999999999999754 356899999999999999999999 54 5
Q ss_pred CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCC--CceEEee
Q 001324 243 QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFSQ 319 (1100)
Q Consensus 243 ~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~--~~~~~s~ 319 (1100)
.+|+|||+| .|+||++|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||+|.+.+..+.... +..++|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SK 242 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSK 242 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeee
Confidence 789999999 7999999999999999999999999999999999999999999999999999987654433 4678999
Q ss_pred eEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhc------CCCCCcCCCCCccchhhcccCCCCccceeE
Q 001324 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE------GKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1100)
Q Consensus 320 L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~------~~~~~iPyRdSkLT~lL~dsLgGns~t~~I 392 (1100)
|+||||||||| +.+++.|.|++||.+|||||++||+||+||++ ++..+||||||.|||||+++|||||||+||
T Consensus 243 IsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMI 322 (1221)
T KOG0245|consen 243 ISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMI 322 (1221)
T ss_pred eeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhh
Confidence 99999999999 67899999999999999999999999999986 234599999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhccccC-------CCCHHHHH
Q 001324 393 CTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGILV-------GVSHEELM 465 (1100)
Q Consensus 393 ~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~~~~~-------~~~~ee~~ 465 (1100)
|+|||++.||+|||+|||||.|||+|+|++++|+..+.+ +|++|+.||.+|+..+.....+... .....++.
T Consensus 323 AAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e 401 (1221)
T KOG0245|consen 323 AALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIE 401 (1221)
T ss_pred hccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCCcccccccccHH
Confidence 999999999999999999999999999999999977665 8999999999999988754333211 13355677
Q ss_pred HHHHHHHHHHHHH
Q 001324 466 TLRQKLEEGQVKM 478 (1100)
Q Consensus 466 ~l~qkLEe~q~kl 478 (1100)
.++++|.+..+.|
T Consensus 402 ~~~~~L~E~Ek~m 414 (1221)
T KOG0245|consen 402 ELRERLQETEKIM 414 (1221)
T ss_pred HHHHHHHHHHHHH
Confidence 7778777755444
No 3
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.7e-82 Score=769.51 Aligned_cols=356 Identities=37% Similarity=0.629 Sum_probs=315.9
Q ss_pred CCCCCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001324 91 PLDAPQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1100)
Q Consensus 91 ~~~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l 170 (1100)
+.+.+....++|+|+|||||+++.| .+..+++..+++.+.+. .+.|.||+||+++++|++||+.++.|+|+++|
T Consensus 89 ~~~en~~~ds~VkV~VRVRPl~~~E--~g~~iV~~~s~dsl~I~----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svL 162 (1320)
T PLN03188 89 TAPENGVSDSGVKVIVRMKPLNKGE--EGEMIVQKMSNDSLTIN----GQTFTFDSIADPESTQEDIFQLVGAPLVENCL 162 (1320)
T ss_pred ccccccCCCCCeEEEEEcCCCCCcc--CCCeeEEEcCCCeEEEe----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444455677999999999999886 35566666677766654 36799999999999999999999999999999
Q ss_pred cCCceeEEeeccCCCCCccccCCCC----------CCCCchhHHHHHHHHHhhcC------CCceEEEEEeeeeeeccee
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMHGDQ----------NSPGIIPLAIKDVFSIIQDT------PGREFLLRVSYLEIYNEVI 234 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~G~~----------~~~Giipr~~~~lF~~i~~~------~~~~~~v~vS~~EIyne~i 234 (1100)
+|||+||||||||||||||||+|+. .++|||||++++||..|... ....|.|+|||||||||+|
T Consensus 163 dGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI 242 (1320)
T PLN03188 163 AGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQI 242 (1320)
T ss_pred cCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcc
Confidence 9999999999999999999999964 46899999999999998642 3457999999999999999
Q ss_pred eecCCCCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecC--CC
Q 001324 235 NDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DE 311 (1100)
Q Consensus 235 ~DLL~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~--~~ 311 (1100)
||||+|....|.|++++ .|+||.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|.|.+.... ++
T Consensus 243 ~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg 322 (1320)
T PLN03188 243 TDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADG 322 (1320)
T ss_pred eeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCC
Confidence 99999998899999998 6899999999999999999999999999999999999999999999999999875432 23
Q ss_pred CCceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhc----CCCCCcCCCCCccchhhcccCCCC
Q 001324 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE----GKASHVPYRDSKLTRLLQSSLSGH 386 (1100)
Q Consensus 312 ~~~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~----~~~~~iPyRdSkLT~lL~dsLgGn 386 (1100)
...+..|+|+||||||||| .++++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+||||
T Consensus 323 ~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGN 402 (1320)
T PLN03188 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1320)
T ss_pred CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCC
Confidence 3456789999999999999 56889999999999999999999999999985 455799999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhcc
Q 001324 387 GHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRG 454 (1100)
Q Consensus 387 s~t~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~~ 454 (1100)
|+|+|||||||+..+++||++||+||+|||+|+|.|.+|..... .+..++..|..|+.||..++..
T Consensus 403 SKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~--~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD--DVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred ceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh--hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987543 3556777788888888777654
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-88 Score=789.30 Aligned_cols=355 Identities=43% Similarity=0.625 Sum_probs=319.9
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC--EEEecC-----CCCCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVRNE-----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~~~-----~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l 170 (1100)
...+|+|+||+||++..+...+....+..+.. .+.... ..+.+.|+||+||+++++|++||..++.|+|++||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 35689999999999997765554443333322 222111 22456799999999999999999999999999999
Q ss_pred cCCceeEEeeccCCCCCccccCCC-CCCCCchhHHHHHHHHHhhcCCC-ceEEEEEeeeeeecceeeecCCCCC-CcceE
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMHGD-QNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG-QNLRV 247 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~G~-~~~~Giipr~~~~lF~~i~~~~~-~~~~v~vS~~EIyne~i~DLL~~~~-~~l~i 247 (1100)
+||||||||||||||||||||.|+ +...|||||++.+||.+|....+ ..|.|+|||+|||||.|+|||+|.. +.|.|
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~l 162 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLEL 162 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCcee
Confidence 999999999999999999999999 66789999999999999987754 4799999999999999999999987 68999
Q ss_pred EeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeec-CCCCCceEEeeeEEEec
Q 001324 248 REDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDH-GDEYDGVIFSQLNLIDL 325 (1100)
Q Consensus 248 ~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~-~~~~~~~~~s~L~lVDL 325 (1100)
++++ .|+||+||+++.|.++++++.+|..|..+|.+++|.||..|||||+||+|+|++... ..+......|+|+||||
T Consensus 163 re~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 163 REDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDL 242 (574)
T ss_pred eEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeec
Confidence 9999 799999999999999999999999999999999999999999999999999999433 33445678899999999
Q ss_pred CCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHH
Q 001324 326 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1100)
Q Consensus 326 AGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~e 404 (1100)
||||| .++++.|.|++|+.+||+||++||+||.+|++++..||||||||||+||||||||||+|+|||||+|+..+++|
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 99999 78999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhc
Q 001324 405 THNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKR 453 (1100)
Q Consensus 405 Tl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~ 453 (1100)
|++|||||+|||.|+|+|.+|+..+ .+.+..|+.+|..|+.++.....
T Consensus 323 TlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999655 46899999999999999987644
No 5
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-85 Score=790.21 Aligned_cols=354 Identities=51% Similarity=0.800 Sum_probs=331.7
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCC-------CcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNP-------ATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~ 171 (1100)
...|.|+|||||+++++...++...|...++..++..... ...|.||+||+++++|++||+..++|+|++||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4589999999999999877788888887776654433322 278999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCCCcceEEeCC
Q 001324 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~ 251 (1100)
|||+||||||||||||||||+|...+|||||+++.+||++|....++.|.|+|||+|||||.|+|||+|.++.|.|++|+
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred C-CcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC
Q 001324 252 Q-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1100)
Q Consensus 252 ~-g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~ 330 (1100)
. |++|.||+++.|.|+++++.+|..|+.+|+++.|.+|..|||||+||+|.|.+...... . ..++|+|||||||||
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS--S-RVSKLNLIDLAGSER 241 (675)
T ss_pred CCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc--c-hhheehhhhhhhhhh
Confidence 5 99999999999999999999999999999999999999999999999999999876544 2 678999999999998
Q ss_pred -cccccchhhhhhhhHHhhhHHHHHHHHHHhhcC-CCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHH
Q 001324 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1100)
Q Consensus 331 -~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~-~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~T 408 (1100)
.++++.|.|++||++||+||++||+||.+|+++ ...||||||||||||||++|||||+|+|||||+|+..+|+||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 679999999999999999999999999999998 466899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhccc
Q 001324 409 LKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGI 455 (1100)
Q Consensus 409 L~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~~~ 455 (1100)
|+||+|||.|++++.+|.+.....++..++++|..|+.++..++...
T Consensus 322 L~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999988999999999999987765
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.5e-84 Score=732.10 Aligned_cols=356 Identities=42% Similarity=0.644 Sum_probs=321.4
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ 175 (1100)
..++|+|+||+||++..|...+...+..+.+ .++++...+....|.||+||.|+++|++||..++.|+|++||.||||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 3568999999999999998777765544333 45665555556899999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCC---CCCchhHHHHHHHHHhhcCCC-ceEEEEEeeeeeecceeeecCCCCCCcceEEeCC
Q 001324 176 TVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm~G~~~---~~Giipr~~~~lF~~i~~~~~-~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~ 251 (1100)
||||||||||||||||.|... ..|||||++++||++|...+. ..|+|+|||||||+|+|+|||+|.+.++.|++|.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999999765 569999999999999987654 5999999999999999999999999999999996
Q ss_pred -CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC
Q 001324 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1100)
Q Consensus 252 -~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~ 330 (1100)
.++||+|+++..|.++++++.+|..|..+|+++.|+||.+|||||+||+|+|.+.+... ..+..|+|+||||||||+
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~--~~~~~gkLyLVDLaGSEk 242 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED--KRKLSGKLYLVDLAGSEK 242 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc--hhhccccEEEEEcccccc
Confidence 67899999999999999999999999999999999999999999999999999876543 457889999999999998
Q ss_pred -cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHH
Q 001324 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1100)
Q Consensus 331 -~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL 409 (1100)
+|+|+.|.-+.|+++||+||+|||+||++|++|..+|||||||||||||||+|||||+|.+|+|++|+..+..||.+||
T Consensus 243 vsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl 322 (607)
T KOG0240|consen 243 VSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTL 322 (607)
T ss_pred cCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccch
Confidence 8999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccChHHHHHHHHHH----------HHHHHHHHHHHhccc
Q 001324 410 KFASRAKRVEIYASRNKIIDEKSLIKKYQRE----------ISSLKEELDQLKRGI 455 (1100)
Q Consensus 410 ~fa~rak~i~~~~~~n~~~~~~~~~~~lq~e----------I~~Lk~eL~qlk~~~ 455 (1100)
+|+.|||.|+|.+.+|...+.+.+.+.|..+ +.++...+..|+.+-
T Consensus 323 ~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E 378 (607)
T KOG0240|consen 323 RFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGE 378 (607)
T ss_pred hhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999998888887776554 344444455555443
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-82 Score=726.11 Aligned_cols=352 Identities=40% Similarity=0.631 Sum_probs=323.0
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC---------CCCcceecceecCCC-------CChhHHHhhhh
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY---------NPATAYAFDRVFGPH-------ANSQEVYDVAA 162 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---------~~~~~f~FD~Vf~~~-------~~q~~vy~~~~ 162 (1100)
..+|+|+|||||++.+|+....++++.+++...+.... ++.++|.||++|++. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 56899999999999999999988888888775544332 456899999999875 57999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc--CCCceEEEEEeeeeeecceeeecCCC
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDP 240 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIyne~i~DLL~~ 240 (1100)
..+|+++|+|||+||||||||||||||||+|..++||||||.|..||..|.. .+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 9999999999999999999999999999999999999999999999999975 45679999999999999999999999
Q ss_pred CC--CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEee--cCCCCCce
Q 001324 241 TG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSD--HGDEYDGV 315 (1100)
Q Consensus 241 ~~--~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~--~~~~~~~~ 315 (1100)
.+ +.|+++++. .|.||.||++..|.|++++-.+|..|+++|+++.|+||..|||||+||.|.|.+.- ...+..+-
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 75 679999998 79999999999999999999999999999999999999999999999999998863 33344566
Q ss_pred EEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhc-----CCCCCcCCCCCccchhhcccCCCCccc
Q 001324 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRLLQSSLSGHGHV 389 (1100)
Q Consensus 316 ~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~-----~~~~~iPyRdSkLT~lL~dsLgGns~t 389 (1100)
+.|+|.||||||||| +++++.|.|++||++||+||++||.||++|++ |+..+||||||.|||||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 789999999999999 78999999999999999999999999999987 345699999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Q 001324 390 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQL 451 (1100)
Q Consensus 390 ~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~ql 451 (1100)
+||+||||++.+|+|||+|||||.|||+|+|++.+|+..+. ..|++++.|+..|+.+|.+.
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpna-rvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA-RVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchH-HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999986554 47899999999999999873
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.9e-79 Score=697.37 Aligned_cols=318 Identities=44% Similarity=0.675 Sum_probs=286.9
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ 178 (1100)
++|+|+|||||+.+.|...+...++.. ++..++.. ..+.+.|.||+||+++++|++||+.++.|+|+++|+|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWH-SHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEee-CCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 479999999999999876555444433 33444433 2346889999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCCCCC--------CCCchhHHHHHHHHHhhcC-----CCceEEEEEeeeeeecceeeecCCCCCCcc
Q 001324 179 AYGVTSSGKTHTMHGDQN--------SPGIIPLAIKDVFSIIQDT-----PGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1100)
Q Consensus 179 aYGqtgSGKT~Tm~G~~~--------~~Giipr~~~~lF~~i~~~-----~~~~~~v~vS~~EIyne~i~DLL~~~~~~l 245 (1100)
|||||||||||||+|+.. ++|||||++++||..+... .+..|.|+|||+|||||+|||||++....+
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 999999999999999763 6799999999999998643 346899999999999999999999988899
Q ss_pred eEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEe
Q 001324 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1100)
Q Consensus 246 ~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVD 324 (1100)
.|++++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|..............|+|+|||
T Consensus 160 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VD 239 (337)
T cd01373 160 KIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVD 239 (337)
T ss_pred eEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEE
Confidence 999998 6889999999999999999999999999999999999999999999999999987665544466789999999
Q ss_pred cCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhc---CCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCC
Q 001324 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE---GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1100)
Q Consensus 325 LAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~---~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~ 400 (1100)
|||||| .++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||+|+|||||+|+|||||+|+..
T Consensus 240 LAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~ 319 (337)
T cd01373 240 LAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSK 319 (337)
T ss_pred CCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcc
Confidence 999999 55778999999999999999999999999975 34679999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 001324 401 SMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 401 ~~~eTl~TL~fa~rak~i 418 (1100)
+++||++||+||.|||+|
T Consensus 320 ~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 320 CFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cHHHHHHHHHHHHHhhcC
Confidence 999999999999999987
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.5e-78 Score=689.75 Aligned_cols=318 Identities=44% Similarity=0.705 Sum_probs=291.3
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeC-CCEEEecCC-------------CCCcceecceecCCCCChhHHHhhhhHHHH
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYAD-GDKIVRNEY-------------NPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv 166 (1100)
+|+|+|||||+.+.|...+...+|... +..++.... ...+.|.||+||+++++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999877776666544 344443221 135689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC-CceEEEEEeeeeeecceeeecCCCCCCcc
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIyne~i~DLL~~~~~~l 245 (1100)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... +..|.|+|||+|||||+|+|||++....+
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999999998765 67899999999999999999999988899
Q ss_pred eEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-CCCceEEeeeEEE
Q 001324 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLI 323 (1100)
Q Consensus 246 ~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~~~~~~~s~L~lV 323 (1100)
.|++++ .|++|.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|.|.+.+.+. .......|+|+||
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~V 240 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEE
Confidence 999999 67899999999999999999999999999999999999999999999999999887653 1345678999999
Q ss_pred ecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCC--CCCcCCCCCccchhhcccCCCCccceeEEeeCCCCC
Q 001324 324 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1100)
Q Consensus 324 DLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~--~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~ 400 (1100)
||||||| .+++..|.+++|+.+||+||++|++||.+|+.++ ..||||||||||+||+|+|||||+|+||+||||+..
T Consensus 241 DLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~ 320 (338)
T cd01370 241 DLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSS 320 (338)
T ss_pred ECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchh
Confidence 9999999 5678899999999999999999999999999876 379999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 001324 401 SMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 401 ~~~eTl~TL~fa~rak~i 418 (1100)
+++||++||+||+|||+|
T Consensus 321 ~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 321 HYEETHNTLKYANRAKNI 338 (338)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=5.1e-76 Score=674.06 Aligned_cols=312 Identities=40% Similarity=0.634 Sum_probs=281.5
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecC-------------CCCCcceecceecCCCCChhHHHhhhhHHH
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNE-------------YNPATAYAFDRVFGPHANSQEVYDVAARPV 165 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~l 165 (1100)
++|+|+|||||+.+.|...+...+|. .++.++.... ......|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 47999999999999987665544443 4455554332 123568999999999999999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCC---
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--- 242 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~--- 242 (1100)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999999999999999999999999875 99999999999999999998754
Q ss_pred ---CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC------CC
Q 001324 243 ---QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EY 312 (1100)
Q Consensus 243 ---~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~------~~ 312 (1100)
..+.|++++ .|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..... ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999998 57899999999999999999999999999999999999999999999999998875432 12
Q ss_pred CceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcC-----CCCCcCCCCCccchhhcccCCCC
Q 001324 313 DGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----KASHVPYRDSKLTRLLQSSLSGH 386 (1100)
Q Consensus 313 ~~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~-----~~~~iPyRdSkLT~lL~dsLgGn 386 (1100)
.....|+|+||||||||+ .++++.|.+++|+.+||+||++|++||.+|++. +..||||||||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 456789999999999999 567899999999999999999999999999873 46799999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001324 387 GHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1100)
Q Consensus 387 s~t~~I~~isp~~~~~~eTl~TL~fa~rak 416 (1100)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.5e-75 Score=674.54 Aligned_cols=326 Identities=39% Similarity=0.606 Sum_probs=298.9
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC-------CCCcceecceecCCC-------CChhHHHhhhhHHH
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-------NPATAYAFDRVFGPH-------ANSQEVYDVAARPV 165 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~FD~Vf~~~-------~~q~~vy~~~~~~l 165 (1100)
++|+|+||+||++..|...+...++..++..+.+... .....|.||+|||++ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999888887777777766554433 245689999999999 99999999999999
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC--CceEEEEEeeeeeecceeeecCCCCC-
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPTG- 242 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~--~~~~~v~vS~~EIyne~i~DLL~~~~- 242 (1100)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||+|||||++..
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 999999999999999999999999999999999999999999999997654 46899999999999999999999874
Q ss_pred --CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC--CCCceEE
Q 001324 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--EYDGVIF 317 (1100)
Q Consensus 243 --~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~--~~~~~~~ 317 (1100)
..+.|++++ .|++|.|++++.|.|+++++.+|..|.++|.+++|.+|..|||||+||+|.|.+..... .......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 689999998 68999999999999999999999999999999999999999999999999999876543 2345678
Q ss_pred eeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcC-------CCCCcCCCCCccchhhcccCCCCccc
Q 001324 318 SQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-------KASHVPYRDSKLTRLLQSSLSGHGHV 389 (1100)
Q Consensus 318 s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~-------~~~~iPyRdSkLT~lL~dsLgGns~t 389 (1100)
|+|+||||||||+ .+++..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+||+|+||||++|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 9999999999998 557788999999999999999999999999864 35799999999999999999999999
Q ss_pred eeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 001324 390 SLICTVTPASSSMEETHNTLKFASRAKRVEIYASRN 425 (1100)
Q Consensus 390 ~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n 425 (1100)
+||+||+|...+++||++||+||+||++|++.|++|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999875
No 12
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=6.6e-74 Score=655.04 Aligned_cols=319 Identities=42% Similarity=0.694 Sum_probs=291.6
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEee--CCCEEEecCC-----CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G 172 (1100)
++|+|+|||||+++.|...+...++.. +...+.+... ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 479999999999999987776555544 3334433322 345689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCCC---CCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCC-CcceEE
Q 001324 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR 248 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~-~~l~i~ 248 (1100)
||+||||||+|||||||||+|+.. .+|||||++++||..+...++..|.|+|||+|||||+|+|||++.. ..+.|+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999887 8999999999999999888778999999999999999999999875 689999
Q ss_pred eCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-CCCceEEeeeEEEecC
Q 001324 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLIDLA 326 (1100)
Q Consensus 249 e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~~~~~~~s~L~lVDLA 326 (1100)
+++ .|++|.|++++.|.|++++..+|..|.++|.++.|.+|..|||||+||+|+|+..+... ....+..|+|+|||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLA 240 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECC
Confidence 998 48899999999999999999999999999999999999999999999999999877643 3345678999999999
Q ss_pred CCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHH
Q 001324 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1100)
Q Consensus 327 GsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eT 405 (1100)
|||+ .+++..|.+++|+.+||+||.+|++||.+|+.++..|||||+||||+||+|+|||||+|+||+||+|...+++||
T Consensus 241 GsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eT 320 (333)
T cd01371 241 GSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDET 320 (333)
T ss_pred CCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 9998 567788999999999999999999999999998878999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 001324 406 HNTLKFASRAKRV 418 (1100)
Q Consensus 406 l~TL~fa~rak~i 418 (1100)
++||+||+|||+|
T Consensus 321 l~TL~fa~r~r~I 333 (333)
T cd01371 321 LSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999987
No 13
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.8e-74 Score=652.55 Aligned_cols=317 Identities=62% Similarity=0.974 Sum_probs=293.6
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEe
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~a 179 (1100)
+|+|+||+||+...|.. +...+|..+++ +++..+....+.|.||+||+++++|++||+.++.|+|+++++|||+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 69999999999999873 44566665555 67666666788999999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCCCcceEEeCCC-CcEeeC
Q 001324 180 YGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ-GTYVEG 258 (1100)
Q Consensus 180 YGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~~-g~~v~g 258 (1100)
||+|||||||||+|+..++|||||++++||..+...++..|.|+|||+|||||+|||||+|....+++++++. |++|.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 9999999999999999999999999999999998888889999999999999999999999988999999985 899999
Q ss_pred ceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-CCCceEEeeeEEEecCCCCCcccccch
Q 001324 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNLIDLAGSESSKTETTG 337 (1100)
Q Consensus 259 l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~~~~~~~s~L~lVDLAGsE~~~~~~~g 337 (1100)
++++.|.|+++++.+|..|.++|++++|.+|..|||||+||+|+|.+...+. .......|+|+||||||||+......|
T Consensus 160 l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~~~ 239 (321)
T cd01374 160 LTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTGAG 239 (321)
T ss_pred ceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999887554 235677899999999999995433389
Q ss_pred hhhhhhhHHhhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001324 338 LRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1100)
Q Consensus 338 ~r~~E~~~IN~SL~~L~~vI~~L~~~~-~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~rak 416 (1100)
.+++|+.+||+||.+|++||.+|+.++ ..|||||+||||+||+|+|||||+|+|||||+|...+++||++||+||+||+
T Consensus 240 ~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~ 319 (321)
T cd01374 240 ERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAK 319 (321)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHh
Confidence 999999999999999999999999976 6799999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 001324 417 RV 418 (1100)
Q Consensus 417 ~i 418 (1100)
+|
T Consensus 320 ~i 321 (321)
T cd01374 320 KV 321 (321)
T ss_pred cC
Confidence 86
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.5e-74 Score=653.89 Aligned_cols=309 Identities=37% Similarity=0.597 Sum_probs=281.3
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEecCC---------CCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRNEY---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~~~---------~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
++|+|+|||||+.+.|...+...++..++. ++.+... .....|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999999987766666555554 4443311 124689999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCCCcceEEe
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVRE 249 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e 249 (1100)
++|||+||||||||||||||||+|+..++|||||++++||+.+...+ ..|.|+|||+|||||.|+|||++ ...+.|++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999999999999999999999998665 68999999999999999999998 56799999
Q ss_pred CC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCC
Q 001324 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGS 328 (1100)
Q Consensus 250 ~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGs 328 (1100)
++ .|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|..... ....|+|+|||||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-----~~~~s~l~~vDLAGs 233 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-----NKLLGKLSFIDLAGS 233 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-----CeeEEEEEEeecCCc
Confidence 98 568999999999999999999999999999999999999999999999999998664 356799999999999
Q ss_pred CCcc--cccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHH
Q 001324 329 ESSK--TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1100)
Q Consensus 329 E~~~--~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl 406 (1100)
|+.. ....|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+|||||+|+..+++||+
T Consensus 234 E~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 234 ERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred cccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 9843 34578999999999999999999999999876 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 001324 407 NTLKFASRAK 416 (1100)
Q Consensus 407 ~TL~fa~rak 416 (1100)
+||+||+|+|
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.8e-73 Score=657.14 Aligned_cols=325 Identities=39% Similarity=0.639 Sum_probs=293.6
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCC----CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~----~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~ 173 (1100)
.+|+|+||+||+...|...+...++..++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999997776666555443 44444322 2467899999999999999999999999999999999
Q ss_pred ceeEEeeccCCCCCccccCCCCC-----------CCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCC-
Q 001324 174 NGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT- 241 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~G~~~-----------~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~- 241 (1100)
|+||||||||||||||||+|+.. .+|||||++.+||+.+... +..|.|+|||+|||||+|||||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 99999999999999999999843 4899999999999999866 6789999999999999999999986
Q ss_pred --CCcceEEeC---CCCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-CCCce
Q 001324 242 --GQNLRVRED---AQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGV 315 (1100)
Q Consensus 242 --~~~l~i~e~---~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~~~~~ 315 (1100)
..+++++++ ..|++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+..... .....
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~ 240 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV 240 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence 578999999 368999999999999999999999999999999999999999999999999999876442 22445
Q ss_pred EEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEe
Q 001324 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1100)
Q Consensus 316 ~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~ 394 (1100)
..|+|+||||||||+ .+.++.|.+.+|+.+||+||.+|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+|
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 689999999999998 5677888999999999999999999999999865 69999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001324 395 VTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1100)
Q Consensus 395 isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~ 426 (1100)
|+|+..+++||++||+||+||++|+|.|.+|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999998885
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.5e-73 Score=646.50 Aligned_cols=317 Identities=44% Similarity=0.694 Sum_probs=292.1
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ 178 (1100)
++|+|+|||||+.+.|...+...++. .++.++.+......+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 58999999999999987666555544 44446666665667899999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCCCCC---CCCchhHHHHHHHHHhhcCC-CceEEEEEeeeeeecceeeecCCCCCCcceEEeCC-CC
Q 001324 179 AYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QG 253 (1100)
Q Consensus 179 aYGqtgSGKT~Tm~G~~~---~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~-~g 253 (1100)
|||+|||||||||+|+.. .+|||||++++||+.+.... +..|.|+|||+|||||.|+|||++....+.+++++ .|
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 161 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRG 161 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCC
Confidence 999999999999999988 89999999999999997654 45899999999999999999999988899999998 68
Q ss_pred cEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC-cc
Q 001324 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SK 332 (1100)
Q Consensus 254 ~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~-~~ 332 (1100)
++|+|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|.|.+.+... .....|+|+||||||||+ .+
T Consensus 162 ~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~s~l~~VDLAGsE~~~~ 239 (325)
T cd01369 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET--GSKKRGKLFLVDLAGSEKVSK 239 (325)
T ss_pred EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC--CCEEEEEEEEEECCCCCcccc
Confidence 999999999999999999999999999999999999999999999999998876433 345789999999999998 56
Q ss_pred cccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHH
Q 001324 333 TETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 412 (1100)
Q Consensus 333 ~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa 412 (1100)
+++.|.+++|+..||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||
T Consensus 240 ~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a 319 (325)
T cd01369 240 TGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFG 319 (325)
T ss_pred cCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHH
Confidence 78899999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred HHhccc
Q 001324 413 SRAKRV 418 (1100)
Q Consensus 413 ~rak~i 418 (1100)
+|||+|
T Consensus 320 ~r~~~i 325 (325)
T cd01369 320 ARAKTI 325 (325)
T ss_pred HHhhcC
Confidence 999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.2e-72 Score=640.96 Aligned_cols=309 Identities=35% Similarity=0.575 Sum_probs=279.4
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCC-----CEEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYADG-----DKIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~-----~~~~~~~~---~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G 172 (1100)
+|+|+|||||+.+.|......+.+ .++ ..+..... ...+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~-~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRG-IDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEE-eCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999988543323323 232 23433322 245789999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCCCcceEEeCC-
Q 001324 173 VNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA- 251 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~- 251 (1100)
||+||||||||||||||||+|+..++|||||++++||+.++... ..|.|+|||+|||||.|||||++....+.|++++
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 99999999999999999999999999999999999999887653 6799999999999999999999988889999997
Q ss_pred CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC-
Q 001324 252 QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES- 330 (1100)
Q Consensus 252 ~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~- 330 (1100)
.|++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+ ....|+|+||||||||+
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----~~~~s~l~~VDLAGsE~~ 234 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----IQLEGKLNLIDLAGSEDN 234 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC----ceEEEEEEEEECCCCCcc
Confidence 5679999999999999999999999999999999999999999999999999887542 35789999999999998
Q ss_pred cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001324 331 SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410 (1100)
Q Consensus 331 ~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~ 410 (1100)
.+++..|.+++|+..||+||++|++||.+|+.+. .|||||+|+||+||+|+|||||+|+|||||+|...+++||++||+
T Consensus 235 ~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~ 313 (319)
T cd01376 235 RRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLN 313 (319)
T ss_pred cccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHH
Confidence 4678899999999999999999999999999865 699999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 001324 411 FASRAK 416 (1100)
Q Consensus 411 fa~rak 416 (1100)
||+|||
T Consensus 314 fa~r~~ 319 (319)
T cd01376 314 FASRSK 319 (319)
T ss_pred HHHhhC
Confidence 999986
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=3e-72 Score=641.20 Aligned_cols=312 Identities=41% Similarity=0.625 Sum_probs=282.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe-----------cCCCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYADGDKIVR-----------NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~-----------~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
+|+|+||+||+...+. ..+.+..++..+.. +.......|.||+||++ ++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQG---SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCC---ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 5999999999987442 23444455444222 12234567999999999 999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCC---CCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCC----
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG---- 242 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~G~~---~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~---- 242 (1100)
++|||+||||||||||||||||+|+. .++|||||++++||..++..++..|.|+|||+|||||+|||||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~ 156 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALE 156 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccc
Confidence 99999999999999999999999976 47899999999999999988888999999999999999999999874
Q ss_pred --CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEee
Q 001324 243 --QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQ 319 (1100)
Q Consensus 243 --~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~ 319 (1100)
+.+.|++++ .|++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|.|.+............|+
T Consensus 157 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~ 236 (334)
T cd01375 157 SLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSK 236 (334)
T ss_pred cCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEE
Confidence 579999997 67899999999999999999999999999999999999999999999999999886655556678899
Q ss_pred eEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCC
Q 001324 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPA 398 (1100)
Q Consensus 320 L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~ 398 (1100)
|+||||||||+ .+++..|..++|+.+||+||++|++||.+|+.++..||||||||||+||+|+|||||+|+|||||+|+
T Consensus 237 l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~ 316 (334)
T cd01375 237 LNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVE 316 (334)
T ss_pred EEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 99999999999 56788899999999999999999999999999876899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 001324 399 SSSMEETHNTLKFASRAK 416 (1100)
Q Consensus 399 ~~~~~eTl~TL~fa~rak 416 (1100)
..+++||++||+||+|++
T Consensus 317 ~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 317 PSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhHHHHHHHHHHHHhcC
Confidence 999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=5.1e-72 Score=642.99 Aligned_cols=316 Identities=42% Similarity=0.667 Sum_probs=287.1
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeC--CCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEE
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYAD--GDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVF 178 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~--~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ 178 (1100)
+|+|+||+||+.+.|...+....+..+ ...+... ..+.|.||+||+++++|++||+.++.|+|+++++|||+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG---TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec---CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 699999999999999877665555433 2344432 25789999999999999999999999999999999999999
Q ss_pred eeccCCCCCccccCCCC------CCCCchhHHHHHHHHHhhcCCC-ceEEEEEeeeeeecceeeecCCCC---CCcceEE
Q 001324 179 AYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPT---GQNLRVR 248 (1100)
Q Consensus 179 aYGqtgSGKT~Tm~G~~------~~~Giipr~~~~lF~~i~~~~~-~~~~v~vS~~EIyne~i~DLL~~~---~~~l~i~ 248 (1100)
|||||||||||||+|+. .++|||||++++||+.++.... ..|.|.|||+|||||+|||||++. ...+.|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999974 5799999999999999987654 789999999999999999999986 4789999
Q ss_pred eCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC--------CCCceEEee
Q 001324 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD--------EYDGVIFSQ 319 (1100)
Q Consensus 249 e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~--------~~~~~~~s~ 319 (1100)
+++ .|++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+. .......|+
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~ 238 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK 238 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence 998 67899999999999999999999999999999999999999999999999999887641 224567899
Q ss_pred eEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCC--CCcCCCCCccchhhcccCCCCccceeEEeeC
Q 001324 320 LNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSLICTVT 396 (1100)
Q Consensus 320 L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~--~~iPyRdSkLT~lL~dsLgGns~t~~I~~is 396 (1100)
|+||||||||+ .+++..|.+++|+..||+||.+|++||.+|+.+.. .|||||+||||+||+|+||||++|+||+||+
T Consensus 239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs 318 (341)
T cd01372 239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS 318 (341)
T ss_pred EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 99999999998 56788999999999999999999999999998763 7999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccc
Q 001324 397 PASSSMEETHNTLKFASRAKRVE 419 (1100)
Q Consensus 397 p~~~~~~eTl~TL~fa~rak~i~ 419 (1100)
|...+++||++||+||+|||+|+
T Consensus 319 p~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 319 PADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.9e-70 Score=625.52 Aligned_cols=318 Identities=40% Similarity=0.623 Sum_probs=288.8
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCC-CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEY-NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~-~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ 175 (1100)
+|+|+|+||+||+.+.|......++...++ .++..... ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 478999999999999876333334333333 55555443 567789999999999999999997 58999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC--CceEEEEEeeeeeecceeeecCCCC---CCcceEEeC
Q 001324 176 TVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT---GQNLRVRED 250 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~--~~~~~v~vS~~EIyne~i~DLL~~~---~~~l~i~e~ 250 (1100)
||||||+|||||||||+|+..++|||||++++||+.++... +..|.|+|||+|||||+|+|||++. ...+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 99999999999999999999999999999999999998664 4789999999999999999999986 678999999
Q ss_pred C-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCC
Q 001324 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1100)
Q Consensus 251 ~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE 329 (1100)
+ .|++|.|++++.|.|++|+..+|..|..+|.++.|.+|..|||||+||+|.|.+.+.. ......|+|+||||||||
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~--~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ--TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC--CCcEEEEEEEEEECCCCc
Confidence 9 6789999999999999999999999999999999999999999999999999987654 345678999999999999
Q ss_pred C-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHH
Q 001324 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1100)
Q Consensus 330 ~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~T 408 (1100)
+ .+.+..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+||||++|+|||||||...+++||++|
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 8 557888999999999999999999999999987 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 001324 409 LKFASRAKRVEI 420 (1100)
Q Consensus 409 L~fa~rak~i~~ 420 (1100)
|+||+||++|++
T Consensus 317 L~~a~~~~~i~~ 328 (329)
T cd01366 317 LRFASRVRSVEL 328 (329)
T ss_pred HHHHHHhhcccC
Confidence 999999999976
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.7e-69 Score=616.22 Aligned_cols=325 Identities=46% Similarity=0.700 Sum_probs=297.8
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCCC---EEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYADGD---KIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~---~~~~~~~---~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n 174 (1100)
+|+|+|||||+...|...+....|..++. .+..... .....|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 59999999999999877766666655433 4544332 35578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC-CceEEEEEeeeeeecceeeecCCCCCCcceEEeCCC-
Q 001324 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQ- 252 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~~- 252 (1100)
+|||+||+|||||||||+|+..++|||||++++||+.+.... +..|.|+|||+|||||+|+|||++....+.|++++.
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 999999999999999999999999999999999999997654 568999999999999999999999999999999985
Q ss_pred CcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC-c
Q 001324 253 GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-S 331 (1100)
Q Consensus 253 g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~-~ 331 (1100)
|++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.|.+...+........|+|+||||||+|+ .
T Consensus 161 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~ 240 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERAS 240 (335)
T ss_pred CEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccc
Confidence 789999999999999999999999999999999999999999999999999987555555667899999999999998 4
Q ss_pred ccccchhhhhhhhHHhhhHHHHHHHHHHhhcC-CCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHH
Q 001324 332 KTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLK 410 (1100)
Q Consensus 332 ~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~-~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~ 410 (1100)
+.++.|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||+|...+++||++||+
T Consensus 241 ~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~ 320 (335)
T smart00129 241 KTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLR 320 (335)
T ss_pred cccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHH
Confidence 56788999999999999999999999999985 56799999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccc
Q 001324 411 FASRAKRVEIYASRN 425 (1100)
Q Consensus 411 fa~rak~i~~~~~~n 425 (1100)
||+++++|++.|++|
T Consensus 321 ~a~~~~~i~~~p~~~ 335 (335)
T smart00129 321 FASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHhhcccCCCcC
Confidence 999999999999765
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-70 Score=661.03 Aligned_cols=325 Identities=39% Similarity=0.552 Sum_probs=289.1
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC--CEEEecCCCCC----cceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADG--DKIVRNEYNPA----TAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~~~~~~----~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l 170 (1100)
.-+|+|+|+|||||+.+.+.......+...++ ..++....... ..|.||+||+|.++|++||. -+.|+|.++|
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~-e~~~lv~S~l 389 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFE-EVSPLVQSAL 389 (670)
T ss_pred HhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHH-HHHHHHHHHh
Confidence 45799999999999999987653333333332 22332222222 24999999999999999998 6789999999
Q ss_pred cCCceeEEeeccCCCCCccccCC-CCCCCCchhHHHHHHHHHhhcCC-CceEEEEEeeeeeecceeeecCCCC--CCcce
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMHG-DQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPT--GQNLR 246 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~G-~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIyne~i~DLL~~~--~~~l~ 246 (1100)
+|||+||||||||||||||||.| +++++|||||++.+||..+.... ++.|.+.+||+|||||.|+|||++. ...+.
T Consensus 390 DGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~ 469 (670)
T KOG0239|consen 390 DGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLE 469 (670)
T ss_pred cCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccccccccee
Confidence 99999999999999999999999 79999999999999999997543 6899999999999999999999987 47899
Q ss_pred EEeCCC-CcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEec
Q 001324 247 VREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDL 325 (1100)
Q Consensus 247 i~e~~~-g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDL 325 (1100)
|++++. +.+|.+++.+.|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|...+. ..+....+.|+||||
T Consensus 470 I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~--~t~~~~~g~l~LVDL 547 (670)
T KOG0239|consen 470 IVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE--LTGIRVTGVLNLVDL 547 (670)
T ss_pred EEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc--CcccccccceeEeec
Confidence 999984 57899999999999999999999999999999999999999999999999987643 334567799999999
Q ss_pred CCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHH
Q 001324 326 AGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEE 404 (1100)
Q Consensus 326 AGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~e 404 (1100)
||||| .+++.+|.|++|+.+||+||++||.||.+|+. +..||||||||||+||+|+|||++||.|+++|||...++.|
T Consensus 548 AGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~E 626 (670)
T KOG0239|consen 548 AGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFE 626 (670)
T ss_pred ccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhh
Confidence 99999 77999999999999999999999999999998 55799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccc
Q 001324 405 THNTLKFASRAKRVEIYASRN 425 (1100)
Q Consensus 405 Tl~TL~fa~rak~i~~~~~~n 425 (1100)
|+++|+||.|++.+...+..-
T Consensus 627 tl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 627 TLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred hhhccchHHHhhceecccccc
Confidence 999999999999998777653
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.1e-67 Score=602.55 Aligned_cols=315 Identities=46% Similarity=0.732 Sum_probs=287.5
Q ss_pred CEEEEEEeCCCChhhhhcCCeEEEeeCC-CEEEecCC-----CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001324 101 SISVTIRFRPLSEREFQRGDEIAWYADG-DKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~~~-----~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n 174 (1100)
+|+|+||+||+...|.. +...+|..++ +.+.+... .....|.||+||+++++|++||+.++.|+|+++++|||
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 59999999999987733 3344444444 66655442 23578999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC--CceEEEEEeeeeeecceeeecCCCC--CCcceEEeC
Q 001324 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP--GREFLLRVSYLEIYNEVINDLLDPT--GQNLRVRED 250 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~--~~~~~v~vS~~EIyne~i~DLL~~~--~~~l~i~e~ 250 (1100)
+||||||+|||||||||+|+..++|||||++++||..+.... ...|.|+|||+|||+|+|+|||++. ...+.|+++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 999999999999999999999999999999999999998765 5789999999999999999999997 889999999
Q ss_pred C-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCC
Q 001324 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1100)
Q Consensus 251 ~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE 329 (1100)
+ .|++|.|++++.|.|+++++.+|..|..+|.++.|.+|..|||||+||+|.|..............|+|+||||||+|
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 9 688999999999999999999999999999999999999999999999999999876654445788999999999999
Q ss_pred C-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001324 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHN 407 (1100)
Q Consensus 330 ~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~-~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~ 407 (1100)
+ .+.+..+.+.+|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+||+||+|...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 8 4567889999999999999999999999999876 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 001324 408 TLKFASRAK 416 (1100)
Q Consensus 408 TL~fa~rak 416 (1100)
||+||+|||
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999986
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-68 Score=595.32 Aligned_cols=320 Identities=36% Similarity=0.564 Sum_probs=281.2
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecC---------CCCCcceecceecCCCCChhHHHhhhhHHHH
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNE---------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~---------~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv 166 (1100)
...+.|.|+||-||++..|....+..++.+ ..+.+++.. +-....|.||++||+.++++.||..+++|||
T Consensus 205 v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 205 VNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred CccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 345789999999999999987766555443 344433322 2245679999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCCC------CCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecC
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQN------SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLL 238 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~------~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL 238 (1100)
..+|+|.-+|+||||||||||||||.|+-. ..||..++.+|+|..+..- ....+.|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 999999999999999999999999998743 3599999999999998743 24578999999999999999999
Q ss_pred CCCCCcceEEeCCC-CcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEE
Q 001324 239 DPTGQNLRVREDAQ-GTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIF 317 (1100)
Q Consensus 239 ~~~~~~l~i~e~~~-g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 317 (1100)
++ ...|.+.+|.+ .+.|.||++..|.+.++++.+|..|+..|+++.|..|..|||||+||+|.+.... ....+
T Consensus 365 ~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-----~~k~h 438 (676)
T KOG0246|consen 365 ND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-----EFKLH 438 (676)
T ss_pred cc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC-----cceeE
Confidence 97 55799999985 5789999999999999999999999999999999999999999999999997532 24578
Q ss_pred eeeEEEecCCCCCc--ccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCC-CccceeEEe
Q 001324 318 SQLNLIDLAGSESS--KTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSG-HGHVSLICT 394 (1100)
Q Consensus 318 s~L~lVDLAGsE~~--~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgG-ns~t~~I~~ 394 (1100)
|+++||||||+||+ .+.+..+...||+.|||||++|..||.+|..++. |+|||.||||.+|+|||-| ||+|+||+|
T Consensus 439 GKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~-H~PFR~SKLTqVLRDSFIGenSrTcMIA~ 517 (676)
T KOG0246|consen 439 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKS-HLPFRGSKLTQVLRDSFIGENSRTCMIAT 517 (676)
T ss_pred eEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCC-CCCchhhhHHHHHHHhhcCCCCceEEEEE
Confidence 99999999999994 3566677788999999999999999999988764 9999999999999999999 999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001324 395 VTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1100)
Q Consensus 395 isp~~~~~~eTl~TL~fa~rak~i~~~~~ 423 (1100)
|||....++.||||||||+|+|.......
T Consensus 518 ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 518 ISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred eCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999998865443
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.5e-68 Score=611.98 Aligned_cols=312 Identities=46% Similarity=0.724 Sum_probs=278.8
Q ss_pred EeCCCChhhhhcCCeEEEeeCCC----EEE---ecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEe
Q 001324 107 RFRPLSEREFQRGDEIAWYADGD----KIV---RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFA 179 (1100)
Q Consensus 107 RvRP~~~~E~~~~~~~~~~~~~~----~~~---~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~a 179 (1100)
||||+++.|...+....+..... ... .........|.||+||+++++|++||+.++.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999998888776655421 111 11233456899999999999999999999999999999999999999
Q ss_pred eccCCCCCccccCCC--CCCCCchhHHHHHHHHHhhcCCC---ceEEEEEeeeeeecceeeecCCCC----CCcceEEeC
Q 001324 180 YGVTSSGKTHTMHGD--QNSPGIIPLAIKDVFSIIQDTPG---REFLLRVSYLEIYNEVINDLLDPT----GQNLRVRED 250 (1100)
Q Consensus 180 YGqtgSGKT~Tm~G~--~~~~Giipr~~~~lF~~i~~~~~---~~~~v~vS~~EIyne~i~DLL~~~----~~~l~i~e~ 250 (1100)
||+|||||||||+|+ ..++|||||++++||..+..... ..|.|+|||+|||||.|+|||++. ...+.|+++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 89999999999999999987554 489999999999999999999987 357999999
Q ss_pred CC-C-cEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCC--ceEEeeeEEEecC
Q 001324 251 AQ-G-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD--GVIFSQLNLIDLA 326 (1100)
Q Consensus 251 ~~-g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~--~~~~s~L~lVDLA 326 (1100)
+. | ++|.|++++.|.++++++.+|..|.++|.++.|.+|..|||||+||+|.|.+........ ....|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 95 6 899999999999999999999999999999999999999999999999999988765543 2578999999999
Q ss_pred CCCCcc-ccc-chhhhhhhhHHhhhHHHHHHHHHHhhcC-CCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHH
Q 001324 327 GSESSK-TET-TGLRRKEGSYINKSLLTLGTVIGKLSEG-KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1100)
Q Consensus 327 GsE~~~-~~~-~g~r~~E~~~IN~SL~~L~~vI~~L~~~-~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~ 403 (1100)
|+|+.+ ... .+.+.+|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 999844 443 4888999999999999999999999997 5679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 001324 404 ETHNTLKFASRAKRV 418 (1100)
Q Consensus 404 eTl~TL~fa~rak~i 418 (1100)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-65 Score=609.07 Aligned_cols=339 Identities=38% Similarity=0.565 Sum_probs=298.9
Q ss_pred eCCCChhhhhcCCeEEEe--eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCC
Q 001324 108 FRPLSEREFQRGDEIAWY--ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSS 185 (1100)
Q Consensus 108 vRP~~~~E~~~~~~~~~~--~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgS 185 (1100)
|||+...|...|+..++. +....++.+ ....|+||+||+....|.++|+.++.|+++.+|.|||+||+|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 699999998888765543 333344433 346799999999999999999999999999999999999999999999
Q ss_pred CCccccCCC----CCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCC--CcceEEeCCCC-cEeeC
Q 001324 186 GKTHTMHGD----QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDAQG-TYVEG 258 (1100)
Q Consensus 186 GKT~Tm~G~----~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~--~~l~i~e~~~g-~~v~g 258 (1100)
||||||.+. ....|||||+++++|..|.......|.|.|||+|||++.|+|||.|.. .++.+++ +.| +.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 999999887 344699999999999999988778899999999999999999999654 4577788 654 88999
Q ss_pred ceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC-cccccch
Q 001324 259 IKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTG 337 (1100)
Q Consensus 259 l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~-~~~~~~g 337 (1100)
++++.|.+..+++..|..|...|++++|+||..|||||+||+|.+++...... .....++|+||||||||| .+++++|
T Consensus 157 lte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~-~s~~~sKlhlVDLAGSER~kkT~a~g 235 (913)
T KOG0244|consen 157 LTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK-RSSFCSKLHLVDLAGSERVKKTKAEG 235 (913)
T ss_pred ehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-cchhhhhhheeeccccccccccccch
Confidence 99999999999999999999999999999999999999999999987544332 235679999999999999 6799999
Q ss_pred hhhhhhhHHhhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhc
Q 001324 338 LRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAK 416 (1100)
Q Consensus 338 ~r~~E~~~IN~SL~~L~~vI~~L~~~~-~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~rak 416 (1100)
.|++||++||.+|++||+||++|.+.+ ..|||||||||||||||+||||+.|+||+||||+..++.||++||+||.||+
T Consensus 236 drlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak 315 (913)
T KOG0244|consen 236 DRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAK 315 (913)
T ss_pred hhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHH
Confidence 999999999999999999999998753 4799999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHHHHHh
Q 001324 417 RVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLK 452 (1100)
Q Consensus 417 ~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk 452 (1100)
+|+|+|.+|. ......+..++.+|..|+.++...+
T Consensus 316 ~iknk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 316 QIKNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred Hhcccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998 2223456677888888888776654
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-66 Score=599.22 Aligned_cols=330 Identities=38% Similarity=0.610 Sum_probs=286.2
Q ss_pred CCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEe------------cCCCCCcceecceecCCCCChhHHHhhhh
Q 001324 95 PQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVR------------NEYNPATAYAFDRVFGPHANSQEVYDVAA 162 (1100)
Q Consensus 95 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~------------~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~ 162 (1100)
.....+.|.|+||+||+.+.-...| ++...+..+++. +.......|.|.+||+|+++|.+||+.++
T Consensus 26 S~~~~d~v~v~~rvrP~~~~~~~~g--~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 26 SCESKDPVLVVCRVRPLSDASEDEG--CLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred chhhhcchheeEeecCCCCCccccc--eEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 3456788999999999986221222 222223333321 22334567999999999999999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc----------------------------
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD---------------------------- 214 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~---------------------------- 214 (1100)
.|+|.+++.|.|..+|+||.|||||||||+|++..+||+||++.-||..|++
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988864
Q ss_pred ------------C-------------------------CCceEEEEEeeeeeecceeeecCCCCC-----Cc-ceEEeCC
Q 001324 215 ------------T-------------------------PGREFLLRVSYLEIYNEVINDLLDPTG-----QN-LRVREDA 251 (1100)
Q Consensus 215 ------------~-------------------------~~~~~~v~vS~~EIyne~i~DLL~~~~-----~~-l~i~e~~ 251 (1100)
. .+..|.|+|||+|||||-|||||.+.+ +. ..+++|.
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~ 263 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT 263 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc
Confidence 0 123589999999999999999998653 22 5677887
Q ss_pred CC-cEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC
Q 001324 252 QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1100)
Q Consensus 252 ~g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~ 330 (1100)
+| +||.|+++|.|.+.+|++.+|..|.++|++++|..|..|||||+||+|.|.+.........++.|.|.|||||||||
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchh
Confidence 65 79999999999999999999999999999999999999999999999999987766555677899999999999999
Q ss_pred -cccccchhhhhhhhHHhhhHHHHHHHHHHhhcC----CCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHH
Q 001324 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG----KASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1100)
Q Consensus 331 -~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~----~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eT 405 (1100)
.+++++|.|++|+++||.||++||+||.+|..+ ...+|||||||||++++.+|.|+.+++||+||+|.+.+|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 679999999999999999999999999999763 236899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccc
Q 001324 406 HNTLKFASRAKRVEIYASRNK 426 (1100)
Q Consensus 406 l~TL~fa~rak~i~~~~~~n~ 426 (1100)
++.|+||.-|..|.+...++.
T Consensus 424 l~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred HHHHHHHHhcccccccCcccc
Confidence 999999999999987666643
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-60 Score=574.63 Aligned_cols=323 Identities=46% Similarity=0.689 Sum_probs=285.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~t 176 (1100)
..-.+++++++..|-...+ ..+.......+.........|.||+||++.++|++||+..+.|+++.++.|||+|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 19 KSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred eeecCceEEEeecCCCcch------heeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 4456789999999964432 2233322222211111255799999999999999999999999999999999999
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC-CceEEEEEeeeeeecceeeecCCCCCCcceEEeCC-CCc
Q 001324 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA-QGT 254 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~-~g~ 254 (1100)
|||||||||||||||.|....+||||+++.+||+.+.... +..|.|.|||+|||||+++|||.|....+.++++. .|+
T Consensus 93 vfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v 172 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGV 172 (568)
T ss_pred EEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCce
Confidence 9999999999999999999999999999999999997654 46799999999999999999999988778899987 689
Q ss_pred EeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC-ccc
Q 001324 255 YVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKT 333 (1100)
Q Consensus 255 ~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~-~~~ 333 (1100)
+|.|++++.|.+.++++.+|..|..+|+++.|.+|..|||||+||+|.+.+....... ...++|+||||||||+ ..+
T Consensus 173 ~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~--~~~~~l~lvDLagSE~~~~~ 250 (568)
T COG5059 173 KVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGT--SETSKLSLVDLAGSERAART 250 (568)
T ss_pred EeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccc--eecceEEEEeeccccccchh
Confidence 9999999999999999999999999999999999999999999999999988654432 2337999999999998 456
Q ss_pred ccchhhhhhhhHHhhhHHHHHHHHHHhhc-CCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHH
Q 001324 334 ETTGLRRKEGSYINKSLLTLGTVIGKLSE-GKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFA 412 (1100)
Q Consensus 334 ~~~g~r~~E~~~IN~SL~~L~~vI~~L~~-~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa 412 (1100)
+..+.|++||..||+||++||+||.+|.+ .+..|||||+|||||||+++|||+++|+|||||+|...++++|.+||+||
T Consensus 251 ~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a 330 (568)
T COG5059 251 GNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFA 330 (568)
T ss_pred hcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHH
Confidence 88999999999999999999999999987 44569999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccccc
Q 001324 413 SRAKRVEIYASRNKI 427 (1100)
Q Consensus 413 ~rak~i~~~~~~n~~ 427 (1100)
.||+.|.+.+..|..
T Consensus 331 ~rak~I~~~~~~~~~ 345 (568)
T COG5059 331 SRAKSIKNKIQVNSS 345 (568)
T ss_pred HHHhhcCCcccccCc
Confidence 999999999999863
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=4.4e-48 Score=406.62 Aligned_cols=177 Identities=41% Similarity=0.660 Sum_probs=165.5
Q ss_pred HHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeee
Q 001324 157 VYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVIND 236 (1100)
Q Consensus 157 vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~D 236 (1100)
||+.++ |+|+.+++|||+||||||||||||||||+|+..++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred cCCCCCCcceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-CCCce
Q 001324 237 LLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGV 315 (1100)
Q Consensus 237 LL~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~~~~~ 315 (1100)
++.+|..|..+|.++.|.+|..|||||+||+|+|.+..... .....
T Consensus 58 ---------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~ 104 (186)
T cd01363 58 ---------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQP 104 (186)
T ss_pred ---------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccce
Confidence 78899999999999999999999999999999999876543 22456
Q ss_pred EEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEe
Q 001324 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1100)
Q Consensus 316 ~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~ 394 (1100)
..|+|+||||||||+ .+++..+.+++|+++||+||.+|++||.+|+++. .||||||||||+||+|+|||||+|+||+|
T Consensus 105 ~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 105 KVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 789999999999998 5678889999999999999999999999999864 69999999999999999999999999999
Q ss_pred eCC
Q 001324 395 VTP 397 (1100)
Q Consensus 395 isp 397 (1100)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 998
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.96 E-value=6.5e-28 Score=311.86 Aligned_cols=445 Identities=20% Similarity=0.208 Sum_probs=371.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 001324 433 LIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTK----------L 502 (1100)
Q Consensus 433 ~~~~lq~eI~~Lk~eL~qlk~~~~~~~~~ee~~~l~qkLEe~q~klq~~lee~ee~~~al~~ri~~L~k----------l 502 (1100)
....+.++++++..++.+|++.+ +++.....+.+++.+++++.++++.++....+..++..|++ +
T Consensus 1344 ~~~~l~r~lsk~~~e~~~~~~k~-----e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1344 AKNELERKLSKANAELAQWKKKF-----EEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667788888888888898887 56667767889999999999998888888887777777755 2
Q ss_pred HHhhcCCCCCCCCCCCccccCCCcccCCCCcccccccccCCCCCCCCCCCCCCcccccccccccccccCCCCCCcccccc
Q 001324 503 ILVSTKNTIPGLSDVPNHQRSHSVGEDDGSLLLDGENQKDSTSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTEST 582 (1100)
Q Consensus 503 il~s~k~~~~~l~~~~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~t 582 (1100)
+.+++.+....+..++.+++ .|++++++||.+...++.++|.+
T Consensus 1419 ~~~d~~~~~~~~~~le~k~k---------------------------~f~k~l~e~k~~~e~l~~Eld~a---------- 1461 (1930)
T KOG0161|consen 1419 LQLDLERSRAAVAALEKKQK---------------------------RFEKLLAEWKKKLEKLQAELDAA---------- 1461 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 33333333333445566665 78999999999988888888887
Q ss_pred cccccccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccch---HH-------HHHHHHHHHHHH
Q 001324 583 QAGELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGS---KV-------QIQNLEREIQEK 652 (1100)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l---~~-------qieeLed~l~~~ 652 (1100)
..+.|...+..+++...++++.++++++.++++.+.+++.+|..+..+.-..+ +. ++.+|+.+|.+.
T Consensus 1462 ---q~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1462 ---QRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEEL 1538 (1930)
T ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999988873222 11 222333333333
Q ss_pred HHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH--------------------------------HH
Q 001324 653 RRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE--------------------------------IK 700 (1100)
Q Consensus 653 k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele--------------------------------~~ 700 (1100)
+..++..+.... + ...++++.+.++.+.+.++++|++ ++
T Consensus 1539 E~~le~eE~~~l---r------~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkl 1609 (1930)
T KOG0161|consen 1539 EAALEAEEDKKL---R------LQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKL 1609 (1930)
T ss_pred HHHhhhhhhHHH---H------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh
Confidence 333221111111 1 233778888888888888888877 67
Q ss_pred HHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH---
Q 001324 701 SADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLE--- 777 (1100)
Q Consensus 701 ~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e--- 777 (1100)
++|+.+|+.+|++| ++...++++++++++.++.+++...++......++.+++..+++++.++++|+++++..
T Consensus 1610 e~di~elE~~ld~a----nk~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~ 1685 (1930)
T KOG0161|consen 1610 EGDINELEIQLDHA----NKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEA 1685 (1930)
T ss_pred hcchHHHHHHHHHH----HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999 99999999999999999999999888888888899999999999999999999988877
Q ss_pred ------------------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 778 ------------------HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 778 ------------------~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
+..+..++..+...+++++.++.++.++......+++.+.++++|++++.++|.+||..+++
T Consensus 1686 ~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~ 1765 (1930)
T KOG0161|consen 1686 LERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQE 1765 (1930)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55566677888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001324 840 SMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFL 919 (1100)
Q Consensus 840 ~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~ 919 (1100)
+..+++ ..|+.|+..+++++.+|++++ ..+..+.++.+++++.|++.||.+|..++++
T Consensus 1766 ~~~~le--------~~k~~LE~~~kdLq~rL~e~E--------------~~a~~~~k~~i~~Learir~LE~~l~~E~~~ 1823 (1930)
T KOG0161|consen 1766 TSQKLE--------RLKKSLERQVKDLQLRLDEAE--------------QAALKGGKKQIAKLEARIRELESELEGEQRR 1823 (1930)
T ss_pred HHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------------HhhhhccHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 999999 899999999999999999998 5688889999999999999999999999988
Q ss_pred HHHHH-------hhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 920 EDEYR-------KKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 920 ~~el~-------~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
..+.. ++++|+++++++..+...+++++|+||+.-+..
T Consensus 1824 ~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~ 1868 (1930)
T KOG0161|consen 1824 KAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQ 1868 (1930)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88765 999999999999999999999999999877543
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.93 E-value=1.4e-27 Score=301.00 Aligned_cols=439 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 001324 432 SLIKKYQREISSLKEELDQLKRGILVGVSHEELMTLRQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTK---------- 501 (1100)
Q Consensus 432 ~~~~~lq~eI~~Lk~eL~qlk~~~~~~~~~ee~~~l~qkLEe~q~klq~~lee~ee~~~al~~ri~~L~k---------- 501 (1100)
.-...+++++..++.+|.+|+..+ ..+.....+.+++.+.++..++.+.++....+..++..|.+
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~K~-----e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~Ele 359 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKKKY-----EEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELE 359 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999888 55666667788999999999999988888888888887766
Q ss_pred HHHhhcCCCCCCCCCCCccccCCCcccCCCCcccccccccCCCCCCCCCCCCCCcccccccccccccccCCCCCCccccc
Q 001324 502 LILVSTKNTIPGLSDVPNHQRSHSVGEDDGSLLLDGENQKDSTSSASGLASDLPSDFKHRRSSSKWNEEFSPTSSTVTES 581 (1100)
Q Consensus 502 lil~s~k~~~~~l~~~~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 581 (1100)
++.+.+.+.......+.++|| .||+.+++|+.+......+.|.+
T Consensus 360 Dl~~eLe~~~~~~~~LeKKqr---------------------------~fDk~l~e~k~~~~~~~~e~d~~--------- 403 (859)
T PF01576_consen 360 DLTSELEKAQAAAAELEKKQR---------------------------KFDKQLAEWKAKVEELQAERDAA--------- 403 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------------hHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 445555666666777888887 89999999999888888888887
Q ss_pred ccccccccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----------------ccchHHHHHH
Q 001324 582 TQAGELISGSKHPIGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND-----------------PDGSKVQIQN 644 (1100)
Q Consensus 582 t~~~~~~~~~~~~~~~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~-----------------~~~l~~qiee 644 (1100)
....+...+..+++..+++.+.+++..+.++++.++.++++|..+++++ ..+++.++++
T Consensus 404 ----q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE 479 (859)
T PF01576_consen 404 ----QREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEE 479 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999998886 2223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH--------------------------
Q 001324 645 LEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE-------------------------- 698 (1100)
Q Consensus 645 Led~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele-------------------------- 698 (1100)
+++++.....++. +... +|++.++++.+.|.+|++|++
T Consensus 480 ~E~~l~~~E~~~l----------Rl~~------el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~ 543 (859)
T PF01576_consen 480 AEDALEAEEQKKL----------RLQV------ELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAE 543 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH----------HHHH------HHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444444 3333 778888888888888888888
Q ss_pred ------HHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001324 699 ------IKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENE 772 (1100)
Q Consensus 699 ------~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE 772 (1100)
++++++++|+.+|+++ +....++++.+++++.+|.+++...+......+++..++..+++++..++.+++
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld~~----n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ele 619 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLDHA----NRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELE 619 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899999999 888999999999999999999998888888888888888888888877777777
Q ss_pred HHHHH---------------------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 773 KLKLE---------------------HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 773 ~lk~e---------------------~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
.++.. +..++.++..+...+++|+.++..+..++.....+++.+.+++++++++.++|.
T Consensus 620 e~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~ 699 (859)
T PF01576_consen 620 ELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLA 699 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 77665 666777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001324 832 KELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEA 911 (1100)
Q Consensus 832 ~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~ 911 (1100)
.||..++++..+++ ..|..|+...++++.+|++++ ..++.+++..++.++.|+..||.
T Consensus 700 ~eL~~Eq~~~~~le--------~~k~~LE~q~keLq~rl~e~E--------------~~~~~~~k~~i~kLE~ri~eLE~ 757 (859)
T PF01576_consen 700 EELRQEQDHNQHLE--------KEKKALERQVKELQARLEEAE--------------QSALKGGKKQIAKLEARIRELEE 757 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------------HhhhcccccHHHHHhHHHHHHHH
Confidence 99999999999999 899999999999999999998 45777889999999999999999
Q ss_pred HHHHHHhhHHHHH-------hhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 912 ALAEKEFLEDEYR-------KKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 912 el~~k~~~~~el~-------~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
+|..+++...+++ ++++|+..++++..+...+|+++|++|...+..
T Consensus 758 ~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~ 810 (859)
T PF01576_consen 758 ELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQ 810 (859)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876 999999999999999999999999999887654
No 32
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.5e-13 Score=158.79 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
+.++++.+......+..+......+.+++++++.+|-.+.....+.|-++..+...+..+++-|..+...|.+.+.....
T Consensus 438 ~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~ 517 (698)
T KOG0978|consen 438 LSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA 517 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445556666788889999999999999999999999999999999999999999988888888776666
Q ss_pred hHHHHh
Q 001324 840 SMHSRG 845 (1100)
Q Consensus 840 ~~~~~e 845 (1100)
......
T Consensus 518 ~~~~~~ 523 (698)
T KOG0978|consen 518 SVDKLE 523 (698)
T ss_pred HHHHHH
Confidence 665554
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.9e-13 Score=145.07 Aligned_cols=82 Identities=29% Similarity=0.661 Sum_probs=68.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhcCCCC----ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCc
Q 001324 1018 ETPKEEPLVARLKARMQEMKEKEQKYQGNGD----PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICR 1089 (1100)
Q Consensus 1018 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr 1089 (1100)
...++..+++.....++++........+.+. +++.+|+||+...++++++||+|+|+|..|+... .+|||||
T Consensus 253 ~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICR 332 (349)
T KOG4265|consen 253 KVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICR 332 (349)
T ss_pred eeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccc
Confidence 3445666888888999999987755555444 6788999999999999999999999999998765 5699999
Q ss_pred ccccceeecc
Q 001324 1090 TKISDRLFAF 1099 (1100)
Q Consensus 1090 ~~i~~~i~~f 1099 (1100)
++|...+.|+
T Consensus 333 qpi~~ll~i~ 342 (349)
T KOG4265|consen 333 QPIEELLEIY 342 (349)
T ss_pred cchHhhheec
Confidence 9999988876
No 34
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=6.2e-12 Score=99.67 Aligned_cols=49 Identities=37% Similarity=1.046 Sum_probs=44.4
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccceeeccC
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDRLFAFT 1100 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~~i~~f~ 1100 (1100)
.+|.||++++.+.|+..|||+|+|..|+.+. ..||+||.+|..+|+.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 4799999999999999999999999997654 459999999999999874
No 35
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=99.01 E-value=1.9e-07 Score=115.90 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=74.0
Q ss_pred hhhhh--hhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 001324 849 QTVNG--VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKK 926 (1100)
Q Consensus 849 q~v~~--~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~ 926 (1100)
+|+++ ++|.+++++...+.++++.++++ .....+..|..++..+....+.+.++.+||++++++.....+|..+
T Consensus 707 ~~lseek~ar~k~e~~~~~i~~e~e~L~~d----~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq 782 (1317)
T KOG0612|consen 707 SKLSEEKSAREKAENLLLEIEAELEYLSND----YKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQ 782 (1317)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHhhh----hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhH
Confidence 99999 89999999999999999999863 3344477799999999999999999999999999999888888622
Q ss_pred H-----HHHHHHHHHHHHHHHh
Q 001324 927 V-----EESKRREEALENDLAN 943 (1100)
Q Consensus 927 l-----eEl~~~~~~L~~el~~ 943 (1100)
- +.++.+...+..+++.
T Consensus 783 ~~~~~t~~~Ekq~~~~~~~l~~ 804 (1317)
T KOG0612|consen 783 EQEVNTKMLEKQLKKLLDELAE 804 (1317)
T ss_pred HHhhccHHHHHHHHHHHHHHHH
Confidence 2 4455666666666633
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.99 E-value=2.6e-08 Score=117.26 Aligned_cols=275 Identities=17% Similarity=0.233 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCC-------------------------ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 607 VEQVKMLAGEIAFSSSNLKRLVDQSVND-------------------------PDGSKVQIQNLEREIQEKRRQMRILEQ 661 (1100)
Q Consensus 607 ~eq~k~l~~e~~~l~~el~~L~~q~~~~-------------------------~~~l~~qieeLed~l~~~k~~i~~Le~ 661 (1100)
.|+|.-|+.+|..|+.++..|..-.... ..++++.+..|+++++.++.++...++
T Consensus 55 IekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k 134 (546)
T KOG0977|consen 55 IEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455566666666666666555444433 344555677999999999999999999
Q ss_pred HHhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---hhHHhHHHHHHHHHHHHHHHHHH
Q 001324 662 RIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK---LIHECSENKKLQEKVNLLEQQLA 737 (1100)
Q Consensus 662 ri~~sr~~-~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a---~~~e~~~~~el~~~~~~Lq~el~ 737 (1100)
.....++. ......+.++++.+.-+.+..+..++|+..+.+++..|..+|..+ ++.|+.-..+++.+++.|.++|.
T Consensus 135 ~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 135 ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 98888887 556778999999999999999999999999999999999999887 56677778899999999999999
Q ss_pred hhccCCCCCCCC--------C-C------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 001324 738 CQNGDKSAGSSG--------Q-G------------TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLA 796 (1100)
Q Consensus 738 ~l~~~~~~~~~~--------~-~------------e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle 796 (1100)
+++..+..+... . . .+++..++++..+..-+.+||.++... +++ ++....+..
T Consensus 215 f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~k--I~~----i~~~~~~~~ 288 (546)
T KOG0977|consen 215 FLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRK--IQE----IRTSAERAN 288 (546)
T ss_pred HHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHH----HHhhhcccc
Confidence 988765543211 0 1 222333444555555677778777776 555 455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhccccccccc
Q 001324 797 EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTE 876 (1100)
Q Consensus 797 ~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~ 876 (1100)
....++.|+...+...+..|..++..|+..|..|.+.+..++.+... +.|.|-+.|. ++...+..+++
T Consensus 289 ~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e----------~~r~~e~~L~-~kd~~i~~mRe- 356 (546)
T KOG0977|consen 289 VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDE----------DQRSFEQALN-DKDAEIAKMRE- 356 (546)
T ss_pred chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhh----------hhhhhhhhhh-hHHHHHHHHHH-
Confidence 78888999999999999999999999999999999998888776652 2344433333 44555555443
Q ss_pred ccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 001324 877 ISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAAL 913 (1100)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el 913 (1100)
.+..+-.+++++.+-..+|++||
T Consensus 357 --------------ec~~l~~Elq~LlD~ki~Ld~EI 379 (546)
T KOG0977|consen 357 --------------ECQQLSVELQKLLDTKISLDAEI 379 (546)
T ss_pred --------------HHHHHHHHHHHhhchHhHHHhHH
Confidence 34445566666666666666665
No 37
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.1e-10 Score=120.35 Aligned_cols=50 Identities=32% Similarity=0.895 Sum_probs=48.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001324 1051 SHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1100 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f~ 1100 (1100)
...|.|||+.+++++|++|||++.|..|..+|..|||||+.|..+++||.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhc
Confidence 56899999999999999999999999999999999999999999999994
No 38
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.84 E-value=2.7e-05 Score=103.95 Aligned_cols=258 Identities=18% Similarity=0.162 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND---PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 677 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~---~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~ 677 (1100)
+++|.+...-..+.++-..++.++.+|..++... ..+.....+.++..+.....++..+.+.+.+ ......
T Consensus 1196 ~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~------l~~q~~ 1269 (1930)
T KOG0161|consen 1196 EQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND------LTAKRS 1269 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence 4445444444466666666666666666555422 2222223345555666666666655554332 223455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---hhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCh
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK---LIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSD 754 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a---~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~ 754 (1100)
.++.....|.+++.+.+..+..+.-+...+..||+.. +..+.++.-.+...+.+++.+...++...+ +-.
T Consensus 1270 ~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le-------ee~ 1342 (1930)
T KOG0161|consen 1270 RLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE-------EEQ 1342 (1930)
T ss_pred HhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 7777778888888888877776666666666555554 233355556666666777777666665433 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEE-NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~-~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+....+.+++.....++-+++........+ .+.+...++++..+...+++..+.+......|..-..+|+.+...+.-+
T Consensus 1343 e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d 1422 (1930)
T KOG0161|consen 1343 EAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD 1422 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444556666666777777777775555444 5667777888888888888887777777777777777777777777666
Q ss_pred HHHHHHhHHHHhhhh---hhhhhhhhhhhhhHHhhhhcccc
Q 001324 834 LLAARESMHSRGAAM---QTVNGVNRKYSDGMKAGRKGRLS 871 (1100)
Q Consensus 834 L~~~~~~~~~~e~q~---q~v~~~~r~~l~~~~~~~~e~l~ 871 (1100)
+.........++.++ ..+.++-++..+.+...++....
T Consensus 1423 ~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~ 1463 (1930)
T KOG0161|consen 1423 LERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQR 1463 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555 22222334444444444444333
No 39
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.82 E-value=1.1e-09 Score=89.82 Aligned_cols=44 Identities=43% Similarity=1.185 Sum_probs=38.3
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccce
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDR 1095 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~ 1095 (1100)
..|.||+++..+++++||||.+||..|+..+ ..||+||++|.++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4799999999999999999999999998776 7899999999763
No 40
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.5e-09 Score=118.21 Aligned_cols=53 Identities=34% Similarity=0.933 Sum_probs=48.8
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1100 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f~ 1100 (1100)
.+-+..|+||.+++.+++|+||||+|+|..|+...+.||+||+.|...+++|.
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhc
Confidence 34556899999999999999999999999999999999999999999998873
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.71 E-value=5.8e-06 Score=111.07 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 899 LQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 899 ~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
+..+..++..|..+|++-......+..+++.+..+..+|....+.+...+.++.++...
T Consensus 967 ~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~ 1025 (1179)
T TIGR02168 967 EEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025 (1179)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554443333322223677777777777777777777777777666544
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.70 E-value=9.5e-06 Score=92.81 Aligned_cols=260 Identities=19% Similarity=0.228 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHH
Q 001324 607 VEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV----QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQT 682 (1100)
Q Consensus 607 ~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~----qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~ 682 (1100)
.++|..|+.+|+.|..+|..+..........+.. ++..|+..|........ .+...+..++..
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka-------------~l~~e~~~l~~e 83 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKA-------------RLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhh-------------HHhhhhhhHHHH
Confidence 4556666666666666666555543333222222 33344444433333333 223344467777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC-------------
Q 001324 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSG------------- 749 (1100)
Q Consensus 683 ~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~------------- 749 (1100)
+..+..++.+.......+..++..|...|+.+ .....+|+.++..|+++|.+++..+.+....
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~----~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~ 159 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEE----TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEV 159 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh----hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceee
Confidence 77777777777777777888888888888887 6688888888888887777666432221100
Q ss_pred ----CCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 750 ----QGTSD----EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 821 (1100)
Q Consensus 750 ----~~e~~----~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~ 821 (1100)
..++. +....++..+...+.+++.++... +.+ +.....+.......+++++..+...+..|..++.
T Consensus 160 ~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k--~~~----l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~ 233 (312)
T PF00038_consen 160 DQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSK--LEE----LRQQSEKSSEELESAKEELKELRRQIQSLQAELE 233 (312)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccc--ccc----ccccccccccccchhHhHHHHHHhhhhHhhhhhh
Confidence 01222 222344445555666676666655 333 5556666677777778888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHH
Q 001324 822 KLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQA 901 (1100)
Q Consensus 822 kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a 901 (1100)
.|...|..|+..+...+..... .+...+.....+..++..++. .+..+..+.+.
T Consensus 234 ~l~~~~~~Le~~l~~le~~~~~-----------~~~~~~~~i~~le~el~~l~~---------------~~~~~~~ey~~ 287 (312)
T PF00038_consen 234 SLRAKNASLERQLRELEQRLDE-----------EREEYQAEIAELEEELAELRE---------------EMARQLREYQE 287 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHH-----------HHHHHHHhhhccchhHHHHHH---------------HHHHHHHHHHH
Confidence 8888888887776655544332 222333334444445544432 23344556677
Q ss_pred HHHHHHHHHHHHHH
Q 001324 902 RKQREAALEAALAE 915 (1100)
Q Consensus 902 ~~~r~~aLE~el~~ 915 (1100)
+++..-+|+.||..
T Consensus 288 Ll~~K~~Ld~EIat 301 (312)
T PF00038_consen 288 LLDVKLALDAEIAT 301 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHH
Confidence 77777777777754
No 43
>PRK02224 chromosome segregation protein; Provisional
Probab=98.69 E-value=0.00024 Score=92.74 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchHHHHHHH
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTV 683 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~~~~ 683 (1100)
.+..+...+...+..+...+..+..+ .+.++.++..|++.+...+..+..+.+.+...... ......+..+..++
T Consensus 318 ~l~~k~~el~~~l~~~~~~l~~~~~~----~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el 393 (880)
T PRK02224 318 ELEDRDEELRDRLEECRVAAQAHNEE----AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433322 23444455555555555555555444444333222 12222333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 684 TRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 684 ~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
.++..++.+-..+++.....+.+++.+++.+ ......++..+..++..|..++
T Consensus 394 ~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l----~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDEL----REREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333334444555555666666666 4455555555566666665555
No 44
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.69 E-value=7.6e-05 Score=90.21 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHH
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVT 684 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~ 684 (1100)
+|+.|++.|..++..++...+.=. ..-...++++++++.+++-...+-.+...|++++.++|-... +++..+.
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk-~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~k------eaqe~ke 300 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDK-AKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAK------EAQEAKE 300 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 366666666666655553222000 000113567778888888888888888888888887775544 7777777
Q ss_pred HHHHHHHHHHHHHHH
Q 001324 685 RLMSQCNEKAFELEI 699 (1100)
Q Consensus 685 ~L~r~l~ek~~Ele~ 699 (1100)
++.+.+.+..+-+|-
T Consensus 301 ~~k~emad~ad~iEm 315 (1243)
T KOG0971|consen 301 RYKEEMADTADAIEM 315 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766653
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.68 E-value=0.00014 Score=86.46 Aligned_cols=201 Identities=17% Similarity=0.170 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHH
Q 001324 606 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTR 685 (1100)
Q Consensus 606 l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~ 685 (1100)
|..+++...++...|......|..+. ..++.+++.|+.++.+.+..+..|..+..+-..... .+......
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~----~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e------~l~~E~~~ 210 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEV----EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSE------ELKEERES 210 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 45566666666666666666555554 667778888888888888888877776554443322 33334444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHH----HHHHHHHHhhccCCCCCCCCCCCChHHHHHHH
Q 001324 686 LMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKV----NLLEQQLACQNGDKSAGSSGQGTSDEYVDELR 761 (1100)
Q Consensus 686 L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~----~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~ 761 (1100)
|..+..+....+..++.++..|..+.... .+.....+++.... ..|++.|...................+...++
T Consensus 211 L~~q~~e~~~ri~~LEedi~~l~qk~~E~-e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~Lk 289 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKTLTQKEKEQ-EKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALK 289 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 44444443333333333333333333111 00000111111111 11111121111100001111122334455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 762 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLA 817 (1100)
Q Consensus 762 ~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~ 817 (1100)
.++..+++.+...++.+..+.....++.....+.-.+...+.=++.++...+.++.
T Consensus 290 eqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~ 345 (546)
T PF07888_consen 290 EQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADAS 345 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66666666666666665556665566666666666655555555555544444333
No 46
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.55 E-value=4.8e-05 Score=102.27 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.7
Q ss_pred EeeccCCCCCcccc
Q 001324 178 FAYGVTSSGKTHTM 191 (1100)
Q Consensus 178 ~aYGqtgSGKT~Tm 191 (1100)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 44799999999876
No 47
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.55 E-value=7.6e-05 Score=99.63 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=30.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 922 EYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 922 el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
++..+++++..+.+++......++..+.+++++...
T Consensus 974 ~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~ 1009 (1163)
T COG1196 974 EVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999998889888888887654
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.54 E-value=4.6e-05 Score=102.47 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=7.2
Q ss_pred CCCCccchhhcc
Q 001324 370 YRDSKLTRLLQS 381 (1100)
Q Consensus 370 yRdSkLT~lL~d 381 (1100)
+|.+++..++.+
T Consensus 55 ~r~~~~~~~i~~ 66 (1164)
T TIGR02169 55 MRAERLSDLISN 66 (1164)
T ss_pred hhhhhHHHhhcc
Confidence 456666666665
No 49
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.53 E-value=4.9e-05 Score=102.18 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 001324 892 PDDLKLELQARKQREAALEAALAEKE----FLEDEYRKKVEESKRREEALENDLANMWVLVAKLK 952 (1100)
Q Consensus 892 ~~~~k~~~~a~~~r~~aLE~el~~k~----~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ 952 (1100)
...++..+..+-..+..+ .... .+-+.+..+++++....+.|+..+..|...+..+-
T Consensus 967 ~~~l~~~i~~lg~aiee~----~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 967 EEEARRRLKRLENKIKEL----GPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555533333 3222 34455667777777777777776666666666666
No 50
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.49 E-value=0.00067 Score=84.92 Aligned_cols=235 Identities=17% Similarity=0.194 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hcccccccc
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN-------GEASMANAS 675 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~s-------r~~~~~~~~ 675 (1100)
+|...+++.-|-.|...+..++..|.+. .++++.+++.++..+......+..|--++-.. .........
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~----lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~ 184 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKT----LEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRR 184 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHH
Confidence 6666667777766777777777655533 35666667766666666666665554443111 111122223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIK-------------SADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~-------------~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
+.++...+..|...+..++-+.... .+.-..+|.-++.+ -..+..+.+.+..++.+|.-|+..
T Consensus 185 ~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L~~~ 260 (775)
T PF10174_consen 185 IREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRLRSR 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555444211 00001133333333 446777777778889999988876
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 743 KSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 822 (1100)
Q Consensus 743 ~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~k 822 (1100)
.+......+.+..++...+.....++..++.++.++.........+.+.-.-+.....-++.-+..+...+.....+.+.
T Consensus 261 ~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~ 340 (775)
T PF10174_consen 261 GELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEM 340 (775)
T ss_pred ccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444444444444455555555555555444333333333333333333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHh
Q 001324 823 LSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 823 L~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
|++++..|+-+|..+...+....
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.00074 Score=88.28 Aligned_cols=227 Identities=15% Similarity=0.152 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHHHHhhhhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 001324 601 DQMDLLVEQVKM----LAGEIAFSSSNLKRLVDQSVND-PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANAS 675 (1100)
Q Consensus 601 ~~~d~l~eq~k~----l~~e~~~l~~el~~L~~q~~~~-~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~ 675 (1100)
+.++.+.+++.. +......+...++++..++.+. ...+..++..+++++......+..+++++.... ..
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~------~~ 235 (880)
T PRK02224 162 GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQAR------ET 235 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 345544444443 3444555555555555544442 122333444444444444444443333322111 11
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 001324 676 MVDMQQTVTRLM---SQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGT 752 (1100)
Q Consensus 676 ~~el~~~~~~L~---r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e 752 (1100)
+..+...+.++. .++.....+++.+...+..++.++... ..++.++...+..++.+++.+.............
T Consensus 236 l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l----~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~ 311 (880)
T PRK02224 236 RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL----AEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHH
Confidence 112222222222 112222233333333444444444333 3344444445555555555555433322111222
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
+......+.+++..++..++++......+....+.+......++.+...+.+....+..++..+...+..+..+...+++
T Consensus 312 l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~ 391 (880)
T PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444555555555555555444444444455556666666666666666666666666666666666666666665
Q ss_pred HHHHH
Q 001324 833 ELLAA 837 (1100)
Q Consensus 833 EL~~~ 837 (1100)
++...
T Consensus 392 el~el 396 (880)
T PRK02224 392 EIEEL 396 (880)
T ss_pred HHHHH
Confidence 55544
No 52
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.45 E-value=0.00029 Score=84.08 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=29.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 778 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 824 (1100)
Q Consensus 778 ~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~ 824 (1100)
...+.|...+++..+..|..|.++-.++++.+..+++.+.+-.+.+.
T Consensus 265 ak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~ 311 (1265)
T KOG0976|consen 265 AKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRAD 311 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555566666666777777777777777777766665555443
No 53
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=9.5e-08 Score=101.40 Aligned_cols=47 Identities=38% Similarity=0.914 Sum_probs=44.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f 1099 (1100)
.|..|..+...++++||+|+|+|..|...+..||+|+.++...+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 39999999999999999999999999988899999999999999987
No 54
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.41 E-value=0.0016 Score=77.73 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCC
Q 001324 808 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDS 887 (1100)
Q Consensus 808 ~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~ 887 (1100)
.+....+...+++.+|..+..++++-|..++.+...++.++..-.|..
T Consensus 361 ~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n-------------------------------- 408 (546)
T PF07888_consen 361 ALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN-------------------------------- 408 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------------------------
Confidence 333444455566777777777777777666666665553331111111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 001324 888 WNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 941 (1100)
Q Consensus 888 ~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el 941 (1100)
+-.+.+....+..|.+.|+--++.+++++..-+||..-+..|+..|
T Consensus 409 --------~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~ 454 (546)
T PF07888_consen 409 --------RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRL 454 (546)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234444444555666666666667788888888888888888776
No 55
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.35 E-value=0.0092 Score=79.37 Aligned_cols=135 Identities=11% Similarity=0.095 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~ 680 (1100)
++...+..+++.+..++..+..-+........+....++.+.+.+..+...+...|..+..-+... ..+..+...+.
T Consensus 997 ~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l---~kl~ee~~~~~ 1073 (1822)
T KOG4674|consen 997 DKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKL---IKLREEFAKCN 1073 (1822)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344444444445554554444444433333333333334444445555555544444111111110 11222333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRI----LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~----LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
.++..|..-..-....+.....++.+ |+.++... ...+..|..+...|..+++.+...
T Consensus 1074 ~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~----~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1074 DELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNEL----KKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred HHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444334344333333333 66666666 667788888888888888777654
No 56
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.0015 Score=80.74 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=41.1
Q ss_pred CcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 001324 879 GVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKE-FLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKE 954 (1100)
Q Consensus 879 ~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~-~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke 954 (1100)
+.+...+|-........+..+..+.+++..|+.-+--+- ..=+....+..+++.+..-++++-...+..|++|.+.
T Consensus 947 gk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~ 1023 (1174)
T KOG0933|consen 947 GKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEK 1023 (1174)
T ss_pred cCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444554455666667777777777777765433222 1112222555555555555666665556666666443
No 57
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.28 E-value=0.0021 Score=86.16 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 767 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 767 lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
++++++.+...+....+..+.+...-.....++..++.+...+..+++.....+..|..+..+++.++
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 672 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEI 672 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444333333333333333333334444455555555555555555555555555555555443
No 58
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.28 E-value=0.0026 Score=79.84 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD-----------------GSKVQIQNLEREIQEKRRQMRILEQRII 664 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~-----------------~l~~qieeLed~l~~~k~~i~~Le~ri~ 664 (1100)
.+|.-...+..|++.+..+..++..|....+-+.. .++..+..++-+|...+..+..+-.++.
T Consensus 232 ~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 232 VIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44545556778888888888888888665553321 2233455666666666666665555554
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCC
Q 001324 665 ENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKS 744 (1100)
Q Consensus 665 ~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~ 744 (1100)
... ....+++..+..|...+..++.+-+.+.+|++.|...|+.+ .....+.+..+..++.++..++..
T Consensus 312 ~~~------~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k----~~~l~kk~~~~~~~qeE~~~~~~E-- 379 (775)
T PF10174_consen 312 TLE------EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK----NSQLEKKQAQIEKLQEEKSRLQGE-- 379 (775)
T ss_pred HHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333 34458999999999999999999999999999999999999 666677777776666666665532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 745 AGSSGQGTSDEYVDELRKKVQSQETENEKLKLE 777 (1100)
Q Consensus 745 ~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e 777 (1100)
..++.+.++..+.++..++..||.|...
T Consensus 380 -----i~~l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 380 -----IEDLRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234556666677777777776665544
No 59
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.27 E-value=0.00062 Score=91.08 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 164 ~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+++-.+..|+++- .||.||||+-.+
T Consensus 17 ~~~i~f~~~~t~I---vGPNGSGKSNI~ 41 (1163)
T COG1196 17 PTEINFSPGFTAI---VGPNGSGKSNIV 41 (1163)
T ss_pred CeeeecCCCCeEE---ECCCCCchHHHH
Confidence 4444556777764 499999998765
No 60
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.25 E-value=0.0022 Score=79.14 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 785 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 785 ~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
.-.|...+++|+-+.-.+.+..-++...+..+++..++|+.++++|.++....+....
T Consensus 403 ~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~ 460 (1195)
T KOG4643|consen 403 HLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLS 460 (1195)
T ss_pred HHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3345556667777777777777777777777777777777777777777655554443
No 61
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.5e-07 Score=95.07 Aligned_cols=51 Identities=22% Similarity=0.727 Sum_probs=42.1
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccc--cceeecc
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKI--SDRLFAF 1099 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-------~~CP~Cr~~i--~~~i~~f 1099 (1100)
+.+-..|.||++...+.||.+|||+ ||..|.... ..||+|+..| ..+|+||
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 4556689999999999999999999 999995433 5599999865 5667776
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=0.0016 Score=88.32 Aligned_cols=93 Identities=6% Similarity=0.125 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--hhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCC--CCC
Q 001324 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK--LIHECSENKKLQEKVNLLEQQLACQNGDKSAGS--SGQ 750 (1100)
Q Consensus 675 ~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a--~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~--~~~ 750 (1100)
.+-+++..+.++...+.+...+++...+.+..+...++.+ +......+..+..++..++.+|+.+........ ...
T Consensus 745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~ 824 (1311)
T TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTV 824 (1311)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCH
Confidence 4456666666777777766666666666666666655444 222233344555555666666555544322211 122
Q ss_pred CCChHHHHHHHHHHHHH
Q 001324 751 GTSDEYVDELRKKVQSQ 767 (1100)
Q Consensus 751 ~e~~~~~~~l~~~~~~l 767 (1100)
.+++.++..++.++..+
T Consensus 825 ~ele~ei~~~~~el~~l 841 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTV 841 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 63
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.21 E-value=0.0039 Score=74.91 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 612 MLAGEIAFSSSNLKRLVDQSVND---PDGSKVQIQNLEREIQEKRRQMRILEQRIIEN 666 (1100)
Q Consensus 612 ~l~~e~~~l~~el~~L~~q~~~~---~~~l~~qieeLed~l~~~k~~i~~Le~ri~~s 666 (1100)
.++-+...++..+..+.+++.++ .+++...+.+|+++|..+...|.+....+-+.
T Consensus 117 ~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk 174 (1265)
T KOG0976|consen 117 RLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDK 174 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 33444555555555555555555 33444567777777777777777666554433
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.21 E-value=2.7e-07 Score=117.95 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
..+..++++...++.+|+.+......-......|.-.++.|+.+...++.....+...+..+...+-+|+.+..++..++
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~ 505 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI 505 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555544443333333334466666677777776766666676667777777777666666665553
No 65
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.20 E-value=0.00068 Score=91.77 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=19.6
Q ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 001324 924 RKKVEESKRREEALENDLANMWVLVAKLKKEVG 956 (1100)
Q Consensus 924 ~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~ 956 (1100)
..++..+..+...+..++.++...|..|+.++.
T Consensus 1060 ~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606 1060 EENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355555555555555666666666666666663
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.18 E-value=0.0047 Score=75.41 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhh------
Q 001324 787 GLHVQNQKLAEEASYAKELA-------SAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG------ 853 (1100)
Q Consensus 787 ~L~~~~~kle~e~~~~~ee~-------~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~------ 853 (1100)
+|..+|.||.+-..-+.|++ .++..|++....+++.|..+...|..++......++.+.+|+-..-+
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE 451 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 35555666655555555544 45666777777777777777777888888888888888777711111
Q ss_pred ---hhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHhh
Q 001324 854 ---VNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKE----FLEDEYRKK 926 (1100)
Q Consensus 854 ---~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~----~~~~el~~~ 926 (1100)
+..=.|+.-.+-+.+.+.+++ +.+.+..++.+. ...++.+|+++- -...+++++
T Consensus 452 qLtdknlnlEekVklLeetv~dlE----------------alee~~EQL~Es---n~ele~DLreEld~~~g~~kel~~r 512 (1243)
T KOG0971|consen 452 QLTDKNLNLEEKVKLLEETVGDLE----------------ALEEMNEQLQES---NRELELDLREELDMAKGARKELQKR 512 (1243)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 233334444445555555544 233333333221 233333333332 222466677
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 927 VEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 927 leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
+++...-+-+...-+...+++|++|+.++..
T Consensus 513 ~~aaqet~yDrdqTI~KfRelva~Lqdqlqe 543 (1243)
T KOG0971|consen 513 VEAAQETVYDRDQTIKKFRELVAHLQDQLQE 543 (1243)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778888888889998887754
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.17 E-value=0.0026 Score=78.98 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCHHHHHHHHHHHHHHHHHH
Q 001324 404 ETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKRGIL-VGVSHEELMTLRQKLEEGQVKM 478 (1100)
Q Consensus 404 eTl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~~~~-~~~~~ee~~~l~qkLEe~q~kl 478 (1100)
-+..|=+|-.||+.|+...+.. .|...+..+++.|...+.-+. ..++.+++.++-..+++.+..+
T Consensus 1176 L~~rt~rl~~~A~~l~~tGv~g----------ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l 1241 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQTGVLG----------AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQL 1241 (1758)
T ss_pred HHHHHHHHHHHHHHhhhccCch----------hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 3556667888888887655432 345555555555555554432 2355666666555555544443
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.17 E-value=0.028 Score=69.38 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~ 680 (1100)
+++..|++.++.|.+.+.........|..-. .+.+.++.+|+..+...+.......+-+. ....-...++.+-
T Consensus 87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~----~EqEerL~ELE~~le~~~e~~~D~~kLLe---~lqsdk~t~SRAl 159 (617)
T PF15070_consen 87 AEAEHLRKELESLEEQLQAQVENNEQLSRLN----QEQEERLAELEEELERLQEQQEDRQKLLE---QLQSDKATASRAL 159 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhcccchHHHHHH
Confidence 4455566666666665555443333222111 11122334444444444333322222111 1122223456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHH
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDEL 760 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l 760 (1100)
++..+|+.+|.|...-+-.+..++.+|...|+.. .--.++|.+++..+++.+..++............+..+.+.+
T Consensus 160 sQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E----q~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 160 SQNRELKEQLAELQDAFVKLTNENMELTSALQSE----QHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7888999999999999999999999988888887 445678888888888777776643222111111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 761 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 761 ~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
...++.-.+.-..+..+...|+.+.-.-.-.-.+|-.+-..-+..+..+..|+..+.+.+.-+..+|.+|...|.
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222222222222233333223222100000012232333333344455667777777888888888888877754
No 69
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=0.009 Score=75.40 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hhH
Q 001324 642 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK----LIH 717 (1100)
Q Consensus 642 ieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a----~~~ 717 (1100)
++.+-..+...+.++..+|.... -...-...+-+++.++++|.+.+.+..++--+ .+.+..||..++.. .-.
T Consensus 829 ~k~~~~~~~~l~~~i~~~E~~~~---k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~ 904 (1293)
T KOG0996|consen 829 VKRLAELIEYLESQIAELEAAVL---KKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQA 904 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHH
Confidence 33444444455555555555421 11222345667888899999998888755444 77788888887776 222
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001324 718 ECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 797 (1100)
Q Consensus 718 e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~ 797 (1100)
...+.+++.+++..|...|..++.......+...-....+.++++.+..+..+++.|..+...+.+....+...=.+-++
T Consensus 905 qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~ 984 (1293)
T KOG0996|consen 905 QKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEE 984 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 23345666666677777777666544444444444445556666666666666666666654444433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 798 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 798 e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
-+-.+++....+..++++..+.++.|....--+...++.......
T Consensus 985 ~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~ 1029 (1293)
T KOG0996|consen 985 SLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELN 1029 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 333444455555666666666666665533223333333333333
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=0.022 Score=70.56 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
..+.....++..++++|++++.++..+...-+++...-|+++.+...-+-..+.+..++..+..+...++....--..+|
T Consensus 671 k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~L 750 (1200)
T KOG0964|consen 671 KNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKEL 750 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Confidence 44556667888899999999999999999999999999999988888777777777777777766666655555555555
Q ss_pred HHHHHhHHHHhhhh
Q 001324 835 LAARESMHSRGAAM 848 (1100)
Q Consensus 835 ~~~~~~~~~~e~q~ 848 (1100)
...+.+....+.+.
T Consensus 751 e~i~~~l~~~~~~~ 764 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQS 764 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444433
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.12 E-value=0.013 Score=78.89 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
-+-..|-.|+|||+.|
T Consensus 19 ~t~i~GTNG~GKTTlL 34 (1201)
T PF12128_consen 19 HTHICGTNGVGKTTLL 34 (1201)
T ss_pred ceeeecCCCCcHHHHH
Confidence 3455699999999987
No 72
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.03 E-value=0.0051 Score=67.56 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhH
Q 001324 642 IQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECS 720 (1100)
Q Consensus 642 ieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~ 720 (1100)
...++.++......+..|+..+-..-.. ..+...+.++.....+..+.++..+.........+..|+.+|..+......
T Consensus 31 ~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee 110 (237)
T PF00261_consen 31 AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEE 110 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443322222 333444445555555555555555544444455555566666666221111
Q ss_pred ---HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001324 721 ---ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 797 (1100)
Q Consensus 721 ---~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~ 797 (1100)
...+...++..++..|.. ++..+..++.++..+..+|..+...+..+.............++.
T Consensus 111 ~e~k~~E~~rkl~~~E~~Le~--------------aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~ 176 (237)
T PF00261_consen 111 AERKYEEVERKLKVLEQELER--------------AEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE 176 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 122222333333444433 334566667777777777777777777777777777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 001324 798 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGA 846 (1100)
Q Consensus 798 e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~ 846 (1100)
.+..+.+-++.+....+.+..++.+|+.++..|..+|...+........
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877766653
No 73
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.02 E-value=1.5e-06 Score=89.71 Aligned_cols=49 Identities=20% Similarity=0.750 Sum_probs=39.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc--------------------CCCCCCCcccccc--eeecc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA--------------------CSECPICRTKISD--RLFAF 1099 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~--------------------~~~CP~Cr~~i~~--~i~~f 1099 (1100)
....|.||++...+.++.+|||. ||..|... ...||+||.+|.. .+++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45689999999999999999998 99999632 1469999999865 45554
No 74
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.048 Score=62.47 Aligned_cols=135 Identities=19% Similarity=0.301 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccccccchHHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREI-QEKRRQMRILEQRIIENGEASMANASMVDM 679 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l-~~~k~~i~~Le~ri~~sr~~~~~~~~~~el 679 (1100)
.+|..|.+.+-.|...+++|..+=+.|.. +|..++... .........++. .+.++
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~-----------~i~~~~~~~~~~~~~~~~~ye~-------------el~~l 59 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLES-----------EIEELREKKGEEVSRIKEMYEE-------------ELREL 59 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---------HHHHHHHHH-------------HHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHhcccccCcccccchhh-------------HHHHh
Confidence 35666777777777777777766554432 222222221 000001111111 22244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHH
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDE 759 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~ 759 (1100)
+.++..+...-.....+++.+..+++.+..+++.. ......+...+..|..+++... .....
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~lrk~ld~~~--------------~~r~~ 121 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELESLRKDLDEET--------------LARVD 121 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhhhh--------------hhHhH
Confidence 44555555555555555556666666666666665 5566666666666665555433 23345
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLE 777 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e 777 (1100)
++.++..++++++-++..
T Consensus 122 le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 122 LENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666667777777666554
No 75
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.00 E-value=0.065 Score=64.11 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCC-------C
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGS-------S 748 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~-------~ 748 (1100)
-.++.|.++.|+++..-.--|.+.+.-+...|...|..++.+ -+.++-.+.+..|+.+=+.|..+.-.-. .
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRA 481 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRA 481 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457888888888888888888877777777777777777543 1223334444444333222111000000 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 749 GQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA 828 (1100)
Q Consensus 749 ~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~ 828 (1100)
..-+.+.-....-+.+..|+.|.+.+++-+....+-+-.+.+--.|+..+...-++++....+-..+|..+..-+++-|.
T Consensus 482 k~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d 561 (961)
T KOG4673|consen 482 KIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATND 561 (961)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 00011111222223444455555555554433334333444444455555555555555555555555555555555554
Q ss_pred HHHHH
Q 001324 829 KLEKE 833 (1100)
Q Consensus 829 ~L~~E 833 (1100)
-+..+
T Consensus 562 ~a~~D 566 (961)
T KOG4673|consen 562 EARSD 566 (961)
T ss_pred hhhhh
Confidence 44443
No 76
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.99 E-value=0.0064 Score=75.32 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 001324 723 KKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKL 795 (1100)
Q Consensus 723 ~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kl 795 (1100)
+-|.+...-|++||..+..+.+ ...++.++-.+++++..++.+.+-.+....+|+++|..|..++.-|
T Consensus 274 ~vLleekeMLeeQLq~lrarse-----~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLRARSE-----GATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455554443211 1344445555555555555555444444444555555554444443
No 77
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.96 E-value=0.05 Score=65.02 Aligned_cols=139 Identities=16% Similarity=0.117 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh---hhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK---LIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV 757 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a---~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~ 757 (1100)
.++.+|.++.++-+--++++-..+..|+..+++. +.....-++-+++.|.+++.++...+.... .++...
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~-------~sr~~~ 546 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYS-------NSRALA 546 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHH
Confidence 3455555555544443444444555566555543 111122344455666666665554333211 222223
Q ss_pred HHHHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETE---------------NEKLKLEHVQLSEENSGLHVQNQKLAE----EASYAKELASAAAVELKNLAG 818 (1100)
Q Consensus 758 ~~l~~~~~~lk~e---------------lE~lk~e~~~l~e~~~~L~~~~~kle~----e~~~~~ee~~~l~~E~~~l~e 818 (1100)
+.++.++.+.++- -++++.+...+..+..+|...-++-+. .-.|+.+++.+|+..+...+-
T Consensus 547 ~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 547 AALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332222 334444445555555555544444443 444455566666666666666
Q ss_pred HHHHHHHH
Q 001324 819 EVTKLSLQ 826 (1100)
Q Consensus 819 ~v~kL~~q 826 (1100)
+...|.++
T Consensus 627 R~eel~q~ 634 (961)
T KOG4673|consen 627 RCEELIQQ 634 (961)
T ss_pred HHHHHHhh
Confidence 65555544
No 78
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.95 E-value=0.0046 Score=78.19 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.4
Q ss_pred hcCCceeEEeeccCCCCCccccC
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
=.|+-|-|+..-..+|||-|.|-
T Consensus 84 GrGaFGEV~lVr~k~t~~VYAMK 106 (1317)
T KOG0612|consen 84 GRGAFGEVALVRHKSTEKVYAMK 106 (1317)
T ss_pred cccccceeEEEEeeccccchhHH
Confidence 36999999999999999999983
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.0077 Score=74.76 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------cccccchHHHHHHH
Q 001324 610 VKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA------SMANASMVDMQQTV 683 (1100)
Q Consensus 610 ~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~------~~~~~~~~el~~~~ 683 (1100)
++.+..++...+.++.+|..++... +..+.....|+.++.-....+..+++++..+-.. ....+++.++.+++
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~l-e~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~I 757 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSL-EAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQI 757 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554221 1112234566666666666666666655543221 11223344444444
Q ss_pred HHHHHHHHHHHHHHH
Q 001324 684 TRLMSQCNEKAFELE 698 (1100)
Q Consensus 684 ~~L~r~l~ek~~Ele 698 (1100)
.+..+.++..++++.
T Consensus 758 ke~~~~~k~~~~~i~ 772 (1174)
T KOG0933|consen 758 KEKERALKKCEDKIS 772 (1174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 80
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.6e-06 Score=90.83 Aligned_cols=48 Identities=33% Similarity=0.840 Sum_probs=39.4
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1096 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i 1096 (1100)
+....+|.+|+++..+.-..||||. ||..|.... ..||.||.++...-
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence 3355799999999999999999999 999996433 55999999876543
No 81
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.88 E-value=0.0039 Score=78.50 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC-------
Q 001324 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQG------- 751 (1100)
Q Consensus 679 l~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~------- 751 (1100)
+|..+....++++.-.+++..++...+.|++.++.. ...+.+++..+...+.++..+....+.-.....
T Consensus 272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~----~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~ 347 (1074)
T KOG0250|consen 272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEK----QGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLD 347 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 366666777777777777777777777777777666 334555555554445444444432221111111
Q ss_pred -------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 -------TSDEYVDELRKKVQSQETENEKLKLEHVQLSEEN-SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 823 (1100)
Q Consensus 752 -------e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~-~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL 823 (1100)
+.+....+....+...+.+.+.++..+..+.++- ..+..+..+.+.+..+++.+++++...+..|.++.+.+
T Consensus 348 ~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334444445555555555554444443 44455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhh
Q 001324 824 SLQNAKLEKELLAARESMHSRGA 846 (1100)
Q Consensus 824 ~~qn~~L~~EL~~~~~~~~~~e~ 846 (1100)
.......++|+...+....++..
T Consensus 428 ~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 428 KEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 55555555554444444444433
No 82
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.87 E-value=0.024 Score=75.70 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 925 KKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
..|.++.+.+..|..+++.|++.+.+|++....
T Consensus 1053 ~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~ 1085 (1822)
T KOG4674|consen 1053 VQHADLTQKLIKLREEFAKCNDELLKLKKSRES 1085 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 778888889999999999999999999888754
No 83
>PRK11637 AmiB activator; Provisional
Probab=97.86 E-value=0.0023 Score=76.61 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001324 606 LVEQVKMLAGEIAFSSS 622 (1100)
Q Consensus 606 l~eq~k~l~~e~~~l~~ 622 (1100)
+.++++.+..++..+.+
T Consensus 45 ~~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEK 61 (428)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 84
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.075 Score=63.17 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCC---ccchHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHH
Q 001324 607 VEQVKMLAGEIAFSSSNLKRLVDQSVND---PDGSKV---QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1100)
Q Consensus 607 ~eq~k~l~~e~~~l~~el~~L~~q~~~~---~~~l~~---qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~ 680 (1100)
++.+..+..++..++.....|.+++... +.+++. ....|++++..++..+-.++. ....+.
T Consensus 227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~-------------k~~~~~ 293 (581)
T KOG0995|consen 227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKS-------------KKQHME 293 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHh-------------hhHHHH
Confidence 3444456666666666666666666522 122222 233466666666665552222 233788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh------hhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK------LIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a------~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
..+.+|...+.+|++|++.+.+.+++|+-+++.. ..+-+.+..+|.+.+..++-+++.+.
T Consensus 294 ~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~ 359 (581)
T KOG0995|consen 294 KKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLS 359 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999888765 12223445555555544444444433
No 85
>PRK03918 chromosome segregation protein; Provisional
Probab=97.84 E-value=0.036 Score=72.69 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.4
Q ss_pred EeeccCCCCCcccc
Q 001324 178 FAYGVTSSGKTHTM 191 (1100)
Q Consensus 178 ~aYGqtgSGKT~Tm 191 (1100)
+-+|++|||||..|
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 47899999998653
No 86
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.83 E-value=0.061 Score=65.91 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND 634 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~ 634 (1100)
+++..++|......++..-+++|..+..+++..
T Consensus 117 ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 117 ELESAREQYASAVAELDSVKQELEKLRQELASA 149 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445544444444444455554444444433
No 87
>PRK11281 hypothetical protein; Provisional
Probab=97.78 E-value=0.032 Score=73.14 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhh
Q 001324 802 AKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 853 (1100)
Q Consensus 802 ~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~ 853 (1100)
.-+.|.++..++..+.++.+.+..++.+.+..+...+.+....++|++|+..
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4466899999999999999999999999999999999999999999988776
No 88
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.78 E-value=0.017 Score=63.87 Aligned_cols=221 Identities=19% Similarity=0.215 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHH
Q 001324 609 QVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLM 687 (1100)
Q Consensus 609 q~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~~~~~~L~ 687 (1100)
+++....++...+.++..-...++.--++++.++.++.+.+...+.....+-.++.+.+.. ...+..+.++...+.++.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666555555555555566677778888887777777777666666666655 444445555555555555
Q ss_pred HHHHHHH---HHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHH
Q 001324 688 SQCNEKA---FELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 764 (1100)
Q Consensus 688 r~l~ek~---~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~ 764 (1100)
+..++.. -.+..+...+..|+--.++... -...+.++-..+..|+.++...+. .......+
T Consensus 97 e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L-~~e~E~~lvq~I~~L~k~le~~~k---------------~~e~~~~~ 160 (294)
T COG1340 97 EKRNEFNLGGRSIKSLEREIERLEKKQQTSVL-TPEEERELVQKIKELRKELEDAKK---------------ALEENEKL 160 (294)
T ss_pred HHhhhhhccCCCHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 5544331 2223444444444444443311 022445555555556655555442 12233445
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 765 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 765 ~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
+.+.++++.++....++++....|..+-+.+-.+...+-..+..+..+.+.+.+++-++......+.+++...+.....+
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666566666666677777777777777777777777777777777777777777777666655
Q ss_pred h
Q 001324 845 G 845 (1100)
Q Consensus 845 e 845 (1100)
+
T Consensus 241 ~ 241 (294)
T COG1340 241 E 241 (294)
T ss_pred H
Confidence 4
No 89
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.029 Score=71.06 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
.++.+..+...+..++.++|+.+.++.++...-+......+++..++..+.+....+..+ |.+-..+|...-.-+.+
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~---l~e~~~~l~~~t~~~~~ 479 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERE---LDEILDSLKQETEGIRE 479 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhHH
Confidence 345556666677778888888888888887777777777777777777777665555544 44445556666677778
Q ss_pred HHHHHHHhHHHHhhhhhhhhh
Q 001324 833 ELLAARESMHSRGAAMQTVNG 853 (1100)
Q Consensus 833 EL~~~~~~~~~~e~q~q~v~~ 853 (1100)
|+...+.....|..++..+.+
T Consensus 480 e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 480 EIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776654443
No 90
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.76 E-value=0.071 Score=66.18 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=35.6
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 001324 595 IGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 595 ~~~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~ 657 (1100)
..++....++.+.+.+..++..+.....++++|...- ++-+..+.+|++.-...+..+.
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e----~~nr~~v~~l~~~y~~~rk~ll 157 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESE----EKNREEVEQLKDLYRELRKSLL 157 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888888888888887555322 2222234444444444444443
No 91
>PRK03918 chromosome segregation protein; Provisional
Probab=97.76 E-value=0.12 Score=67.80 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001324 604 DLLVEQVKMLAGEIAFSSSNLK 625 (1100)
Q Consensus 604 d~l~eq~k~l~~e~~~l~~el~ 625 (1100)
+.+++..+.+.+.+..+...+.
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~ 186 (880)
T PRK03918 165 KNLGEVIKEIKRRIERLEKFIK 186 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.75 E-value=0.033 Score=57.67 Aligned_cols=136 Identities=22% Similarity=0.202 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHH
Q 001324 688 SQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQ 767 (1100)
Q Consensus 688 r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~l 767 (1100)
..+.+.+.--.++..++..|+..+..+ -.....|.+.+..|..++..++ .+-....++
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~----ee~na~L~~e~~~L~~q~~s~Q------------------qal~~aK~l 65 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETA----EEGNAQLAEEITDLRKQLKSLQ------------------QALQKAKAL 65 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 333333333334444555555555555 2233444444444444444332 122334457
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 768 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 768 k~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
.+|+|.||.....+.+++..|..+.+.++.|...+......|..+...+..+...+..+...|..+-...+..+-+++
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 778888888877777777777777666666666555555555555555555555555555455444444444444443
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.75 E-value=0.0043 Score=78.18 Aligned_cols=182 Identities=21% Similarity=0.291 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhH
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECS 720 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~ 720 (1100)
++..+++.+...+.++.+|..++..--. .+.++++.+.+.+.++.+.-.|-+....++..+.+.++.+ .+
T Consensus 282 ql~~~~~~i~~~qek~~~l~~ki~~~~~------k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~----~r 351 (1074)
T KOG0250|consen 282 QLNNQEEEIKKKQEKVDTLQEKIEEKQG------KIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDL----RR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----HH
Confidence 4556777777777777776666553222 2334444445555555555555555555555555555555 33
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001324 721 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV-QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 799 (1100)
Q Consensus 721 ~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~-~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~ 799 (1100)
+..++..++...+..+..++.. .+.++.++..++++. +.+..++++...+++.|..+.+.+..+...|..+.
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~-------~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKE-------VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444321 123344555555554 55666666666666666666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 800 SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 800 ~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
...++..+.-..+......++..|.........+|...++
T Consensus 425 ~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 425 NEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777766666666666666666666666666655443
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.74 E-value=0.0043 Score=74.10 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 001324 925 KKVEESKRREEALENDLANMWVLVAKLKKEV 955 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el~~~~~lv~kL~ke~ 955 (1100)
..+..++.++..|..+|..+-+.--.|..|+
T Consensus 349 ~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI 379 (546)
T KOG0977|consen 349 AEIAKMREECQQLSVELQKLLDTKISLDAEI 379 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhHHHhHH
Confidence 4555555555555555544444444444444
No 95
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.71 E-value=0.0027 Score=78.77 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
++..+...+..+++....++..+..++..+.+.|..+ ..+..+++..+..++..+..++
T Consensus 224 ~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l----~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 224 ELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL----NTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444455555555 3445555666666666665554
No 96
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.71 E-value=0.092 Score=64.99 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001324 719 CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV-DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 797 (1100)
Q Consensus 719 ~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~-~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~ 797 (1100)
..++++|.+++..|+..+-.+....-+..... .++.++ .++.+++..++.++..++..+....+.-..|..+...+..
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~l-q~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~ 237 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSAL-QSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLG 237 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55556666666555554433332111101111 122222 2455555556666666655544443333444444444333
No 97
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.70 E-value=0.024 Score=70.33 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=12.9
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
+..+-+|++|+|||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34566899999998754
No 98
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.67 E-value=0.029 Score=70.38 Aligned_cols=216 Identities=23% Similarity=0.294 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHH
Q 001324 642 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSE 721 (1100)
Q Consensus 642 ieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~ 721 (1100)
+..|+.+++.++..++ .+|. ...||++++..|...-+....||..+..+++.||..+... ...
T Consensus 420 ~~rLE~dvkkLraeLq-------~~Rq------~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L----~~a 482 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQ-------SSRQ------SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL----VQA 482 (697)
T ss_pred HHHHHHHHHHHHHHHH-------hhhh------hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4456666666666665 2222 2338999988888877778888999999999999888887 444
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001324 722 NKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASY 801 (1100)
Q Consensus 722 ~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~ 801 (1100)
...=+..+..|+..|.+.+. ....+++++.. . ++.|.++|...
T Consensus 483 Rq~DKq~l~~LEkrL~eE~~--------------~R~~lEkQL~e-------E----------------rk~r~~ee~~a 525 (697)
T PF09726_consen 483 RQQDKQSLQQLEKRLAEERR--------------QRASLEKQLQE-------E----------------RKARKEEEEKA 525 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH-------H----------------HHHHhHHHHhh
Confidence 44444445555555544221 11112222111 1 11111111111
Q ss_pred HHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhccccccccccc
Q 001324 802 AKEL--ASAAA-VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEIS 878 (1100)
Q Consensus 802 ~~ee--~~~l~-~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~ 878 (1100)
+.-. ...-. .-.+.+..+...|+.+..+|+.||..+.+....+|..++ +.|.|- ++ +
T Consensus 526 ar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~----~lr~~~-------~e------~--- 585 (697)
T PF09726_consen 526 ARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ----ELRKYE-------KE------S--- 585 (697)
T ss_pred hhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------hh------h---
Confidence 1100 00000 112234455555555556666666666666555553221 111111 00 0
Q ss_pred CcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 001324 879 GVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 941 (1100)
Q Consensus 879 ~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el 941 (1100)
......+...+++..++-.-||.-|.++.+++-+|=.-|-+.+.+++-++..+
T Consensus 586 ----------~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~ 638 (697)
T PF09726_consen 586 ----------EKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQL 638 (697)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11334566777888888888999999999888887766666666666555544
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.67 E-value=0.16 Score=63.28 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 902 RKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 902 ~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
..+++..|+.+|..-...-.+.+..+--++.....+-.+|+++.-.|=-.+.+.+.
T Consensus 417 ~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPn 472 (717)
T PF09730_consen 417 DQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPN 472 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence 35578888888888888878888888888888888888888888777666655544
No 100
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.66 E-value=0.098 Score=70.83 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 001324 897 LELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLA 942 (1100)
Q Consensus 897 ~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~ 942 (1100)
.......+.+..|+.+...-.....+++.+++++..++..|..-.-
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap 603 (1486)
T PRK04863 558 QLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 3344444444555555444444555566677777777776665443
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.66 E-value=0.031 Score=69.33 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 001324 891 DPDDLKLELQARKQREAALEAALAEKEFLEDE-YRKKVEESKRREEALENDLANMWVLVAKLKKEV 955 (1100)
Q Consensus 891 ~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~e-l~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~ 955 (1100)
........+....+.+..|..+|.. ..+.-. ..+.++++..++..|..+...+-+-+..+..-+
T Consensus 442 ip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~I 506 (569)
T PRK04778 442 LPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLI 506 (569)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777788888888776 444333 335777777777777777766665555555443
No 102
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.65 E-value=0.054 Score=70.87 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhh
Q 001324 800 SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG 853 (1100)
Q Consensus 800 ~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~ 853 (1100)
...-+.|.++..++....++.+.+..++.+.+..+...+.+....++|++|+..
T Consensus 261 ~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 261 VAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334467899999999999999999999999999999999999999999988775
No 103
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.65 E-value=0.045 Score=73.93 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCccccC
Q 001324 175 GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~ 192 (1100)
+++.-+|++|+|||.+|-
T Consensus 28 ~~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 28 LVTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 355677999999999874
No 104
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.64 E-value=2.5e-05 Score=84.40 Aligned_cols=47 Identities=30% Similarity=0.728 Sum_probs=36.8
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhhhc----CCCCCCCcccccceeec
Q 001324 1051 SHMCKVCFESPTA--------AILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFA 1098 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~--------~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~i~~ 1098 (1100)
...|.||++...+ .++.||+|. ||..|... ...||+||.++...++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4589999996432 467789998 99999532 36799999999987754
No 105
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.63 E-value=8.9e-07 Score=108.34 Aligned_cols=249 Identities=21% Similarity=0.234 Sum_probs=147.1
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEe----eCCCEEEec----CCCCCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWY----ADGDKIVRN----EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~----~~~~~~~~~----~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l 170 (1100)
..+++|+|+|+|........-....+. .-..++..+ .......|.||.+|.+...+..++. ...-+++..+
T Consensus 304 ~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 382 (568)
T COG5059 304 NCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFR-EQSQLSQSSL 382 (568)
T ss_pred CccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHH-HHHhhhhhhh
Confidence 349999999999885421110000000 000111111 1123346899999999888888887 3455677777
Q ss_pred cCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCC--ceEEEEEeeeeeecceeeecCCCC-CCcc-e
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG--REFLLRVSYLEIYNEVINDLLDPT-GQNL-R 246 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~--~~~~v~vS~~EIyne~i~DLL~~~-~~~l-~ 246 (1100)
+| +++||++++|+++||. ....++..-.+..+|..+..... ..+...+-+++||-....+++... +... .
T Consensus 383 ~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 456 (568)
T COG5059 383 SG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTK 456 (568)
T ss_pred hh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 88 9999999999999996 33446666666788877764432 233344445555511111222110 0000 0
Q ss_pred EEeCC--CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEe
Q 001324 247 VREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1100)
Q Consensus 247 i~e~~--~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVD 324 (1100)
+.... ....+..++ .......+...+. .....+..+.+..|..++++|.+|+........... .. . ++.||
T Consensus 457 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~--~~--~-~n~~~ 529 (568)
T COG5059 457 IHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK--EL--S-LNQVD 529 (568)
T ss_pred HHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhH--HH--H-hhhhh
Confidence 00000 000000000 0011111111222 456788889999999999999999876644322111 01 1 79999
Q ss_pred cCCCCCcccccchhhhhhhhHHhhhHHHHHHHHHHhh
Q 001324 325 LAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLS 361 (1100)
Q Consensus 325 LAGsE~~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~ 361 (1100)
|||+|+.....-|.++++...+|++|..+|.+|.++.
T Consensus 530 ~~~~e~~~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 530 LAGSERKVSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred ccccccchhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 9999987667789999999999999999999998763
No 106
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.5e-05 Score=80.27 Aligned_cols=47 Identities=28% Similarity=0.761 Sum_probs=36.3
Q ss_pred cccccccccccceE--EeCCCCcccchhhhhcC----CCCCCCcccccc--eeecc
Q 001324 1052 HMCKVCFESPTAAI--LLPCRHFCLCKSCSLAC----SECPICRTKISD--RLFAF 1099 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~v--l~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~--~i~~f 1099 (1100)
..|+||++....-+ -..|||. ||..|.... .+||+||+.|+. +++||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 48999999766655 3799998 999997544 679999987765 44555
No 107
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.62 E-value=1.7e-05 Score=61.30 Aligned_cols=34 Identities=32% Similarity=1.074 Sum_probs=27.7
Q ss_pred cccccccccce-EEeCCCCcccchhhhhc----CCCCCCC
Q 001324 1054 CKVCFESPTAA-ILLPCRHFCLCKSCSLA----CSECPIC 1088 (1100)
Q Consensus 1054 C~iC~~~~~~~-vl~pC~H~~~C~~C~~~----~~~CP~C 1088 (1100)
|+||++...+. ++.||||. ||..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 89999999999 78999999 99999643 3679998
No 108
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.62 E-value=0.071 Score=55.31 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV 757 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~ 757 (1100)
+|-..+..|.-.-+....|..++...+.-+++--..- ..++.+|+.+.+.+++-+...+.
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L----~~e~~~L~~q~~s~Qqal~~aK~---------------- 64 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQL----AEEITDLRKQLKSLQQALQKAKA---------------- 64 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3444444444444444444444444443333322222 33445555555566555555442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
++.++..++...-.+......|..+...+...++.|..++..+.+++.++..+.+.+..+...|...+..|...+-..
T Consensus 65 --l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 65 --LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 234444444444444444445555566666667777777777777777777777777777777777777777666444
Q ss_pred HHhHHHHh
Q 001324 838 RESMHSRG 845 (1100)
Q Consensus 838 ~~~~~~~e 845 (1100)
..-..+.+
T Consensus 143 e~l~~~~d 150 (193)
T PF14662_consen 143 ESLICQRD 150 (193)
T ss_pred HHHHHHHH
Confidence 44444443
No 109
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=1.9e-05 Score=91.49 Aligned_cols=43 Identities=35% Similarity=0.939 Sum_probs=37.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccccc
Q 001324 1051 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKISD 1094 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~---------~~~CP~Cr~~i~~ 1094 (1100)
...|+||+..+...+.+-|||. ||..|... .+.||+||..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 5589999999999999999998 99999432 2679999999976
No 110
>PRK11637 AmiB activator; Provisional
Probab=97.60 E-value=0.012 Score=70.34 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 785 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 836 (1100)
Q Consensus 785 ~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~ 836 (1100)
...+...+..|+.+....+.+..++..+.......+..|..+..+|...|..
T Consensus 200 ~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 200 LYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555545555555555555555555555555555554443
No 111
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.60 E-value=0.01 Score=65.11 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 001324 903 KQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVG 956 (1100)
Q Consensus 903 ~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~ 956 (1100)
..++..|...|..-..+-+.+.+++.-|..++..|+.+|...+.-...++.++.
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444455556677777777777777777777777777776653
No 112
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.60 E-value=3e-05 Score=61.69 Aligned_cols=37 Identities=38% Similarity=1.006 Sum_probs=31.7
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhcCC----CCCCCcc
Q 001324 1053 MCKVCFESP---TAAILLPCRHFCLCKSCSLACS----ECPICRT 1090 (1100)
Q Consensus 1053 ~C~iC~~~~---~~~vl~pC~H~~~C~~C~~~~~----~CP~Cr~ 1090 (1100)
.|.+|+... ...++++|||. ||..|..... .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 489999876 46889999999 9999987776 7999985
No 113
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.56 E-value=0.054 Score=60.94 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 768 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL 830 (1100)
Q Consensus 768 k~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L 830 (1100)
.++-..++.++..+.++...|..+.+-|-.+...+..-+.++..+..+|..+..+.+.+...|
T Consensus 143 t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666666666666666666666666666666666666655554444
No 114
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.55 E-value=0.24 Score=59.91 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAV-------ELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~-------E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
+-+++..++.++++-+-...+|+.....|...+..+..+.....-+.+.+.. +-+++-..+.+|+..+.+|+.
T Consensus 469 yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrn 548 (786)
T PF05483_consen 469 YSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRN 548 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666544333344444444444444444444444433333333 334444455556666666666
Q ss_pred HHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 001324 833 ELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAA 912 (1100)
Q Consensus 833 EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~e 912 (1100)
+|...++.+..-...+ ...++..-+..+. ..-..-.-.+.+..++.....|...
T Consensus 549 eles~~eel~~k~~Ev--------------~~kl~ksEen~r~------------~e~e~~~k~kq~k~lenk~~~LrKq 602 (786)
T PF05483_consen 549 ELESVKEELKQKGEEV--------------KCKLDKSEENARS------------IECEILKKEKQMKILENKCNNLRKQ 602 (786)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHhhhHHHhhHH------------HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6666666555443222 1111111110000 0000111233444555556666666
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 913 LAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 913 l~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
++.+...-++|+..-+.++++....-..+.-+...|.+|+.++..
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~ 647 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELEN 647 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665555555556666666665543
No 115
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.55 E-value=0.13 Score=63.12 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001324 434 IKKYQREISSLKEELDQ 450 (1100)
Q Consensus 434 ~~~lq~eI~~Lk~eL~q 450 (1100)
+...++++.+++.++..
T Consensus 36 L~~~qeel~~~k~~l~~ 52 (522)
T PF05701_consen 36 LEKAQEELAKLKEQLEA 52 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666654
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.54 E-value=0.18 Score=60.53 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 841 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~ 841 (1100)
+...+.++..|.....+++.-+..++++...++-.|+.++..|+.+++......
T Consensus 219 l~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 219 LFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 556677788889999999999999999999999999999999999987655443
No 117
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.52 E-value=0.26 Score=57.52 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
...+..++.++.+-..++.++.++++++..+|..... +. +++...|-.+|.-++..
T Consensus 72 e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~----q~---r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 72 ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV----QE---REQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHhc
Confidence 3333444555555555556666666666666655511 11 44555666667666653
No 118
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.49 E-value=0.063 Score=67.39 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=31.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 781 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 781 l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
|..+-..|++++.+||.-.+.=+-.--.|..-+.++...++-++.+..+=..|+..++..++++-
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555444444444444444445555555555555555555555555444443
No 119
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.097 Score=66.09 Aligned_cols=187 Identities=12% Similarity=0.125 Sum_probs=91.7
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 001324 595 IGGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV--QIQNLEREIQEKRRQMRILEQRIIENGEASMA 672 (1100)
Q Consensus 595 ~~~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~--qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~ 672 (1100)
+++...++||.+++.+.-.+.+.......++...-+.-..++.... .-..|+++.......+.--+- ..--+.....
T Consensus 154 gSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qL-fhvE~~i~k~ 232 (1141)
T KOG0018|consen 154 GSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWEL-FHVEACIEKA 232 (1141)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHhhh
Confidence 5667789999999888888877777777666555444333222111 112344444333333221000 0000112345
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 001324 673 NASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGT 752 (1100)
Q Consensus 673 ~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e 752 (1100)
..+++.+.+.+..+...++.++.++++...+...+--++..- -..+.+..+.+.. +.++-..+............
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~----Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~ 307 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKV----DKKISEKEEKLAE-RPELIKVKENASHLKKRLEE 307 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhh-hhHHhhcchhhccchhHHHH
Confidence 556777777777777777777777776554444433333332 1122222222222 11222222211111111223
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSG 787 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~ 787 (1100)
.+..+...++....++..++.++.++..+.-.++.
T Consensus 308 ~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~ 342 (1141)
T KOG0018|consen 308 IEKDIETAKKDYRALKETIERLEKELKAVEGAKEE 342 (1141)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666665555444433
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.48 E-value=0.091 Score=58.77 Aligned_cols=88 Identities=23% Similarity=0.305 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
..++.+.+++..+++|...|+.+...|...-..+..+.+.|-.+. -..+..+..++..|.+++.+-..++.+..+|+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999998888876666666666664442 34556666677777777777777777777777
Q ss_pred HHHHHhHHHHh
Q 001324 835 LAARESMHSRG 845 (1100)
Q Consensus 835 ~~~~~~~~~~e 845 (1100)
..+...+..++
T Consensus 237 t~LlsqivdlQ 247 (306)
T PF04849_consen 237 TSLLSQIVDLQ 247 (306)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.42 E-value=0.048 Score=68.42 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001324 433 LIKKYQREISSLKEELDQLK 452 (1100)
Q Consensus 433 ~~~~lq~eI~~Lk~eL~qlk 452 (1100)
.+..++++|..+.+.|.+..
T Consensus 1233 ~~~~lr~~l~~~~e~L~~~E 1252 (1758)
T KOG0994|consen 1233 ATESLRRQLQALTEDLPQEE 1252 (1758)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 34455555555555555443
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.11 Score=62.94 Aligned_cols=15 Identities=7% Similarity=0.383 Sum_probs=8.5
Q ss_pred CCchhHHHHHHHHHh
Q 001324 198 PGIIPLAIKDVFSII 212 (1100)
Q Consensus 198 ~Giipr~~~~lF~~i 212 (1100)
.||-+.++..|+...
T Consensus 44 S~LP~~VLaqIWALs 58 (1118)
T KOG1029|consen 44 SGLPTPVLAQIWALS 58 (1118)
T ss_pred cCCChHHHHHHHHhh
Confidence 355566666666543
No 123
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.38 E-value=0.63 Score=56.42 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 001324 925 KKVEESKRREEALENDLANMWVLVAKLKKEVG 956 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~ 956 (1100)
++-.|.-.-...|+.+|.+++.-+..|++++.
T Consensus 732 ~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk 763 (786)
T PF05483_consen 732 KKEQEQSSHKASLELELSNLKNELSSLKKQLK 763 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444455566666666666666666553
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.37 E-value=0.023 Score=61.52 Aligned_cols=50 Identities=36% Similarity=0.421 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 001324 892 PDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDL 941 (1100)
Q Consensus 892 ~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el 941 (1100)
.+.+..+++...+++.+|+.+|..-..+.+.++..+++++.+...+++++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888887766666666666666666666666666
No 125
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.36 E-value=0.82 Score=57.23 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLE-HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 823 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e-~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL 823 (1100)
++.+++..|+.-+...+++|-.||.- +...+.++-+|.+++.||+.|.....+...+|..|++.|.+....-
T Consensus 587 ~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATF 659 (717)
T PF09730_consen 587 ELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATF 659 (717)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666677888888876 3445567788999999999999999999999999999888766553
No 126
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.52 Score=59.12 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=8.0
Q ss_pred eccCCCCCcccc
Q 001324 180 YGVTSSGKTHTM 191 (1100)
Q Consensus 180 YGqtgSGKT~Tm 191 (1100)
.|..||||+--+
T Consensus 31 VGrNGSGKSNFF 42 (1200)
T KOG0964|consen 31 VGRNGSGKSNFF 42 (1200)
T ss_pred ecCCCCCchhhH
Confidence 477778886544
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.33 E-value=0.26 Score=55.79 Aligned_cols=216 Identities=17% Similarity=0.177 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc-ccchHHHHHHHH
Q 001324 606 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMA-NASMVDMQQTVT 684 (1100)
Q Consensus 606 l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~-~~~~~el~~~~~ 684 (1100)
-.|.+.+|.+++...+.|.+ ..+.-++.|+..-+..+.+...+...........-. ...-..|.+.
T Consensus 7 K~eAL~IL~~eLe~cq~ErD-----------qyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~l-- 73 (319)
T PF09789_consen 7 KSEALLILSQELEKCQSERD-----------QYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQL-- 73 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHH--
Confidence 35677799999999999987 334556677777777777776555443333322111 1111222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHH
Q 001324 685 RLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKV 764 (1100)
Q Consensus 685 ~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~ 764 (1100)
+.+-.++...+..++..|.+.|.++ --.++=||+++...+......-..+. ......+-.++..+..++
T Consensus 74 -----L~~sre~Nk~L~~Ev~~Lrqkl~E~----qGD~KlLR~~la~~r~~~~~~~~~~~--~~ere~lV~qLEk~~~q~ 142 (319)
T PF09789_consen 74 -----LSESREQNKKLKEEVEELRQKLNEA----QGDIKLLREKLARQRVGDEGIGARHF--PHEREDLVEQLEKLREQI 142 (319)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHHHHHH
Confidence 2333333334444445555555554 22333344433322221111000000 000011112223333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 765 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 765 ~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
..++-++-.+--|..++..+-+..+.+-.+|..|..|+-.--..-...++.|..+.+.|..+..++++|..-.+.++..|
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444555555666666555543323333567777777777777777777777777777666
Q ss_pred h
Q 001324 845 G 845 (1100)
Q Consensus 845 e 845 (1100)
.
T Consensus 223 K 223 (319)
T PF09789_consen 223 K 223 (319)
T ss_pred H
Confidence 5
No 128
>PHA02926 zinc finger-like protein; Provisional
Probab=97.30 E-value=6.2e-05 Score=78.53 Aligned_cols=45 Identities=31% Similarity=0.832 Sum_probs=34.2
Q ss_pred cccccccccc---------cceEEeCCCCcccchhhhhcC----------CCCCCCcccccceee
Q 001324 1052 HMCKVCFESP---------TAAILLPCRHFCLCKSCSLAC----------SECPICRTKISDRLF 1097 (1100)
Q Consensus 1052 ~~C~iC~~~~---------~~~vl~pC~H~~~C~~C~~~~----------~~CP~Cr~~i~~~i~ 1097 (1100)
..|.||++.. +--++.+|+|. ||..|.... ..||+||..+...++
T Consensus 171 ~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 171 KECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 4799999852 23578899999 999995322 239999999886654
No 129
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.30 E-value=7.3e-05 Score=59.44 Aligned_cols=36 Identities=36% Similarity=0.973 Sum_probs=28.8
Q ss_pred ccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001324 1053 MCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICR 1089 (1100)
Q Consensus 1053 ~C~iC~~~~---~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr 1089 (1100)
.|.||++.. ..++.+||||. ||..|... ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 599999965 57888999998 99999543 36799997
No 130
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.24 Score=58.13 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 679 l~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+--++..|..++.|.+.+++-...+++.+++-|...
T Consensus 41 lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~ 76 (772)
T KOG0999|consen 41 LLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQY 76 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666777776666666666666555
No 131
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.27 E-value=0.79 Score=55.32 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 901 ARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 901 a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
-++++-+.|+.|+..-......+.-++.++..+.+++.....-.++++.+|...+..
T Consensus 380 lLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~~ 436 (629)
T KOG0963|consen 380 LLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLLK 436 (629)
T ss_pred HHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHhh
Confidence 344555666666655554444444566666667777776666667777888888765
No 132
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.24 E-value=7.1e-05 Score=94.93 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 635 PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 635 ~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
...++.++++|++....+-..+.+||..+..++. ....+..+..++.+|..++.+...+.+.+.-++..|++++..+
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~---~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARA---LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888888888888888888887765543 3345667888888888888887777778888888888888777
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHh
Q 001324 715 LIHECSENKKLQEKVNLLEQQLAC 738 (1100)
Q Consensus 715 ~~~e~~~~~el~~~~~~Lq~el~~ 738 (1100)
..+...+..+...|++.++.
T Consensus 404 ----~~eke~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 404 ----EEEKERLQEERDSLRETNEE 423 (713)
T ss_dssp ------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544433
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.23 E-value=0.2 Score=58.38 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 786 SGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 786 ~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
.....+.++|..-....+....++..++..-..+...|.+....|..++......++
T Consensus 192 ~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 192 SEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888899999999999999999999999998888776555
No 134
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.00012 Score=84.86 Aligned_cols=43 Identities=28% Similarity=0.747 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1051 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
...|.||++...+.|+.||||. ||..|... ...||+|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3489999999999999999999 99999653 2569999998764
No 135
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.22 E-value=0.68 Score=57.39 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=98.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccc
Q 001324 597 GMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANAS 675 (1100)
Q Consensus 597 ~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~ 675 (1100)
++....++.+.+++..++.++.....++++|.+.- ++-+..+.+|++.-...+..+. ..+.. .. .
T Consensus 97 ~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e----~~nr~~i~~l~~~y~~lrk~ll-------~~~~~~G~---a 162 (560)
T PF06160_consen 97 KKAKQAIKEIEEQLDEIEEDIKEILDELDELLESE----EKNREEIEELKEKYRELRKELL-------AHSFSYGP---A 162 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------Hhhhhhch---h
Confidence 34456777777888888888888888877555322 2222344455555555554444 11111 11 1
Q ss_pred hHHHHHHHHHHHHHHHHHH------------HHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCC
Q 001324 676 MVDMQQTVTRLMSQCNEKA------------FELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDK 743 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~------------~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~ 743 (1100)
...+..++..+.....+-. +.+..+..++..|+..++.-..=...-...+-.++..|+.-...+....
T Consensus 163 ~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~g 242 (560)
T PF06160_consen 163 IEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEG 242 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCC
Confidence 2233333333333333222 2222444444445555444422112222333344444444444433321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 744 SAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEH--VQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 821 (1100)
Q Consensus 744 ~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~--~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~ 821 (1100)
=.- ...+....+..+++++......|+++.-+. ..+.+-.+.+...-.-++.|..... ........+.+.+.
T Consensus 243 y~l--~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~----~V~~~~~~l~~~l~ 316 (560)
T PF06160_consen 243 YYL--EHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKK----YVEKNLKELYEYLE 316 (560)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHH
Confidence 000 012445555555555555444443333221 0011111122223333333332222 12344566667777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001324 822 KLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 822 kL~~qn~~L~~EL~~~~~ 839 (1100)
++..+|..|..|+...+.
T Consensus 317 ~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 317 HAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777664443
No 136
>PRK01156 chromosome segregation protein; Provisional
Probab=97.16 E-value=1.7 Score=57.19 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.6
Q ss_pred eEEeeccCCCCCccc
Q 001324 176 TVFAYGVTSSGKTHT 190 (1100)
Q Consensus 176 ti~aYGqtgSGKT~T 190 (1100)
..+-+|++|||||..
T Consensus 25 i~~I~G~NGsGKSsi 39 (895)
T PRK01156 25 INIITGKNGAGKSSI 39 (895)
T ss_pred eEEEECCCCCCHHHH
Confidence 456789999999876
No 137
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.74 Score=58.58 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 719 CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLE 777 (1100)
Q Consensus 719 ~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e 777 (1100)
+.+..++..++.+|+-+|++.+. .+....+...++.+..++.+++.++..
T Consensus 780 a~k~~ef~~q~~~l~~~l~fe~~---------~d~~~~ve~~~~~v~~~~~~~~~~~~~ 829 (1141)
T KOG0018|consen 780 AKKRLEFENQKAKLENQLDFEKQ---------KDTQRRVERWERSVEDLEKEIEGLKKD 829 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhheec---------ccHHHHHHHHHHHHHHHHHhHHhhHHH
Confidence 33455566666666666666554 355566666777777777777766665
No 138
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.93 Score=53.50 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001324 906 EAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKL 951 (1100)
Q Consensus 906 ~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL 951 (1100)
+.-|+.+|+.-.+.+.++..-+.+...+.+.-+.+|.+.+..|+.|
T Consensus 320 iqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l 365 (772)
T KOG0999|consen 320 IQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRL 365 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHH
Confidence 5556666666666666666555555555544444444444433333
No 139
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.13 E-value=0.00012 Score=79.93 Aligned_cols=41 Identities=29% Similarity=0.894 Sum_probs=36.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
.|.||++-..-.|+.||+|. ||.-|.... +.||.|+.++..
T Consensus 25 RC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 25 RCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 69999999999999999999 999997544 779999998764
No 140
>PRK01156 chromosome segregation protein; Provisional
Probab=97.12 E-value=1.5 Score=57.91 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 926 KVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 926 ~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
.+.++......+..++..+...++.++..+..
T Consensus 675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~ 706 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDAKANRARLESTIEI 706 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544
No 141
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.11 E-value=0.91 Score=56.33 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 757 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEV 820 (1100)
Q Consensus 757 ~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v 820 (1100)
++..+..+.....+|+.++.....=.++...+......+...+..+.+.++.+..|++.+...+
T Consensus 273 l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 273 LDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777888888888877666667777777888888888888888888888888887766
No 142
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00016 Score=77.47 Aligned_cols=42 Identities=38% Similarity=0.941 Sum_probs=35.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc------CCCCCCCccccc
Q 001324 1051 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA------CSECPICRTKIS 1093 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~------~~~CP~Cr~~i~ 1093 (1100)
..+|.+|++.+-..+-.||||. ||..|... ...||.||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 4589999999999999999999 99999544 234999999753
No 143
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.07 E-value=0.00019 Score=76.79 Aligned_cols=42 Identities=24% Similarity=0.617 Sum_probs=36.3
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
..|.||.....-.++.||||. ||.-|.... +.||+||.+...
T Consensus 26 lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 379999999999999999999 999997654 679999987543
No 144
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=1.4 Score=54.00 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 001324 925 KKVEESKRREEALENDLANMWVLVAKLKKE 954 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el~~~~~lv~kL~ke 954 (1100)
+.+..++++++..+.-..+|++..+.-..+
T Consensus 600 ~ev~qlk~ev~s~ekr~~rlk~vF~~ki~e 629 (716)
T KOG4593|consen 600 KEVAQLKKEVESAEKRNQRLKEVFASKIQE 629 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888777766666554444
No 145
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.04 E-value=0.00028 Score=57.68 Aligned_cols=41 Identities=32% Similarity=0.740 Sum_probs=35.9
Q ss_pred ccccccccccceEEeCCCCcccchhhh--hcCCCCCCCcccccc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCS--LACSECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~--~~~~~CP~Cr~~i~~ 1094 (1100)
.|..|......-+++||||+ +|..|. .+...||+|..+|+.
T Consensus 9 ~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 69999999888999999999 899995 456789999999864
No 146
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.01 E-value=0.0005 Score=87.52 Aligned_cols=88 Identities=19% Similarity=0.112 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
++...+..+..+...+.+++..+..++. .+....+.|+.+...+.+.+..+...+..+...+.+|+.+..-+.
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~-------~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~ 412 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELR-------ELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALAT 412 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444442 244445555566666666666677777777777777777777777
Q ss_pred HHHHHHHHhHHHHhh
Q 001324 832 KELLAARESMHSRGA 846 (1100)
Q Consensus 832 ~EL~~~~~~~~~~e~ 846 (1100)
+|....+..+..++.
T Consensus 413 kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 413 KERDYLRAQLKSYDK 427 (722)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhhh
Confidence 777766666666653
No 147
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=1 Score=55.09 Aligned_cols=15 Identities=20% Similarity=0.364 Sum_probs=9.7
Q ss_pred hhHHHHHHHhcCCce
Q 001324 161 AARPVVKAAMEGVNG 175 (1100)
Q Consensus 161 ~~~~lv~~~l~G~n~ 175 (1100)
++..||.-.|.|+..
T Consensus 73 IAmkLi~lkLqG~~l 87 (1118)
T KOG1029|consen 73 IAMKLIKLKLQGIQL 87 (1118)
T ss_pred HHHHHHHHHhcCCcC
Confidence 566666666776654
No 148
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.99 E-value=0.00043 Score=52.42 Aligned_cols=34 Identities=41% Similarity=1.174 Sum_probs=29.7
Q ss_pred cccccccccceEEeCCCCcccchhhhh-----cCCCCCCC
Q 001324 1054 CKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPIC 1088 (1100)
Q Consensus 1054 C~iC~~~~~~~vl~pC~H~~~C~~C~~-----~~~~CP~C 1088 (1100)
|.||++.....+++||||. ||..|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 9999965 33569988
No 149
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.98 E-value=0.00032 Score=55.21 Aligned_cols=34 Identities=35% Similarity=0.969 Sum_probs=25.7
Q ss_pred cccccccccceEEeCCCCcccchhhhhcC--------CCCCCC
Q 001324 1054 CKVCFESPTAAILLPCRHFCLCKSCSLAC--------SECPIC 1088 (1100)
Q Consensus 1054 C~iC~~~~~~~vl~pC~H~~~C~~C~~~~--------~~CP~C 1088 (1100)
|.||++-..+.|.++|||. ||..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999 999995432 249987
No 150
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.96 E-value=0.00054 Score=53.78 Aligned_cols=39 Identities=44% Similarity=1.081 Sum_probs=29.9
Q ss_pred ccccccccccce-EEeCCCCcccchhhhhc-----CCCCCCCcccc
Q 001324 1053 MCKVCFESPTAA-ILLPCRHFCLCKSCSLA-----CSECPICRTKI 1092 (1100)
Q Consensus 1053 ~C~iC~~~~~~~-vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i 1092 (1100)
.|.||++..... ++.||||. ||..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999988444 45559999 99999642 35699999764
No 151
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.95 E-value=1.9 Score=53.89 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 001324 604 DLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 604 d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~ 657 (1100)
|....++..+.++++.+...+..+..+........+.++..|+.++.+-+...+
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~q 382 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQ 382 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445566677888888888887755555444444444455555555444444443
No 152
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.24 Score=61.12 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADN--------------RILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 675 ~~~el~~~~~~L~r~l~ek~~Ele~~~ad~--------------~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
...+++.+..+|.-++.+++..--+++.+- ..|..++... ......+...+.+|++++..++
T Consensus 462 A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l----~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 462 AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTL----KASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999885554333332 2234444333 3344445555566666665555
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 741 GDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEV 820 (1100)
Q Consensus 741 ~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v 820 (1100)
. ...-+.+++......+|.++....++...-+.|+....+...+...+.....++..+++....+.
T Consensus 538 ~--------------~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~ 603 (698)
T KOG0978|consen 538 S--------------NESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR 603 (698)
T ss_pred H--------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22234455555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 001324 821 TKLSLQNAKLEKEL 834 (1100)
Q Consensus 821 ~kL~~qn~~L~~EL 834 (1100)
.+|+.++.+|...|
T Consensus 604 ~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 604 KRLEEELERLKRKL 617 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655554443
No 153
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.88 E-value=0.0003 Score=78.34 Aligned_cols=43 Identities=40% Similarity=0.954 Sum_probs=37.2
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccccee
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISDRL 1096 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~------~~CP~Cr~~i~~~i 1096 (1100)
.|.||-++.+++-+-||||+ +|..|-... ..||.||-.|.+.=
T Consensus 371 LCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 79999999999999999999 999994332 56999999887753
No 154
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.87 E-value=0.00025 Score=90.25 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV 640 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~ 640 (1100)
.+...++.++..|..++..+..+.+...-++......++.
T Consensus 61 ~e~~~~k~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~ 100 (722)
T PF05557_consen 61 AELIELKAQLNQLEYELEQLKQEHERAQLELEKELRELQR 100 (722)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665555444444333333333
No 155
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.85 E-value=0.00038 Score=54.35 Aligned_cols=34 Identities=38% Similarity=1.147 Sum_probs=29.1
Q ss_pred cccccccccceE-EeCCCCcccchhhhhc------CCCCCCC
Q 001324 1054 CKVCFESPTAAI-LLPCRHFCLCKSCSLA------CSECPIC 1088 (1100)
Q Consensus 1054 C~iC~~~~~~~v-l~pC~H~~~C~~C~~~------~~~CP~C 1088 (1100)
|.||++.....+ ++||||. ||..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999999988 9999999 99999533 3559988
No 156
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.84 E-value=0.66 Score=57.41 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 759 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 759 ~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
....++..++.+-|..+..+ .+.+..|+......+.+.....++.+.+..+.+.+..++..-+....+|..+++
T Consensus 405 ~s~~rl~~L~~qWe~~R~pL---~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e 478 (594)
T PF05667_consen 405 ASEQRLVELAQQWEKHRAPL---IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE 478 (594)
T ss_pred HHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555543 333444544444444444444444444444444444444444444444444443
No 157
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.76 E-value=0.81 Score=51.89 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchH
Q 001324 598 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 677 (1100)
Q Consensus 598 ~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~ 677 (1100)
+..-++|.++.|+..+..|+...+.++....-+-+.. +.+++....+-+..+ .++ ..++..+.
T Consensus 71 ~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~----~~El~~~r~e~~~v~-------~~~------~~a~~n~~ 133 (499)
T COG4372 71 SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAA----RSELQKARQEREAVR-------QEL------AAARQNLA 133 (499)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HHH------HHHHHHHH
Confidence 3345777777788777777777776665222211111 111111111111111 111 13333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
..++....+..+-.+..-+|.-+...-+.|++|++.. -.+.+.|+-.+.+|+-+..+|+
T Consensus 134 kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl----~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 134 KAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSL----QASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666665555556666666655 2245556655555554444444
No 158
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.76 E-value=0.00035 Score=88.73 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 001324 637 GSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 637 ~l~~qieeLed~l~~~k~~i~ 657 (1100)
.++.+++.|++++.+....+.
T Consensus 243 ~l~~ql~~L~~el~~~e~~~~ 263 (713)
T PF05622_consen 243 DLRAQLRRLREELERLEEQRD 263 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544433333
No 159
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.58 Score=57.65 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ 712 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~ 712 (1100)
+|+.+..+|...+.+...+...+.-+++.|..||.
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444444444444444444443
No 160
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00091 Score=73.54 Aligned_cols=45 Identities=31% Similarity=0.950 Sum_probs=38.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhh----cCCCCCCCcccccce
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSL----ACSECPICRTKISDR 1095 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~----~~~~CP~Cr~~i~~~ 1095 (1100)
....|+||+..+.++||.||+|. -|..|.. .++.|=.|...|...
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred ccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 44589999999999999999999 8999964 357799999987653
No 161
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.70 E-value=0.00084 Score=57.53 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=34.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKIS 1093 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~ 1093 (1100)
.|.||.+-..+.|+.||||. ||..|... -..||+|+.++.
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence 69999999999999999998 99999643 357999999874
No 162
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.69 E-value=2.1 Score=56.29 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001324 674 ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQ 708 (1100)
Q Consensus 674 ~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~Lq 708 (1100)
..+.+++.++.++.+.+....-|++....+..+-+
T Consensus 819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~ 853 (1294)
T KOG0962|consen 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQE 853 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888877775555444433
No 163
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.68 E-value=1.2 Score=49.05 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~ 680 (1100)
..++++..+..-|...|..+..+|.+..+.... .+.+|=..-+.+...+.+|+.. ......+..++|+
T Consensus 6 ~sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~-------~Vr~lLqqy~~~~~~i~~le~~-----~~~~l~~ak~eLq 73 (258)
T PF15397_consen 6 TSLQELKKHEDFLTKLNKELIKEIQDTEDSTAL-------KVRKLLQQYDIYRTAIDILEYS-----NHKQLQQAKAELQ 73 (258)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHH-------HHHHHHHHHHHHHHHHHHHHcc-----ChHHHHHHHHHHH
Confidence 356778888888888888888888866655432 3444444444555555544431 1122223334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.-..+....++..+.+++.+.+.+...+++|..-
T Consensus 74 e~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 74 EWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666666666555543
No 164
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.49 Score=58.28 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHh
Q 001324 349 SLLTLGTVIGKL 360 (1100)
Q Consensus 349 SL~~L~~vI~~L 360 (1100)
|+.++..||..=
T Consensus 337 siitvAevVRgn 348 (970)
T KOG0946|consen 337 SIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHhc
Confidence 455555555433
No 165
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=96.54 E-value=0.013 Score=49.74 Aligned_cols=49 Identities=24% Similarity=0.477 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHH----------hhHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 001324 904 QREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLK 952 (1100)
Q Consensus 904 ~r~~aLE~el~~k~~~~~el~----------~~leEl~~~~~~L~~el~~~~~lv~kL~ 952 (1100)
+++++|++||++|+.+.+||. +++++...+..+|..++.++...++.++
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999997 8999999999999999955555555443
No 166
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.50 E-value=0.64 Score=50.62 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+..++..+..+...+-+++.+++.+...+..++..++..
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555555554444
No 167
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.49 E-value=2 Score=47.96 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=41.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc----cccchHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHH
Q 001324 635 PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASM----ANASMVDMQQTVTRLMSQCNEKA---FELEIKSADNRIL 707 (1100)
Q Consensus 635 ~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~----~~~~~~el~~~~~~L~r~l~ek~---~Ele~~~ad~~~L 707 (1100)
..++..++.+++....+....++.|.+.+.+.++... .-.++..+.-.+.+|........ .+=..+-+.+..|
T Consensus 64 rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L 143 (294)
T COG1340 64 RDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKEL 143 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 3345556777777777777777777776665554432 22223333333333333222221 1111445556667
Q ss_pred HHHHHHh
Q 001324 708 QEQLQNK 714 (1100)
Q Consensus 708 qeqL~~a 714 (1100)
+.+|+.+
T Consensus 144 ~k~le~~ 150 (294)
T COG1340 144 RKELEDA 150 (294)
T ss_pred HHHHHHH
Confidence 7777776
No 168
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.48 E-value=0.65 Score=48.28 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHh
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHEC 719 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~ 719 (1100)
++++++.+..+....+-.++.+.....+. ......+.+....-.+-.|+..+-.-.|-.+.+|+...+++...+ -
T Consensus 33 KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~----E 108 (205)
T KOG1003|consen 33 KLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAA----E 108 (205)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----H
Confidence 44455555555555555555544444332 222233445555555566666666666667777777777777666 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 001324 720 SENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEA 799 (1100)
Q Consensus 720 ~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~ 799 (1100)
..+.+|.+.++.+...++. +...++.+.....+++.++
T Consensus 109 s~~~eLeEe~~~~~~nlk~------------------------------------------l~~~ee~~~q~~d~~e~~i 146 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKS------------------------------------------LSAKEEKLEQKEEKYEEEL 146 (205)
T ss_pred HHHHHHHHHHHHhHhHHHH------------------------------------------HHHHHHHHhhhHHHHHHHH
Confidence 3555555555444444333 2223333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 800 SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 800 ~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
.++.+-.+++-...+-+...|.+|+.+...|+..+...+..
T Consensus 147 k~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~k 187 (205)
T KOG1003|consen 147 KELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEK 187 (205)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence 55556566666666666666666666666666665555544
No 169
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.47 E-value=5.3 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=17.4
Q ss_pred ceeEEeeccCCCCCccc-------cCCCCCCCC
Q 001324 174 NGTVFAYGVTSSGKTHT-------MHGDQNSPG 199 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~T-------m~G~~~~~G 199 (1100)
++..+-+|+||||||.. +||.....|
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~ 57 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTPRLG 57 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc
Confidence 34556789999999754 466554333
No 170
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.47 E-value=0.23 Score=52.31 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
.+..+..++|.|+.++..... ....+-.-.+.|.-.+.++-.+..-=-+-|-.-+-.+-..|..|+.+|
T Consensus 132 ~~~~l~~e~erL~aeL~~er~---~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l 200 (202)
T PF06818_consen 132 ELGSLRREVERLRAELQRERQ---RREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALEREL 200 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777633222 233344455666666666665544444444444555555555555544
No 171
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0014 Score=70.98 Aligned_cols=41 Identities=32% Similarity=0.770 Sum_probs=32.7
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhhhcC-----CCCCCCccccc
Q 001324 1052 HMCKVCFESPT---AAILLPCRHFCLCKSCSLAC-----SECPICRTKIS 1093 (1100)
Q Consensus 1052 ~~C~iC~~~~~---~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~ 1093 (1100)
-.|.||+...+ .++++||.|. |-..|.... .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 37999998443 3788999998 999996543 56999999875
No 172
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.44 E-value=3.9 Score=51.30 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHH
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDE 759 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~ 759 (1100)
+.+++++.....+...+-..+-.++++.+.||..+ .....++.+....|..+|+.++...+......++....+..
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~----~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~ 498 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESA----EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALES 498 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33444444444433333334444455555555555 22333444445555555555444222211122234455566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHV 779 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~ 779 (1100)
++.++..+..+++++...+.
T Consensus 499 l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 499 LRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66677777777777766633
No 173
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.42 E-value=2.6 Score=49.17 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccch
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSN---LKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASM 676 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~e---l~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~ 676 (1100)
+....+|+|+-+.|......+... ++.-....-...++++..++.-+++|+..+.++..|-.++..-+-. ..+.
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is---~e~f 370 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS---TEQF 370 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCC---HHHH
Confidence 345566666666665544444332 3333334444567777888888888888888888877776644433 3367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001324 677 VDMQQTVTRLMSQCNEKAFELEIKSADNRI 706 (1100)
Q Consensus 677 ~el~~~~~~L~r~l~ek~~Ele~~~ad~~~ 706 (1100)
..|.+.+.+|.|.|+-..-+.+.+...+.+
T Consensus 371 e~mn~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 371 ELMNQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 789999999999988877777766655544
No 174
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.37 E-value=0.0011 Score=52.26 Aligned_cols=27 Identities=37% Similarity=0.987 Sum_probs=16.8
Q ss_pred cccccccccc----eEEeCCCCcccchhhhhcC
Q 001324 1054 CKVCFESPTA----AILLPCRHFCLCKSCSLAC 1082 (1100)
Q Consensus 1054 C~iC~~~~~~----~vl~pC~H~~~C~~C~~~~ 1082 (1100)
|+||.+ ..+ .+++||||. ||..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 899999 777 788999998 999996543
No 175
>PRK11281 hypothetical protein; Provisional
Probab=96.36 E-value=2.1 Score=56.81 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 001324 673 NASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGT 752 (1100)
Q Consensus 673 ~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e 752 (1100)
..++.++++.+.++..++.+.+..|......+..++.+.+.| -....+.+.+++.+..++..... ....-
T Consensus 120 ~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA----Q~~lsea~~RlqeI~~~L~~~~~------~~~~l 189 (1113)
T PRK11281 120 TLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA----QAALYANSQRLQQIRNLLKGGKV------GGKAL 189 (1113)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH----HHHHHHHHHHHHHHHHHHhCCCC------CCCcC
Confidence 334556666666777666666666666666666666666666 33445555555555555543221 11123
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEH 778 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~ 778 (1100)
.+.+...+.-|...++.+++..+++.
T Consensus 190 ~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 190 RPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888887776
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.35 E-value=1 Score=47.84 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhHHHH--HhhHHHHHHHHHHHHHHHHhHHH
Q 001324 896 KLELQARKQREAALEAALAEKE--FLEDEY--RKKVEESKRREEALENDLANMWV 946 (1100)
Q Consensus 896 k~~~~a~~~r~~aLE~el~~k~--~~~~el--~~~leEl~~~~~~L~~el~~~~~ 946 (1100)
...+.+...++..|+..++... .....+ .+++.++...+..|..++..+..
T Consensus 131 ~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 131 EQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666665443332 111111 26666666666666666633333
No 177
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.35 E-value=4.4 Score=50.34 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 808 AAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 808 ~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
+....+++-.+++.|.-.+...|+.|+......+.
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888888888776665544
No 178
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.31 E-value=6.7 Score=52.05 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
....|++|.++.....+....+..+..........+......+++.+.-.
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777777777777777777777776666666666666666664433
No 179
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=96.29 E-value=0.43 Score=57.85 Aligned_cols=216 Identities=18% Similarity=0.211 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Q 001324 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIH 717 (1100)
Q Consensus 638 l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~ 717 (1100)
+|..+.+........+-.+.++|++....-+-+- ...--..+|+..|.+++-++......|..|+++|..+..+
T Consensus 54 lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t------~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~ 127 (916)
T KOG0249|consen 54 LQRDIREAMAQKEDMEERITTLEKRFLNAQREST------SIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPK 127 (916)
T ss_pred HhhhhhhHHhhhcccccccchHHHHHHhccCCCC------CcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHh
Confidence 4455556666666666667777777664433322 3344456888888999988888888888888888877110
Q ss_pred --HhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH----HHH
Q 001324 718 --ECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGL----HVQ 791 (1100)
Q Consensus 718 --e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L----~~~ 791 (1100)
..-....|-+--..|++-++.+.... ......++....++.+++.+-+|+..+++...--.+.+..| .+.
T Consensus 128 l~qs~rae~lpeveael~qr~~al~~ae----e~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdEr 203 (916)
T KOG0249|consen 128 LQQSLRAETLPEVEAELAQRNAALTKAE----EHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDER 203 (916)
T ss_pred hHhHHhhhhhhhhHHHHHHHHHHHHHHH----HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH
Confidence 00001111111133444444433211 12234556666777777777777777777633233333222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh----hhhhhhhhhhhhhHH
Q 001324 792 NQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM----QTVNGVNRKYSDGMK 863 (1100)
Q Consensus 792 ~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~----q~v~~~~r~~l~~~~ 863 (1100)
-+-...|..++.+....|..+++.+...+..+.....+|..+.+.++....+++.+. +.+.|.-+.|.+...
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~~ 279 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERRR 279 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHH
Confidence 333444555566666666666666666665555555555555555555555544332 455555556655443
No 180
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.29 E-value=2 Score=45.74 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV 757 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~ 757 (1100)
.+...-++|..-+.-+.+|+..+...++..+++.... ....++...++.+++.++..|+.-..+ ... ...
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~----~~klk~~~~el~k~~~~l~~L~~L~~d--knL----~eR 120 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQEREL----ERKLKDKDEELLKTKDELKHLKKLSED--KNL----AER 120 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCc----hhH
Confidence 3333444555566666677776666666666666666 455566666666666666665542111 111 113
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEH 778 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~ 778 (1100)
+++..++..+..+++.....+
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444
No 181
>PRK09039 hypothetical protein; Validated
Probab=96.29 E-value=0.33 Score=56.31 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 826 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~q 826 (1100)
+.+..+..+..++..++.+..+.+..+..|..+.+.|+.+-..++.++..++...+....+++.+..+++.+.++
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666666666666666667777777777777777777777777766555
No 182
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.27 E-value=0.0022 Score=70.43 Aligned_cols=48 Identities=31% Similarity=0.817 Sum_probs=39.5
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccccee
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKISDRL 1096 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~------~~CP~Cr~~i~~~i 1096 (1100)
+++...|.||-..-+-..++||+|. +|..|+.+. ..||+||..-..++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 3344579999999999999999999 999998765 56999999765554
No 183
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.14 E-value=0.52 Score=52.41 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhh---hhhhhhhhHHh
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNG---VNRKYSDGMKA 864 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~---~~r~~l~~~~~ 864 (1100)
|+.++++|.++.....+.+.+...+...|++-+.++..+|++|+-.|.........-++.-|.++- +++.|.+.+..
T Consensus 104 L~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 104 LQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555555555555544444444444333333322221 45555555555
Q ss_pred hhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 001324 865 GRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLE 920 (1100)
Q Consensus 865 ~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~ 920 (1100)
.-++-+.+-.+ .++.-+.-+.+++.+++.|--|+..--+.+
T Consensus 184 eyQatf~eq~~---------------ml~kRQ~yI~~LEsKVqDLm~EirnLLQle 224 (401)
T PF06785_consen 184 EYQATFVEQHS---------------MLDKRQAYIGKLESKVQDLMYEIRNLLQLE 224 (401)
T ss_pred Hhhcccccchh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55544443221 233334555566666666555555444443
No 184
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=4.8 Score=48.53 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHH
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKR---LVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 679 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~---L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el 679 (1100)
.+.|++....|.+.+..++.-... -........+.++..+++-+.+++..+.....|.+.|---+ -.-.++..|
T Consensus 261 ~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~---iS~~dve~m 337 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG---ISGEDVERM 337 (581)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 344555555555554444433222 22222233444555555555555555555555554443222 222478899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.+...+|.+.+++..-+++.+...+-++..+.+.-
T Consensus 338 n~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~ 372 (581)
T KOG0995|consen 338 NLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF 372 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999998888887766555444
No 185
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.11 E-value=3.3 Score=46.61 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC----
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS---- 753 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~---- 753 (1100)
.|+.++.+|.+....+..+|+.+....=+|+-.|+.- +-.-...|.+++.+|..+-..|+...+...+....-
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~E---QE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~ 215 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQE---QEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTV 215 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHH
Confidence 3334444444444444445555444444455555444 111245566666666555555555544433322211
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 -----DEYVDELRKKVQSQETENEKLKLEH 778 (1100)
Q Consensus 754 -----~~~~~~l~~~~~~lk~elE~lk~e~ 778 (1100)
.+....+...+..+..|+..|+..+
T Consensus 216 ~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 216 NVSEENDTAERLSSHIRSLRQEVSRLRQQL 245 (310)
T ss_pred hhcccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1223444555666666666666655
No 186
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.08 E-value=0.0015 Score=66.51 Aligned_cols=54 Identities=22% Similarity=0.706 Sum_probs=43.1
Q ss_pred cCCCCccccccccccccccceEEeCCCCcccchhhhhc-C---CCCCCCcccccceeec
Q 001324 1044 QGNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-C---SECPICRTKISDRLFA 1098 (1100)
Q Consensus 1044 ~~~~~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-~---~~CP~Cr~~i~~~i~~ 1098 (1100)
..+...-|..|.||.....+.|+..|||. ||..|+.+ + ..|-+|.+..-+.+.+
T Consensus 189 ~~~~e~IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 189 SGPGEKIPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred cCCCCCCceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 33444567899999999999999999999 99999643 2 6699999887666543
No 187
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.04 E-value=0.0027 Score=53.75 Aligned_cols=39 Identities=41% Similarity=1.077 Sum_probs=21.4
Q ss_pred ccccccccccceE-EeCCCCcccchhhhhcC--CCCCCCcccc
Q 001324 1053 MCKVCFESPTAAI-LLPCRHFCLCKSCSLAC--SECPICRTKI 1092 (1100)
Q Consensus 1053 ~C~iC~~~~~~~v-l~pC~H~~~C~~C~~~~--~~CP~Cr~~i 1092 (1100)
.|.+|.+-....| ++-|.|. ||..|...+ ..||+|+.|.
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp S-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred CCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 7999999877774 7999999 999998766 6699999875
No 188
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.02 E-value=3.2 Score=46.75 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
.+.+.+.....+...+++||..|.+.+..+....-.+..-+.+|-......++--.+|..|+.++.+++.....-....+
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566677788888887777777777777777777777777777777788888888887777666666666
Q ss_pred HHHHHHH
Q 001324 832 KELLAAR 838 (1100)
Q Consensus 832 ~EL~~~~ 838 (1100)
+||...+
T Consensus 297 EElk~lR 303 (306)
T PF04849_consen 297 EELKTLR 303 (306)
T ss_pred HHHHHhh
Confidence 6655443
No 189
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=6 Score=48.70 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=18.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 672 ANASMVDMQQTVTRLMSQCNEKAFELEIKSAD 703 (1100)
Q Consensus 672 ~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad 703 (1100)
....+.++...+.++...+.++..+......+
T Consensus 149 ~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~ 180 (716)
T KOG4593|consen 149 KEDKLAELGTLRNKLDSSLSELQWEVMLQEMR 180 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677777777777776666555433333
No 190
>PRK09039 hypothetical protein; Validated
Probab=95.96 E-value=0.22 Score=57.79 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 001324 724 KLQEKVNLLEQQLAC 738 (1100)
Q Consensus 724 el~~~~~~Lq~el~~ 738 (1100)
+++.++..++.+|..
T Consensus 113 ~~~~~~~~l~~~L~~ 127 (343)
T PRK09039 113 AAEGRAGELAQELDS 127 (343)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333344444444443
No 191
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.90 E-value=1.2 Score=44.47 Aligned_cols=125 Identities=22% Similarity=0.188 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChH
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDE 755 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~ 755 (1100)
+..++..+..+.....+....+.....|+.........|..+|-. ++..+.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~---El~~Ha-------------------------- 55 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYER---ELVKHA-------------------------- 55 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhH--------------------------
Confidence 345555566666666666666666666666655555555333221 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 756 YVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 756 ~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
..-+.+..++.++..++..+..+... ....+..|......|.+.-..+..++..+..++..|..||.-|-..|+
T Consensus 56 ---~~~~~L~~lr~e~~~~~~~~~~l~~~---~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 56 ---EDIKELQQLREELQELQQEINELKAE---AESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123333444455554444333332 444455566666778888888888999999999999999999877665
No 192
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.88 E-value=2.2 Score=47.36 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchHHHH
Q 001324 609 QVKMLAGEIAFSSSNLK-------RLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQ 680 (1100)
Q Consensus 609 q~k~l~~e~~~l~~el~-------~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~ 680 (1100)
.++++...++.++..++ .-.-++.....-+++..-.|...+...+.....||.+|..+|.. .-+..+...-+
T Consensus 32 diei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq 111 (305)
T PF14915_consen 32 DIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQ 111 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444443 23334555556666666667777777777777777777766543 33333333334
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHh
Q 001324 681 QTVTRLMSQCNEKAFELE-----------IKSADNRILQEQLQNK 714 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele-----------~~~ad~~~LqeqL~~a 714 (1100)
..+..|...+..-..|-- .+...+..|-+||..|
T Consensus 112 ~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLska 156 (305)
T PF14915_consen 112 TSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKA 156 (305)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHH
Confidence 444444443332222211 2222334577777777
No 193
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.84 E-value=1.7 Score=53.64 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 759 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 759 ~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
++-+.+..+++|..++.... .+....|..-++....|..-.+=+++++.++.+.+.=++...+.+|.-|.-.|...-
T Consensus 459 ellk~~e~q~~Enk~~~~~~---~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrD 535 (861)
T PF15254_consen 459 ELLKVIENQKEENKRLRKMF---QEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRD 535 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHH
Confidence 34455555666666665554 334445777777777777778888888888888887777777788877777666666
Q ss_pred HhHHHHh
Q 001324 839 ESMHSRG 845 (1100)
Q Consensus 839 ~~~~~~e 845 (1100)
.++..++
T Consensus 536 aEi~RL~ 542 (861)
T PF15254_consen 536 AEIERLR 542 (861)
T ss_pred HHHHHHH
Confidence 6666665
No 194
>PLN02939 transferase, transferring glycosyl groups
Probab=95.81 E-value=7.1 Score=50.68 Aligned_cols=147 Identities=20% Similarity=0.200 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--hhH
Q 001324 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK--LIH 717 (1100)
Q Consensus 640 ~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a--~~~ 717 (1100)
.|++.|-.=|.-.+.-|..|-+-. -+.+..|.+-+.|| |.++.+++.|+.+|... ..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 187 (977)
T PLN02939 128 FQLEDLVGMIQNAEKNILLLNQAR----------------LQALEDLEKILTEK----EALQGKINILEMRLSETDARIK 187 (977)
T ss_pred ccHHHHHHHHHHHHhhhHhHHHHH----------------HHHHHHHHHHHHHH----HHHHhhHHHHHHHhhhhhhhhh
Confidence 466766666665555555222211 12334455555554 34566677777776654 111
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhccCCCC----CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001324 718 ECSENKKLQEKVNLLEQQLACQNGDKSA----GSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQ 793 (1100)
Q Consensus 718 e~~~~~el~~~~~~Lq~el~~l~~~~~~----~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~ 793 (1100)
.. .+-+..++-++++++.+...... .......+..++..++.+...+++.++-+|.++.+..+-. +.--
T Consensus 188 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 260 (977)
T PLN02939 188 LA---AQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETE----ERVF 260 (977)
T ss_pred hh---hhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----HHHH
Confidence 11 11122224445555554432211 1112234568888999999999999999999976666633 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001324 794 KLAEEASYAKELASAAAVEL 813 (1100)
Q Consensus 794 kle~e~~~~~ee~~~l~~E~ 813 (1100)
+|+.|.+.++.-.+.+...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 261 KLEKERSLLDASLRELESKF 280 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556655555555554444
No 195
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.80 E-value=0.36 Score=48.75 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVT 821 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~ 821 (1100)
..+.++++.+.++++.+...+....+.-......-..+++.+..+..........++.+..+++
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3567777777777777776665555544444455555555555555554444444444444444
No 196
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.0033 Score=68.43 Aligned_cols=47 Identities=19% Similarity=0.601 Sum_probs=40.3
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1096 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i 1096 (1100)
.-|..|.||..-..+-|+..|+|. ||..|+..- ..|++|.+.+.+.+
T Consensus 239 ~~Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 239 LLPFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred cCCccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence 356689999999999999999999 999997543 56999999988765
No 197
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.71 E-value=5.9 Score=46.32 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHH
Q 001324 608 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLM 687 (1100)
Q Consensus 608 eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~ 687 (1100)
+++..+-.+++.++.+.++|.+++.++. ++-..+++|++.-...++-.-+++.-.... ..+..+.-..+.+|.
T Consensus 264 ~~~~~i~~~i~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m------k~K~~~~~g~l~kl~ 336 (622)
T COG5185 264 KFVHIINTDIANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAM------KQKSQEWPGKLEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHhcchHHHHHH
Confidence 4555777788888888888777765442 222233333333322222222222211111 112225556677888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 688 SQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 688 r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
..+..|++|++.+.++.+.|..|+...
T Consensus 337 ~eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 899999999999999999999888776
No 198
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.67 E-value=1.9 Score=46.35 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHH
Q 001324 810 AVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMK 863 (1100)
Q Consensus 810 ~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~ 863 (1100)
..-++++..+++.+...|+.|+.||..++..+. .+|.+.|++|..-+.++
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~lle----svqRLkdEardlrqela 181 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLE----SVQRLKDEARDLRQELA 181 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 345688888999999999999999876654432 23566666666655543
No 199
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=95.65 E-value=4.8 Score=44.85 Aligned_cols=66 Identities=12% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001324 650 QEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLI 716 (1100)
Q Consensus 650 ~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~ 716 (1100)
.+.+..+...++.++..+.. ...+++..+|.....+|-.|..++..-++.....+. +++||..+.+
T Consensus 112 ~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~aKl 178 (391)
T KOG1850|consen 112 EQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKAKL 178 (391)
T ss_pred HHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHH
Confidence 33344444444444444433 345566678888888888888888888888777776 8888888744
No 200
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0034 Score=70.86 Aligned_cols=40 Identities=35% Similarity=0.980 Sum_probs=34.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT 1090 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~ 1090 (1100)
....|.||++.....+++||||. ||..|...+ -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 34589999999999999999999 999997654 46999994
No 201
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.56 E-value=0.24 Score=49.94 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV 757 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~ 757 (1100)
....++..|..++.-.+.+++.+...+..+...+...-. ......-|.+.+..|+++++.+............++....
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~-~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~a 110 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK-RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKA 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555555555555544411 1122335566666666665543332211111122233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSE 783 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e 783 (1100)
..++++++.+..+.+.|-.....+..
T Consensus 111 e~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455555555555554444433333
No 202
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.49 E-value=11 Score=47.90 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.++-||+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999876
No 203
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.01 Score=66.17 Aligned_cols=43 Identities=30% Similarity=0.760 Sum_probs=31.3
Q ss_pred cccccccccccccc-------------ceEEeCCCCcccchhhh----hcCCCCCCCcccc
Q 001324 1049 PNSHMCKVCFESPT-------------AAILLPCRHFCLCKSCS----LACSECPICRTKI 1092 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~-------------~~vl~pC~H~~~C~~C~----~~~~~CP~Cr~~i 1092 (1100)
.+...|.||++... ..-=+||||- +--.|- .+.+.|||||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 35668999998621 1234799997 888884 3457899999984
No 204
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.29 E-value=5.3 Score=43.05 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 792 NQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 792 ~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
.-..-...+.+.+.+.++....+.+.+.+.+|++-|.-|+.
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEr 126 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLER 126 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33344556667777777777778888888888888877743
No 205
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.27 E-value=13 Score=51.05 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCccccC
Q 001324 176 TVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm~ 192 (1100)
.++-.|++|||||.+|-
T Consensus 26 ~~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 26 RLLLRGNNGAGKSKVLE 42 (1353)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 34556999999998873
No 206
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.27 E-value=0.0074 Score=53.61 Aligned_cols=36 Identities=31% Similarity=0.794 Sum_probs=27.1
Q ss_pred ccccccccc-------------cceEEeCCCCcccchhhhhc----CCCCCCCc
Q 001324 1053 MCKVCFESP-------------TAAILLPCRHFCLCKSCSLA----CSECPICR 1089 (1100)
Q Consensus 1053 ~C~iC~~~~-------------~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr 1089 (1100)
.|.||++.. ..+++++|||. |...|... ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 499998855 45677899999 99999543 35799998
No 207
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.27 E-value=0.2 Score=53.30 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
..+..++.++......|..+..++..+......+...-+....-...++|+...+..++..+++++.+|+.+|..|=+.+
T Consensus 102 ~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 102 DELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444455555667778888888999999999999999999987765
Q ss_pred HHHHH
Q 001324 835 LAARE 839 (1100)
Q Consensus 835 ~~~~~ 839 (1100)
...+.
T Consensus 182 m~~k~ 186 (194)
T PF08614_consen 182 MQRKA 186 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 208
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.16 E-value=11 Score=52.01 Aligned_cols=37 Identities=5% Similarity=0.059 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+++++...+...+..+..+++.+..+...++.+++.+
T Consensus 337 el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~ 373 (1353)
T TIGR02680 337 RARADAEALQAAAADARQAIREAESRLEEERRRLDEE 373 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443
No 209
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.15 E-value=12 Score=46.19 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc-chHH------HHHHHHHHHHHHHHHHH
Q 001324 598 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPD-GSKV------QIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 598 ~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~-~l~~------qieeLed~l~~~k~~i~ 657 (1100)
.+.++.-.++-.+..+..|+..++..++++..+-...+. +... +++.|++.+...+.++.
T Consensus 106 sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 106 SLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555555556666777777777777776222222211 1111 23556665555555554
No 210
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.13 E-value=3.2 Score=50.81 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCChHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001324 726 QEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV-------DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEE 798 (1100)
Q Consensus 726 ~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~-------~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e 798 (1100)
...+..++.-+..++..........+.+++++ ...+.++..++..++.+..+...-.. -+.| -.++.+
T Consensus 69 E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~l----peveae 143 (916)
T KOG0249|consen 69 EERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETL----PEVEAE 143 (916)
T ss_pred ccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhh----hhhHHH
Confidence 33445555555555543333332233333333 22334444455555544444311111 1112 233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 799 ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 799 ~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
....-++..++........++..||..+++++..||..+++....-
T Consensus 144 l~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 144 LAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555677777777888889999999999999999988766554433
No 211
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.99 E-value=6.3 Score=42.30 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Q 001324 638 SKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIH 717 (1100)
Q Consensus 638 l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~ 717 (1100)
++.+++++.....+....|..+|+.|.+.. .+.+.+.......+.....|.+...+|++.++.-..
T Consensus 28 l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i---------~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs----- 93 (207)
T PF05010_consen 28 LKKKYEELHKENQEMRKIMEEYEKTIAQMI---------EEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS----- 93 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH-----
Confidence 345666777777777788887777665322 133334444444444444455555555554444433
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHH
Q 001324 718 ECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHV-QLSEENSGLHVQNQKLA 796 (1100)
Q Consensus 718 e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~-~l~e~~~~L~~~~~kle 796 (1100)
+|..+..++++-+..++.. -..+...+.++..++.......+.|+.... .|..+|..+.....++.
T Consensus 94 ------dl~~ryek~K~vi~~~k~N-------EE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~ 160 (207)
T PF05010_consen 94 ------DLHKRYEKQKEVIEGYKKN-------EETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQ 160 (207)
T ss_pred ------HHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555555555431 012334444555555555555555554421 12333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001324 797 EEASYAKELASAAAVELKNLA 817 (1100)
Q Consensus 797 ~e~~~~~ee~~~l~~E~~~l~ 817 (1100)
.+...++-.+++....+..|.
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe 181 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLE 181 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 212
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.96 E-value=16 Score=46.89 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 001324 784 ENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 848 (1100)
Q Consensus 784 ~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~ 848 (1100)
....+..+....++++..++.+..-..+++..+++++.+..-++.+....+..++.....|+.++
T Consensus 623 ~~~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~ 687 (1072)
T KOG0979|consen 623 VSPVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSEL 687 (1072)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445566666667777777777777777777777777777777777777777776666666544
No 213
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.83 E-value=8.1 Score=48.05 Aligned_cols=94 Identities=28% Similarity=0.343 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccc------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEASM------ANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~~~------~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.+.-|+.+..++++.+.+|.+++.+-.+... -+-.+.-|+.--.-|..||+|-...+|.+..++++|-.-++..
T Consensus 388 A~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 3557888888888888888877766433321 1234566777777777777777777777777776665555554
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHh
Q 001324 715 LIHECSENKKLQEKVNLLEQQLAC 738 (1100)
Q Consensus 715 ~~~e~~~~~el~~~~~~Lq~el~~ 738 (1100)
..+++++.+.++...+++..
T Consensus 468 ----~~Enk~~~~~~~ekd~~l~~ 487 (861)
T PF15254_consen 468 ----KEENKRLRKMFQEKDQELLE 487 (861)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 33555555555444444443
No 214
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.81 E-value=14 Score=45.60 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 792 NQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 792 ~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
++.|.+.+..++++-..+..-++-|.-+|.-|..-.+--++|
T Consensus 244 r~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeE 285 (739)
T PF07111_consen 244 REELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEE 285 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555556666555444444444
No 215
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.79 E-value=9.8 Score=43.58 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKV 729 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~ 729 (1100)
..+..+..+..++.+....-..+..+|..|.+.|......|-..+.-+...+
T Consensus 111 kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~ 162 (309)
T PF09728_consen 111 KFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLL 162 (309)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666777777777777766554444444444444
No 216
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.013 Score=66.42 Aligned_cols=43 Identities=28% Similarity=0.740 Sum_probs=32.6
Q ss_pred ccccccccccc---ceEEeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001324 1052 HMCKVCFESPT---AAILLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1095 (1100)
Q Consensus 1052 ~~C~iC~~~~~---~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~~ 1095 (1100)
..|.||++... .+.++||.|- |-..|.... ..||+|+..|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 38999999443 4677899999 888995433 3499999987643
No 217
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=11 Score=44.04 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 762 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA---SAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 762 ~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~---~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
++++.+..+++.+-.++....+.+..|...-+++-.++. ++.+. +++...+++....+.|...+-..|+.++....
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444445555555555555443 33332 33344445555555555555555555544444
Q ss_pred Hh
Q 001324 839 ES 840 (1100)
Q Consensus 839 ~~ 840 (1100)
+.
T Consensus 424 e~ 425 (521)
T KOG1937|consen 424 EA 425 (521)
T ss_pred HH
Confidence 33
No 218
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.67 E-value=0.017 Score=51.30 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i~~ 1094 (1100)
....|+||.+-..+.|++||||. ||..|... ...||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45689999999999999999987 99999543 3569999998775
No 219
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=13 Score=44.42 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=5.2
Q ss_pred CceEEEEEEE
Q 001324 294 RSHTIFTLMI 303 (1100)
Q Consensus 294 RSH~if~i~v 303 (1100)
++|.+|.|..
T Consensus 150 LsssMnsIKT 159 (654)
T KOG4809|consen 150 LSSSMNSIKT 159 (654)
T ss_pred hcCccccccc
Confidence 4555555543
No 220
>PF13514 AAA_27: AAA domain
Probab=94.65 E-value=25 Score=47.62 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=7.6
Q ss_pred ccceEEeCCCCc
Q 001324 1061 PTAAILLPCRHF 1072 (1100)
Q Consensus 1061 ~~~~vl~pC~H~ 1072 (1100)
..-|+|+.|.+.
T Consensus 1082 ~~QVI~FTch~~ 1093 (1111)
T PF13514_consen 1082 RRQVIYFTCHEH 1093 (1111)
T ss_pred CCeEEEEeccHH
Confidence 456677677655
No 221
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=94.64 E-value=3.4 Score=46.84 Aligned_cols=107 Identities=18% Similarity=0.215 Sum_probs=64.4
Q ss_pred hcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHH----HH-----
Q 001324 631 SVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGE-ASMANASMVDMQQTVTRLMSQCNEKAFELE----IK----- 700 (1100)
Q Consensus 631 ~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~-~~~~~~~~~el~~~~~~L~r~l~ek~~Ele----~~----- 700 (1100)
+.+.+..+.=||+.|+|.|......+..+-+++-+-.+ ..........++.++..|..+|.++++-++ ++
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ 182 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDAT 182 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCC
Confidence 33333444445666666666666666555554432211 123334455777777888888888877776 11
Q ss_pred -------------------HHhHHH---------HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhcc
Q 001324 701 -------------------SADNRI---------LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNG 741 (1100)
Q Consensus 701 -------------------~ad~~~---------LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~ 741 (1100)
..+... |-.+|... +.+..+|.++|++|+.||+..+.
T Consensus 183 ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl----~~eke~L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 183 NGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKL----ADEKEELLEQVRKLKLQLEERQS 247 (302)
T ss_pred CCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 011110 56667776 67889999999999999976543
No 222
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=94.64 E-value=7.7 Score=41.69 Aligned_cols=90 Identities=28% Similarity=0.335 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHH------------HHHHHHHH
Q 001324 756 YVDELRKKVQSQETENEKLKLEH-VQLSEENSGLHVQNQKLAEEAS--YAKELASAAAVE------------LKNLAGEV 820 (1100)
Q Consensus 756 ~~~~l~~~~~~lk~elE~lk~e~-~~l~e~~~~L~~~~~kle~e~~--~~~ee~~~l~~E------------~~~l~e~v 820 (1100)
.-...+++|..++.++...+.+. ..+.+....+..-+.+|+.+.. .+-.+.+.+..+ ...+.+-.
T Consensus 79 ~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~ 158 (206)
T PF14988_consen 79 LKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFT 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777663 2244445556666666665551 122233333333 33455666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 821 TKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 821 ~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
..+-.+|.+|.++|...-.....++
T Consensus 159 ~~i~~EN~~L~k~L~~l~~e~~~L~ 183 (206)
T PF14988_consen 159 RSIKRENQQLRKELLQLIQEAQKLE 183 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888887665555444444
No 223
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.019 Score=66.97 Aligned_cols=45 Identities=29% Similarity=0.793 Sum_probs=38.4
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
.+...|.||+...-..|..||||. +|..|..++ ..||.||-.+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 566789999999999999999999 999995444 669999998765
No 224
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=8.1 Score=46.09 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
...++...|+..+--||.+..+.-.++.||-.|
T Consensus 374 ~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 374 AGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 225
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.40 E-value=3.5 Score=47.62 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAA----AVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l----~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
+...+..++.+.+.+......+.+....+...+..|..++..++...... ..++..+..++..+..+.+.++.++.
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555556666666666666666554443 23444444444444444444444433
Q ss_pred HHH
Q 001324 836 AAR 838 (1100)
Q Consensus 836 ~~~ 838 (1100)
..+
T Consensus 234 el~ 236 (325)
T PF08317_consen 234 ELQ 236 (325)
T ss_pred HHH
Confidence 333
No 226
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.39 E-value=4 Score=46.72 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=24.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND 634 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~ 634 (1100)
...++...--.+.|.+-|...+.-+.++..+....
T Consensus 62 iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~ 96 (312)
T smart00787 62 VPLLELYQFSCKELKKYISEGRDLFKEIEEETLIN 96 (312)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666666666777777777777777777666643
No 227
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.32 E-value=6.5 Score=39.49 Aligned_cols=85 Identities=22% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 761 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 761 ~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
+.+...++..++.+.+++....+..+.+.......-.++..++++...+..++..+..++..+..++..|..++...+..
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555554444444444444444445556666666666666666666666666666666666666666655
Q ss_pred HHHHh
Q 001324 841 MHSRG 845 (1100)
Q Consensus 841 ~~~~e 845 (1100)
+..++
T Consensus 96 v~eLE 100 (140)
T PF10473_consen 96 VSELE 100 (140)
T ss_pred HHHHH
Confidence 55444
No 228
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.19 E-value=0.093 Score=62.03 Aligned_cols=89 Identities=24% Similarity=0.385 Sum_probs=58.1
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCC---CCCCCchh----HHHHHHHHHhh
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQ 213 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~---~~~~Giip----r~~~~lF~~i~ 213 (1100)
.|....-|.|.-+|..- ...||+.+-.|.-.-+ -.|.|||||||||-.- -.-|-||- -...+||....
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46677778888888654 4456777666665544 4699999999999641 11122211 13456666655
Q ss_pred c-CCCceEEEEEeeeeeeccee
Q 001324 214 D-TPGREFLLRVSYLEIYNEVI 234 (1100)
Q Consensus 214 ~-~~~~~~~v~vS~~EIyne~i 234 (1100)
+ .|+..+...|||+..|.-..
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 4 46677788999999996543
No 229
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=94.10 E-value=0.038 Score=60.46 Aligned_cols=51 Identities=10% Similarity=-0.185 Sum_probs=31.8
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC--CCCCCCcccccceeec
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC--SECPICRTKISDRLFA 1098 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~--~~CP~Cr~~i~~~i~~ 1098 (1100)
+-...+|.+|-..-..+++.||+|..+|..|+... ..||.|...+...++|
T Consensus 340 ~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 340 LMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred chhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 33455677776666666667777777777775432 4577776665555554
No 230
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.99 E-value=11 Score=40.97 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 622 SNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEI 699 (1100)
Q Consensus 622 ~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~ 699 (1100)
..+.++.+.+.+--.-++..|.++++.+...+..+. ...+....|.+++.+...+.+.
T Consensus 12 a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a--------------------~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 12 ANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALA--------------------RVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433222233445566666666555555 4555555555555555555443
No 231
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.98 E-value=14 Score=45.19 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001324 721 ENKKLQEKVNLLEQQLAC 738 (1100)
Q Consensus 721 ~~~el~~~~~~Lq~el~~ 738 (1100)
...++++++..++.++..
T Consensus 276 ~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555555555555544
No 232
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.95 E-value=12 Score=41.37 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.|..++.++..++++...+++...+++..|+.++...
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555555555554444444
No 233
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.034 Score=60.13 Aligned_cols=45 Identities=29% Similarity=0.756 Sum_probs=35.1
Q ss_pred Cccccccccccccccce-EEeCCCCcccchhhhhcC------CCCCCCccccc
Q 001324 1048 DPNSHMCKVCFESPTAA-ILLPCRHFCLCKSCSLAC------SECPICRTKIS 1093 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~-vl~pC~H~~~C~~C~~~~------~~CP~Cr~~i~ 1093 (1100)
..+..+|++|-+.++.. +++||||. +|..|.... -.||.|..++.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 34667999999988776 55679998 999996543 25999998765
No 234
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.92 E-value=13 Score=41.32 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKV 729 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~ 729 (1100)
+++.++..|..++.+...+++.+..+++.++..+... ..++.++.+.+
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l----~~eI~~~~~~I 96 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL----QKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4444444455444444444444444444444444444 33444444444
No 235
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.91 E-value=0.47 Score=51.47 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
..+.-.+.+...-+.++-.|+.++..|.+..+.|...++|+..|.......+.=+..++......+.+|+.+..++..||
T Consensus 46 AaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsEL 125 (307)
T PF10481_consen 46 AALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSEL 125 (307)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555567777788888888999999999999999999999888888888888888889999999999998888
Q ss_pred HHHHHhH
Q 001324 835 LAARESM 841 (1100)
Q Consensus 835 ~~~~~~~ 841 (1100)
+.-+...
T Consensus 126 ErsQ~~~ 132 (307)
T PF10481_consen 126 ERSQQAA 132 (307)
T ss_pred HHHHHhh
Confidence 8655443
No 236
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.83 E-value=3.8 Score=50.20 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh----HHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLI----HECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~----~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
.+..++..+..++.....++...++..+.|+.++..... -.......++.++..++.++..+...
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~ 269 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLR 269 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666655543100 00112335566666677777666543
No 237
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.021 Score=70.40 Aligned_cols=40 Identities=35% Similarity=0.869 Sum_probs=33.4
Q ss_pred cccccccccccc-----eEEeCCCCcccchhhhhc----CCCCCCCcccc
Q 001324 1052 HMCKVCFESPTA-----AILLPCRHFCLCKSCSLA----CSECPICRTKI 1092 (1100)
Q Consensus 1052 ~~C~iC~~~~~~-----~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i 1092 (1100)
..|.||.+.-.. .-.+||+|. ||..|-.. ...||+||..+
T Consensus 292 ~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 292 ELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred Ceeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 479999998887 788999998 99999543 37799999943
No 238
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.69 E-value=11 Score=44.40 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 604 DLLVEQVKMLAGEIAFSSSNLKRLV 628 (1100)
Q Consensus 604 d~l~eq~k~l~~e~~~l~~el~~L~ 628 (1100)
..|.|-+..|...++..+..|.+|.
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq 337 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQ 337 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 4467777777777766666666554
No 239
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.64 E-value=0.04 Score=59.85 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=31.2
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||.-+. +..++..|. ++..+.+.--..|| .+|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~-~~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYA-AAKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHH-HHHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHH-HHHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 3599998664 455677775 44444444222344 47889999999999764
No 240
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.57 E-value=15 Score=46.93 Aligned_cols=78 Identities=23% Similarity=0.162 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
.+++.++..+..++..+..+...+...-..-...-..|.+..+.+..++..|...++.+..+..-|..+...|.+||+
T Consensus 88 ~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 88 SELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666665444443222222334555666777777788888888888888888888888888855
No 241
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.57 E-value=11 Score=44.88 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLS 782 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~ 782 (1100)
...+.|.+++..++.|+.+++++...+.
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk 186 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLK 186 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 3455667777778888888888854443
No 242
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=93.53 E-value=37 Score=45.39 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHH
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQ 681 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~ 681 (1100)
.+|.++.-.+.-..+++.+..+++ +++.++++-...+..++..+.+|..+.+ .+.++..
T Consensus 186 Ald~~kk~rkd~~~evk~~~~~l~---------------~lk~~K~~~e~~~l~i~~~~~ki~~~ke------~v~e~e~ 244 (1294)
T KOG0962|consen 186 ALDSLKKLRKDQSQEVKTKKQELE---------------HLKTLKERAEVLRLNIHSGQRKIEKSKE------EVSELEN 244 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 444444444445556666666654 5666666666666666655554443332 2235555
Q ss_pred HHHHHHHHHHHHH
Q 001324 682 TVTRLMSQCNEKA 694 (1100)
Q Consensus 682 ~~~~L~r~l~ek~ 694 (1100)
.+.+..+.+.+..
T Consensus 245 e~~~~~~~i~ei~ 257 (1294)
T KOG0962|consen 245 ELGPIEAKIEEIE 257 (1294)
T ss_pred HhhHHHHHHHHHH
Confidence 5555555544443
No 243
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.49 E-value=6.7 Score=44.89 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAA----AVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l----~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
+.+.+..++.+.+.|......+.+-...|......|..+...++.....+ ..+++.+.+++..+..++.....++.
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555556666666666666666666666665 33666666666666555555555555
Q ss_pred HHHHhHH
Q 001324 836 AARESMH 842 (1100)
Q Consensus 836 ~~~~~~~ 842 (1100)
..+.+..
T Consensus 229 e~~~~l~ 235 (312)
T smart00787 229 ELEEELQ 235 (312)
T ss_pred HHHHHHH
Confidence 4444443
No 244
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.47 E-value=9.9 Score=41.69 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHh
Q 001324 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHEC 719 (1100)
Q Consensus 640 ~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~ 719 (1100)
.|++.|+.+++.-+.+...-...+..-.+ ..-.+...-..|.+.-.-..-+|.+++..+.-|+-||..+ -
T Consensus 39 fQleSlEAaLqKQKqK~e~ek~e~s~LkR------Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~----K 108 (307)
T PF10481_consen 39 FQLESLEAALQKQKQKVEEEKNEYSALKR------ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSC----K 108 (307)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhhhhhhh------hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH----H
Confidence 46778888888777777633332222211 1113333334444444444566777888888899999888 5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC
Q 001324 720 SENKKLQEKVNLLEQQLACQNGDKS 744 (1100)
Q Consensus 720 ~~~~el~~~~~~Lq~el~~l~~~~~ 744 (1100)
..+..|...++.++.+|+..+....
T Consensus 109 kqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5777788888888888877765433
No 245
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.47 E-value=2.7 Score=41.85 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHH
Q 001324 612 MLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQM 656 (1100)
Q Consensus 612 ~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i 656 (1100)
.+..++..+.....+...+......+++.+.+.+.++-..+...+
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444443333333333
No 246
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.19 E-value=17 Score=40.61 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENG 667 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr 667 (1100)
..+.|...+......+..+...+....
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~ 114 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLN 114 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555555555555554444444333
No 247
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.17 E-value=3.8 Score=41.12 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHH
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQ 681 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~ 681 (1100)
+-|.|..++..|++++...+..+..+..+. +..+..++.|+.++......+..|+. ++..++.
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~da----En~k~eie~L~~el~~lt~el~~L~~-------------EL~~l~s 80 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDA----ENSKAEIETLEEELEELTSELNQLEL-------------ELDTLRS 80 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 455666677777777777777666444443 33344455566555555555553333 3335555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.+..|...+..+...+..++.-+..+...|..+
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555555555555444444444444
No 248
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.12 E-value=21 Score=41.33 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND 634 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~ 634 (1100)
...++...--.+.|.+-|...+..+.++..+....
T Consensus 67 ~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~ 101 (325)
T PF08317_consen 67 VPMLELYQFSCRELKKYISEGRQIFEEIEEETYES 101 (325)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34666666666777777777777777777776655
No 249
>PF13514 AAA_27: AAA domain
Probab=93.05 E-value=46 Score=45.15 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=6.2
Q ss_pred ceecceecC
Q 001324 141 AYAFDRVFG 149 (1100)
Q Consensus 141 ~f~FD~Vf~ 149 (1100)
.-.|+.+|+
T Consensus 86 r~~f~~iF~ 94 (1111)
T PF13514_consen 86 RETFEAIFS 94 (1111)
T ss_pred HHHHHHHHc
Confidence 356788885
No 250
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.97 E-value=22 Score=42.12 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRLVDQ 630 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L~~q 630 (1100)
.+..++..+..+++.++..+.+|...
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555433
No 251
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=92.93 E-value=27 Score=42.12 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 794 KLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 794 kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
....++..+-.++.+..-+.+.+...+..+..+...|..+....-+.+.-.|
T Consensus 451 ~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE 502 (570)
T COG4477 451 TAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAVLAE 502 (570)
T ss_pred hhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555566666666666666666666554444444333
No 252
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.85 E-value=6.8 Score=50.64 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh------------hHHhHHHHHHHHHHHHHHHHHHhhcc
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKL------------IHECSENKKLQEKVNLLEQQLACQNG 741 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~------------~~e~~~~~el~~~~~~Lq~el~~l~~ 741 (1100)
+++..|..++.....++...++..+.++.++.... ........+|+.++..++.++..+..
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~ 309 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLST 309 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666555555555555666665554320 00013456666666666666666554
No 253
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.012 Score=65.68 Aligned_cols=44 Identities=27% Similarity=0.757 Sum_probs=33.7
Q ss_pred cccccccccccceE-EeCCCCcccchhhhhcC-----CCCCCCccccccee
Q 001324 1052 HMCKVCFESPTAAI-LLPCRHFCLCKSCSLAC-----SECPICRTKISDRL 1096 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~v-l~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~~i 1096 (1100)
..|.||++--+.++ ..-|.|. ||..|.+.. ..||.||+...+..
T Consensus 44 v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 37999999655554 4579999 999996543 66999999876543
No 254
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=92.80 E-value=25 Score=41.47 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=36.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001324 598 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGE 668 (1100)
Q Consensus 598 ~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~ 668 (1100)
.....+..+.+.+..+......+..++++|..+ ++..+.-+...+++.+-....||-++.+..+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~-------~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQ-------YQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666555544 3445555666666666666656665554443
No 255
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.77 E-value=13 Score=41.89 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 792 NQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 792 ~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
.++||.=+..+++++..+..+++.+..+....+.+++.|..|
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333
No 256
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.74 E-value=0.071 Score=59.44 Aligned_cols=46 Identities=17% Similarity=0.447 Sum_probs=36.8
Q ss_pred Cccccccccccccc----cceEEeCCCCcccchhhhhcCC---CCCCCcccccc
Q 001324 1048 DPNSHMCKVCFESP----TAAILLPCRHFCLCKSCSLACS---ECPICRTKISD 1094 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~----~~~vl~pC~H~~~C~~C~~~~~---~CP~Cr~~i~~ 1094 (1100)
......|+|+.... ..++|.||||. ||..|...+. .||+|..++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCcccc
Confidence 34567899987643 56888899998 9999977765 69999999764
No 257
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.68 E-value=18 Score=41.43 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLE 777 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e 777 (1100)
...+.+++-++.||-.|+.+
T Consensus 515 RVKEsEiQYLKqEissLkDE 534 (593)
T KOG4807|consen 515 RVKESEIQYLKQEISSLKDE 534 (593)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 258
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.67 E-value=12 Score=42.57 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 793 QKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 793 ~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
..|..-....++.|+.|..|++.|.+++..++-++.-|++-++
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 3444555556666666666666666666666666666655444
No 259
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=92.65 E-value=13 Score=44.55 Aligned_cols=131 Identities=20% Similarity=0.234 Sum_probs=81.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHH
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 679 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el 679 (1100)
...+|.|+|...+++.-++.+...++||.+.+..---++..+.+.|...|...+.....-+++..+....-. .++
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q-----~e~ 410 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQ-----NEM 410 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 457889999999999999999999999999888777777778888888888877766644443332221111 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHh
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLAC 738 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~ 738 (1100)
...+.++..+++..--+++.+.....-++.+++...+. +.+.....|..++++|..
T Consensus 411 ~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdt---E~k~R~~eV~~vRqELa~ 466 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDT---EGKAREREVGAVRQELAT 466 (531)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccH---HHHHHHHHHHHHHHHHHH
Confidence 33334444444433444445555555566666666442 223333445555555544
No 260
>PRK06893 DNA replication initiation factor; Validated
Probab=92.57 E-value=0.1 Score=57.09 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=33.4
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 138 ~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
....++||..++.. +..-+ ..+...+-.++|..++-||++|+||||.+.
T Consensus 9 ~~~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 9 QIDDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCCcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 34568999988644 32222 222333345788889999999999999885
No 261
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.50 E-value=6.6 Score=46.51 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRL 627 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L 627 (1100)
-..|-|.+++|.++.||..++++..-|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~ll 185 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLL 185 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 456788999999999999999877633
No 262
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.50 E-value=17 Score=38.90 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 642 IQNLEREIQEKRRQMR 657 (1100)
Q Consensus 642 ieeLed~l~~~k~~i~ 657 (1100)
|+.|++++.+.+....
T Consensus 29 IksLKeei~emkk~e~ 44 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEE 44 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555544
No 263
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.49 E-value=0.03 Score=67.74 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=35.1
Q ss_pred cccccccccccceEE---eCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001324 1052 HMCKVCFESPTAAIL---LPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1098 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl---~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i~~ 1098 (1100)
..|.+|+....+-.+ .+|+|. ||..|...+ ..||+||..|..+++.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 478898875555443 499999 999995443 5699999999887754
No 264
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.45 E-value=0.98 Score=55.86 Aligned_cols=50 Identities=34% Similarity=0.481 Sum_probs=34.3
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||..+- ...+..+|. .+..+++..-.+||. ||-||.+|+||||-+.
T Consensus 283 ~~~TFDnFvv-G~sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVI-GASNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcC-CCccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 4589987553 234455553 455555544456776 8999999999999986
No 265
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.38 E-value=16 Score=38.31 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.+..|.+++.-.+++++.-+-....++++|..+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555555555555555
No 266
>PRK06620 hypothetical protein; Validated
Probab=92.31 E-value=0.088 Score=56.94 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=33.9
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc---eeEEeeccCCCCCccccC
Q 001324 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN---GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 138 ~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n---~ti~aYGqtgSGKT~Tm~ 192 (1100)
....|+||..+. ..++...|..+.. +.+. -|+| -.++-||++|+||||.+.
T Consensus 9 ~~~~~tfd~Fvv-g~~N~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 9 TSSKYHPDEFIV-SSSNDQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCCchhhEe-cccHHHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 345689998664 4455667764332 3321 1444 358999999999999986
No 267
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.26 E-value=17 Score=38.12 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=80.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVND-----PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANAS 675 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~-----~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~ 675 (1100)
++++.++-..-.+.-.++.+...+... ++++++ .+.+++....|.+.|+++...+..|-..+......
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~k-e~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~------ 78 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQK-EELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI------ 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 455656655556666666666555422 244444 55667777788888888888887666554433222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChH
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDE 755 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~ 755 (1100)
++-.......+...+.....+|......+..+..+|..+ ..+...++.....|+.+...+. .+.+=.
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~----k~~r~k~~~~~~~l~~~~~~~~---------~P~ll~ 145 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV----KKERDKLRKQNKKLRQQGGLLG---------VPALLR 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCC---------CcHHHH
Confidence 222333333333333333344444444444444444444 3344445555544444432221 122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 756 YVDELRKKVQSQETENEKLKLEHVQ 780 (1100)
Q Consensus 756 ~~~~l~~~~~~lk~elE~lk~e~~~ 780 (1100)
........+..++.++..|+..+..
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666665533
No 268
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.10 E-value=2 Score=46.06 Aligned_cols=75 Identities=8% Similarity=0.118 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
...+..+++++..+++++.++..+. ......+.++....+....++..++..|.+++..+++++..|+.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTW----------NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544432 222223333333333334444444444444444444444444444
Q ss_pred HHHHH
Q 001324 834 LLAAR 838 (1100)
Q Consensus 834 L~~~~ 838 (1100)
+...+
T Consensus 162 ~~~~~ 166 (206)
T PRK10884 162 LDDKQ 166 (206)
T ss_pred HHHHH
Confidence 44333
No 269
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.95 E-value=20 Score=38.48 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Q 001324 896 KLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRRE 934 (1100)
Q Consensus 896 k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~ 934 (1100)
+..+-...-++.+|+..|+.|.+.-+||.+-.+||-.++
T Consensus 167 qa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 167 QASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455688899999999998899988888887654
No 270
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.94 E-value=25 Score=39.43 Aligned_cols=168 Identities=12% Similarity=0.088 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh-HH--hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC-
Q 001324 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLI-HE--CSENKKLQEKVNLLEQQLACQNGDKSAGSSGQ- 750 (1100)
Q Consensus 675 ~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~-~e--~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~- 750 (1100)
.+..|.+.-..|..+|.....--+++++++.....+|..|.- ++ ....+++.-..+.-.++.-.++.......+..
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 344566666666666644445556888899999999988822 11 11123333333444455555555433222111
Q ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 751 ---GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEE-------NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEV 820 (1100)
Q Consensus 751 ---~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~-------~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v 820 (1100)
.-+..++-.++.+...++.++-..+..+.+.+=. -.+-+-+.+.++.-...-.+-..+....-+.+.+++
T Consensus 144 d~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL 223 (305)
T PF14915_consen 144 DNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERL 223 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1223444455555555666554444332111110 001111111122212222334455666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 001324 821 TKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 821 ~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
..|+.+|--|+..|........
T Consensus 224 ~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 224 SQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666665554443
No 271
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.93 E-value=0.26 Score=58.69 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.2
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 162 ~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
....+.+++..-+|-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34456778889999999999999999999973
No 272
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.067 Score=61.18 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=36.3
Q ss_pred cccccccccccccceE-----E---eCCCCcccchhhhhcC-----------CCCCCCcccccceee
Q 001324 1050 NSHMCKVCFESPTAAI-----L---LPCRHFCLCKSCSLAC-----------SECPICRTKISDRLF 1097 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~v-----l---~pC~H~~~C~~C~~~~-----------~~CP~Cr~~i~~~i~ 1097 (1100)
....|.||++.-...+ | -+|-|. ||..|.... +.||+||.+...+++
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 3458999999776666 4 679998 999995332 559999998876654
No 273
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.82 E-value=24 Score=41.81 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 001324 928 EESKRREEALENDLANMWVLVAKLKKEVG 956 (1100)
Q Consensus 928 eEl~~~~~~L~~el~~~~~lv~kL~ke~~ 956 (1100)
.+...+...++.++..+...++.++..+.
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444455444444455555443
No 274
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.79 E-value=0.057 Score=67.46 Aligned_cols=40 Identities=28% Similarity=0.859 Sum_probs=34.0
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC------CCCCCCccccc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC------SECPICRTKIS 1093 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~------~~CP~Cr~~i~ 1093 (1100)
..|.+|.+ ...+++++|+|. +|..|.... ..||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 47999999 899999999999 999996433 46999998764
No 275
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.76 E-value=2.6 Score=49.15 Aligned_cols=129 Identities=11% Similarity=0.152 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHH
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQ 680 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~ 680 (1100)
-++|..+...+.+.......+..|++|..++....+++...=+.+...+...-......-.++. ..+....+++
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls------~~~~~y~~~s 293 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELS------EVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHh
Confidence 4666666666677777777778888888888887777777555444444444444432222222 2222333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 681 QTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 681 ~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
.-+.++.+.|++..+||+....++++-...+.+ ..-..+.+..+.+|+++|..+-
T Consensus 294 ~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD-----~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 294 EGVSERTRELAEISEELEQVKQEMEERGSSMTD-----GSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555444444332222222 2233444555556666665543
No 276
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.70 E-value=2.5 Score=45.39 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 807 SAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 807 ~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
..+...+......+..|..+|++|.++|...+.....++
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444333
No 277
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.053 Score=62.68 Aligned_cols=41 Identities=29% Similarity=0.855 Sum_probs=31.5
Q ss_pred cccccccc-----------------cccceEEeCCCCcccchhhhhc-C---C-CCCCCccccc
Q 001324 1052 HMCKVCFE-----------------SPTAAILLPCRHFCLCKSCSLA-C---S-ECPICRTKIS 1093 (1100)
Q Consensus 1052 ~~C~iC~~-----------------~~~~~vl~pC~H~~~C~~C~~~-~---~-~CP~Cr~~i~ 1093 (1100)
..|+||+. ..++.|+.||.|. |-..|-.. | + .||+||.++.
T Consensus 572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCC
Confidence 46999997 2345778899998 99999543 2 2 6999999875
No 278
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.43 E-value=46 Score=41.48 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=33.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHH---HHHHHHHHHHHHHHHHH
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV---QIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~---qieeLed~l~~~k~~i~ 657 (1100)
.+.+..|+.++..|..++....++..-|..-+.+-..++.. ..+.|..++..-.....
T Consensus 330 ~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~ 390 (739)
T PF07111_consen 330 RDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARR 390 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45666777777777777777777666666555444333333 23345555555544444
No 279
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.31 E-value=1.8 Score=42.38 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=64.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccch
Q 001324 597 GMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASM 676 (1100)
Q Consensus 597 ~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~ 676 (1100)
+....-++.|.-+++-+++|+..++.++.+|..+-....+++=..+. ..+++......+. .++..+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~-~~e~~~~~~~~~~-------------~L~~el 77 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLME-ENEELRALKKEVE-------------ELEQEL 77 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------------HHHHHH
Confidence 33455678888899999999999999998776555433333222111 1122222222222 333345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001324 677 VDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQL 711 (1100)
Q Consensus 677 ~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL 711 (1100)
.+++....-+..-+-||.++.+.+.+|+.++.+-.
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 58888888888888899999998888888765443
No 280
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.28 E-value=1.4 Score=46.90 Aligned_cols=56 Identities=30% Similarity=0.492 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 639 KVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 639 ~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
..++++++..+......+. ++...+..|..++.+++++++.+...+..++..+...
T Consensus 101 ~~~l~~l~~~~~~~~~~l~--------------------~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLA--------------------ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL 156 (194)
T ss_dssp -------------HHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555 6666667777777777777777776666666666555
No 281
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.10 E-value=16 Score=45.49 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 001324 679 MQQTVTRLMSQCNEKAFELEIKSADNRI-----LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS 753 (1100)
Q Consensus 679 l~~~~~~L~r~l~ek~~Ele~~~ad~~~-----LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~ 753 (1100)
+-.+++.+...+.+-..|.+.+..++.. ...-++.+ ....++|...+...+.++.++-...........-+
T Consensus 19 ~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a----~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~ 94 (660)
T KOG4302|consen 19 LLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEA----SESKARLLQEIAVIEAELNDLCSALGEPSIIGEIS 94 (660)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc
Confidence 3334455555555555555544444332 33333444 55566666666777777776665433332222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLA-GEVTKLSLQNAKLEK 832 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~-e~v~kL~~qn~~L~~ 832 (1100)
...-.-+...+..+...+|.++....+-..+--.+..+-+++..++.--.++...+.....++. ++++.+..+...|++
T Consensus 95 ~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ 174 (660)
T KOG4302|consen 95 DKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQK 174 (660)
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 1111144444455555555555543333333333555556666665555444444544455555 677777777777777
Q ss_pred HHHHHHHhHHHHh
Q 001324 833 ELLAARESMHSRG 845 (1100)
Q Consensus 833 EL~~~~~~~~~~e 845 (1100)
|...-...+..+.
T Consensus 175 ek~~Rlekv~~~~ 187 (660)
T KOG4302|consen 175 EKSDRLEKVLELK 187 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 7554444444444
No 282
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.07 E-value=5.8 Score=41.52 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001324 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADN 704 (1100)
Q Consensus 675 ~~~el~~~~~~L~r~l~ek~~Ele~~~ad~ 704 (1100)
+...++.....|..++.|+..||-++....
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKI 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666655544433
No 283
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.04 E-value=13 Score=40.05 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+.+.-+.+-.|-..+......+..+...|.....+|..++.+|..|
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555556666666666677777776655
No 284
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.00 E-value=2.9 Score=37.07 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 001324 791 QNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 848 (1100)
Q Consensus 791 ~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~ 848 (1100)
...+|+..+..+-+-...|..|++.|.++...|..+|..|..|....+.....|...|
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666667777777777777777777777777777777777776544
No 285
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.93 E-value=0.13 Score=57.11 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=28.5
Q ss_pred hhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 161 AARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 161 ~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
-..|+|..+.+--+|.|+..|+||||||.||-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 35678888999999999999999999999984
No 286
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=36 Score=39.41 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 476 VKMQSRLEEEEEAKAALMSRIQRLTK 501 (1100)
Q Consensus 476 ~klq~~lee~ee~~~al~~ri~~L~k 501 (1100)
.-|...+.+..........+|+.|.|
T Consensus 158 ~pmekeI~elk~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 158 TPMEKEINELKKKLAKAEQRIDELSK 183 (542)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34455555555556666667777664
No 287
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.92 E-value=12 Score=40.47 Aligned_cols=57 Identities=26% Similarity=0.282 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 901 ARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 901 a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
+..-|++.|+.+|.--..-.+|+....++|-.-+.+|-.+..+|+..|--|+.++..
T Consensus 233 ~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lke 289 (330)
T KOG2991|consen 233 ASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKE 289 (330)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344568889999988888888999999999999999999999999988888777654
No 288
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=90.75 E-value=18 Score=38.07 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc--ccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEA--SMA-NASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIH 717 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~--~~~-~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~ 717 (1100)
-|..|+..+.+++.....|++++...... ... .....+-..-+..+..+|.|...-.+.+.+-|.-|.+||+++
T Consensus 17 Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~--- 93 (182)
T PF15035_consen 17 LVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQA--- 93 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---
Confidence 37789999999999999999999544211 000 111112223344466666666666777778888899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhc
Q 001324 718 ECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 718 e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
...+..|.+.+.+|..++..+.
T Consensus 94 -~~~N~~L~~dl~klt~~~~~l~ 115 (182)
T PF15035_consen 94 -RKANEALQEDLQKLTQDWERLR 115 (182)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999998888887777655
No 289
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.71 E-value=32 Score=42.69 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCccchhhHHHHHHHHHHHH-------HHHHHHHHHHHHhhhh
Q 001324 595 IGGMTSDQMDLLVEQVKMLAG-------EIAFSSSNLKRLVDQS 631 (1100)
Q Consensus 595 ~~~~~~~~~d~l~eq~k~l~~-------e~~~l~~el~~L~~q~ 631 (1100)
-|-+..+-+++|++++|.+.. .+...+.++-.|.+++
T Consensus 610 LG~tN~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~ 653 (1104)
T COG4913 610 LGSTNDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQA 653 (1104)
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355677789999999984443 4444455555555544
No 290
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.69 E-value=0.12 Score=58.36 Aligned_cols=41 Identities=37% Similarity=0.949 Sum_probs=33.5
Q ss_pred cccccccccccceEEeCC--CCcccchhhh-hcCCCCCCCcccccc
Q 001324 1052 HMCKVCFESPTAAILLPC--RHFCLCKSCS-LACSECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC--~H~~~C~~C~-~~~~~CP~Cr~~i~~ 1094 (1100)
..|+||++.-...++ -| ||+ .|..|. .....||.||.+|+.
T Consensus 49 leCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 379999888777776 46 899 899998 445779999999984
No 291
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.089 Score=60.06 Aligned_cols=29 Identities=41% Similarity=0.935 Sum_probs=24.4
Q ss_pred ccccccccccccc---eEEeCCCCcccchhhhh
Q 001324 1051 SHMCKVCFESPTA---AILLPCRHFCLCKSCSL 1080 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~---~vl~pC~H~~~C~~C~~ 1080 (1100)
-..|.||++.... ++++||+|+ ||..|..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~k 215 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLK 215 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHH
Confidence 3579999996655 899999998 9999954
No 292
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.37 E-value=41 Score=39.09 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCCCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001324 723 KKLQEKVNLLEQQLACQNGDKSAGSSGQGTS----------DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQN 792 (1100)
Q Consensus 723 ~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~----------~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~ 792 (1100)
..|=+++.+|+++-.-|+.+.|+......-. .+.......-++.++.|+|.||......+.+ -.++-
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~---~~ek~ 280 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKS---YQEKL 280 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3455556888888888887777665443211 2344455666777899999998886333222 23333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001324 793 QKLAEEASYAKELASAAA 810 (1100)
Q Consensus 793 ~kle~e~~~~~ee~~~l~ 810 (1100)
..|..|.....+++.+++
T Consensus 281 ~qy~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 281 MQYRAEEVDHREENERLQ 298 (552)
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 344444444445554444
No 293
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.33 E-value=43 Score=42.93 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHh
Q 001324 695 FELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLAC 738 (1100)
Q Consensus 695 ~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~ 738 (1100)
++....++++..|+.+|+.. -+++.-|+=++.-++.+|+-
T Consensus 127 ~~~~~~e~~~~~l~~~l~~~----eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 127 EEKSQAEAEIEDLMARLEST----EKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777766 55666666666555555544
No 294
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=90.32 E-value=0.15 Score=46.18 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=23.6
Q ss_pred ceEEeCCCCcccchhhhhc-------CCCCCCCccccc
Q 001324 1063 AAILLPCRHFCLCKSCSLA-------CSECPICRTKIS 1093 (1100)
Q Consensus 1063 ~~vl~pC~H~~~C~~C~~~-------~~~CP~Cr~~i~ 1093 (1100)
.+|++.|+|. |-..|... -..||+||+++.
T Consensus 46 plv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4688999998 99999432 366999999864
No 295
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.20 E-value=41 Score=39.31 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 795 LAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 795 le~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
+...+.++.+++.++....-.|.--..||..+..++.++|+..+....
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555554443
No 296
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.18 E-value=29 Score=37.17 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLE 733 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq 733 (1100)
.|..++.++..+.....-++....+++..|-+-|..+ ..+..+|+..+...+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a----~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKA----EEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444444555555555555555566666666666666 445555555554433
No 297
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.18 E-value=31 Score=37.49 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 819 EVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 819 ~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
.|...+...--|.++|...+..+..+
T Consensus 272 dVEgmqsTiliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 272 DVEGMQSTILILQQKLKETRKEIQRL 297 (330)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555544444443
No 298
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.16 E-value=12 Score=47.67 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=18.9
Q ss_pred CCCCEEEEEEeCCCChhhhhcCC-----eEEEeeCC
Q 001324 98 SGDSISVTIRFRPLSEREFQRGD-----EIAWYADG 128 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~-----~~~~~~~~ 128 (1100)
.+|...+.||.-|+...=...+. .+.|++.+
T Consensus 123 ~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 123 EDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred cCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 34667888888887654433222 45687664
No 299
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.14 E-value=8.2 Score=49.89 Aligned_cols=17 Identities=35% Similarity=0.223 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHHHHHhh
Q 001324 345 YINKSLLTLGTVIGKLS 361 (1100)
Q Consensus 345 ~IN~SL~~L~~vI~~L~ 361 (1100)
.|=+|=..+.+||..|.
T Consensus 79 eiL~Sr~v~~~VV~~L~ 95 (754)
T TIGR01005 79 EILSSNEILKQVVDKLG 95 (754)
T ss_pred HHHccHHHHHHHHHHcC
Confidence 34467777888887774
No 300
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=5.2 Score=47.79 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
.+..+++.+.+....|...|.++..+...-.+-+..+..+=++|+.|.-.-+++..+|..|++.+.....++...+..|.
T Consensus 463 sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~ 542 (852)
T KOG4787|consen 463 SLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLA 542 (852)
T ss_pred HHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHH
Confidence 34455556666666677777666665544455455667777899999999999999999999999999999988888775
Q ss_pred HH
Q 001324 832 KE 833 (1100)
Q Consensus 832 ~E 833 (1100)
.-
T Consensus 543 ~~ 544 (852)
T KOG4787|consen 543 AV 544 (852)
T ss_pred HH
Confidence 53
No 301
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.05 E-value=21 Score=45.70 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 001324 601 DQMDLLVEQVKMLAGE 616 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e 616 (1100)
.-+..|.+..+.|..+
T Consensus 536 E~l~lL~~a~~vlree 551 (717)
T PF10168_consen 536 ECLELLSQATKVLREE 551 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555655554
No 302
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.95 E-value=57 Score=40.17 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHV-QNQKLAEEASYA---KELASAAAVELKNLAGEVTKLSLQNAK 829 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~-~~~kle~e~~~~---~ee~~~l~~E~~~l~e~v~kL~~qn~~ 829 (1100)
...++.+.......+.++.+++.....+...++.+.. ++.....+...- .=+...+..|.+.+.+++..|..|...
T Consensus 220 ~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~ 299 (511)
T PF09787_consen 220 QEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQ 299 (511)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666677777777443223333333322 222111100000 011334555555555555555555555
Q ss_pred HHHHHH
Q 001324 830 LEKELL 835 (1100)
Q Consensus 830 L~~EL~ 835 (1100)
|..|+.
T Consensus 300 l~~e~~ 305 (511)
T PF09787_consen 300 LRAELQ 305 (511)
T ss_pred HHHHHH
Confidence 544443
No 303
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.81 E-value=40 Score=38.19 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001324 604 DLLVEQVKMLAGEIAFSSSNL 624 (1100)
Q Consensus 604 d~l~eq~k~l~~e~~~l~~el 624 (1100)
+.+.-.+..|..++..++.++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El 43 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKREL 43 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 444444445555555555444
No 304
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=89.79 E-value=40 Score=38.11 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=69.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 001324 695 FELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKL 774 (1100)
Q Consensus 695 ~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~l 774 (1100)
.-|+++++.-..+|+.....+ ...+++-++-++.|+.+-+.-- +.. .+-.+-...++++-..++.+||--
T Consensus 89 ~iL~~mM~qcKnmQe~~~s~L---aAaE~khrKli~dLE~dRe~ha----qda---aeGDDlt~~LEKEReqL~QQiEFe 158 (561)
T KOG1103|consen 89 DILDKMMAQCKNMQENAASLL---AAAEKKHRKLIKDLEADREAHA----QDA---AEGDDLTAHLEKEREQLQQQIEFE 158 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh----hhh---hccchHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665543331 2233444444555554322111 011 122233444555555555555443
Q ss_pred HHHHHHhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHH
Q 001324 775 KLEHVQLS----EENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA-------KLEKELLAARESMHS 843 (1100)
Q Consensus 775 k~e~~~l~----e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~-------~L~~EL~~~~~~~~~ 843 (1100)
+.++.... .-..+|.+.+.+++.=+.++--+-+++.........+...++.+++ .+++|+..+++.--+
T Consensus 159 ~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglq 238 (561)
T KOG1103|consen 159 IEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQ 238 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccc
Confidence 33321111 1123456666677776777766666666665555555555555443 245566666654444
Q ss_pred Hhhhh
Q 001324 844 RGAAM 848 (1100)
Q Consensus 844 ~e~q~ 848 (1100)
.|+|+
T Consensus 239 teaqv 243 (561)
T KOG1103|consen 239 TEAQV 243 (561)
T ss_pred hHHHH
Confidence 44444
No 305
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=89.61 E-value=21 Score=43.45 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=55.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhcccccccc
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQM----RILEQRIIENGEASMANAS 675 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i----~~Le~ri~~sr~~~~~~~~ 675 (1100)
-.+++++.|.+.-|++.-.-|+-+..=|++|.....++++- |+-=|..++.++ .+|.+++. +
T Consensus 103 ~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrD----LE~cie~kr~kLnatEEmLQqell----------s 168 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRD----LETCIEEKRNKLNATEEMLQQELL----------S 168 (861)
T ss_pred CCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHH----HHHHHHHHHhhhchHHHHHHHHHH----------h
Confidence 35777777877777776666666666677776655554433 333333333222 22333332 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
...|..|+-.|...+.+....+-.++.+-++-+..+..+
T Consensus 169 rtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~s 207 (861)
T KOG1899|consen 169 RTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLS 207 (861)
T ss_pred hhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhH
Confidence 135666666666666666655555555555555444444
No 306
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.59 E-value=3.2 Score=47.63 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 001324 637 GSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 637 ~l~~qieeLed~l~~~k~~i~ 657 (1100)
.++.+++.++.+.+.+...+.
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~ 33 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLK 33 (314)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555544444
No 307
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.55 E-value=9.3 Score=40.38 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 790 VQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 790 ~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
...+....+...+++..+.+..+..++..++.++..+...+..++...+....
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQ 175 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555555554444444444444444444433333
No 308
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.25 E-value=0.14 Score=59.08 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 156 EVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 156 ~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
.++. .+...|+.+-.+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~-~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILE-KCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHH-HHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3443 4566777776555 5699999999999998764
No 309
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.24 E-value=34 Score=36.50 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 824 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~ 824 (1100)
..+..++.-++++|...+...... -..+..-.+...+|..---.+-++|....-.+=.+...|+
T Consensus 134 ~~l~~e~erL~aeL~~er~~~e~q---~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE 197 (202)
T PF06818_consen 134 GSLRREVERLRAELQRERQRREEQ---RSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALE 197 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444443221 2223344444444444444444444444444433333333
No 310
>PRK12377 putative replication protein; Provisional
Probab=89.01 E-value=0.3 Score=54.02 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=35.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
.+||........+..++. .+..++..+..+. ..|+-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 468775544555666665 5666777776654 4688899999999999863
No 311
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.98 E-value=62 Score=39.18 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 814 KNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 814 ~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
..|.+.++.|...|.+|..|..++-
T Consensus 168 ~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 168 HTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544333
No 312
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.95 E-value=0.25 Score=59.70 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.6
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||.-.. +..+...|. .+..+.+.--..|| .+|-||++|+||||.+.
T Consensus 117 ~~~tfd~fv~-g~~n~~a~~-~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCccccccc-CCCcHHHHH-HHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 4588987432 235555665 34444443222344 47889999999999985
No 313
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.88 E-value=30 Score=41.64 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 640 VQIQNLEREIQEKRRQMRILEQRI 663 (1100)
Q Consensus 640 ~qieeLed~l~~~k~~i~~Le~ri 663 (1100)
.++.+|+.++...+.+...+..+.
T Consensus 215 ~~l~~l~~~l~~~~~~~~~~~~~~ 238 (444)
T TIGR03017 215 ARLNELSAQLVAAQAQVMDASSKE 238 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444433
No 314
>PRK06526 transposase; Provisional
Probab=88.69 E-value=0.21 Score=55.55 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=29.3
Q ss_pred cceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 144 FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
||.-|.+.-+...+..-....+++ .|.| |+.||++|+||||.+.+
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 444455555555555544444443 3444 78999999999999864
No 315
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.66 E-value=0.37 Score=52.93 Aligned_cols=49 Identities=10% Similarity=0.364 Sum_probs=31.6
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 138 ~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
....|+||.-+. . .+..++..+.. ++. ......++-||++|+||||.+.
T Consensus 15 ~~~~~~fd~f~~-~-~n~~a~~~l~~-~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 15 LPDDETFASFYP-G-DNDSLLAALQN-ALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCcCCcccccc-C-ccHHHHHHHHH-HHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 345688987654 3 55666653322 221 2223478999999999999985
No 316
>PRK08116 hypothetical protein; Validated
Probab=88.65 E-value=0.27 Score=55.15 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=35.8
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhc--CCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAME--GVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~--G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++||.-. .+..+...|. .+...++.+.. +.|..++-||++|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 357888644 3455555665 56667776654 345569999999999999875
No 317
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=88.55 E-value=61 Score=40.96 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=26.8
Q ss_pred eEEEecCCCCCcccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCc
Q 001324 320 LNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHG 387 (1100)
Q Consensus 320 L~lVDLAGsE~~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns 387 (1100)
|+|||.+|..-.. ++. +. -..-++.+++.+++.. .|| .++-++-.+.||.+
T Consensus 246 VtLVDTpGA~pG~-~AE-----e~----Gq~~aIArnl~amasl---~VP----~ISVViGeggSGGA 296 (762)
T PLN03229 246 VTFIDTPGAYADL-KSE-----EL----GQGEAIAHNLRTMFGL---KVP----IVSIVIGEGGSGGA 296 (762)
T ss_pred EEEEECCCcCCCc-hhH-----HH----hHHHHHHHHHHHHhCC---CCC----EEEEEeCCcchHHH
Confidence 7899999975311 111 10 0123455566666543 244 45666666665543
No 318
>PRK05642 DNA replication initiation factor; Validated
Probab=88.53 E-value=0.38 Score=52.82 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCcceecceecCCCCChhHHHhhhhHHHHHHHhc---CC-ceeEEeeccCCCCCccccC
Q 001324 138 PATAYAFDRVFGPHANSQEVYDVAARPVVKAAME---GV-NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 138 ~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~---G~-n~ti~aYGqtgSGKT~Tm~ 192 (1100)
....|+||.-+.. . +... ...+....+ ++ +..++-||++|+||||-+.
T Consensus 12 ~~~~~tfdnF~~~-~-~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 12 LRDDATFANYYPG-A-NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCCcccccccCcC-C-hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 3456899987732 2 2333 333433332 22 2468899999999999875
No 319
>PRK10869 recombination and repair protein; Provisional
Probab=88.53 E-value=75 Score=39.59 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=31.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 781 LSEENSGLHVQNQKLAEEASYAKELASAAAVEL---KNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 781 l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~---~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
+.+--..+...++||-.....+-+...++..++ ++..+.+..|+.+...+.+++...-..+.
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466666666643333333333333333 44445566666666666665554444443
No 320
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.50 E-value=4.9 Score=46.14 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLE 777 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e 777 (1100)
+.++.++.....+++.|+.-
T Consensus 116 ~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555555554
No 321
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.41 E-value=74 Score=39.39 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=8.6
Q ss_pred hhhhhHHhhhhccccccc
Q 001324 857 KYSDGMKAGRKGRLSGRS 874 (1100)
Q Consensus 857 ~~l~~~~~~~~e~l~~~~ 874 (1100)
..|..++.+-++++...+
T Consensus 938 ~~lkrm~~~~k~ema~iE 955 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEEMASIE 955 (1187)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 344445555555555433
No 322
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.41 E-value=23 Score=39.35 Aligned_cols=13 Identities=46% Similarity=0.557 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 001324 901 ARKQREAALEAAL 913 (1100)
Q Consensus 901 a~~~r~~aLE~el 913 (1100)
++.+|+..|...+
T Consensus 128 eR~~Rl~~L~~~l 140 (251)
T PF11932_consen 128 ERQERLARLRAML 140 (251)
T ss_pred HHHHHHHHHHHhh
Confidence 4555556665444
No 323
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.36 E-value=9.3 Score=42.28 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 795 LAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKL 830 (1100)
Q Consensus 795 le~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L 830 (1100)
|+.++..+..++.++..+.+....+...|+.+....
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444443333333
No 324
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=88.29 E-value=45 Score=36.73 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 001324 893 DDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEV 955 (1100)
Q Consensus 893 ~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~ 955 (1100)
-.+..+...+......|+.++..-..+.+-++.+.+.+..++..++..+..++.++...+..-
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~e 215 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQE 215 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888777777777889999999999999999999999888876654
No 325
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=88.28 E-value=46 Score=36.91 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 797 EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 797 ~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
.+...++.+......+.+.+.+++..|.++..+|..
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 326
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.23 E-value=55 Score=37.68 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhccccccc
Q 001324 804 ELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRS 874 (1100)
Q Consensus 804 ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~ 874 (1100)
+++..+.-|++-|.+.+..--.+|+.|..-|+..+....++.. -+.+.-.+.+.+.+.+-+++..++
T Consensus 421 eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQr----EnQELnaHNQELnnRLaaEItrLR 487 (593)
T KOG4807|consen 421 EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQR----ENQELNAHNQELNNRLAAEITRLR 487 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555667777777777777888888777777766655542 222333445556666666666665
No 327
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.09 E-value=0.35 Score=56.81 Aligned_cols=51 Identities=29% Similarity=0.502 Sum_probs=31.9
Q ss_pred CcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 139 ATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 139 ~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
...|+||.-. .+.++.-.|. ++.. |...-.+.---||-||++|+||||-|.
T Consensus 81 ~~~ytFdnFv-~g~~N~~A~a-a~~~-va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFV-VGPSNRLAYA-AAKA-VAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhhee-eCCchHHHHH-HHHH-HHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 3469999854 4555555554 2222 222222233458899999999999985
No 328
>PRK10698 phage shock protein PspA; Provisional
Probab=88.07 E-value=44 Score=36.41 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhcCCcc-chHHHHHHHHHHHHHHHHHHH
Q 001324 617 IAFSSSNLKRLVDQSVNDPD-GSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 617 ~~~l~~el~~L~~q~~~~~~-~l~~qieeLed~l~~~k~~i~ 657 (1100)
....+..+.++.+... +|+ -+..-+.++++++...+..+.
T Consensus 8 ~~ii~a~in~~ldkaE-DP~k~l~q~i~em~~~l~~~r~alA 48 (222)
T PRK10698 8 ADIVNANINALLEKAE-DPQKLVRLMIQEMEDTLVEVRSTSA 48 (222)
T ss_pred HHHHHhHHHHHHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544 455 556667788888777766666
No 329
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=0.29 Score=52.14 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=34.2
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1051 SHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~----~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
...|+||.+.-.+ ++|-||||. +|..|...+ ..||+|..+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 4589999985544 577899998 999998776 459999987654
No 330
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.86 E-value=0.3 Score=58.76 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=33.1
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||.-+- +..+...|. .+..++.. -..||. +|-||++|+||||.|.
T Consensus 100 ~~~tFdnFv~-g~~n~~a~~-~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 100 PDYTFENFVV-GPGNSFAYH-AALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCccccccc-CCchHHHHH-HHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 4689998663 345666665 33334432 123675 9999999999999885
No 331
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.85 E-value=0.31 Score=58.76 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=31.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|+||.-+. +.++...|. .+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~-g~~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVI-GSSNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccC-CCcHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 489998653 345566664 44544432111245 48899999999999885
No 332
>PRK09087 hypothetical protein; Validated
Probab=87.81 E-value=0.38 Score=52.55 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=33.5
Q ss_pred CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 136 ~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
......|+||.-+.. ..+..+|.. +.....-.+..++-||++||||||-+.
T Consensus 12 ~~~~~~~~~~~Fi~~-~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 12 FSHDPAYGRDDLLVT-ESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCCCChhceeec-CchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 334456899987743 344557763 333222235568999999999999986
No 333
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=87.72 E-value=73 Score=38.50 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHH
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQ 643 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qie 643 (1100)
+.+|++-.|.+..+....+.+.-..+++....+++-.+.
T Consensus 103 evre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lr 141 (531)
T PF15450_consen 103 EVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLR 141 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 456677777777777777777766666666666555433
No 334
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.58 E-value=1.1e+02 Score=40.32 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 644 NLEREIQEKRRQMRILEQRIIENGEASM-ANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 644 eLed~l~~~k~~i~~Le~ri~~sr~~~~-~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.+...|++++.+++.+++++.+..+... .......+...+.++..+|..+..||+.+..++..++.+|...
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444421 2223347788888899999999999988888888877776555
No 335
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.34 E-value=6.6 Score=34.55 Aligned_cols=60 Identities=23% Similarity=0.164 Sum_probs=34.0
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 778 HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 778 ~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
+..|.+..+.+..+...+..+...+.-+...+...+..+..++.+|..++..|++||...
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444445555555555666666666666677777777777776665543
No 336
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=87.15 E-value=13 Score=41.49 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 001324 891 DPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVE 928 (1100)
Q Consensus 891 ~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~le 928 (1100)
.++.++-+++-+.++.+--|.--.++.+.++-++.|++
T Consensus 116 ERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK 153 (351)
T PF07058_consen 116 ERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLK 153 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888777666554444455544444443
No 337
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=87.00 E-value=0.17 Score=59.09 Aligned_cols=41 Identities=24% Similarity=0.724 Sum_probs=34.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhc---------CCCCCCCcccc
Q 001324 1051 SHMCKVCFESPTAAILLPCRHFCLCKSCSLA---------CSECPICRTKI 1092 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~---------~~~CP~Cr~~i 1092 (1100)
...|.+|.+...+.+...|.|. ||..|... .-.||.|..+.
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3479999999999999999998 99999521 15699998753
No 338
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.92 E-value=74 Score=37.75 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 765 QSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 765 ~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
..|+..+|+|..+.-.+.=++.++....+.|-.-.+..+....+-..+-+.|.-+++|+.+....|++.
T Consensus 365 nkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 365 NKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 334555555554422222222222233333333333333333344444444444555555555555554
No 339
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.91 E-value=93 Score=38.87 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=9.8
Q ss_pred EeeccCCCCCcccc
Q 001324 178 FAYGVTSSGKTHTM 191 (1100)
Q Consensus 178 ~aYGqtgSGKT~Tm 191 (1100)
+-+|.||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 45688888887654
No 340
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.75 E-value=0.42 Score=56.92 Aligned_cols=50 Identities=30% Similarity=0.435 Sum_probs=31.3
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||.-.- +..+...|. ++..+...--..|| .++-||++|+||||.+.
T Consensus 105 ~~~tfd~fi~-g~~n~~a~~-~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFVV-GKSNRLAHA-AALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCccccccc-CCcHHHHHH-HHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 4689988432 345555664 34444443211244 47889999999999875
No 341
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.70 E-value=66 Score=36.94 Aligned_cols=30 Identities=13% Similarity=0.050 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001324 894 DLKLELQARKQREAALEAALAEKEFLEDEY 923 (1100)
Q Consensus 894 ~~k~~~~a~~~r~~aLE~el~~k~~~~~el 923 (1100)
..|.++...-..+..||-|-..-....+..
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~k~e~~ 270 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKSKWEKS 270 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666665544444433333
No 342
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=86.62 E-value=87 Score=38.25 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQ 630 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q 630 (1100)
-.+|+...+++.-...+..+...++.+...
T Consensus 341 ~~~e~~~r~~e~~kd~~~~~~~~~~~~~~s 370 (607)
T KOG0240|consen 341 LTAEEWKRKLEKKKDKNVALKEELEKLRNS 370 (607)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444
No 343
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.46 E-value=60 Score=36.56 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 690 CNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 690 l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+.++..++..+..+++.|+.+++.+
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555
No 344
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.30 E-value=12 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 757 VDELRKKVQSQETENEKLKLEHVQLSE 783 (1100)
Q Consensus 757 ~~~l~~~~~~lk~elE~lk~e~~~l~e 783 (1100)
+..++.+++..-+-|..|+.++.+|.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 345
>PRK07952 DNA replication protein DnaC; Validated
Probab=86.15 E-value=0.55 Score=51.82 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=33.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
..+||........|..++. .+..+++.+..|+ ..++.||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~-~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALS-KARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHH-HHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4678765433445555665 3444555554443 3688999999999999863
No 346
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.04 E-value=1.4e+02 Score=40.22 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
+.+.-+|+||||||..|
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56678899999999765
No 347
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=1 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=19.0
Q ss_pred HHHHhcCCce-eEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNG-TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~-ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.-. .++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3444444444 4999999999999886
No 348
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.98 E-value=10 Score=42.08 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
+...++.|..+...++.+.+.+...++.+...+..+..+.+.|+.++.........+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444433333
No 349
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.79 E-value=54 Score=36.34 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 781 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 781 l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
+.+.+..|.....+...+...+......+..++..|.+.+.....+...|..+|...+.
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555555555555555555555544443
No 350
>PF15294 Leu_zip: Leucine zipper
Probab=85.73 E-value=66 Score=36.07 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHH
Q 001324 686 LMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQ 765 (1100)
Q Consensus 686 L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~ 765 (1100)
|...++...+|.+.+...+..++.+...+ ..+..+++.+++.|+......+...+ ...-..++..++..+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~----l~Ek~kl~~~L~~lq~~~~~~~~k~~-----~~~~~q~l~dLE~k~a 200 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSA----LDEKSKLEAQLKELQDEQGDQKGKKD-----LSFKAQDLSDLENKMA 200 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcccc-----ccccccchhhHHHHHH
Confidence 44444444455555555555555555555 45556666666555553333332111 1122345556677777
Q ss_pred HHHHHHHHHHHH
Q 001324 766 SQETENEKLKLE 777 (1100)
Q Consensus 766 ~lk~elE~lk~e 777 (1100)
.++.++++.-.+
T Consensus 201 ~lK~e~ek~~~d 212 (278)
T PF15294_consen 201 ALKSELEKALQD 212 (278)
T ss_pred HHHHHHHHHHHH
Confidence 777776665443
No 351
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.62 E-value=0.76 Score=49.93 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 136 ~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
......|+||..++ ... ..++. ..+.++.. .+.+..|+-||++|+||||.+.
T Consensus 9 ~~~~~~~~~d~f~~-~~~-~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 9 LGPPPPPTFDNFVA-GEN-AELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCCChhhhccccc-CCc-HHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 34455689999873 222 33433 23333331 2345678999999999999874
No 352
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=85.52 E-value=72 Score=37.59 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 793 QKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 793 ~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
..+..-..++.+...+....++.+.+...+|-.+.++|++
T Consensus 427 ~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~ 466 (554)
T KOG4677|consen 427 DALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQE 466 (554)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444455556666666666666666666666555555544
No 353
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=85.40 E-value=1.5e+02 Score=39.96 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=13.6
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
+.+.-+|+||||||..+
T Consensus 31 ~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 55667899999998764
No 354
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=85.39 E-value=60 Score=35.26 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCcc-chHHHHHHHHHHHHHHHHHHH
Q 001324 614 AGEIAFSSSNLKRLVDQSVNDPD-GSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 614 ~~e~~~l~~el~~L~~q~~~~~~-~l~~qieeLed~l~~~k~~i~ 657 (1100)
.+-....+..+.++.+...+ |. -+...+.+++++|...+..+.
T Consensus 5 ~Rl~~iv~a~~n~~~dk~ED-P~~~l~q~irem~~~l~~ar~~lA 48 (219)
T TIGR02977 5 SRFADIVNSNLNALLDKAED-PEKMIRLIIQEMEDTLVEVRTTSA 48 (219)
T ss_pred HHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666655554 55 566667788877777776666
No 355
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.37 E-value=0.7 Score=49.92 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=33.2
Q ss_pred CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 136 YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 136 ~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
++....|+||.... + .+..++..+-. ++ ..+....|+-||++|+||||.+.
T Consensus 6 ~~~~~~~~~~~~~~-~-~~~~~~~~l~~-~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 6 VGLPDDPTFDNFYA-G-GNAELLAALRQ-LA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCCCchhhcCcCc-C-CcHHHHHHHHH-HH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 34445688887663 2 44455543222 22 25667789999999999999874
No 356
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.35 E-value=4.8 Score=42.61 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 826 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~q 826 (1100)
++...+++.+++.++.|.++|..++.++...++.++..-++++-|.+.+.+..+.+-.+..+|..+...|.-.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 3344444444555555555555555555555555555555555555555555555555555555555444433
No 357
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=85.31 E-value=48 Score=36.21 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 001324 790 VQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAA 847 (1100)
Q Consensus 790 ~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q 847 (1100)
..-.++++=...+.-..+.+..++.++...+.++.+...+++.++...+.....|+.+
T Consensus 17 ~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 17 ELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555667778888899999999999999999999999999999999999853
No 358
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=6.6 Score=47.66 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=51.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchH
Q 001324 598 MTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMV 677 (1100)
Q Consensus 598 ~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~ 677 (1100)
.....+..+.++++.|..+|..|..+++ +++..++.|++++.+.+..+. ........+.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~e-----------e~k~eie~L~~~l~~~~r~~~----------~~~~~~rei~ 477 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELE-----------ELKREIEKLESELERFRREVR----------DKVRKDREIR 477 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH----------HHHhhhHHHH
Confidence 3344556666677777777776666665 333455555555555555554 1112222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQ 708 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~Lq 708 (1100)
.+...+..|.+.|.++..+.+.+..+++.+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777766666666655544
No 359
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.07 E-value=33 Score=40.44 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
.++..+.++..++++..++-..+-.+...+..+|.....++...+...++++.-|++||.++.
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 444444555555544443333333333334444444433344445555666666666666554
No 360
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.97 E-value=6.8 Score=33.97 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 764 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS 824 (1100)
Q Consensus 764 ~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~ 824 (1100)
++.+.+.+++|-.....|...|..|..+...+..|...+.+-+..+...++.+..++..|+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3456677777777776676767777777777777777777777777777777666666554
No 361
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=84.73 E-value=43 Score=40.32 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 001324 721 ENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 721 ~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
....++.++..++.++..+...
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQR 276 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777653
No 362
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.69 E-value=29 Score=34.03 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
|...-++++.|+..+++++.++..+-+.+.+++-+|+.+|..+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777777777777777777777777777776553
No 363
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=84.61 E-value=91 Score=36.67 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001324 792 NQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESM 841 (1100)
Q Consensus 792 ~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~ 841 (1100)
+.+|-.|+..+++-+..|..++..+.+..+.|.....+|+.+|+-+..++
T Consensus 346 Q~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~nsL 395 (421)
T KOG2685|consen 346 QYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANSL 395 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 45667788888888899999999999999999999999999888776554
No 364
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=84.44 E-value=1.3e+02 Score=38.35 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHH
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDE 759 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~ 759 (1100)
-.+..++...+..+..+|+...+....+..+|..+ ..+...|.+.+.. ...++. ....+......
T Consensus 174 ~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~----~~~~~~l~~~~~~----~~~~~~-------~~~~l~~~~~~ 238 (670)
T KOG0239|consen 174 LKESLKLESDLGDLVTELEHVTNSISELESVLKSA----QEERRVLADSLGN----YADLRR-------NIKPLEGLEST 238 (670)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHhhh----hhhHHH-------hhhhhhhhhhH
Confidence 34455556666666666666666665555555554 2233334433320 001110 11122333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
.++++..++.++..++.....+... .....+.+.+.......+..++.....++.++. +-+.++.+|..++..++-
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQ---VSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 4445666777777777666444443 333444444444444444555555555555555 555666666666554443
No 365
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.43 E-value=11 Score=32.27 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 693 KAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 693 k~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
..+||.+....+-.++.+|+++ -..+.+|..++..|+.+++.++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqea----E~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEA----EKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 4577778888888888899888 5678888888888888887765
No 366
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.38 E-value=0.86 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=20.0
Q ss_pred HHHHhc-CCceeEEeeccCCCCCccccC
Q 001324 166 VKAAME-GVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~-G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+..++. +....++.||++|+|||+++.
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 333443 455689999999999999763
No 367
>PRK08181 transposase; Validated
Probab=84.35 E-value=0.84 Score=51.16 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=27.3
Q ss_pred cceecCCCCChhHHHhhh-hHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 144 FDRVFGPHANSQEVYDVA-ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 144 FD~Vf~~~~~q~~vy~~~-~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||-+.+
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHH
Confidence 444444554554444322 112332 4555 88999999999999865
No 368
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=84.27 E-value=97 Score=36.74 Aligned_cols=238 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 001324 637 GSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSAD------------- 703 (1100)
Q Consensus 637 ~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad------------- 703 (1100)
+|+.++++|++++...+.... ........-.++..++..|..+|... .++...+.
T Consensus 98 RL~~Ev~EL~eEl~~~~~~~~----------~~~~e~~~~~~l~~~~~~L~~~L~~l--~l~~~lg~~~~~~~~~~~~~~ 165 (388)
T PF04912_consen 98 RLRREVEELKEELEKRKADSK----------ESDEEKISPEELAQQLEELSKQLDSL--KLEELLGEETAQDLSDPQKAL 165 (388)
T ss_pred HHHHHHHHHHHHHHHHhhccc----------ccccccCChhhHHHHHHHHHHHHHHh--hcccccchhhhcccccchhhH
Q ss_pred HHHHHHHHHHh---------------------------hhHHhHHHHHHHHHHHHHHHHHHh--hccCCCCCCCCCCCCh
Q 001324 704 NRILQEQLQNK---------------------------LIHECSENKKLQEKVNLLEQQLAC--QNGDKSAGSSGQGTSD 754 (1100)
Q Consensus 704 ~~~LqeqL~~a---------------------------~~~e~~~~~el~~~~~~Lq~el~~--l~~~~~~~~~~~~e~~ 754 (1100)
.+.|..+|+.. .........+|..++..|+.-|-. -....-........+-
T Consensus 166 ~~kl~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~ 245 (388)
T PF04912_consen 166 SKKLLSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLL 245 (388)
T ss_pred HHHHHHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQ-ETENEKLKLEHVQLSEENSGLHVQNQKL---------AEEASYAKELASAAAVELKNLAGEVTKLS 824 (1100)
Q Consensus 755 ~~~~~l~~~~~~l-k~elE~lk~e~~~l~e~~~~L~~~~~kl---------e~e~~~~~ee~~~l~~E~~~l~e~v~kL~ 824 (1100)
..+..+..++..| ...|+.+...+..|....+.+...+... =.+.+..-.....+..-+=.+-+|+..|
T Consensus 246 ~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL- 324 (388)
T PF04912_consen 246 PALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTL- 324 (388)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHH
Q 001324 825 LQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQ 904 (1100)
Q Consensus 825 ~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~ 904 (1100)
..|-++....-..+.+++.+..++......+-+.+. .+.+.+.+ ++...+..+..+++
T Consensus 325 ---~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~-~ve~~~~~------------------N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 325 ---KSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN-KVEEKFKE------------------NMETIEKNVKKLEE 382 (388)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------------------HHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 001324 905 REAAL 909 (1100)
Q Consensus 905 r~~aL 909 (1100)
|+..|
T Consensus 383 Ri~~L 387 (388)
T PF04912_consen 383 RIAKL 387 (388)
T ss_pred HHhcc
No 369
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.96 E-value=19 Score=42.37 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=8.0
Q ss_pred CceEEEEEEEEEe
Q 001324 294 RSHTIFTLMIESS 306 (1100)
Q Consensus 294 RSH~if~i~v~~~ 306 (1100)
-.|.+|...|+..
T Consensus 147 ~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 147 VCHLLYVDRVEVT 159 (493)
T ss_pred ceeEEEEEEEEEE
Confidence 4577776665543
No 370
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=83.80 E-value=0.4 Score=52.85 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=39.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccceeec
Q 001324 1051 SHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDRLFA 1098 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~~i~~ 1098 (1100)
...|++|+.+..-+.+.||+|-+||..|.... +-||||-..+...+.|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 34799999999999999999999999885443 5599999887766654
No 371
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.64 E-value=10 Score=41.69 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhcc
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNG 741 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~ 741 (1100)
+|..|+.++...+ .++|.-+.+|.+ +.+++|++|++|+|-|+.++.
T Consensus 93 eLksQL~RMrEDW--IEEECHRVEAQL----------------ALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 93 ELKSQLARMREDW--IEEECHRVEAQL----------------ALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHh
Confidence 6666666555554 345665655544 346778888888888888775
No 372
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.53 E-value=1.1e+02 Score=36.97 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001324 604 DLLVEQVKMLAGEIAFSSSNLK 625 (1100)
Q Consensus 604 d~l~eq~k~l~~e~~~l~~el~ 625 (1100)
+.+..++..+..+++.+..+++
T Consensus 100 ~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 100 QLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 373
>PF14992 TMCO5: TMCO5 family
Probab=83.48 E-value=53 Score=36.79 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEASM 671 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~~~ 671 (1100)
....+=..|+..+..++.|+++|+.......
T Consensus 19 ~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~ 49 (280)
T PF14992_consen 19 ANQSLLQKIQEKEGAIQSLEREITKMDHIAD 49 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 3445666677778888888888886665533
No 374
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.38 E-value=75 Score=39.16 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=6.5
Q ss_pred eccCCCCCccc
Q 001324 180 YGVTSSGKTHT 190 (1100)
Q Consensus 180 YGqtgSGKT~T 190 (1100)
.|-||+|||-.
T Consensus 28 TGETGAGKSIi 38 (557)
T COG0497 28 TGETGAGKSII 38 (557)
T ss_pred ecCCCCcHhHH
Confidence 36666666543
No 375
>PRK08939 primosomal protein DnaI; Reviewed
Probab=83.38 E-value=0.6 Score=53.36 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=33.4
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcC-CceeEEeeccCCCCCccccCC
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G-~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
.+||.+-........++. .+..+++....| ..-.|+-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~-~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALM-AALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHH-HHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456554333335566666 346666665543 234689999999999999864
No 376
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.37 E-value=1.3e+02 Score=37.64 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHH
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAF 695 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~ 695 (1100)
.++.|.+..+..+..+.++-.+|+ ..+....+|.+|.+....
T Consensus 617 Kv~TL~~~~k~~~~~~~~~~~~i~-------------~~q~e~~klqeq~~Al~~ 658 (1104)
T COG4913 617 KVETLRETVKAMLSREDFYMIKIM-------------RQQGEYIKLQEQANALAH 658 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 577888888888888887777665 444555566666655443
No 377
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=83.24 E-value=14 Score=44.37 Aligned_cols=77 Identities=25% Similarity=0.228 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 766 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 766 ~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
-+-.|.|.|..+..+|.+-+.+|...+.-|-..+..+..+..-|..|++....---||+.++..|++||...+..+-
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888899999999999999999999999999999999999998888999999999999988876653
No 378
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=83.21 E-value=1.1e+02 Score=36.39 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 789 HVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 789 ~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
...+.-+...+...++...+|..++.+..+++..++.....|+.-+..+...
T Consensus 243 ~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~ 294 (384)
T PF03148_consen 243 DAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGP 294 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555555555666666666666666666666665555544443
No 379
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=83.19 E-value=1 Score=53.24 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=23.0
Q ss_pred hHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCcccc
Q 001324 155 QEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 155 ~~vy~~~~~~lv~~~l-~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
++-++.+...+ ..++ .+....++-||++|+|||+++
T Consensus 36 e~e~~~l~~~l-~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 36 EEQIEELAFAL-RPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHH-HHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 34444333333 3333 345567899999999999986
No 380
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=82.98 E-value=80 Score=34.80 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=50.9
Q ss_pred hhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhh
Q 001324 782 SEENSGLHVQNQKLAEEA-----SYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNR 856 (1100)
Q Consensus 782 ~e~~~~L~~~~~kle~e~-----~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r 856 (1100)
..+++.+....+.+.... ..+.+-...+......++.+..+...++.+....+......+..++..+...+-.+|
T Consensus 94 ~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSr 173 (239)
T PF05276_consen 94 AAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKLKRAIKKSR 173 (239)
T ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555655556665544 456666777777777777777777777777777777777777766655555554555
Q ss_pred hhhh
Q 001324 857 KYSD 860 (1100)
Q Consensus 857 ~~l~ 860 (1100)
=|.+
T Consensus 174 PYfe 177 (239)
T PF05276_consen 174 PYFE 177 (239)
T ss_pred HHHH
Confidence 5555
No 381
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.92 E-value=1.9e+02 Score=38.99 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhhcCCccchHH--HHHHHHHHHHHHHHHHHHHHH
Q 001324 616 EIAFSSSNLKRLVDQSVNDPDGSKV--QIQNLEREIQEKRRQMRILEQ 661 (1100)
Q Consensus 616 e~~~l~~el~~L~~q~~~~~~~l~~--qieeLed~l~~~k~~i~~Le~ 661 (1100)
|++-|..+-+-|.+.+...++-+++ +++.++++++.++..+.+=|+
T Consensus 941 ~~~~~~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~Er 988 (1320)
T PLN03188 941 ELASLMHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGER 988 (1320)
T ss_pred hhhhhhhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhH
Confidence 3344444444455556666665554 566888888888877753333
No 382
>PRK08727 hypothetical protein; Validated
Probab=82.85 E-value=0.95 Score=49.63 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=28.4
Q ss_pred CCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc-eeEEeeccCCCCCccccC
Q 001324 137 NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 137 ~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n-~ti~aYGqtgSGKT~Tm~ 192 (1100)
.....|+||.-+.... + .+..+ . .+..|+. -.|+-||++|+||||.+.
T Consensus 11 ~~~~~~~f~~f~~~~~-n--~~~~~-~----~~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 11 RYPSDQRFDSYIAAPD-G--LLAQL-Q----ALAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CCCCcCChhhccCCcH-H--HHHHH-H----HHHhccCCCeEEEECCCCCCHHHHHH
Confidence 3345688988664332 2 22211 1 2222332 359999999999999875
No 383
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.79 E-value=1.2e+02 Score=37.57 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=9.3
Q ss_pred hhhhhhHHhhhhcccccc
Q 001324 856 RKYSDGMKAGRKGRLSGR 873 (1100)
Q Consensus 856 r~~l~~~~~~~~e~l~~~ 873 (1100)
+++...+.+...++|..+
T Consensus 370 ~~~A~~L~~~v~~eL~~L 387 (557)
T COG0497 370 KKAAKELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 444555555555555543
No 384
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.76 E-value=1.5e+02 Score=37.72 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=5.6
Q ss_pred CEEEEEEeCC
Q 001324 101 SISVTIRFRP 110 (1100)
Q Consensus 101 ~i~V~vRvRP 110 (1100)
.+.|+.++|-
T Consensus 49 ~~~~~~~~~~ 58 (762)
T PLN03229 49 DLAVVAKIRK 58 (762)
T ss_pred ceEEEeeecc
Confidence 4555555554
No 385
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.72 E-value=1.5e+02 Score=37.75 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 805 LASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 805 e~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
....+..+++.+..++.++..+...+..++...+..+...+
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555444444444333
No 386
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=82.70 E-value=93 Score=35.34 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 001324 802 AKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 848 (1100)
Q Consensus 802 ~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~ 848 (1100)
...+.+++..|.+-|..+.+.++..-..|.+|+..+++.+..+|+-.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~h 289 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADH 289 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34455666666677777777777777777788777777777776544
No 387
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=82.57 E-value=2.5 Score=49.11 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=38.4
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhc----CCceeEEeeccCCCCCccc
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAME----GVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~----G~n~ti~aYGqtgSGKT~T 190 (1100)
..+.||++.+.-.--..+.+.++..++.+++. -.---|.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 45788888776666677777788788888774 2233577899999999975
No 388
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.89 E-value=9 Score=41.13 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ 712 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~ 712 (1100)
.++.++..|..|..++..|.+++..|...||+|++
T Consensus 176 ~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 176 KAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555544
No 389
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.86 E-value=87 Score=34.45 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=68.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 001324 672 ANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQG 751 (1100)
Q Consensus 672 ~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~ 751 (1100)
...++.+|.+.+.....++.+....|......+..++...+.+ -....+++..+..+...+..+....+ ..
T Consensus 76 ~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~a----q~~l~~~~~~l~ei~~~L~~~~~~~~-----~~ 146 (240)
T PF12795_consen 76 ANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERA----QQQLSEARQRLQEIRNQLQNLPPNGE-----SP 146 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH----HHHHHHHHHHHHHHHHHHhccCCCCc-----ch
Confidence 3456778888888888888888888887777777777777777 44566666666666666555432111 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLEH 778 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e~ 778 (1100)
........+.-+...+..+++.+..+.
T Consensus 147 l~~a~~~~l~ae~~~l~~~~~~le~el 173 (240)
T PF12795_consen 147 LSEAQRWLLQAELAALEAQIEMLEQEL 173 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888888888886
No 390
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=81.84 E-value=0.79 Score=47.21 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=20.9
Q ss_pred HHHHHHhcC-CceeEEeeccCCCCCccccCC
Q 001324 164 PVVKAAMEG-VNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 164 ~lv~~~l~G-~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
.+++.+-.+ .+..++..|+||||||++|.+
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344443333 356677788999999999973
No 391
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.75 E-value=13 Score=45.23 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH
Q 001324 896 KLELQARKQREAALEAALAEKEFLEDEYRKKVEESK 931 (1100)
Q Consensus 896 k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~ 931 (1100)
.+++.++..++..|+-+|+++...-++|.+++.+++
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777666666566665555555
No 392
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.43 E-value=0.51 Score=52.35 Aligned_cols=41 Identities=32% Similarity=0.791 Sum_probs=29.7
Q ss_pred cccccccc----ccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1053 MCKVCFES----PTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~----~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
.|+.|++. .++..-.|||-. +|..|+..+ ..||-||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 59999884 334444567766 899998665 559999987653
No 393
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.21 E-value=16 Score=32.64 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSG 787 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~ 787 (1100)
.|..++-|+|++|.....+.+....
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 394
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.16 E-value=17 Score=31.45 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001324 764 VQSQETENEKLKLEHVQLSE 783 (1100)
Q Consensus 764 ~~~lk~elE~lk~e~~~l~e 783 (1100)
+..++-|+|+||...+.|+.
T Consensus 20 I~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHH
Confidence 33444445544444433333
No 395
>PF13166 AAA_13: AAA domain
Probab=80.97 E-value=1.4e+02 Score=38.43 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.5
Q ss_pred eEEeeccCCCCCcc
Q 001324 176 TVFAYGVTSSGKTH 189 (1100)
Q Consensus 176 ti~aYGqtgSGKT~ 189 (1100)
.-+-||..|||||.
T Consensus 18 ~n~IYG~NGsGKSt 31 (712)
T PF13166_consen 18 INLIYGRNGSGKST 31 (712)
T ss_pred eEEEECCCCCCHHH
Confidence 34679999999985
No 396
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.95 E-value=99 Score=34.52 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 001324 603 MDLLVEQVKMLAG 615 (1100)
Q Consensus 603 ~d~l~eq~k~l~~ 615 (1100)
++.+..+++.+..
T Consensus 26 ~e~~~~~L~~~~~ 38 (264)
T PF06008_consen 26 IEDLTNQLRSYRS 38 (264)
T ss_pred HHHHHHHHHHHhc
Confidence 3344444443333
No 397
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.94 E-value=72 Score=32.90 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001324 897 LELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKL 951 (1100)
Q Consensus 897 ~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL 951 (1100)
.++....+....++..|...+..+..|..+-+++..+...|..-+.+.-.++..+
T Consensus 77 ~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi 131 (159)
T PF05384_consen 77 EDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQI 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666555555544444443
No 398
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=80.73 E-value=66 Score=36.63 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001324 639 KVQIQNLEREIQEKRRQMRILEQRIIENGEASM---AN--ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN 713 (1100)
Q Consensus 639 ~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~---~~--~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~ 713 (1100)
+..|++|+++++..+..+..+...+.+..-... .+ .++.+......++.++|...+..++.........+..|+.
T Consensus 87 ~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555444443333211110 00 1223444455555555555555555555555555555555
Q ss_pred h
Q 001324 714 K 714 (1100)
Q Consensus 714 a 714 (1100)
.
T Consensus 167 ~ 167 (301)
T PF06120_consen 167 L 167 (301)
T ss_pred H
Confidence 4
No 399
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.67 E-value=54 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 800 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~ 800 (1100)
....++..++..+..+||..+....+|..++++|....+.|..+..
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~ 54 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA 54 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666665555555555444444443333
No 400
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=80.05 E-value=0.4 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.784 Sum_probs=17.9
Q ss_pred ccccccc---cccceEEeCCCCcccchhh
Q 001324 1053 MCKVCFE---SPTAAILLPCRHFCLCKSC 1078 (1100)
Q Consensus 1053 ~C~iC~~---~~~~~vl~pC~H~~~C~~C 1078 (1100)
.|+||+- ..-..+..+|.|+ |-..|
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy-~H~~C 144 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHY-MHFAC 144 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHH-HHHHH
Confidence 6777765 3334778899999 66667
No 401
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.04 E-value=1.3e+02 Score=35.38 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 001324 612 MLAGEIAFSSSNLKRLVDQ 630 (1100)
Q Consensus 612 ~l~~e~~~l~~el~~L~~q 630 (1100)
.|...+.+++....+|.++
T Consensus 219 di~~kv~flerkv~eledd 237 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDD 237 (502)
T ss_pred hHHHHHHHHHHHHHHhhcc
Confidence 4666777777666655543
No 402
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.54 E-value=22 Score=31.33 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=45.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 781 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 781 l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
|...+..|++....+.++......+++.+..|-+.....+..+-.++..|..|++..+....++
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666777777777777777777777777777777777777777777777777666655444
No 403
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=79.54 E-value=2.4e+02 Score=38.11 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHH
Q 001324 925 KKVEESKRREEALENDLANMWVLV 948 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el~~~~~lv 948 (1100)
.++.++..+...++.++..+..|.
T Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~L~ 883 (1047)
T PRK10246 860 QQQQALMQQIAQATQQVEDWGYLN 883 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666665554444433
No 404
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.54 E-value=18 Score=38.43 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 801 YAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 801 ~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
.+-+++.++..+++.+.++++.|..+|.+|++.+...-....
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 344556666677777777777777777777776655444433
No 405
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.47 E-value=63 Score=32.78 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQL 711 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL 711 (1100)
.++.++..+...++.-.+|+.++...+.....|.
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666555554444443
No 406
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=79.27 E-value=1.3 Score=43.07 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
...+.......++.+|++|+|||+.+
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33333334456889999999999876
No 407
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=79.18 E-value=1.4 Score=52.36 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=51.0
Q ss_pred EEEEEEeCCCChhh-hhcCCeEEEeeCCCEEEe------------cCCCCCcceecceecCCCCChhHHHhhhhHHHHH-
Q 001324 102 ISVTIRFRPLSERE-FQRGDEIAWYADGDKIVR------------NEYNPATAYAFDRVFGPHANSQEVYDVAARPVVK- 167 (1100)
Q Consensus 102 i~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~------------~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~- 167 (1100)
-..+|++.+..+.+ +..|..+.+......++. ........++|+.|-+.+..-+.+.+.+..|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~ 168 (398)
T PTZ00454 89 SNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCP 168 (398)
T ss_pred CEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCH
Confidence 35677777766544 345555544332221110 0011123467788877665556666655556553
Q ss_pred HHhcC----CceeEEeeccCCCCCcccc
Q 001324 168 AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 168 ~~l~G----~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+.. ....|+-||++|+|||+..
T Consensus 169 ~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 169 ELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 23432 2456889999999999876
No 408
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.12 E-value=38 Score=38.57 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 807 SAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 807 ~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+.+..++..++++++|+|..|+||-.|
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNe 106 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNE 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 445778888999999999999999776
No 409
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.10 E-value=2.2e+02 Score=37.32 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 768 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 768 k~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
+.++..+..++..+....+.|...+..+..+.+.+..+..++...+...-+++.........+..+++.++....+.
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~r 337 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKR 337 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444455555544444444444444444444444444444444444443333
No 410
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.88 E-value=1e+02 Score=33.37 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001324 897 LELQARKQREAALEAALAE 915 (1100)
Q Consensus 897 ~~~~a~~~r~~aLE~el~~ 915 (1100)
..+...++++..+++...+
T Consensus 165 ~~~er~e~ki~~~ea~a~a 183 (221)
T PF04012_consen 165 DSFERMEEKIEEMEARAEA 183 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555556655555433
No 411
>PF13245 AAA_19: Part of AAA domain
Probab=78.84 E-value=1.1 Score=40.05 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
|..++. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33444558999999999975
No 412
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.64 E-value=2.3 Score=51.00 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=47.8
Q ss_pred EEEEEeCCCChhh-hhcCCeEEEeeCCCEEEecC---CC---------CCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNE---YN---------PATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~~~---~~---------~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
..+|++.++.+.+ +..|..+.+......++..- .+ ..-.-+|+.|.+-+..-+.+.+.+..|+...-
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 5788988887765 46676666655433332111 00 01113445554443334445554444544321
Q ss_pred -hc--CC--ceeEEeeccCCCCCcccc
Q 001324 170 -ME--GV--NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 170 -l~--G~--n~ti~aYGqtgSGKT~Tm 191 (1100)
+. |. .-.|+-||++|+|||++.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 22 21 224778999999999876
No 413
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=78.53 E-value=0.73 Score=50.81 Aligned_cols=42 Identities=31% Similarity=0.995 Sum_probs=29.6
Q ss_pred ccccccccccccceE--EeCCCCcccchhhhhcC--CCCCCCcccccc
Q 001324 1051 SHMCKVCFESPTAAI--LLPCRHFCLCKSCSLAC--SECPICRTKISD 1094 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~v--l~pC~H~~~C~~C~~~~--~~CP~Cr~~i~~ 1094 (1100)
-..|.-| +.++-+. ++||.|. ||-.|+..- +.||.|--.|..
T Consensus 90 VHfCd~C-d~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 90 VHFCDRC-DFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred eEeeccc-CCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHH
Confidence 3468778 3333331 3699998 999998654 579999877654
No 414
>PF14992 TMCO5: TMCO5 family
Probab=78.37 E-value=71 Score=35.84 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIEN---------------- 666 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~s---------------- 666 (1100)
...+.-++.+-++.+..+..++-... ..++..+++..-+++-+.++...+.....||+.-...
T Consensus 20 Nq~lL~ki~~~E~~iq~Le~Eit~~~-~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~ 98 (280)
T PF14992_consen 20 NQSLLQKIQEKEGAIQSLEREITKMD-HIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQET 98 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-cccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccC
Confidence 33445566666666666666665333 3333334444433444444433333333333322111
Q ss_pred ---hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH
Q 001324 667 ---GEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQ 734 (1100)
Q Consensus 667 ---r~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~ 734 (1100)
.+...+...+.......+.+...+-..+.++.+++.|......-..++ +..+.++++.+++++.
T Consensus 99 ~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq----~~~i~klkE~L~rmE~ 165 (280)
T PF14992_consen 99 NVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQ----ANEIKKLKEKLRRMEE 165 (280)
T ss_pred CCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 122233344555666666666667777777776666655543333334 4455666666654444
No 415
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=78.35 E-value=27 Score=35.98 Aligned_cols=78 Identities=23% Similarity=0.196 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001324 764 VQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHS 843 (1100)
Q Consensus 764 ~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~ 843 (1100)
......+++.|+.++..|..++..-+...++.+.+.....+ ....+.++|...+..|+.+|.+|...+....++...
T Consensus 45 n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed---~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~r 121 (158)
T PF09744_consen 45 NQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELED---QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSR 121 (158)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 33445566666666655555555555555555555544443 345566677777888888888887665554444433
Q ss_pred H
Q 001324 844 R 844 (1100)
Q Consensus 844 ~ 844 (1100)
+
T Consensus 122 l 122 (158)
T PF09744_consen 122 L 122 (158)
T ss_pred c
Confidence 3
No 416
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=78.08 E-value=1.9 Score=51.17 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=31.0
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G----~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+.||.|.+-+..-+.+.+.+..|+.. ..+.. ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 355666655544445555555555443 22322 2345889999999999765
No 417
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.82 E-value=21 Score=38.42 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 807 SAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 807 ~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
.++..+.+++..+++.|..+++.|++++
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 418
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=77.70 E-value=1.7 Score=48.70 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHhhhhHHHHHHHhcC-CceeEEeeccCCCCCccccC
Q 001324 157 VYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 157 vy~~~~~~lv~~~l~G-~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+++..+..++.+.+.| .---.+-||+.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3334444455555544 44457889999999999974
No 419
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=77.60 E-value=0.77 Score=37.16 Aligned_cols=38 Identities=29% Similarity=0.682 Sum_probs=16.1
Q ss_pred cccccccc--cceEE--eCCCCcccchhhhhcC-----CCCCCCcccc
Q 001324 1054 CKVCFESP--TAAIL--LPCRHFCLCKSCSLAC-----SECPICRTKI 1092 (1100)
Q Consensus 1054 C~iC~~~~--~~~vl--~pC~H~~~C~~C~~~~-----~~CP~Cr~~i 1092 (1100)
|++|.+.. ++.-| -+||+. +|..|...+ ..||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45565532 22233 367887 899996544 4599999874
No 420
>PRK10436 hypothetical protein; Provisional
Probab=77.37 E-value=1.2 Score=53.78 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=23.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+..++..-+|.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3555667778999999999999999986
No 421
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.34 E-value=27 Score=38.70 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
+..|.++.-.....+.++++++..++..|..++.+|.++|-+|-+.+.-.+.=
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555666666666667778888888888899999999999999987766543
No 422
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=77.25 E-value=0.71 Score=51.53 Aligned_cols=51 Identities=20% Similarity=0.647 Sum_probs=33.4
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcc--cccceeecc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRT--KISDRLFAF 1099 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~--~i~~~i~~f 1099 (1100)
++...|+||.....+-.++----++||..|.... ..||+-.. .++..+++|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 3456899999866655444443456999997653 67998554 455555554
No 423
>PRK06921 hypothetical protein; Provisional
Probab=77.24 E-value=1.9 Score=48.36 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=24.1
Q ss_pred HHhhhhHHHHHHHhc---CCceeEEeeccCCCCCccccC
Q 001324 157 VYDVAARPVVKAAME---GVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 157 vy~~~~~~lv~~~l~---G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+|. .+...++.+-. +....|+.||++|+||||.+.
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 443 45556665532 234568899999999999885
No 424
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=77.11 E-value=1e+02 Score=32.35 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=44.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 750 QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSL 825 (1100)
Q Consensus 750 ~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~ 825 (1100)
..++..++..++.++..|..+++-++.-+..-......+..++..+..+...-.-....=...++.|+.++.+|.+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~ 134 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTA 134 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888999999999999988755443444555555555555322222222222344555555555543
No 425
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.02 E-value=38 Score=37.08 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001324 676 MVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKV 729 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~ 729 (1100)
+.|+..++..|...=..+.+||....+|++.|+.-+..+ -.+..+.++.+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa----~~er~~~~~~i 83 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA----ESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 447777778888888888899999999999988888877 33444444444
No 426
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.89 E-value=89 Score=31.68 Aligned_cols=56 Identities=32% Similarity=0.353 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLA 737 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~ 737 (1100)
.+...+.+|..++.+++-++.....+.+.++.++..+ ....+.+.+++.+++..+.
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~----~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL----EAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666666666666666665 3344444555544444433
No 427
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.86 E-value=49 Score=36.26 Aligned_cols=21 Identities=33% Similarity=0.903 Sum_probs=14.6
Q ss_pred cccchhhhhcC----CCCCCCcccc
Q 001324 1072 FCLCKSCSLAC----SECPICRTKI 1092 (1100)
Q Consensus 1072 ~~~C~~C~~~~----~~CP~Cr~~i 1092 (1100)
+-.|..|...+ +.||+|...=
T Consensus 194 MK~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 194 MKTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred cchhHhHHHHHhcCCCCCccccccc
Confidence 34788886544 6699998753
No 428
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=76.69 E-value=3.2 Score=48.06 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCC-CCccccccccccccccceEEe
Q 001324 1024 PLVARLKARMQEMKEKEQKYQGN-GDPNSHMCKVCFESPTAAILL 1067 (1100)
Q Consensus 1024 ~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~C~iC~~~~~~~vl~ 1067 (1100)
...+++.+...+.-......... ..+....|.-|+..+.++.|.
T Consensus 243 tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 243 TLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLV 287 (358)
T ss_pred CHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEE
Confidence 45666666665555444444444 445566899999999998775
No 429
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=76.40 E-value=2.3 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.9
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|-+.+||.||++|+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3455678899999999999874
No 430
>PRK12704 phosphodiesterase; Provisional
Probab=76.18 E-value=2e+02 Score=35.58 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCccchHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHH
Q 001324 614 AGEIAFSSSNLKRLVDQSVNDPDGSKVQIQ-NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNE 692 (1100)
Q Consensus 614 ~~e~~~l~~el~~L~~q~~~~~~~l~~qie-eLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~e 692 (1100)
...+.....+-+.+.++.....+....+.. ++++++...+..+. ..-. +.+..+.+.+.+|..
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele----------~e~~------~~e~~L~qrE~rL~~ 93 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE----------KELR------ERRNELQKLEKRLLQ 93 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 001324 693 KAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENE 772 (1100)
Q Consensus 693 k~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE 772 (1100)
+++.|+.....++.-+..|+.. .....+..+.+..++.+++.+.. .+...|++-...-.+|-.
T Consensus 94 Ree~Le~r~e~Lekke~eL~~r----e~~Le~re~eLe~~~~~~~~~~~-------------~~~~~l~~~a~lt~~ea~ 156 (520)
T PRK12704 94 KEENLDRKLELLEKREEELEKK----EKELEQKQQELEKKEEELEELIE-------------EQLQELERISGLTAEEAK 156 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhCCCHHHHH
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 773 KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVEL 813 (1100)
Q Consensus 773 ~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~ 813 (1100)
+.--+..+-.-..+.-...++-.++-...++..++......
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a 197 (520)
T PRK12704 157 EILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQA 197 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=76.03 E-value=1.5 Score=48.51 Aligned_cols=9 Identities=56% Similarity=0.951 Sum_probs=5.9
Q ss_pred EEEecCCCC
Q 001324 321 NLIDLAGSE 329 (1100)
Q Consensus 321 ~lVDLAGsE 329 (1100)
+||||+|.-
T Consensus 253 sLIDLCGAT 261 (429)
T KOG3842|consen 253 SLIDLCGAT 261 (429)
T ss_pred chhhhccce
Confidence 467777754
No 432
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=76.02 E-value=1.3 Score=52.41 Aligned_cols=44 Identities=25% Similarity=0.847 Sum_probs=35.7
Q ss_pred ccccccccccccceEE-eCCCCcccchhhhhcC----CCCCCCcccccce
Q 001324 1051 SHMCKVCFESPTAAIL-LPCRHFCLCKSCSLAC----SECPICRTKISDR 1095 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl-~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~ 1095 (1100)
...|.+|+.-..+.+. ..|||. ||..|.... ..||.|+..+...
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchh
Confidence 3589999998888888 599999 999996443 5699998876544
No 433
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=76.00 E-value=1.7e+02 Score=34.36 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 001324 692 EKAFELEIKSADNRILQEQLQN 713 (1100)
Q Consensus 692 ek~~Ele~~~ad~~~LqeqL~~ 713 (1100)
..+..+++++++.+.||..|++
T Consensus 205 ~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 205 SLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344566777788888888765
No 434
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.92 E-value=2.1e+02 Score=35.40 Aligned_cols=8 Identities=50% Similarity=0.817 Sum_probs=3.3
Q ss_pred hhhccccc
Q 001324 865 GRKGRLSG 872 (1100)
Q Consensus 865 ~~~e~l~~ 872 (1100)
+|++++-.
T Consensus 214 ~~kgriig 221 (514)
T TIGR03319 214 EMKGRIIG 221 (514)
T ss_pred hhhccccC
Confidence 34444433
No 435
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=75.76 E-value=1.5 Score=40.27 Aligned_cols=37 Identities=30% Similarity=0.806 Sum_probs=28.6
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~ 1094 (1100)
..|.+| ..-|-.|=.| +|..|+..-..|.+|...|..
T Consensus 45 ~~C~~C----K~~v~q~g~~--YCq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKIC----KTKVHQPGAK--YCQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred cccccc----ccccccCCCc--cChhhhcccCcccccCCeecc
Confidence 479999 5555433444 699999999999999999844
No 436
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=75.51 E-value=1.4 Score=54.63 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=24.0
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+..++..-+|.|+..|+||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566777788999999999999999985
No 437
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=75.48 E-value=95 Score=31.30 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhh
Q 001324 686 LMSQCNEKAFELEIKSADNRI-LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQ 739 (1100)
Q Consensus 686 L~r~l~ek~~Ele~~~ad~~~-LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l 739 (1100)
-....+.|++|++++...+++ .+.+|..+ .+.-+++..+.++|+.+
T Consensus 32 als~f~AkEeeIErkKmeVrekVq~~Lgrv--------eEetkrLa~ireeLE~l 78 (159)
T PF04949_consen 32 ALSAFRAKEEEIERKKMEVREKVQAQLGRV--------EEETKRLAEIREELEVL 78 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHhh
Confidence 345678899999998888877 77777777 23334444555555543
No 438
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=75.27 E-value=1.9 Score=51.91 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=32.2
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHH--hcC--CceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAA--MEG--VNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~--l~G--~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||.-+- +..+...|. ++..+.... ..| ||. +|-||++|+||||.+.
T Consensus 106 ~~~tFdnFv~-g~~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 106 PLMTFANFLV-TPENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred ccccccceee-CCcHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 4689998653 345555554 444444332 223 454 6789999999999885
No 439
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=75.26 E-value=1.8e+02 Score=34.45 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 001324 644 NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELE 698 (1100)
Q Consensus 644 eLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele 698 (1100)
+|..++.-.+.....|++.+... ...+..++..+..|...+.+|.+=+.
T Consensus 120 eL~kE~~li~~~~~lL~~~l~~~------~eQl~~lr~ar~~Le~Dl~dK~~A~~ 168 (384)
T PF03148_consen 120 ELLKEVELIENIKRLLQRTLEQA------EEQLRLLRAARYRLEKDLSDKFEALE 168 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666655533 33455899999999999999987444
No 440
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.25 E-value=2e+02 Score=34.89 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRLVDQS 631 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L~~q~ 631 (1100)
.+..++..+...+..+...+.+|.-+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 94 NEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888877775433
No 441
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.24 E-value=1e+02 Score=36.96 Aligned_cols=90 Identities=9% Similarity=0.089 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchH
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSK----VQIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMV 677 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~----~qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~ 677 (1100)
.+.|+..+|+=..+++.++--|+.+.+.+.+.. +.+ +.|++++..+.++...|..+-..+.--|.. -.+..+.+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE 414 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEE 414 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHH
Confidence 455666666666666666666665554443332 111 133344433333333332221111111111 24455677
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEK 693 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek 693 (1100)
+|+.++.-|.++++..
T Consensus 415 ~Lr~Kldtll~~ln~P 430 (508)
T KOG3091|consen 415 ELRAKLDTLLAQLNAP 430 (508)
T ss_pred HHHHHHHHHHHHhcCh
Confidence 8888888888887776
No 442
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=75.17 E-value=1.7 Score=52.99 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+..++..-++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556677778889999999999999985
No 443
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.01 E-value=2.1e+02 Score=34.97 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELK 814 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~ 814 (1100)
|..+.+.......+...+.+.+...++
T Consensus 425 Lt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 425 LTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 444
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.86 E-value=1.2 Score=42.80 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=14.8
Q ss_pred EEeeccCCCCCccccCC
Q 001324 177 VFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~G 193 (1100)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999863
No 445
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.85 E-value=2.1e+02 Score=34.92 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=17.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 751 GTSDEYVDELRKKVQSQETENEKLKLE 777 (1100)
Q Consensus 751 ~e~~~~~~~l~~~~~~lk~elE~lk~e 777 (1100)
..+...+...+.....+++|++..+.-
T Consensus 312 ~~l~~~l~k~ke~n~~L~~Eie~V~~s 338 (570)
T COG4477 312 PILPDYLEKAKENNEHLKEEIERVKES 338 (570)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677777776665
No 446
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=74.56 E-value=3 Score=52.73 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=55.5
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCC---CCCCCchh----HHHHHHHHHhhc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGD---QNSPGIIP----LAIKDVFSIIQD 214 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~---~~~~Giip----r~~~~lF~~i~~ 214 (1100)
|....-|.|..+|..-|.. +++.+-.|...- ..+|.|||||||||.+- ...|-||- .....|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4445558888889887764 455555664332 37899999999998652 11222221 234455555543
Q ss_pred C-CCceEEEEEeeeeeeccee
Q 001324 215 T-PGREFLLRVSYLEIYNEVI 234 (1100)
Q Consensus 215 ~-~~~~~~v~vS~~EIyne~i 234 (1100)
. ++..+...||||..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 2 4556888999999997654
No 447
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.44 E-value=50 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhHHHHhhhh
Q 001324 830 LEKELLAARESMHSRGAAM 848 (1100)
Q Consensus 830 L~~EL~~~~~~~~~~e~q~ 848 (1100)
|..|....+.....|...+
T Consensus 51 L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 51 LERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555666433
No 448
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=74.40 E-value=1.4e+02 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
++.+.+.++....+..+-+++........++.+-..|
T Consensus 42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A 78 (225)
T COG1842 42 KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA 78 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555566666665555
No 449
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=74.30 E-value=2.9 Score=49.02 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=29.5
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHH-Hhc--CC--ceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKA-AME--GV--NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~-~l~--G~--n~ti~aYGqtgSGKT~Tm 191 (1100)
.+.||.|.+-+..-+.+.+.+..|+... .+. |. ...|+-||++|+|||+++
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3556666554444444544444443321 121 21 335899999999999876
No 450
>PRK09183 transposase/IS protein; Provisional
Probab=74.15 E-value=1.7 Score=48.50 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=26.9
Q ss_pred cceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 144 FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
||.-|.+..+...|..-..-.+ +-.|.| |+-||++|+||||.+.+
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHH
Confidence 4555655655554543222222 224554 66799999999998753
No 451
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=74.06 E-value=1.9e+02 Score=34.12 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHH
Q 001324 637 GSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCN----EKAFELEIKSADNRILQEQLQ 712 (1100)
Q Consensus 637 ~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~----ek~~Ele~~~ad~~~LqeqL~ 712 (1100)
++.-.++.|.+++.........||+.+..-........+....+....-..=-.+ |..-|++.+..--+.|...++
T Consensus 88 el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~ 167 (421)
T KOG2685|consen 88 ELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLE 167 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444332222222222222211111111111 122344444444445666666
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 713 NKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 713 ~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
.| ..+....++.-+.|+-.+.+-+
T Consensus 168 ~a----~~Ql~~nr~ar~~Le~Dl~dK~ 191 (421)
T KOG2685|consen 168 RA----EEQLRLNREARQNLERDLSDKQ 191 (421)
T ss_pred HH----HHHHHHhHHHHHHHhhhhhhhh
Confidence 66 6666666666666665555433
No 452
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=73.82 E-value=2.2e+02 Score=34.67 Aligned_cols=16 Identities=0% Similarity=0.046 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 764 VQSQETENEKLKLEHV 779 (1100)
Q Consensus 764 ~~~lk~elE~lk~e~~ 779 (1100)
+.-+++.|+.++..+.
T Consensus 142 l~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 142 LSPLREQLDGFRRQVQ 157 (475)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3345555555555553
No 453
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=73.81 E-value=1e+02 Score=32.77 Aligned_cols=161 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001324 727 EKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQS-QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKEL 805 (1100)
Q Consensus 727 ~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~-lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee 805 (1100)
++|.+||+.|..|+. .-+-...+++++.. +..||+.|+.....-......... ..
T Consensus 3 ekv~~LQ~AL~~LQa-----------a~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~-------------~~ 58 (205)
T PF12240_consen 3 EKVERLQQALAQLQA-----------ACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPS-------------NN 58 (205)
T ss_pred hHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC-------------Cc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccc-cccccccCcccCC
Q 001324 806 ASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLS-GRSTEISGVVSDD 884 (1100)
Q Consensus 806 ~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~-~~~~~~~~~~~~~ 884 (1100)
+..|...+..-++++=.|+++..+.+..+ -+...+.++- +++.+..-.++.. -..+...+.....
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkY-LEEs~mrq~a-------------~dAaa~aa~~rdttiI~~s~~~s~~~s 124 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKY-LEESAMRQFA-------------MDAAATAAAQRDTTIINHSPSESYNSS 124 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------------HHHHhhhHHHHHHHHHhcCCCCCCCcc
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 001324 885 FDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKK 926 (1100)
Q Consensus 885 ~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~ 926 (1100)
+ ...-.+-..+.-.++.+.|+..|++.|.+|...=.-|+.+
T Consensus 125 ~-r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 125 L-REEEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred c-cchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 454
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=73.11 E-value=1.2 Score=43.37 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..+++.||++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3578999999999999863
No 455
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=73.04 E-value=12 Score=46.71 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=23.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCccCCCCC
Q 001324 7 ARSSSPFSYRKPVTPYSSTSSTSSSFMNNRLMPRSCS-TSASSYFNSGN 54 (1100)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 54 (1100)
.+.|-|-++-.+|-|.++.+...++++.++..|++++ +++...+|+++
T Consensus 275 ~~~S~s~ppppap~p~~~~~~a~p~p~~~~~~pPppp~~ppv~~ln~~~ 323 (830)
T KOG1923|consen 275 QPGSGSGPPPPAPLPHTAQSDAAPSPLRLRCSPPPPPPFPPVGPLNSNL 323 (830)
T ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 3344455554445554554444355555555555544 44444444433
No 456
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.90 E-value=2 Score=43.68 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=20.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
++..++.|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4455666766 7888999999999864
No 457
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=72.66 E-value=1.7 Score=48.57 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667778999999999984
No 458
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=72.63 E-value=2.8 Score=41.07 Aligned_cols=62 Identities=24% Similarity=0.669 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhcCCCCccccccccccccccceEEe-C---CCCcccchhhhhc-------CCCCCCCcccccce
Q 001324 1033 MQEMKEKEQKYQGNGDPNSHMCKVCFESPTAAILL-P---CRHFCLCKSCSLA-------CSECPICRTKISDR 1095 (1100)
Q Consensus 1033 l~~~~~~~~~~~~~~~~~~~~C~iC~~~~~~~vl~-p---C~H~~~C~~C~~~-------~~~CP~Cr~~i~~~ 1095 (1100)
++.+.+..+--..-.++.-.+|.||.+...+-=|+ | || +-.|..|... .++||+|+..+.+.
T Consensus 62 I~~~n~r~qvmnvF~d~~lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 62 IKAINRRLQVMNVFLDPKLYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred HHHHHHHHHHheeecCCCceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 33333333333333344456899999977776665 2 56 5599999422 27899999988654
No 459
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=72.53 E-value=0.8 Score=51.35 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=35.7
Q ss_pred cccccccccccce-EEeCCCCcccchhhhh----cCCCCCCCcccccceeec
Q 001324 1052 HMCKVCFESPTAA-ILLPCRHFCLCKSCSL----ACSECPICRTKISDRLFA 1098 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~-vl~pC~H~~~C~~C~~----~~~~CP~Cr~~i~~~i~~ 1098 (1100)
-.|.+|-+-.+++ .+.-|-|. ||..|.- .+..||.|...|.+..+.
T Consensus 16 itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~pl 66 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTHPL 66 (331)
T ss_pred eehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcccc
Confidence 3799998766665 34579999 9999953 357799999999887643
No 460
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.53 E-value=5.8 Score=45.58 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=70.2
Q ss_pred CCEEEEEEeCCCChhh-hhcCCeEEEeeCCCEEEecCCC------------CCcceecceecCCCCChhHHHhhhhHHHH
Q 001324 100 DSISVTIRFRPLSERE-FQRGDEIAWYADGDKIVRNEYN------------PATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~~~~~------------~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv 166 (1100)
..-+.+|++.++.+++ +..|..+.+..+...|+..-.. ..-.-+|+.|=+-+..-++|.+.+--||.
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~ 172 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLK 172 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccccc
Confidence 4456788898887655 5677777776665554421111 11123445554444445667777766665
Q ss_pred HH-Hhc--CCce--eEEeeccCCCCCcccc--------------CCCC---CCCCchhHHHHHHHHHhhcC
Q 001324 167 KA-AME--GVNG--TVFAYGVTSSGKTHTM--------------HGDQ---NSPGIIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 167 ~~-~l~--G~n~--ti~aYGqtgSGKT~Tm--------------~G~~---~~~Giipr~~~~lF~~i~~~ 215 (1100)
.- .|+ |+.- .|+-||+.|+|||-.- .|+. .--|==+|.+++||....+.
T Consensus 173 ~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 173 NPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred CHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc
Confidence 42 332 4433 5899999999998642 2221 11255589999999988654
No 461
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.47 E-value=2 Score=49.95 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=20.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+..++.--.+.|+..|+||||||+||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3344444345779999999999999985
No 462
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.44 E-value=1.4 Score=47.84 Aligned_cols=44 Identities=25% Similarity=0.641 Sum_probs=32.0
Q ss_pred cccccccccccccc----------eEEeCCCCcccchhhhhcC------CCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTA----------AILLPCRHFCLCKSCSLAC------SECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~----------~vl~pC~H~~~C~~C~~~~------~~CP~Cr~~i~~ 1094 (1100)
+...|.||-.+-.. +.-+-|+|. |-+.|.... +.||.|...|+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45589999664332 334789998 888886543 669999998764
No 463
>PLN02939 transferase, transferring glycosyl groups
Probab=72.32 E-value=3.3e+02 Score=36.11 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC
Q 001324 612 MLAGEIAFSSSNLKRLVDQSVND 634 (1100)
Q Consensus 612 ~l~~e~~~l~~el~~L~~q~~~~ 634 (1100)
.+-.|-..++.+++-|.-.+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 160 KILTEKEALQGKINILEMRLSET 182 (977)
T ss_pred HHHHHHHHHHhhHHHHHHHhhhh
Confidence 33345556666666666566554
No 464
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=72.32 E-value=2.2 Score=50.14 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.3
Q ss_pred CceeEEeeccCCCCCccccC
Q 001324 173 VNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678899999999999984
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.12 E-value=1.6 Score=46.62 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+|.|+..|+||||||++|.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999984
No 466
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.07 E-value=2.7e+02 Score=35.05 Aligned_cols=309 Identities=9% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCccchHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHH
Q 001324 614 AGEIAFSSSNLKRLVDQSVNDPDGSKV--QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCN 691 (1100)
Q Consensus 614 ~~e~~~l~~el~~L~~q~~~~~~~l~~--qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ 691 (1100)
+.-+..+..+.+++.++.+...=+.+. .+-+.=..--..-.++. -...+...+.+++....++.|.++
T Consensus 784 EqrLE~L~~eRD~v~EqhA~~sFDvQK~QRlh~~FsqFvg~HLavA----------F~~dPE~~~~~~~~~Rnei~R~l~ 853 (1480)
T COG3096 784 EQRLESLHAERDVLSERHATLSFDVQKTQRLHQAFSRFIGSHLAVA----------FEADPEAEIRQLNSRRNELERALS 853 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh-------------hhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHH
Q 001324 692 EKAFELEIKSADNRILQEQLQNK-------------LIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVD 758 (1100)
Q Consensus 692 ek~~Ele~~~ad~~~LqeqL~~a-------------~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~ 758 (1100)
..+..-..+....+.-.+.+... .. .....++++++..+++.-.+.+. +....+..+-+-..++
T Consensus 854 ~~~~~~QQ~R~Q~d~aKe~~~~LnkLiPql~ll~dE~L--~dRveE~~E~L~~a~e~~~fI~q-hG~tls~LEpia~~Lq 930 (1480)
T COG3096 854 NHENDNQQQRIQFDQAKEGVTALNRLIPQLNLLADESL--ADRVEEIRERLDEAQEAARFIQQ-HGNTLSKLEPIASVLQ 930 (1480)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhhhhhccccchhH--HHHHHHHHHHHHHHHHHHHHHHH-hcchHHhhhhHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 759 ELRKKVQSQETENEKLKLEHVQLSEENSGL-HVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 759 ~l~~~~~~lk~elE~lk~e~~~l~e~~~~L-~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
.--..-..++++..+..+.......+.-.| ....+|.----...-+...+-..=.++|..++..++++..+-+++|...
T Consensus 931 sDPe~~e~L~~~y~qA~~~q~q~~qq~FAL~dv~qRr~HF~Y~ds~~~l~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~ 1010 (1480)
T COG3096 931 SDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQH 1010 (1480)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHhhhh---hhhhhhhhhhhhhHHhhhhcccccccccccCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 001324 838 RESMHSRGAAM---QTVNGVNRKYSDGMKAGRKGRLSGRSTEISGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALA 914 (1100)
Q Consensus 838 ~~~~~~~e~q~---q~v~~~~r~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~ 914 (1100)
+.+.+++..-+ +..-+..+..++ ++..++.++.- ...--.--.....+.+....|-.--.
T Consensus 1011 Q~Q~sqYnqvl~~LksS~~~K~~~l~----El~qEl~d~GV-------------~AD~gAeeRA~~RRDELh~~Lst~Rs 1073 (1480)
T COG3096 1011 QAQLSQYNQVLASLKSSYDTKKELLN----ELQQELQDIGV-------------RADSGAEERARIRRDELHAQLSTNRS 1073 (1480)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHhCC-------------CcCcchHHHHHHHHHHHHHHHhccHh
Q ss_pred HHHhhHHHHH---hhHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 001324 915 EKEFLEDEYR---KKVEESKRREEALENDLANMWVLVAKLK 952 (1100)
Q Consensus 915 ~k~~~~~el~---~~leEl~~~~~~L~~el~~~~~lv~kL~ 952 (1100)
++-..+..+. ..++.+..++..+++++..+..+|-.-+
T Consensus 1074 Rr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK 1114 (1480)
T COG3096 1074 RRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
No 467
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.95 E-value=2.7e+02 Score=34.86 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=7.4
Q ss_pred ccccccccccceE
Q 001324 1053 MCKVCFESPTAAI 1065 (1100)
Q Consensus 1053 ~C~iC~~~~~~~v 1065 (1100)
.|++|..+...++
T Consensus 494 ~~vi~iTH~~~~~ 506 (563)
T TIGR00634 494 HQVLCVTHLPQVA 506 (563)
T ss_pred CEEEEEEChHHHH
Confidence 4677766554443
No 468
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.82 E-value=2.8 Score=46.04 Aligned_cols=31 Identities=35% Similarity=0.394 Sum_probs=25.7
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 162 ~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++++.+.--.-|.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566777777778889999999999999984
No 469
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=71.67 E-value=2.3 Score=45.36 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|..++...+..++..|+.||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4555665555556678999999999874
No 470
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=71.57 E-value=3.1 Score=46.23 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=30.2
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G 193 (1100)
.|.|..+-.....+..+|.. +..++..+-.|. .++-||++|+||||-..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 34433332334456666663 344555555443 457799999999998753
No 471
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=71.50 E-value=2.2 Score=49.84 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=18.3
Q ss_pred CCceeEEeeccCCCCCccccC
Q 001324 172 GVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
--++.|+..|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 346899999999999999984
No 472
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=71.15 E-value=2.3e+02 Score=33.70 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCC-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHH
Q 001324 610 VKMLAGEIAFSSSNLKRLVDQSVND-----------PDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 678 (1100)
Q Consensus 610 ~k~l~~e~~~l~~el~~L~~q~~~~-----------~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~e 678 (1100)
++.+...+.......+-+.-|..-. .+.+..+++.++++.+.++..+..|+..-.+. +..+
T Consensus 109 ~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--------~~~~ 180 (447)
T KOG2751|consen 109 TKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--------SEED 180 (447)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--------chHH
Confidence 3444555555555555555444443 55677788999999999999998776633211 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 679 l~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+...+..+...-.+...+|+.+.....+|-.+|...
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~ 216 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKEL 216 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444444444444444444444444333
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.91 E-value=1.7 Score=41.74 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCccccC
Q 001324 175 GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 474
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=70.90 E-value=91 Score=36.56 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 633 NDPDGSKVQIQNLEREIQEKRRQMRILEQ 661 (1100)
Q Consensus 633 ~~~~~l~~qieeLed~l~~~k~~i~~Le~ 661 (1100)
......+.+++.|..++...-.+|..-|+
T Consensus 234 ~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 234 SALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666666664444
No 475
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.89 E-value=5.2 Score=43.54 Aligned_cols=113 Identities=20% Similarity=0.359 Sum_probs=62.4
Q ss_pred EEEEEeCCCChhhhhcC-CeEEEeeCCCEEE------------ecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 103 SVTIRFRPLSEREFQRG-DEIAWYADGDKIV------------RNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 103 ~V~vRvRP~~~~E~~~~-~~~~~~~~~~~~~------------~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
.-+||+--..++|+-.. ..+..+...+.++ ....+..-...|-.|=+-+..-++|-+.+--|+...-
T Consensus 100 ny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ 179 (408)
T KOG0727|consen 100 NYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHAD 179 (408)
T ss_pred ceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHH
Confidence 45788888888885332 2222222221111 1111111223444455555555666666666665543
Q ss_pred h---cCCc--eeEEeeccCCCCCccccC--------------CCC---CCCCchhHHHHHHHHHhhcC
Q 001324 170 M---EGVN--GTVFAYGVTSSGKTHTMH--------------GDQ---NSPGIIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 170 l---~G~n--~ti~aYGqtgSGKT~Tm~--------------G~~---~~~Giipr~~~~lF~~i~~~ 215 (1100)
+ =|+. -.|+.||+.|+|||...- |+. ..-|=-||.+.|+|....+.
T Consensus 180 ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred HHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 3 1333 258999999999985431 211 12366799999999987654
No 476
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=70.55 E-value=1.7 Score=47.23 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.2
Q ss_pred EEeeccCCCCCccccC
Q 001324 177 VFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~ 192 (1100)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3456999999999985
No 477
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=70.15 E-value=22 Score=36.90 Aligned_cols=92 Identities=25% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 001324 695 FELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKL 774 (1100)
Q Consensus 695 ~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~l 774 (1100)
+|+..+..++..|+++|... ..++..|+.++..|...+.. .++...+..++.++..+...++.+
T Consensus 72 eel~~ld~ei~~L~~el~~l----~~~~k~l~~eL~~L~~~~t~------------~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 72 EELAELDAEIKELREELAEL----KKEVKSLEAELASLSSEPTN------------EELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 775 KLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 822 (1100)
Q Consensus 775 k~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~k 822 (1100)
+......+. ++..++..+...+.....+
T Consensus 136 ~~~~~~vs~--------------------ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 136 RSGSKPVSP--------------------EEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HhCCCCCCH--------------------HHHHHHHHHHHHHHHHHHH
No 478
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.06 E-value=2.2e+02 Score=33.16 Aligned_cols=251 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 001324 674 ASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTS 753 (1100)
Q Consensus 674 ~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~ 753 (1100)
..+.+...++..|..+|..+.-+|+.+..+.+.+-+++... .....+-+..+...+..+..... ++
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~----~~~a~~~~~~~~~ee~~~~~~~~----------ei 73 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKE----QEEAEKKKAIVEEEEEEAEKQAK----------EI 73 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------HH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLE---------------------HVQLSEENSGLHVQNQKLAEEASYAKELASAAAVE 812 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e---------------------~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E 812 (1100)
.....+.+.++..-.-.++++... +....++.=-|..-+.+.-.+.+- +.++.+...
T Consensus 74 ~~~~~~a~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W--~~ak~~l~~ 151 (344)
T PF12777_consen 74 EEIKEEAEEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSW--ESAKKLLSD 151 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HH--HHHHCHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccH--HHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhHHHHhhhhhhhhh-hhhhhhhhHHhhhhccccccccccc
Q 001324 813 LKNLAGEVTKLSLQNAKLEKE-------------LLAARESMHSRGAAMQTVNG-VNRKYSDGMKAGRKGRLSGRSTEIS 878 (1100)
Q Consensus 813 ~~~l~e~v~kL~~qn~~L~~E-------------L~~~~~~~~~~e~q~q~v~~-~~r~~l~~~~~~~~e~l~~~~~~~~ 878 (1100)
..+.-.++...-.++-.-.-- .+.....+.....-+.||.. ..=...-....=++..++.++.
T Consensus 152 ~~~Fl~~L~~fd~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~--- 228 (344)
T PF12777_consen 152 SDNFLQRLKNFDKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEA--- 228 (344)
T ss_dssp STTHHHHHHHS-GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC---
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Q ss_pred CcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 001324 879 GVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEV 955 (1100)
Q Consensus 879 ~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~ 955 (1100)
........+.+.......++..|...+..-++.......++.+....+..|.+.+.|+.-|..|.
T Consensus 229 ------------~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 229 ------------ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
No 479
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=70.03 E-value=2.7 Score=47.04 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+..++..-.+.|+..|+||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 455565556778889999999999984
No 480
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=69.91 E-value=1.1e+02 Score=29.39 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
+...+..++..+...+...++|..+...|......|..++.-....+..++-....+...++. +++.|++.+...+..
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak~~l~~r~~k~ 91 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAKLELESRLLKA 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555555555555555555555554 445554444444433
No 481
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=69.69 E-value=2.8 Score=44.00 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCccccCC
Q 001324 175 GTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~G 193 (1100)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588999999999998754
No 482
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=69.68 E-value=1.5e+02 Score=35.17 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001324 432 SLIKKYQREISSLKEELDQL 451 (1100)
Q Consensus 432 ~~~~~lq~eI~~Lk~eL~ql 451 (1100)
..++.++..|.+++++|...
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e 23 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVE 23 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888877543
No 483
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.37 E-value=3.5 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=18.3
Q ss_pred HHhcCCceeEEeeccCCCCCcccc
Q 001324 168 AAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 168 ~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+....+.++.+|++|+|||+.+
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334444567888999999999876
No 484
>PRK11519 tyrosine kinase; Provisional
Probab=69.30 E-value=1.5e+02 Score=38.26 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEA 669 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~ 669 (1100)
.++=|++.+...+.++...|+++.+++..
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 485
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=69.27 E-value=2.5 Score=34.53 Aligned_cols=36 Identities=25% Similarity=0.929 Sum_probs=26.3
Q ss_pred ccccccc--cccceEEeCCC-----Ccccchhhhhc------CCCCCCCc
Q 001324 1053 MCKVCFE--SPTAAILLPCR-----HFCLCKSCSLA------CSECPICR 1089 (1100)
Q Consensus 1053 ~C~iC~~--~~~~~vl~pC~-----H~~~C~~C~~~------~~~CP~Cr 1089 (1100)
.|.||++ ...+.++.||. |+ +=..|... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 3899996 66778889996 55 67788432 24699995
No 486
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.05 E-value=1.9e+02 Score=32.00 Aligned_cols=119 Identities=14% Similarity=0.192 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHH
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN---DPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVD 678 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~---~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~e 678 (1100)
+|-++..++-.+.......+..|-.|..++.+ .+..+....+.|+-.++..++.++.|-- -...-..+
T Consensus 10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa---------~gc~a~~e 80 (389)
T KOG4687|consen 10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAA---------CGCDAKIE 80 (389)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHh---------cCCCchhh
Confidence 55566666666665555555555544433322 2333444455555544444444431100 01112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 001324 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLE 733 (1100)
Q Consensus 679 l~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq 733 (1100)
.-...+.|-..+.+..+|--++..|...|-.|+.+. -..++-+++...+.+
T Consensus 81 ~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adL----hgD~elfReTeAq~e 131 (389)
T KOG4687|consen 81 FGTERQDLAADIEETKEENLKLRTDREALLDQKADL----HGDCELFRETEAQFE 131 (389)
T ss_pred ccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH----hchHHHHHHHHHHHH
Confidence 333445666666666666667777777777776665 223444554444443
No 487
>PF13166 AAA_13: AAA domain
Probab=68.87 E-value=3.4e+02 Score=34.84 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcCCCCCcCCCCCcc
Q 001324 351 LTLGTVIGKLSEGKASHVPYRDSKL 375 (1100)
Q Consensus 351 ~~L~~vI~~L~~~~~~~iPyRdSkL 375 (1100)
++|.++|..+..++. +..|.++.+
T Consensus 30 Stlsr~l~~~~~~~~-~~~~~~~~~ 53 (712)
T PF13166_consen 30 STLSRILKSLCRGRG-DDKYISCSF 53 (712)
T ss_pred HHHHHHHHHHhhcCC-cccccCceE
Confidence 578888888875442 445555544
No 488
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.77 E-value=2.5e+02 Score=33.28 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHH
Q 001324 608 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLM 687 (1100)
Q Consensus 608 eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~ 687 (1100)
+.++.+.--+-.+.+..+.|..+++.+|++++-.++++++-+...+.++. +++.+..=|.
T Consensus 216 k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~--------------------~l~~K~~iL~ 275 (446)
T KOG4438|consen 216 KILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMV--------------------ELQEKAKILE 275 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-----HHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHH
Q 001324 688 SQCNEKAFELEIKSADNRILQEQL-----QNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRK 762 (1100)
Q Consensus 688 r~l~ek~~Ele~~~ad~~~LqeqL-----~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~ 762 (1100)
..+.-...=-....+=++.+++-. ..+.....+++-+|..++...+-++..++. ...+-+
T Consensus 276 ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~lk~---------------~e~~~k 340 (446)
T KOG4438|consen 276 EKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKLKM---------------FENLTK 340 (446)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSL--QNAKLEKELLAARES 840 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~--qn~~L~~EL~~~~~~ 840 (1100)
++..++.+.+...++. ....-+......+..-.+-..-++.-.+-...++.-..++.+... ..+++++|++..--.
T Consensus 341 qL~~~~kek~~~~Qd~--~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~a 418 (446)
T KOG4438|consen 341 QLNELKKEKESRRQDL--ENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVA 418 (446)
T ss_pred HHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q ss_pred HH
Q 001324 841 MH 842 (1100)
Q Consensus 841 ~~ 842 (1100)
++
T Consensus 419 I~ 420 (446)
T KOG4438|consen 419 IT 420 (446)
T ss_pred HH
No 489
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=68.61 E-value=28 Score=36.84 Aligned_cols=89 Identities=22% Similarity=0.255 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC--ccchHH-HHH-HHHHHHHHHHHHHHHHHH-HHhhhhcccccccchHHHHHHHHHH
Q 001324 612 MLAGEIAFSSSNLKRLVDQSVND--PDGSKV-QIQ-NLEREIQEKRRQMRILEQ-RIIENGEASMANASMVDMQQTVTRL 686 (1100)
Q Consensus 612 ~l~~e~~~l~~el~~L~~q~~~~--~~~l~~-qie-eLed~l~~~k~~i~~Le~-ri~~sr~~~~~~~~~~el~~~~~~L 686 (1100)
.|.+|++.|...+.+........ ...-+. .|+ +++.=|+=++.++..++. ..........+.+++..+.+|+.-|
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~L 179 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGL 179 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46667777777666666665541 111111 122 455555556666665542 2222222345667777888888888
Q ss_pred HHHHHHHHHHHHHH
Q 001324 687 MSQCNEKAFELEIK 700 (1100)
Q Consensus 687 ~r~l~ek~~Ele~~ 700 (1100)
+.-|+.|..||+.+
T Consensus 180 e~~L~~k~~eL~~L 193 (195)
T PF12761_consen 180 ESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887754
No 490
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.51 E-value=34 Score=29.76 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=16.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 781 LSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 823 (1100)
Q Consensus 781 l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL 823 (1100)
|..-.+.|...|..|-.+...+..+...+...++.+..+|..+
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 491
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=68.41 E-value=2.6e+02 Score=33.28 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 001324 799 ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 848 (1100)
Q Consensus 799 ~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~ 848 (1100)
+....-++.++.+|..--.+.+.+++-|.-.|+.++.....+..+++.+.
T Consensus 304 stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~ 353 (554)
T KOG4677|consen 304 STASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAG 353 (554)
T ss_pred chhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 55566788888888888888888888888888888776666666666544
No 492
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.40 E-value=41 Score=37.25 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHH
Q 001324 757 VDELRKKVQSQETENEKLKLEHVQLSEE----NSGLHVQNQKLAE 797 (1100)
Q Consensus 757 ~~~l~~~~~~lk~elE~lk~e~~~l~e~----~~~L~~~~~kle~ 797 (1100)
+.+++++|+.|+.=+|..|.-+.+.-.. --++..||+||+.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEs 163 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLES 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHH
Confidence 4567778888888888887764332111 1246677777665
No 493
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.37 E-value=88 Score=33.20 Aligned_cols=89 Identities=24% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 001324 759 ELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLS----LQNAKLEKEL 834 (1100)
Q Consensus 759 ~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~----~qn~~L~~EL 834 (1100)
..+.++..++.+++.++..+..+.+..+.....+ .-..+...+-....++..+++.|..++.++. ....+|.+++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~ 144 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-EESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344444445555555554444444333331111 1112333333334444444444444444322 2345667777
Q ss_pred HHHHHhHHHHhhhh
Q 001324 835 LAARESMHSRGAAM 848 (1100)
Q Consensus 835 ~~~~~~~~~~e~q~ 848 (1100)
...++.+..|-..|
T Consensus 145 ~~~~~~anrwTDNI 158 (188)
T PF03962_consen 145 KIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHhhH
Confidence 78888888887766
No 494
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.35 E-value=1.1e+02 Score=35.94 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEA 669 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~ 669 (1100)
.++-++.++...+.++...++++.+.+..
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555544
No 495
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.33 E-value=69 Score=35.52 Aligned_cols=41 Identities=15% Similarity=0.024 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 805 LASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 805 e~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
.=.++...+..|++++.++..+...|+.|+++++.---.+=
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666667777777777777777666665444433
No 496
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=68.30 E-value=33 Score=36.90 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001324 708 QEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSG 787 (1100)
Q Consensus 708 qeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~ 787 (1100)
.++|++..-.|-...++|..+| .+....+--++...+++.++..|.+|.+.|+.+...|.+.+..
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRV---------------AAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRV---------------AAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHH---------------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVEL 813 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~ 813 (1100)
|..++.++-.+.-.+.++.-.+....
T Consensus 123 L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 123 LLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhHHHH
No 497
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.30 E-value=36 Score=28.63 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 769 TENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 822 (1100)
Q Consensus 769 ~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~k 822 (1100)
.+|++|-.++..|.....+|..--.-+-.++..+++|+.++...+++....++|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~K 56 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYKK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
No 498
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=67.73 E-value=81 Score=34.09 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 001324 768 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAA 847 (1100)
Q Consensus 768 k~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q 847 (1100)
|..--+||..+ ..+.+.+--+..-.+++.++..+.|+++.|..|++.|...-..|.++|..|..+|+-.+.....+..|
T Consensus 69 K~~RrKLKNRV-AAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 69 KVQRRKLKNRV-AAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Q ss_pred hhhhhhhhhhhhhhHHhh
Q 001324 848 MQTVNGVNRKYSDGMKAG 865 (1100)
Q Consensus 848 ~q~v~~~~r~~l~~~~~~ 865 (1100)
.+. +.+-+.+..+.+
T Consensus 148 ~~~---~~~v~eee~~~~ 162 (292)
T KOG4005|consen 148 QQH---NTRVIEEENASA 162 (292)
T ss_pred HHH---hhHHHhhhhhcc
No 499
>PF12846 AAA_10: AAA-like domain
Probab=67.73 E-value=2.1 Score=47.96 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=0.0
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
|.-++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
No 500
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.54 E-value=2.6e+02 Score=33.01 Aligned_cols=143 Identities=24% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001324 718 ECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 797 (1100)
Q Consensus 718 e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~ 797 (1100)
+-.+++..++++.++-+.|+.|+. ++..++.++..+++.+.+.....-++-.|..+-.
T Consensus 233 ay~Qnk~akehv~km~kdle~Lq~------------------aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~---- 290 (575)
T KOG4403|consen 233 AYRQNKKAKEHVNKMMKDLEGLQR------------------AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD---- 290 (575)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccccccccc
Q 001324 798 EASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLSGRSTEI 877 (1100)
Q Consensus 798 e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~~~~~~~ 877 (1100)
|.-.+.++.+-+..+... +++..|..+..+-+.||+
T Consensus 291 ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele------------------------------------------ 326 (575)
T KOG4403|consen 291 EAPRLSELREGVENETSR--KELEQLRVALEKAEKELE------------------------------------------ 326 (575)
T ss_pred hhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHH------------------------------------------
Q ss_pred cCcccCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Q 001324 878 SGVVSDDFDSWNLDPDDLKLELQARKQREAALEAALAEKEFLEDEYRKKVEESKRREEALEN 939 (1100)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~k~~~~a~~~r~~aLE~el~~k~~~~~el~~~leEl~~~~~~L~~ 939 (1100)
.++.|.+...+++-++ ...|-|.+--+.....+.+.+.+++.-.+.|++
T Consensus 327 -------~nS~wsaP~aLQ~wLq------~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 327 -------ANSSWSAPLALQKWLQ------LTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred -------hccCCCCcHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Done!