Query 001324
Match_columns 1100
No_of_seqs 738 out of 3552
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 3.5E-88 1.2E-92 772.0 25.6 343 97-445 8-360 (365)
2 3cob_A Kinesin heavy chain-lik 100.0 7.3E-87 2.5E-91 761.2 30.6 343 97-453 2-352 (369)
3 3b6u_A Kinesin-like protein KI 100.0 5.6E-87 1.9E-91 761.9 28.1 342 96-438 17-372 (372)
4 2vvg_A Kinesin-2; motor protei 100.0 1.4E-86 4.6E-91 754.9 28.8 329 99-429 3-346 (350)
5 3bfn_A Kinesin-like protein KI 100.0 5.8E-87 2E-91 763.6 25.6 336 96-433 17-362 (388)
6 1goj_A Kinesin, kinesin heavy 100.0 2.8E-86 9.7E-91 754.5 30.4 332 98-431 4-343 (355)
7 1t5c_A CENP-E protein, centrom 100.0 1.3E-86 4.6E-91 755.6 27.5 328 99-430 3-340 (349)
8 2owm_A Nckin3-434, related to 100.0 3.8E-86 1.3E-90 772.1 29.5 330 96-427 34-422 (443)
9 2zfi_A Kinesin-like protein KI 100.0 2.7E-85 9.3E-90 750.2 27.7 329 99-427 3-363 (366)
10 1bg2_A Kinesin; motor protein, 100.0 5.3E-85 1.8E-89 736.5 27.0 315 97-418 4-325 (325)
11 3lre_A Kinesin-like protein KI 100.0 8.9E-85 3.1E-89 743.1 28.9 322 96-418 6-355 (355)
12 1x88_A Kinesin-like protein KI 100.0 4.7E-85 1.6E-89 746.4 24.0 328 97-426 5-358 (359)
13 2wbe_C Bipolar kinesin KRP-130 100.0 2.4E-84 8.3E-89 743.3 25.4 332 96-429 19-372 (373)
14 4a14_A Kinesin, kinesin-like p 100.0 6.4E-84 2.2E-88 734.6 27.4 320 94-416 5-344 (344)
15 3gbj_A KIF13B protein; kinesin 100.0 1.3E-83 4.4E-88 733.3 27.8 319 100-418 1-350 (354)
16 3nwn_A Kinesin-like protein KI 100.0 7.1E-84 2.4E-88 735.0 24.6 319 96-418 20-359 (359)
17 2h58_A Kinesin-like protein KI 100.0 6.7E-83 2.3E-87 720.8 30.6 318 98-419 2-329 (330)
18 2nr8_A Kinesin-like protein KI 100.0 1.7E-83 5.8E-88 731.6 24.4 321 94-418 17-358 (358)
19 2rep_A Kinesin-like protein KI 100.0 4.2E-82 1.4E-86 723.7 27.0 319 96-418 18-376 (376)
20 3t0q_A AGR253WP; kinesin, alph 100.0 5.8E-82 2E-86 719.1 27.7 320 98-422 3-348 (349)
21 2heh_A KIF2C protein; kinesin, 100.0 5.4E-82 1.8E-86 722.4 26.3 315 98-421 49-385 (387)
22 1f9v_A Kinesin-like protein KA 100.0 9.1E-82 3.1E-86 716.2 27.3 320 99-423 2-346 (347)
23 1ry6_A Internal kinesin; kines 100.0 8.9E-82 3.1E-86 717.9 27.1 320 101-427 1-340 (360)
24 1v8k_A Kinesin-like protein KI 100.0 8.7E-82 3E-86 724.6 25.3 317 98-423 69-407 (410)
25 3u06_A Protein claret segregat 100.0 1.9E-81 6.4E-86 726.3 28.2 325 98-429 57-394 (412)
26 4etp_A Kinesin-like protein KA 100.0 3.4E-80 1.2E-84 716.6 28.8 321 98-423 57-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 1.3E-79 4.6E-84 696.0 25.1 310 96-423 18-340 (344)
28 4h1g_A Maltose binding protein 100.0 1.6E-73 5.4E-78 713.6 27.8 317 98-419 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 5.2E-31 1.8E-35 243.0 3.8 99 343-441 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 4E-28 1.4E-32 231.7 8.9 97 347-443 1-97 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 2.7E-24 9.2E-29 229.7 8.3 262 98-423 22-294 (298)
32 2ea5_A Cell growth regulator w 99.2 6.1E-12 2.1E-16 108.7 4.4 51 1050-1100 14-64 (68)
33 2yho_A E3 ubiquitin-protein li 99.2 2E-11 7E-16 108.7 5.9 47 1053-1099 20-66 (79)
34 2vje_B MDM4 protein; proto-onc 99.1 1.6E-11 5.3E-16 104.6 1.1 50 1050-1099 6-61 (63)
35 4ic3_A E3 ubiquitin-protein li 99.1 1.1E-10 3.6E-15 102.8 6.0 47 1053-1099 26-72 (74)
36 2ecg_A Baculoviral IAP repeat- 99.0 1.2E-10 4.2E-15 102.6 4.2 47 1053-1099 27-73 (75)
37 2vje_A E3 ubiquitin-protein li 99.0 5.1E-11 1.7E-15 101.7 0.5 50 1050-1099 7-62 (64)
38 1c1g_A Tropomyosin; contractIl 98.8 7.6E-05 2.6E-09 80.8 41.1 28 603-630 1-28 (284)
39 1i84_S Smooth muscle myosin he 98.8 6E-09 2E-13 137.0 9.2 36 155-191 150-186 (1184)
40 3t6p_A Baculoviral IAP repeat- 98.7 3.6E-09 1.2E-13 119.8 4.4 48 1052-1099 296-343 (345)
41 1i84_S Smooth muscle myosin he 98.7 3.4E-08 1.2E-12 129.9 10.1 14 318-331 458-471 (1184)
42 1c1g_A Tropomyosin; contractIl 98.6 0.00023 8E-09 76.9 36.6 17 925-941 251-267 (284)
43 4ayc_A E3 ubiquitin-protein li 98.3 1.4E-07 4.8E-12 93.2 2.7 44 1052-1096 54-101 (138)
44 1chc_A Equine herpes virus-1 r 98.2 5.3E-07 1.8E-11 77.4 2.7 48 1051-1099 5-57 (68)
45 2d8t_A Dactylidin, ring finger 98.2 7.3E-07 2.5E-11 77.3 3.3 44 1050-1094 14-61 (71)
46 2ecn_A Ring finger protein 141 98.2 3.6E-07 1.2E-11 78.9 1.3 49 1049-1099 13-65 (70)
47 2ysl_A Tripartite motif-contai 98.1 8.9E-07 3E-11 77.1 3.1 44 1050-1094 19-69 (73)
48 2csy_A Zinc finger protein 183 98.1 8.3E-07 2.8E-11 79.1 3.0 46 1049-1095 13-62 (81)
49 2xeu_A Ring finger protein 4; 98.1 1E-06 3.6E-11 74.3 2.0 48 1051-1099 3-63 (64)
50 2y1n_A E3 ubiquitin-protein li 98.1 1.8E-06 6E-11 98.3 4.2 47 1052-1099 333-384 (389)
51 2ecm_A Ring finger and CHY zin 98.1 1.6E-06 5.3E-11 71.0 2.8 44 1050-1094 4-55 (55)
52 2ea6_A Ring finger protein 4; 98.0 1.1E-06 3.9E-11 75.3 1.8 45 1049-1094 13-68 (69)
53 3ng2_A RNF4, snurf, ring finge 98.0 1.1E-06 3.6E-11 76.1 1.4 49 1050-1099 9-70 (71)
54 2ct2_A Tripartite motif protei 98.0 2.1E-06 7.2E-11 77.5 3.0 46 1048-1094 12-68 (88)
55 2egp_A Tripartite motif-contai 98.0 2.1E-06 7.3E-11 75.8 2.9 45 1049-1094 10-65 (79)
56 2kiz_A E3 ubiquitin-protein li 98.0 2.4E-06 8.3E-11 73.4 3.1 49 1049-1098 12-67 (69)
57 1bor_A Transcription factor PM 98.0 1.8E-06 6.2E-11 71.2 2.0 44 1050-1094 5-49 (56)
58 2djb_A Polycomb group ring fin 98.0 2.9E-06 9.8E-11 73.7 3.2 47 1049-1096 13-64 (72)
59 2ecw_A Tripartite motif-contai 98.0 3.6E-06 1.2E-10 75.2 3.8 44 1050-1094 18-71 (85)
60 2ecy_A TNF receptor-associated 98.0 2E-06 6.9E-11 73.3 1.8 45 1049-1094 13-62 (66)
61 3fl2_A E3 ubiquitin-protein li 98.0 3.8E-06 1.3E-10 81.2 4.0 41 1053-1094 54-99 (124)
62 1e4u_A Transcriptional repress 98.0 1.8E-06 6.1E-11 76.4 1.4 50 1049-1099 9-67 (78)
63 2ecv_A Tripartite motif-contai 97.9 3.9E-06 1.3E-10 75.0 3.1 44 1050-1094 18-71 (85)
64 1iym_A EL5; ring-H2 finger, ub 97.9 5E-06 1.7E-10 68.0 3.4 43 1050-1093 4-54 (55)
65 2l0b_A E3 ubiquitin-protein li 97.9 3.3E-06 1.1E-10 77.0 2.4 45 1050-1095 39-90 (91)
66 2yur_A Retinoblastoma-binding 97.9 5.1E-06 1.7E-10 72.6 3.3 45 1048-1093 12-63 (74)
67 1jm7_A BRCA1, breast cancer ty 97.9 5.4E-06 1.9E-10 78.4 3.6 41 1053-1094 23-70 (112)
68 2ect_A Ring finger protein 126 97.9 4.6E-06 1.6E-10 73.5 2.8 45 1050-1095 14-65 (78)
69 1x4j_A Ring finger protein 38; 97.9 4.4E-06 1.5E-10 73.1 2.2 44 1050-1094 22-72 (75)
70 3ztg_A E3 ubiquitin-protein li 97.8 5.6E-06 1.9E-10 75.5 2.8 44 1048-1092 10-60 (92)
71 2ep4_A Ring finger protein 24; 97.8 5.7E-06 1.9E-10 72.2 2.7 47 1050-1097 14-67 (74)
72 1g25_A CDK-activating kinase a 97.8 4.3E-06 1.5E-10 71.1 1.4 42 1052-1094 4-55 (65)
73 3lrq_A E3 ubiquitin-protein li 97.8 1.1E-05 3.7E-10 75.0 3.7 41 1053-1094 24-70 (100)
74 3l11_A E3 ubiquitin-protein li 97.8 8.1E-06 2.8E-10 77.8 2.8 42 1052-1094 16-62 (115)
75 1z6u_A NP95-like ring finger p 97.8 7E-06 2.4E-10 82.1 2.0 43 1052-1095 79-126 (150)
76 1t1h_A Gspef-atpub14, armadill 97.7 9.4E-06 3.2E-10 71.5 2.5 45 1049-1094 6-55 (78)
77 2y43_A E3 ubiquitin-protein li 97.7 9.3E-06 3.2E-10 75.1 2.0 41 1053-1094 24-69 (99)
78 2ckl_A Polycomb group ring fin 97.7 1.2E-05 4E-10 75.7 2.5 44 1051-1095 15-63 (108)
79 2ckl_B Ubiquitin ligase protei 97.7 9E-06 3.1E-10 82.6 1.8 42 1051-1093 54-101 (165)
80 2ysj_A Tripartite motif-contai 97.6 2.1E-05 7.1E-10 66.3 2.9 39 1049-1088 18-63 (63)
81 2ecj_A Tripartite motif-contai 97.6 1.6E-05 5.3E-10 65.7 1.9 38 1050-1088 14-58 (58)
82 1jm7_B BARD1, BRCA1-associated 97.6 2E-05 7E-10 75.3 2.8 40 1053-1093 24-66 (117)
83 3hct_A TNF receptor-associated 97.6 2.6E-05 8.7E-10 74.7 2.8 45 1049-1094 16-65 (118)
84 1v87_A Deltex protein 2; ring- 97.4 2.8E-05 9.4E-10 73.8 1.0 43 1052-1095 26-95 (114)
85 1rmd_A RAG1; V(D)J recombinati 97.4 4.2E-05 1.4E-09 72.9 2.0 42 1052-1094 24-70 (116)
86 2c2l_A CHIP, carboxy terminus 97.3 0.0001 3.5E-09 81.0 4.3 46 1048-1094 205-255 (281)
87 2kre_A Ubiquitin conjugation f 97.3 7.1E-05 2.4E-09 69.4 2.4 45 1049-1094 27-75 (100)
88 2kr4_A Ubiquitin conjugation f 97.3 9.2E-05 3.2E-09 66.5 2.6 45 1049-1094 12-60 (85)
89 1wgm_A Ubiquitin conjugation f 97.3 9.8E-05 3.3E-09 68.2 2.6 45 1049-1094 20-69 (98)
90 2f42_A STIP1 homology and U-bo 97.2 0.00024 8.1E-09 72.6 5.5 49 1045-1094 100-153 (179)
91 4ap4_A E3 ubiquitin ligase RNF 97.2 7.2E-05 2.5E-09 72.5 1.2 44 1050-1094 6-60 (133)
92 2ecl_A Ring-box protein 2; RNF 97.2 0.00011 3.6E-09 65.4 2.2 42 1052-1094 16-76 (81)
93 3knv_A TNF receptor-associated 97.2 3.7E-05 1.3E-09 76.0 -0.9 43 1049-1092 29-76 (141)
94 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00014 4.9E-09 70.4 1.7 49 1050-1099 71-132 (133)
95 2v71_A Nuclear distribution pr 97.1 0.13 4.5E-06 52.4 23.3 41 797-837 88-128 (189)
96 3vkg_A Dynein heavy chain, cyt 97.0 0.053 1.8E-06 76.6 27.0 76 753-828 2012-2087(3245)
97 3hcs_A TNF receptor-associated 96.9 0.00031 1.1E-08 71.5 2.8 46 1048-1094 15-65 (170)
98 3na7_A HP0958; flagellar bioge 96.9 0.095 3.2E-06 56.8 22.4 36 678-713 50-85 (256)
99 2dfs_A Myosin-5A; myosin-V, in 96.8 0.01 3.5E-07 76.8 16.1 34 156-190 138-172 (1080)
100 2v71_A Nuclear distribution pr 96.8 0.19 6.6E-06 51.1 21.9 109 707-836 47-155 (189)
101 3dpl_R Ring-box protein 1; ubi 96.8 0.00044 1.5E-08 64.7 2.2 41 1052-1093 38-100 (106)
102 3vkg_A Dynein heavy chain, cyt 96.7 0.083 2.8E-06 74.6 24.3 77 757-833 2030-2106(3245)
103 2yu4_A E3 SUMO-protein ligase 96.6 0.00088 3E-08 61.2 3.1 41 1050-1091 6-59 (94)
104 1wt6_A Myotonin-protein kinase 96.6 0.0059 2E-07 52.7 7.5 54 901-954 11-74 (81)
105 4a0k_B E3 ubiquitin-protein li 96.5 0.0004 1.4E-08 66.0 0.0 40 1053-1093 50-111 (117)
106 3o0z_A RHO-associated protein 96.3 0.39 1.3E-05 47.8 19.7 75 757-831 64-138 (168)
107 1wim_A KIAA0161 protein; ring 96.1 0.0011 3.8E-08 60.5 0.3 41 1050-1091 4-61 (94)
108 2d8s_A Cellular modulator of i 96.1 0.0028 9.7E-08 56.0 2.9 45 1050-1095 14-71 (80)
109 3htk_C E3 SUMO-protein ligase 95.8 0.0025 8.6E-08 68.3 1.9 43 1050-1093 180-231 (267)
110 2efr_A General control protein 95.6 1.6 5.6E-05 43.0 20.5 43 793-835 108-150 (155)
111 3vk6_A E3 ubiquitin-protein li 95.4 0.0053 1.8E-07 55.7 2.1 42 1053-1096 3-51 (101)
112 2dfs_A Myosin-5A; myosin-V, in 95.3 0.45 1.5E-05 61.6 20.0 38 199-236 406-445 (1080)
113 2v66_B Nuclear distribution pr 95.1 0.93 3.2E-05 42.1 15.8 80 763-845 4-83 (111)
114 2efr_A General control protein 95.0 3 0.0001 41.1 20.7 62 784-845 64-125 (155)
115 3s84_A Apolipoprotein A-IV; fo 94.8 3.8 0.00013 44.5 22.9 17 854-870 231-247 (273)
116 3oja_B Anopheles plasmodium-re 94.2 0.59 2E-05 56.6 16.6 116 603-742 465-580 (597)
117 3o0z_A RHO-associated protein 94.1 5.2 0.00018 39.8 23.0 21 758-778 93-113 (168)
118 2bay_A PRE-mRNA splicing facto 94.0 0.017 5.9E-07 48.1 1.6 41 1052-1093 4-49 (61)
119 3oja_B Anopheles plasmodium-re 94.0 0.52 1.8E-05 57.1 15.5 42 804-845 537-578 (597)
120 2fxo_A Myosin heavy chain, car 93.7 4.4 0.00015 38.8 18.2 43 693-739 11-53 (129)
121 3ec2_A DNA replication protein 93.1 0.023 7.8E-07 57.6 1.0 52 140-192 5-56 (180)
122 3tnu_A Keratin, type I cytoske 91.8 1.6 5.5E-05 42.0 12.2 91 678-803 35-125 (131)
123 2v66_B Nuclear distribution pr 91.8 8.1 0.00028 35.8 16.1 101 721-838 4-104 (111)
124 3tnu_B Keratin, type II cytosk 91.6 2.4 8.4E-05 40.6 13.2 90 678-802 33-122 (129)
125 1x79_B RAB GTPase binding effe 91.6 1.3 4.5E-05 41.1 10.6 63 678-740 3-65 (112)
126 2w58_A DNAI, primosome compone 91.6 0.063 2.2E-06 55.3 2.1 51 141-192 21-72 (202)
127 2fxo_A Myosin heavy chain, car 91.3 5.1 0.00018 38.3 15.1 83 763-845 14-96 (129)
128 3ol1_A Vimentin; structural ge 90.9 3.3 0.00011 39.2 13.0 88 612-741 17-104 (119)
129 2qgz_A Helicase loader, putati 90.9 0.079 2.7E-06 59.0 2.1 51 141-192 120-170 (308)
130 1x79_B RAB GTPase binding effe 90.6 1.2 4E-05 41.4 9.2 100 600-708 5-104 (112)
131 1vyx_A ORF K3, K3RING; zinc-bi 90.6 0.083 2.9E-06 43.8 1.5 44 1050-1093 5-58 (60)
132 3u59_A Tropomyosin beta chain; 89.7 11 0.00036 34.5 15.0 69 758-826 5-73 (101)
133 3u1c_A Tropomyosin alpha-1 cha 89.7 11 0.00037 34.5 15.0 66 758-823 5-70 (101)
134 3s4r_A Vimentin; alpha-helix, 89.1 4.2 0.00014 36.6 11.6 34 921-954 59-92 (93)
135 2w83_C C-JUN-amino-terminal ki 88.3 2.8 9.6E-05 35.8 9.0 69 767-835 7-75 (77)
136 2jee_A YIIU; FTSZ, septum, coi 88.2 4.3 0.00015 35.4 10.4 19 766-784 24-42 (81)
137 3swk_A Vimentin; cytoskeleton, 88.2 6.3 0.00021 35.0 11.9 40 699-742 46-85 (86)
138 3ghg_A Fibrinogen alpha chain; 87.9 2.4 8.1E-05 49.0 11.1 23 605-627 54-76 (562)
139 2ocy_A RAB guanine nucleotide 87.8 22 0.00075 34.9 17.8 24 763-788 80-103 (154)
140 3nmd_A CGMP dependent protein 87.1 1.5 5E-05 37.4 6.6 47 682-732 20-66 (72)
141 3hnw_A Uncharacterized protein 87.0 2.7 9.2E-05 40.8 9.5 63 673-739 67-129 (138)
142 3t15_A Ribulose bisphosphate c 86.4 0.24 8.1E-06 54.6 2.0 48 144-191 2-53 (293)
143 3k1l_B Fancl; UBC, ring, RWD, 86.4 0.14 4.7E-06 56.8 0.0 33 925-957 177-209 (381)
144 4b4t_M 26S protease regulatory 85.5 0.87 3E-05 52.9 6.2 75 141-215 177-273 (434)
145 3tnu_B Keratin, type II cytosk 85.5 8.8 0.0003 36.7 12.3 51 750-803 31-81 (129)
146 3oja_A Leucine-rich immune mol 85.4 61 0.0021 37.7 23.4 66 761-833 420-485 (487)
147 4etp_B Spindle POLE BODY-assoc 85.2 4.5 0.00015 44.2 11.0 120 99-241 58-183 (333)
148 4gkw_A Spindle assembly abnorm 84.4 27 0.00092 32.7 18.4 39 675-713 12-50 (167)
149 2ct0_A Non-SMC element 1 homol 84.0 0.75 2.6E-05 39.7 3.6 46 1050-1096 14-66 (74)
150 2v4h_A NF-kappa-B essential mo 84.0 8.3 0.00028 35.4 10.4 25 685-709 28-52 (110)
151 4b4t_K 26S protease regulatory 83.9 1.2 4.1E-05 51.7 6.4 113 103-215 117-264 (428)
152 3tnu_A Keratin, type I cytoske 83.0 8 0.00027 37.1 10.8 48 751-801 34-81 (131)
153 3bos_A Putative DNA replicatio 82.5 0.53 1.8E-05 49.0 2.5 45 142-192 25-70 (242)
154 3ghg_A Fibrinogen alpha chain; 82.5 13 0.00044 43.1 13.7 53 788-840 108-160 (562)
155 2r62_A Cell division protease 82.5 0.54 1.8E-05 50.5 2.6 50 141-191 7-61 (268)
156 2bjv_A PSP operon transcriptio 82.5 0.41 1.4E-05 51.5 1.6 45 141-191 2-46 (265)
157 3h4m_A Proteasome-activating n 81.2 0.51 1.7E-05 51.1 1.8 51 141-191 13-68 (285)
158 1jbk_A CLPB protein; beta barr 80.8 0.69 2.4E-05 46.0 2.5 30 163-192 32-61 (195)
159 3vfd_A Spastin; ATPase, microt 80.8 0.29 9.8E-06 56.1 -0.4 52 140-191 110-165 (389)
160 4b4t_L 26S protease subunit RP 80.7 2.2 7.5E-05 49.6 7.0 74 142-215 178-273 (437)
161 3cf0_A Transitional endoplasmi 80.6 0.54 1.9E-05 51.8 1.8 51 141-191 11-66 (301)
162 1l8q_A Chromosomal replication 80.5 0.73 2.5E-05 51.1 2.8 49 141-192 7-55 (324)
163 3bas_A Myosin heavy chain, str 80.4 25 0.00086 31.2 12.3 27 813-839 58-84 (89)
164 3te6_A Regulatory protein SIR3 80.2 0.49 1.7E-05 52.8 1.2 27 165-191 36-62 (318)
165 3a7p_A Autophagy protein 16; c 79.6 28 0.00095 33.9 13.0 67 762-835 68-134 (152)
166 3q8t_A Beclin-1; autophagy, AT 79.5 35 0.0012 30.8 13.6 37 677-713 56-92 (96)
167 4b4t_J 26S protease regulatory 79.5 2.9 9.8E-05 48.0 7.3 74 142-215 145-240 (405)
168 1g8p_A Magnesium-chelatase 38 79.2 0.66 2.3E-05 51.7 1.9 44 140-191 19-62 (350)
169 3l4q_C Phosphatidylinositol 3- 79.2 34 0.0012 34.1 14.0 115 600-714 9-136 (170)
170 3q8t_A Beclin-1; autophagy, AT 78.9 37 0.0013 30.6 14.1 79 767-845 9-87 (96)
171 1ixz_A ATP-dependent metallopr 78.8 0.41 1.4E-05 51.1 0.0 50 141-191 12-66 (254)
172 2v4h_A NF-kappa-B essential mo 78.5 16 0.00055 33.5 10.3 76 752-831 28-103 (110)
173 3hnw_A Uncharacterized protein 78.1 14 0.00047 35.8 10.6 43 795-837 87-129 (138)
174 2kjq_A DNAA-related protein; s 78.0 1.1 3.7E-05 44.0 2.9 18 175-192 37-54 (149)
175 2ocy_A RAB guanine nucleotide 78.0 55 0.0019 32.1 20.2 43 796-838 50-92 (154)
176 2p65_A Hypothetical protein PF 77.8 0.77 2.6E-05 45.6 1.7 30 163-192 32-61 (187)
177 2k48_A Nucleoprotein; viral pr 77.8 17 0.00058 32.9 10.0 66 600-665 34-100 (107)
178 3mq7_A Bone marrow stromal ant 77.6 45 0.0015 30.8 14.1 19 722-740 20-38 (121)
179 2i1j_A Moesin; FERM, coiled-co 77.5 4.7 0.00016 48.6 8.7 25 678-702 332-356 (575)
180 3u1c_A Tropomyosin alpha-1 cha 76.9 44 0.0015 30.4 13.2 68 766-833 27-94 (101)
181 2q6q_A Spindle POLE BODY compo 76.6 14 0.00048 30.7 8.4 61 682-746 4-64 (74)
182 4b4t_I 26S protease regulatory 76.5 5 0.00017 46.4 8.2 112 104-215 128-274 (437)
183 3b9p_A CG5977-PA, isoform A; A 76.2 0.8 2.7E-05 50.0 1.4 51 141-191 17-71 (297)
184 1d2n_A N-ethylmaleimide-sensit 76.1 1.1 3.9E-05 48.1 2.6 21 171-191 61-81 (272)
185 3swk_A Vimentin; cytoskeleton, 75.5 32 0.0011 30.4 11.4 80 602-698 1-80 (86)
186 1deq_A Fibrinogen (alpha chain 75.2 38 0.0013 37.8 14.1 80 607-699 59-138 (390)
187 3d8b_A Fidgetin-like protein 1 75.1 0.8 2.7E-05 51.8 1.1 51 141-191 80-134 (357)
188 2ko5_A Ring finger protein Z; 74.8 0.96 3.3E-05 40.3 1.3 47 1050-1098 27-77 (99)
189 2i1j_A Moesin; FERM, coiled-co 74.8 4 0.00014 49.2 7.1 17 641-657 301-317 (575)
190 2b9c_A Striated-muscle alpha t 74.6 37 0.0013 33.1 12.7 110 627-740 8-121 (147)
191 2ic6_A Nucleocapsid protein; h 74.2 16 0.00054 31.5 8.5 65 601-665 5-70 (78)
192 1ic2_A Tropomyosin alpha chain 74.1 37 0.0013 29.5 11.3 23 760-782 4-26 (81)
193 2zet_C Melanophilin; complex, 73.6 1.6 5.5E-05 43.2 2.7 66 1024-1090 41-116 (153)
194 1iy2_A ATP-dependent metallopr 73.5 0.61 2.1E-05 50.6 -0.4 50 141-191 36-90 (278)
195 3jsv_C NF-kappa-B essential mo 72.9 14 0.00049 32.9 8.2 75 755-833 9-83 (94)
196 2z4s_A Chromosomal replication 72.8 1.6 5.3E-05 51.0 2.8 49 140-192 100-148 (440)
197 2eqb_B RAB guanine nucleotide 72.8 54 0.0019 29.5 13.3 14 822-835 80-93 (97)
198 2v1u_A Cell division control p 72.5 0.9 3.1E-05 51.1 0.7 22 171-192 41-62 (387)
199 3ol1_A Vimentin; structural ge 71.8 66 0.0023 30.1 14.1 34 679-712 18-51 (119)
200 3i00_A HIP-I, huntingtin-inter 71.7 7.8 0.00027 36.6 6.7 56 599-657 9-64 (120)
201 3u59_A Tropomyosin beta chain; 71.5 59 0.002 29.4 13.0 66 767-832 28-93 (101)
202 2ic9_A Nucleocapsid protein; h 71.3 19 0.00064 32.2 8.6 66 600-665 4-70 (96)
203 2qz4_A Paraplegin; AAA+, SPG7, 71.1 0.7 2.4E-05 49.2 -0.7 19 173-191 38-56 (262)
204 1xwi_A SKD1 protein; VPS4B, AA 71.0 1.1 3.6E-05 50.0 0.8 50 142-191 9-62 (322)
205 1m1j_B Fibrinogen beta chain; 70.6 39 0.0013 39.1 13.7 27 678-704 132-158 (464)
206 1qde_A EIF4A, translation init 70.5 1.7 5.8E-05 45.0 2.2 24 165-190 44-67 (224)
207 1vec_A ATP-dependent RNA helic 70.1 1.9 6.6E-05 43.9 2.5 25 165-191 33-57 (206)
208 3cvf_A Homer-3, homer protein 70.0 25 0.00087 30.5 9.0 34 636-669 9-42 (79)
209 1gk4_A Vimentin; intermediate 69.9 54 0.0019 28.7 11.5 43 763-805 34-76 (84)
210 2oto_A M protein; helical coil 69.9 86 0.0029 30.6 15.2 38 760-797 27-64 (155)
211 3syl_A Protein CBBX; photosynt 69.5 1.5 5E-05 48.0 1.5 20 172-191 65-84 (309)
212 1lv7_A FTSH; alpha/beta domain 69.4 1 3.4E-05 48.1 0.1 50 141-191 8-62 (257)
213 3s9g_A Protein hexim1; cyclin 69.1 38 0.0013 30.3 10.0 40 794-833 48-87 (104)
214 2b9c_A Striated-muscle alpha t 69.0 88 0.003 30.4 13.9 35 811-845 87-121 (147)
215 2gxq_A Heat resistant RNA depe 68.6 2 6.9E-05 43.7 2.3 23 166-190 32-54 (207)
216 3s4r_A Vimentin; alpha-helix, 68.4 38 0.0013 30.4 10.3 36 809-844 54-89 (93)
217 1fnn_A CDC6P, cell division co 68.1 2.9 9.9E-05 47.0 3.7 27 165-191 32-61 (389)
218 2chg_A Replication factor C sm 67.9 2.1 7.2E-05 43.5 2.2 22 171-192 35-56 (226)
219 3i00_A HIP-I, huntingtin-inter 67.8 46 0.0016 31.3 11.2 58 754-814 14-71 (120)
220 1ic2_A Tropomyosin alpha chain 67.5 44 0.0015 29.0 10.3 35 680-714 40-74 (81)
221 2e7s_A RAB guanine nucleotide 67.2 5.2 0.00018 38.4 4.5 11 730-740 120-130 (135)
222 1p9r_A General secretion pathw 67.0 2.3 7.7E-05 49.3 2.5 29 164-192 157-185 (418)
223 1sxj_C Activator 1 40 kDa subu 66.9 2.4 8.3E-05 47.2 2.7 42 143-192 23-64 (340)
224 1deq_A Fibrinogen (alpha chain 66.8 1.1E+02 0.0037 34.2 15.4 108 707-838 54-161 (390)
225 3mq7_A Bone marrow stromal ant 66.8 70 0.0024 29.6 11.5 37 697-737 73-109 (121)
226 2x8a_A Nuclear valosin-contain 66.6 1 3.5E-05 48.9 -0.5 50 142-191 7-61 (274)
227 4b4t_H 26S protease regulatory 66.2 3.1 0.0001 48.6 3.3 74 142-215 206-301 (467)
228 2w83_C C-JUN-amino-terminal ki 66.1 34 0.0012 29.3 8.7 46 803-848 22-67 (77)
229 3a7p_A Autophagy protein 16; c 65.8 1E+02 0.0035 30.0 13.6 37 678-714 100-136 (152)
230 3uk6_A RUVB-like 2; hexameric 65.8 2.6 8.7E-05 47.3 2.6 45 142-191 41-87 (368)
231 2qp9_X Vacuolar protein sortin 65.8 1.7 6E-05 49.0 1.2 51 141-191 47-101 (355)
232 3eie_A Vacuolar protein sortin 65.8 1.5 5.2E-05 48.6 0.6 50 142-191 15-68 (322)
233 3dkp_A Probable ATP-dependent 65.2 2.5 8.7E-05 44.4 2.3 25 165-191 59-83 (245)
234 3bor_A Human initiation factor 65.0 1.6 5.6E-05 45.9 0.7 25 165-191 60-84 (237)
235 4h22_A Leucine-rich repeat fli 64.8 53 0.0018 29.9 10.2 21 813-833 4-24 (103)
236 3jvv_A Twitching mobility prot 64.4 2.5 8.4E-05 47.9 2.1 28 165-192 114-141 (356)
237 3cve_A Homer protein homolog 1 64.3 43 0.0015 28.6 9.1 29 640-668 7-35 (72)
238 3ly5_A ATP-dependent RNA helic 64.2 2.2 7.5E-05 45.8 1.5 26 164-191 83-108 (262)
239 3nmd_A CGMP dependent protein 64.2 19 0.00064 30.7 6.8 16 642-657 21-36 (72)
240 2qby_B CDC6 homolog 3, cell di 63.9 3.5 0.00012 46.3 3.3 46 141-191 16-62 (384)
241 3jsv_C NF-kappa-B essential mo 63.6 48 0.0016 29.6 9.6 9 706-714 6-14 (94)
242 3hu3_A Transitional endoplasmi 63.4 2.6 8.8E-05 49.9 2.1 50 142-191 201-255 (489)
243 2pl3_A Probable ATP-dependent 62.7 3 0.0001 43.5 2.3 25 165-191 55-79 (236)
244 2lw1_A ABC transporter ATP-bin 62.5 36 0.0012 30.1 8.9 61 640-707 22-82 (89)
245 1wt6_A Myotonin-protein kinase 62.4 56 0.0019 28.3 9.5 44 795-838 29-72 (81)
246 1t6n_A Probable ATP-dependent 62.3 3 0.0001 43.0 2.1 25 165-191 44-68 (220)
247 2zan_A Vacuolar protein sortin 62.0 1.8 6.3E-05 50.4 0.4 51 141-191 130-184 (444)
248 3oja_A Leucine-rich immune mol 61.4 98 0.0033 35.9 15.3 11 319-329 238-248 (487)
249 1u0j_A DNA replication protein 61.4 3.4 0.00012 44.6 2.4 30 163-192 90-122 (267)
250 3s84_A Apolipoprotein A-IV; fo 60.9 1.8E+02 0.0062 31.2 28.8 37 678-714 63-100 (273)
251 1hqc_A RUVB; extended AAA-ATPa 60.9 2.3 8E-05 46.6 1.0 45 142-191 9-55 (324)
252 3b6e_A Interferon-induced heli 60.6 1.8 6.1E-05 44.3 -0.0 24 167-192 43-66 (216)
253 2qyw_A Vesicle transport throu 60.3 53 0.0018 29.9 9.9 95 596-703 4-100 (102)
254 3bas_A Myosin heavy chain, str 60.0 62 0.0021 28.6 10.0 12 859-870 75-86 (89)
255 1deb_A APC protein, adenomatou 60.0 42 0.0014 26.2 7.4 30 602-631 4-33 (54)
256 3mq9_A Bone marrow stromal ant 59.8 1.2E+02 0.004 35.0 15.6 12 265-276 141-152 (471)
257 3fmo_B ATP-dependent RNA helic 59.6 3.5 0.00012 45.2 2.2 27 165-191 122-148 (300)
258 1x8y_A Lamin A/C; structural p 59.4 46 0.0016 29.3 9.0 44 763-806 36-79 (86)
259 3mq9_A Bone marrow stromal ant 59.4 1.6E+02 0.0054 34.0 16.5 16 760-775 455-470 (471)
260 3iuy_A Probable ATP-dependent 59.3 3.7 0.00013 42.6 2.2 24 166-191 51-74 (228)
261 2c9o_A RUVB-like 1; hexameric 59.2 4.2 0.00014 47.5 2.8 46 141-191 33-80 (456)
262 1iqp_A RFCS; clamp loader, ext 59.2 4 0.00014 44.6 2.5 22 171-192 43-64 (327)
263 1wrb_A DJVLGB; RNA helicase, D 59.0 3.8 0.00013 43.3 2.2 24 166-191 54-77 (253)
264 3pfi_A Holliday junction ATP-d 58.8 2.9 9.9E-05 46.3 1.3 44 143-191 27-72 (338)
265 3nw0_A Non-structural maintena 58.5 4.8 0.00016 42.8 2.9 46 1051-1097 180-232 (238)
266 2qby_A CDC6 homolog 1, cell di 58.5 2.7 9.1E-05 47.1 0.9 20 172-191 43-62 (386)
267 2eyu_A Twitching motility prot 58.1 3.7 0.00013 44.2 2.0 20 173-192 24-43 (261)
268 3n70_A Transport activator; si 58.0 3.8 0.00013 39.6 1.8 20 172-191 22-41 (145)
269 1t2k_D Cyclic-AMP-dependent tr 58.0 76 0.0026 25.9 9.6 34 812-845 23-56 (61)
270 3fe2_A Probable ATP-dependent 57.7 3.9 0.00013 43.0 2.0 24 166-191 60-83 (242)
271 3hhm_B NISH2 P85alpha; PI3KCA, 57.7 50 0.0017 37.3 11.2 62 600-661 118-182 (373)
272 1tue_A Replication protein E1; 57.7 2.9 9.8E-05 43.5 0.9 27 166-192 48-76 (212)
273 3llm_A ATP-dependent RNA helic 57.6 3.6 0.00012 43.2 1.8 27 163-191 67-93 (235)
274 4fi5_A Nucleoprotein; structur 57.4 45 0.0015 30.6 8.5 66 602-667 23-89 (113)
275 3co5_A Putative two-component 57.2 4.2 0.00014 39.2 2.0 20 173-192 26-45 (143)
276 1go4_E MAD1 (mitotic arrest de 56.9 43 0.0015 30.4 8.3 26 758-783 71-96 (100)
277 2oxc_A Probable ATP-dependent 56.8 4.4 0.00015 42.3 2.2 23 166-190 55-77 (230)
278 3eiq_A Eukaryotic initiation f 56.6 4.4 0.00015 45.8 2.4 25 165-191 70-94 (414)
279 1go4_E MAD1 (mitotic arrest de 56.4 12 0.00042 33.9 4.7 35 599-633 10-44 (100)
280 3ber_A Probable ATP-dependent 56.1 4.6 0.00016 42.8 2.3 24 166-191 74-97 (249)
281 2oqq_A Transcription factor HY 56.0 39 0.0013 25.4 6.4 32 802-833 8-39 (42)
282 1gmj_A ATPase inhibitor; coile 55.6 59 0.002 28.5 8.6 41 785-825 39-79 (84)
283 1in4_A RUVB, holliday junction 55.6 5.3 0.00018 44.4 2.8 17 175-191 52-68 (334)
284 1sxj_D Activator 1 41 kDa subu 54.7 4.1 0.00014 45.2 1.6 42 143-192 35-76 (353)
285 2e7s_A RAB guanine nucleotide 54.3 42 0.0014 32.1 8.2 26 761-788 66-91 (135)
286 3v86_A De novo design helix; c 53.9 24 0.00081 23.1 4.3 24 800-823 3-26 (27)
287 3pxg_A Negative regulator of g 53.8 7 0.00024 45.8 3.5 42 143-192 178-219 (468)
288 1q0u_A Bstdead; DEAD protein, 53.8 3.3 0.00011 42.7 0.6 24 166-191 35-58 (219)
289 2jun_A Midline-1; B-BOX, TRIM, 53.2 3.5 0.00012 37.3 0.7 29 1052-1081 4-35 (101)
290 2wt7_A Proto-oncogene protein 52.9 95 0.0033 25.5 9.6 34 812-845 24-57 (63)
291 2fiy_A Protein FDHE homolog; F 52.8 4.3 0.00015 44.8 1.4 42 1050-1091 181-231 (309)
292 1f5n_A Interferon-induced guan 52.4 3.6E+02 0.012 32.2 18.2 149 615-819 431-582 (592)
293 1njg_A DNA polymerase III subu 52.4 3.6 0.00012 42.2 0.6 17 175-191 46-62 (250)
294 3fmp_B ATP-dependent RNA helic 52.3 5.5 0.00019 46.5 2.3 26 165-190 122-147 (479)
295 1m1j_C Fibrinogen gamma chain; 51.7 2.2E+02 0.0076 32.4 15.3 22 604-625 27-48 (409)
296 1ofh_A ATP-dependent HSL prote 51.5 5.5 0.00019 43.1 2.0 18 174-191 50-67 (310)
297 3cvf_A Homer-3, homer protein 51.2 87 0.003 27.2 9.0 50 678-731 24-73 (79)
298 2fz4_A DNA repair protein RAD2 51.1 5.7 0.0002 41.9 2.0 24 167-192 103-126 (237)
299 1w5s_A Origin recognition comp 51.0 7.5 0.00026 43.9 3.1 25 167-191 40-69 (412)
300 3fht_A ATP-dependent RNA helic 50.9 6 0.00021 44.6 2.3 27 165-191 55-81 (412)
301 3pey_A ATP-dependent RNA helic 50.5 5.8 0.0002 44.3 2.1 27 165-191 35-61 (395)
302 3pvs_A Replication-associated 50.4 7 0.00024 45.5 2.8 44 143-191 24-67 (447)
303 2ce7_A Cell division protein F 50.1 4.2 0.00014 47.8 0.8 50 141-191 12-66 (476)
304 2j0s_A ATP-dependent RNA helic 50.0 5.9 0.0002 44.9 2.0 24 166-191 68-91 (410)
305 3trt_A Vimentin; cytoskeleton, 49.7 1.1E+02 0.0038 26.0 9.7 62 676-741 11-77 (77)
306 1m1j_B Fibrinogen beta chain; 49.5 3.1E+02 0.01 31.8 16.1 51 603-657 88-138 (464)
307 4fcw_A Chaperone protein CLPB; 49.4 5.1 0.00018 43.5 1.3 17 175-191 48-64 (311)
308 2oap_1 GSPE-2, type II secreti 49.1 6.3 0.00022 46.8 2.1 21 170-192 258-278 (511)
309 1gvn_B Zeta; postsegregational 49.1 9.8 0.00033 41.4 3.5 31 161-191 15-50 (287)
310 2b5u_A Colicin E3; high resolu 48.9 1.2E+02 0.0042 34.9 12.2 23 902-924 404-426 (551)
311 2ewv_A Twitching motility prot 48.6 4.9 0.00017 45.6 1.0 21 172-192 134-154 (372)
312 3s9g_A Protein hexim1; cyclin 48.2 1.5E+02 0.005 26.6 10.0 58 788-845 35-92 (104)
313 1l8d_A DNA double-strand break 47.9 1.6E+02 0.0055 26.7 12.3 25 809-833 69-93 (112)
314 2r44_A Uncharacterized protein 47.8 4.8 0.00016 44.5 0.8 18 175-192 47-64 (331)
315 2k48_A Nucleoprotein; viral pr 47.8 57 0.0019 29.6 7.5 48 640-692 53-100 (107)
316 1s2m_A Putative ATP-dependent 47.6 6.5 0.00022 44.3 1.8 24 166-191 52-75 (400)
317 2xnx_M M protein, M1-BC1; cell 47.5 83 0.0028 30.3 9.0 18 896-913 121-138 (146)
318 2z0m_A 337AA long hypothetical 47.3 7 0.00024 42.6 2.0 24 166-191 25-48 (337)
319 2w6a_A ARF GTPase-activating p 46.9 1E+02 0.0035 24.9 8.0 36 796-831 26-61 (63)
320 2cs3_A Protein C14ORF4, MY039 46.5 4 0.00014 35.2 -0.1 30 1050-1080 14-47 (93)
321 3u61_B DNA polymerase accessor 46.4 6.6 0.00023 43.1 1.6 19 174-192 48-66 (324)
322 2dhr_A FTSH; AAA+ protein, hex 45.9 3.7 0.00012 48.6 -0.6 50 141-191 27-81 (499)
323 2oto_A M protein; helical coil 45.6 2.2E+02 0.0076 27.6 19.5 36 803-838 42-77 (155)
324 4b3f_X DNA-binding protein smu 44.8 7.8 0.00027 47.3 2.1 27 165-192 197-223 (646)
325 4fla_A Regulation of nuclear P 44.7 1.1E+02 0.0036 30.1 9.7 13 645-657 91-103 (152)
326 2i4i_A ATP-dependent RNA helic 44.6 8.1 0.00028 43.7 2.1 24 166-191 46-69 (417)
327 3h1t_A Type I site-specific re 44.4 7.9 0.00027 46.5 2.0 28 164-192 189-216 (590)
328 1jcd_A Major outer membrane li 44.3 92 0.0031 24.8 7.4 16 798-813 33-48 (52)
329 1zbd_B Rabphilin-3A; G protein 44.2 4.7 0.00016 38.9 -0.0 49 1025-1080 35-88 (134)
330 3qne_A Seryl-tRNA synthetase, 44.1 49 0.0017 38.6 8.5 70 755-835 33-102 (485)
331 1sxj_E Activator 1 40 kDa subu 44.0 6.7 0.00023 43.6 1.2 16 177-192 39-54 (354)
332 2chq_A Replication factor C sm 44.0 6.2 0.00021 42.8 0.9 22 171-192 35-56 (319)
333 3iv1_A Tumor susceptibility ge 43.7 1.5E+02 0.0053 25.5 9.3 50 767-816 16-65 (78)
334 1ojl_A Transcriptional regulat 43.2 7.9 0.00027 42.5 1.6 20 172-191 23-42 (304)
335 3fho_A ATP-dependent RNA helic 43.0 9.3 0.00032 45.1 2.3 25 167-191 151-175 (508)
336 3m91_A Proteasome-associated A 42.6 75 0.0026 25.2 6.6 29 816-844 14-42 (51)
337 3qh9_A Liprin-beta-2; coiled-c 42.0 1.7E+02 0.0059 25.3 9.5 20 638-657 31-50 (81)
338 1qvr_A CLPB protein; coiled co 41.6 7.9 0.00027 49.0 1.5 42 143-192 168-209 (854)
339 3hws_A ATP-dependent CLP prote 41.6 8.1 0.00028 43.4 1.4 18 174-191 51-68 (363)
340 1n0w_A DNA repair protein RAD5 41.5 9.8 0.00033 39.5 1.9 31 162-192 9-42 (243)
341 3oiy_A Reverse gyrase helicase 41.1 9.2 0.00032 43.5 1.8 24 165-190 29-52 (414)
342 2xv5_A Lamin-A/C; structural p 41.1 78 0.0027 27.1 7.1 52 755-806 5-56 (74)
343 1rif_A DAR protein, DNA helica 41.0 7.3 0.00025 41.9 0.9 24 167-192 123-146 (282)
344 1ci6_A Transcription factor AT 40.9 66 0.0023 26.5 6.5 11 793-803 47-57 (63)
345 3qh9_A Liprin-beta-2; coiled-c 40.8 1.8E+02 0.0061 25.2 9.3 54 773-826 23-76 (81)
346 1xti_A Probable ATP-dependent 40.7 10 0.00034 42.4 2.0 25 165-191 38-62 (391)
347 4emc_A Monopolin complex subun 40.6 36 0.0012 34.3 5.6 37 809-845 11-47 (190)
348 1jnm_A Proto-oncogene C-JUN; B 40.5 40 0.0014 27.7 5.1 34 812-845 23-56 (62)
349 1sxj_B Activator 1 37 kDa subu 40.4 11 0.00037 41.0 2.1 22 171-192 39-60 (323)
350 1jr3_A DNA polymerase III subu 40.2 14 0.00049 41.0 3.2 18 174-191 38-55 (373)
351 1wle_A Seryl-tRNA synthetase; 40.1 1.3E+02 0.0044 35.4 11.3 78 755-835 70-147 (501)
352 3htk_A Structural maintenance 40.0 1.4E+02 0.0047 24.0 8.4 50 684-737 8-57 (60)
353 1l8d_A DNA double-strand break 39.7 2.2E+02 0.0074 25.8 12.7 14 644-657 28-41 (112)
354 1w36_D RECD, exodeoxyribonucle 39.5 10 0.00035 46.0 1.9 19 174-192 164-182 (608)
355 3iv1_A Tumor susceptibility ge 39.5 1.8E+02 0.0063 25.0 9.1 55 763-817 19-73 (78)
356 3i5x_A ATP-dependent RNA helic 39.3 13 0.00043 44.3 2.7 27 165-191 102-128 (563)
357 2v1x_A ATP-dependent DNA helic 39.2 14 0.00048 44.6 3.0 25 165-191 52-76 (591)
358 2yy0_A C-MYC-binding protein; 39.2 43 0.0015 26.8 4.8 30 805-834 20-49 (53)
359 3cf2_A TER ATPase, transitiona 38.5 15 0.0005 46.0 3.1 51 141-191 200-255 (806)
360 3pxi_A Negative regulator of g 38.2 17 0.00059 45.1 3.7 42 143-192 178-219 (758)
361 1m1j_A Fibrinogen alpha subuni 38.1 4.6E+02 0.016 30.0 14.6 103 721-840 59-161 (491)
362 2db3_A ATP-dependent RNA helic 38.1 12 0.0004 43.2 2.0 24 166-191 87-110 (434)
363 1zxa_A CGMP-dependent protein 38.0 36 0.0012 28.6 4.3 42 691-736 14-55 (67)
364 1hv8_A Putative ATP-dependent 37.9 11 0.00039 41.4 1.8 25 166-191 37-61 (367)
365 2dq0_A Seryl-tRNA synthetase; 37.8 58 0.002 37.8 7.9 70 755-835 31-100 (455)
366 3b85_A Phosphate starvation-in 37.7 14 0.00047 38.2 2.3 26 164-191 14-39 (208)
367 4h22_A Leucine-rich repeat fli 37.6 2.4E+02 0.0081 25.6 10.1 13 826-838 66-78 (103)
368 1fuu_A Yeast initiation factor 37.6 7.5 0.00026 43.5 0.3 25 165-191 51-75 (394)
369 1dh3_A Transcription factor CR 37.3 1.2E+02 0.004 24.4 7.2 29 812-840 23-51 (55)
370 2p5t_B PEZT; postsegregational 37.3 17 0.00057 38.5 3.0 17 175-191 33-49 (253)
371 3m48_A General control protein 36.9 49 0.0017 23.6 4.1 25 815-839 4-28 (33)
372 2cvh_A DNA repair and recombin 36.8 13 0.00045 37.8 2.0 30 163-192 6-38 (220)
373 1um8_A ATP-dependent CLP prote 36.7 11 0.00039 42.3 1.6 18 174-191 72-89 (376)
374 3cve_A Homer protein homolog 1 36.4 2E+02 0.0068 24.5 10.8 50 678-731 18-67 (72)
375 4a2p_A RIG-I, retinoic acid in 36.3 14 0.00046 43.6 2.3 25 165-191 15-39 (556)
376 3abh_A Pacsin2, protein kinase 36.2 4.3E+02 0.015 28.3 18.3 43 596-638 24-69 (312)
377 4gkw_A Spindle assembly abnorm 36.1 2.8E+02 0.0095 26.0 21.5 37 678-714 43-79 (167)
378 3pwf_A Rubrerythrin; non heme 36.0 33 0.0011 34.3 4.7 15 1083-1097 154-168 (170)
379 1ci6_A Transcription factor AT 35.9 1.3E+02 0.0045 24.7 7.6 16 819-834 31-46 (63)
380 3upu_A ATP-dependent DNA helic 35.8 15 0.00052 42.6 2.6 37 151-192 27-63 (459)
381 2w0m_A SSO2452; RECA, SSPF, un 35.8 12 0.00043 38.2 1.6 29 164-192 10-41 (235)
382 4etp_A Kinesin-like protein KA 35.7 80 0.0027 36.0 8.5 55 675-733 4-58 (403)
383 1qvr_A CLPB protein; coiled co 35.6 10 0.00035 48.0 1.0 17 175-191 589-605 (854)
384 2gk6_A Regulator of nonsense t 35.3 13 0.00045 45.1 2.0 25 166-192 189-213 (624)
385 3m91_A Proteasome-associated A 35.3 1.2E+02 0.0042 24.0 6.8 26 689-714 10-35 (51)
386 1c4o_A DNA nucleotide excision 35.2 20 0.00067 44.0 3.5 83 142-230 2-92 (664)
387 1wle_A Seryl-tRNA synthetase; 34.9 1.7E+02 0.0057 34.4 11.2 28 814-841 119-146 (501)
388 3mov_A Lamin-B1; LMNB1, B-type 34.8 1.8E+02 0.0062 26.0 8.9 35 768-802 50-84 (95)
389 2pms_C Pneumococcal surface pr 34.7 2.4E+02 0.0081 26.6 9.8 21 721-741 14-34 (125)
390 2qag_C Septin-7; cell cycle, c 34.6 10 0.00034 43.8 0.7 23 169-191 26-48 (418)
391 3ok8_A Brain-specific angiogen 34.5 4.1E+02 0.014 27.5 14.1 46 787-832 102-147 (222)
392 4emc_A Monopolin complex subun 34.5 70 0.0024 32.2 6.6 42 801-842 17-58 (190)
393 3c8u_A Fructokinase; YP_612366 34.4 17 0.00059 37.0 2.4 29 163-191 9-39 (208)
394 1m1j_C Fibrinogen gamma chain; 34.3 2.4E+02 0.0081 32.2 11.9 11 702-712 105-115 (409)
395 3nbx_X ATPase RAVA; AAA+ ATPas 34.2 15 0.0005 43.5 2.0 25 165-191 34-58 (500)
396 1t6f_A Geminin; coiled-coil, c 34.1 98 0.0033 22.4 5.3 28 804-831 7-34 (37)
397 3tbk_A RIG-I helicase domain; 34.1 15 0.00053 43.0 2.3 24 166-191 13-36 (555)
398 4gp7_A Metallophosphoesterase; 34.0 10 0.00036 37.5 0.7 17 176-192 11-27 (171)
399 3b9q_A Chloroplast SRP recepto 33.7 19 0.00064 39.5 2.7 16 176-191 102-117 (302)
400 4a74_A DNA repair and recombin 33.7 16 0.00056 37.3 2.1 29 163-191 11-42 (231)
401 2fwr_A DNA repair protein RAD2 33.6 15 0.00051 42.5 2.0 23 167-191 103-125 (472)
402 4dci_A Uncharacterized protein 33.6 2.4E+02 0.0081 27.5 10.1 63 678-740 33-104 (150)
403 1rz3_A Hypothetical protein rb 33.4 19 0.00066 36.5 2.6 18 174-191 22-39 (201)
404 3plt_A Sphingolipid long chain 33.3 3.7E+02 0.013 28.0 12.2 94 608-727 62-164 (234)
405 2xnx_M M protein, M1-BC1; cell 33.3 40 0.0014 32.5 4.4 46 753-798 78-123 (146)
406 2lw1_A ABC transporter ATP-bin 33.2 1.1E+02 0.0037 26.9 7.2 28 756-783 57-84 (89)
407 3sqw_A ATP-dependent RNA helic 32.9 18 0.00063 43.2 2.7 27 165-191 51-77 (579)
408 2qnr_A Septin-2, protein NEDD5 32.9 11 0.00037 41.3 0.6 24 168-191 12-35 (301)
409 3tau_A Guanylate kinase, GMP k 32.9 13 0.00043 38.2 1.1 17 175-191 9-25 (208)
410 3lw7_A Adenylate kinase relate 32.8 12 0.0004 36.3 0.7 16 176-191 3-18 (179)
411 2r8r_A Sensor protein; KDPD, P 32.8 10 0.00036 39.8 0.4 19 174-192 6-24 (228)
412 3ra3_B P2F; coiled coil domain 32.7 43 0.0015 22.1 3.1 26 820-845 2-27 (28)
413 1ypw_A Transitional endoplasmi 32.7 16 0.00055 45.8 2.2 52 140-191 199-255 (806)
414 2ic6_A Nucleocapsid protein; h 32.6 1.4E+02 0.0049 25.7 7.3 22 693-714 50-71 (78)
415 1kd8_B GABH BLL, GCN4 acid bas 32.3 98 0.0033 22.5 5.1 29 922-950 5-33 (36)
416 1m1j_A Fibrinogen alpha subuni 32.3 6.2E+02 0.021 28.9 16.6 87 605-704 55-141 (491)
417 4gl2_A Interferon-induced heli 32.1 17 0.00057 44.5 2.1 25 165-191 15-39 (699)
418 1ses_A Seryl-tRNA synthetase; 32.0 1.4E+02 0.0047 34.2 9.7 69 754-835 27-95 (421)
419 2wq1_A General control protein 31.7 81 0.0028 22.5 4.5 27 922-948 4-30 (33)
420 1sxj_A Activator 1 95 kDa subu 31.6 16 0.00056 43.1 1.9 19 174-192 77-95 (516)
421 4ag6_A VIRB4 ATPase, type IV s 31.6 11 0.00038 42.7 0.5 18 175-192 36-53 (392)
422 1gk6_A Vimentin; intermediate 31.5 1.9E+02 0.0065 23.4 7.7 47 760-806 5-51 (59)
423 3c3g_A Alpha/beta peptide with 31.4 82 0.0028 22.4 4.5 27 922-948 4-30 (33)
424 2dgc_A Protein (GCN4); basic d 31.2 67 0.0023 26.6 5.0 30 812-841 31-60 (63)
425 3sop_A Neuronal-specific septi 31.1 13 0.00043 40.2 0.7 19 173-191 1-19 (270)
426 1lq7_A Alpha3W; three helix bu 31.0 1E+02 0.0036 24.2 5.6 16 724-739 6-21 (67)
427 3v86_A De novo design helix; c 31.0 75 0.0026 20.8 3.9 23 605-627 4-26 (27)
428 3htk_A Structural maintenance 30.8 2.1E+02 0.007 22.9 8.5 30 816-845 24-53 (60)
429 1hjb_A Ccaat/enhancer binding 30.7 1.2E+02 0.0042 26.7 6.9 31 815-845 40-70 (87)
430 2oxj_A Hybrid alpha/beta pepti 30.7 71 0.0024 22.9 4.1 26 815-840 5-30 (34)
431 3tr0_A Guanylate kinase, GMP k 30.6 13 0.00044 37.5 0.7 16 176-191 9-24 (205)
432 1kgd_A CASK, peripheral plasma 30.5 13 0.00044 37.1 0.6 16 176-191 7-22 (180)
433 1wp9_A ATP-dependent RNA helic 30.4 17 0.0006 41.3 1.8 24 166-192 18-41 (494)
434 3c3g_A Alpha/beta peptide with 30.3 94 0.0032 22.1 4.7 26 815-840 4-29 (33)
435 3lfu_A DNA helicase II; SF1 he 30.1 15 0.00052 44.5 1.3 21 172-192 20-40 (647)
436 2dr3_A UPF0273 protein PH0284; 30.1 17 0.0006 37.5 1.6 27 165-191 11-40 (247)
437 3iox_A AGI/II, PA; alpha helix 30.1 7E+02 0.024 28.9 15.4 19 760-778 32-50 (497)
438 1e9r_A Conjugal transfer prote 29.9 12 0.00041 43.1 0.3 18 174-191 53-70 (437)
439 3a00_A Guanylate kinase, GMP k 29.7 13 0.00044 37.3 0.5 16 176-191 3-18 (186)
440 2dgc_A Protein (GCN4); basic d 29.6 61 0.0021 26.8 4.5 33 600-632 29-61 (63)
441 3iox_A AGI/II, PA; alpha helix 29.6 7.1E+02 0.024 28.8 15.2 29 682-710 35-63 (497)
442 3e70_C DPA, signal recognition 29.5 26 0.00089 38.9 3.0 17 175-191 130-146 (328)
443 1t2k_D Cyclic-AMP-dependent tr 29.4 1.7E+02 0.0059 23.7 7.2 27 804-830 29-55 (61)
444 2ykg_A Probable ATP-dependent 29.3 20 0.00069 43.7 2.2 24 166-191 22-45 (696)
445 1gk7_A Vimentin; intermediate 29.3 1.4E+02 0.0048 22.3 5.9 33 799-835 5-37 (39)
446 3m9b_A Proteasome-associated A 29.2 43 0.0015 35.4 4.3 69 641-734 25-96 (251)
447 3e1s_A Exodeoxyribonuclease V, 28.8 20 0.00068 43.1 2.0 26 165-192 197-222 (574)
448 1z60_A TFIIH basal transcripti 28.6 23 0.00079 29.0 1.7 35 1053-1088 17-58 (59)
449 1gu4_A CAAT/enhancer binding p 28.6 1.3E+02 0.0045 26.0 6.5 32 814-845 39-70 (78)
450 2jne_A Hypothetical protein YF 28.6 12 0.00042 33.5 0.1 38 1052-1094 33-73 (101)
451 2jlq_A Serine protease subunit 28.6 16 0.00056 42.3 1.1 24 166-190 12-35 (451)
452 2xzl_A ATP-dependent helicase 28.6 19 0.00066 45.0 1.9 25 166-192 369-393 (802)
453 2b8t_A Thymidine kinase; deoxy 28.5 12 0.00041 39.2 -0.0 19 175-193 13-31 (223)
454 1lvg_A Guanylate kinase, GMP k 28.5 13 0.00046 37.7 0.4 16 176-191 6-21 (198)
455 3c3f_A Alpha/beta peptide with 28.5 98 0.0033 22.1 4.5 27 922-948 5-31 (34)
456 2wjy_A Regulator of nonsense t 28.4 20 0.00069 44.9 2.0 25 166-192 365-389 (800)
457 4fi5_A Nucleoprotein; structur 28.4 1.5E+02 0.0052 27.2 7.1 65 642-714 24-88 (113)
458 2orw_A Thymidine kinase; TMTK, 28.3 11 0.00036 38.2 -0.5 17 176-192 5-21 (184)
459 3pxi_A Negative regulator of g 28.3 23 0.00079 44.0 2.5 16 176-191 523-538 (758)
460 1ye8_A Protein THEP1, hypothet 28.1 14 0.00048 37.1 0.4 15 177-191 3-17 (178)
461 1dh3_A Transcription factor CR 28.1 75 0.0026 25.5 4.6 33 601-633 22-54 (55)
462 1zp6_A Hypothetical protein AT 28.1 15 0.00051 36.6 0.6 17 175-191 10-26 (191)
463 2og2_A Putative signal recogni 28.0 27 0.00094 39.3 2.8 16 176-191 159-174 (359)
464 2xzr_A Immunoglobulin-binding 27.9 3.2E+02 0.011 24.2 11.7 20 645-664 18-37 (114)
465 1r6b_X CLPA protein; AAA+, N-t 27.9 23 0.0008 43.9 2.5 28 165-192 198-225 (758)
466 3trf_A Shikimate kinase, SK; a 27.4 17 0.00058 36.0 0.9 15 176-190 7-21 (185)
467 1rj9_A FTSY, signal recognitio 27.3 17 0.00059 39.9 1.0 17 175-191 103-119 (304)
468 1ly1_A Polynucleotide kinase; 27.2 17 0.00059 35.5 0.9 15 176-190 4-18 (181)
469 1uii_A Geminin; human, DNA rep 27.2 2.9E+02 0.01 24.1 8.3 26 814-839 49-74 (83)
470 3lss_A Seryl-tRNA synthetase; 27.1 2.2E+02 0.0076 33.2 10.3 32 754-785 36-67 (484)
471 1gd2_E Transcription factor PA 26.9 1.1E+02 0.0037 25.9 5.6 19 809-827 48-66 (70)
472 4a4z_A Antiviral helicase SKI2 26.9 25 0.00087 45.1 2.6 23 166-190 48-70 (997)
473 1t6f_A Geminin; coiled-coil, c 26.9 1.3E+02 0.0045 21.8 5.0 31 678-708 4-34 (37)
474 1kd8_A GABH AIV, GCN4 acid bas 26.9 1.4E+02 0.0048 21.7 5.1 24 816-839 6-29 (36)
475 1r6b_X CLPA protein; AAA+, N-t 26.8 27 0.00092 43.3 2.7 17 175-191 489-505 (758)
476 3iij_A Coilin-interacting nucl 26.6 17 0.00058 35.9 0.7 17 175-191 12-28 (180)
477 1ik9_A DNA repair protein XRCC 26.6 4.9E+02 0.017 26.7 11.8 9 724-732 136-144 (213)
478 1qhx_A CPT, protein (chloramph 26.6 18 0.00061 35.5 0.9 17 175-191 4-20 (178)
479 3lay_A Zinc resistance-associa 26.5 3.1E+02 0.011 27.3 9.9 17 819-835 114-130 (175)
480 3r2p_A Apolipoprotein A-I; amp 26.4 2.7E+02 0.0093 27.8 9.7 32 683-714 135-167 (185)
481 2oxj_A Hybrid alpha/beta pepti 26.1 1.1E+02 0.0039 21.8 4.5 27 922-948 5-31 (34)
482 2q6q_A Spindle POLE BODY compo 25.9 2.9E+02 0.0098 23.0 8.7 42 804-845 17-58 (74)
483 1deb_A APC protein, adenomatou 25.9 2.4E+02 0.0082 22.1 7.5 25 803-827 16-40 (54)
484 2ke4_A CDC42-interacting prote 25.8 3.2E+02 0.011 24.6 8.9 36 762-797 15-50 (98)
485 3lnc_A Guanylate kinase, GMP k 25.8 21 0.00071 37.0 1.2 16 176-191 29-44 (231)
486 3ghg_C Fibrinogen gamma chain; 25.8 7.7E+02 0.026 27.9 14.9 43 686-732 89-131 (411)
487 3r6n_A Desmoplakin; spectrin r 25.7 8E+02 0.027 28.1 26.4 62 894-957 203-267 (450)
488 2ic9_A Nucleocapsid protein; h 25.6 1.9E+02 0.0066 25.8 7.1 24 691-714 48-71 (96)
489 1lkx_A Myosin IE heavy chain; 25.5 31 0.0011 42.3 2.9 35 156-191 76-111 (697)
490 1fmh_A General control protein 25.5 1.1E+02 0.0037 20.9 4.2 24 814-837 4-27 (33)
491 3cl3_D NF-kappa-B essential mo 25.4 90 0.0031 29.4 5.2 52 606-657 28-79 (130)
492 2ga8_A Hypothetical 39.9 kDa p 25.3 35 0.0012 38.4 3.0 33 158-190 4-40 (359)
493 2oca_A DAR protein, ATP-depend 25.3 21 0.00071 41.8 1.2 27 163-191 119-145 (510)
494 2a01_A Apolipoprotein A-I; fou 25.2 6E+02 0.02 26.4 19.2 172 599-822 53-238 (243)
495 2j41_A Guanylate kinase; GMP, 25.2 18 0.00063 36.3 0.7 16 176-191 8-23 (207)
496 2px0_A Flagellar biosynthesis 25.0 18 0.00061 39.5 0.6 16 176-191 107-122 (296)
497 2zxx_A Geminin; coiled-coil, c 25.0 3.1E+02 0.011 23.7 8.1 63 801-871 17-79 (79)
498 1j8m_F SRP54, signal recogniti 25.0 47 0.0016 36.2 4.0 46 146-191 61-115 (297)
499 2a01_A Apolipoprotein A-I; fou 24.8 6.1E+02 0.021 26.4 17.5 217 591-837 3-239 (243)
500 2bdt_A BH3686; alpha-beta prot 24.7 19 0.00064 35.9 0.6 16 176-191 4-19 (189)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=3.5e-88 Score=771.99 Aligned_cols=343 Identities=41% Similarity=0.634 Sum_probs=292.6
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCC----CEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADG----DKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~----~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G 172 (1100)
...++|+|+|||||+++.|...+...++..++ ..+... .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~----~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G 83 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA----GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAG 83 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC----CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCC
Confidence 35789999999999999998877765544332 344332 4689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCCC---CCCchhHHHHHHHHHhhcC-CCceEEEEEeeeeeecceeeecCCCCCCcceEE
Q 001324 173 VNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR 248 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~G~~~---~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~ 248 (1100)
||+||||||||||||||||+|+.. .+|||||++++||..+... .+..|.|+|||+|||||+|+|||++....+.|+
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~ 163 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEE
T ss_pred CceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEE
Confidence 999999999999999999999754 5699999999999999764 456899999999999999999999988899999
Q ss_pred eCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCC
Q 001324 249 EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAG 327 (1100)
Q Consensus 249 e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAG 327 (1100)
+++ .|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.+..... .....|+|+||||||
T Consensus 164 e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAG 241 (365)
T 2y65_A 164 EDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN--QKKLSGKLYLVDLAG 241 (365)
T ss_dssp ECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT--CCEEEEEEEEEECCC
T ss_pred ECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC--CCEeEEEEEEEECCC
Confidence 998 57899999999999999999999999999999999999999999999999999876543 346789999999999
Q ss_pred CCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHH
Q 001324 328 SES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1100)
Q Consensus 328 sE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl 406 (1100)
||| .++++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||+
T Consensus 242 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl 321 (365)
T 2y65_A 242 SEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETK 321 (365)
T ss_dssp CCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHH
Confidence 999 6789999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccChHHHHHHHHHHHHHHH
Q 001324 407 NTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLK 445 (1100)
Q Consensus 407 ~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk 445 (1100)
+||+||+|||+|+|.|.+|+..+...+++.|++++.+++
T Consensus 322 ~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~ 360 (365)
T 2y65_A 322 STLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNA 360 (365)
T ss_dssp HHHHHHHHHTTCEEECCCEEECCSHHHHHC---------
T ss_pred HHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888888876554
No 2
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=7.3e-87 Score=761.21 Aligned_cols=343 Identities=34% Similarity=0.535 Sum_probs=305.4
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC-EEEec-CCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCc
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYADGD-KIVRN-EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN 174 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~-~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n 174 (1100)
+.+++|+|+|||||+++.|...+..+.+..++. ++... .....+.|.||+||+++++|++||+. +.|+|+++|+|||
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCc
Confidence 357899999999999999987776655554444 33322 22344789999999999999999998 6999999999999
Q ss_pred eeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCC-ceEEEEEeeeeeecceeeecCCCCC---CcceEEeC
Q 001324 175 GTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPG-REFLLRVSYLEIYNEVINDLLDPTG---QNLRVRED 250 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~-~~~~v~vS~~EIyne~i~DLL~~~~---~~l~i~e~ 250 (1100)
+||||||||||||||||+|++.++|||||++++||..+..... ..|.|+|||+|||||+|+|||+|.. ..+.|+++
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~ 160 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEEC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEEC
Confidence 9999999999999999999999999999999999999987654 5899999999999999999999753 57999999
Q ss_pred C-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCC
Q 001324 251 A-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSE 329 (1100)
Q Consensus 251 ~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE 329 (1100)
+ .|++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|++..... .....|+|+||||||||
T Consensus 161 ~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGSE 238 (369)
T 3cob_A 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT--QAIARGKLSFVDLAGSE 238 (369)
T ss_dssp TTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTT--CCEEEEEEEEEECCCSS
T ss_pred CCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCC--CcEEEEEEEEEeCCCCC
Confidence 8 57899999999999999999999999999999999999999999999999999876543 45678999999999999
Q ss_pred C-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHH
Q 001324 330 S-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1100)
Q Consensus 330 ~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~T 408 (1100)
| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++|
T Consensus 239 r~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~T 317 (369)
T 3cob_A 239 RVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNS 317 (369)
T ss_dssp CCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHH
Confidence 9 6789999999999999999999999999999875 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHhc
Q 001324 409 LKFASRAKRVEIYASRNKIIDEKSLIKKYQREISSLKEELDQLKR 453 (1100)
Q Consensus 409 L~fa~rak~i~~~~~~n~~~~~~~~~~~lq~eI~~Lk~eL~qlk~ 453 (1100)
|+||+|||+|+|.|.+|... .+|..|+.+|..++.
T Consensus 318 LrfA~rak~i~~~~~~n~~~----------~ei~~L~~~l~~~~~ 352 (369)
T 3cob_A 318 LTYASRVRSIVNDPSKNVSS----------KEVARLKKLVSYWKE 352 (369)
T ss_dssp HHHHHHHHTCBCCCCCCEEC----------HHHHHHHHHTTCC--
T ss_pred HHHHHHHhhcccCCcccCCH----------HHHHHHHHHHHHHHH
Confidence 99999999999999999864 455566666655543
No 3
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=5.6e-87 Score=761.89 Aligned_cols=342 Identities=39% Similarity=0.611 Sum_probs=287.3
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEecCC-----CCCcceecceecCCCCChhHHHhhhhHHHHHH
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNEY-----NPATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~ 168 (1100)
....++|+|+||+||+++.|...+...++. .+...+.+... ...+.|.||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 455789999999999999998777654443 33445544332 23568999999999999999999999999999
Q ss_pred HhcCCceeEEeeccCCCCCccccCCCCC---CCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCC-Cc
Q 001324 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG-QN 244 (1100)
Q Consensus 169 ~l~G~n~ti~aYGqtgSGKT~Tm~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~-~~ 244 (1100)
+|+|||+||||||||||||||||+|... .+|||||++++||..+...++..|.|+|||+|||||+|+|||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 9999999999999999999999999754 5699999999999999988888999999999999999999999864 67
Q ss_pred ceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-CCCceEEeeeEE
Q 001324 245 LRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-EYDGVIFSQLNL 322 (1100)
Q Consensus 245 l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~~~~~~~s~L~l 322 (1100)
+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|+....+. ....+..|+|+|
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~l 256 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNL 256 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEE
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEE
Confidence 9999998 57899999999999999999999999999999999999999999999999999876432 234567899999
Q ss_pred EecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCC
Q 001324 323 IDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSS 401 (1100)
Q Consensus 323 VDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~ 401 (1100)
|||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 257 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~ 336 (372)
T 3b6u_A 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYN 336 (372)
T ss_dssp EECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccC
Confidence 99999999 67899999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccccccChHHHHHHHH
Q 001324 402 MEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQ 438 (1100)
Q Consensus 402 ~~eTl~TL~fa~rak~i~~~~~~n~~~~~~~~~~~lq 438 (1100)
++||++||+||+|||+|+|.|.+|+... ..++++||
T Consensus 337 ~~ETlsTLrfA~rak~I~n~~~~n~~~~-~~~~~~~~ 372 (372)
T 3b6u_A 337 VEETLTTLRYANRAKNIKNKPRVNEDPK-DALLREFQ 372 (372)
T ss_dssp HHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred HHHHHHHHHHHHHHhhccccceecCChH-HHHHHhcC
Confidence 9999999999999999999999998543 35666553
No 4
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.4e-86 Score=754.90 Aligned_cols=329 Identities=39% Similarity=0.620 Sum_probs=273.0
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEe--eCCCEEEecC----------CCCCcceecceecCCCCChhHHHhhhhHHHH
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWY--ADGDKIVRNE----------YNPATAYAFDRVFGPHANSQEVYDVAARPVV 166 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~~~~~----------~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv 166 (1100)
.++|+|+||+||++++|...+...++. .++..+.+.. ....+.|.||+||+++++|++||+.++.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 579999999999999998777644433 3344444432 1235689999999999999999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc-CCCceEEEEEeeeeeecceeeecCCCCCCcc
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNL 245 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l 245 (1100)
+++|+|||+||||||||||||||||+|++.++|||||++++||+.+.. .++..|.|+|||+|||||+|+|||++ ...+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN-NTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT-EEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC-CcCc
Confidence 999999999999999999999999999999999999999999999984 45679999999999999999999984 4579
Q ss_pred eEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEe
Q 001324 246 RVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLID 324 (1100)
Q Consensus 246 ~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVD 324 (1100)
.|++++ .|+||.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++............|+|+|||
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVD 241 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVD 241 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEe
Confidence 999998 5789999999999999999999999999999999999999999999999999987765554556789999999
Q ss_pred cCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHH
Q 001324 325 LAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSME 403 (1100)
Q Consensus 325 LAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~ 403 (1100)
|||||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++
T Consensus 242 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 320 (350)
T 2vvg_A 242 LAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYD 320 (350)
T ss_dssp CCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 999999 6789999999999999999999999999999976 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccccccC
Q 001324 404 ETHNTLKFASRAKRVEIYASRNKIID 429 (1100)
Q Consensus 404 eTl~TL~fa~rak~i~~~~~~n~~~~ 429 (1100)
||++||+||+|||+|+|.|.+|+..+
T Consensus 321 ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 321 ETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp HHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred HHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999999998544
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-87 Score=763.59 Aligned_cols=336 Identities=34% Similarity=0.546 Sum_probs=256.5
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeE-EEeeCCCEEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEI-AWYADGDKIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~-~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~ 171 (1100)
....++|+|+|||||+++.|...+... +...++..+.+... .....|.||+||+++++|++||+.++.|+|+++|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 455789999999999999997654433 33344444332221 23467999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc----CCCceEEEEEeeeeeecceeeecCCCCCCcceE
Q 001324 172 GVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD----TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRV 247 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~----~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i 247 (1100)
|||+||||||||||||||||+|++.++|||||++.+||..+.. .....|.|+|||+|||||+|+|||+|....+.|
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i 176 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence 9999999999999999999999999999999999999999974 345689999999999999999999999889999
Q ss_pred EeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecC
Q 001324 248 REDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLA 326 (1100)
Q Consensus 248 ~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLA 326 (1100)
++++ .|++|.||+++.|.|+++++.+|..|..+|++++|.||..|||||+||+|.|.+...... .....|+|+|||||
T Consensus 177 red~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~-~~~~~skL~lVDLA 255 (388)
T 3bfn_A 177 REDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAP-FRQREGKLYLIDLA 255 (388)
T ss_dssp EECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTT-CCEEEEEEEEEECC
T ss_pred EEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCC-CceeEEEEEEEECC
Confidence 9998 578999999999999999999999999999999999999999999999999998765432 33578999999999
Q ss_pred CCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHH
Q 001324 327 GSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1100)
Q Consensus 327 GsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eT 405 (1100)
|||| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||
T Consensus 256 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ET 334 (388)
T 3bfn_A 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDT 334 (388)
T ss_dssp CTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHH
T ss_pred CCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHH
Confidence 9999 6789999999999999999999999999999876 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccChHHH
Q 001324 406 HNTLKFASRAKRVEIYASRNKIIDEKSL 433 (1100)
Q Consensus 406 l~TL~fa~rak~i~~~~~~n~~~~~~~~ 433 (1100)
++||+||+|||+|+|+|.+|+..+..++
T Consensus 335 lsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 335 VSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp HHHHHHHCSEEEEC--------------
T ss_pred HHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 9999999999999999999998777644
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.8e-86 Score=754.53 Aligned_cols=332 Identities=40% Similarity=0.616 Sum_probs=304.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~t 176 (1100)
..++|+|+||+||+++.|...+...++. .++.++..........|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 4689999999999999998777655444 344455554445567899999999999999999999999999999999999
Q ss_pred EEeeccCCCCCccccCCC----CCCCCchhHHHHHHHHHhhcC-CCceEEEEEeeeeeecceeeecCCCCCCcceEEeCC
Q 001324 177 VFAYGVTSSGKTHTMHGD----QNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~G~----~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~ 251 (1100)
|||||||||||||||+|+ +..+|||||++++||..|... .+..|.|+|||+|||||+|||||+|....+.|++++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 999999999999999996 466899999999999999764 356899999999999999999999998899999998
Q ss_pred -CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC
Q 001324 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1100)
Q Consensus 252 -~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~ 330 (1100)
.|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+..... +....|+|+|||||||||
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGSEr 241 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET--GSAKSGQLFLVDLAGSEK 241 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT--TEEEEEEEEEEECCCCSC
T ss_pred CCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC--CceeeeEEEEEECCCCCc
Confidence 67899999999999999999999999999999999999999999999999999876543 456789999999999999
Q ss_pred -cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHH
Q 001324 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1100)
Q Consensus 331 -~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL 409 (1100)
.++++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..+++||++||
T Consensus 242 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL 321 (355)
T 1goj_A 242 VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTL 321 (355)
T ss_dssp CTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHH
T ss_pred ccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHH
Confidence 5689999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccChH
Q 001324 410 KFASRAKRVEIYASRNKIIDEK 431 (1100)
Q Consensus 410 ~fa~rak~i~~~~~~n~~~~~~ 431 (1100)
+||+|||+|+|.|.+|+..+..
T Consensus 322 ~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 322 RFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999876653
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-86 Score=755.55 Aligned_cols=328 Identities=46% Similarity=0.764 Sum_probs=291.9
Q ss_pred CCCEEEEEEeCCCChhhhhcCC--eEEEeeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCcee
Q 001324 99 GDSISVTIRFRPLSEREFQRGD--EIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGT 176 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~--~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~t 176 (1100)
.++|+|+|||||++.+|...+. .+.|..++..+... ...+.|.||+||+++++|++||+.++.|+|+++|+|||+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~--~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET--TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC--CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccc
Confidence 6899999999999999976554 34566666666543 3457899999999999999999999999999999999999
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCCC--CcceEEeCC-CC
Q 001324 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPTG--QNLRVREDA-QG 253 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~~--~~l~i~e~~-~g 253 (1100)
|||||||||||||||+|+++++|||||++++||..|...++..|.|+|||+|||||+|+|||++.. .+|.|++++ .|
T Consensus 81 ifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~ 160 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160 (349)
T ss_dssp EEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTE
T ss_pred eeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCC
Confidence 999999999999999999999999999999999999988889999999999999999999998753 679999998 57
Q ss_pred cEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCC---CCceEEeeeEEEecCCCCC
Q 001324 254 TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE---YDGVIFSQLNLIDLAGSES 330 (1100)
Q Consensus 254 ~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~---~~~~~~s~L~lVDLAGsE~ 330 (1100)
++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|++...+.. ...+..|+|+|||||||||
T Consensus 161 ~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr 240 (349)
T 1t5c_A 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSER 240 (349)
T ss_dssp EEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGG
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCcc
Confidence 8999999999999999999999999999999999999999999999999998765432 2356789999999999999
Q ss_pred -cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCC-CCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHH
Q 001324 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK-ASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNT 408 (1100)
Q Consensus 331 -~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~-~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~T 408 (1100)
.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||||||+ +++||++|
T Consensus 241 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsT 318 (349)
T 1t5c_A 241 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTA 318 (349)
T ss_dssp TC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHH
T ss_pred ccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHH
Confidence 5689999999999999999999999999999875 3699999999999999999999999999999996 58999999
Q ss_pred HHHHHHhcccccccccccccCh
Q 001324 409 LKFASRAKRVEIYASRNKIIDE 430 (1100)
Q Consensus 409 L~fa~rak~i~~~~~~n~~~~~ 430 (1100)
|+||+|||+|+|.|.+|+..+.
T Consensus 319 L~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 319 LQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHhhcccCceeccCCCC
Confidence 9999999999999999987654
No 8
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.8e-86 Score=772.13 Aligned_cols=330 Identities=38% Similarity=0.610 Sum_probs=278.8
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCC--EEEecC----------------CCCCcceecceecCCC------
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGD--KIVRNE----------------YNPATAYAFDRVFGPH------ 151 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~--~~~~~~----------------~~~~~~f~FD~Vf~~~------ 151 (1100)
.+..++|+|+|||||++++|...+..+++..++. .+.+.. ....+.|.||+|||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 4567899999999999999988877666555432 222111 1135689999999864
Q ss_pred -CChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC----CCceEEEEEee
Q 001324 152 -ANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT----PGREFLLRVSY 226 (1100)
Q Consensus 152 -~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~----~~~~~~v~vS~ 226 (1100)
++|++||+.++.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||..|... ++..|.|+|||
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~ 193 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSY 193 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEE
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999753 46799999999
Q ss_pred eeeecceeeecCCCC-----CCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEE
Q 001324 227 LEIYNEVINDLLDPT-----GQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1100)
Q Consensus 227 ~EIyne~i~DLL~~~-----~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~ 300 (1100)
||||||+|||||+|. ...|.|++++ .|+||.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+
T Consensus 194 lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ift 273 (443)
T 2owm_A 194 FEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273 (443)
T ss_dssp EEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEE
T ss_pred EEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEE
Confidence 999999999999873 2359999998 6789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecC--CCCCceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCC------------
Q 001324 301 LMIESSDHG--DEYDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA------------ 365 (1100)
Q Consensus 301 i~v~~~~~~--~~~~~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~------------ 365 (1100)
|.|.+.... ........|+|+||||||||| .+++++|.|++|+.+||+||++||+||.+|++++.
T Consensus 274 i~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 999886432 222345789999999999999 56899999999999999999999999999987542
Q ss_pred ---------CCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 001324 366 ---------SHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 427 (1100)
Q Consensus 366 ---------~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~ 427 (1100)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|+|+|.+|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999996 599999999999999999999999985
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.7e-85 Score=750.22 Aligned_cols=329 Identities=39% Similarity=0.611 Sum_probs=280.2
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC----CCCcceecceecCCC--------CChhHHHhhhhHHHH
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----NPATAYAFDRVFGPH--------ANSQEVYDVAARPVV 166 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----~~~~~f~FD~Vf~~~--------~~q~~vy~~~~~~lv 166 (1100)
.++|+|+|||||++.+|...+..+++..++..+.+... ...+.|.||+|||++ ++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 46899999999999999888877777766666544322 135689999999987 899999999999999
Q ss_pred HHHhcCCceeEEeeccCCCCCccccCCCC--CCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCCCCC
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMHGDQ--NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG 242 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~--~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~~~~ 242 (1100)
+++|+|||+||||||||||||||||+|+. .++|||||++++||..|... .+..|.|+|||+|||||+|+|||+|..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999985 57899999999999999865 346899999999999999999999864
Q ss_pred -CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCC--CceEEe
Q 001324 243 -QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEY--DGVIFS 318 (1100)
Q Consensus 243 -~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~--~~~~~s 318 (1100)
..|.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+....... .....|
T Consensus 163 ~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s 242 (366)
T 2zfi_A 163 KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS 242 (366)
T ss_dssp CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEE
T ss_pred CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEe
Confidence 579999998 6899999999999999999999999999999999999999999999999999886544322 345679
Q ss_pred eeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcC-----------CCCCcCCCCCccchhhcccCCCC
Q 001324 319 QLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG-----------KASHVPYRDSKLTRLLQSSLSGH 386 (1100)
Q Consensus 319 ~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~-----------~~~~iPyRdSkLT~lL~dsLgGn 386 (1100)
+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 243 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 322 (366)
T 2zfi_A 243 KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGN 322 (366)
T ss_dssp EEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTT
T ss_pred EEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCC
Confidence 999999999999 568999999999999999999999999999873 35699999999999999999999
Q ss_pred ccceeEEeeCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 001324 387 GHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNKI 427 (1100)
Q Consensus 387 s~t~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~ 427 (1100)
|+|+|||||||+..+++||++||+||+|||+|+|.|.++..
T Consensus 323 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~~ 363 (366)
T 2zfi_A 323 SRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH 363 (366)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHTC-----------
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 99999999999999999999999999999999999988753
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.3e-85 Score=736.46 Aligned_cols=315 Identities=44% Similarity=0.690 Sum_probs=288.9
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCCce
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG 175 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ 175 (1100)
...++|+|+|||||++++|...+...++ ..++.++... .+.|.||+||+++++|++||+.+++|+|+++|+|||+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 3468999999999999999887765443 3445555543 4689999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCccccCCCCCC---CCchhHHHHHHHHHhhc-CCCceEEEEEeeeeeecceeeecCCCCCCcceEEeCC
Q 001324 176 TVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDA 251 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm~G~~~~---~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~e~~ 251 (1100)
||||||||||||||||+|+..+ +|||||++++||+.|.. .++..|.|+|||+|||||+|+|||++....+.|++++
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~ 159 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK 159 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECC
Confidence 9999999999999999997544 59999999999999975 4567999999999999999999999988899999998
Q ss_pred -CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCCCC
Q 001324 252 -QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGSES 330 (1100)
Q Consensus 252 -~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~ 330 (1100)
.|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+..... .....|+|+|||||||||
T Consensus 160 ~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skl~lVDLAGSEr 237 (325)
T 1bg2_A 160 NRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT--EQKLSGKLYLVDLAGSEK 237 (325)
T ss_dssp TSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT--CCEEEEEEEEEECCCSCC
T ss_pred CCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC--CcEEEEEEEEEECCCCCc
Confidence 57899999999999999999999999999999999999999999999999999876543 346789999999999999
Q ss_pred -cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHH
Q 001324 331 -SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTL 409 (1100)
Q Consensus 331 -~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL 409 (1100)
.++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++||
T Consensus 238 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL 316 (325)
T 1bg2_A 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTL 316 (325)
T ss_dssp CCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHH
T ss_pred ccccCCccccchHHHHHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHH
Confidence 6789999999999999999999999999999874 59999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 001324 410 KFASRAKRV 418 (1100)
Q Consensus 410 ~fa~rak~i 418 (1100)
+||+|||+|
T Consensus 317 ~fa~rak~I 325 (325)
T 1bg2_A 317 LFGQRAKTI 325 (325)
T ss_dssp HHHHTSCCC
T ss_pred HHHHHhccC
Confidence 999999987
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=8.9e-85 Score=743.07 Aligned_cols=322 Identities=37% Similarity=0.593 Sum_probs=259.7
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEee-CCCEEEecC---------------------CCCCcceecceecCCCCC
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYA-DGDKIVRNE---------------------YNPATAYAFDRVFGPHAN 153 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~~f~FD~Vf~~~~~ 153 (1100)
.+..++|+|+|||||++.+|...+...++.+ ++..++... ..+...|.||+||+++++
T Consensus 6 ~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~ 85 (355)
T 3lre_A 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETST 85 (355)
T ss_dssp ------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCC
T ss_pred hhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCC
Confidence 4567899999999999999988776544433 333333211 113457999999999999
Q ss_pred hhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcCC-CceEEEEEeeeeeecc
Q 001324 154 SQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDTP-GREFLLRVSYLEIYNE 232 (1100)
Q Consensus 154 q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIyne 232 (1100)
|++||+.++.|+|+++|+|||+||||||||||||||||+|++.++|||||++.+||..+.... ...|.|+|||+|||||
T Consensus 86 Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE 165 (355)
T 3lre_A 86 QSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165 (355)
T ss_dssp HHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999998654 4689999999999999
Q ss_pred eeeecCCCCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCC
Q 001324 233 VINDLLDPTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE 311 (1100)
Q Consensus 233 ~i~DLL~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~ 311 (1100)
+|+|||++. .++.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+....
T Consensus 166 ~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 244 (355)
T 3lre_A 166 QIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTAS 244 (355)
T ss_dssp EEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSC
T ss_pred EEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCC
Confidence 999999875 479999998 689999999999999999999999999999999999999999999999999998765432
Q ss_pred -CCceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCC--CCCcCCCCCccchhhcccCCCCc
Q 001324 312 -YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHG 387 (1100)
Q Consensus 312 -~~~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~--~~~iPyRdSkLT~lL~dsLgGns 387 (1100)
...+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 2345679999999999999 6789999999999999999999999999999854 46999999999999999999999
Q ss_pred cceeEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001324 388 HVSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 388 ~t~~I~~isp~~~~~~eTl~TL~fa~rak~i 418 (1100)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999987
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=4.7e-85 Score=746.42 Aligned_cols=328 Identities=37% Similarity=0.600 Sum_probs=275.3
Q ss_pred CCCCCEEEEEEeCCCChhhhhcCCeEEEee--CCCEEEecC-----CCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 97 RSGDSISVTIRFRPLSEREFQRGDEIAWYA--DGDKIVRNE-----YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 97 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~~~~~~-----~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
...++|+|+|||||++..|...+...++.. +...+.+.. ....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 456899999999999999987766544433 233333211 1234689999999999999999999999999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCC-----------CCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecC
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLL 238 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~G~~~-----------~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL 238 (1100)
|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. .+..|.|+|||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 999999999999999999999999764 369999999999999975 46799999999999999999999
Q ss_pred CCCC---CcceEEeCC---CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC-C
Q 001324 239 DPTG---QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD-E 311 (1100)
Q Consensus 239 ~~~~---~~l~i~e~~---~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-~ 311 (1100)
+|.. ..+.|++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|....... +
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 243 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCC
Confidence 9864 469999997 47899999999999999999999999999999999999999999999999998765322 2
Q ss_pred CCceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccce
Q 001324 312 YDGVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVS 390 (1100)
Q Consensus 312 ~~~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~ 390 (1100)
...+..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+||||++|+
T Consensus 244 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~ 322 (359)
T 1x88_A 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTS 322 (359)
T ss_dssp CEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEE
T ss_pred CceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEE
Confidence 2345789999999999999 6789999999999999999999999999999864 6999999999999999999999999
Q ss_pred eEEeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001324 391 LICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1100)
Q Consensus 391 ~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~ 426 (1100)
|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 323 mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 999999999999999999999999999999999986
No 13
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-84 Score=743.25 Aligned_cols=332 Identities=39% Similarity=0.634 Sum_probs=278.6
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEE-eeCCCEEEecC---CCCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAW-YADGDKIVRNE---YNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~-~~~~~~~~~~~---~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~ 171 (1100)
....++|+|+|||||++.+|...+...++ ..++..++... ....+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~ 98 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLN 98 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhC
Confidence 34578999999999999999765543333 34444444322 224578999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCCCC-----------CCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCC
Q 001324 172 GVNGTVFAYGVTSSGKTHTMHGDQN-----------SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDP 240 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~G~~~-----------~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~ 240 (1100)
|||+||||||||||||||||+|+.. ++|||||++++||+.+... +..|.|+|||+|||||+|+|||++
T Consensus 99 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DLL~~ 177 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDLLST 177 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEESSCT
T ss_pred CceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEECCCC
Confidence 9999999999999999999999764 6799999999999999764 468999999999999999999987
Q ss_pred CC-CcceEEeCC---CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCC-CCce
Q 001324 241 TG-QNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDE-YDGV 315 (1100)
Q Consensus 241 ~~-~~l~i~e~~---~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~-~~~~ 315 (1100)
.. ..+.+++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.....+.. ....
T Consensus 178 ~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 257 (373)
T 2wbe_C 178 DDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDML 257 (373)
T ss_dssp TSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEE
T ss_pred CCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcce
Confidence 64 568888884 368999999999999999999999999999999999999999999999999988654322 2345
Q ss_pred EEeeeEEEecCCCCC-cccccc-hhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEE
Q 001324 316 IFSQLNLIDLAGSES-SKTETT-GLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1100)
Q Consensus 316 ~~s~L~lVDLAGsE~-~~~~~~-g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~ 393 (1100)
..|+|+||||||||| .++++. |.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+|||||+|+|||
T Consensus 258 ~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa 336 (373)
T 2wbe_C 258 KIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIA 336 (373)
T ss_dssp EEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEE
T ss_pred eEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEE
Confidence 789999999999999 567776 9999999999999999999999999864 6999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccccccccC
Q 001324 394 TVTPASSSMEETHNTLKFASRAKRVEIYASRNKIID 429 (1100)
Q Consensus 394 ~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~~~~ 429 (1100)
||||+..+++||++||+||+|||+|+|+|.+|+...
T Consensus 337 ~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 337 TISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 999999999999999999999999999999998643
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=6.4e-84 Score=734.62 Aligned_cols=320 Identities=39% Similarity=0.631 Sum_probs=264.7
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEE--eeCCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhc
Q 001324 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAW--YADGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAME 171 (1100)
Q Consensus 94 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~--~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~ 171 (1100)
.|....++|+|+|||||++++|...+...++ .++...+.. ...+.|.||+||+++++|++||+.++.|+|+++|+
T Consensus 5 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp ----CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE---TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe---cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 3445678999999999999999876654333 233334433 24578999999999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCccccCCC------CCCCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCC--CC
Q 001324 172 GVNGTVFAYGVTSSGKTHTMHGD------QNSPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT--GQ 243 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~G~------~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~--~~ 243 (1100)
|||+||||||||||||||||+|+ .+++|||||++++||..+...+...|.|+|||+|||||+|+|||++. ..
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 161 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR 161 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence 99999999999999999999997 46799999999999999998888899999999999999999999864 35
Q ss_pred cceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCC------CCCceE
Q 001324 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGD------EYDGVI 316 (1100)
Q Consensus 244 ~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~------~~~~~~ 316 (1100)
.+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++..... ....+.
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 79999998 57899999999999999999999999999999999999999999999999999875321 224567
Q ss_pred EeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcC--CCCCcCCCCCccchhhcccCCCCccceeEE
Q 001324 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEG--KASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1100)
Q Consensus 317 ~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~--~~~~iPyRdSkLT~lL~dsLgGns~t~~I~ 393 (1100)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+|||||+|+|||
T Consensus 242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 321 (344)
T 4a14_A 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321 (344)
T ss_dssp EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence 89999999999999 678999999999999999999999999999875 346999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhc
Q 001324 394 TVTPASSSMEETHNTLKFASRAK 416 (1100)
Q Consensus 394 ~isp~~~~~~eTl~TL~fa~rak 416 (1100)
||||+..+++||++||+||+|||
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999997
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-83 Score=733.28 Aligned_cols=319 Identities=39% Similarity=0.630 Sum_probs=263.7
Q ss_pred CCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC----------CCCcceecceecC--------CCCChhHHHhhh
Q 001324 100 DSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY----------NPATAYAFDRVFG--------PHANSQEVYDVA 161 (1100)
Q Consensus 100 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~----------~~~~~f~FD~Vf~--------~~~~q~~vy~~~ 161 (1100)
.+|+|+|||||++.+|...+..+++..++..++.... ...+.|.||+||| +.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 3799999999999999988877777777776654321 2356799999994 567899999999
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc--CCCceEEEEEeeeeeecceeeecCC
Q 001324 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLD 239 (1100)
Q Consensus 162 ~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIyne~i~DLL~ 239 (1100)
+.|+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+.. ..+..|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 99999999999999999999999999999999999999999999999999864 3456899999999999999999999
Q ss_pred CCC--CcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecC--CCCCc
Q 001324 240 PTG--QNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHG--DEYDG 314 (1100)
Q Consensus 240 ~~~--~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~--~~~~~ 314 (1100)
|.+ ..+.|++++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.... .....
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 240 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence 863 579999998 5899999999999999999999999999999999999999999999999999876432 22344
Q ss_pred eEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhc-----CCCCCcCCCCCccchhhcccCCCCcc
Q 001324 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSE-----GKASHVPYRDSKLTRLLQSSLSGHGH 388 (1100)
Q Consensus 315 ~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~-----~~~~~iPyRdSkLT~lL~dsLgGns~ 388 (1100)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++ ++..|||||||||||||||+|||||+
T Consensus 241 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnsk 320 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320 (354)
T ss_dssp EEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCE
T ss_pred eeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCe
Confidence 6789999999999999 67899999999999999999999999999986 34579999999999999999999999
Q ss_pred ceeEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001324 389 VSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 389 t~~I~~isp~~~~~~eTl~TL~fa~rak~i 418 (1100)
|+|||||||+..+++||++||+||.||+.-
T Consensus 321 t~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 321 TAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred EEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999863
No 16
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.1e-84 Score=734.96 Aligned_cols=319 Identities=35% Similarity=0.560 Sum_probs=261.0
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEec-----------CCCCCcceecceecCCCCChhHHHhhhhHH
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRN-----------EYNPATAYAFDRVFGPHANSQEVYDVAARP 164 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-----------~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~ 164 (1100)
...+++|+|+|||||++..|.. .+.+..++..+.+. .......|.||+||+ +++|++||+.+++|
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~p 95 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE---MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 95 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT---TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCCEEEEEEcCCCCccccc---ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHH
Confidence 3557899999999999876532 22232333333321 122335699999997 58999999999999
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccCCCCC---CCCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCCCC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN---SPGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLDPT 241 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~---~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~~~ 241 (1100)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+...++..|.|+|||+|||||+|+|||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 175 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 175 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccccc
Confidence 99999999999999999999999999999764 479999999999999998889999999999999999999999853
Q ss_pred ------CCcceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCce
Q 001324 242 ------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGV 315 (1100)
Q Consensus 242 ------~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~ 315 (1100)
...+.+++++.|++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|............
T Consensus 176 ~~~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~ 255 (359)
T 3nwn_A 176 PYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKY 255 (359)
T ss_dssp TTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CC
T ss_pred cccccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccc
Confidence 34688999999999999999999999999999999999999999999999999999999999887655555566
Q ss_pred EEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEe
Q 001324 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICT 394 (1100)
Q Consensus 316 ~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~ 394 (1100)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||||
T Consensus 256 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~ 335 (359)
T 3nwn_A 256 ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTN 335 (359)
T ss_dssp EEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEE
T ss_pred ccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEE
Confidence 789999999999999 6789999999999999999999999999999988889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhccc
Q 001324 395 VTPASSSMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 395 isp~~~~~~eTl~TL~fa~rak~i 418 (1100)
|||+..+++||++||+||+|||+|
T Consensus 336 isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 336 IYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp ECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999987
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.7e-83 Score=720.81 Aligned_cols=318 Identities=37% Similarity=0.558 Sum_probs=272.4
Q ss_pred CCCCEEEEEEeCCCChhhhhcCC---eEEEeeCCC-EEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcCC
Q 001324 98 SGDSISVTIRFRPLSEREFQRGD---EIAWYADGD-KIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGV 173 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~---~~~~~~~~~-~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~ 173 (1100)
.+++|+|+|||||+++.|...+. .+.+..++. .+..........|.||+||+++++|++||+. +.|+|+++|+||
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~ 80 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGF 80 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTC
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCC
Confidence 46899999999999998864322 233433333 3333333345689999999999999999997 589999999999
Q ss_pred ceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC-CCceEEEEEeeeeeecceeeecCCCCC-CcceEE--e
Q 001324 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT-PGREFLLRVSYLEIYNEVINDLLDPTG-QNLRVR--E 249 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIyne~i~DLL~~~~-~~l~i~--e 249 (1100)
|+||||||||||||||||+|++.++|||||++++||..++.. ++..|.|+|||+|||||+|+|||++.+ ..+.|+ +
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~ 160 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCP 160 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECT
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEee
Confidence 999999999999999999999999999999999999999764 456899999999999999999998753 344454 5
Q ss_pred CC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEecCCC
Q 001324 250 DA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDLAGS 328 (1100)
Q Consensus 250 ~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDLAGs 328 (1100)
++ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.+.+... +....|+|+|||||||
T Consensus 161 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~skL~lVDLAGS 238 (330)
T 2h58_A 161 DGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCST--GLRTTGKLNLVDLAGS 238 (330)
T ss_dssp TSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTT--TEEEEEEEEEEECCCC
T ss_pred cCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCC--CcEEEEEEEEEeCCCC
Confidence 65 57899999999999999999999999999999999999999999999999999876533 3467899999999999
Q ss_pred CC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHH
Q 001324 329 ES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHN 407 (1100)
Q Consensus 329 E~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~ 407 (1100)
|| .++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+|||||+|+|||||||+..+++||++
T Consensus 239 Er~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~ 317 (330)
T 2h58_A 239 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLY 317 (330)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHH
T ss_pred CcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHH
Confidence 99 6789999999999999999999999999999864 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q 001324 408 TLKFASRAKRVE 419 (1100)
Q Consensus 408 TL~fa~rak~i~ 419 (1100)
||+||+|||+|+
T Consensus 318 TL~fA~rak~i~ 329 (330)
T 2h58_A 318 SLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhhCc
Confidence 999999999986
No 18
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.7e-83 Score=731.63 Aligned_cols=321 Identities=35% Similarity=0.553 Sum_probs=262.9
Q ss_pred CCCCCCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCC-----------CCCcceecceecCCCCChhHHHhhhh
Q 001324 94 APQRSGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEY-----------NPATAYAFDRVFGPHANSQEVYDVAA 162 (1100)
Q Consensus 94 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~-----------~~~~~f~FD~Vf~~~~~q~~vy~~~~ 162 (1100)
.+...+|+|+|+|||||+...+. ..+.+..++..+..... .....|.||+||+ +++|++||+.++
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~---~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH---EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT---TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc---ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 44567899999999999876431 22334445555433211 2235699999995 899999999999
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccCCCCCC---CCchhHHHHHHHHHhhcCCCceEEEEEeeeeeecceeeecCC
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNS---PGIIPLAIKDVFSIIQDTPGREFLLRVSYLEIYNEVINDLLD 239 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~---~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIyne~i~DLL~ 239 (1100)
.|+|+++|+|||+||||||||||||||||+|+..+ +|||||++++||+.++..++..|.|+|||+|||||+|+|||+
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcC
Confidence 99999999999999999999999999999998765 899999999999999988888999999999999999999998
Q ss_pred CC------CCcceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCC
Q 001324 240 PT------GQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD 313 (1100)
Q Consensus 240 ~~------~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~ 313 (1100)
+. ..++.|++++.|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|.|+.........
T Consensus 173 ~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 252 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 252 (358)
T ss_dssp SSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------
T ss_pred CccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCC
Confidence 63 357999999999999999999999999999999999999999999999999999999999999876544445
Q ss_pred ceEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeE
Q 001324 314 GVIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1100)
Q Consensus 314 ~~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I 392 (1100)
....|+|+||||||||| .++++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+||
T Consensus 253 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI 332 (358)
T 2nr8_A 253 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLV 332 (358)
T ss_dssp CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEE
T ss_pred CEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEE
Confidence 56789999999999999 67899999999999999999999999999999887899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhccc
Q 001324 393 CTVTPASSSMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 393 ~~isp~~~~~~eTl~TL~fa~rak~i 418 (1100)
|||||+..+++||++||+||+|||+|
T Consensus 333 a~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 333 TNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.2e-82 Score=723.65 Aligned_cols=319 Identities=34% Similarity=0.504 Sum_probs=250.2
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEe--------eCCCEEEecC-------------CCCCcceecceecCCCCCh
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWY--------ADGDKIVRNE-------------YNPATAYAFDRVFGPHANS 154 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~--------~~~~~~~~~~-------------~~~~~~f~FD~Vf~~~~~q 154 (1100)
...+++|+|+|||||+++.|...+...+.. .++..+.+.. ......|.||+||+++++|
T Consensus 18 ~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q 97 (376)
T 2rep_A 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ 97 (376)
T ss_dssp -----CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred hccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence 456789999999999999997654321111 1223333221 1224579999999999999
Q ss_pred hHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCCC----CCCchhHHHHHHHHHhhcC--CCceEEEEEeeee
Q 001324 155 QEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQN----SPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLE 228 (1100)
Q Consensus 155 ~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~----~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~E 228 (1100)
++||+.+ .|+|+++|+|||+||||||||||||||||+|++. .+|||||++++||..+... .+..|.|+|||+|
T Consensus 98 ~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 176 (376)
T 2rep_A 98 DEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE 176 (376)
T ss_dssp HHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred hhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence 9999985 5899999999999999999999999999999754 6899999999999999753 3568999999999
Q ss_pred eecceeeecCCCC-----CCcceEEeCC---CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEE
Q 001324 229 IYNEVINDLLDPT-----GQNLRVREDA---QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFT 300 (1100)
Q Consensus 229 Iyne~i~DLL~~~-----~~~l~i~e~~---~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~ 300 (1100)
||||+|+|||++. ...+.|+++. .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+
T Consensus 177 IYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift 256 (376)
T 2rep_A 177 IYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ 256 (376)
T ss_dssp EETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEE
T ss_pred EECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEE
Confidence 9999999999875 2468899883 5789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCceEEeeeEEEecCCCCC-cccccch----hhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCcc
Q 001324 301 LMIESSDHGDEYDGVIFSQLNLIDLAGSES-SKTETTG----LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKL 375 (1100)
Q Consensus 301 i~v~~~~~~~~~~~~~~s~L~lVDLAGsE~-~~~~~~g----~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkL 375 (1100)
|.|....... .....|+|+||||||||| .++++.| .|++|+.+||+||++||+||.+|++++ .|||||||||
T Consensus 257 i~v~~~~~~~--~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkL 333 (376)
T 2rep_A 257 LQISGEHSSR--GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKE-SHVPYRNSKL 333 (376)
T ss_dssp EEEEEEESSS--CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTC-SCCCGGGSHH
T ss_pred EEEEEEecCC--CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCC-CccCCcCCHH
Confidence 9999876543 345679999999999999 5688888 999999999999999999999999864 6999999999
Q ss_pred chhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhccc
Q 001324 376 TRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRV 418 (1100)
Q Consensus 376 T~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~rak~i 418 (1100)
||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 334 T~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 334 TYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999864
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5.8e-82 Score=719.13 Aligned_cols=320 Identities=33% Similarity=0.506 Sum_probs=260.7
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEee-C---CC-EEEecCC---CCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWYA-D---GD-KIVRNEY---NPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~---~~-~~~~~~~---~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
-+|+|+|+|||||+.+.|...+..+.+.. + +. .+.+... .....|.||+||+++++|++||+.+ .|+|+++
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~ 81 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSS 81 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGG
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHH
Confidence 46899999999999999987766655532 1 22 2222211 1245799999999999999999975 6899999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCCCCC-----
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTG----- 242 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~~~~----- 242 (1100)
|+|||+||||||||||||||||+|+ ++|||||++++||..+... .+..|.|+|||+|||||+|+|||++..
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 9999999999999999999999996 4699999999999998753 356899999999999999999998642
Q ss_pred ------CcceEEeCC--CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCc
Q 001324 243 ------QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1100)
Q Consensus 243 ------~~l~i~e~~--~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 314 (1100)
..+.|++++ .|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.+... +.
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~ 237 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHT--GE 237 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTT--CC
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCC--CC
Confidence 467788775 47999999999999999999999999999999999999999999999999999876543 34
Q ss_pred eEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCC--CCcCCCCCccchhhcccCCCCcccee
Q 001324 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSL 391 (1100)
Q Consensus 315 ~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~--~~iPyRdSkLT~lL~dsLgGns~t~~ 391 (1100)
...|+|+||||||||| .+++++|.|++|+.+||+||++||+||.+|++++. .|||||||||||||||+|||||+|+|
T Consensus 238 ~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~m 317 (349)
T 3t0q_A 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLM 317 (349)
T ss_dssp EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEE
T ss_pred eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEE
Confidence 5789999999999999 67899999999999999999999999999987543 59999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001324 392 ICTVTPASSSMEETHNTLKFASRAKRVEIYA 422 (1100)
Q Consensus 392 I~~isp~~~~~~eTl~TL~fa~rak~i~~~~ 422 (1100)
||||||+..+++||++||+||+|+++|+..+
T Consensus 318 i~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 318 FVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998653
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=5.4e-82 Score=722.39 Aligned_cols=315 Identities=37% Similarity=0.555 Sum_probs=255.9
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCC----C-----CCcceecceecCCCCChhHHHhhhhHHHHH
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~----~-----~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~ 167 (1100)
..++|+|+|||||+++.|...+...++. .+...+++... . ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 49 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~ 128 (387)
T 2heh_A 49 EEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 128 (387)
T ss_dssp CCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHH
Confidence 3789999999999999998777654443 33444432211 1 235799999999999999999999999999
Q ss_pred HHhcCCceeEEeeccCCCCCccccCCCC------CCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCC
Q 001324 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1100)
Q Consensus 168 ~~l~G~n~ti~aYGqtgSGKT~Tm~G~~------~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~ 239 (1100)
++|+|||+||||||||||||||||+|+. ..+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCC
Confidence 9999999999999999999999999963 56899999999999998643 356899999999999999999999
Q ss_pred CCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEe
Q 001324 240 PTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1100)
Q Consensus 240 ~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s 318 (1100)
+. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|... ....|
T Consensus 209 ~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------~~~~s 280 (387)
T 2heh_A 209 KK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-------GRMHG 280 (387)
T ss_dssp TT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-------SSEEE
T ss_pred CC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-------Ceeee
Confidence 75 479999998 5799999999999999999999999999999999999999999999999999864 23679
Q ss_pred eeEEEecCCCCCc-ccc-cchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccc-CCCCccceeEEee
Q 001324 319 QLNLIDLAGSESS-KTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSGHGHVSLICTV 395 (1100)
Q Consensus 319 ~L~lVDLAGsE~~-~~~-~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~ds-LgGns~t~~I~~i 395 (1100)
+|+|||||||||. +++ +.|.+++|+.+||+||++||+||.+|++++ .|||||||||||||||+ |||||+|+|||||
T Consensus 281 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~i 359 (387)
T 2heh_A 281 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATI 359 (387)
T ss_dssp EEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEE
T ss_pred EEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEEe
Confidence 9999999999994 444 567888999999999999999999999854 69999999999999999 6999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccc
Q 001324 396 TPASSSMEETHNTLKFASRAKRVEIY 421 (1100)
Q Consensus 396 sp~~~~~~eTl~TL~fa~rak~i~~~ 421 (1100)
||+..+++||++||+||+|||+|++.
T Consensus 360 sP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 360 SPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999864
No 22
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=9.1e-82 Score=716.23 Aligned_cols=320 Identities=32% Similarity=0.497 Sum_probs=263.2
Q ss_pred CCCEEEEEEeCCCCh-hhhhcCCeEEEee-C---CC-EEEec---CCCCCcceecceecCCCCChhHHHhhhhHHHHHHH
Q 001324 99 GDSISVTIRFRPLSE-REFQRGDEIAWYA-D---GD-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAA 169 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~-~E~~~~~~~~~~~-~---~~-~~~~~---~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~ 169 (1100)
+++|+|+|||||+++ .|......+.+.. + +. .+... .....+.|.||+||+++++|++||+.+ .|+|+++
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 589999999999987 4432222222221 1 22 22222 223456899999999999999999985 6999999
Q ss_pred hcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCCCCCC----
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQ---- 243 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~~~~~---- 243 (1100)
|+|||+||||||||||||||||+|+ ++|||||++++||..|... .+..|.|+|||+|||||+|+|||++...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 4799999999999999753 3568999999999999999999987643
Q ss_pred -----cceEEeCC--CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceE
Q 001324 244 -----NLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVI 316 (1100)
Q Consensus 244 -----~l~i~e~~--~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~ 316 (1100)
.+.|++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|....... +...
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~ 236 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT--GAHS 236 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC----CCEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC--Ccee
Confidence 47788765 57899999999999999999999999999999999999999999999999998875432 3457
Q ss_pred EeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCC--CCCcCCCCCccchhhcccCCCCccceeEE
Q 001324 317 FSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGK--ASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1100)
Q Consensus 317 ~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~--~~~iPyRdSkLT~lL~dsLgGns~t~~I~ 393 (1100)
.|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 89999999999999 6689999999999999999999999999999865 47999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001324 394 TVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1100)
Q Consensus 394 ~isp~~~~~~eTl~TL~fa~rak~i~~~~~ 423 (1100)
||||+..+++||++||+||+||++|++.+.
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999987653
No 23
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=8.9e-82 Score=717.95 Aligned_cols=320 Identities=31% Similarity=0.456 Sum_probs=269.1
Q ss_pred CEEEEEEeCCCChhhhhcCCeEE-EeeCCCEEEecCC---------CCCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001324 101 SISVTIRFRPLSEREFQRGDEIA-WYADGDKIVRNEY---------NPATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1100)
Q Consensus 101 ~i~V~vRvRP~~~~E~~~~~~~~-~~~~~~~~~~~~~---------~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l 170 (1100)
+|+|+|||||+++.|...+...+ ...++.++.+... .....|.||+||+++++|++||+.++.|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 59999999999999987765433 3344555543221 1235799999999999999999999999999999
Q ss_pred c-CCceeEEeeccCCCCCccccCCCC-----CCCCchhHHHHHHHHHhhc-CCCceEEEEEeeeeeecceeeecCCCCCC
Q 001324 171 E-GVNGTVFAYGVTSSGKTHTMHGDQ-----NSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1100)
Q Consensus 171 ~-G~n~ti~aYGqtgSGKT~Tm~G~~-----~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIyne~i~DLL~~~~~ 243 (1100)
+ |||+||||||||||||||||+|+. ..+|||||++++||..+.. ..+..|.|+|||+|||||+|+|||++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 6 999999999999999999999974 6799999999999999975 3456899999999999999999998764
Q ss_pred cceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEE
Q 001324 244 NLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNL 322 (1100)
Q Consensus 244 ~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~l 322 (1100)
.+.+++++ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.... .....|+|+|
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~-----~~~~~skL~l 234 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-----KNTSLGKIAF 234 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc-----CCcceeEEEE
Confidence 56778887 68999999999999999999999999999999999999999999999999998643 2356799999
Q ss_pred EecCCCCC-cccccch-hhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCC
Q 001324 323 IDLAGSES-SKTETTG-LRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASS 400 (1100)
Q Consensus 323 VDLAGsE~-~~~~~~g-~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~ 400 (1100)
|||||||| .++++.| .+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|+|||||||+..
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~ 313 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTIS 313 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcc
Confidence 99999999 5566665 578899999999999999999998764 69999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccccccccc
Q 001324 401 SMEETHNTLKFASRAKRVEIYASRNKI 427 (1100)
Q Consensus 401 ~~~eTl~TL~fa~rak~i~~~~~~n~~ 427 (1100)
+++||++||+||+|||+|+|.+..|+.
T Consensus 314 ~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 314 CCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp GHHHHHHHHHHHHHHCC----------
T ss_pred cHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999997766654
No 24
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=8.7e-82 Score=724.60 Aligned_cols=317 Identities=36% Similarity=0.543 Sum_probs=260.0
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEe-eCCCEEEecCC----C-----CCcceecceecCCCCChhHHHhhhhHHHHH
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWY-ADGDKIVRNEY----N-----PATAYAFDRVFGPHANSQEVYDVAARPVVK 167 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~-~~~~~~~~~~~----~-----~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~ 167 (1100)
..++|+|+|||||++..|...+...++. .++..+++... . ..+.|.||+||+++++|++||+.++.|+|+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 3789999999999999998777654443 34444433211 1 135799999999999999999999999999
Q ss_pred HHhcCCceeEEeeccCCCCCccccCCCC------CCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCC
Q 001324 168 AAMEGVNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1100)
Q Consensus 168 ~~l~G~n~ti~aYGqtgSGKT~Tm~G~~------~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~ 239 (1100)
++|+|||+||||||||||||||||+|+. ..+|||||++++||..+... .+..|.|+|||+|||||+|+|||+
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence 9999999999999999999999999963 46899999999999998643 356899999999999999999999
Q ss_pred CCCCcceEEeCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEe
Q 001324 240 PTGQNLRVREDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFS 318 (1100)
Q Consensus 240 ~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s 318 (1100)
+. ..+.|++|+ .|++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|.|.... ...|
T Consensus 229 ~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-------~~~s 300 (410)
T 1v8k_A 229 KK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-------RLHG 300 (410)
T ss_dssp TT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS-------SEEE
T ss_pred CC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC-------ccee
Confidence 75 479999998 67999999999999999999999999999999999999999999999999998641 3679
Q ss_pred eeEEEecCCCCC-cccc-cchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhccc-CCCCccceeEEee
Q 001324 319 QLNLIDLAGSES-SKTE-TTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSS-LSGHGHVSLICTV 395 (1100)
Q Consensus 319 ~L~lVDLAGsE~-~~~~-~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~ds-LgGns~t~~I~~i 395 (1100)
+|+||||||||| .+++ +.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+ |||||+|+|||||
T Consensus 301 kL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~i 379 (410)
T 1v8k_A 301 KFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379 (410)
T ss_dssp EEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred EEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEe
Confidence 999999999999 4454 567888999999999999999999999754 69999999999999999 6999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccccc
Q 001324 396 TPASSSMEETHNTLKFASRAKRVEIYAS 423 (1100)
Q Consensus 396 sp~~~~~~eTl~TL~fa~rak~i~~~~~ 423 (1100)
||+..+++||++||+||+|||+|..+|.
T Consensus 380 SP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 380 SPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999987653
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.9e-81 Score=726.32 Aligned_cols=325 Identities=34% Similarity=0.548 Sum_probs=270.2
Q ss_pred CCCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCC-------CCcceecceecCCCCChhHHHhhhhHHHHHHHh
Q 001324 98 SGDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYN-------PATAYAFDRVFGPHANSQEVYDVAARPVVKAAM 170 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~-------~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l 170 (1100)
.+|+|+|+|||||+.+.|...+...+...++.++.+.... ....|.||+||+++++|++||+. +.|+|+++|
T Consensus 57 l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l 135 (412)
T 3u06_A 57 LRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSAL 135 (412)
T ss_dssp HTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHH
T ss_pred hCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHH
Confidence 4689999999999999997666555555666665443221 24679999999999999999985 569999999
Q ss_pred cCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCCCCCCcceEE
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLDPTGQNLRVR 248 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~i~ 248 (1100)
+|||+||||||||||||||||+|++.++|||||++++||..|... .+..|.|+|||+|||||.|+|||++....+.|+
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 999999999999999999999999999999999999999999753 357999999999999999999999877766666
Q ss_pred --eCC-CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEEec
Q 001324 249 --EDA-QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLIDL 325 (1100)
Q Consensus 249 --e~~-~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lVDL 325 (1100)
+++ .|+||.|++++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|....... .....|+|+||||
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~~~~kL~lVDL 293 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK--QEISVGSINLVDL 293 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT--TEEEEEEEEEEEC
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC--CCEEEEEEEEEEC
Confidence 444 57999999999999999999999999999999999999999999999999998876543 4567899999999
Q ss_pred CCCCCcccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHH
Q 001324 326 AGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEET 405 (1100)
Q Consensus 326 AGsE~~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eT 405 (1100)
||||+.+ .|.|++|+.+||+||++||+||.+|+.+. .|||||||||||||||+|||||+|+|||||||+..+++||
T Consensus 294 AGSEr~~---~~~rl~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ET 369 (412)
T 3u06_A 294 AGSESPK---TSTRMTETKNINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQES 369 (412)
T ss_dssp CCCCC-------------CTTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcCC---ccchhHhHHHHhHHHHHHHHHHHHHhccC-CCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHH
Confidence 9999864 46899999999999999999999999854 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc-ccccccccC
Q 001324 406 HNTLKFASRAKRVEI-YASRNKIID 429 (1100)
Q Consensus 406 l~TL~fa~rak~i~~-~~~~n~~~~ 429 (1100)
++||+||+|++.|+. .+++|.+.+
T Consensus 370 l~TLrfA~rv~~i~~~~~~~n~~~~ 394 (412)
T 3u06_A 370 VKSLRFAASVNSCKMTKAKRNRYLN 394 (412)
T ss_dssp HHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHhhcccccccccccCC
Confidence 999999999999984 445565443
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-80 Score=716.55 Aligned_cols=321 Identities=32% Similarity=0.503 Sum_probs=268.6
Q ss_pred CCCCEEEEEEeCCCChh-hhhcCCeEEEe-eCC---C-EEEec---CCCCCcceecceecCCCCChhHHHhhhhHHHHHH
Q 001324 98 SGDSISVTIRFRPLSER-EFQRGDEIAWY-ADG---D-KIVRN---EYNPATAYAFDRVFGPHANSQEVYDVAARPVVKA 168 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~~~-E~~~~~~~~~~-~~~---~-~~~~~---~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~ 168 (1100)
.+|+|+|+|||||+.+. |......+.+. .+. . .+... .....+.|.||+||+++++|++||+.+ .|+|++
T Consensus 57 lkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~ 135 (403)
T 4etp_A 57 LRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQS 135 (403)
T ss_dssp HHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHH
T ss_pred cCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHHH
Confidence 46899999999999877 33333333332 221 1 12211 122346799999999999999999975 589999
Q ss_pred HhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc--CCCceEEEEEeeeeeecceeeecCCCCC----
Q 001324 169 AMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD--TPGREFLLRVSYLEIYNEVINDLLDPTG---- 242 (1100)
Q Consensus 169 ~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIyne~i~DLL~~~~---- 242 (1100)
+|+|||+||||||||||||||||+|+ ++|||||++++||..|.. ..+..|.|+|||+|||||+|+|||++..
T Consensus 136 ~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 136 SLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999996 469999999999999975 4467999999999999999999998753
Q ss_pred -----CcceEEeCC--CCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCce
Q 001324 243 -----QNLRVREDA--QGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGV 315 (1100)
Q Consensus 243 -----~~l~i~e~~--~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~ 315 (1100)
..+.|++++ .|++|.|++++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|...+... +..
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~~~ 291 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT--GAH 291 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTT--CCE
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCC--CCe
Confidence 356787776 46899999999999999999999999999999999999999999999999999876543 345
Q ss_pred EEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCC--CCcCCCCCccchhhcccCCCCccceeE
Q 001324 316 IFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKA--SHVPYRDSKLTRLLQSSLSGHGHVSLI 392 (1100)
Q Consensus 316 ~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~--~~iPyRdSkLT~lL~dsLgGns~t~~I 392 (1100)
..|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|+||
T Consensus 292 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi 371 (403)
T 4etp_A 292 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 371 (403)
T ss_dssp EEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEE
T ss_pred eEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEE
Confidence 679999999999999 67899999999999999999999999999987543 599999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccccc
Q 001324 393 CTVTPASSSMEETHNTLKFASRAKRVEIYAS 423 (1100)
Q Consensus 393 ~~isp~~~~~~eTl~TL~fa~rak~i~~~~~ 423 (1100)
|||||+..+++||++||+||+|+++|++.+.
T Consensus 372 ~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 372 VNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999987663
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.3e-79 Score=696.02 Aligned_cols=310 Identities=29% Similarity=0.470 Sum_probs=245.3
Q ss_pred CCCCCCEEEEEEeCCCChhhhhcCCeEEEee---CCCEEEecCCCCCcceecceecCCCCChhHHHhhhhHHHHHHHhcC
Q 001324 96 QRSGDSISVTIRFRPLSEREFQRGDEIAWYA---DGDKIVRNEYNPATAYAFDRVFGPHANSQEVYDVAARPVVKAAMEG 172 (1100)
Q Consensus 96 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~---~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G 172 (1100)
....++|+|+|||||+.+.|......++..+ ++..+... .+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus 18 ~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~----~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 18 GAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp -CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec----CcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 3556899999999999987743333333333 24444432 4689999999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCccccCCCC------CCCCchhHHHHHHHHHhhcCC---CceEEEEEeeeeeecceeeecCCCCCC
Q 001324 173 VNGTVFAYGVTSSGKTHTMHGDQ------NSPGIIPLAIKDVFSIIQDTP---GREFLLRVSYLEIYNEVINDLLDPTGQ 243 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~G~~------~~~Giipr~~~~lF~~i~~~~---~~~~~v~vS~~EIyne~i~DLL~~~~~ 243 (1100)
||+||||||||||||||||+|++ .++|||||++++||+.|.... ...|.|+|||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 568999999999999997543 347999999999999999999987653
Q ss_pred cceEEeCCCCcEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCceEEeeeEEE
Q 001324 244 NLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDGVIFSQLNLI 323 (1100)
Q Consensus 244 ~l~i~e~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~s~L~lV 323 (1100)
... .+..+.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+. ...|+|+||
T Consensus 174 ~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--------~~~skl~lV 240 (344)
T 3dc4_A 174 MPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK--------THHSRMNIV 240 (344)
T ss_dssp SBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS--------SCEEEEEEE
T ss_pred Ccc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec--------CcEEEEEEE
Confidence 221 2334568999999999999999999999999999999999999999999999752 246999999
Q ss_pred ecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCH
Q 001324 324 DLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSM 402 (1100)
Q Consensus 324 DLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~ 402 (1100)
||||||| .++++.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+|||||+|+|||||||+..++
T Consensus 241 DLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~ 319 (344)
T 3dc4_A 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319 (344)
T ss_dssp ECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGH
T ss_pred ECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhH
Confidence 9999999 6789999999999999999999999999999875 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccc
Q 001324 403 EETHNTLKFASRAKRVEIYAS 423 (1100)
Q Consensus 403 ~eTl~TL~fa~rak~i~~~~~ 423 (1100)
+||++||+||+||+.....+.
T Consensus 320 ~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 320 SETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999998875543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.6e-73 Score=713.62 Aligned_cols=317 Identities=34% Similarity=0.550 Sum_probs=251.6
Q ss_pred CCCCEEEEEEeC----CCChhhhhcCCeEEEeeCC--------CEEEec-C---CCCCcceecceecCCCCChhHHHhhh
Q 001324 98 SGDSISVTIRFR----PLSEREFQRGDEIAWYADG--------DKIVRN-E---YNPATAYAFDRVFGPHANSQEVYDVA 161 (1100)
Q Consensus 98 ~~~~i~V~vRvR----P~~~~E~~~~~~~~~~~~~--------~~~~~~-~---~~~~~~f~FD~Vf~~~~~q~~vy~~~ 161 (1100)
..+.++|||||| |....|...+..++..... ..+++. . ....+.|.||+||+++++|++||+.+
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~ 451 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL 451 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH
Confidence 458999999999 5555554455443332211 122221 1 12346799999999999999999975
Q ss_pred hHHHHHHHhcCCceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeeecCC
Q 001324 162 ARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVINDLLD 239 (1100)
Q Consensus 162 ~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~DLL~ 239 (1100)
.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.|... .+..|.|+|||+|||||+|+|||+
T Consensus 452 -~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~ 528 (715)
T 4h1g_A 452 -SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLN 528 (715)
T ss_dssp -HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSS
T ss_pred -HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCC
Confidence 58999999999999999999999999999994 5799999999999999753 456899999999999999999998
Q ss_pred CC---CCcceEEeCC-CC-cEeeCceEEEeCChHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCCc
Q 001324 240 PT---GQNLRVREDA-QG-TYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYDG 314 (1100)
Q Consensus 240 ~~---~~~l~i~e~~-~g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~ 314 (1100)
|. ...+.++++. .| ++|.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+..... ..
T Consensus 529 ~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~--~~ 606 (715)
T 4h1g_A 529 PKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLT--KE 606 (715)
T ss_dssp CCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTT--CC
T ss_pred CCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCC--CC
Confidence 75 3456777655 45 899999999999999999999999999999999999999999999999999876543 34
Q ss_pred eEEeeeEEEecCCCCC-cccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEE
Q 001324 315 VIFSQLNLIDLAGSES-SKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLIC 393 (1100)
Q Consensus 315 ~~~s~L~lVDLAGsE~-~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~ 393 (1100)
...|+|+||||||||| .++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|||
T Consensus 607 ~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~ 686 (715)
T 4h1g_A 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFV 686 (715)
T ss_dssp EEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEE
T ss_pred EeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEE
Confidence 6789999999999999 668999999999999999999999999999988888999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHHHHhcccc
Q 001324 394 TVTPASSSMEETHNTLKFASRAKRVE 419 (1100)
Q Consensus 394 ~isp~~~~~~eTl~TL~fa~rak~i~ 419 (1100)
||||+..+++||++||+||+|||+|+
T Consensus 687 ~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 687 NISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=5.2e-31 Score=242.97 Aligned_cols=99 Identities=42% Similarity=0.622 Sum_probs=95.1
Q ss_pred hhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhccccccc
Q 001324 343 GSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYA 422 (1100)
Q Consensus 343 ~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~ 422 (1100)
+.+||+||++||+||.+|++++..|||||||||||||+|+|||||+|+|||||||+..+++||++||+||+||+.|++.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 35799999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHHHH
Q 001324 423 SRNKIIDEKSLIKKYQREI 441 (1100)
Q Consensus 423 ~~n~~~~~~~~~~~lq~eI 441 (1100)
.+|+..+...++++|++||
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999999887
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=4e-28 Score=231.74 Aligned_cols=97 Identities=42% Similarity=0.624 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHHHHHHHHHHhccccccccccc
Q 001324 347 NKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETHNTLKFASRAKRVEIYASRNK 426 (1100)
Q Consensus 347 N~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl~TL~fa~rak~i~~~~~~n~ 426 (1100)
|+||++||+||.+|++++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHH
Q 001324 427 IIDEKSLIKKYQREISS 443 (1100)
Q Consensus 427 ~~~~~~~~~~lq~eI~~ 443 (1100)
..+...+++.|++++..
T Consensus 81 ~~~~~~l~~~~~~e~~~ 97 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEK 97 (117)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 98888777777666543
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.7e-24 Score=229.72 Aligned_cols=262 Identities=10% Similarity=0.116 Sum_probs=171.0
Q ss_pred CCCCEEEEEEeCCCC-hhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCCChh--HHHhhhhHHHHHHHhc-CC
Q 001324 98 SGDSISVTIRFRPLS-EREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHANSQ--EVYDVAARPVVKAAME-GV 173 (1100)
Q Consensus 98 ~~~~i~V~vRvRP~~-~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~q~--~vy~~~~~~lv~~~l~-G~ 173 (1100)
-+|+|||+|||||.. + +...+.++++. +.+. . ..+.|.||+||++...|+ +||+. +.++|+.+|+ ||
T Consensus 22 LKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v~-~-~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 22 QKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQG-L-SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp HHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEET-T-TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred hhCceEEEEEeccccCC-----ccceeecCccc-eeec-C-CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 359999999999964 3 22224444444 4332 2 347899999999999999 99996 8899999999 99
Q ss_pred ceeEEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhc-CCCceEEEEEeeeeee-cceeeecCCC--CCCcceEEe
Q 001324 174 NGTVFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQD-TPGREFLLRVSYLEIY-NEVINDLLDP--TGQNLRVRE 249 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIy-ne~i~DLL~~--~~~~l~i~e 249 (1100)
|+||||||||||||| ||++..+|..... .. ..|.+.+||+||| ||.++|||.. .+..+.|+.
T Consensus 93 NvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~ 158 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKL 158 (298)
T ss_dssp CEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEE
T ss_pred ceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEe
Confidence 999999999999999 9999999986643 22 7899999999999 9999999963 233667777
Q ss_pred CCC-CcEeeCceEEEeCC-hHHHHHHHHHHHhhcccCCCcccCCCCCceEEEEEEEEEeecCCCCC-ceEEeeeEEEecC
Q 001324 250 DAQ-GTYVEGIKEEVVLS-PGHALSFIAAGEEHRHVGSNNFNLLSSRSHTIFTLMIESSDHGDEYD-GVIFSQLNLIDLA 326 (1100)
Q Consensus 250 ~~~-g~~v~gl~~~~v~s-~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~-~~~~s~L~lVDLA 326 (1100)
+.. +++|.|++.+.|.+ ++|+..++.-+.. +..|. +.-.|+.+.+...+.....+ .-..--++|+.+.
T Consensus 159 ~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~ 229 (298)
T 2o0a_A 159 KFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELN 229 (298)
T ss_dssp EECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEEC
T ss_pred cCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeC
Confidence 764 56899999999999 8998877622211 11121 23445555555422111101 0011246777764
Q ss_pred CCCCcccccchhhhhhhhHHhhhHHHHHHHHHHhhcCCCCCcCCCCCccchhhcccCCCCccceeEEeeCCCCCCHHHHH
Q 001324 327 GSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSSMEETH 406 (1100)
Q Consensus 327 GsE~~~~~~~g~r~~E~~~IN~SL~~L~~vI~~L~~~~~~~iPyRdSkLT~lL~dsLgGns~t~~I~~isp~~~~~~eTl 406 (1100)
-. ++...|.+.+ ..+ -+-.|+++-+|+.-|. ..|.++++++.-+. +.-
T Consensus 230 ~~-------------------~~~~~l~~~~---~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~----~~~ 277 (298)
T 2o0a_A 230 NL-------------------KSIEQFDKSI---FKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSK----NVN 277 (298)
T ss_dssp SH-------------------HHHHHHHHHH---HTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGG----GHH
T ss_pred CH-------------------HHHHHHHhhc---ccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCC----chh
Confidence 21 1122333322 222 3456778888876664 56889999998643 223
Q ss_pred HHHHHHHHhcccccccc
Q 001324 407 NTLKFASRAKRVEIYAS 423 (1100)
Q Consensus 407 ~TL~fa~rak~i~~~~~ 423 (1100)
.-|..+++.+++.|...
T Consensus 278 ~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 278 KLLTISEEVQTQLCKRK 294 (298)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhhcccCccc
Confidence 47888888887776443
No 32
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.1e-12 Score=108.73 Aligned_cols=51 Identities=37% Similarity=0.862 Sum_probs=48.2
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeeccC
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAFT 1100 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f~ 1100 (1100)
+...|+||++..++++|+||||+++|..|+..+..||+||.+|..++++|.
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 456899999999999999999999999999999999999999999999984
No 33
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.17 E-value=2e-11 Score=108.71 Aligned_cols=47 Identities=30% Similarity=0.876 Sum_probs=45.9
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f 1099 (1100)
.|+||++...+++++||||.+||..|+..+..||+||.+|...+++|
T Consensus 20 ~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp BCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred EeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 79999999999999999999999999999999999999999999998
No 34
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.08 E-value=1.6e-11 Score=104.56 Aligned_cols=50 Identities=24% Similarity=0.599 Sum_probs=45.4
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcCC----CCCCCcccccceeecc
Q 001324 1050 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLACS----ECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~--pC~H~~~C~~C~~~~~----~CP~Cr~~i~~~i~~f 1099 (1100)
....|+||++++++++++ ||||+++|..|+..+. .||+||++|...+++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 455899999999998887 9999999999987765 8999999999999998
No 35
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=1.1e-10 Score=102.77 Aligned_cols=47 Identities=34% Similarity=0.913 Sum_probs=45.7
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f 1099 (1100)
.|.||++...+.+++||||.+||..|...+..||+||.+|...+++|
T Consensus 26 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 26 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp BCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 36
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=102.65 Aligned_cols=47 Identities=36% Similarity=0.949 Sum_probs=45.6
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f 1099 (1100)
.|+||++...+++++||||.+||..|......||+||.+|...+++|
T Consensus 27 ~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 27 LCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp SCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 79999999999999999999999999999999999999999999998
No 37
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.99 E-value=5.1e-11 Score=101.71 Aligned_cols=50 Identities=22% Similarity=0.640 Sum_probs=44.8
Q ss_pred cccccccccccccceEEe--CCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001324 1050 NSHMCKVCFESPTAAILL--PCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~--pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i~~f 1099 (1100)
+...|+||++++++++++ ||||.++|..|+..+ ..||+||++|...+++|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 345799999999999998 999999999998665 35999999999999998
No 38
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.80 E-value=7.6e-05 Score=80.78 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQ 630 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~L~~q 630 (1100)
||.++.++..+..++..+...+..|..+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEAD 28 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556666666666666666666544433
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.79 E-value=6e-09 Score=136.96 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=25.9
Q ss_pred hHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCcccc
Q 001324 155 QEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 155 ~~vy~~~~~~lv~~~l-~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
-.||. ++.....+++ .|.|-||+..|-+|||||.+.
T Consensus 150 PHi~a-ia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 150 PHIYA-IADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCHHH-HHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred ccHhh-hHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 35665 3333333333 799999999999999999763
No 40
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.74 E-value=3.6e-09 Score=119.80 Aligned_cols=48 Identities=33% Similarity=0.978 Sum_probs=46.3
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcCCCCCCCcccccceeecc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~~~CP~Cr~~i~~~i~~f 1099 (1100)
..|+||++...+++++||||.|||..|...+..||+||.+|...+++|
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 389999999999999999999999999999999999999999999998
No 41
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.65 E-value=3.4e-08 Score=129.87 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=9.5
Q ss_pred eeeEEEecCCCCCc
Q 001324 318 SQLNLIDLAGSESS 331 (1100)
Q Consensus 318 s~L~lVDLAGsE~~ 331 (1100)
..|.++|.+|.|..
T Consensus 458 ~~IgvLDi~GFE~f 471 (1184)
T 1i84_S 458 SFLGILDIAGFEIF 471 (1184)
T ss_dssp EEEEEEECCCCCCC
T ss_pred ceEEEeecCCcCCC
Confidence 34667788888753
No 42
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.58 E-value=0.00023 Score=76.85 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001324 925 KKVEESKRREEALENDL 941 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el 941 (1100)
..+..+..+...++..+
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (284)
T 1c1g_A 251 KSIDDLEDELYAQKLKY 267 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 43
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.34 E-value=1.4e-07 Score=93.19 Aligned_cols=44 Identities=36% Similarity=0.773 Sum_probs=37.9
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC----CCCCCCccccccee
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRL 1096 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i 1096 (1100)
..|+||++...+.+++||||. ||..|...+ ..||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 479999999999999999997 999996543 56999999997654
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.19 E-value=5.3e-07 Score=77.37 Aligned_cols=48 Identities=27% Similarity=0.864 Sum_probs=40.4
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhhhc----CCCCCCCcccccceeecc
Q 001324 1051 SHMCKVCFESPTA-AILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~-~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~i~~f 1099 (1100)
...|.||++...+ ++++||||. ||..|... ...||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4579999999888 588999999 99999643 367999999999877654
No 45
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=7.3e-07 Score=77.34 Aligned_cols=44 Identities=27% Similarity=0.870 Sum_probs=38.1
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
+...|.||++...+.+++||||. ||..|.... ..||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34589999999999999999999 999997654 569999999864
No 46
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=3.6e-07 Score=78.94 Aligned_cols=49 Identities=27% Similarity=0.776 Sum_probs=40.9
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeecc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i~~f 1099 (1100)
.+...|.||++...+ +++||||. ||..|.... ..||+||.+|.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345689999999999 88999999 999997644 56999999998766554
No 47
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=8.9e-07 Score=77.07 Aligned_cols=44 Identities=23% Similarity=0.788 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-------~~CP~Cr~~i~~ 1094 (1100)
....|.||++...+.+++||||. ||..|.... ..||+||.+|..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45589999999999999999999 999996433 369999999864
No 48
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=8.3e-07 Score=79.06 Aligned_cols=46 Identities=26% Similarity=0.708 Sum_probs=38.9
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccce
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDR 1095 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~ 1095 (1100)
.....|.||++...+.+++||||. ||..|.... ..||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence 345689999999999999999998 999996443 5699999998743
No 49
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.07 E-value=1e-06 Score=74.34 Aligned_cols=48 Identities=25% Similarity=0.696 Sum_probs=38.3
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCccccc--ceeecc
Q 001324 1051 SHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKIS--DRLFAF 1099 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~-------vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~--~~i~~f 1099 (1100)
...|.||++...+. +++||||. ||..|... ...||+||.++. ..+++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 34799999976654 88899999 99999643 357999999987 456665
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.06 E-value=1.8e-06 Score=98.31 Aligned_cols=47 Identities=32% Similarity=0.812 Sum_probs=41.1
Q ss_pred cccccccccccceEEeCCCCcccchhhhh-----cCCCCCCCcccccceeecc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSL-----ACSECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~-----~~~~CP~Cr~~i~~~i~~f 1099 (1100)
..|+||++...+.+++||||. ||..|.. ....||+||.+|.....++
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECS
T ss_pred CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEe
Confidence 589999999999999999999 8999964 3577999999998876653
No 51
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.05 E-value=1.6e-06 Score=71.02 Aligned_cols=44 Identities=34% Similarity=0.785 Sum_probs=36.0
Q ss_pred cccccccccccccc----eEEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~----~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
+...|.||++...+ ++++||||. ||..|.... ..||+||.+|.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34579999998655 889999997 999996443 679999998863
No 52
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.1e-06 Score=75.33 Aligned_cols=45 Identities=27% Similarity=0.798 Sum_probs=36.6
Q ss_pred ccccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~-------vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
.....|.||++...+. +++||||. ||..|... ...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456899999977665 88999997 99999644 3679999999864
No 53
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.03 E-value=1.1e-06 Score=76.09 Aligned_cols=49 Identities=24% Similarity=0.709 Sum_probs=38.2
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCcccccc--eeecc
Q 001324 1050 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKISD--RLFAF 1099 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~-------vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~--~i~~f 1099 (1100)
+...|.||++...+. +++||||. ||..|... ...||+||..+.. ..++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 455899999987665 88999998 99999643 3679999999873 34444
No 54
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=2.1e-06 Score=77.45 Aligned_cols=46 Identities=30% Similarity=0.639 Sum_probs=37.6
Q ss_pred Cccccccccccccccc----eEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001324 1048 DPNSHMCKVCFESPTA----AILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1094 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~----~vl~pC~H~~~C~~C~~~~-------~~CP~Cr~~i~~ 1094 (1100)
..+...|.||++...+ .+++||||. ||..|...+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3455689999999888 899999998 999996433 579999997643
No 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.01 E-value=2.1e-06 Score=75.81 Aligned_cols=45 Identities=33% Similarity=0.756 Sum_probs=38.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-----------CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----------CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-----------~~~CP~Cr~~i~~ 1094 (1100)
.....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 455689999999999999999998 99999753 3469999998854
No 56
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.00 E-value=2.4e-06 Score=73.44 Aligned_cols=49 Identities=29% Similarity=0.689 Sum_probs=38.5
Q ss_pred ccccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceeec
Q 001324 1049 PNSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLFA 1098 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~---~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~i~~ 1098 (1100)
.....|.||++.. ..++++||||. ||..|... ...||+||..|...++.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 3456899997654 56788999999 99999643 36799999999876654
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.99 E-value=1.8e-06 Score=71.25 Aligned_cols=44 Identities=34% Similarity=0.748 Sum_probs=37.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-CCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-SECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-~~CP~Cr~~i~~ 1094 (1100)
+...|.||++...+.+++||||. ||..|.... ..||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 44579999999999999999998 999997543 569999998763
No 58
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.9e-06 Score=73.75 Aligned_cols=47 Identities=26% Similarity=0.642 Sum_probs=38.7
Q ss_pred ccccccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCccccccee
Q 001324 1049 PNSHMCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISDRL 1096 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~i 1096 (1100)
.+...|.||++...+.+.+ ||||. ||..|... ...||+||..|...-
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456899999999988887 99998 99999643 367999999987643
No 59
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.97 E-value=3.6e-06 Score=75.23 Aligned_cols=44 Identities=25% Similarity=0.725 Sum_probs=37.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~----------~~~CP~Cr~~i~~ 1094 (1100)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999999999999999998 99999543 4679999998863
No 60
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=2e-06 Score=73.33 Aligned_cols=45 Identities=24% Similarity=0.596 Sum_probs=38.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i~~ 1094 (1100)
.....|.||++...+.+.+||||. ||..|... ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345689999999999999999999 99999642 3569999999865
No 61
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.96 E-value=3.8e-06 Score=81.16 Aligned_cols=41 Identities=32% Similarity=0.693 Sum_probs=36.1
Q ss_pred ccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i~~ 1094 (1100)
.|.||++...+.+++||||. ||..|... ...||+||.++..
T Consensus 54 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 54 QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp BCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 79999999999999999998 99999642 2479999999875
No 62
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.96 E-value=1.8e-06 Score=76.39 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=38.3
Q ss_pred ccccccccccccc--cceEEeC--CCCcccchhhhhcC-----CCCCCCcccccceeecc
Q 001324 1049 PNSHMCKVCFESP--TAAILLP--CRHFCLCKSCSLAC-----SECPICRTKISDRLFAF 1099 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~--~~~vl~p--C~H~~~C~~C~~~~-----~~CP~Cr~~i~~~i~~f 1099 (1100)
.+...|.||++.. .+.+++| |||. ||..|...+ ..||+||.++.....+|
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 3556899999966 3556777 9998 999996544 46999999998765444
No 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=3.9e-06 Score=74.99 Aligned_cols=44 Identities=34% Similarity=0.819 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhc----------CCCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----------CSECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~----------~~~CP~Cr~~i~~ 1094 (1100)
....|.||++...+.+++||||. ||..|... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 44589999999999999999998 99999643 4679999998873
No 64
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.92 E-value=5e-06 Score=68.02 Aligned_cols=43 Identities=33% Similarity=0.739 Sum_probs=34.9
Q ss_pred cccccccccccccc---eEEeC-CCCcccchhhhhcC----CCCCCCccccc
Q 001324 1050 NSHMCKVCFESPTA---AILLP-CRHFCLCKSCSLAC----SECPICRTKIS 1093 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~---~vl~p-C~H~~~C~~C~~~~----~~CP~Cr~~i~ 1093 (1100)
+...|.||++...+ ++.+| |||. ||..|.... ..||+||..|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 44589999998766 77887 9998 999996543 56999999874
No 65
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.91 E-value=3.3e-06 Score=77.02 Aligned_cols=45 Identities=29% Similarity=0.761 Sum_probs=36.1
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001324 1050 NSHMCKVCFESPTA---AILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1095 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~---~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~ 1095 (1100)
....|.||++.... ++.+||||. ||..|... ...||+||..|...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 44589999987666 888999998 99999643 35699999988653
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.90 E-value=5.1e-06 Score=72.63 Aligned_cols=45 Identities=27% Similarity=0.757 Sum_probs=37.3
Q ss_pred CccccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCccccc
Q 001324 1048 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKIS 1093 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~p-C~H~~~C~~C~~~~------~~CP~Cr~~i~ 1093 (1100)
......|.||++...+.+.+| |||. ||..|.... ..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345568999999999999999 9998 999995332 47999999754
No 67
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.89 E-value=5.4e-06 Score=78.39 Aligned_cols=41 Identities=34% Similarity=0.936 Sum_probs=35.3
Q ss_pred ccccccccccceEEeCCCCcccchhhhhcC-------CCCCCCcccccc
Q 001324 1053 MCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-------~~CP~Cr~~i~~ 1094 (1100)
.|.||++...+.+++||||. ||..|.... ..||+||.++..
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 79999999999999999998 999995432 379999998764
No 68
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.88 E-value=4.6e-06 Score=73.54 Aligned_cols=45 Identities=31% Similarity=0.803 Sum_probs=35.0
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccce
Q 001324 1050 NSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDR 1095 (1100)
Q Consensus 1050 ~~~~C~iC~~~~---~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~ 1095 (1100)
....|.||++.. ..++++||+|. ||..|... ...||+||..|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 455899996653 55677899998 99999643 36799999998754
No 69
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=4.4e-06 Score=73.13 Aligned_cols=44 Identities=30% Similarity=0.672 Sum_probs=34.5
Q ss_pred ccccccccccccc---ceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPT---AAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~---~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
....|.||++... .++.+||+|. ||..|... ...||+||..|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4458999997544 3588899998 99999643 3679999998864
No 70
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.85 E-value=5.6e-06 Score=75.49 Aligned_cols=44 Identities=27% Similarity=0.782 Sum_probs=37.3
Q ss_pred CccccccccccccccceEEeC-CCCcccchhhhhcC------CCCCCCcccc
Q 001324 1048 DPNSHMCKVCFESPTAAILLP-CRHFCLCKSCSLAC------SECPICRTKI 1092 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~p-C~H~~~C~~C~~~~------~~CP~Cr~~i 1092 (1100)
......|.||++...+.+++| |||. ||..|.... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345668999999999999999 9999 999996432 4799999986
No 71
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=5.7e-06 Score=72.16 Aligned_cols=47 Identities=23% Similarity=0.632 Sum_probs=36.8
Q ss_pred cccccccccccc---cceEEeCCCCcccchhhhhc----CCCCCCCcccccceee
Q 001324 1050 NSHMCKVCFESP---TAAILLPCRHFCLCKSCSLA----CSECPICRTKISDRLF 1097 (1100)
Q Consensus 1050 ~~~~C~iC~~~~---~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~~i~ 1097 (1100)
....|.||++.. ..++++||+|. ||..|... ...||+||.+|.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 445899999874 45667799998 99999643 3579999999877554
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.82 E-value=4.3e-06 Score=71.07 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=32.5
Q ss_pred cccccccc-cccce----EEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1052 HMCKVCFE-SPTAA----ILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~-~~~~~----vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
..|.||++ ...+. +++||||. ||..|.... ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 33333 67899998 999996443 569999999864
No 73
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=74.97 Aligned_cols=41 Identities=32% Similarity=0.714 Sum_probs=35.7
Q ss_pred ccccccccccceEE-eCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1053 MCKVCFESPTAAIL-LPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl-~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
.|.||++...+.++ +||||. ||..|.... ..||+||.++..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 79999999999999 999999 999996432 579999998753
No 74
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.78 E-value=8.1e-06 Score=77.75 Aligned_cols=42 Identities=38% Similarity=0.947 Sum_probs=36.5
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
..|.||++...+.+.+||||. ||..|...+ ..||+||..+..
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 479999999999999999998 999997554 369999998863
No 75
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.76 E-value=7e-06 Score=82.10 Aligned_cols=43 Identities=30% Similarity=0.719 Sum_probs=37.0
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccce
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISDR 1095 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~~ 1095 (1100)
..|.||++...+.+++||||. ||..|.... ..||+||.++...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999999999999999998 999996433 3699999998754
No 76
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.75 E-value=9.4e-06 Score=71.54 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=38.0
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i~~ 1094 (1100)
+....|.||++-..+.|++||||. ||..|... ...||+||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 455689999999999999999999 99999532 3569999999853
No 77
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.71 E-value=9.3e-06 Score=75.12 Aligned_cols=41 Identities=29% Similarity=0.850 Sum_probs=35.4
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1053 MCKVCFESPTAAILL-PCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
.|.||++...+.+++ ||||. ||..|... ...||+||..+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 24 RCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp BCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 799999999999888 99998 99999643 2569999998874
No 78
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.70 E-value=1.2e-05 Score=75.74 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=37.4
Q ss_pred ccccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCcccccce
Q 001324 1051 SHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKISDR 1095 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~ 1095 (1100)
...|.||++...+.+.+ ||||. ||..|.... ..||+||..+...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCcccccc
Confidence 44899999999999998 99998 999996433 6799999998753
No 79
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.70 E-value=9e-06 Score=82.62 Aligned_cols=42 Identities=31% Similarity=0.868 Sum_probs=35.6
Q ss_pred ccccccccccccceEEe-CCCCcccchhhhhc-----CCCCCCCccccc
Q 001324 1051 SHMCKVCFESPTAAILL-PCRHFCLCKSCSLA-----CSECPICRTKIS 1093 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~-----~~~CP~Cr~~i~ 1093 (1100)
...|.||++...+.+.+ ||||. ||..|... ...||+||.++.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 34899999999999887 99998 99999643 356999999985
No 80
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=2.1e-05 Score=66.28 Aligned_cols=39 Identities=23% Similarity=0.815 Sum_probs=32.8
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc-------CCCCCCC
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA-------CSECPIC 1088 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-------~~~CP~C 1088 (1100)
.....|.||++...+.+++||||. ||..|... ...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345689999999999999999999 99999532 3469998
No 81
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.6e-05 Score=65.68 Aligned_cols=38 Identities=32% Similarity=0.883 Sum_probs=32.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC-------CCCCCC
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-------SECPIC 1088 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-------~~CP~C 1088 (1100)
....|.||++...+.+++||||. ||..|.... ..||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 45689999999999999999999 999995432 569998
No 82
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.61 E-value=2e-05 Score=75.25 Aligned_cols=40 Identities=30% Similarity=0.845 Sum_probs=36.0
Q ss_pred ccccccccccceEEe-CCCCcccchhhhhcC--CCCCCCccccc
Q 001324 1053 MCKVCFESPTAAILL-PCRHFCLCKSCSLAC--SECPICRTKIS 1093 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~~--~~CP~Cr~~i~ 1093 (1100)
.|.||++...+.+++ ||||. ||..|.... ..||+||.++.
T Consensus 24 ~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 24 RCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp SCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 799999999999998 99998 999997655 57999999885
No 83
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.57 E-value=2.6e-05 Score=74.68 Aligned_cols=45 Identities=24% Similarity=0.707 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
.....|.||++...+.+.+||||. ||..|.... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 345689999999999999999998 999996443 489999998865
No 84
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.43 E-value=2.8e-05 Score=73.83 Aligned_cols=43 Identities=30% Similarity=0.692 Sum_probs=33.0
Q ss_pred cccccccccccc------------------eEEeCCCCcccchhhhhc---------CCCCCCCcccccce
Q 001324 1052 HMCKVCFESPTA------------------AILLPCRHFCLCKSCSLA---------CSECPICRTKISDR 1095 (1100)
Q Consensus 1052 ~~C~iC~~~~~~------------------~vl~pC~H~~~C~~C~~~---------~~~CP~Cr~~i~~~ 1095 (1100)
..|.||++.... ++++||+|. ||..|... ...||+||..+...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 479999997633 348899998 99999432 34699999987643
No 85
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.41 E-value=4.2e-05 Score=72.86 Aligned_cols=42 Identities=29% Similarity=0.714 Sum_probs=36.4
Q ss_pred cccccccccccceEEeCCCCcccchhhhhc-----CCCCCCCcccccc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLA-----CSECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i~~ 1094 (1100)
..|.||++...+.+.+||||. ||..|... ...||+||.++..
T Consensus 24 ~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 379999999999999999999 99999642 3579999999864
No 86
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.34 E-value=0.0001 Score=81.04 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=38.4
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
.+....|+||++-..+.|++||||. ||..|...+ ..||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456789999999999999999998 999995432 349999999863
No 87
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.32 E-value=7.1e-05 Score=69.39 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
+....|+||++-..+.|++||||. ||..|... ...||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 455689999999999999999998 99999533 3569999998764
No 88
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.29 E-value=9.2e-05 Score=66.50 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=38.2
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
+....|.||++-..+.|++||||. ||..|... ...||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 455689999999999999999998 99999533 3679999998754
No 89
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.27 E-value=9.8e-05 Score=68.20 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=37.8
Q ss_pred ccccccccccccccceEEeCCC-Ccccchhhhhc----CCCCCCCcccccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCR-HFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~-H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
+....|+||++-..+.|++||| |. ||..|... ...||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3456899999999999999999 98 99999543 3569999998764
No 90
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.25 E-value=0.00024 Score=72.65 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=40.4
Q ss_pred CCCCccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1045 GNGDPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1045 ~~~~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
....+....|+||++-..+.|++||||. ||..|...+ ..||+||.++..
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3455677899999999999999999998 999994322 359999998764
No 91
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.22 E-value=7.2e-05 Score=72.55 Aligned_cols=44 Identities=27% Similarity=0.810 Sum_probs=36.0
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhcC----CCCCCCcccccc
Q 001324 1050 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLAC----SECPICRTKISD 1094 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~-------vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~ 1094 (1100)
+...|.||++...+. +++||||. ||..|.... ..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 445899999987765 89999998 999996432 569999998874
No 92
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00011 Score=65.45 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=30.8
Q ss_pred cccccccccccc--------------eEEe-CCCCcccchhhhhc----CCCCCCCcccccc
Q 001324 1052 HMCKVCFESPTA--------------AILL-PCRHFCLCKSCSLA----CSECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~--------------~vl~-pC~H~~~C~~C~~~----~~~CP~Cr~~i~~ 1094 (1100)
..|.||++.... ++++ +|+|. ||..|... ...||+||.++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 368888886644 4444 59999 99999643 3569999998753
No 93
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.22 E-value=3.7e-05 Score=76.02 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=36.5
Q ss_pred ccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccc
Q 001324 1049 PNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKI 1092 (1100)
Q Consensus 1049 ~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i 1092 (1100)
.....|.||++-..+.|.+||||. ||..|...+ ..||+||.+|
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 355689999999999999999999 999996443 3699999975
No 94
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.07 E-value=0.00014 Score=70.37 Aligned_cols=49 Identities=24% Similarity=0.704 Sum_probs=38.3
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhhhc----CCCCCCCccccc--ceeecc
Q 001324 1050 NSHMCKVCFESPTAA-------ILLPCRHFCLCKSCSLA----CSECPICRTKIS--DRLFAF 1099 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~-------vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~--~~i~~f 1099 (1100)
+...|.||++..... ++.||||. ||..|... ...||+||..|. ..+++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 455899999976664 88899999 99999643 467999999876 345555
No 95
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.06 E-value=0.13 Score=52.35 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 797 EEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 797 ~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
..+..+++++..+....+.+...+.+|+..|.-|+...+..
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555555566666666666666666666666665543333
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.04 E-value=0.053 Score=76.57 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNA 828 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~ 828 (1100)
.++.+..+++++...++++.+.+.++.++.+.-..|+..-+....|...++.+++.....++.+..-+..|..|+.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3445555555555555555555555444444444444444444444444444444444444444444444444443
No 97
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.94 E-value=0.00031 Score=71.53 Aligned_cols=46 Identities=24% Similarity=0.662 Sum_probs=39.1
Q ss_pred CccccccccccccccceEEeCCCCcccchhhhhcC-----CCCCCCcccccc
Q 001324 1048 DPNSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC-----SECPICRTKISD 1094 (1100)
Q Consensus 1048 ~~~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~-----~~CP~Cr~~i~~ 1094 (1100)
..+...|.||++-..+.|.+||||. ||..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3455689999999999999999998 999996443 489999998875
No 98
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.91 E-value=0.095 Score=56.76 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN 713 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~ 713 (1100)
.+...+..+.++++.++.+++...+.+...+.+|..
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444444444444444444444444444433
No 99
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.82 E-value=0.01 Score=76.80 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=24.8
Q ss_pred HHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCccc
Q 001324 156 EVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 156 ~vy~~~~~~lv~~~l-~G~n~ti~aYGqtgSGKT~T 190 (1100)
.||. ++......++ .+.|-||+..|-+|||||.+
T Consensus 138 Hifa-iA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 138 HIFA-VAEEAYKQMARDERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp CHHH-HHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cHHH-HHHHHHHHHHhcCCCcEEEEcCCCCCCccch
Confidence 4665 3333333333 79999999999999999976
No 100
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.80 E-value=0.19 Score=51.15 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=67.7
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001324 707 LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 786 (1100)
Q Consensus 707 LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~ 786 (1100)
|+.+|..+ -..+++|+.++.+|..++..++.+. .....+....+..++.++..++.. +.
T Consensus 47 LE~eL~~~----Ek~~~~L~~~~~~L~~E~e~~k~K~----------~~~~~e~~~~~~~Lq~el~~l~~~-------~~ 105 (189)
T 2v71_A 47 LEAQLVQA----EQRNRDLQADNQRLKYEVEALKEKL----------EHQYAQSYKQVSVLEDDLSQTRAI-------KE 105 (189)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 34455555 5567777777777777776655321 122222333344444444444433 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 787 GLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLA 836 (1100)
Q Consensus 787 ~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~ 836 (1100)
.|...-+.|+..---+.--.+.+.+=++++..+++.+.-.|+-|+.||..
T Consensus 106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555556777888899999999999999999999985
No 101
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.78 E-value=0.00044 Score=64.70 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=31.5
Q ss_pred ccccccccccc------------------ceEEeCCCCcccchhhhhc----CCCCCCCccccc
Q 001324 1052 HMCKVCFESPT------------------AAILLPCRHFCLCKSCSLA----CSECPICRTKIS 1093 (1100)
Q Consensus 1052 ~~C~iC~~~~~------------------~~vl~pC~H~~~C~~C~~~----~~~CP~Cr~~i~ 1093 (1100)
..|.||++... .++++||+|. ||..|... ...||+||+.+.
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 36888877644 2577899998 99999644 356999999853
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.67 E-value=0.083 Score=74.63 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 757 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 757 ~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+..++.++..+++++++++.+-.+...+++.|+..-+..+.....+..+...|..|-..=.+.+..+..+...|-.+
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 33344444444444444444444444444445555555555555566666666666666666666666666555444
No 103
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.63 E-value=0.00088 Score=61.24 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=34.0
Q ss_pred cccccccccccccceEEeC-CCCcccchhhhhc----------CCCCCC--Cccc
Q 001324 1050 NSHMCKVCFESPTAAILLP-CRHFCLCKSCSLA----------CSECPI--CRTK 1091 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~p-C~H~~~C~~C~~~----------~~~CP~--Cr~~ 1091 (1100)
....|+||++-..+.|++| |||. ||..|... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4568999999999999997 9998 99999432 237999 9854
No 104
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=96.57 E-value=0.0059 Score=52.67 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----------hhHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 001324 901 ARKQREAALEAALAEKEFLEDEYR----------KKVEESKRREEALENDLANMWVLVAKLKKE 954 (1100)
Q Consensus 901 a~~~r~~aLE~el~~k~~~~~el~----------~~leEl~~~~~~L~~el~~~~~lv~kL~ke 954 (1100)
++++.+++|++||++|+-+.+||. ++++|+..+..+|..++.+++..+..|+.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 677999999999999999999986 899999999999999996666666665544
No 105
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.52 E-value=0.0004 Score=66.02 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred ccccccccccc------------------eEEeCCCCcccchhhhhcC----CCCCCCccccc
Q 001324 1053 MCKVCFESPTA------------------AILLPCRHFCLCKSCSLAC----SECPICRTKIS 1093 (1100)
Q Consensus 1053 ~C~iC~~~~~~------------------~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~ 1093 (1100)
.|.||++.... ++++||+|. ||..|.... ..||+||.++.
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 69999876543 345699999 999996543 56999999853
No 106
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.29 E-value=0.39 Score=47.80 Aligned_cols=75 Identities=17% Similarity=0.066 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 757 VDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 757 ~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
...+++++..++..+++-+.....-.+-...|..+..-|..|...++.-..++..+...|.+++..|+-+.+-|+
T Consensus 64 k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566666777777777766655555555566666666666666666666666666666666666666666665
No 107
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.06 E-value=0.0011 Score=60.48 Aligned_cols=41 Identities=24% Similarity=0.674 Sum_probs=29.6
Q ss_pred cccccccccccccce--E-EeCCCCcccchhhhhcC------------CCCCC--Cccc
Q 001324 1050 NSHMCKVCFESPTAA--I-LLPCRHFCLCKSCSLAC------------SECPI--CRTK 1091 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~--v-l~pC~H~~~C~~C~~~~------------~~CP~--Cr~~ 1091 (1100)
+...|.||++..... + +.||||. ||..|.... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 355799999865442 2 2389999 999994221 35999 9988
No 108
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.0028 Score=56.02 Aligned_cols=45 Identities=20% Similarity=0.718 Sum_probs=33.8
Q ss_pred cccccccccccc--cceEEeCCC-----CcccchhhhhcC------CCCCCCcccccce
Q 001324 1050 NSHMCKVCFESP--TAAILLPCR-----HFCLCKSCSLAC------SECPICRTKISDR 1095 (1100)
Q Consensus 1050 ~~~~C~iC~~~~--~~~vl~pC~-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 1095 (1100)
....|.||++.. .+.+++||. |. |...|.... ..||+||..+.-.
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 445899999743 356779997 98 999995432 4799999987643
No 109
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.0025 Score=68.30 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=35.4
Q ss_pred cccccccccccccceEEe-CCCCcccchhhhhcC------CCCCC--Cccccc
Q 001324 1050 NSHMCKVCFESPTAAILL-PCRHFCLCKSCSLAC------SECPI--CRTKIS 1093 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~~------~~CP~--Cr~~i~ 1093 (1100)
....|+||++-..+.|.. .|||. ||..|...+ ..||+ |+..+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 445899999999999985 99998 999995432 35999 999764
No 110
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.58 E-value=1.6 Score=43.04 Aligned_cols=43 Identities=30% Similarity=0.307 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 793 QKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 793 ~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
.+++.+....+..+..+..+++..-..+..++..+-.|..|+.
T Consensus 108 d~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 108 DDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3344444444444555555555555555555555555544433
No 111
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.44 E-value=0.0053 Score=55.67 Aligned_cols=42 Identities=26% Similarity=0.772 Sum_probs=29.9
Q ss_pred ccccccccccce--EEeCCCCcccchhhhhc-----CCCCCCCccccccee
Q 001324 1053 MCKVCFESPTAA--ILLPCRHFCLCKSCSLA-----CSECPICRTKISDRL 1096 (1100)
Q Consensus 1053 ~C~iC~~~~~~~--vl~pC~H~~~C~~C~~~-----~~~CP~Cr~~i~~~i 1096 (1100)
.|.+|-- +..+ -+.||.|. ||..|+.. ...||+|+.+|...=
T Consensus 3 fC~~C~~-Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGL-PIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCS-BCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCC-CeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4777733 2322 35699996 99999843 467999999987653
No 112
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.27 E-value=0.45 Score=61.64 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHhhcC--CCceEEEEEeeeeeecceeee
Q 001324 199 GIIPLAIKDVFSIIQDT--PGREFLLRVSYLEIYNEVIND 236 (1100)
Q Consensus 199 Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIyne~i~D 236 (1100)
+|.-+.+.+|...|... +.......|..+.||.=.+++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 67777777777777531 122234567788888655544
No 113
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.93 Score=42.08 Aligned_cols=80 Identities=23% Similarity=0.202 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
+...|+...+.|..++...-.. +...+......++.+++++..+....+.+...+.+|+..|.-|+......-.++.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K---~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEK---LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 3334444444444444332221 3334444556677788888888888899999999999999888766544444444
Q ss_pred HHh
Q 001324 843 SRG 845 (1100)
Q Consensus 843 ~~e 845 (1100)
.++
T Consensus 81 D~E 83 (111)
T 2v66_B 81 DFE 83 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 114
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.01 E-value=3 Score=41.10 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 784 ENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 784 ~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
+.+.-..+..+++.++..+++-++.+....+.+...|.+|+.+..+|+.+|...+.......
T Consensus 64 seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~ 125 (155)
T 2efr_A 64 QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 125 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556677888888888888888888899999999999999999988887776666554
No 115
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=94.85 E-value=3.8 Score=44.51 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=8.0
Q ss_pred hhhhhhhhHHhhhhccc
Q 001324 854 VNRKYSDGMKAGRKGRL 870 (1100)
Q Consensus 854 ~~r~~l~~~~~~~~e~l 870 (1100)
+.++.+..+..+++..+
T Consensus 231 ~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 231 NFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444444
No 116
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.23 E-value=0.59 Score=56.64 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHH
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQT 682 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~ 682 (1100)
+..+.+.+.+..+.+.....+++.....+....+++....+.+++.+...+...+ .+...
T Consensus 465 i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------------~~~~~ 524 (597)
T 3oja_B 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQA--------------------FKLRE 524 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHH--------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhh--------------------hhHHH
Confidence 3334444444555555555555555555554444444444444444444444444 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 683 VTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 683 ~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
.+++..+.+++.++++.++.++..++.+++.. .....+++++...+.++++.+...
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~----~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 525 TQARRTEADAKQKETEDLEQENIALEKQLDNK----RAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666 334455555555555555555443
No 117
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.08 E-value=5.2 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEH 778 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~ 778 (1100)
.+++.++..+..|++.++...
T Consensus 93 ~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 118
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.02 E-value=0.017 Score=48.13 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=35.3
Q ss_pred cccccccccccceEEe-CCCCcccchhhhhcC----CCCCCCccccc
Q 001324 1052 HMCKVCFESPTAAILL-PCRHFCLCKSCSLAC----SECPICRTKIS 1093 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~~----~~CP~Cr~~i~ 1093 (1100)
..|.||++-..+.|+. +|||. ||..|.... ..||+++.++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCC
Confidence 4799999999999999 99998 999996543 56999999864
No 119
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.00 E-value=0.52 Score=57.09 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 804 ELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 804 ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
++.+++..|.+.++.++.+...+...|.+|+...+....+++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.73 E-value=4.4 Score=38.82 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhh
Q 001324 693 KAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQ 739 (1100)
Q Consensus 693 k~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l 739 (1100)
.+.|+..+..++..|...|... .....+|......|.++..++
T Consensus 11 ~e~E~~~~~eel~~lke~l~k~----e~~r~ele~~~~~l~~Ek~~L 53 (129)
T 2fxo_A 11 REKEMASMKEEFTRLKEALEKS----EARRKELEEKMVSLLQEKNDL 53 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666555 334555555555555554443
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.08 E-value=0.023 Score=57.64 Aligned_cols=52 Identities=15% Similarity=0.060 Sum_probs=36.1
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++||.....+..|..++. .+..++.++--.....|+-||++|+|||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 34788887665556777776 45555655433334567889999999999874
No 122
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.82 E-value=1.6 Score=42.03 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV 757 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~ 757 (1100)
..+..+.+|.+.+....-|++.+.+.+..|+.+|..+..++..+...++..+..
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~-------------------------- 88 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGS-------------------------- 88 (131)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 455566777777788888888888888888888888755455444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAK 803 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ 803 (1100)
+..++.+++.+.......+..|...|-.|+.|+....
T Consensus 89 ---------lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 89 ---------VEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555667777777777765443
No 123
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.78 E-value=8.1 Score=35.83 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001324 721 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 800 (1100)
Q Consensus 721 ~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~ 800 (1100)
.+++|+..+..|..+++.++.+ ......+....+..++.++..++... +.|...-+.|+..-.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K----------~~~~~~e~~~~~~~Lq~El~~lr~~~-------~~l~~~iReLEq~ND 66 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEK----------LEHQYAQSYKQVSVLEDDLSQTRAIK-------EQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhch
Confidence 4566666666677666665542 11222333444555566665555544 334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 801 YAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 801 ~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
-+.--.+...+=++++..+++.+...|+-|+.||..+.
T Consensus 67 DLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 67 DLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566778889999999999999999999988443
No 124
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.61 E-value=2.4 Score=40.60 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYV 757 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~ 757 (1100)
.....+.+|.+.+....-|++.+.+.+..|+.+|.++..++..+...++..+..|
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~l------------------------- 87 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAEL------------------------- 87 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 4556677788888888888888888888888888888555554555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYA 802 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~ 802 (1100)
.+++.+++.+.......+..|...|-.|+.|+...
T Consensus 88 ----------E~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 88 ----------EEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455556667777777776543
No 125
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.60 E-value=1.3 Score=41.07 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
+-+.+..+|...+....++|++..++-.+|+..+..+......+...|..+++.-++.|.+|+
T Consensus 3 ~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 3 ETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777788999999999999999988866556667777777766666665555
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.56 E-value=0.063 Score=55.29 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=33.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCc-eeEEeeccCCCCCccccC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN-GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n-~ti~aYGqtgSGKT~Tm~ 192 (1100)
.++||.+...+..+..++. .+..++...-.++. ..|+-||++|+||||.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 4678876655545666776 34445554433322 678999999999999863
No 127
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.34 E-value=5.1 Score=38.34 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
++..+..++..++............|...+.++..+...+......-...+.++.+++..|......|+..|....+...
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333334445556666666666666666666666666777777777777777766666655555
Q ss_pred HHh
Q 001324 843 SRG 845 (1100)
Q Consensus 843 ~~e 845 (1100)
..+
T Consensus 94 eee 96 (129)
T 2fxo_A 94 DEE 96 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 128
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.90 E-value=3.3 Score=39.16 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHH
Q 001324 612 MLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCN 691 (1100)
Q Consensus 612 ~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ 691 (1100)
+|..++..++..++.++.+ ..++..++..++++++..+.+... ++ .+
T Consensus 17 ~ye~~I~~LR~qid~~~~e----~a~l~leldn~~~~~edfk~KyE~---E~--------------~~------------ 63 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTND----KARVEVERDNLAEDIMRLREKLQE---EM--------------LQ------------ 63 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HH--------------HH------------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH---HH--------------HH------------
Confidence 4555566666655544432 234555666777778777777661 00 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhcc
Q 001324 692 EKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNG 741 (1100)
Q Consensus 692 ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~ 741 (1100)
...+++++..|...++.+ .....+|..++..|+++|.+++.
T Consensus 64 -----r~~~E~di~~lrK~lD~~----~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 64 -----REEAENTLQSFRQDVDNA----SLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp -----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhhcccHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345666677777777 55778888888888888888775
No 129
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.89 E-value=0.079 Score=58.97 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.2
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 3678775543334555665 45556665444445678899999999999874
No 130
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=90.64 E-value=1.2 Score=41.45 Aligned_cols=100 Identities=22% Similarity=0.198 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHH
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM 679 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el 679 (1100)
.++.+.|...+..+.+++.....+.++|.+......++-+.+|.+|.+.+..-+..+.+|-+...+.. .+.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q---------~~v 75 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAK---------RDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 46777777777788888888888888888888887888888888888888877777775555333222 255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQ 708 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~Lq 708 (1100)
+.++++|...-.....||.++.+||+-|.
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 55666666666666666666666666554
No 131
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.58 E-value=0.083 Score=43.81 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=32.0
Q ss_pred cccccccccccccceEEeCCCCc----ccchhhhhc------CCCCCCCccccc
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHF----CLCKSCSLA------CSECPICRTKIS 1093 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~----~~C~~C~~~------~~~CP~Cr~~i~ 1093 (1100)
+...|.||++...+.++.||.+. .|-..|... ...||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45589999987766678997652 367788422 356999999874
No 132
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.66 E-value=11 Score=34.50 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 826 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~q 826 (1100)
+..+++++.++.+.|.+......+......+.....+.+.++..++--+..+..+++.+.+.+..+...
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776666555555555555555566666665555555555555555555544433
No 133
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.66 E-value=11 Score=34.47 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKL 823 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL 823 (1100)
+..+++++.++.+.|.+......+......+.....+.+.++..+.--+..+..+++.+.+.+..+
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666665555444444444444555555555544444444444444444433
No 134
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.09 E-value=4.2 Score=36.64 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 001324 921 DEYRKKVEESKRREEALENDLANMWVLVAKLKKE 954 (1100)
Q Consensus 921 ~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke 954 (1100)
.+|.+.++++...-..++.++.+|+..+..++..
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667888888888888888898888888888764
No 135
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=88.34 E-value=2.8 Score=35.76 Aligned_cols=69 Identities=28% Similarity=0.268 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 767 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 767 lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
+-.++|.+-.+..+|-+-+..|...+.-|-..+..+..+...+..|++.+.+-..++...+..|++||.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777777777777777776666666666666666666666666666666666666666654
No 136
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.21 E-value=4.3 Score=35.38 Aligned_cols=19 Identities=37% Similarity=0.340 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 001324 766 SQETENEKLKLEHVQLSEE 784 (1100)
Q Consensus 766 ~lk~elE~lk~e~~~l~e~ 784 (1100)
.++-|+++||.++..+.++
T Consensus 24 lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333
No 137
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.18 E-value=6.3 Score=34.97 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 699 IKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 699 ~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
..++++..|..-++.+ .-...+|..++..|+++|.+|+..
T Consensus 46 ~~E~d~~~LrkdvD~a----~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 46 EAENTLQSFRQDVDNA----SLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHTTHHHH----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666777778888 557889999999999999998853
No 138
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.92 E-value=2.4 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRL 627 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L 627 (1100)
+|.+|-+.+...|..++.+++++
T Consensus 54 lLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHH
Confidence 45566666666677776666655
No 139
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.77 E-value=22 Score=34.89 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGL 788 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L 788 (1100)
+...+..|+|.|-.-+ +.++|...
T Consensus 80 ~~~~ie~ElEeLTasL--FeEAN~MV 103 (154)
T 2ocy_A 80 EADKLNKEVEDLTASL--FDEANNMV 103 (154)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3344455555555555 55555544
No 140
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.13 E-value=1.5 Score=37.37 Aligned_cols=47 Identities=23% Similarity=0.162 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001324 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLL 732 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~L 732 (1100)
.+.+|...+..|.+||..++.-+++|+.+|+.+ -.++.+|+.++.++
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek----d~eI~~LqseLDKf 66 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQK----DELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 478899999999999999999999999999988 44566666555433
No 141
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.01 E-value=2.7 Score=40.81 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhh
Q 001324 673 NASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQ 739 (1100)
Q Consensus 673 ~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l 739 (1100)
-+++..++.....|..++.++..|+..+..++..++.+++.+ ..+..+|++++..|+.++..|
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~----~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESS----AKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888888888888888888 666777777776666666554
No 142
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.45 E-value=0.24 Score=54.56 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=31.0
Q ss_pred cceecCCCCChhHHHhhhhHHHHHHHhcCCc----eeEEeeccCCCCCcccc
Q 001324 144 FDRVFGPHANSQEVYDVAARPVVKAAMEGVN----GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 144 FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n----~ti~aYGqtgSGKT~Tm 191 (1100)
||.+|+..---..+.+.++..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4555544433455666667677766554222 36788999999999865
No 143
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=86.40 E-value=0.14 Score=56.83 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 925 KKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 925 ~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
..+.+.-.+....-..|...|+.++.+.+...-
T Consensus 177 ssL~~v~~qF~~~LE~Lq~FWd~LdeID~~~wV 209 (381)
T 3k1l_B 177 GNLEEALNLFRKLLEDLRPFYDNFMDIDELCHV 209 (381)
T ss_dssp CSHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 556666666666666777889988999887654
No 144
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.52 E-value=0.87 Score=52.93 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=51.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhc--C--CceeEEeeccCCCCCccccC--------------CC---CCCC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSP 198 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~--G--~n~ti~aYGqtgSGKT~Tm~--------------G~---~~~~ 198 (1100)
.-+||.|-+-+.--+.+.+.+..|+.. ..+. | +--.|+-||++|+|||++.- |+ ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 357888888776667777777777652 3343 2 23468999999999998742 11 2345
Q ss_pred CchhHHHHHHHHHhhcC
Q 001324 199 GIIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 199 Giipr~~~~lF~~i~~~ 215 (1100)
|--.+.++.+|......
T Consensus 257 Gese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEK 273 (434)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhc
Confidence 77788888888876543
No 145
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.48 E-value=8.8 Score=36.68 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=31.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001324 750 QGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAK 803 (1100)
Q Consensus 750 ~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ 803 (1100)
....+.++.++.+.++.++.+|+.++.....|... |.....+++.+...+.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~---l~e~e~~~~~~l~~~q 81 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNA---IADAEQRGELALKDAR 81 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34567888888888888888888887776555433 4444444444433333
No 146
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.41 E-value=61 Score=37.68 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 761 RKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 761 ~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+...+.++.+.+..+++.... ...-+++.++...++.++.++..++..+.+++..+..+.+.|++.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 420 EEMYVEQQSVQNNAIRDWDMY-------QHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhh-------hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHHh
Confidence 333333444555555554333 334444555555556666666666666666666666666666554
No 147
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.15 E-value=4.5 Score=44.17 Aligned_cols=120 Identities=9% Similarity=0.145 Sum_probs=80.6
Q ss_pred CCCEEEEEEeCCCChhhhhcCCeEEEeeCCCEEEecCCCCCcceecceecCCCC-ChhHHHhhhhHHHHHHHh-cCCcee
Q 001324 99 GDSISVTIRFRPLSEREFQRGDEIAWYADGDKIVRNEYNPATAYAFDRVFGPHA-NSQEVYDVAARPVVKAAM-EGVNGT 176 (1100)
Q Consensus 99 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~q~~vy~~~~~~lv~~~l-~G~n~t 176 (1100)
+|.||+|+=+-+-. .+..+.+.....+|. .......|.|++|+.... +-.+++..-.+..++-++ .+.|+.
T Consensus 58 KG~IRcFAYi~~~~-----~p~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~Nfs 130 (333)
T 4etp_B 58 KGTMRVYAYVMEQN-----LPENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFN 130 (333)
T ss_dssp HTCCEEEEEECCSS-----CCSSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEE
T ss_pred cCcEEEEEEECccc-----CCccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCee
Confidence 57888888776632 122344444444443 233567899999996554 355666668899999999 999999
Q ss_pred EEeeccCCCCCccccCCCCCCCCchhHHHHHHHHHhhcC---CCceEEEEEeeeeeecce-eeecCCCC
Q 001324 177 VFAYGVTSSGKTHTMHGDQNSPGIIPLAIKDVFSIIQDT---PGREFLLRVSYLEIYNEV-INDLLDPT 241 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~G~~~~~Giipr~~~~lF~~i~~~---~~~~~~v~vS~~EIyne~-i~DLL~~~ 241 (1100)
||..|..-- +..-..|+..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 131 lIsis~~~w----------------~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 131 LISLSTTPH----------------GSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp EEEEESSCC----------------CHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred EEEecCCCc----------------HHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 999886421 23445555556544 135789999998887776 79999875
No 148
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=84.45 E-value=27 Score=32.74 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001324 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN 713 (1100)
Q Consensus 675 ~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~ 713 (1100)
.+++|.+-+..+.+.+.|-.+||++.-.-+++=+...+.
T Consensus 12 ~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQ 50 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQ 50 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456888888888999999999998655555554444433
No 149
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.97 E-value=0.75 Score=39.73 Aligned_cols=46 Identities=15% Similarity=0.429 Sum_probs=32.4
Q ss_pred cccccccccccccceEEe-CCCCcccchhhhhc------CCCCCCCccccccee
Q 001324 1050 NSHMCKVCFESPTAAILL-PCRHFCLCKSCSLA------CSECPICRTKISDRL 1096 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~-pC~H~~~C~~C~~~------~~~CP~Cr~~i~~~i 1096 (1100)
....|.||++-...-+.. .|+|. |-..|..+ ...||+||..+...+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 345899998765543332 78888 88999642 267999999876543
No 150
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.97 E-value=8.3 Score=35.39 Aligned_cols=25 Identities=24% Similarity=0.084 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 001324 685 RLMSQCNEKAFELEIKSADNRILQE 709 (1100)
Q Consensus 685 ~L~r~l~ek~~Ele~~~ad~~~Lqe 709 (1100)
.|..+|...++-|..++.++++|.+
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ 52 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKE 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444333
No 151
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.94 E-value=1.2 Score=51.70 Aligned_cols=113 Identities=23% Similarity=0.393 Sum_probs=65.0
Q ss_pred EEEEEeCCCChhh-hhcCCeEEEeeCCCEEEe---cCCC---------CCcceecceecCCCCChhHHHhhhhHHHHH-H
Q 001324 103 SVTIRFRPLSERE-FQRGDEIAWYADGDKIVR---NEYN---------PATAYAFDRVFGPHANSQEVYDVAARPVVK-A 168 (1100)
Q Consensus 103 ~V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~---~~~~---------~~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~ 168 (1100)
+.+|++......+ ...|..+.+..+...++. .... ....-+||.|-|-+.--+.+.+.+..|+.. .
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 5566766665544 344555544444333221 1111 111346777777655555566655555542 2
Q ss_pred Hhc--CC--ceeEEeeccCCCCCccccC--------------CC---CCCCCchhHHHHHHHHHhhcC
Q 001324 169 AME--GV--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPGIIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 169 ~l~--G~--n~ti~aYGqtgSGKT~Tm~--------------G~---~~~~Giipr~~~~lF~~i~~~ 215 (1100)
.+. |. .-.|+-||++|+|||+..- |+ ....|--++.++++|......
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc
Confidence 333 32 2359999999999998742 11 234688889999999887654
No 152
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.99 E-value=8 Score=37.09 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 001324 751 GTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASY 801 (1100)
Q Consensus 751 ~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~ 801 (1100)
...+.++.++++.++.++.+|+.++.....|.. .|.....+++.+...
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~---~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLEN---SLEETKGRYCMQLAQ 81 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHH
Confidence 345667777888888888888887776654433 244444444444333
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.51 E-value=0.53 Score=49.04 Aligned_cols=45 Identities=24% Similarity=0.455 Sum_probs=27.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHh-cCCceeEEeeccCCCCCccccC
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM-EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l-~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+.||.+++. ..+..++. .+..+. .+....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~-----~l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIG-----ALKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHH-----HHHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 567766552 23344444 233333 3356778999999999999763
No 154
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.50 E-value=13 Score=43.07 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
..+....|++.+.|+++.+..-...+..|..-|+++..+.++|+-.+..+.+.
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444566777777777766655777777777777777777777776655443
No 155
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.48 E-value=0.54 Score=50.48 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=31.9
Q ss_pred ceecceecCCCCChhHHHhhhhHHHH-HHHh----cCCceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAM----EGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv-~~~l----~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+.||.+.+.+.....+... +..+- ...+ ......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 47889999877666666542 22111 0111 122345899999999999976
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.45 E-value=0.41 Score=51.48 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=22.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 3789998764433333332 223322 23467888999999999875
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.21 E-value=0.51 Score=51.14 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-----HHhcCCceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-----AAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-----~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.|.||.+.+.+..-+.+...+..++.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 478999887665555555544433221 111133456899999999999875
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.79 E-value=0.69 Score=45.97 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 334455555666788999999999999873
No 159
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.79 E-value=0.29 Score=56.12 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=31.9
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCCcccc
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G---~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+.||.+.+.+.--+.+...+..|+.. .++.| ....|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3467898887554444444444443331 11122 2357999999999999875
No 160
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.65 E-value=2.2 Score=49.58 Aligned_cols=74 Identities=22% Similarity=0.347 Sum_probs=49.6
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCCccccC--------------CC---CCCCC
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~----n~ti~aYGqtgSGKT~Tm~--------------G~---~~~~G 199 (1100)
.+||.|-|-+..-+++.+.+.-|+.. ..+.++ .-.|+-||++|+|||++.- |+ ....|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 56788777655555666666666542 334332 3468999999999998642 11 23457
Q ss_pred chhHHHHHHHHHhhcC
Q 001324 200 IIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 200 iipr~~~~lF~~i~~~ 215 (1100)
--...+..+|......
T Consensus 258 ese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 258 ESARIIREMFAYAKEH 273 (437)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7788999999887654
No 161
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.59 E-value=0.54 Score=51.79 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhc----CCceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME----GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~----G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+.||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 367888887655555565554444321 1111 23456899999999999875
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.46 E-value=0.73 Score=51.12 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=29.7
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|+||..+. ...+...+.. +..++..-- +....|+-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 588988653 2334444442 333333211 123468899999999999874
No 163
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.40 E-value=25 Score=31.23 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 813 LKNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 813 ~~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
+.++.++...|......|+..|....+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887765543
No 164
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=80.17 E-value=0.49 Score=52.77 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=21.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+-..+..|...+|+-||++|+|||.++
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333444678889999999999999886
No 165
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.59 E-value=28 Score=33.94 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 762 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 762 ~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
..+..++.++..++..+..+.+. +.++. .-...+.++...+..++.-+.+++.+|+.+|..|=+.+.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeee---l~eK~----K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEV---IALKN----KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444333332 22222 223446788888888888889999999998888865543
No 166
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.54 E-value=35 Score=30.76 Aligned_cols=37 Identities=24% Similarity=0.145 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001324 677 VDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQN 713 (1100)
Q Consensus 677 ~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~ 713 (1100)
..++.....+.+++-+...|+..+.+..+-.+.||+.
T Consensus 56 ~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 56 AQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777788888888888888887777766666666654
No 167
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.54 E-value=2.9 Score=48.04 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=51.3
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcC--C--ceeEEeeccCCCCCccccC--------------CC---CCCCC
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEG--V--NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G--~--n~ti~aYGqtgSGKT~Tm~--------------G~---~~~~G 199 (1100)
-+||.|-|-+.--+++.+.+.-|+.. ..|.+ . .-.|+-||++|+|||+..- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 56788877666666677777776653 33432 2 3469999999999998742 21 23457
Q ss_pred chhHHHHHHHHHhhcC
Q 001324 200 IIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 200 iipr~~~~lF~~i~~~ 215 (1100)
--.+.++.+|......
T Consensus 225 ese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 225 EGSRMVRELFVMAREH 240 (405)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh
Confidence 7889999999988654
No 168
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.24 E-value=0.66 Score=51.74 Aligned_cols=44 Identities=18% Similarity=0.430 Sum_probs=29.2
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..|.||.+++.+ .+... +...++.+..+.|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 348899987642 33322 233344444556999999999999875
No 169
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=79.23 E-value=34 Score=34.11 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=77.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHhhhh---------
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV---QIQNLEREIQEKRRQMRILEQRIIENG--------- 667 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~---qieeLed~l~~~k~~i~~Le~ri~~sr--------- 667 (1100)
.+.+|.+-.+++.+..+......+.+.|.+++.....+++. .++--.+.++-.+.++.+-++-..++.
T Consensus 9 ~~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~ 88 (170)
T 3l4q_C 9 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNE 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCH
Confidence 45788999999999999999999999999999877666654 244445555555555543332111111
Q ss_pred -cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 668 -EASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 668 -~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+...+......|+..+..|...-...+++|+...+++++|+.+++..
T Consensus 89 ~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsL 136 (170)
T 3l4q_C 89 KEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSL 136 (170)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11223344456666666666666677777878888888888777776
No 170
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.87 E-value=37 Score=30.62 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 767 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 767 lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
++.++..++.+-..+...-..|...+..+..++..+..+..++..+-...-.+++.+..+...+..|+.+......+-.
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333344555555555666666666666555555556666666666666666666655555444
No 171
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.82 E-value=0.41 Score=51.13 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=28.6
Q ss_pred ceecceecCCCCChhHHHhhhhHHHH-HHHhcCC----ceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv-~~~l~G~----n~ti~aYGqtgSGKT~Tm 191 (1100)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 4789988875443333322 211110 1122222 223899999999999986
No 172
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.47 E-value=16 Score=33.51 Aligned_cols=76 Identities=18% Similarity=0.091 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 752 TSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 752 e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
.+...+..+++-+...+.++++++.++....+..+.+.. |...+...++.+..-..--+++.++...|..+++.|.
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~v----LkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPV----LKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 344566667777777788888888877555443333322 2233333344444444444444444444444444443
No 173
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.09 E-value=14 Score=35.80 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 795 LAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 795 le~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
+..|.+.++.++..+..+++.+..++.+|..++..|+.++..+
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555554444433
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.04 E-value=1.1 Score=43.98 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCccccC
Q 001324 175 GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++-||++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 457779999999999874
No 175
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.99 E-value=55 Score=32.10 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 796 AEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 796 e~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
..+......+..+|..++..-...-..++.+..+++.||+.+-
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555555443
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=77.83 E-value=0.77 Score=45.60 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++..+..+....|+-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 334455555667788999999999999763
No 177
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=77.76 E-value=17 Score=32.94 Aligned_cols=66 Identities=15% Similarity=0.238 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRIIE 665 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~q-ieeLed~l~~~k~~i~~Le~ri~~ 665 (1100)
...+++|.+.++..+..+.-.++-+++.++++..++++++.+ +..=+.++..++.++..|.+.+++
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888889999999999999999999999998874 444445555555555544444443
No 178
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.57 E-value=45 Score=30.84 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 001324 722 NKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 722 ~~el~~~~~~Lq~el~~l~ 740 (1100)
..+.++.-..|+.+|...+
T Consensus 20 q~ECrN~T~lLq~qLTqAQ 38 (121)
T 3mq7_A 20 VMEARNVTHLLQQELTEAQ 38 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 4556666667777766544
No 179
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=77.49 E-value=4.7 Score=48.58 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSA 702 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~a 702 (1100)
++...+.+|+++|...++|.+....
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQA 356 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666655554333
No 180
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=76.91 E-value=44 Score=30.40 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 766 SQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 766 ~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
.++.++..+......+.+....|.-+.+-++.+.-.+.+.+..+...++........++.+++.|...
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333344444445555555555555555555555555555555555555555555443
No 181
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=76.61 E-value=14 Score=30.67 Aligned_cols=61 Identities=21% Similarity=0.143 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 001324 682 TVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAG 746 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~ 746 (1100)
|-.+|..++++|.+|++++ +.|=..|..++++|..-+++|+.+..-++.-+.+|.....+.
T Consensus 4 QNKeL~~kl~~Kq~EI~rL----nvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~ 64 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFEL----KKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSDA 64 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcccc
Confidence 5568899999999999985 455566666777778889999998888887777776544443
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.46 E-value=5 Score=46.36 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=64.7
Q ss_pred EEEEeCCCChhh-hhcCCeEEEeeCCCEEEe---cCCCC---------CcceecceecCCCCChhHHHhhhhHHHHH-HH
Q 001324 104 VTIRFRPLSERE-FQRGDEIAWYADGDKIVR---NEYNP---------ATAYAFDRVFGPHANSQEVYDVAARPVVK-AA 169 (1100)
Q Consensus 104 V~vRvRP~~~~E-~~~~~~~~~~~~~~~~~~---~~~~~---------~~~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~ 169 (1100)
.+|++......+ +..|..+.+..+...++. ....+ ...-+||.|-|-+.--+++.+.+.-|+.. ..
T Consensus 128 ~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~ 207 (437)
T 4b4t_I 128 YYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPEL 207 (437)
T ss_dssp CEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH
T ss_pred EEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH
Confidence 355666655444 455665555444333221 11111 11246677766555555566655555532 23
Q ss_pred hc--C--CceeEEeeccCCCCCccccC--------------CC---CCCCCchhHHHHHHHHHhhcC
Q 001324 170 ME--G--VNGTVFAYGVTSSGKTHTMH--------------GD---QNSPGIIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 170 l~--G--~n~ti~aYGqtgSGKT~Tm~--------------G~---~~~~Giipr~~~~lF~~i~~~ 215 (1100)
+. | +--.|+-||+.|+|||+..- |+ ....|--.+.++.+|......
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 33 2 23579999999999997641 21 244688899999999988654
No 183
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.20 E-value=0.8 Score=49.96 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=32.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G---~n~ti~aYGqtgSGKT~Tm 191 (1100)
...||.+.+.+..-..+...+..|+.. ..+.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888887554444555544444331 12222 3467999999999999875
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.07 E-value=1.1 Score=48.12 Aligned_cols=21 Identities=29% Similarity=0.170 Sum_probs=18.3
Q ss_pred cCCceeEEeeccCCCCCcccc
Q 001324 171 EGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999975
No 185
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=75.49 E-value=32 Score=30.38 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHH
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQ 681 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~ 681 (1100)
++..|+.|+..+..+++.+..+++.+... ++.++...+..-..-..+|..+. ....++-++-.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~-----------~edfk~KyE~E~~~R~~~E~d~~------~LrkdvD~a~l 63 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAED-----------IMRLREKLQEEMLQREEAENTLQ------SFRQDVDNASL 63 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH------HHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHH
Confidence 45678888888888888888777743322 22222222222222233333222 22233446666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001324 682 TVTRLMSQCNEKAFELE 698 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele 698 (1100)
.+..|+.++....+||.
T Consensus 64 ~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 64 ARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777766666664
No 186
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.18 E-value=38 Score=37.80 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHH
Q 001324 607 VEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRL 686 (1100)
Q Consensus 607 ~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L 686 (1100)
.++-+.+...|..|+..|+++.. .-......+..+.+-+.....+....+..+. ++ ..+|+.++..|
T Consensus 59 dk~er~~~~rIe~L~~~L~~~s~----s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~---e~------s~eLe~~i~~l 125 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLFNYQK----NSKDSNTLTKNIVELMRGDFAKANNNDNTFK---QI------NEDLRSRIEIL 125 (390)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHhhccchHHHH---HH------HHHHHHHHHHH
Confidence 34445555566666665554432 2233344455555555555555553333222 11 22555666666
Q ss_pred HHHHHHHHHHHHH
Q 001324 687 MSQCNEKAFELEI 699 (1100)
Q Consensus 687 ~r~l~ek~~Ele~ 699 (1100)
++.+++.--.|.+
T Consensus 126 k~~V~~q~~~ir~ 138 (390)
T 1deq_A 126 RRKVIEQVQRINL 138 (390)
T ss_pred HHHHHHHhHHHHH
Confidence 6655554443333
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.12 E-value=0.8 Score=51.80 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=32.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHH----hcCCceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAA----MEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~----l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
...||.+++.+..-..+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35788888755444445544444432211 2345567999999999999876
No 188
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=74.82 E-value=0.96 Score=40.32 Aligned_cols=47 Identities=26% Similarity=0.737 Sum_probs=36.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhhhcC----CCCCCCcccccceeec
Q 001324 1050 NSHMCKVCFESPTAAILLPCRHFCLCKSCSLAC----SECPICRTKISDRLFA 1098 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~----~~CP~Cr~~i~~~i~~ 1098 (1100)
.+..|..|.-..++.|- |.-..+|-.|-..+ ..||||..++...|.+
T Consensus 27 G~~nCKsCWf~~k~LV~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSSEEE--CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCCeee--ecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 34579999999887774 54444999997665 4599999998877754
No 189
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.76 E-value=4 Score=49.15 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001324 641 QIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~ 657 (1100)
.++.++..-.+.+...+
T Consensus 301 e~qqm~~~a~e~~~~~~ 317 (575)
T 2i1j_A 301 DVQQMKAQAREEKLAKQ 317 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555544444444
No 190
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=74.57 E-value=37 Score=33.09 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=48.2
Q ss_pred HhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 627 LVDQSVNDPDGSKV---QIQNLEREIQEKRRQMRILEQRIIENGEA-SMANASMVDMQQTVTRLMSQCNEKAFELEIKSA 702 (1100)
Q Consensus 627 L~~q~~~~~~~l~~---qieeLed~l~~~k~~i~~Le~ri~~sr~~-~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~a 702 (1100)
|.+++...-+++.. .++++..+.+.-...+..|+.+...+-+. ......+.++......-.++..+-.-.|.+++.
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~ 87 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 87 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444443 45555666666666666666655533332 122222222222223333333333333334444
Q ss_pred hHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 703 DNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 703 d~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
++...+++++.+ -..+.+|.+.++.+-..|+.|.
T Consensus 88 dLeraeeRae~a----E~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 88 DLERAEERAELS----EGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhH
Confidence 555555555555 3345555555544444444433
No 191
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=74.24 E-value=16 Score=31.53 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRIIE 665 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~q-ieeLed~l~~~k~~i~~Le~ri~~ 665 (1100)
..+.+|.+.++..+..+.-.++-+++.+.++..+|++++.+ +..=+.++..++.++..|.+.+++
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999999999999998874 444444555555555544444443
No 192
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.14 E-value=37 Score=29.54 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001324 760 LRKKVQSQETENEKLKLEHVQLS 782 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~ 782 (1100)
++++++.++.+.+.+......+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e 26 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAE 26 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777766666553333
No 193
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=73.64 E-value=1.6 Score=43.15 Aligned_cols=66 Identities=27% Similarity=0.520 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCcccccccccccccc-----ceEEeCCCCcccchhhhhcCC-----CCCCCcc
Q 001324 1024 PLVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPT-----AAILLPCRHFCLCKSCSLACS-----ECPICRT 1090 (1100)
Q Consensus 1024 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~iC~~~~~-----~~vl~pC~H~~~C~~C~~~~~-----~CP~Cr~ 1090 (1100)
..+.+|+.+++.+..+..........+...|.+|..... ..+-.-|.|. +|..|....+ .|-+|+.
T Consensus 41 eRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 41 ERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHH
Confidence 355566666666543332222222235679999987632 3333455555 6777753221 2666654
No 194
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=73.51 E-value=0.61 Score=50.59 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=28.3
Q ss_pred ceecceecCCCCChhHHHhhhhHHHH-HHHhcCC----ceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEGV----NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv-~~~l~G~----n~ti~aYGqtgSGKT~Tm 191 (1100)
.++||.|.+.+.....+.+ +...+- ..++.++ ...|+-||++|+|||+.+
T Consensus 36 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4788888775543333322 211110 1122222 223899999999999986
No 195
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.89 E-value=14 Score=32.94 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
..+..+++-+.+.+.+|++++.++.......+.+ .-|...+...++.+..-...-+++.++...|..+++.|..+
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i----~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETV----PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455566666667777777777764444322222 22333344444555544444455555555555555444443
No 196
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.81 E-value=1.6 Score=50.98 Aligned_cols=49 Identities=31% Similarity=0.474 Sum_probs=28.5
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+||.... +..+...+. .+..++.. .|....+|-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~-g~~n~~a~~-~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVV-GPGNSFAYH-AALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCC-CTTTHHHHH-HHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCC-CCchHHHHH-HHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 3588987542 223333433 22333322 2313468899999999999874
No 197
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.77 E-value=54 Score=29.53 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 001324 822 KLSLQNAKLEKELL 835 (1100)
Q Consensus 822 kL~~qn~~L~~EL~ 835 (1100)
.++..|.+|.++|.
T Consensus 80 ~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 80 AIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555554443
No 198
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=72.54 E-value=0.9 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=17.9
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+....|+-||++|+|||+.+.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHH
Confidence 3455689999999999998863
No 199
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.85 E-value=66 Score=30.11 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001324 679 MQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQ 712 (1100)
Q Consensus 679 l~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~ 712 (1100)
+...+..|.+++....-+-.++..+++-++..++
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~e 51 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 51 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444444444444433333333
No 200
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.71 E-value=7.8 Score=36.58 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=34.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 001324 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 599 ~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~ 657 (1100)
..|+-|.+. ..|..++..++.+++.+.-+.......++.+|-.|+.++.+.+...+
T Consensus 9 ~~d~rD~~I---e~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q 64 (120)
T 3i00_A 9 NKDEKDHLI---ERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQ 64 (120)
T ss_dssp -CCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 45777888888888877666655555556666666666666554443
No 201
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=71.51 E-value=59 Score=29.44 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 767 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 767 lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
++.++..+......+.+....|.-+.+-++.+.-.+.+.+..+...++........++.+++.|..
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444555555555555555555555555555555555555543
No 202
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=71.28 E-value=19 Score=32.24 Aligned_cols=66 Identities=11% Similarity=0.206 Sum_probs=48.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRIIE 665 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~q-ieeLed~l~~~k~~i~~Le~ri~~ 665 (1100)
...+.+|.+.++..+..+.-.++-+++.+.++..++.+++.+ +..=+.++..++.+|..|.+.+++
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888999999999999999999999999998874 444444455555555544444443
No 203
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.14 E-value=0.7 Score=49.20 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred CceeEEeeccCCCCCcccc
Q 001324 173 VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm 191 (1100)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999976
No 204
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=71.00 E-value=1.1 Score=50.02 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=31.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCCcccc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~---n~ti~aYGqtgSGKT~Tm 191 (1100)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 56888887654444555544444331 333442 246889999999999875
No 205
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=70.55 E-value=39 Score=39.14 Aligned_cols=27 Identities=15% Similarity=-0.044 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADN 704 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~ 704 (1100)
..+.++..+...+++...+||...+.+
T Consensus 132 ~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 132 KTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHH
Confidence 444455555555566666665544444
No 206
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.50 E-value=1.7 Score=44.99 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
.+..++.|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455678876 67889999999987
No 207
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=70.14 E-value=1.9 Score=43.88 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=18.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3455667866 677899999999764
No 208
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.00 E-value=25 Score=30.49 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001324 636 DGSKVQIQNLEREIQEKRRQMRILEQRIIENGEA 669 (1100)
Q Consensus 636 ~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~ 669 (1100)
+++..+++.++..-...+.++..|++++.+++..
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666655555543
No 209
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=69.92 E-value=54 Score=28.68 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKEL 805 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee 805 (1100)
.+..+..++.+++.+.......+..|...|-.|+.|+.....+
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334445555555555545555666777777777776655444
No 210
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=69.89 E-value=86 Score=30.64 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 797 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~ 797 (1100)
+..+...|+.+++.+..++..+...+..|....+.|+.
T Consensus 27 l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~ 64 (155)
T 2oto_A 27 LRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALED 64 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344445555555544443333333344444444433
No 211
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=69.46 E-value=1.5 Score=47.99 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=16.4
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001324 172 GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446999999999999975
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.40 E-value=1 Score=48.11 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=28.6
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhc----CCceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAME----GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~----G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+.||.+.+.+..-+.+.. .+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888875544344433 1221110 0111 22446899999999999876
No 213
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.11 E-value=38 Score=30.30 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 794 KLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 794 kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
++++|-..+.-.....-..+..|..++.+|.++|.+|..|
T Consensus 48 ~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 48 RMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444556677777777777777777554
No 214
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=68.96 E-value=88 Score=30.43 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 811 VELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 811 ~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
.+++...+++..+......|+++|...-..+..++
T Consensus 87 ~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 87 SDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444445555555555555555555444444444
No 215
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.60 E-value=2 Score=43.68 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
+..++.|.| ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 445677866 67778999999987
No 216
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.38 E-value=38 Score=30.37 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 809 AAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 809 l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
+..++.+|...+..+..++++|.-|+...++....+
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766655555444
No 217
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.07 E-value=2.9 Score=46.99 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=19.8
Q ss_pred HHHHHhcCCc-e--eEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVN-G--TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n-~--ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.. . .++-||++|+|||+++
T Consensus 32 ~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 32 LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 4455555543 3 6899999999999876
No 218
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.92 E-value=2.1 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=16.9
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|....|+-||++|+|||+.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3433459999999999998763
No 219
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.83 E-value=46 Score=31.27 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELK 814 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~ 814 (1100)
...++.|++++..++.+++.++.+..... .+|..+-..|+.+......+..++.++++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v---~ql~~~i~~Le~eL~e~r~~~q~a~~e~e 71 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVV---LQLKGHVSELEADLAEQQHLRQQAADDCE 71 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777652222 22444444444444433333333333333
No 220
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.53 E-value=44 Score=29.03 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 680 QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 680 ~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
...+..|.+++.-.+.+++.....+...+..|+.+
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 221
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.23 E-value=5.2 Score=38.35 Aligned_cols=11 Identities=27% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHhhc
Q 001324 730 NLLEQQLACQN 740 (1100)
Q Consensus 730 ~~Lq~el~~l~ 740 (1100)
..++.||.+|+
T Consensus 120 ~~lq~QL~~LK 130 (135)
T 2e7s_A 120 DTLTLQLKNLK 130 (135)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=67.02 E-value=2.3 Score=49.25 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 164 ~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+++..++..-.+.|...|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555666566788999999999999974
No 223
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.91 E-value=2.4 Score=47.21 Aligned_cols=42 Identities=36% Similarity=0.511 Sum_probs=25.8
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|+.+++ |+.+.+ .+-..+-.|--..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4666664 344433 23333334533337889999999999874
No 224
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=66.83 E-value=1.1e+02 Score=34.22 Aligned_cols=108 Identities=10% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001324 707 LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENS 786 (1100)
Q Consensus 707 LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~ 786 (1100)
|+.-|..+ ++++...|..|.+.|.+++....+ +...... =.+.++.......+-..
T Consensus 54 Lqg~Ldk~-------er~~~~rIe~L~~~L~~~s~s~~~-------~~~y~~~----------~~~~lk~~~~q~~dndn 109 (390)
T 1deq_A 54 MKGLIDEV-------DQDFTSRINKLRDSLFNYQKNSKD-------SNTLTKN----------IVELMRGDFAKANNNDN 109 (390)
T ss_pred HHHHHHHh-------hhhHHHHHHHHHHHHHHHHHhhhH-------HHHHHHH----------HHHHHHHHHHhhccchH
Confidence 55555544 367777778888888777652211 1111111 11222222222222233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 787 GLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 787 ~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
.+......|+..+.|+++-+..-...++.|..-|.++..+..+|+..++..+
T Consensus 110 ~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~ 161 (390)
T 1deq_A 110 TFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKI 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556667777777776665555777777777777777777777664443
No 225
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.80 E-value=70 Score=29.56 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 001324 697 LEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLA 737 (1100)
Q Consensus 697 le~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~ 737 (1100)
++.+.+++..|.++|+++ ..+.++|++...-|..-|.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a----~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDA----SAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhchhhhhHhh
Confidence 455556666666677766 4455666655554444443
No 226
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.60 E-value=1 Score=48.95 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=27.6
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCCc----eeEEeeccCCCCCcccc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~n----~ti~aYGqtgSGKT~Tm 191 (1100)
.+||.|-+.+.--+.+.+.+..|+-. .++.+++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777766554445555555555432 2344333 22899999999999875
No 227
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.20 E-value=3.1 Score=48.57 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=49.8
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCCccccC--------------CC---CCCCC
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTMH--------------GD---QNSPG 199 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~----n~ti~aYGqtgSGKT~Tm~--------------G~---~~~~G 199 (1100)
.+||.|-|-+.--+.+.+.+.-|+.. ..+.++ --.|+-||+.|+|||++.- |. ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 56788877665556666666665543 334432 3469999999999997641 11 23457
Q ss_pred chhHHHHHHHHHhhcC
Q 001324 200 IIPLAIKDVFSIIQDT 215 (1100)
Q Consensus 200 iipr~~~~lF~~i~~~ 215 (1100)
--.+.++.+|......
T Consensus 286 esek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 286 EGARMVRELFEMARTK 301 (467)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7888899999887654
No 228
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=66.15 E-value=34 Score=29.26 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 001324 803 KELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAM 848 (1100)
Q Consensus 803 ~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~ 848 (1100)
.+--.++..--++|..+|..|..++..|..|+.+.+...+.++.++
T Consensus 22 l~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 22 LETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555566777777777777777777777777766666544
No 229
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=65.84 E-value=1e+02 Score=30.01 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
.++..+.-|.-+++-.+..+.+++++++.|=+++-..
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555566665554444443
No 230
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=65.79 E-value=2.6 Score=47.32 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=29.5
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCce--eEEeeccCCCCCcccc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNG--TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~--ti~aYGqtgSGKT~Tm 191 (1100)
+.||.+++. +.+.. ....++..+..|... .|+-||++|+|||+..
T Consensus 41 ~~~~~ivG~----~~~~~-~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVGQ----LAARR-AAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEESC----HHHHH-HHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccCh----HHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 557777653 33322 223345555566654 7899999999999876
No 231
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.76 E-value=1.7 Score=48.96 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=31.6
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~---n~ti~aYGqtgSGKT~Tm 191 (1100)
...||.|.+.+..-..+...+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 367888887655445555544444221 223332 235888999999999875
No 232
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.76 E-value=1.5 Score=48.62 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=31.0
Q ss_pred eecceecCCCCChhHHHhhhhHHHHH-HHhcCC---ceeEEeeccCCCCCcccc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV---NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~---n~ti~aYGqtgSGKT~Tm 191 (1100)
+.||.|.+.+..-+.+...+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 56888877554444455544444322 122232 246899999999999875
No 233
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.22 E-value=2.5 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=19.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+ +++.++||||||.+.
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3456678877 678899999999873
No 234
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=65.02 E-value=1.6 Score=45.87 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.3
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455678876 678899999999873
No 235
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=64.77 E-value=53 Score=29.86 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001324 813 LKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 813 ~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+..++++++|+|-.|+||-.|
T Consensus 4 L~EvEEKyrKAMVsnAQLDNE 24 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNE 24 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccH
Confidence 567888999999999999776
No 236
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.44 E-value=2.5 Score=47.86 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=21.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+.+++.--.+.|...|+||||||++|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 4455555556688899999999999983
No 237
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.33 E-value=43 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001324 640 VQIQNLEREIQEKRRQMRILEQRIIENGE 668 (1100)
Q Consensus 640 ~qieeLed~l~~~k~~i~~Le~ri~~sr~ 668 (1100)
.++++++..-...+.++..|++++.+++.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~ 35 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQS 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443
No 238
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.19 E-value=2.2 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=19.7
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 164 ~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.++..++.|.| +++.|+||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 34555677866 678899999999873
No 239
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=64.16 E-value=19 Score=30.66 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 642 IQNLEREIQEKRRQMR 657 (1100)
Q Consensus 642 ieeLed~l~~~k~~i~ 657 (1100)
+.+|++.+..+...+.
T Consensus 21 i~eLq~~L~~K~eELr 36 (72)
T 3nmd_A 21 LRDLQYALQEKIEELR 36 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555444444444
No 240
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.91 E-value=3.5 Score=46.31 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcC-CceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEG-VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G-~n~ti~aYGqtgSGKT~Tm 191 (1100)
.|.++.+++ ++...+.+.. .+..++.| ....|+-||++|+|||+++
T Consensus 16 ~~~p~~l~g----r~~~~~~l~~-~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRDAAI-AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHHHHH-HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344555544 3334433322 34444444 3458999999999999876
No 241
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.62 E-value=48 Score=29.60 Aligned_cols=9 Identities=44% Similarity=0.486 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 001324 706 ILQEQLQNK 714 (1100)
Q Consensus 706 ~LqeqL~~a 714 (1100)
.|..+|..|
T Consensus 6 ~L~~~L~~a 14 (94)
T 3jsv_C 6 DLRQQLQQA 14 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 242
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.45 E-value=2.6 Score=49.85 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=30.0
Q ss_pred eecceecCCCCChhHHHhhhhHHHH-----HHHhcCCceeEEeeccCCCCCcccc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVV-----KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv-----~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..||.+.+....-..+++.+..++- ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4566666554444555554444321 1111234567999999999999865
No 243
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=62.69 E-value=3 Score=43.52 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455677876 567789999999874
No 244
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=62.52 E-value=36 Score=30.14 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRIL 707 (1100)
Q Consensus 640 ~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~L 707 (1100)
..++.|+..|......+..|+.++.+.--+...- ..++.|..++.+.+.+|+.+.....+|
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~-------~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPH-------EQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666544332211 223344444444444444444444333
No 245
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=62.44 E-value=56 Score=28.33 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 795 LAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 795 le~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
+.+|....+..+..+..++.+...+...|..+..+|++++...+
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666666666666655533
No 246
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=62.26 E-value=3 Score=43.03 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3455677876 667789999999864
No 247
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=62.01 E-value=1.8 Score=50.40 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=30.1
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcC---CceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG---VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G---~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+.||.|.+.+..-..+...+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888877543333343333333221 22333 2356889999999999876
No 248
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.42 E-value=98 Score=35.92 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=6.5
Q ss_pred eeEEEecCCCC
Q 001324 319 QLNLIDLAGSE 329 (1100)
Q Consensus 319 ~L~lVDLAGsE 329 (1100)
.|..+||.|..
T Consensus 238 ~L~~L~l~~N~ 248 (487)
T 3oja_A 238 NLEHFDLRGNG 248 (487)
T ss_dssp TCCEEECTTCC
T ss_pred CCCEEEcCCCC
Confidence 45666776654
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=61.42 E-value=3.4 Score=44.65 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=23.5
Q ss_pred HHHHHHHhcCC---ceeEEeeccCCCCCccccC
Q 001324 163 RPVVKAAMEGV---NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 163 ~~lv~~~l~G~---n~ti~aYGqtgSGKT~Tm~ 192 (1100)
...+..+++|. --||+-||+.|+|||+...
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34567788887 3489999999999998753
No 250
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=60.94 E-value=1.8e+02 Score=31.20 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHh
Q 001324 678 DMQQTVTRLMSQCNEKAFELE-IKSADNRILQEQLQNK 714 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele-~~~ad~~~LqeqL~~a 714 (1100)
.+++...+|..+|.-...|+. ++..+.++|+.+|.--
T Consensus 63 ~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~ 100 (273)
T 3s84_A 63 QVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPH 100 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344455555555555555554 3445555666666544
No 251
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.87 E-value=2.3 Score=46.63 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=26.6
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCCcccc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l--~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..||.+++.. .+... ...++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQE----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCH----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHH----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4677766543 22221 122333332 234567888999999999875
No 252
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=60.61 E-value=1.8 Score=44.27 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHhcCCceeEEeeccCCCCCccccC
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++.|.+ ++.+|+||+|||++..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 34556765 5678999999999863
No 253
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=60.34 E-value=53 Score=29.89 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 001324 596 GGMTSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN--DPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMAN 673 (1100)
Q Consensus 596 ~~~~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~--~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~ 673 (1100)
|+.|.+.++. -+-+..|+.+...+..++.....++.. ..++=+..+.+.+..+++-+.-+...+=+.. ...
T Consensus 4 ~~~~~~~~~m-SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r---~~p--- 76 (102)
T 2qyw_A 4 GIHMAASAAS-SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELR---YAP--- 76 (102)
T ss_dssp ---CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSC---
T ss_pred cccccCcccH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCC---
Confidence 5667777775 477778888888888888877777733 2344445566777777666666653222111 111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 674 ASMVDMQQTVTRLMSQCNEKAFELEIKSAD 703 (1100)
Q Consensus 674 ~~~~el~~~~~~L~r~l~ek~~Ele~~~ad 703 (1100)
.+.+..+..++++..-+|+.+..+
T Consensus 77 ------~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 77 ------LTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 234566777777777777665444
No 254
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=60.01 E-value=62 Score=28.63 Aligned_cols=12 Identities=17% Similarity=-0.047 Sum_probs=4.7
Q ss_pred hhhHHhhhhccc
Q 001324 859 SDGMKAGRKGRL 870 (1100)
Q Consensus 859 l~~~~~~~~e~l 870 (1100)
|+...+++.+++
T Consensus 75 LE~~l~el~~rl 86 (89)
T 3bas_A 75 LENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 333333444443
No 255
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=59.97 E-value=42 Score=26.19 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQS 631 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~ 631 (1100)
.||.|..|++.|..|+..++.|++|=+.++
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~l 33 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHL 33 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Confidence 589999999999999999999998655433
No 256
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.80 E-value=1.2e+02 Score=35.03 Aligned_cols=12 Identities=0% Similarity=-0.280 Sum_probs=6.3
Q ss_pred CChHHHHHHHHH
Q 001324 265 LSPGHALSFIAA 276 (1100)
Q Consensus 265 ~s~~e~~~~l~~ 276 (1100)
.+.+|+..+...
T Consensus 141 ~Twdel~~~a~~ 152 (471)
T 3mq9_A 141 KTWEEIPALDKE 152 (471)
T ss_dssp SBGGGHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 355666555443
No 257
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.63 E-value=3.5 Score=45.23 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+..++++++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 445667774456789999999999873
No 258
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.42 E-value=46 Score=29.29 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 806 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~ 806 (1100)
.+..+..++.+++.+.......+..|...|-+|+.|+.....+.
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444555555566655555566667777777777776655443
No 259
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.42 E-value=1.6e+02 Score=33.96 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLK 775 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk 775 (1100)
++.+++.+.++++++|
T Consensus 455 ~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 455 LNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3344444444444443
No 260
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=59.34 E-value=3.7 Score=42.61 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456678764 67789999999874
No 261
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=59.18 E-value=4.2 Score=47.49 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=30.1
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHHHHhcCCc--eeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVKAAMEGVN--GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n--~ti~aYGqtgSGKT~Tm 191 (1100)
.|.||.|.+ |+.+... +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 356777765 4444442 2345566666653 36888999999999875
No 262
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.16 E-value=4 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=17.1
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544458999999999999763
No 263
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=58.98 E-value=3.8 Score=43.34 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.| ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345677876 567789999999864
No 264
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.83 E-value=2.9 Score=46.32 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=27.0
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHh--cCCceeEEeeccCCCCCcccc
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAM--EGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l--~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.||.+.+. +.+... ...++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 56776653 333332 222344333 344567999999999999865
No 265
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.52 E-value=4.8 Score=42.81 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=32.4
Q ss_pred ccccccccccccceEEeC-CCCcccchhhhhc------CCCCCCCcccccceee
Q 001324 1051 SHMCKVCFESPTAAILLP-CRHFCLCKSCSLA------CSECPICRTKISDRLF 1097 (1100)
Q Consensus 1051 ~~~C~iC~~~~~~~vl~p-C~H~~~C~~C~~~------~~~CP~Cr~~i~~~i~ 1097 (1100)
-..|.+|++--..-+..| |+|. |-..|... -..||.|+.+...-++
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 458999977666555555 7776 77888543 2479999998766543
No 266
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.45 E-value=2.7 Score=47.07 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=16.7
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001324 172 GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+....|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34568899999999999876
No 267
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=58.14 E-value=3.7 Score=44.21 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=16.5
Q ss_pred CceeEEeeccCCCCCccccC
Q 001324 173 VNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
-...|...|+||||||++|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34577889999999999984
No 268
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=57.97 E-value=3.8 Score=39.56 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001324 172 GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45567899999999999864
No 269
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.96 E-value=76 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 812 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 812 E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
....|..++..|..+|..|..++...+.+...|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666655555555555444
No 270
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.69 E-value=3.9 Score=43.04 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.| +++.++||||||.+.
T Consensus 60 i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCcCHHHHHH
Confidence 445667876 566789999999874
No 271
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=57.68 E-value=50 Score=37.33 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=35.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHH---HHHHHHHHHHHHHHHHHHHHH
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKV---QIQNLEREIQEKRRQMRILEQ 661 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~---qieeLed~l~~~k~~i~~Le~ 661 (1100)
.+.++.+.++++.+.........+.+.|.+++.....+++. .++--.++++-.+.++.+-|+
T Consensus 118 ~~~~e~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~ 182 (373)
T 3hhm_B 118 EDNIEAVGKKLHEYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQER 182 (373)
T ss_dssp CC--CGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666767777777777777777666655554 244455555556665554444
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.67 E-value=2.9 Score=43.53 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHhcCCc--eeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVN--GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n--~ti~aYGqtgSGKT~Tm~ 192 (1100)
+..++.|.- -+|+-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 344555532 469999999999998864
No 273
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=57.64 E-value=3.6 Score=43.18 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..++..+..|- .++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34455566665 4677899999999754
No 274
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=57.37 E-value=45 Score=30.60 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001324 602 QMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQ-IQNLEREIQEKRRQMRILEQRIIENG 667 (1100)
Q Consensus 602 ~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~q-ieeLed~l~~~k~~i~~Le~ri~~sr 667 (1100)
.+.+|.+.+...+..+...++-+++.++++..++++++.+ +..=+.++..++.+|..|.+.+++..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888899999999999999999999998874 44445555555555555555555444
No 275
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=57.20 E-value=4.2 Score=39.18 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.1
Q ss_pred CceeEEeeccCCCCCccccC
Q 001324 173 VNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.+..|+-||++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34568889999999998753
No 276
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.88 E-value=43 Score=30.42 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 758 DELRKKVQSQETENEKLKLEHVQLSE 783 (1100)
Q Consensus 758 ~~l~~~~~~lk~elE~lk~e~~~l~e 783 (1100)
...++.+..+++|+|.|+..+..+.+
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888889999998888755544
No 277
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.84 E-value=4.4 Score=42.25 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.6
Q ss_pred HHHHhcCCceeEEeeccCCCCCccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
+..++.|.| ++..++||||||.+
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 344677876 56678999999987
No 278
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=56.56 E-value=4.4 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3456677877 678899999999873
No 279
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.45 E-value=12 Score=33.93 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 001324 599 TSDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN 633 (1100)
Q Consensus 599 ~~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~ 633 (1100)
...+++.|++.++.|.+|+..|.++++.|.-++..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999988777665
No 280
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=56.12 E-value=4.6 Score=42.85 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445667866 566789999999874
No 281
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=56.00 E-value=39 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 802 AKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 802 ~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
+....+.+......|++++..|+.+|.+|+.=
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455666666777778888888888877653
No 282
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=55.60 E-value=59 Score=28.49 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 785 NSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSL 825 (1100)
Q Consensus 785 ~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~ 825 (1100)
.++|..++.+++.++...+++.+.+..+++....++++|..
T Consensus 39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45577777888888888888888888888888777777743
No 283
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.56 E-value=5.3 Score=44.45 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999986
No 284
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.70 E-value=4.1 Score=45.17 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=26.0
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|+.+++...- ...+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDHA--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCTT--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHHH--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 46666654322 2233334445533448899999999999863
No 285
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.32 E-value=42 Score=32.10 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 001324 761 RKKVQSQETENEKLKLEHVQLSEENSGL 788 (1100)
Q Consensus 761 ~~~~~~lk~elE~lk~e~~~l~e~~~~L 788 (1100)
+.+...+..|+|.|-..+ +.++|...
T Consensus 66 E~~~~~ie~ElE~LTasL--FeEAN~MV 91 (135)
T 2e7s_A 66 EEEADKLNKEVEDLTASL--FDEANNLV 91 (135)
T ss_dssp HHTTHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 334444555566655555 55554444
No 286
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=53.87 E-value=24 Score=23.07 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 800 SYAKELASAAAVELKNLAGEVTKL 823 (1100)
Q Consensus 800 ~~~~ee~~~l~~E~~~l~e~v~kL 823 (1100)
++++++.-++..|...|.++++.|
T Consensus 3 yqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHhcc
Confidence 456666666666666666666654
No 287
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=53.79 E-value=7 Score=45.76 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=26.8
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.||.|++. +... ..++..+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr----~~~i----~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----HHHH----HHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 46666654 2222 234444444555677889999999998764
No 288
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.77 E-value=3.3 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..+++|.| ++..++||||||.+.
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445667766 467789999999873
No 289
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=53.21 E-value=3.5 Score=37.33 Aligned_cols=29 Identities=24% Similarity=0.660 Sum_probs=23.0
Q ss_pred ccccccccc-ccceEE--eCCCCcccchhhhhc
Q 001324 1052 HMCKVCFES-PTAAIL--LPCRHFCLCKSCSLA 1081 (1100)
Q Consensus 1052 ~~C~iC~~~-~~~~vl--~pC~H~~~C~~C~~~ 1081 (1100)
..|.||.+. ....+. ++|+|. ||..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 479999964 556666 899999 99999654
No 290
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.86 E-value=95 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 812 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 812 E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
.+..|..++..|..+|..|..++..++.+...|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777666666666554
No 291
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=52.77 E-value=4.3 Score=44.84 Aligned_cols=42 Identities=19% Similarity=0.577 Sum_probs=31.2
Q ss_pred cccccccccccccceEEeC----CCC-cccchhhhhcC----CCCCCCccc
Q 001324 1050 NSHMCKVCFESPTAAILLP----CRH-FCLCKSCSLAC----SECPICRTK 1091 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~p----C~H-~~~C~~C~~~~----~~CP~Cr~~ 1091 (1100)
....|+||-..+.-.++.. =|+ ++.|..|.... .+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4568999999998877752 343 45899996433 469999986
No 292
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.45 E-value=3.6e+02 Score=32.23 Aligned_cols=149 Identities=12% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCc-cchHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHH
Q 001324 615 GEIAFSSSNLKRLVDQSVNDP-DGSKVQ--IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCN 691 (1100)
Q Consensus 615 ~e~~~l~~el~~L~~q~~~~~-~~l~~q--ieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ 691 (1100)
+-...+...++.+..++...+ ...+.. +++--.........|. ++...+++....++.=..+-.
T Consensus 431 ~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~il-------------q~d~~l~~~~k~~~~~~~~~e 497 (592)
T 1f5n_A 431 GGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAIL-------------QTDQTLTEKEKEIEVERVKAE 497 (592)
T ss_dssp THHHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHH-------------HHCSSSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 001324 692 EKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETEN 771 (1100)
Q Consensus 692 ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~el 771 (1100)
.-+.|.+.++....++++.++.. .+.+++++++|++.| +++-..+..|.
T Consensus 498 ~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~e~~~ql~~km------------------------e~~~~~~~~e~ 546 (592)
T 1f5n_A 498 SAQASAKMLHEMQRKNEQMMEQK-------ERSYQEHLKQLTEKM------------------------ENDRVQLLKEQ 546 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH------------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 772 EKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGE 819 (1100)
Q Consensus 772 E~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~ 819 (1100)
+...... +.+++.-|.+. .++.++.+..|+.+|..+
T Consensus 547 ~~~~~~~--~~~~~~~~~~g----------~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 547 ERTLALK--LQEQEQLLKEG----------FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHH--HHHHHHHHHHT----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
No 293
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.39 E-value=3.6 Score=42.21 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|+-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999875
No 294
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=52.30 E-value=5.5 Score=46.46 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
.+..++.|.+..+++.|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34566777667789999999999977
No 295
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.65 E-value=2.2e+02 Score=32.38 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001324 604 DLLVEQVKMLAGEIAFSSSNLK 625 (1100)
Q Consensus 604 d~l~eq~k~l~~e~~~l~~el~ 625 (1100)
|.|..+.+.+...+..+...++
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~ 48 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQ 48 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHH
Confidence 3455555555556655555444
No 296
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.46 E-value=5.5 Score=43.11 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999876
No 297
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=51.23 E-value=87 Score=27.15 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNL 731 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~ 731 (1100)
+|..++..|..++.+-..+-+.+.+++..+.++|+-+ +-+.-+++..+.+
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K----I~eL~elRqgLak 73 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS----LFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Confidence 5555566666666666666666666666666666666 4455555554433
No 298
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=51.14 E-value=5.7 Score=41.88 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHhcCCceeEEeeccCCCCCccccC
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++.|.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34556655 6678999999999853
No 299
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.96 E-value=7.5 Score=43.95 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=19.4
Q ss_pred HHHhcC---CceeEEe--eccCCCCCcccc
Q 001324 167 KAAMEG---VNGTVFA--YGVTSSGKTHTM 191 (1100)
Q Consensus 167 ~~~l~G---~n~ti~a--YGqtgSGKT~Tm 191 (1100)
..+..| -...++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 4567888 999999999876
No 300
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=50.88 E-value=6 Score=44.60 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345667775566788899999999873
No 301
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.53 E-value=5.8 Score=44.30 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|-+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345667774456788899999999864
No 302
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=50.36 E-value=7 Score=45.51 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=28.0
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+||.|++ |+.+.. ....+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~-~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLA-AGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHS-TTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHh-chHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3555544 455542 1234444444565568999999999999875
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.09 E-value=4.2 Score=47.79 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=28.2
Q ss_pred ceecceecCCCCChhHHHhhhhHHHH-HHHhcC----CceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVV-KAAMEG----VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv-~~~l~G----~n~ti~aYGqtgSGKT~Tm 191 (1100)
.++||.|.+.+..-..+.+. +..+- ...+.+ ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46788887754433333331 11110 011222 2245899999999999875
No 304
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=49.97 E-value=5.9 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.| ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 345677877 677899999999764
No 305
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.66 E-value=1.1e+02 Score=25.96 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhcc
Q 001324 676 MVDMQQTVTRLMSQCNE-----KAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNG 741 (1100)
Q Consensus 676 ~~el~~~~~~L~r~l~e-----k~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~ 741 (1100)
+.+++.+...+-.+-+. ....++.+......-.+.|..+ -.++.+++..++.|+-+|..++.
T Consensus 11 l~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~----k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA----KQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcC
No 306
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=49.55 E-value=3.1e+02 Score=31.77 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 001324 603 MDLLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 603 ~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~ 657 (1100)
.|.|..+.+.+...+..|...+..|..... ..+..++.|+..+.+.+.++.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts----~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTST----TMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhccccccc
Confidence 456666656666666666666655543322 222234445555555555444
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.43 E-value=5.1 Score=43.55 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999875
No 308
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.11 E-value=6.3 Score=46.77 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=16.6
Q ss_pred hcCCceeEEeeccCCCCCccccC
Q 001324 170 MEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 170 l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
-.|.+ |+..|+||||||++|.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35665 6678999999999873
No 309
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.09 E-value=9.8 Score=41.40 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=22.1
Q ss_pred hhHHHHHHHhcCC-----ceeEEeeccCCCCCcccc
Q 001324 161 AARPVVKAAMEGV-----NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 161 ~~~~lv~~~l~G~-----n~ti~aYGqtgSGKT~Tm 191 (1100)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4555666666553 246888999999999864
No 310
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=48.89 E-value=1.2e+02 Score=34.86 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 001324 902 RKQREAALEAALAEKEFLEDEYR 924 (1100)
Q Consensus 902 ~~~r~~aLE~el~~k~~~~~el~ 924 (1100)
+...++++++.-.++.....+|.
T Consensus 404 v~~~~a~~d~~~~~~s~~~~~ls 426 (551)
T 2b5u_A 404 VNNKQAAFDAAAKEKSDADAALS 426 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhhhhh
Confidence 44456666665555555555555
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.63 E-value=4.9 Score=45.65 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.2
Q ss_pred CCceeEEeeccCCCCCccccC
Q 001324 172 GVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.-...|...|+||||||++|.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 345678889999999999984
No 312
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=48.17 E-value=1.5e+02 Score=26.64 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 788 LHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 788 L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
|.---=.|+.....+.+++.++....+....++..|..+..+|..|-..+......|.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333345677788888888888888888888888888888888888777777777775
No 313
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.86 E-value=1.6e+02 Score=26.69 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 809 AAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 809 l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
...++..+..++..|..+...+..+
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~ 93 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERE 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333333
No 314
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=47.81 E-value=4.8 Score=44.49 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCccccC
Q 001324 175 GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~ 192 (1100)
..|+-||++|+|||+.+.
T Consensus 47 ~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CCEEEESCCCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 367889999999998763
No 315
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=47.79 E-value=57 Score=29.57 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHH
Q 001324 640 VQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNE 692 (1100)
Q Consensus 640 ~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~e 692 (1100)
+..++|+++.+....-=..+-+...+.|+.. ++-++..+.+|++++.+
T Consensus 53 iArQKLkdAe~~~E~DPDevNK~tl~~R~~~-----Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 53 TARQKLKDAEKAVEVDPDDVNKSTLQNRRAA-----VSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4555666666665544333333333333222 22445555555555444
No 316
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=47.61 E-value=6.5 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 445567766 677899999999764
No 317
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=47.45 E-value=83 Score=30.33 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001324 896 KLELQARKQREAALEAAL 913 (1100)
Q Consensus 896 k~~~~a~~~r~~aLE~el 913 (1100)
+.++.+..+....++++|
T Consensus 121 rRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 121 RRDLDASREAKKQVEKDL 138 (146)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333444443
No 318
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.29 E-value=7 Score=42.60 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=17.9
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345567765 567789999999865
No 319
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=46.92 E-value=1e+02 Score=24.92 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 796 AEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 796 e~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
+..+.++-.-+..+..|+..+..++.+|+.+|..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 344555666677777788888888888888887774
No 320
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.54 E-value=4 Score=35.18 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=23.8
Q ss_pred cccccccccccccceEEeCC----CCcccchhhhh
Q 001324 1050 NSHMCKVCFESPTAAILLPC----RHFCLCKSCSL 1080 (1100)
Q Consensus 1050 ~~~~C~iC~~~~~~~vl~pC----~H~~~C~~C~~ 1080 (1100)
....|.+|.++--++-|+-| .|. ||..|..
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr 47 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSR 47 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCe-eeccccH
Confidence 34589999999888877777 465 9999954
No 321
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=46.43 E-value=6.6 Score=43.12 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999863
No 322
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.91 E-value=3.7 Score=48.63 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=28.0
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcCC----ceeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGV----NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~----n~ti~aYGqtgSGKT~Tm 191 (1100)
.++||.|.+.+..-..+.+ ++..+-. .++..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4778888775433333322 1111100 122222 224899999999999876
No 323
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.59 E-value=2.2e+02 Score=27.63 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 803 KELASAAAVELKNLAGEVTKLSLQNAKLEKELLAAR 838 (1100)
Q Consensus 803 ~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~ 838 (1100)
+.+...+..+.+.|..++..|...|..|.+++...+
T Consensus 42 ~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 42 MEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555554444333
No 324
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=44.81 E-value=7.8 Score=47.34 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45555543333 4567999999999974
No 325
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=44.67 E-value=1.1e+02 Score=30.05 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001324 645 LEREIQEKRRQMR 657 (1100)
Q Consensus 645 Led~l~~~k~~i~ 657 (1100)
|+.+++..+.-+.
T Consensus 91 L~~E~~dR~~L~~ 103 (152)
T 4fla_A 91 LAAELEDRRQLAR 103 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 326
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=44.62 E-value=8.1 Score=43.69 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.| ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 345677876 467889999999864
No 327
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.38 E-value=7.9 Score=46.54 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=19.1
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 164 ~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.++..+..|.+.++++ ++||||||++++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444444576655544 999999999974
No 328
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.26 E-value=92 Score=24.80 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 798 EASYAKELASAAAVEL 813 (1100)
Q Consensus 798 e~~~~~ee~~~l~~E~ 813 (1100)
++..+++++.++-..+
T Consensus 33 ~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 33 DAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444444444333
No 329
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=44.16 E-value=4.7 Score=38.87 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCcccccccccccccc-----ceEEeCCCCcccchhhhh
Q 001324 1025 LVARLKARMQEMKEKEQKYQGNGDPNSHMCKVCFESPT-----AAILLPCRHFCLCKSCSL 1080 (1100)
Q Consensus 1025 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~iC~~~~~-----~~vl~pC~H~~~C~~C~~ 1080 (1100)
.+.+|+.+++.++.... ..+...|.+|..... ..+-.-|.|. +|..|..
T Consensus 35 ri~kL~~~l~~~k~~~~------~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~ 88 (134)
T 1zbd_B 35 RIGRLVDRLETMRKNVA------GDGVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGV 88 (134)
T ss_dssp HHHHHHHHHHHHHHTCC------SCSSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEE
T ss_pred HHHHHHHHHHHHHHHhc------cCCCccccccCCCcccccCCCCCCCCCCcc-cccccCC
Confidence 45566666666654322 135668999987653 1222344444 5555543
No 330
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.11 E-value=49 Score=38.65 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
+.+..++.+-..++.++++++.+.+.++.+.-.+.... +...++..+.+.+.++++.|+.+...+++++
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~-----------~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAK-----------EDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777778888888888776666433221111 2233444455555555555555555554443
Q ss_pred H
Q 001324 835 L 835 (1100)
Q Consensus 835 ~ 835 (1100)
.
T Consensus 102 ~ 102 (485)
T 3qne_A 102 R 102 (485)
T ss_dssp H
T ss_pred H
Confidence 3
No 331
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.03 E-value=6.7 Score=43.56 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.3
Q ss_pred EEeeccCCCCCccccC
Q 001324 177 VFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm~ 192 (1100)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999863
No 332
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=44.03 E-value=6.2 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=16.9
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|....++-||++|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 3444448999999999998753
No 333
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=43.69 E-value=1.5e+02 Score=25.52 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 767 QETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNL 816 (1100)
Q Consensus 767 lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l 816 (1100)
+++.+++...|+..|..-.+.|..-++|+..=+..++.+-..+..++..+
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454444444444344444445444443333333333333333333
No 334
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.22 E-value=7.9 Score=42.47 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=16.9
Q ss_pred CCceeEEeeccCCCCCcccc
Q 001324 172 GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678999999999999864
No 335
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=42.99 E-value=9.3 Score=45.11 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=19.2
Q ss_pred HHHhcCCceeEEeeccCCCCCcccc
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..++.|.+..++..++||||||++.
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHHH
Confidence 4566774456788899999999873
No 336
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.58 E-value=75 Score=25.20 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001324 816 LAGEVTKLSLQNAKLEKELLAARESMHSR 844 (1100)
Q Consensus 816 l~e~v~kL~~qn~~L~~EL~~~~~~~~~~ 844 (1100)
+...+..|.++|.+|.+-|...++++..+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 337
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.99 E-value=1.7e+02 Score=25.31 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001324 638 SKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 638 l~~qieeLed~l~~~k~~i~ 657 (1100)
++..+.+|+.+--+++.++-
T Consensus 31 Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666665
No 338
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.64 E-value=7.9 Score=48.97 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=27.3
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.||.|++.+ + ....++.-+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr~----~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGRD----E----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSCH----H----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCcH----H----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 566666533 2 23334444445555567889999999999875
No 339
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=41.56 E-value=8.1 Score=43.37 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999875
No 340
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=41.48 E-value=9.8 Score=39.47 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=22.6
Q ss_pred hHHHHHHHhcC-C--ceeEEeeccCCCCCccccC
Q 001324 162 ARPVVKAAMEG-V--NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 162 ~~~lv~~~l~G-~--n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+-+-++.++.| + ...+.-+|++|+|||+.+.
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 34567777754 2 3467889999999999863
No 341
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=41.10 E-value=9.2 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
.+..++.|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455677865 67889999999984
No 342
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=41.07 E-value=78 Score=27.09 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 806 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~ 806 (1100)
.+.+.+...+..+.+++.+++.+.......+..|...|-+|+.|+.....+.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLL 56 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777788888888877777777888888888888876665443
No 343
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=40.95 E-value=7.3 Score=41.94 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=16.5
Q ss_pred HHHhcCCceeEEeeccCCCCCccccC
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
..++.|.++ +..++||+|||.+..
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 334555444 348999999999864
No 344
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.93 E-value=66 Score=26.53 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001324 793 QKLAEEASYAK 803 (1100)
Q Consensus 793 ~kle~e~~~~~ 803 (1100)
..|..|..+++
T Consensus 47 ~~L~~E~~~Lk 57 (63)
T 1ci6_A 47 DSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 345
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=40.80 E-value=1.8e+02 Score=25.19 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 773 KLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQ 826 (1100)
Q Consensus 773 ~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~q 826 (1100)
.|.++++.|--..+.|...+-.++......+++...+..+++.-..++..|+.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444555555666666666666666666665555555555433
No 346
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=40.75 E-value=10 Score=42.44 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=18.9
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3456677866 566789999999864
No 347
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.65 E-value=36 Score=34.32 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 809 AAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 809 l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
+..++++....|.+|+.+|..|..+|..+.+.+..+.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~ 47 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQ 47 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555444444444443
No 348
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.50 E-value=40 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 812 ELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 812 E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
.+..|..++..|..+|..|..++..++.+...+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665555443
No 349
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.39 E-value=11 Score=40.96 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=16.7
Q ss_pred cCCceeEEeeccCCCCCccccC
Q 001324 171 EGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 171 ~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|.-..++-||+.|+|||+...
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4443348999999999998763
No 350
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.23 E-value=14 Score=40.96 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.5
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999876
No 351
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=40.11 E-value=1.3e+02 Score=35.39 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
+.+..+..+-..++.++++++.+.+.++.+.-.+......- + ....++..++..+.+.+.++++.|..+...+++++
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~--~-~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNS--Q-VQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT--T-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--c-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777778888888888776666533221111000 0 00001334445555555555555555555555554
Q ss_pred H
Q 001324 835 L 835 (1100)
Q Consensus 835 ~ 835 (1100)
.
T Consensus 147 ~ 147 (501)
T 1wle_A 147 Y 147 (501)
T ss_dssp H
T ss_pred H
Confidence 3
No 352
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=40.02 E-value=1.4e+02 Score=23.97 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 001324 684 TRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLA 737 (1100)
Q Consensus 684 ~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~ 737 (1100)
..+.+.+.+...+..........+...++.. .......++.+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~----~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEI----FEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344444444334444444444444444444 3344445555555555554
No 353
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.75 E-value=2.2e+02 Score=25.82 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 001324 644 NLEREIQEKRRQMR 657 (1100)
Q Consensus 644 eLed~l~~~k~~i~ 657 (1100)
.++..+...+..+.
T Consensus 28 ~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 28 ELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 354
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=39.53 E-value=10 Score=45.97 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.9
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+..++..|++|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3567889999999999863
No 355
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.49 E-value=1.8e+02 Score=25.05 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 763 KVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLA 817 (1100)
Q Consensus 763 ~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~ 817 (1100)
.+..-++||+.++.-..+|.+....|...=.+|..|...+.....-+....+.|.
T Consensus 19 ~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 19 EMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665566666666666666666666666666555555544443
No 356
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.34 E-value=13 Score=44.31 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+|..++.|-+-.+++.++||||||.+.
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 445666665567889999999999873
No 357
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=39.17 E-value=14 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 4456778877 677889999999863
No 358
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.15 E-value=43 Score=26.78 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 805 LASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 805 e~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
++.+|..|+..|..++..|..+++.|..+|
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665544
No 359
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=38.52 E-value=15 Score=46.04 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=35.4
Q ss_pred ceecceecCCCCChhHHHhhhhHHHHH-HHhcCCc----eeEEeeccCCCCCcccc
Q 001324 141 AYAFDRVFGPHANSQEVYDVAARPVVK-AAMEGVN----GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 141 ~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G~n----~ti~aYGqtgSGKT~Tm 191 (1100)
...||.|-|-+..-+.+.+.+.-|+.. .++.++. ..|+-||+.|+|||+..
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356777777666666676655555542 3455554 36999999999999764
No 360
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.17 E-value=17 Score=45.14 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=26.7
Q ss_pred ecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 143 AFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 143 ~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.||.|.+. +... ..++..+..+....|+-||++|+|||....
T Consensus 178 ~ld~iiG~----~~~i----~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIGR----SKEI----QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCCC----HHHH----HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCc----hHHH----HHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 46666653 3322 234444445566668999999999998753
No 361
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.13 E-value=4.6e+02 Score=30.00 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001324 721 ENKKLQEKVNLLEQQLACQNGDKSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEAS 800 (1100)
Q Consensus 721 ~~~el~~~~~~Lq~el~~l~~~~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~ 800 (1100)
+++.....|..|++.|.+++.... .+......+. +.|+.......+-...+......|+..+.
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~-------~s~~y~~~~~----------~~lk~~~~q~~dndn~~~e~S~eLe~ri~ 121 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYK-------TSNRVIVETI----------NILKPGLEGAQQLDENYGHVSTELRRRIV 121 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-------HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcc-------hHHHHHHHHH----------HHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 356677777777777777765221 1111111111 12222222222222234445566777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 801 YAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 801 ~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
|+++-+..-...+..|..-+.++..+..+|+..+..+.+.
T Consensus 122 yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~ 161 (491)
T 1m1j_A 122 TLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRA 161 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766655788888888888888888887776655543
No 362
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=38.10 E-value=12 Score=43.22 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.+ +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 345678876 577889999999864
No 363
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.97 E-value=36 Score=28.60 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 001324 691 NEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQL 736 (1100)
Q Consensus 691 ~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el 736 (1100)
.++.+.+..+..++++|+..|+.+ -.++.+|+.++.+++.=+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~k----d~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEK----EEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 344455666667777788888887 556677777666655443
No 364
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=37.90 E-value=11 Score=41.38 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+..++.|.. .++..++||||||.++
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 345566632 3567899999999874
No 365
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=37.83 E-value=58 Score=37.81 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 755 EYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 755 ~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL 834 (1100)
+.+..+..+-..++.++++++.+.+.++.+.-.+.... +...++..+.+.+.++++.|..+...+++++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----------EPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777778888888888766666532221110 2234445555555555555555555555444
Q ss_pred H
Q 001324 835 L 835 (1100)
Q Consensus 835 ~ 835 (1100)
.
T Consensus 100 ~ 100 (455)
T 2dq0_A 100 D 100 (455)
T ss_dssp H
T ss_pred H
Confidence 3
No 366
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=37.70 E-value=14 Score=38.22 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 164 PVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 164 ~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+++++-.|-- +.-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHHhccCCCE--EEEECCCCCCHHHHH
Confidence 34555555654 445799999999886
No 367
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.60 E-value=2.4e+02 Score=25.65 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001324 826 QNAKLEKELLAAR 838 (1100)
Q Consensus 826 qn~~L~~EL~~~~ 838 (1100)
....|..++...+
T Consensus 66 ~~~~L~~~~~~lk 78 (103)
T 4h22_A 66 AHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 368
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.57 E-value=7.5 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=18.7
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667866 567799999999873
No 369
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=37.28 E-value=1.2e+02 Score=24.36 Aligned_cols=29 Identities=34% Similarity=0.349 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 812 ELKNLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 812 E~~~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
-+..|+.+|..|+.+|..|..++...+..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888887766644
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=37.28 E-value=17 Score=38.50 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|+..|+.|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999753
No 371
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.85 E-value=49 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 815 NLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 815 ~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
.|+++|..|..+|..|+.|....++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667777777777777777665554
No 372
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=36.80 E-value=13 Score=37.81 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHhc-CCc--eeEEeeccCCCCCccccC
Q 001324 163 RPVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 163 ~~lv~~~l~-G~n--~ti~aYGqtgSGKT~Tm~ 192 (1100)
-+-++.++. |+. ..+..+|++|+|||..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 356777775 554 467889999999998764
No 373
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.68 E-value=11 Score=42.28 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999875
No 374
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.40 E-value=2e+02 Score=24.46 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNL 731 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~ 731 (1100)
+|..++..|..++.+-..+-+.+..++..+.++|+-+ +-+.-+++..+.+
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K----I~eL~elrq~Lak 67 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK----IFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Confidence 5666666666666666666666667777777777777 4455555555433
No 375
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=36.26 E-value=14 Score=43.58 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455677876 567789999999874
No 376
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=36.24 E-value=4.3e+02 Score=28.28 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=23.9
Q ss_pred CCccchhhHHHHHHHH---HHHHHHHHHHHHHHHHhhhhcCCccch
Q 001324 596 GGMTSDQMDLLVEQVK---MLAGEIAFSSSNLKRLVDQSVNDPDGS 638 (1100)
Q Consensus 596 ~~~~~~~~d~l~eq~k---~l~~e~~~l~~el~~L~~q~~~~~~~l 638 (1100)
.|=..+.++.|...++ .+-.++...-.+.-.+.++++....+|
T Consensus 24 ~FW~~~g~~~l~~r~~~g~~~~~el~~f~keRa~iE~eYak~L~kL 69 (312)
T 3abh_A 24 SFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEW 69 (312)
T ss_dssp CTTSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467777777665 334455555555555556665544443
No 377
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=36.11 E-value=2.8e+02 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+-+..+-.|..+-.-+.-|+-++.+++..+|--++.+
T Consensus 43 EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~ 79 (167)
T 4gkw_A 43 EEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKA 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445555566666666777777777776666666665
No 378
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=35.95 E-value=33 Score=34.30 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=11.4
Q ss_pred CCCCCCcccccceee
Q 001324 1083 SECPICRTKISDRLF 1097 (1100)
Q Consensus 1083 ~~CP~Cr~~i~~~i~ 1097 (1100)
..||+|..+-..+.+
T Consensus 154 ~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVV 168 (170)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCHHHcee
Confidence 479999988766554
No 379
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.92 E-value=1.3e+02 Score=24.71 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001324 819 EVTKLSLQNAKLEKEL 834 (1100)
Q Consensus 819 ~v~kL~~qn~~L~~EL 834 (1100)
++..|..+|..|..++
T Consensus 31 ~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 31 ECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 380
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=35.81 E-value=15 Score=42.63 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 151 HANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 151 ~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+..|..++..+. ..+..| .+.++..|..|||||+++.
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHHH
Confidence 446776665332 223333 3488999999999998763
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.78 E-value=12 Score=38.17 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=20.1
Q ss_pred HHHHHHhc-CCc--eeEEeeccCCCCCccccC
Q 001324 164 PVVKAAME-GVN--GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 164 ~lv~~~l~-G~n--~ti~aYGqtgSGKT~Tm~ 192 (1100)
+.++.++. |+. ..+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566665 332 356678999999998864
No 382
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.67 E-value=80 Score=36.02 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 001324 675 SMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLLE 733 (1100)
Q Consensus 675 ~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq 733 (1100)
++..+..++..|.++..+.+.+++.++..+++++++|... ....++|.++++.|+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE----ETVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcC
Confidence 3457777888888888888888888888888888887776 445666666665444
No 383
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.56 E-value=10 Score=47.99 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 384
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=35.34 E-value=13 Score=45.09 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
|..++. +..++..|++|||||+|+.
T Consensus 189 v~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 189 VKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 444443 3456789999999999964
No 385
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=35.29 E-value=1.2e+02 Score=23.96 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 689 QCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 689 ~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
++.+...++..+.+.|..|-+-|..|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~A 35 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEA 35 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666
No 386
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=35.16 E-value=20 Score=43.96 Aligned_cols=83 Identities=20% Similarity=0.337 Sum_probs=47.0
Q ss_pred eecceecCCCCChhHHHhhhhHHHHHHHhcCCceeEEeeccCCCCCccccCCCC---CCCCch----hHHHHHHHHHhhc
Q 001324 142 YAFDRVFGPHANSQEVYDVAARPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDQ---NSPGII----PLAIKDVFSIIQD 214 (1100)
Q Consensus 142 f~FD~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm~G~~---~~~Gii----pr~~~~lF~~i~~ 214 (1100)
|.|.. |.|..+|..-+.. ++..+-.|... ....|.|||||||||..-- ..|-|| ......|++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 44544 4888888877664 45555666533 3467999999999996310 111111 0223444444443
Q ss_pred C-CCceEEEEEeeeeee
Q 001324 215 T-PGREFLLRVSYLEIY 230 (1100)
Q Consensus 215 ~-~~~~~~v~vS~~EIy 230 (1100)
. ++..+....||+.-|
T Consensus 76 ~~~~~~V~~fps~yd~~ 92 (664)
T 1c4o_A 76 LFPENAVEYFISYYDYY 92 (664)
T ss_dssp HCTTSEEEECCCGGGTS
T ss_pred HCCCCeEEEcCchhhcc
Confidence 2 444566667764433
No 387
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.92 E-value=1.7e+02 Score=34.39 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001324 814 KNLAGEVTKLSLQNAKLEKELLAARESM 841 (1100)
Q Consensus 814 ~~l~e~v~kL~~qn~~L~~EL~~~~~~~ 841 (1100)
..|.++++.|..+...|++++...++.+
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 388
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.80 E-value=1.8e+02 Score=26.03 Aligned_cols=35 Identities=20% Similarity=0.056 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 001324 768 ETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYA 802 (1100)
Q Consensus 768 k~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~ 802 (1100)
.+++.+++.+.......+..|...|-.|+.|+...
T Consensus 50 E~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 50 EREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443333334444555555555555443
No 389
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=34.66 E-value=2.4e+02 Score=26.56 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001324 721 ENKKLQEKVNLLEQQLACQNG 741 (1100)
Q Consensus 721 ~~~el~~~~~~Lq~el~~l~~ 741 (1100)
.+.++...+..|+..+.++..
T Consensus 14 KvAElekkv~~lek~lk~~~e 34 (125)
T 2pms_C 14 KIAELENQVHRLEQELKEIDE 34 (125)
T ss_dssp HHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhcch
Confidence 456777777777777666553
No 390
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.59 E-value=10 Score=43.82 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred HhcCCceeEEeeccCCCCCcccc
Q 001324 169 AMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 169 ~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58899999999999999999764
No 391
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=34.55 E-value=4.1e+02 Score=27.53 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 787 GLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEK 832 (1100)
Q Consensus 787 ~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~ 832 (1100)
-|..+..+++.+..++.+..+....|.++-.+.+.|.+.+..+++.
T Consensus 102 lI~pLE~k~e~D~k~i~~~~K~y~~e~k~~~~~leK~~~elkK~~r 147 (222)
T 3ok8_A 102 LLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMER 147 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Confidence 3788889999999999999999999999999999999999888853
No 392
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.54 E-value=70 Score=32.22 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001324 801 YAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMH 842 (1100)
Q Consensus 801 ~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~ 842 (1100)
.+.-++..+..|+..|.+.+.....++..|.++|+..+..+.
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444555555555555555555555555555555554443
No 393
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=34.39 E-value=17 Score=37.01 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=18.7
Q ss_pred HHHHHHHhc--CCceeEEeeccCCCCCcccc
Q 001324 163 RPVVKAAME--GVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 163 ~~lv~~~l~--G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 334444432 33345667899999999876
No 394
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.30 E-value=2.4e+02 Score=32.17 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=4.9
Q ss_pred HhHHHHHHHHH
Q 001324 702 ADNRILQEQLQ 712 (1100)
Q Consensus 702 ad~~~LqeqL~ 712 (1100)
..+..|+.+|.
T Consensus 105 ~~i~~l~~~~~ 115 (409)
T 1m1j_C 105 NTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 395
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=34.16 E-value=15 Score=43.45 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
++..++.|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 344445553 5788999999999875
No 396
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=34.13 E-value=98 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 804 ELASAAAVELKNLAGEVTKLSLQNAKLE 831 (1100)
Q Consensus 804 ee~~~l~~E~~~l~e~v~kL~~qn~~L~ 831 (1100)
-+|.++..+++.-.+++.+|..+|.+|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666666666666666666666553
No 397
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=34.13 E-value=15 Score=42.98 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
|..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567876 566799999999874
No 398
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=34.04 E-value=10 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.3
Q ss_pred eEEeeccCCCCCccccC
Q 001324 176 TVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm~ 192 (1100)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999999874
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=33.74 E-value=19 Score=39.52 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.3
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||+++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999997
No 400
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.71 E-value=16 Score=37.30 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=20.9
Q ss_pred HHHHHHHhc-CCc--eeEEeeccCCCCCcccc
Q 001324 163 RPVVKAAME-GVN--GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 163 ~~lv~~~l~-G~n--~ti~aYGqtgSGKT~Tm 191 (1100)
-+-++.++. |+. ..+.-+|++|||||..+
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 355677774 432 45778899999999876
No 401
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=33.58 E-value=15 Score=42.53 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHhcCCceeEEeeccCCCCCcccc
Q 001324 167 KAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 167 ~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
..++.|.+ ++..|+||+|||++.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34556644 667899999999985
No 402
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=33.56 E-value=2.4e+02 Score=27.48 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhc
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRI---------LQEQLQNKLIHECSENKKLQEKVNLLEQQLACQN 740 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~---------LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~ 740 (1100)
+++.++..+..+|...+++..++.++... .++|++........+..++.+...+|..+++.+.
T Consensus 33 ~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 33 EISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777778888888888888776655543 2334444333344556666666666666665554
No 403
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=33.44 E-value=19 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=14.9
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
...|...|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356788899999999875
No 404
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=33.30 E-value=3.7e+02 Score=28.04 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHH
Q 001324 608 EQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQ---NLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVT 684 (1100)
Q Consensus 608 eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qie---eLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~ 684 (1100)
+.+..+...+..+-.++-++.++++...+..+..++ .-|..+...+...+ .+..+++
T Consensus 62 ddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~--------------------~l~~~I~ 121 (234)
T 3plt_A 62 DDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKE--------------------KITDEIA 121 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------------HHHHHHH
Q ss_pred HHH------HHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHH
Q 001324 685 RLM------SQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQE 727 (1100)
Q Consensus 685 ~L~------r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~ 727 (1100)
+|. .++...+.||.+.++++-.-+.||... .+..+++
T Consensus 122 kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~------kR~~lKE 164 (234)
T 3plt_A 122 HLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNI------TREKLKA 164 (234)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHh------HHHHHHH
No 405
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.29 E-value=40 Score=32.50 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001324 753 SDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEE 798 (1100)
Q Consensus 753 ~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e 798 (1100)
++.....++..+..+.++++++..+...|.+++.-.....+.+.++
T Consensus 78 sr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRD 123 (146)
T 2xnx_M 78 NRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRD 123 (146)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC----------
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444555555555555556655555555554444444444443
No 406
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.18 E-value=1.1e+02 Score=26.93 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001324 756 YVDELRKKVQSQETENEKLKLEHVQLSE 783 (1100)
Q Consensus 756 ~~~~l~~~~~~lk~elE~lk~e~~~l~e 783 (1100)
.+..+..++..++.+|+.+...+.+|.+
T Consensus 57 ~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677777766655543
No 407
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=32.93 E-value=18 Score=43.23 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.0
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+|..++.|-+.-+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 445666555556788899999999863
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=32.88 E-value=11 Score=41.33 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHhcCCceeEEeeccCCCCCcccc
Q 001324 168 AAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 168 ~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.++.|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 409
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=32.86 E-value=13 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
-.|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999875
No 410
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=32.81 E-value=12 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|+..|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999853
No 411
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=32.78 E-value=10 Score=39.85 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.6
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999986
No 412
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.68 E-value=43 Score=22.05 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 820 VTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 820 v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
+.+|.+.|++|..|++...-+++.+|
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 34566667777777766666665544
No 413
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.67 E-value=16 Score=45.80 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=34.8
Q ss_pred cceecceecCCCCChhHHHhhhhHHHHH-HHhcC----CceeEEeeccCCCCCcccc
Q 001324 140 TAYAFDRVFGPHANSQEVYDVAARPVVK-AAMEG----VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 140 ~~f~FD~Vf~~~~~q~~vy~~~~~~lv~-~~l~G----~n~ti~aYGqtgSGKT~Tm 191 (1100)
..+.||.|.+.+..-..+.+.+..|+.. .++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578898888776666676655554432 22222 2246899999999999765
No 414
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.65 E-value=1.4e+02 Score=25.67 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 001324 693 KAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 693 k~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+..+..-++.++.+|+.+|..+
T Consensus 50 R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 50 RRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555544
No 415
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.32 E-value=98 Score=22.47 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 001324 922 EYRKKVEESKRREEALENDLANMWVLVAK 950 (1100)
Q Consensus 922 el~~~leEl~~~~~~L~~el~~~~~lv~k 950 (1100)
.|.-+++|+..+..+|+.+.+|++.++..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 44567888888888888888777766643
No 416
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=32.29 E-value=6.2e+02 Score=28.94 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHH
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVT 684 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~ 684 (1100)
+|.+|-+.+..-|..|+..+.+++. .-......+..+.+-+.....+....+..+. +++. +|+.++.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~----s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~---e~S~------eLe~ri~ 121 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQN----KYKTSNRVIVETINILKPGLEGAQQLDENYG---HVST------ELRRRIV 121 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH------HHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHHHHHHhhhccchhHHH---HHHH------HHHHHHH
Confidence 4445555666666666666664443 3334445566666666666666654444333 2222 5666666
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 001324 685 RLMSQCNEKAFELEIKSADN 704 (1100)
Q Consensus 685 ~L~r~l~ek~~Ele~~~ad~ 704 (1100)
-|.+.+++.-.-|.++...+
T Consensus 122 yIK~kVd~qi~~IrvLq~~l 141 (491)
T 1m1j_A 122 TLKQRVATQVNRIKALQNSI 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665544444433333
No 417
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.15 E-value=17 Score=44.54 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.1
Q ss_pred HHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
+|..++.|.| ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3455667876 577899999999875
No 418
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=32.04 E-value=1.4e+02 Score=34.24 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKE 833 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~E 833 (1100)
-+.+..+..+-..++.++++++.+.+.++.+.-. +.+ +...++..+.+.+.++++.|..+...++++
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK----APP---------EEKEALIARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888889999999998777765332 111 233445555555555555555555555554
Q ss_pred HH
Q 001324 834 LL 835 (1100)
Q Consensus 834 L~ 835 (1100)
+.
T Consensus 94 ~~ 95 (421)
T 1ses_A 94 LE 95 (421)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 419
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.71 E-value=81 Score=22.45 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 001324 922 EYRKKVEESKRREEALENDLANMWVLV 948 (1100)
Q Consensus 922 el~~~leEl~~~~~~L~~el~~~~~lv 948 (1100)
.|.-+++|+..+..+|+.+.+|++.++
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345678888888888888887766655
No 420
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.64 E-value=16 Score=43.14 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.0
Q ss_pred ceeEEeeccCCCCCccccC
Q 001324 174 NGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm~ 192 (1100)
...|+-||++|+|||++..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578899999999999863
No 421
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=31.63 E-value=11 Score=42.69 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCccccC
Q 001324 175 GTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~ 192 (1100)
.-++..|+||||||++|.
T Consensus 36 ~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 345667999999999874
No 422
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.51 E-value=1.9e+02 Score=23.41 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELA 806 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~ 806 (1100)
+...+..+.+++.+++.+.......+..|...|-.|+.|++....+.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666777777777776666777788888888888877665443
No 423
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.38 E-value=82 Score=22.41 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 001324 922 EYRKKVEESKRREEALENDLANMWVLV 948 (1100)
Q Consensus 922 el~~~leEl~~~~~~L~~el~~~~~lv 948 (1100)
.|.-+++++-.+..+|+.+.+|++.++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344678888888888888887777665
No 424
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.16 E-value=67 Score=26.57 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001324 812 ELKNLAGEVTKLSLQNAKLEKELLAARESM 841 (1100)
Q Consensus 812 E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~ 841 (1100)
.+..|..++..|..+|..|..++..++..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777766665544
No 425
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=31.06 E-value=13 Score=40.17 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=16.0
Q ss_pred CceeEEeeccCCCCCcccc
Q 001324 173 VNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 173 ~n~ti~aYGqtgSGKT~Tm 191 (1100)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999875
No 426
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=31.04 E-value=1e+02 Score=24.15 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 001324 724 KLQEKVNLLEQQLACQ 739 (1100)
Q Consensus 724 el~~~~~~Lq~el~~l 739 (1100)
.|.+.++.|++.++.+
T Consensus 6 aleekvkaleekvkal 21 (67)
T 1lq7_A 6 ALEEKVKALEEKVKAL 21 (67)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444555555555443
No 427
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=30.99 E-value=75 Score=20.80 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001324 605 LLVEQVKMLAGEIAFSSSNLKRL 627 (1100)
Q Consensus 605 ~l~eq~k~l~~e~~~l~~el~~L 627 (1100)
.|++.+-.|.+|++.+..+.++|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 35566667888888888887765
No 428
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.79 E-value=2.1e+02 Score=22.92 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 816 LAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 816 l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
...++..+.....++.++|...++.+..|.
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444443
No 429
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.72 E-value=1.2e+02 Score=26.72 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 815 NLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 815 ~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
.+..++..|+.+|..|..++..++.+...+.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544443
No 430
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.66 E-value=71 Score=22.87 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 815 NLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 815 ~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
.|+++|..|...|..|+.|...+++-
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46677777777777777776665543
No 431
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=30.59 E-value=13 Score=37.48 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999876
No 432
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=30.48 E-value=13 Score=37.10 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999875
No 433
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=30.43 E-value=17 Score=41.29 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=17.8
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+..++.| .++..++||+|||.++.
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 4556677 45567899999998863
No 434
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.29 E-value=94 Score=22.12 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001324 815 NLAGEVTKLSLQNAKLEKELLAARES 840 (1100)
Q Consensus 815 ~l~e~v~kL~~qn~~L~~EL~~~~~~ 840 (1100)
.|+++|..|...|..|+.|.+..++-
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46677777777777777776666543
No 435
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=30.10 E-value=15 Score=44.46 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.5
Q ss_pred CCceeEEeeccCCCCCccccC
Q 001324 172 GVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 172 G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
-.++.++..|..|||||+|+.
T Consensus 20 ~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 20 APRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CCSSCEEEEECTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHH
Confidence 346678899999999999975
No 436
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.09 E-value=17 Score=37.54 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=18.9
Q ss_pred HHHHHhcC-C--ceeEEeeccCCCCCcccc
Q 001324 165 VVKAAMEG-V--NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 165 lv~~~l~G-~--n~ti~aYGqtgSGKT~Tm 191 (1100)
-++.++.| + ...+.-+|++|+|||..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 34556533 2 246778999999999885
No 437
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.09 E-value=7e+02 Score=28.86 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001324 760 LRKKVQSQETENEKLKLEH 778 (1100)
Q Consensus 760 l~~~~~~lk~elE~lk~e~ 778 (1100)
+++.+...+++..+.+++.
T Consensus 32 Ye~~~ae~~a~n~~i~aeN 50 (497)
T 3iox_A 32 YEAAVAANNAANAALTAEN 50 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHH
Confidence 3444444444444444443
No 438
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=29.94 E-value=12 Score=43.10 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=15.6
Q ss_pred ceeEEeeccCCCCCcccc
Q 001324 174 NGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 174 n~ti~aYGqtgSGKT~Tm 191 (1100)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566788999999999986
No 439
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=29.66 E-value=13 Score=37.27 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||+++
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 440
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.60 E-value=61 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=25.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001324 600 SDQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSV 632 (1100)
Q Consensus 600 ~~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~ 632 (1100)
...+++|..+++.|..++..|..++..|..++.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888999999999998888888877664
No 441
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.56 E-value=7.1e+02 Score=28.79 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001324 682 TVTRLMSQCNEKAFELEIKSADNRILQEQ 710 (1100)
Q Consensus 682 ~~~~L~r~l~ek~~Ele~~~ad~~~Lqeq 710 (1100)
.++++..+-.+...|.+.+.+.+...+..
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~ 63 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKAD 63 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444333333
No 442
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=29.53 E-value=26 Score=38.89 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|...|++|+|||+|+
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46777899999999987
No 443
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.40 E-value=1.7e+02 Score=23.69 Aligned_cols=27 Identities=30% Similarity=0.174 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 804 ELASAAAVELKNLAGEVTKLSLQNAKL 830 (1100)
Q Consensus 804 ee~~~l~~E~~~l~e~v~kL~~qn~~L 830 (1100)
+.+..+..+...|..++..|..++..|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444
No 444
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=29.30 E-value=20 Score=43.74 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=18.0
Q ss_pred HHHHhcCCceeEEeeccCCCCCcccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
|..++.|.| ++..++||||||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 345567876 567789999999863
No 445
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=29.26 E-value=1.4e+02 Score=22.25 Aligned_cols=33 Identities=30% Similarity=0.142 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 799 ASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 799 ~~~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~ 835 (1100)
...++.++.+++. -.++|..|+.+|..|+.++.
T Consensus 5 Ke~mq~LNdrlAs----yidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFAN----YIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555543 45678888888888877653
No 446
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.18 E-value=43 Score=35.44 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Q 001324 641 QIQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDM---QQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNKLIH 717 (1100)
Q Consensus 641 qieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el---~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~ 717 (1100)
++..|+.++.....++. +. ..+... ..+++++..+++.+.++|..|.+.|..+
T Consensus 25 ~~~~~~~e~~~l~~~~~--------------------~~~~~~~~~~~-~~~l~eL~~ql~~L~arNe~L~~~Lk~a--- 80 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLE--------------------NAVGSHAPTRS-ARDIHQLEARIDSLAARNSKLMETLKEA--- 80 (251)
T ss_dssp -----------------------------------------------C-CHHHHHHHHHHHHHTTTHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhh--------------------hcccCcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HhHHHHHHHHHHHHHHH
Q 001324 718 ECSENKKLQEKVNLLEQ 734 (1100)
Q Consensus 718 e~~~~~el~~~~~~Lq~ 734 (1100)
..+...|++++++|++
T Consensus 81 -r~El~~LkeElerL~s 96 (251)
T 3m9b_A 81 -RQQLLALREEVDRLGQ 96 (251)
T ss_dssp -HHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHhcC
No 447
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=28.82 E-value=20 Score=43.12 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=18.8
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
.|..++. +..++..|+.|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 3444444 3567779999999999874
No 448
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.64 E-value=23 Score=29.01 Aligned_cols=35 Identities=23% Similarity=0.669 Sum_probs=24.2
Q ss_pred ccccccccccceEE---eCCCCcccchhhh----hcCCCCCCC
Q 001324 1053 MCKVCFESPTAAIL---LPCRHFCLCKSCS----LACSECPIC 1088 (1100)
Q Consensus 1053 ~C~iC~~~~~~~vl---~pC~H~~~C~~C~----~~~~~CP~C 1088 (1100)
.|-.|.....+... --|++. ||.+|. ..+..||.|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 58888776644332 256666 999995 345789999
No 449
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.63 E-value=1.3e+02 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 814 KNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 814 ~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
..+..++..|..+|..|..++..++.++..+.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666665555555443
No 450
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.62 E-value=12 Score=33.51 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=24.9
Q ss_pred cccccccccccceEEeCCCCcccchhhhhcC---CCCCCCcccccc
Q 001324 1052 HMCKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISD 1094 (1100)
Q Consensus 1052 ~~C~iC~~~~~~~vl~pC~H~~~C~~C~~~~---~~CP~Cr~~i~~ 1094 (1100)
..|++|.. .+.+-=++. .|..|.... .-||-|.+++..
T Consensus 33 ~~CP~Cq~----eL~~~g~~~-hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQH----VLDQDNGHA-RCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCS----BEEEETTEE-EETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCC----cceecCCEE-ECccccchhhccccCcchhhHHHH
Confidence 58999943 333333333 699996554 449999988753
No 451
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=28.57 E-value=16 Score=42.30 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=18.5
Q ss_pred HHHHhcCCceeEEeeccCCCCCccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
+..++.|.+. +++.|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456778664 56779999999997
No 452
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=28.56 E-value=19 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=18.1
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
|..++. +..++..|+.|||||+|+.
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 444443 3346789999999999975
No 453
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=28.52 E-value=12 Score=39.23 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCCccccCC
Q 001324 175 GTVFAYGVTSSGKTHTMHG 193 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm~G 193 (1100)
..++-||..|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678899999999998753
No 454
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=28.51 E-value=13 Score=37.70 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||.+|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999987
No 455
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.49 E-value=98 Score=22.14 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 001324 922 EYRKKVEESKRREEALENDLANMWVLV 948 (1100)
Q Consensus 922 el~~~leEl~~~~~~L~~el~~~~~lv 948 (1100)
.|.-+++++-.+..+|+.+.+|++.++
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344677788888888888886666654
No 456
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=28.44 E-value=20 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=18.2
Q ss_pred HHHHhcCCceeEEeeccCCCCCccccC
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
|..++.+ ..++..|+.|||||+|+.
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 4444443 456789999999999975
No 457
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.36 E-value=1.5e+02 Score=27.17 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 642 IQNLEREIQEKRRQMRILEQRIIENGEASMANASMVDMQQTVTRLMSQCNEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 642 ieeLed~l~~~k~~i~~Le~ri~~sr~~~~~~~~~~el~~~~~~L~r~l~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
+++|+++|...+.++-+.-+++.+....-+..-+ +++ ..-+..+..+..-++.++++|+.+|..+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPD--evN------K~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPD--ELN------KRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444433333221111 111 1223444555666666777777777666
No 458
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=28.27 E-value=11 Score=38.16 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCccccC
Q 001324 176 TVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm~ 192 (1100)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999999875
No 459
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.27 E-value=23 Score=43.98 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|+-||++|+|||++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999875
No 460
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.11 E-value=14 Score=37.07 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.8
Q ss_pred EEeeccCCCCCcccc
Q 001324 177 VFAYGVTSSGKTHTM 191 (1100)
Q Consensus 177 i~aYGqtgSGKT~Tm 191 (1100)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999976
No 461
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.07 E-value=75 Score=25.51 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 001324 601 DQMDLLVEQVKMLAGEIAFSSSNLKRLVDQSVN 633 (1100)
Q Consensus 601 ~~~d~l~eq~k~l~~e~~~l~~el~~L~~q~~~ 633 (1100)
..+++|..++..|..++..|..++..|...+.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357788889999999999999999988877643
No 462
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.05 E-value=15 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|+..|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999865
No 463
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=27.97 E-value=27 Score=39.25 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||+|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5778899999999997
No 464
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.94 E-value=3.2e+02 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001324 645 LEREIQEKRRQMRILEQRII 664 (1100)
Q Consensus 645 Led~l~~~k~~i~~Le~ri~ 664 (1100)
|...+...+..+-.+-.++.
T Consensus 18 ~~~~~~ri~~aig~~d~ri~ 37 (114)
T 2xzr_A 18 IENEIARIKKLIGAIDGRVT 37 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhhhhHHHH
Confidence 34444444444443333333
No 465
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.90 E-value=23 Score=43.87 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHhcCCceeEEeeccCCCCCccccC
Q 001324 165 VVKAAMEGVNGTVFAYGVTSSGKTHTMH 192 (1100)
Q Consensus 165 lv~~~l~G~n~ti~aYGqtgSGKT~Tm~ 192 (1100)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4444444555667889999999999864
No 466
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=27.43 E-value=17 Score=35.99 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCccc
Q 001324 176 TVFAYGVTSSGKTHT 190 (1100)
Q Consensus 176 ti~aYGqtgSGKT~T 190 (1100)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999975
No 467
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.33 E-value=17 Score=39.87 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999997
No 468
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=27.21 E-value=17 Score=35.52 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCccc
Q 001324 176 TVFAYGVTSSGKTHT 190 (1100)
Q Consensus 176 ti~aYGqtgSGKT~T 190 (1100)
.|+..|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999984
No 469
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.17 E-value=2.9e+02 Score=24.06 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 814 KNLAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 814 ~~l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
++|-+.+..|..+++.|.+++...+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444333333
No 470
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.12 E-value=2.2e+02 Score=33.16 Aligned_cols=32 Identities=19% Similarity=-0.059 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001324 754 DEYVDELRKKVQSQETENEKLKLEHVQLSEEN 785 (1100)
Q Consensus 754 ~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~ 785 (1100)
-+.+..++.+-..++.++++++++.+.++.+.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888887776653
No 471
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.90 E-value=1.1e+02 Score=25.94 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001324 809 AAVELKNLAGEVTKLSLQN 827 (1100)
Q Consensus 809 l~~E~~~l~e~v~kL~~qn 827 (1100)
+..|...|...+..|..++
T Consensus 48 l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 48 TTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 472
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=26.87 E-value=25 Score=45.13 Aligned_cols=23 Identities=39% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHhcCCceeEEeeccCCCCCccc
Q 001324 166 VKAAMEGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 166 v~~~l~G~n~ti~aYGqtgSGKT~T 190 (1100)
|..++.|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 455677754 78899999999964
No 473
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.86 E-value=1.3e+02 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001324 678 DMQQTVTRLMSQCNEKAFELEIKSADNRILQ 708 (1100)
Q Consensus 678 el~~~~~~L~r~l~ek~~Ele~~~ad~~~Lq 708 (1100)
+.-+.-.+|-..+..|++|+..+..+|.+|+
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445566677777777777777776666654
No 474
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.85 E-value=1.4e+02 Score=21.68 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 816 LAGEVTKLSLQNAKLEKELLAARE 839 (1100)
Q Consensus 816 l~e~v~kL~~qn~~L~~EL~~~~~ 839 (1100)
|+++|..|...+..|+.|...++.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444443333
No 475
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.75 E-value=27 Score=43.32 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
+.|+-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999876
No 476
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=26.62 E-value=17 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|+..|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999854
No 477
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.59 E-value=4.9e+02 Score=26.75 Aligned_cols=9 Identities=33% Similarity=0.183 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 001324 724 KLQEKVNLL 732 (1100)
Q Consensus 724 el~~~~~~L 732 (1100)
+++.++..|
T Consensus 136 ~~~~~~~~L 144 (213)
T 1ik9_A 136 ENQAKNEHL 144 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 478
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.55 E-value=18 Score=35.49 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCcccc
Q 001324 175 GTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 175 ~ti~aYGqtgSGKT~Tm 191 (1100)
..|+..|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999864
No 479
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.47 E-value=3.1e+02 Score=27.33 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001324 819 EVTKLSLQNAKLEKELL 835 (1100)
Q Consensus 819 ~v~kL~~qn~~L~~EL~ 835 (1100)
++++|..+...|+.++.
T Consensus 114 kI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 114 KINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 480
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=26.38 E-value=2.7e+02 Score=27.78 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHh
Q 001324 683 VTRLMSQCNEKAFELE-IKSADNRILQEQLQNK 714 (1100)
Q Consensus 683 ~~~L~r~l~ek~~Ele-~~~ad~~~LqeqL~~a 714 (1100)
...|..+|.-..+++. ++...+++|+.+|.--
T Consensus 135 ~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py 167 (185)
T 3r2p_A 135 LHELQEKLSPLGEEMRDRARAHVDALRTHLAPY 167 (185)
T ss_dssp HTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444443 3344444455554443
No 481
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.10 E-value=1.1e+02 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhHHHHH
Q 001324 922 EYRKKVEESKRREEALENDLANMWVLV 948 (1100)
Q Consensus 922 el~~~leEl~~~~~~L~~el~~~~~lv 948 (1100)
.|.-+++++-.+..+|+.+.+|++.++
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445678888888888888887776665
No 482
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=25.91 E-value=2.9e+02 Score=23.02 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 001324 804 ELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRG 845 (1100)
Q Consensus 804 ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e 845 (1100)
+|..+|.+=...+..++.|-..-|..|+.++...+.++..++
T Consensus 17 ~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 17 NEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 444444444444444444444445555555444444444444
No 483
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.85 E-value=2.4e+02 Score=22.07 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 803 KELASAAAVELKNLAGEVTKLSLQN 827 (1100)
Q Consensus 803 ~ee~~~l~~E~~~l~e~v~kL~~qn 827 (1100)
+-+|.-+..|+++-..-+.||+.+.
T Consensus 16 k~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 16 KMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 3333333334444443344443333
No 484
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.81 E-value=3.2e+02 Score=24.61 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 001324 762 KKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAE 797 (1100)
Q Consensus 762 ~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~ 797 (1100)
++...++.+|.++..++.....+.++|.....=|..
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455666666666665555556666655554444
No 485
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=25.80 E-value=21 Score=37.01 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=9.3
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999886
No 486
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.78 E-value=7.7e+02 Score=27.93 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001324 686 LMSQCNEKAFELEIKSADNRILQEQLQNKLIHECSENKKLQEKVNLL 732 (1100)
Q Consensus 686 L~r~l~ek~~Ele~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~L 732 (1100)
+...+..++.-+....+.+++|+..+... ...+.+|...+..|
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~----~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSN----NQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44444444444555566677777776665 43444444444333
No 487
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=25.66 E-value=8e+02 Score=28.10 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 001324 894 DLKLELQARKQREAALEAALAEK---EFLEDEYRKKVEESKRREEALENDLANMWVLVAKLKKEVGS 957 (1100)
Q Consensus 894 ~~k~~~~a~~~r~~aLE~el~~k---~~~~~el~~~leEl~~~~~~L~~el~~~~~lv~kL~ke~~~ 957 (1100)
..-.++.+.+.-+...+..|..+ ..-.. .-.++.+-++.+.++.+++.....|..|.+....
T Consensus 203 QF~~Da~EaesWL~eke~~l~s~y~~D~g~d--~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~ 267 (450)
T 3r6n_A 203 QFFEEAQSTEAYLKGLQDSIRKKYPCDKNMP--LQHLLEQIKELEKEREKILEYKRQVQNLVNKSKK 267 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665566666555544 10000 0223445555666666777777777888776655
No 488
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.58 E-value=1.9e+02 Score=25.82 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 001324 691 NEKAFELEIKSADNRILQEQLQNK 714 (1100)
Q Consensus 691 ~ek~~Ele~~~ad~~~LqeqL~~a 714 (1100)
..+..+..-++.++.+|+.+|..+
T Consensus 48 ~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 48 QSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666
No 489
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=25.55 E-value=31 Score=42.32 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHhhhhHHHHHHH-hcCCceeEEeeccCCCCCcccc
Q 001324 156 EVYDVAARPVVKAA-MEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 156 ~vy~~~~~~lv~~~-l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
.||. ++......+ -.+.|-||+.-|.+|||||.+.
T Consensus 76 Hifa-iA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYA-LANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHH-HHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHH-HHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 4664 333333333 3799999999999999999985
No 490
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.55 E-value=1.1e+02 Score=20.92 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 814 KNLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 814 ~~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
..|+.++...+++|-+|+.|.+..
T Consensus 4 aqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666667777777776665433
No 491
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.36 E-value=90 Score=29.36 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHHHHH
Q 001324 606 LVEQVKMLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMR 657 (1100)
Q Consensus 606 l~eq~k~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~ 657 (1100)
|.+....++..+..+..+++.+..+..-..+.+..|++.++.+|.-.+.+..
T Consensus 28 Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~ 79 (130)
T 3cl3_D 28 LEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAAS 79 (130)
T ss_dssp -----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666655555544556666677777777766555554
No 492
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=25.30 E-value=35 Score=38.38 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHh----cCCceeEEeeccCCCCCccc
Q 001324 158 YDVAARPVVKAAM----EGVNGTVFAYGVTSSGKTHT 190 (1100)
Q Consensus 158 y~~~~~~lv~~~l----~G~n~ti~aYGqtgSGKT~T 190 (1100)
|+.++..++..+- .|.-..|+-+|+.|+|||+.
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl 40 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTI 40 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHH
No 493
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=25.25 E-value=21 Score=41.78 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCceeEEeeccCCCCCcccc
Q 001324 163 RPVVKAAMEGVNGTVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 163 ~~lv~~~l~G~n~ti~aYGqtgSGKT~Tm 191 (1100)
...|..++.| .-++..|+||||||.+.
T Consensus 119 ~~ai~~~~~~--~~~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 119 KDAVFEGLVN--RRRILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHHHHHH--SEEEEECCSTTTHHHHH
T ss_pred HHHHHHHHhc--CCcEEEeCCCCCHHHHH
No 494
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=25.22 E-value=6e+02 Score=26.45 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCCccchHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccccccch
Q 001324 599 TSDQMDLLVEQVK-MLAGEIAFSSSNLKRLVDQSVNDPDGSKVQIQNLEREIQEKRR-QMRILEQRIIENGEASMANASM 676 (1100)
Q Consensus 599 ~~~~~d~l~eq~k-~l~~e~~~l~~el~~L~~q~~~~~~~l~~qieeLed~l~~~k~-~i~~Le~ri~~sr~~~~~~~~~ 676 (1100)
+....+.+++++- ....--..+......|...+.+..++++.++.-.-+++...-. .+. +...
T Consensus 53 l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~e----------elr~----- 117 (243)
T 2a01_A 53 VTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEME----------LYRQ----- 117 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHH----------HHHT-----
T ss_pred HHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccCCC
Q 001324 677 VDMQQTVTRLMSQCNEKAFELE------------IKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGDKS 744 (1100)
Q Consensus 677 ~el~~~~~~L~r~l~ek~~Ele------------~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~~~ 744 (1100)
.|..-..+|..+++..-++|. ++...+.+++.+|.-- ..+++.++...-+++...-....
T Consensus 118 -~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~-------~ee~r~kl~~~~~el~~~l~p~~ 189 (243)
T 2a01_A 118 -KVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPY-------SDELRQRLAARLEALKENGGARL 189 (243)
T ss_dssp -THHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHhcchhH
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001324 745 AGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQKLAEEASYAKELASAAAVELKNLAGEVTK 822 (1100)
Q Consensus 745 ~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~kle~e~~~~~ee~~~l~~E~~~l~e~v~k 822 (1100)
+..... +...+..++..+.-+-.++...-. -.+..+..++..+-+++.+
T Consensus 190 ~e~~~k---------l~~~~e~lr~~l~p~~e~lk~~l~--------------------p~~e~~~~~l~~~~e~~~~ 238 (243)
T 2a01_A 190 AEYHAK---------ATEHLSTLSEKAKPALEDLRQGLL--------------------PVLESFKVSFLSALEEYTK 238 (243)
T ss_dssp TSSSCC---------HHHHHHHHHHHHHHHHHHSSSCSH--------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---------HHHHHHHHHHHhHHHHHHHHHHhH--------------------HHHHHHHHHHHHHHHHHHH
No 495
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=25.19 E-value=18 Score=36.30 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 496
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=24.97 E-value=18 Score=39.55 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=0.0
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|...|++|+|||+|+
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
No 497
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.96 E-value=3.1e+02 Score=23.68 Aligned_cols=63 Identities=17% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhhhhHHhhhhcccc
Q 001324 801 YAKELASAAAVELKNLAGEVTKLSLQNAKLEKELLAARESMHSRGAAMQTVNGVNRKYSDGMKAGRKGRLS 871 (1100)
Q Consensus 801 ~~~ee~~~l~~E~~~l~e~v~kL~~qn~~L~~EL~~~~~~~~~~e~q~q~v~~~~r~~l~~~~~~~~e~l~ 871 (1100)
|++.++++-+.-+...-++..+|..+..++.+|+...++....+. ..-...+.++.-+++..+
T Consensus 17 YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~--------el~~~~~~laevl~~l~~ 79 (79)
T 2zxx_A 17 YWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA--------EVAEHVQYMAEVIERLSN 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH--------HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhC
No 498
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.96 E-value=47 Score=36.19 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred eecCCCCChhHHHhhhhHHHHHHHhcCCce---------eEEeeccCCCCCcccc
Q 001324 146 RVFGPHANSQEVYDVAARPVVKAAMEGVNG---------TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 146 ~Vf~~~~~q~~vy~~~~~~lv~~~l~G~n~---------ti~aYGqtgSGKT~Tm 191 (1100)
.|+..-...+.+...+...+...+-.+... .|...|.+|+|||+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 61 KPPTYIERREWFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHH
T ss_pred cccccCChHHHHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHH
No 499
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=24.80 E-value=6.1e+02 Score=26.39 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCCCCccchhhHHHHHHHHHH-HHHHHHH-HHHH-HHHhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001324 591 SKHPIGGMTSDQMDLLVEQVKML-AGEIAFS-SSNL-KRLVDQSVNDPDGSKVQIQNLEREIQEKRRQMRILEQRIIENG 667 (1100)
Q Consensus 591 ~~~~~~~~~~~~~d~l~eq~k~l-~~e~~~l-~~el-~~L~~q~~~~~~~l~~qieeLed~l~~~k~~i~~Le~ri~~sr 667 (1100)
++++..-...+.+..-..+++.. .+-+..+ ..++ +.|..-+.+..+++......|+..+...-..+.
T Consensus 3 ~~~~~~e~v~~~~~~Y~~q~~~sa~~~~~~~~~s~l~~ql~~~~~d~~~~l~~~~~~l~~~l~p~~ee~~---------- 72 (243)
T 2a01_A 3 PPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFW---------- 72 (243)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSSSSHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHH----------
Q ss_pred cccccccchHHHHHHHH----HHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHhhccC
Q 001324 668 EASMANASMVDMQQTVT----RLMSQCNEKAFELE-IKSADNRILQEQLQNKLIHECSENKKLQEKVNLLEQQLACQNGD 742 (1100)
Q Consensus 668 ~~~~~~~~~~el~~~~~----~L~r~l~ek~~Ele-~~~ad~~~LqeqL~~a~~~e~~~~~el~~~~~~Lq~el~~l~~~ 742 (1100)
..+.....+++..+. ++..++.-+-.|+. +...++++++.+|.-- ..+++.++..-=++|..--.
T Consensus 73 --~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~-------~eel~~~~~~~~eel~~~L~- 142 (243)
T 2a01_A 73 --DNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPL-------RAELQEGARQKLHELQEKLS- 142 (243)
T ss_dssp --HHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHH-------HHHHHHHHHHHHHHHCCSCC-
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHH-
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 001324 743 KSAGSSGQGTSDEYVDELRKKVQSQETENEKLKLEHVQLSEENSGLHVQNQ-----------KLAEEASYAKELASAAAV 811 (1100)
Q Consensus 743 ~~~~~~~~~e~~~~~~~l~~~~~~lk~elE~lk~e~~~l~e~~~~L~~~~~-----------kle~e~~~~~ee~~~l~~ 811 (1100)
.-.++-...+...+..+++.+.-+-.++ -......+.+.+. ++..-...++.-+.-...
T Consensus 143 --------p~~eelr~kl~~~veelk~~l~P~~ee~--r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e 212 (243)
T 2a01_A 143 --------PLGEEMRDRARAHVDALRTHLAPYSDEL--RQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALE 212 (243)
T ss_dssp --------SSTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001324 812 ELK-NLAGEVTKLSLQNAKLEKELLAA 837 (1100)
Q Consensus 812 E~~-~l~e~v~kL~~qn~~L~~EL~~~ 837 (1100)
+++ .+.--+..+..+...+-+++.+.
T Consensus 213 ~lk~~l~p~~e~~~~~l~~~~e~~~~~ 239 (243)
T 2a01_A 213 DLRQGLLPVLESFKVSFLSALEEYTKK 239 (243)
T ss_dssp HSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh
No 500
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=24.72 E-value=19 Score=35.90 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=0.0
Q ss_pred eEEeeccCCCCCcccc
Q 001324 176 TVFAYGVTSSGKTHTM 191 (1100)
Q Consensus 176 ti~aYGqtgSGKT~Tm 191 (1100)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Done!