BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001325
         (1100 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A3LN86|PAN1_PICST Actin cytoskeleton-regulatory complex protein PAN1 OS=Scheffersomyces
            stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
            NRRL Y-11545) GN=PAN1 PE=3 SV=2
          Length = 1373

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 948  VAPPHLSSLPPQPAELPPLPPSPPPLPQSQPPL 980
            VAPP  + +PP P   PP+P   PP+P   PP+
Sbjct: 1248 VAPPIPTEVPPIPTGAPPIPTGAPPIPTEAPPI 1280


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,879,733
Number of Sequences: 539616
Number of extensions: 21359897
Number of successful extensions: 219172
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 1869
Number of HSP's that attempted gapping in prelim test: 108845
Number of HSP's gapped (non-prelim): 43426
length of query: 1100
length of database: 191,569,459
effective HSP length: 128
effective length of query: 972
effective length of database: 122,498,611
effective search space: 119068649892
effective search space used: 119068649892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)