Query 001325
Match_columns 1100
No_of_seqs 265 out of 269
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 21:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-17 2.6E-22 179.8 13.5 141 569-718 2-156 (352)
2 TIGR01659 sex-lethal sex-letha 99.7 3.5E-17 7.6E-22 181.4 13.3 143 567-718 104-260 (346)
3 TIGR01628 PABP-1234 polyadenyl 99.7 6.9E-17 1.5E-21 186.1 13.3 191 572-774 2-210 (562)
4 KOG0107 Alternative splicing f 99.7 2.7E-17 5.9E-22 167.3 6.8 68 570-637 10-82 (195)
5 TIGR01628 PABP-1234 polyadenyl 99.7 1.2E-15 2.5E-20 176.1 20.8 149 569-719 87-245 (562)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 6.7E-16 1.5E-20 176.5 14.6 148 569-718 1-159 (481)
7 TIGR01645 half-pint poly-U bin 99.6 9.3E-16 2E-20 180.3 14.0 151 569-719 106-272 (612)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.2E-15 9E-20 170.0 15.5 153 567-719 272-462 (481)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4.2E-15 9E-20 160.3 14.5 150 570-719 89-337 (352)
10 TIGR01622 SF-CC1 splicing fact 99.6 4.1E-15 8.9E-20 166.4 13.6 149 568-718 87-253 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.6 8.8E-15 1.9E-19 165.6 13.8 153 566-719 171-363 (509)
12 TIGR01648 hnRNP-R-Q heterogene 99.6 9.8E-15 2.1E-19 171.1 13.5 185 570-774 58-267 (578)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.6 3.2E-14 6.9E-19 161.1 14.6 153 567-719 292-490 (509)
14 TIGR01622 SF-CC1 splicing fact 99.6 3.5E-14 7.6E-19 159.0 14.4 152 568-719 184-436 (457)
15 KOG0117 Heterogeneous nuclear 99.5 1.1E-14 2.4E-19 163.5 10.1 137 568-717 81-232 (506)
16 KOG1924 RhoA GTPase effector D 99.5 1.6E-13 3.4E-18 161.1 12.5 67 1014-1086 616-684 (1102)
17 TIGR01648 hnRNP-R-Q heterogene 99.5 3.8E-13 8.2E-18 158.0 13.9 144 568-719 136-295 (578)
18 KOG0148 Apoptosis-promoting RN 99.4 4.8E-13 1E-17 143.7 11.1 145 569-719 61-226 (321)
19 KOG0105 Alternative splicing f 99.4 1.8E-12 3.9E-17 133.6 10.8 146 569-717 5-174 (241)
20 KOG0144 RNA-binding protein CU 99.3 3.1E-12 6.7E-17 143.7 8.5 140 570-717 34-189 (510)
21 PF00076 RRM_1: RNA recognitio 99.2 2.3E-11 5E-16 101.4 6.9 60 573-632 1-65 (70)
22 PLN03134 glycine-rich RNA-bind 99.2 4.7E-11 1E-15 118.2 9.6 71 568-638 32-112 (144)
23 KOG0145 RNA-binding protein EL 99.2 8.7E-11 1.9E-15 126.0 9.9 141 570-719 41-195 (360)
24 KOG0117 Heterogeneous nuclear 99.2 1.1E-10 2.4E-15 131.9 10.9 208 491-719 91-319 (506)
25 PF14259 RRM_6: RNA recognitio 99.0 9.1E-10 2E-14 93.7 6.9 60 573-632 1-65 (70)
26 KOG0124 Polypyrimidine tract-b 99.0 5.3E-10 1.1E-14 124.0 6.8 150 570-719 113-278 (544)
27 KOG0132 RNA polymerase II C-te 99.0 1.2E-07 2.6E-12 113.0 26.6 64 569-632 420-483 (894)
28 KOG0131 Splicing factor 3b, su 99.0 2.2E-09 4.8E-14 110.9 10.1 143 571-719 10-165 (203)
29 KOG0106 Alternative splicing f 98.9 1E-09 2.2E-14 116.1 6.7 143 571-719 2-159 (216)
30 smart00362 RRM_2 RNA recogniti 98.9 4.3E-09 9.3E-14 85.5 8.1 61 572-632 1-65 (72)
31 PLN03120 nucleic acid binding 98.9 3.4E-09 7.4E-14 114.7 8.4 68 570-638 4-78 (260)
32 KOG0123 Polyadenylate-binding 98.9 8.9E-09 1.9E-13 116.1 11.5 133 571-719 2-141 (369)
33 COG0724 RNA-binding proteins ( 98.9 2.5E-08 5.5E-13 97.9 13.0 116 570-685 115-255 (306)
34 TIGR01659 sex-lethal sex-letha 98.8 7.1E-09 1.5E-13 115.9 8.8 71 569-639 192-274 (346)
35 KOG0113 U1 small nuclear ribon 98.8 1.2E-08 2.5E-13 111.6 7.9 77 554-632 87-169 (335)
36 KOG0109 RNA-binding protein LA 98.8 9.1E-09 2E-13 112.2 6.7 130 572-716 4-135 (346)
37 KOG0122 Translation initiation 98.8 1.8E-08 4E-13 107.8 8.5 71 569-639 188-268 (270)
38 KOG1924 RhoA GTPase effector D 98.8 1.5E-08 3.3E-13 120.3 8.7 20 1011-1030 618-637 (1102)
39 TIGR01645 half-pint poly-U bin 98.8 1.7E-08 3.7E-13 119.9 8.8 64 569-632 203-272 (612)
40 KOG3671 Actin regulatory prote 98.7 2.6E-06 5.5E-11 98.5 25.0 112 582-717 21-139 (569)
41 smart00360 RRM RNA recognition 98.7 4.3E-08 9.4E-13 79.1 7.3 58 575-632 1-64 (71)
42 cd00590 RRM RRM (RNA recogniti 98.7 6E-08 1.3E-12 79.1 8.1 61 572-632 1-66 (74)
43 KOG0110 RNA-binding protein (R 98.7 5.2E-08 1.1E-12 115.3 10.8 149 564-715 510-677 (725)
44 PLN03213 repressor of silencin 98.7 2.7E-08 5.9E-13 113.8 7.9 62 570-631 10-75 (759)
45 PF13893 RRM_5: RNA recognitio 98.7 4.2E-08 9.1E-13 81.4 6.9 46 587-632 1-47 (56)
46 KOG0121 Nuclear cap-binding pr 98.7 2.9E-08 6.4E-13 98.3 6.5 75 563-637 29-113 (153)
47 KOG0111 Cyclophilin-type pepti 98.7 1.5E-08 3.3E-13 107.3 4.1 92 570-677 10-111 (298)
48 KOG4206 Spliceosomal protein s 98.6 2.4E-07 5.3E-12 98.3 12.7 155 565-720 4-210 (221)
49 KOG0114 Predicted RNA-binding 98.6 5.3E-08 1.1E-12 93.8 6.5 63 570-632 18-83 (124)
50 KOG0144 RNA-binding protein CU 98.6 2.6E-08 5.7E-13 112.8 4.8 72 568-639 122-205 (510)
51 KOG0148 Apoptosis-promoting RN 98.6 7.1E-08 1.5E-12 104.7 7.7 68 570-637 164-233 (321)
52 PLN03121 nucleic acid binding 98.6 9.2E-08 2E-12 102.8 8.4 68 570-638 5-77 (243)
53 KOG4207 Predicted splicing fac 98.6 5.6E-08 1.2E-12 102.4 5.2 69 571-639 14-92 (256)
54 KOG1457 RNA binding protein (c 98.5 2.9E-07 6.2E-12 98.0 9.3 152 568-719 32-274 (284)
55 KOG0123 Polyadenylate-binding 98.5 4E-07 8.6E-12 103.1 9.5 149 571-719 168-337 (369)
56 KOG0151 Predicted splicing reg 98.4 2.5E-07 5.4E-12 109.6 6.8 72 561-632 164-245 (877)
57 KOG0125 Ataxin 2-binding prote 98.4 3.1E-07 6.8E-12 101.7 6.5 69 570-638 96-170 (376)
58 KOG0145 RNA-binding protein EL 98.4 1.8E-06 3.9E-11 93.6 10.6 149 571-719 128-346 (360)
59 KOG0112 Large RNA-binding prot 98.3 2.6E-07 5.5E-12 111.7 2.7 141 565-719 367-517 (975)
60 KOG4660 Protein Mei2, essentia 98.2 9.2E-07 2E-11 103.0 4.0 68 568-635 73-143 (549)
61 KOG0127 Nucleolar protein fibr 98.2 5.9E-06 1.3E-10 96.3 10.1 149 571-719 6-184 (678)
62 KOG0146 RNA-binding protein ET 98.2 1.7E-06 3.7E-11 94.0 5.4 63 569-631 18-85 (371)
63 smart00361 RRM_1 RNA recogniti 98.2 3.9E-06 8.5E-11 73.3 6.5 49 584-632 2-63 (70)
64 KOG0153 Predicted RNA-binding 98.1 3.5E-06 7.7E-11 94.1 6.8 64 569-632 227-290 (377)
65 KOG0147 Transcriptional coacti 98.1 7.8E-06 1.7E-10 95.4 9.7 148 569-717 277-514 (549)
66 KOG4205 RNA-binding protein mu 98.1 4E-06 8.6E-11 93.4 5.3 132 569-710 5-156 (311)
67 KOG0149 Predicted RNA-binding 98.0 6.7E-06 1.5E-10 88.3 5.9 57 571-627 13-75 (247)
68 KOG0109 RNA-binding protein LA 98.0 6.4E-06 1.4E-10 90.6 5.6 63 568-632 76-138 (346)
69 KOG0108 mRNA cleavage and poly 98.0 1E-05 2.2E-10 93.6 7.3 62 571-632 19-86 (435)
70 KOG0130 RNA-binding protein RB 97.8 3E-05 6.6E-10 78.0 5.8 65 573-637 75-149 (170)
71 KOG1190 Polypyrimidine tract-b 97.8 0.00014 3E-09 83.1 11.3 147 570-719 297-478 (492)
72 PHA03247 large tegument protei 97.8 0.00039 8.4E-09 91.9 15.9 26 169-194 1762-1788(3151)
73 KOG0110 RNA-binding protein (R 97.7 8.2E-05 1.8E-09 89.1 8.4 148 571-719 386-586 (725)
74 KOG0120 Splicing factor U2AF, 97.7 7.3E-05 1.6E-09 87.7 7.8 76 557-632 276-357 (500)
75 KOG0147 Transcriptional coacti 97.7 3.3E-05 7.2E-10 90.3 4.8 142 570-717 179-344 (549)
76 KOG0126 Predicted RNA-binding 97.6 9.2E-06 2E-10 84.8 -1.2 66 567-632 32-103 (219)
77 KOG1190 Polypyrimidine tract-b 97.5 0.00043 9.4E-09 79.2 9.7 147 572-719 152-361 (492)
78 KOG0132 RNA polymerase II C-te 97.5 0.0062 1.3E-07 74.3 19.6 62 654-717 420-481 (894)
79 KOG0127 Nucleolar protein fibr 97.4 0.001 2.2E-08 78.3 12.4 145 569-713 116-354 (678)
80 KOG4208 Nucleolar RNA-binding 97.4 0.00022 4.8E-09 75.8 6.4 71 570-640 49-130 (214)
81 KOG1457 RNA binding protein (c 97.4 0.0001 2.2E-09 79.1 3.5 65 567-631 207-273 (284)
82 KOG1456 Heterogeneous nuclear 97.4 0.00039 8.5E-09 78.9 7.4 139 568-717 29-183 (494)
83 PF00076 RRM_1: RNA recognitio 97.3 0.00022 4.7E-09 59.6 3.6 62 658-719 1-65 (70)
84 PHA03247 large tegument protei 97.3 0.0022 4.8E-08 85.3 14.1 29 232-260 1994-2022(3151)
85 KOG0415 Predicted peptidyl pro 97.3 0.00031 6.7E-09 79.3 5.5 86 554-639 223-318 (479)
86 KOG0131 Splicing factor 3b, su 97.2 0.00041 8.8E-09 72.8 5.4 68 570-637 96-174 (203)
87 KOG0116 RasGAP SH3 binding pro 97.1 0.00052 1.1E-08 79.5 4.8 56 571-626 289-350 (419)
88 KOG4209 Splicing factor RNPS1, 96.9 0.00074 1.6E-08 72.8 4.3 62 570-632 101-168 (231)
89 PF14259 RRM_6: RNA recognitio 96.9 0.00095 2.1E-08 56.9 4.1 59 658-716 1-62 (70)
90 PLN03134 glycine-rich RNA-bind 96.9 0.0012 2.7E-08 66.0 5.4 73 647-719 26-102 (144)
91 KOG0226 RNA-binding proteins [ 96.9 0.0011 2.5E-08 72.4 5.0 63 570-632 190-258 (290)
92 KOG3671 Actin regulatory prote 96.8 0.016 3.6E-07 68.1 13.8 46 584-629 92-138 (569)
93 KOG4212 RNA-binding protein hn 96.8 0.0073 1.6E-07 70.0 10.8 155 558-717 37-280 (608)
94 KOG0112 Large RNA-binding prot 96.8 0.0011 2.4E-08 81.4 4.3 73 566-638 451-529 (975)
95 KOG0107 Alternative splicing f 96.7 0.0014 3.1E-08 68.5 4.1 63 655-718 10-72 (195)
96 KOG1923 Rac1 GTPase effector F 96.5 0.0068 1.5E-07 74.0 8.7 15 1056-1070 398-412 (830)
97 KOG0129 Predicted RNA-binding 96.5 0.074 1.6E-06 63.1 16.7 154 554-709 243-429 (520)
98 KOG1548 Transcription elongati 96.5 0.017 3.8E-07 65.5 11.2 148 570-717 134-338 (382)
99 KOG0146 RNA-binding protein ET 96.5 0.0027 5.9E-08 69.9 4.5 69 568-636 283-359 (371)
100 KOG0533 RRM motif-containing p 96.5 0.0044 9.4E-08 67.7 5.9 59 571-629 84-147 (243)
101 KOG0120 Splicing factor U2AF, 96.4 0.0048 1E-07 73.0 6.3 157 566-723 171-361 (500)
102 KOG2193 IGF-II mRNA-binding pr 96.4 0.002 4.4E-08 74.1 3.0 138 571-719 2-145 (584)
103 KOG4454 RNA binding protein (R 96.4 0.0017 3.6E-08 70.0 2.0 65 568-632 7-75 (267)
104 KOG0124 Polypyrimidine tract-b 96.2 0.0069 1.5E-07 69.0 5.9 64 568-631 208-277 (544)
105 smart00362 RRM_2 RNA recogniti 96.2 0.008 1.7E-07 48.8 4.7 61 657-717 1-63 (72)
106 PF04059 RRM_2: RNA recognitio 96.1 0.019 4.1E-07 55.1 7.3 69 572-640 3-87 (97)
107 KOG4206 Spliceosomal protein s 96.1 0.013 2.8E-07 63.3 6.7 72 566-637 142-219 (221)
108 KOG4211 Splicing factor hnRNP- 96.0 0.075 1.6E-06 62.8 12.8 136 572-715 12-167 (510)
109 KOG1456 Heterogeneous nuclear 95.9 0.1 2.2E-06 60.2 13.0 150 569-719 286-473 (494)
110 KOG0121 Nuclear cap-binding pr 95.8 0.0082 1.8E-07 60.6 3.7 67 653-719 34-104 (153)
111 cd00590 RRM RRM (RNA recogniti 95.7 0.018 3.9E-07 46.9 4.7 61 657-717 1-64 (74)
112 KOG1830 Wiskott Aldrich syndro 95.5 0.56 1.2E-05 55.0 17.0 12 830-841 234-245 (518)
113 smart00360 RRM RNA recognition 95.4 0.018 4E-07 46.4 3.8 59 660-718 1-63 (71)
114 KOG4205 RNA-binding protein mu 95.4 0.01 2.3E-07 66.8 3.2 59 569-628 96-160 (311)
115 KOG1923 Rac1 GTPase effector F 95.1 0.064 1.4E-06 66.0 8.6 12 778-789 190-201 (830)
116 PLN03120 nucleic acid binding 95.0 0.029 6.2E-07 62.0 4.9 64 655-719 4-68 (260)
117 KOG4672 Uncharacterized conser 94.9 0.13 2.9E-06 59.7 9.8 26 918-943 306-331 (487)
118 COG0724 RNA-binding proteins ( 94.9 0.036 7.8E-07 55.0 4.8 65 655-719 115-183 (306)
119 KOG4849 mRNA cleavage factor I 94.8 0.69 1.5E-05 53.2 15.0 63 655-717 80-148 (498)
120 KOG0128 RNA-binding protein SA 94.7 0.005 1.1E-07 75.7 -2.0 136 558-715 655-799 (881)
121 KOG4661 Hsp27-ERE-TATA-binding 94.2 0.062 1.4E-06 64.1 5.5 65 567-631 402-472 (940)
122 KOG4212 RNA-binding protein hn 94.1 0.066 1.4E-06 62.5 5.3 70 563-632 529-599 (608)
123 KOG0106 Alternative splicing f 93.9 0.037 8E-07 59.8 2.7 60 571-632 100-159 (216)
124 PF14605 Nup35_RRM_2: Nup53/35 93.9 0.1 2.2E-06 44.8 4.8 49 574-623 5-53 (53)
125 KOG1855 Predicted RNA-binding 93.8 0.043 9.3E-07 63.9 3.2 65 569-633 230-313 (484)
126 PF08777 RRM_3: RNA binding mo 93.7 0.12 2.6E-06 49.9 5.5 57 572-628 3-59 (105)
127 PF05918 API5: Apoptosis inhib 93.6 0.27 5.9E-06 59.5 9.4 140 55-261 2-141 (556)
128 KOG2416 Acinus (induces apopto 93.5 0.052 1.1E-06 65.2 3.2 70 568-638 442-520 (718)
129 KOG0114 Predicted RNA-binding 93.5 0.085 1.9E-06 52.0 4.1 64 654-717 17-81 (124)
130 KOG2314 Translation initiation 93.2 0.089 1.9E-06 63.0 4.4 52 581-632 75-131 (698)
131 KOG1548 Transcription elongati 93.0 0.15 3.2E-06 58.3 5.7 47 584-630 290-338 (382)
132 KOG0108 mRNA cleavage and poly 93.0 0.11 2.4E-06 61.1 4.9 64 656-719 19-86 (435)
133 PF15023 DUF4523: Protein of u 92.9 0.16 3.4E-06 52.5 5.1 55 577-632 97-151 (166)
134 KOG4574 RNA-binding protein (c 92.6 0.081 1.7E-06 65.6 3.0 76 564-639 292-373 (1007)
135 KOG4672 Uncharacterized conser 92.2 0.68 1.5E-05 54.2 9.5 18 918-935 301-318 (487)
136 KOG1830 Wiskott Aldrich syndro 92.1 3.3 7.1E-05 49.0 14.7 6 877-882 299-304 (518)
137 KOG1365 RNA-binding protein Fu 91.9 0.82 1.8E-05 53.2 9.7 148 575-723 166-353 (508)
138 PF13893 RRM_5: RNA recognitio 91.3 0.2 4.4E-06 41.7 3.2 45 672-718 1-46 (56)
139 PLN03121 nucleic acid binding 91.0 0.27 5.8E-06 54.2 4.5 64 655-719 5-69 (243)
140 PF07744 SPOC: SPOC domain; I 91.0 0.022 4.7E-07 53.9 -3.3 86 1013-1099 1-93 (119)
141 KOG0105 Alternative splicing f 89.6 0.46 1E-05 50.9 4.8 62 654-715 5-67 (241)
142 KOG1925 Rac1 GTPase effector F 89.1 0.81 1.7E-05 54.7 6.6 24 1046-1071 307-330 (817)
143 smart00361 RRM_1 RNA recogniti 89.1 0.38 8.3E-06 42.2 3.2 49 670-718 3-62 (70)
144 KOG1996 mRNA splicing factor [ 88.7 0.67 1.5E-05 52.4 5.4 51 582-632 298-355 (378)
145 KOG3152 TBP-binding protein, a 88.4 0.29 6.2E-06 54.3 2.3 64 569-632 73-154 (278)
146 PF15449 Retinal: Retinal prot 88.3 8 0.00017 50.2 14.7 17 1014-1030 1132-1148(1287)
147 KOG0130 RNA-binding protein RB 87.2 0.74 1.6E-05 47.5 4.2 63 654-716 71-137 (170)
148 PF04847 Calcipressin: Calcipr 86.7 1.4 3.1E-05 46.7 6.2 58 582-639 7-70 (184)
149 KOG4210 Nuclear localization s 86.3 1.1 2.4E-05 50.2 5.5 145 568-712 86-246 (285)
150 KOG1922 Rho GTPase effector BN 86.2 2.9 6.2E-05 52.6 9.5 25 1045-1069 410-437 (833)
151 KOG4210 Nuclear localization s 85.9 0.43 9.3E-06 53.4 2.0 71 568-639 183-263 (285)
152 PLN03213 repressor of silencin 84.9 1.1 2.5E-05 53.4 4.8 64 654-717 9-74 (759)
153 KOG2202 U2 snRNP splicing fact 83.5 0.54 1.2E-05 52.2 1.4 46 585-630 83-134 (260)
154 KOG4660 Protein Mei2, essentia 83.4 1.1 2.4E-05 54.0 4.0 67 652-719 72-138 (549)
155 PRK15313 autotransport protein 81.9 3 6.5E-05 53.4 7.0 9 569-577 182-190 (955)
156 KOG0391 SNF2 family DNA-depend 80.5 10 0.00022 50.0 10.8 17 102-118 1188-1204(1958)
157 KOG1984 Vesicle coat complex C 80.4 74 0.0016 41.3 17.8 8 926-933 137-144 (1007)
158 PF07174 FAP: Fibronectin-atta 79.9 7.7 0.00017 43.9 8.6 9 1073-1081 180-188 (297)
159 PRK09752 adhesin; Provisional 79.5 1.8 3.9E-05 56.3 4.1 11 122-132 50-60 (1250)
160 PRK09752 adhesin; Provisional 79.3 1.7 3.8E-05 56.5 3.9 6 656-661 702-707 (1250)
161 KOG4676 Splicing factor, argin 78.9 2.2 4.7E-05 50.0 4.2 66 572-637 9-83 (479)
162 KOG4307 RNA binding protein RB 78.3 5.2 0.00011 49.8 7.2 69 571-639 868-943 (944)
163 KOG0151 Predicted splicing reg 77.6 2.2 4.7E-05 53.0 3.9 64 654-717 173-243 (877)
164 COG5178 PRP8 U5 snRNP spliceos 77.3 1.9 4.1E-05 55.7 3.3 22 1064-1085 122-146 (2365)
165 PF05172 Nup35_RRM: Nup53/35/4 77.3 4.8 0.0001 39.2 5.4 47 578-625 14-73 (100)
166 PHA03378 EBNA-3B; Provisional 77.2 39 0.00085 42.6 13.9 17 698-714 509-525 (991)
167 KOG0111 Cyclophilin-type pepti 75.3 1.8 3.8E-05 47.7 2.1 60 654-716 9-75 (298)
168 KOG1922 Rho GTPase effector BN 75.0 11 0.00023 47.7 9.1 12 1062-1073 503-514 (833)
169 KOG0113 U1 small nuclear ribon 74.0 4 8.6E-05 46.6 4.5 66 653-718 99-168 (335)
170 PF03467 Smg4_UPF3: Smg-4/UPF3 73.9 3.9 8.5E-05 42.9 4.1 61 570-630 7-79 (176)
171 KOG0566 Inositol-1,4,5-triphos 73.5 18 0.0004 46.7 10.3 48 189-236 94-157 (1080)
172 KOG0125 Ataxin 2-binding prote 73.5 3.9 8.4E-05 47.2 4.3 65 655-719 96-162 (376)
173 KOG0115 RNA-binding protein p5 73.4 3.3 7.1E-05 46.4 3.6 60 567-626 28-92 (275)
174 PF11608 Limkain-b1: Limkain b 73.1 8.4 0.00018 37.2 5.7 57 572-632 4-65 (90)
175 KOG0307 Vesicle coat complex C 72.6 77 0.0017 41.8 15.4 12 655-666 495-506 (1049)
176 KOG0122 Translation initiation 72.0 6.4 0.00014 44.0 5.4 64 654-717 188-255 (270)
177 KOG4307 RNA binding protein RB 71.1 47 0.001 42.1 12.6 36 683-719 31-66 (944)
178 KOG0119 Splicing factor 1/bran 70.7 71 0.0015 39.2 13.6 20 696-715 207-229 (554)
179 KOG4208 Nucleolar RNA-binding 70.0 5.8 0.00013 43.3 4.4 64 654-719 48-118 (214)
180 PF05518 Totivirus_coat: Totiv 69.5 48 0.001 42.2 12.5 12 212-223 81-92 (759)
181 KOG0115 RNA-binding protein p5 67.2 13 0.00028 42.0 6.4 82 618-715 6-94 (275)
182 PRK14950 DNA polymerase III su 66.5 14 0.00031 45.1 7.3 19 87-105 42-62 (585)
183 KOG0566 Inositol-1,4,5-triphos 66.0 51 0.0011 43.0 11.8 47 192-238 89-136 (1080)
184 KOG2591 c-Mpl binding protein, 64.0 14 0.00031 45.3 6.4 78 557-635 162-249 (684)
185 KOG1985 Vesicle coat complex C 63.6 64 0.0014 41.6 12.0 12 1013-1024 183-194 (887)
186 PRK14950 DNA polymerase III su 62.7 35 0.00075 41.9 9.6 10 1009-1018 467-476 (585)
187 PF03276 Gag_spuma: Spumavirus 62.5 29 0.00063 42.6 8.6 8 767-774 41-48 (582)
188 KOG0116 RasGAP SH3 binding pro 60.7 8.4 0.00018 45.8 3.8 58 655-712 288-349 (419)
189 KOG2236 Uncharacterized conser 60.3 24 0.00052 42.6 7.3 26 696-722 317-342 (483)
190 KOG0119 Splicing factor 1/bran 58.8 3.3E+02 0.0072 33.8 16.1 12 866-877 401-412 (554)
191 COG5175 MOT2 Transcriptional r 58.0 13 0.00029 43.2 4.7 62 570-631 114-190 (480)
192 PF04059 RRM_2: RNA recognitio 58.0 21 0.00046 34.7 5.4 66 657-723 3-75 (97)
193 KOG0226 RNA-binding proteins [ 57.5 15 0.00032 41.6 4.7 151 568-719 94-258 (290)
194 PF05308 Mito_fiss_reg: Mitoch 56.9 25 0.00053 39.5 6.4 11 1047-1057 235-245 (253)
195 KOG1925 Rac1 GTPase effector F 55.8 15 0.00033 44.6 4.8 29 1006-1034 282-315 (817)
196 KOG1984 Vesicle coat complex C 55.5 5.1E+02 0.011 34.3 17.6 8 1050-1057 298-305 (1007)
197 PF05308 Mito_fiss_reg: Mitoch 55.4 19 0.0004 40.4 5.2 6 819-824 58-63 (253)
198 KOG1985 Vesicle coat complex C 55.3 1.4E+02 0.0029 38.8 12.8 6 907-912 84-89 (887)
199 KOG0307 Vesicle coat complex C 54.2 2.5E+02 0.0054 37.5 15.0 10 695-704 666-675 (1049)
200 KOG0129 Predicted RNA-binding 53.1 25 0.00054 42.8 6.0 121 555-702 352-485 (520)
201 PF05518 Totivirus_coat: Totiv 50.1 56 0.0012 41.7 8.5 13 542-554 280-292 (759)
202 KOG4454 RNA binding protein (R 49.5 8.4 0.00018 42.7 1.3 65 652-719 6-75 (267)
203 PLN00131 hypothetical protein; 48.2 34 0.00074 36.3 5.4 55 5-60 89-147 (218)
204 KOG2213 Apoptosis inhibitor 5/ 48.1 22 0.00049 42.3 4.5 90 53-161 2-91 (460)
205 KOG2675 Adenylate cyclase-asso 46.6 17 0.00037 43.5 3.3 23 654-676 37-60 (480)
206 KOG2546 Abl interactor ABI-1, 46.1 3.2E+02 0.0069 33.4 13.2 12 870-881 282-293 (483)
207 PF08675 RNA_bind: RNA binding 44.6 82 0.0018 30.7 6.8 56 578-635 16-71 (87)
208 PF14605 Nup35_RRM_2: Nup53/35 43.1 24 0.00052 30.5 2.9 52 656-710 2-53 (53)
209 PHA03378 EBNA-3B; Provisional 43.1 1.7E+02 0.0036 37.5 10.7 15 872-886 638-652 (991)
210 KOG0153 Predicted RNA-binding 41.4 34 0.00073 40.2 4.5 59 652-713 225-284 (377)
211 PF08777 RRM_3: RNA binding mo 40.9 36 0.00078 33.2 4.1 58 656-716 2-60 (105)
212 KOG2236 Uncharacterized conser 39.4 74 0.0016 38.7 6.9 22 701-722 325-346 (483)
213 KOG2068 MOT2 transcription fac 38.7 21 0.00046 41.4 2.4 60 571-630 78-149 (327)
214 PF06003 SMN: Survival motor n 38.4 10 0.00023 42.3 0.0 15 666-680 8-22 (264)
215 KOG0149 Predicted RNA-binding 38.2 34 0.00074 38.3 3.8 63 652-714 9-75 (247)
216 PRK14954 DNA polymerase III su 37.2 1.1E+02 0.0024 38.3 8.4 15 1007-1021 460-474 (620)
217 PF04625 DEC-1_N: DEC-1 protei 37.0 69 0.0015 37.4 6.0 12 765-776 5-16 (407)
218 KOG4462 WASP-interacting prote 36.8 5.6E+02 0.012 30.8 13.1 10 669-678 31-40 (437)
219 KOG1995 Conserved Zn-finger pr 36.6 37 0.00079 39.8 3.9 63 570-632 66-142 (351)
220 PRK14948 DNA polymerase III su 36.1 1E+02 0.0022 38.5 7.8 19 86-104 41-61 (620)
221 KOG2891 Surface glycoprotein [ 35.7 10 0.00022 43.1 -0.6 50 582-631 173-247 (445)
222 KOG0686 COP9 signalosome, subu 35.5 17 0.00037 43.4 1.1 109 37-161 111-243 (466)
223 KOG0415 Predicted peptidyl pro 34.1 58 0.0013 38.5 4.9 66 652-717 236-305 (479)
224 PF14650 FAM75: FAM75 family 33.5 89 0.0019 37.0 6.4 24 1027-1050 128-151 (373)
225 KOG2202 U2 snRNP splicing fact 33.4 26 0.00057 39.5 2.1 50 670-719 83-136 (260)
226 KOG4410 5-formyltetrahydrofola 32.6 68 0.0015 37.1 5.0 51 559-616 326-377 (396)
227 PF11608 Limkain-b1: Limkain b 32.4 61 0.0013 31.6 4.0 58 656-716 3-62 (90)
228 KOG4676 Splicing factor, argin 31.9 13 0.00028 44.1 -0.6 70 557-626 138-209 (479)
229 PRK07764 DNA polymerase III su 31.9 1.1E+02 0.0025 39.5 7.5 18 86-103 40-59 (824)
230 PLN02805 D-lactate dehydrogena 30.0 1E+02 0.0022 38.1 6.4 77 563-639 257-346 (555)
231 KOG0162 Myosin class I heavy c 29.7 3.4E+02 0.0073 35.3 10.5 49 570-622 579-634 (1106)
232 PF10567 Nab6_mRNP_bdg: RNA-re 27.0 70 0.0015 37.0 4.0 146 569-716 14-214 (309)
233 KOG0162 Myosin class I heavy c 26.4 3.2E+02 0.007 35.5 9.6 22 86-108 127-148 (1106)
234 KOG4209 Splicing factor RNPS1, 26.0 58 0.0013 36.0 3.1 64 653-717 99-166 (231)
235 PF15449 Retinal: Retinal prot 25.9 2.9E+02 0.0063 37.1 9.3 12 181-192 222-233 (1287)
236 PRK14948 DNA polymerase III su 25.8 1.5E+02 0.0032 37.2 6.8 16 702-717 324-339 (620)
237 KOG4849 mRNA cleavage factor I 25.2 3.5E+02 0.0076 32.4 9.0 58 573-630 83-148 (498)
238 KOG0682 Ammonia permease [Inor 24.7 37 0.00081 41.4 1.4 56 147-216 291-346 (500)
239 KOG0391 SNF2 family DNA-depend 24.6 3.9E+02 0.0084 36.7 10.0 78 199-276 1085-1182(1958)
240 PF08952 DUF1866: Domain of un 24.4 1.8E+02 0.0038 30.7 6.0 46 584-632 50-95 (146)
241 KOG4207 Predicted splicing fac 24.0 75 0.0016 35.4 3.4 63 655-717 13-79 (256)
242 PRK12270 kgd alpha-ketoglutara 23.9 2.2E+02 0.0048 38.1 7.8 7 1092-1098 172-178 (1228)
243 TIGR03042 PS_II_psbQ_bact phot 23.3 2.6E+02 0.0057 29.4 6.9 55 37-91 27-89 (142)
244 KOG1996 mRNA splicing factor [ 23.3 71 0.0015 37.0 3.2 51 669-719 300-355 (378)
245 KOG1785 Tyrosine kinase negati 22.8 1.9E+02 0.0042 34.9 6.6 68 569-640 221-292 (563)
246 KOG4217 Nuclear receptors of t 22.3 8.3E+02 0.018 30.5 11.5 31 883-913 154-185 (605)
247 PF01213 CAP_N: Adenylate cycl 21.9 30 0.00065 39.8 0.0 10 817-826 204-213 (312)
248 PF06003 SMN: Survival motor n 21.4 31 0.00068 38.6 0.0 8 1007-1014 229-236 (264)
249 KOG0260 RNA polymerase II, lar 21.0 1.9E+03 0.042 30.6 15.0 47 234-280 522-573 (1605)
250 PF15324 TALPID3: Hedgehog sig 20.8 1.4E+03 0.031 31.1 13.8 12 605-616 684-695 (1252)
251 KOG0128 RNA-binding protein SA 20.1 55 0.0012 42.1 1.7 60 570-629 736-800 (881)
252 PF10309 DUF2414: Protein of u 20.1 3.6E+02 0.0078 24.7 6.3 52 572-626 7-62 (62)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.2e-17 Score=179.75 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=119.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
+..+||||||+.+++|+||+++|++||+|.+|++.+ .||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467999999999999999999999999999999854 5699999999999999999999999876 788876
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 639 ~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+... ....+.||||+++..++.++|...|..++....+.+. + ...++..+|+|++.+||..|++.|+
T Consensus 82 ~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 82 PSSD---------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred cccc---------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 6211 1245789999999999999999999987765555442 2 3457789999999999999999999
Q ss_pred hhcc
Q 001325 715 QHRK 718 (1100)
Q Consensus 715 ~~r~ 718 (1100)
+...
T Consensus 153 g~~~ 156 (352)
T TIGR01661 153 GTTP 156 (352)
T ss_pred CCcc
Confidence 8763
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3.5e-17 Score=181.42 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=119.7
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
-...++||||||+.++||+||+++|+.||+|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999853 5699999999999999999999998775 6676
Q ss_pred eeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHH
Q 001325 637 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 637 ~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
+++.-. ......|||++++..+++|+|...|.+++.+..+.+. + ...++..+|||++.++|.+|++.
T Consensus 184 a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 184 ARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred cccccc---------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 655211 1236689999999999999999999988766655442 2 23457899999999999999999
Q ss_pred hhhhcc
Q 001325 713 LRQHRK 718 (1100)
Q Consensus 713 l~~~r~ 718 (1100)
|+++..
T Consensus 255 lng~~~ 260 (346)
T TIGR01659 255 LNNVIP 260 (346)
T ss_pred hCCCcc
Confidence 998753
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=6.9e-17 Score=186.14 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=137.3
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~ 641 (1100)
.||||||+.++||++|+++|.+||+|.+|++.+ .+|||||+|.+.+||.+|++.|+++.+. ||.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999953 5689999999999999999999998765 565553322
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..+ -....+|||++++..++.++|...|.++|.+..+.+. + ...++..+|+|++.++|..|++.+++...
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 121 1135689999999999999999999998877766553 2 34578899999999999999999988654
Q ss_pred ccCCCC-CCCCCCCCccccccCCCCCCCCcceEeeec----ccccccccccCCCCcccccc
Q 001325 719 SRSNYL-PPNTGPANAAMSQIDGARSVPAAPIHVDIR----SNRLGNISAGGFGSPHTAPF 774 (1100)
Q Consensus 719 ~rs~~~-~~~~~~~~~~~~~~d~~~s~Ps~~l~i~~p----~~~l~NlA~~~fGei~rf~i 774 (1100)
...... .+......+ .......-.+++.-++| ++.|.. .+..||+|+.+.|
T Consensus 155 ~~~~i~v~~~~~~~~~----~~~~~~~~~~l~V~nl~~~~tee~L~~-~F~~fG~i~~~~i 210 (562)
T TIGR01628 155 NDKEVYVGRFIKKHER----EAAPLKKFTNLYVKNLDPSVNEDKLRE-LFAKFGEITSAAV 210 (562)
T ss_pred cCceEEEecccccccc----ccccccCCCeEEEeCCCCcCCHHHHHH-HHHhcCCEEEEEE
Confidence 411110 000000000 00000111233333566 555555 6778999988777
No 4
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.7e-17 Score=167.32 Aligned_cols=68 Identities=25% Similarity=0.492 Sum_probs=64.2
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
-++||||||+++|++.|||.+|.+||+|.+||+++ ++|||||||+|.+||.+|+++|+|+.+| |||+.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 57999999999999999999999999999999998 9999999999999999999999999998 55554
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=1.2e-15 Score=176.11 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=117.6
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccC
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~~ 641 (1100)
..++|||+||+.++++++|.+.|++||.|.++.+.. .||||||+|++.++|.+|++.|+|..+. .|......-
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 356899999999999999999999999999999864 6899999999999999999999998765 444332110
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.... .+......+.|||++++..+++|+|...|..+|.+..+.+. + ...++..+++|++.++|..|++.|+++..
T Consensus 167 ~~~~--~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i 244 (562)
T TIGR01628 167 KHER--EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI 244 (562)
T ss_pred cccc--ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe
Confidence 0000 01123356789999999999999999999987766555442 2 23456899999999999999999998876
Q ss_pred c
Q 001325 719 S 719 (1100)
Q Consensus 719 ~ 719 (1100)
.
T Consensus 245 ~ 245 (562)
T TIGR01628 245 G 245 (562)
T ss_pred c
Confidence 4
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.66 E-value=6.7e-16 Score=176.48 Aligned_cols=148 Identities=18% Similarity=0.130 Sum_probs=115.7
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--CCcee----EEEEeeccC-
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDVGL- 641 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~Lq--G~~~~----RI~F~r~~~- 641 (1100)
|||.||||||+.+++|+||+++|++||+|.++.+.+.|+||||+|++.++|.+|++.|+ |..+. +|+|+...-
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 68999999999999999999999999999999999999999999999999999999864 44443 677764321
Q ss_pred CCCcccccccccc--cceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCC--cccccccCCHHHHHHHHHHhhhhc
Q 001325 642 GTKGVINGVAVGS--CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE--GALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 642 gsrg~~~Gva~~~--Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee--~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
...+--++...++ ...|||++++..++.|+|...|..+|.+..+.+ +... ..++|||++.++|.+|++.|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i--~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVT--FTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEE--EecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 1111000001122 347899999999999999999988776555543 2233 479999999999999999999987
Q ss_pred c
Q 001325 718 K 718 (1100)
Q Consensus 718 ~ 718 (1100)
.
T Consensus 159 i 159 (481)
T TIGR01649 159 I 159 (481)
T ss_pred c
Confidence 4
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=9.3e-16 Score=180.26 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=121.9
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG 640 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~ 640 (1100)
..|+||||||+.+++|++|+++|++||+|.+|.+. ..||||||+|.+.++|..|++.|+|..+. +|++.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999984 27999999999999999999999998876 56665542
Q ss_pred CC--CCccccc--ccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHH
Q 001325 641 LG--TKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 641 ~g--srg~~~G--va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
-. .+...+. ......+.||||+++..++.|+|...|..+|.+..+.+. | ...++..+++|++.++|..|...
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 11 1111111 112346899999999999999999999988766665542 2 45678999999999999999999
Q ss_pred hhhhccc
Q 001325 713 LRQHRKS 719 (1100)
Q Consensus 713 l~~~r~~ 719 (1100)
|+++-.+
T Consensus 266 mNg~elg 272 (612)
T TIGR01645 266 MNLFDLG 272 (612)
T ss_pred hCCCeeC
Confidence 9988644
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.62 E-value=4.2e-15 Score=170.03 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=119.8
Q ss_pred ccccceEEeccCCC-cccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 567 FSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~-~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
-.++++||||||+. .+++++|+.+|+.||.|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|.|.+..
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 46789999999998 699999999999999999999876 5799999999999999999999999775 67766322
Q ss_pred C-----------CC---Ccccc----cc----------cccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCC
Q 001325 641 L-----------GT---KGVIN----GV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC 692 (1100)
Q Consensus 641 ~-----------gs---rg~~~----Gv----------a~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlse 692 (1100)
. |. ++..+ +. ...+++.|||+++|..++.|+|..-|..+|......+..+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~ 431 (481)
T TIGR01649 352 NVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPK 431 (481)
T ss_pred cccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecC
Confidence 1 10 11100 00 012678999999999999999998888766522333332332
Q ss_pred ----CcccccccCCHHHHHHHHHHhhhhccc
Q 001325 693 ----EGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 693 ----e~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
++..+|||.+.+||..|+..|+++-..
T Consensus 432 ~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~ 462 (481)
T TIGR01649 432 DNERSKMGLLEWESVEDAVEALIALNHHQLN 462 (481)
T ss_pred CCCcceeEEEEcCCHHHHHHHHHHhcCCccC
Confidence 478999999999999999999987654
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=4.2e-15 Score=160.27 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=118.9
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~------RI~F~ 637 (1100)
.++||||||+.++++++|+.+|++||.|..+.+.. .||||||+|.+.+||..|++.|+|..+. +++|+
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 46899999999999999999999999999888753 5899999999999999999999998652 66776
Q ss_pred eccC--CC----------------Cccc----------------------------------------------------
Q 001325 638 DVGL--GT----------------KGVI---------------------------------------------------- 647 (1100)
Q Consensus 638 r~~~--gs----------------rg~~---------------------------------------------------- 647 (1100)
+... .. ++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 3211 00 0000
Q ss_pred -----cccc--------ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHH
Q 001325 648 -----NGVA--------VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAM 710 (1100)
Q Consensus 648 -----~Gva--------~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak 710 (1100)
.+.. .+.++.||||+++..++.|+|.+-|.++|.+..+.+. | ...++..+|+|++.+||.+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 0000 1234479999999999999999999988877666553 3 456789999999999999999
Q ss_pred HHhhhhccc
Q 001325 711 AHLRQHRKS 719 (1100)
Q Consensus 711 ~~l~~~r~~ 719 (1100)
+.|+++..+
T Consensus 329 ~~lnG~~~~ 337 (352)
T TIGR01661 329 LSLNGYTLG 337 (352)
T ss_pred HHhCCCEEC
Confidence 999998865
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=4.1e-15 Score=166.43 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=115.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
...++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|+. |+|..+. +|.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 3478999999999999999999999999999999854 58999999999999999996 8998775 34333
Q ss_pred ecc--CCCCcc--cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHH
Q 001325 638 DVG--LGTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTA 709 (1100)
Q Consensus 638 r~~--~gsrg~--~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~A 709 (1100)
... ...+.. ..| ....++.||||+++..++.++|...|..+|.+..+.+. + ....+.++|+|.+.++|..|
T Consensus 166 ~~~~~~~~~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 166 QAEKNRAAKAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred chhhhhhhhcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 211 000000 000 01237899999999999999999999987766555442 2 24467899999999999999
Q ss_pred HHHhhhhcc
Q 001325 710 MAHLRQHRK 718 (1100)
Q Consensus 710 k~~l~~~r~ 718 (1100)
+..|+++..
T Consensus 245 ~~~l~g~~i 253 (457)
T TIGR01622 245 LEVMNGFEL 253 (457)
T ss_pred HHhcCCcEE
Confidence 999998553
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.59 E-value=8.8e-15 Score=165.59 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=119.5
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhcc------------CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~f------------GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~- 632 (1100)
.-...++||||||+.++|+++|+++|..| ++|.++++-..+|||||+|++.++|..|+ .|+|..+.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g 249 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSN 249 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeC
Confidence 34568999999999999999999999974 57888999889999999999999999999 59997654
Q ss_pred -EEEEeeccCCC-----------Cc---ccccc--------cccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e
Q 001325 633 -RVKFMDVGLGT-----------KG---VINGV--------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T 688 (1100)
Q Consensus 633 -RI~F~r~~~gs-----------rg---~~~Gv--------a~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~ 688 (1100)
.|++.++.--. .. ...+. .....+.||||+++..++.|+|..-|..+|.+..+.+ .
T Consensus 250 ~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 250 VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 45554432000 00 00000 1124689999999999999999999998776655544 2
Q ss_pred c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 689 D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 689 D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+ ....+.++|||.+.++|..|+..|+++..+
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~ 363 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG 363 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3 446789999999999999999999987766
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=9.8e-15 Score=171.10 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=129.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeeccC
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGL 641 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~~~~---RI~F~r~~~ 641 (1100)
.++||||||+.+++|+||+++|++||+|.++++. .+||||||+|.+.+||.+|++.|+|..+. .|.+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~--- 134 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI--- 134 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc---
Confidence 4899999999999999999999999999999985 38999999999999999999999997652 111111
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeec-------CCCCcccccccCCHHHHHHHHHHhh
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-------LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~D-------lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
....+.||||+|+..+++|||+.||.++... .+.++- ...++..+|||++.++|..|++.|.
T Consensus 135 ----------S~~~~rLFVgNLP~~~TeeeL~eeFskv~eg-vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~ 203 (578)
T TIGR01648 135 ----------SVDNCRLFVGGIPKNKKREEILEEFSKVTEG-VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLM 203 (578)
T ss_pred ----------cccCceeEeecCCcchhhHHHHHHhhcccCC-ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhh
Confidence 2257899999999999999999999986421 111111 2347889999999999999988775
Q ss_pred hhcc---ccCCCCCCCCCCCCccccccCCCCCCCCcceEee-ec----ccccccccccCC--CCcccccc
Q 001325 715 QHRK---SRSNYLPPNTGPANAAMSQIDGARSVPAAPIHVD-IR----SNRLGNISAGGF--GSPHTAPF 774 (1100)
Q Consensus 715 ~~r~---~rs~~~~~~~~~~~~~~~~~d~~~s~Ps~~l~i~-~p----~~~l~NlA~~~f--Gei~rf~i 774 (1100)
..+. ++.-...... .. ...+........+|+|+ ++ ++.|.. .+..| |+|++.++
T Consensus 204 ~gki~l~Gr~I~VdwA~--p~---~~~d~~~~~~~k~LfVgNL~~~~tee~L~~-~F~~f~~G~I~rV~~ 267 (578)
T TIGR01648 204 PGRIQLWGHVIAVDWAE--PE---EEVDEDVMAKVKILYVRNLMTTTTEEIIEK-SFSEFKPGKVERVKK 267 (578)
T ss_pred ccceEecCceEEEEeec--cc---ccccccccccccEEEEeCCCCCCCHHHHHH-HHHhcCCCceEEEEe
Confidence 4322 1110000000 00 00011011234556654 44 555666 67788 99999654
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.55 E-value=3.2e-14 Score=161.12 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=118.1
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
....++||||||+..+++++|+++|+.||+|..|.+.. .+|||||+|.+.++|..|++.|+|..++ +|++
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999998853 5899999999999999999999999886 6777
Q ss_pred eeccCCCC----------------cc---cccccccccceEEEccCCCcc----------hhHHHHHhhhcccccCCcee
Q 001325 637 MDVGLGTK----------------GV---INGVAVGSCFHVYVGNIPNQW----------AKDEILHESYKVVYKGPYMV 687 (1100)
Q Consensus 637 ~r~~~gsr----------------g~---~~Gva~~~Sr~LwVG~Iss~~----------~kEELfsE~dkag~kgPv~f 687 (1100)
+..+.... +. +.-+...+++.|||.++.... +.|+|..||.++|.+..+.+
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 64431110 00 001112478999999986432 35778899998886666654
Q ss_pred e-c------CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 688 T-D------LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 688 ~-D------lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
. . ....+.++|+|++.++|..|+..|+|...+
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~ 490 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN 490 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 2 1 123467899999999999999999997643
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=3.5e-14 Score=159.01 Aligned_cols=152 Identities=19% Similarity=0.271 Sum_probs=117.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
+.+++||||||+.+++|++|+++|+.||.|..|.+. ..+|||||+|.+.++|..|++.|+|..+. +|.|+
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 348999999999999999999999999999999987 35799999999999999999999997664 78884
Q ss_pred eccC------------------CC----------------------------------------Ccccc---------c-
Q 001325 638 DVGL------------------GT----------------------------------------KGVIN---------G- 649 (1100)
Q Consensus 638 r~~~------------------gs----------------------------------------rg~~~---------G- 649 (1100)
.... |. .|.++ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T TIGR01622 264 QDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGA 343 (457)
T ss_pred cCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccc
Confidence 2100 00 00000 0
Q ss_pred ---------c----cccccceEEEccCCCcch----------hHHHHHhhhcccccCCceeecCCCCcccccccCCHHHH
Q 001325 650 ---------V----AVGSCFHVYVGNIPNQWA----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEA 706 (1100)
Q Consensus 650 ---------v----a~~~Sr~LwVG~Iss~~~----------kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA 706 (1100)
+ -..+++.|+|.++-.... +|+|..|+.++|.+..+.+..-...+.++|+|.+.++|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 344 LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHH
Confidence 0 002467888888854433 57899999988877666665455678899999999999
Q ss_pred HHHHHHhhhhccc
Q 001325 707 TTAMAHLRQHRKS 719 (1100)
Q Consensus 707 ~~Ak~~l~~~r~~ 719 (1100)
..|++.|+++.-+
T Consensus 424 ~~A~~~lnGr~f~ 436 (457)
T TIGR01622 424 LAAFQALNGRYFG 436 (457)
T ss_pred HHHHHHhcCcccC
Confidence 9999999998754
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=163.54 Aligned_cols=137 Identities=23% Similarity=0.352 Sum_probs=113.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccC
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGL 641 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~r~~~ 641 (1100)
+-.|.+|||.|+.|+.|+||.-+|++-|+|-.|++-. +||||||.|.+-++|..|++.|++..+..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~-------- 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP-------- 152 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--------
Confidence 5579999999999999999999999999999999732 79999999999999999999999986541
Q ss_pred CCCccccccccc-ccceEEEccCCCcchhHHHHHhhhccc--------ccCCceeecCCCCcccccccCCHHHHHHHHHH
Q 001325 642 GTKGVINGVAVG-SCFHVYVGNIPNQWAKDEILHESYKVV--------YKGPYMVTDLSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 642 gsrg~~~Gva~~-~Sr~LwVG~Iss~~~kEELfsE~dkag--------~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
|-.-||++. .+|.|+||+||..|.||||+.|+.++. +..+.. -...++.++|||++..-|.-|+.-
T Consensus 153 ---GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d--k~KNRGFaFveYe~H~~Aa~aRrK 227 (506)
T KOG0117|consen 153 ---GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD--KTKNRGFAFVEYESHRAAAMARRK 227 (506)
T ss_pred ---CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc--cccccceEEEEeecchhHHHHHhh
Confidence 223345554 799999999999999999999999987 222221 145689999999999999888665
Q ss_pred hhhhc
Q 001325 713 LRQHR 717 (1100)
Q Consensus 713 l~~~r 717 (1100)
|-..+
T Consensus 228 l~~g~ 232 (506)
T KOG0117|consen 228 LMPGK 232 (506)
T ss_pred ccCCc
Confidence 55433
No 16
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.48 E-value=1.6e-13 Score=161.14 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=49.8
Q ss_pred ccccccCCcccceeeeecccccccccccccCCCCccc-cccccccchhhH-HHHhhccCCCCCccchhcccCCCC
Q 001325 1014 QGALCKSGVHYCTIYAQREESDICKYTHDISEPAEWP-AKLDMTKRTDFR-HVKSTFTSTPPNKREVCRLVPSSP 1086 (1100)
Q Consensus 1014 QG~L~KSG~~yCtIYaqRidSDICkyt~t~~Eps~WP-s~EDvTlRtDfq-~LealFsskPpkKrEvcrLipss~ 1086 (1100)
..-+.|..+.|.++.|..+.. ..++|+|||. +.||.+++.|+. .|+.+|+.++..++|-.-.+=-..
T Consensus 616 pKK~~k~e~~Mrr~nW~kI~p------~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt 684 (1102)
T KOG1924|consen 616 PKKVYKPEVPMRRFNWSKIVP------RDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKT 684 (1102)
T ss_pred ccccCCCCCccccCCccccCc------cccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccc
Confidence 445677777777777777532 3478999999 678888888886 999999999877777655544433
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=3.8e-13 Score=157.97 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=113.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhcCCc--ee----E
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIRNHF--SW----R 633 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGp-Le~V~~~-------~~rgfAFVeF~~i~DAv~A~~~LqG~~--~~----R 633 (1100)
...++||||||+.++++++|.++|.+|+. +.++.++ ..||||||+|++.+||..|++.|.... +| +
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999974 4555554 258999999999999999999887543 23 6
Q ss_pred EEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcc--cccCCceeecCCCCcccccccCCHHHHHHHHH
Q 001325 634 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 711 (1100)
Q Consensus 634 I~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dka--g~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~ 711 (1100)
|+++.+..... -.....++.||||+++..+++|+|..+|..+ +.+..+.+. ++.++|||++.+||..|++
T Consensus 216 VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~----rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI----RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee----cCeEEEEeCCHHHHHHHHH
Confidence 77776532111 0011246899999999999999999999987 655555432 4579999999999999999
Q ss_pred Hhhhhccc
Q 001325 712 HLRQHRKS 719 (1100)
Q Consensus 712 ~l~~~r~~ 719 (1100)
.|+++..+
T Consensus 288 ~lnG~~i~ 295 (578)
T TIGR01648 288 ELNGKELE 295 (578)
T ss_pred HhCCCEEC
Confidence 99987655
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.8e-13 Score=143.65 Aligned_cols=145 Identities=22% Similarity=0.330 Sum_probs=119.8
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+=+++||.|.+.++-++|++.|.+||+|.+-++.+ +|||+||-|-+-+||+.|+..|+|..++ |-..+-
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 366899999999999999999999999999988854 8999999999999999999999999887 455553
Q ss_pred ccCCCCcccccccc----------cccceEEEccCCCcchhHHHHHhhhcccccCCc-eeecCCCCcccccccCCHHHHH
Q 001325 639 VGLGTKGVINGVAV----------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEAT 707 (1100)
Q Consensus 639 ~~~gsrg~~~Gva~----------~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv-~f~Dlsee~aLLmEF~s~eEA~ 707 (1100)
+.. +-+||..- ..++.+|||+|++..++|+|-.-|. .+|++ ++..|-+.+.++|-|++-|.|.
T Consensus 141 RKp---~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs---~fG~I~EVRvFk~qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 141 RKP---SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS---PFGPIQEVRVFKDQGYAFVRFETKEAAA 214 (321)
T ss_pred cCc---cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc---cCCcceEEEEecccceEEEEecchhhHH
Confidence 332 12333222 2589999999999777777666555 56666 5567888999999999999999
Q ss_pred HHHHHhhhhccc
Q 001325 708 TAMAHLRQHRKS 719 (1100)
Q Consensus 708 ~Ak~~l~~~r~~ 719 (1100)
.|..+|++...+
T Consensus 215 hAIv~mNntei~ 226 (321)
T KOG0148|consen 215 HAIVQMNNTEIG 226 (321)
T ss_pred HHHHHhcCceeC
Confidence 999999998876
No 19
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.8e-12 Score=133.62 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=114.2
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~ 641 (1100)
.+|.+|||||++++.|.||+.+|-+||+|..|-+.- +..||||+|++.+||++|+..-+|-..- ||||.+-+-
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 478999999999999999999999999999988752 6789999999999999999998887542 999997652
Q ss_pred CC-----------Ccc-cc-----cccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHH
Q 001325 642 GT-----------KGV-IN-----GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPE 704 (1100)
Q Consensus 642 gs-----------rg~-~~-----Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~e 704 (1100)
++ +|- -. +..-.+-..+.|-+.|++-+-.+|..-|++ -+.+-|.+..-.+.=.+||.+-|
T Consensus 85 ~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe---aGdvCfadv~rDg~GvV~~~r~e 161 (241)
T KOG0105|consen 85 SSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE---AGDVCFADVQRDGVGVVEYLRKE 161 (241)
T ss_pred cccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh---hCCeeeeeeecccceeeeeeehh
Confidence 11 110 00 000113456889999999899999999996 45666666666678889999999
Q ss_pred HHHHHHHHhhhhc
Q 001325 705 EATTAMAHLRQHR 717 (1100)
Q Consensus 705 EA~~Ak~~l~~~r 717 (1100)
|-.-|...|.-++
T Consensus 162 DMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 162 DMKYAVRKLDDQK 174 (241)
T ss_pred hHHHHHHhhcccc
Confidence 9888877766544
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.1e-12 Score=143.71 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=123.1
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 636 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~-------RI~F 636 (1100)
.=+||||-|+..++|.||+++|++||.+..|.+.+ .+||+||-|...+||.+|+.+|.+.+.. .|||
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 34799999999999999999999999999998854 7899999999999999999999988654 8999
Q ss_pred eeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--cCCCCcccccccCCHHHHHHHHHHh
Q 001325 637 MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTAMAHL 713 (1100)
Q Consensus 637 ~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~--Dlsee~aLLmEF~s~eEA~~Ak~~l 713 (1100)
+|.- |-. +...+.||||-++.+.+++|+-.-|-+||.++++.+ . +..++++++|-|.+-|-|.+|++.|
T Consensus 114 Ad~E---~er-----~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 114 ADGE---RER-----IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred cchh---hhc-----cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 9751 100 245789999999999999999999999998988866 3 5789999999999999999999999
Q ss_pred hhhc
Q 001325 714 RQHR 717 (1100)
Q Consensus 714 ~~~r 717 (1100)
++..
T Consensus 186 ng~~ 189 (510)
T KOG0144|consen 186 NGTQ 189 (510)
T ss_pred ccce
Confidence 9854
No 21
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.22 E-value=2.3e-11 Score=101.39 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=56.8
Q ss_pred EEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 573 LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
||||||+.+++++||+..|+.||+|..+.+.+ .++||||+|.+.+||..|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 79999999999999999999999999999876 5999999999999999999999997664
No 22
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.21 E-value=4.7e-11 Score=118.25 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=63.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++|+||+++|++||+|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3578999999999999999999999999999998852 5899999999999999999999998765 67666
Q ss_pred e
Q 001325 638 D 638 (1100)
Q Consensus 638 r 638 (1100)
.
T Consensus 112 ~ 112 (144)
T PLN03134 112 N 112 (144)
T ss_pred C
Confidence 4
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=8.7e-11 Score=126.02 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=116.9
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
--+|.|-+|+.+.|++||+.+|+..|+||+.+..| +-||.||+|.+..||++|+..|+|-++- +|-|+|+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 34799999999999999999999999999999876 4599999999999999999999998764 8999998
Q ss_pred cCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhh
Q 001325 640 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 640 ~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
-.. .|. --+|||-++|...+-.||+.-|.-++.+-..++. ..-+++.-++-|++-+||..|.+.|++
T Consensus 121 Ss~---~Ik------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 121 SSD---SIK------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred Chh---hhc------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 321 122 3579999999988887777777766644433331 255788899999999999999999999
Q ss_pred hccc
Q 001325 716 HRKS 719 (1100)
Q Consensus 716 ~r~~ 719 (1100)
+...
T Consensus 192 ~~P~ 195 (360)
T KOG0145|consen 192 QKPS 195 (360)
T ss_pred CCCC
Confidence 8754
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.1e-10 Score=131.89 Aligned_cols=208 Identities=17% Similarity=0.212 Sum_probs=149.8
Q ss_pred CCCCCCCCCCC--CCCcCCccccc--cCcCCCCCC---CCCCCCCcccccccCCCCCCCCCCCCCCCcceeeeccCCccc
Q 001325 491 MPRDLPNPQML--SPAARTPLHFR--NNSFEGRNH---FPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAA 563 (1100)
Q Consensus 491 ~pr~~~~~~~~--~p~~~~~~d~~--~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~p~~~~~~~s~~~~~~~g~p~a 563 (1100)
+|||+-.-.+. +-.+-.-.|+| -|.|+|.|- |+--.+-+-+++.+--.|=.+ .| -|-+.-
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E--ir-----------~GK~ig 157 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE--IR-----------PGKLLG 157 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc--cc-----------CCCEeE
Confidence 78888766553 22234445555 467888775 554443334444432211110 01 122222
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhh-cCC-cee-
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYI-RNH-FSW- 632 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGp-Le~V~~~-------~~rgfAFVeF~~i~DAv~A~~~L-qG~-~~~- 632 (1100)
.-|--+-|.||||||+-+-+++||.++|.+.++ +.+|.++ +.||||||+|+|-+-|..|++-| +|+ .+|
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 333446799999999999999999999999998 6688886 38999999999999999998765 555 345
Q ss_pred ---EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHH
Q 001325 633 ---RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTA 709 (1100)
Q Consensus 633 ---RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~A 709 (1100)
-|+.+++...-. +-.....+.|||=|+.-.++.|.|..+|..++++..+... +..++|-|.+-+||..|
T Consensus 238 n~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~----rDYaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP----RDYAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc----cceeEEeecchHHHHHH
Confidence 789998753322 1122358999999999999999999999998877776432 55899999999999999
Q ss_pred HHHhhhhccc
Q 001325 710 MAHLRQHRKS 719 (1100)
Q Consensus 710 k~~l~~~r~~ 719 (1100)
|+.++++-.+
T Consensus 310 m~~~ngkeld 319 (506)
T KOG0117|consen 310 MKETNGKELD 319 (506)
T ss_pred HHHhcCceec
Confidence 9999998876
No 25
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.99 E-value=9.1e-10 Score=93.66 Aligned_cols=60 Identities=30% Similarity=0.496 Sum_probs=54.0
Q ss_pred EEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 573 LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
|+|+||+++++++||++.|++||.|+.|.+... +++|||+|.+.+||.+|++.++|..+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~ 65 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID 65 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC
Confidence 799999999999999999999999999999875 799999999999999999999986553
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=5.3e-10 Score=124.03 Aligned_cols=150 Identities=21% Similarity=0.231 Sum_probs=122.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc-
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG- 640 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~- 640 (1100)
-|.+|||+|+-...|+-|+..|..||||.++-+- .-+|||||||+=++-|.-|.+-|+|.-++ -|++.|+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5889999999999999999999999999999872 37999999999999999999999999887 68888875
Q ss_pred CCC-Ccccccccc--cccceEEEccCCCcchhHHHHHhhhcccccCCcee----ecCCCCcccccccCCHHHHHHHHHHh
Q 001325 641 LGT-KGVINGVAV--GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHL 713 (1100)
Q Consensus 641 ~gs-rg~~~Gva~--~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f----~Dlsee~aLLmEF~s~eEA~~Ak~~l 713 (1100)
+++ +..|+-|.. +.-+.+||..|.+..++++|.+=|++||.+--+.. +...-++.=++||.+...-..|.+.|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 332 222333332 46789999999999999999999999885554432 23556788899999988877888888
Q ss_pred hhhccc
Q 001325 714 RQHRKS 719 (1100)
Q Consensus 714 ~~~r~~ 719 (1100)
|-.-.|
T Consensus 273 NlFDLG 278 (544)
T KOG0124|consen 273 NLFDLG 278 (544)
T ss_pred chhhcc
Confidence 776544
No 27
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=1.2e-07 Score=113.04 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=60.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.|++||||.|.-+++|.||..+|+.||.|++|.+-.+|++|||--.+-.||.+|+..|..-.+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 4899999999999999999999999999999999999999999999999999999999965543
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.97 E-value=2.2e-09 Score=110.91 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=114.3
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCC
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLG 642 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~~g 642 (1100)
.+||||||..-++|+-|-++|-+-||+-++.+= ..+|||||||++.+||.=|++.|++-++. +|+|....-+
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 579999999999999999999999999999872 27999999999999999999999987776 8999987422
Q ss_pred CCcccccccccccceEEEccCCCcchhHHHHHhhhcccc--cCCceee---cCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 643 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY--KGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 643 srg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~--kgPv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
++ -.--.-+|+||+.-+.+....|-+-|.++|. ..|-.+. ....+...++.|++.|.+++|+..|+++-
T Consensus 90 ~~------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 90 QK------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred cc------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 21 1112368999999997666666666676662 2222121 24667789999999999999999999987
Q ss_pred cc
Q 001325 718 KS 719 (1100)
Q Consensus 718 ~~ 719 (1100)
..
T Consensus 164 l~ 165 (203)
T KOG0131|consen 164 LC 165 (203)
T ss_pred hc
Confidence 66
No 29
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1e-09 Score=116.08 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=109.6
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCCCCcc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKGV 646 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~gsrg~ 646 (1100)
..+|||+|+..+.+.||+++|..||.|.+|.+.. ||+||+|.|..||.+|+..|+|+.++ .+++++..-|.+|.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999999876 88999999999999999999999887 46676643222211
Q ss_pred -ccc----------ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhh
Q 001325 647 -ING----------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 647 -~~G----------va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
++| +.....+.|-|=+++.-..--+|..-|..++.. +. .+. ..++.+++|.+.+||..|+.-+++
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~~--~~~-~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-TY--VDA-RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-ch--hhh-hccccceeehhhhhhhhcchhccc
Confidence 222 222346667777777666556666666655555 22 222 679999999999999999999888
Q ss_pred hccc
Q 001325 716 HRKS 719 (1100)
Q Consensus 716 ~r~~ 719 (1100)
+-+-
T Consensus 156 ~~~~ 159 (216)
T KOG0106|consen 156 KKLN 159 (216)
T ss_pred hhhc
Confidence 6543
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=98.92 E-value=4.3e-09 Score=85.45 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=56.4
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEeccC----ceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK----GFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~r----gfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+|||+||+.+++++||++.|.+||++..+.+.+.+ |||||+|.+.++|.+|++.|+|..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 48999999999999999999999999999988755 99999999999999999999996543
No 31
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.89 E-value=3.4e-09 Score=114.67 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=61.4
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.++||||||+.+++|+||++.|+.||+|++|++.. .+|||||+|++.++|..|+. |+|..++ +|...+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 68999999999999999999999999999999975 47999999999999999995 9999887 555544
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=8.9e-09 Score=116.14 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=111.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCCCCc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG 645 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~~gsrg 645 (1100)
..|||| ++|||++|.+.|+++|++.+|++-+ +-|||||+|.+.+||.+|++.|+...+. .||-|.++ |.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~---rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ---RD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc---cC
Confidence 469999 9999999999999999999999855 6799999999999999999999998775 67777652 21
Q ss_pred ccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 646 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 646 ~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
++ -+||=+.+.+++.+.|..=|..||.+-.+.+. + -..++. +++|+++++|..|...|++....
T Consensus 76 --------~~-~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~ 141 (369)
T KOG0123|consen 76 --------PS-LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN 141 (369)
T ss_pred --------Cc-eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC
Confidence 11 19999999999999888888888777666552 2 226677 99999999999999999996654
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.87 E-value=2.5e-08 Score=97.95 Aligned_cols=116 Identities=22% Similarity=0.270 Sum_probs=90.4
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee-
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD- 638 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r- 638 (1100)
.+.||||||+.++++++|..+|..||++..|.+.. .||||||+|.+.++|..|++.|+|..+. +|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 79999999999999999999999999998888743 6699999999999999999999988664 555532
Q ss_pred -ccCCCCcc-----------ccccc--ccccceEEEccCCCcchhHHHHHhhhcccccCCc
Q 001325 639 -VGLGTKGV-----------INGVA--VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY 685 (1100)
Q Consensus 639 -~~~gsrg~-----------~~Gva--~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv 685 (1100)
.+...... ..+.. ......+++++.+..+..+++...+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRA 255 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceee
Confidence 11111111 00000 1258899999999999999999999987755333
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.84 E-value=7.1e-09 Score=115.95 Aligned_cols=71 Identities=13% Similarity=0.250 Sum_probs=63.0
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCce------eEEEE
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS------WRVKF 636 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~------~RI~F 636 (1100)
...+|||+||+.++||+||+++|++||.|+.+.+.+. ||||||+|.+.+||++|++.|+|..+ .+|++
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3568999999999999999999999999999998753 59999999999999999999999854 37777
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
++.
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 764
No 35
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.2e-08 Score=111.64 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=72.9
Q ss_pred eeeccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhc
Q 001325 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 627 (1100)
Q Consensus 554 ~~~~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~Lq 627 (1100)
.|.-.+||-|.+ -|=|+||||-|..+.+|+.|+.+|++||+|+.|.+++ ++|||||+|++.+|-..|.+..+
T Consensus 87 ~wdP~~dp~a~g--DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 87 LWDPNNDPNAIG--DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred hcCCCCCCcccC--CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 689999999998 8999999999999999999999999999999999864 79999999999999999999999
Q ss_pred CCcee
Q 001325 628 NHFSW 632 (1100)
Q Consensus 628 G~~~~ 632 (1100)
|..+-
T Consensus 165 G~~Id 169 (335)
T KOG0113|consen 165 GIKID 169 (335)
T ss_pred Cceec
Confidence 98774
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=9.1e-09 Score=112.22 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=107.5
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCCCCccccc
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVING 649 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~~gsrg~~~G 649 (1100)
+|+||||+..+++.+|+.+|++||++-.--+ .|+|+||.-++-.-|++|++.|.|-++- -|.+--+ ..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDI--vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS--ksK----- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDI--VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS--KSK----- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeee--ecccceEEeecccccHHHHhhcccceecceEEEEEec--ccc-----
Confidence 7999999999999999999999999876555 4699999999999999999999998775 3443322 122
Q ss_pred ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 650 VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 650 va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.+.+-.|.||||+....-+||-.-|.+.+-.-.+.+ .++..+|-|+-.+||..|.+.|++.
T Consensus 75 --sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdi----vkdy~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 75 --SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI----VKDYAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred --CCCccccccCCCCccccCHHHhhhhcccCCceeeee----ecceeEEEEeeccchHHHHhccccc
Confidence 447889999999999999999998887665555443 4678999999999999999877763
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.8e-08 Score=107.84 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=64.7
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc----eeEEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF----SWRVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~----~~RI~F~r 638 (1100)
-++.|=|-||+.+++|.||+++|.+||+|..|.+++ .||||||.|.+.+||++|++.|+|.- +.|||+.+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 355699999999999999999999999999999975 79999999999999999999999983 33999988
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 7
No 38
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.5e-08 Score=120.27 Aligned_cols=20 Identities=5% Similarity=0.115 Sum_probs=10.2
Q ss_pred ceeccccccCCcccceeeee
Q 001325 1011 YQWQGALCKSGVHYCTIYAQ 1030 (1100)
Q Consensus 1011 ~qWQG~L~KSG~~yCtIYaq 1030 (1100)
-.|..-+.=-..+|.+|...
T Consensus 618 K~~k~e~~Mrr~nW~kI~p~ 637 (1102)
T KOG1924|consen 618 KVYKPEVPMRRFNWSKIVPR 637 (1102)
T ss_pred ccCCCCCccccCCccccCcc
Confidence 34555555555566554443
No 39
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.75 E-value=1.7e-08 Score=119.90 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=59.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
..++||||||+.+++++||+.+|++||+|.++.+.+ .||||||+|++.++|.+|++.|+|..+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 357899999999999999999999999999999864 5899999999999999999999998765
No 40
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=2.6e-06 Score=98.47 Aligned_cols=112 Identities=10% Similarity=0.019 Sum_probs=75.8
Q ss_pred ccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEeeccCCCCccccccccccc
Q 001325 582 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDVGLGTKGVINGVAVGSC 655 (1100)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~------RI~F~r~~~gsrg~~~Gva~~~S 655 (1100)
.+.+|=+.+|...|+ +++++...=-=-|+.|.+. +..-++.+-|.... |-.|+|. |.+...
T Consensus 21 Lt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~--~~W~~~~~~Gal~lVkD~~~rsyFlrl----------~di~~~ 87 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDP--NHWNKTGLCGALCLVKDNAQRSYFLRL----------VDIVNN 87 (569)
T ss_pred cchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCCh--hhhccccCceeEEEeeccccceeeeEE----------eeecCc
Confidence 677888899999999 8888743111114555555 46666777775332 6667765 334456
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
+.|| +.||...|+-.. ...-| ++--++|.+-|.|.+++||..|+++|+.+.
T Consensus 88 rliW---------dqELY~nf~y~q--~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 88 RLIW---------DQELYQNFEYRQ--PRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred eeee---------hHHhhhhceecc--CccceeeeccccceeeecccCHHHHHHHHHHHHHHh
Confidence 7888 678888888633 22222 334566778899999999999999998654
No 41
>smart00360 RRM RNA recognition motif.
Probab=98.71 E-value=4.3e-08 Score=79.11 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=53.0
Q ss_pred eccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 575 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 575 VGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
|+||+.+++++||+..|+.||+|+.+.+... +|||||+|.+.++|..|++.|+|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999998764 579999999999999999999986654
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.71 E-value=6e-08 Score=79.14 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=56.5
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+|+|++|+.++++++|+..|.+||+|..+.+... +|+|||+|.+.++|..|++.|+|..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4899999999999999999999999999999863 799999999999999999999998643
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=5.2e-08 Score=115.34 Aligned_cols=149 Identities=18% Similarity=0.155 Sum_probs=116.3
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec--c-------CceEEEEecCHHHHHHHHHhhcCCcee--
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--I-------KGFALVEYINIIDAIRAREYIRNHFSW-- 632 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~--~-------rgfAFVeF~~i~DAv~A~~~LqG~~~~-- 632 (1100)
-+..++++ |||-||.-+.|.++|+..|.++|.|-++.+.- . .|||||+|.+.++|..|++.|||+.+-
T Consensus 510 ~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH 588 (725)
T KOG0110|consen 510 EDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH 588 (725)
T ss_pred hccccchh-hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc
Confidence 55666666 99999999999999999999999999997743 2 299999999999999999999999874
Q ss_pred --EEEEeecc-CCCCcccccccc-cccceEEEccCCCcchhHHHHHhhhcccccCCceeec----CCCCcccccccCCHH
Q 001325 633 --RVKFMDVG-LGTKGVINGVAV-GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPE 704 (1100)
Q Consensus 633 --RI~F~r~~-~gsrg~~~Gva~-~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~D----lsee~aLLmEF~s~e 704 (1100)
.++|.... -++.| --+.. ..+..|||=|||=+.++.|+..-|.+||.+-.+++.- ...++..+++|-++.
T Consensus 589 ~l~lk~S~~k~~~~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 589 KLELKISENKPASTVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred eEEEEeccCccccccc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 56665410 11111 00011 2467999999999999999999999998776666532 222455899999999
Q ss_pred HHHHHHHHhhh
Q 001325 705 EATTAMAHLRQ 715 (1100)
Q Consensus 705 EA~~Ak~~l~~ 715 (1100)
||.+||.+|-.
T Consensus 667 ea~nA~~al~S 677 (725)
T KOG0110|consen 667 EAKNAFDALGS 677 (725)
T ss_pred HHHHHHHhhcc
Confidence 99999988763
No 44
>PLN03213 repressor of silencing 3; Provisional
Probab=98.70 E-value=2.7e-08 Score=113.81 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=57.7
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec--cCceEEEEecCH--HHHHHHHHhhcCCce
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINI--IDAIRAREYIRNHFS 631 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i--~DAv~A~~~LqG~~~ 631 (1100)
.-.||||||+.+|+++||+..|..||.|.+|.+.+ .||||||+|... .++.+|+..|+|...
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 45799999999999999999999999999999977 899999999987 789999999999864
No 45
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.69 E-value=4.2e-08 Score=81.38 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=42.0
Q ss_pred HHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 587 IRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 587 L~~~F~~fGpLe~V~~~~~r-gfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
|..+|++||+|++|.+.+.+ ++|||+|.+.+||..|++.|+|..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999999999999976 99999999999999999999998765
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.9e-08 Score=98.32 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=66.3
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
..+-...||.||||||+--++|+.|-++|+++|+|..|.+ ..+=||+||+|-..+||.+|++++.|+++=
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 3455678999999999999999999999999999999997 347899999999999999999999999763
Q ss_pred EEEEe
Q 001325 633 RVKFM 637 (1100)
Q Consensus 633 RI~F~ 637 (1100)
||++-
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 66643
No 47
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-08 Score=107.26 Aligned_cols=92 Identities=24% Similarity=0.409 Sum_probs=77.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
-|.||||.|...|+|.-|.+.|-.||.|.+|.+ -+-||||||+|+..+||.+|++.|++..++ ||.|+++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 589999999999999999999999999999987 248999999999999999999999999876 9999987
Q ss_pred cCCCCcccccccccccceEEEccCCCcchhHHHHHhhh
Q 001325 640 GLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESY 677 (1100)
Q Consensus 640 ~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~d 677 (1100)
- | +..++. .+.|++|+-|.-..
T Consensus 90 ~---k-----ikegsq--------kPvWADDdWlkk~~ 111 (298)
T KOG0111|consen 90 E---K-----IKEGSQ--------KPVWADDDWLKKQQ 111 (298)
T ss_pred c---c-----ccCCCC--------CCcccCcHHHHHhc
Confidence 1 1 112233 56677888776655
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.65 E-value=2.4e-07 Score=98.29 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=125.9
Q ss_pred ccccccceEEeccCCCcccHHHHHH----HhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRF----QIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~----~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~----R 633 (1100)
....+..+|||-||...+-.+||+. +|+.||.|-+|..+. -||=|||.|.++.-|-.|++.|+|.... |
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445666999999999999999999 999999999999874 8999999999999999999999998665 8
Q ss_pred EEEeecc--CCCC-----------------------cccccc----------------cccccceEEEccCCCcchhHHH
Q 001325 634 VKFMDVG--LGTK-----------------------GVINGV----------------AVGSCFHVYVGNIPNQWAKDEI 672 (1100)
Q Consensus 634 I~F~r~~--~gsr-----------------------g~~~Gv----------------a~~~Sr~LwVG~Iss~~~kEEL 672 (1100)
|-|+... +.++ -..+|- ...+++.|++-+||+....|.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 8888432 1111 112221 1347999999999999999999
Q ss_pred HHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcccc
Q 001325 673 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSR 720 (1100)
Q Consensus 673 fsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~r 720 (1100)
..-+..+.-+..+.++.. -.+-+++||.+...|..|+.++++.++-+
T Consensus 164 ~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred HHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceecc
Confidence 988888877777765442 45778999999999999999999988554
No 49
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=5.3e-08 Score=93.76 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=58.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.+-|||-||+-++|.+|.-++|++||+|.+|++=. -||.|||-|+|+.||+.|++-|.|..++
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC
Confidence 67799999999999999999999999999999843 8999999999999999999999997654
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=2.6e-08 Score=112.84 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=67.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-------EEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-------RVK 635 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~-------RI~ 635 (1100)
..-++||||.|+-.+||.|++++|.+||-||++.+.+ .||||||-|..-+-|+.|+++|+|+... -||
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5578999999999999999999999999999999976 8999999999999999999999999643 799
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
|+|.
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 9998
No 51
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=7.1e-08 Score=104.66 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=63.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~ 637 (1100)
-+.||||||.+..||++|+..|.+||+|-.|++|+.+|||||-|+.-|-|-+|+-.|+|+.+. .||..
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999886 44443
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.61 E-value=9.2e-08 Score=102.77 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=60.4
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 638 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r 638 (1100)
...|+||||++.+||+||++.|+.||+|++|.+.+ .++||||+|++.++|..|+ .|+|..+. +|...+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEe
Confidence 45799999999999999999999999999999987 4589999999999999998 79999876 555443
No 53
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=5.6e-08 Score=102.37 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=62.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
-.|-|-||..-+|.+||+.+|++||.|-+|.|- .+||||||-|.+-.||++|+++|||..+- ||.|++=
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 368999999999999999999999999999983 28999999999999999999999998774 6766654
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.53 E-value=2.9e-07 Score=98.02 Aligned_cols=152 Identities=18% Similarity=0.226 Sum_probs=118.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEE-eccCc------eEEEEecCHHHHHHHHHhhcCCcee-------E
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKG------FALVEYINIIDAIRAREYIRNHFSW-------R 633 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~-~~~rg------fAFVeF~~i~DAv~A~~~LqG~~~~-------R 633 (1100)
.+-|+|||..|+.||-..||--+|.+|---|.-.+ +.+|+ +|||.|.+..+|++|+++|+|-+.= |
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34699999999999999999999999987775444 34555 9999999999999999999998642 9
Q ss_pred EEEeecc--------CCCCcc-----------------------------------------------------------
Q 001325 634 VKFMDVG--------LGTKGV----------------------------------------------------------- 646 (1100)
Q Consensus 634 I~F~r~~--------~gsrg~----------------------------------------------------------- 646 (1100)
|+|+++. .|+-|.
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 9999543 221000
Q ss_pred ----------cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 647 ----------INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 647 ----------~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
-.|-.+..|..|+|.+.++..+.|||..=+..+.-+--.++..-..-+.+++||+.++.|..||.||+|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 1111223588999999999999999998888755444445544555677889999999999999999997
Q ss_pred ccc
Q 001325 717 RKS 719 (1100)
Q Consensus 717 r~~ 719 (1100)
...
T Consensus 272 ~~s 274 (284)
T KOG1457|consen 272 LLS 274 (284)
T ss_pred eec
Confidence 754
No 55
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4e-07 Score=103.07 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=117.6
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccCCC
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGT 643 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~~gs 643 (1100)
-+++|.|+.-+.++.+|...|..||+|.++.+-+ .++|+||+|.+.++|..|++.|+|+... ++...+.+-+.
T Consensus 168 t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 168 TNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred hhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch
Confidence 4678999999999999999999999999999853 6999999999999999999999999764 22222221100
Q ss_pred ------C-----cccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--cCCCCcccccccCCHHHHHHH
Q 001325 644 ------K-----GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATTA 709 (1100)
Q Consensus 644 ------r-----g~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~--Dlsee~aLLmEF~s~eEA~~A 709 (1100)
+ -.+...---...+|||=++....+.|+|+..+..++.+..+.+ . .....+..+|+|.+.+||..|
T Consensus 248 e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A 327 (369)
T KOG0123|consen 248 EREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKA 327 (369)
T ss_pred hhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHH
Confidence 0 0000000125789999999999999999999998886666544 2 367788899999999999999
Q ss_pred HHHhhhhccc
Q 001325 710 MAHLRQHRKS 719 (1100)
Q Consensus 710 k~~l~~~r~~ 719 (1100)
|..+++...+
T Consensus 328 ~~~~n~~~i~ 337 (369)
T KOG0123|consen 328 MTEMNGRLIG 337 (369)
T ss_pred HHhhChhhhc
Confidence 9999998766
No 56
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=2.5e-07 Score=109.60 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=63.7
Q ss_pred cccccc-ccccceEEeccCCCcccHHHHHHHhhccCCcceEEE---------eccCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 561 PAAMDI-FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF---------FPIKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 561 p~a~dv-~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~---------~~~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
|.+.|+ -+-+.|||||||.+.++|..|...|++||||-+|++ .++|+++||.|.+-.||.+|+++|||.-
T Consensus 164 ~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 164 PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 334444 345889999999999999999999999999999997 3589999999999999999999999987
Q ss_pred ee
Q 001325 631 SW 632 (1100)
Q Consensus 631 ~~ 632 (1100)
+.
T Consensus 244 v~ 245 (877)
T KOG0151|consen 244 VM 245 (877)
T ss_pred ee
Confidence 75
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=3.1e-07 Score=101.70 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=63.4
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEe---c-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 638 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~---~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r 638 (1100)
-|.|+|.||+=.-.|-||+..|++||+|-+|-+. | +|||.||.|+|++||.+|+..|.|+.+- +||+-+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 4889999999999999999999999999999863 4 9999999999999999999999999885 788764
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=1.8e-06 Score=93.64 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=113.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEee
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMD 638 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~------RI~F~r 638 (1100)
-+|||..|+-..|..|||.+|.+||.|-.-++. -.||-+||-|...++|+.|++.|+|+.+- -|+|+.
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 489999999999999999999999998755542 28999999999999999999999999763 789982
Q ss_pred --------------------ccCCC------Cc---------------------ccccccc-------cccceEEEccCC
Q 001325 639 --------------------VGLGT------KG---------------------VINGVAV-------GSCFHVYVGNIP 664 (1100)
Q Consensus 639 --------------------~~~gs------rg---------------------~~~Gva~-------~~Sr~LwVG~Is 664 (1100)
...|. |+ -|.|.++ +.---|+|=+.+
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 10010 11 1333222 124458888999
Q ss_pred CcchhHHHHHhhhcccccCCcee-ecCC---CCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 665 NQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 665 s~~~kEELfsE~dkag~kgPv~f-~Dls---ee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+...+--|..=|.-|+....+.+ .|+. .++.-++-.-+-+||.-|+..|++.|.|
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg 346 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG 346 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc
Confidence 88766655555555555666655 3655 5677888889999999999999999988
No 59
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.31 E-value=2.6e-07 Score=111.71 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=120.7
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
|=+-+++.|++|||...+++.+|+..|+.||.++.|-|-. .--||||.|.+..-|..|+-.|.|..|. ||.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 4466899999999999999999999999999999999865 3569999999999999999999998876 444
Q ss_pred EeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCC-CCcccccccCCHHHHHHHHHHhh
Q 001325 636 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 636 F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dls-ee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+... .++++..+|||+..+-.....|..||+- +|++..+|+. .+-.+++.|++.+.|..|+++|+
T Consensus 447 lG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~---fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDR---FGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cccc-----------ccccceeeccCCCCCCChHHHHHHHhhc---cCcceeeecccCCcceeeecccCccchhhHHHHh
Confidence 3321 2678999999999999999999999995 6666555543 35678899999999999999999
Q ss_pred hhccc
Q 001325 715 QHRKS 719 (1100)
Q Consensus 715 ~~r~~ 719 (1100)
+.-+|
T Consensus 513 gap~G 517 (975)
T KOG0112|consen 513 GAPLG 517 (975)
T ss_pred cCcCC
Confidence 98777
No 60
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=9.2e-07 Score=103.02 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVK 635 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~ 635 (1100)
.+++.|||=||++.|++++|+.+|+.||+|..|+..+ .+|-.||+|-|++||++|.++|++..+. ||+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4689999999999999999999999999999999888 9999999999999999999999999886 777
No 61
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=5.9e-06 Score=96.31 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=118.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.+|+|++|+.+++.++|++.|+.+|||..-.+. ..|||+||-|--.+|+.+|...+.++.+. +++++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999965553 37999999999999999999999997653 67777321
Q ss_pred -----------------CCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee---ecCCCCccccccc
Q 001325 641 -----------------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV---TDLSCEGALLMEF 700 (1100)
Q Consensus 641 -----------------~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f---~Dlsee~aLLmEF 700 (1100)
++++...---...+--.|.|-+.|=+..+++|..=|..+|.+..+.+ .|..--+.++|.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 11110000001123557999999999999999999999997777755 2444448999999
Q ss_pred CCHHHHHHHHHHhhhhccc
Q 001325 701 RTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 701 ~s~eEA~~Ak~~l~~~r~~ 719 (1100)
-...||..|+..++++...
T Consensus 166 k~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKID 184 (678)
T ss_pred eeHHHHHHHHHhccCceec
Confidence 9999999999999998765
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=1.7e-06 Score=94.04 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=59.5
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
..|+||||-|...-+|+|++.+|..||.||.+++.+ +||+|||-|..-.||-.|++.|.|+..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqT 85 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQT 85 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccccc
Confidence 569999999999999999999999999999999975 799999999999999999999999864
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=98.17 E-value=3.9e-06 Score=73.29 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHHhh----ccCCcceEE-E-e-------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 584 EAHIRFQID----RFGPLEHFF-F-F-------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 584 e~dL~~~F~----~fGpLe~V~-~-~-------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
++||++.|+ +||.|.+|. + . ..||||||.|.+.+||.+|++.|+|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999985 3 2 15999999999999999999999998654
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.14 E-value=3.5e-06 Score=94.10 Aligned_cols=64 Identities=27% Similarity=0.383 Sum_probs=59.6
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
....||||+|.+.++|.||+..|.+||+|+++.+...+++|||+|..-+-|+.|.+.+-.+.+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 3679999999999999999999999999999999999999999999999999999988776554
No 65
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.13 E-value=7.8e-06 Score=95.39 Aligned_cols=148 Identities=24% Similarity=0.346 Sum_probs=101.3
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEe---
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM--- 637 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~--- 637 (1100)
|-+.||||||-.+.+|++|+..|+.||+|+.|-.-. .+||+||+|.+.+||+.|.+.|+|.-+- -|++.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 333499999999999999999999999999998743 6999999999999999999999995332 23332
Q ss_pred -------------e------cc--CCCCcc-------cccccc--------------c-ccceEE-----Ecc-------
Q 001325 638 -------------D------VG--LGTKGV-------INGVAV--------------G-SCFHVY-----VGN------- 662 (1100)
Q Consensus 638 -------------r------~~--~gsrg~-------~~Gva~--------------~-~Sr~Lw-----VG~------- 662 (1100)
| .| +|+.|. +-|... + ....+. |.+
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 1 11 122220 111110 0 111111 112
Q ss_pred ----CCC--------------------cchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 663 ----IPN--------------------QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 663 ----Iss--------------------~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
|++ +-++|++..|..+.++.-- .++|-.+.+.++|-|.+.++|..|...|+|.=
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~h-i~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCH-IFVDKNSAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeE-EEEccCCCceEEEecCcHHHHHHHHHHHhhhh
Confidence 111 2367889999975443322 44677777999999999999999999998843
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.06 E-value=4e-06 Score=93.40 Aligned_cols=132 Identities=14% Similarity=0.200 Sum_probs=99.8
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHh----hcCCcee------
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREY----IRNHFSW------ 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~----LqG~~~~------ 632 (1100)
.+++|+||.|..+++++.|++.|..||.+....+. +.|||.||.|.+.+--.+++.. |+|+.+=
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 68999999999999999999999999999877664 4899999999976655544433 5665432
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCcccccccCCHHHHHH
Q 001325 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATT 708 (1100)
Q Consensus 633 RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~---Dlsee~aLLmEF~s~eEA~~ 708 (1100)
|-+..+. .+ -...+.++||+||..+..+++...|..+++...+.+ . ....++.-+|.|++.+.+..
T Consensus 85 r~~~~~~---~~-------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQTKV---GR-------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccccc---cc-------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 2221111 00 115789999999999999999999999886555533 2 36678888999999887776
Q ss_pred HH
Q 001325 709 AM 710 (1100)
Q Consensus 709 Ak 710 (1100)
+.
T Consensus 155 v~ 156 (311)
T KOG4205|consen 155 VT 156 (311)
T ss_pred ec
Confidence 63
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=6.7e-06 Score=88.26 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=51.1
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR 627 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~Lq 627 (1100)
-++|||+|.=...+++|+.-|++||+|....+. ++|||+||-|+|.+-|.+|++..+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 379999999999999999999999999976653 599999999999999999987643
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.01 E-value=6.4e-06 Score=90.58 Aligned_cols=63 Identities=24% Similarity=0.407 Sum_probs=57.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
++|-+|.||||.+.-+..||++.|++||++-+-.+. |+||||.|...+||.+|++.|+|+.+-
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccc
Confidence 467799999999999999999999999998876664 689999999999999999999998653
No 69
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.00 E-value=1e-05 Score=93.63 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=58.5
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+.+|||||+.+++|++|..+|+..|+|-++++. ..|||||++|.+.++|..|++.|+|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999999999985 38999999999999999999999998654
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.80 E-value=3e-05 Score=78.04 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=58.5
Q ss_pred EEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 573 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 573 LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
|+|-++-..++|+||...|.-||+|.++-+- -.+|||+|||+...+|-.|+++|+|..+. .|+|.
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 6899999999999999999999999999862 18999999999999999999999998765 56665
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.79 E-value=0.00014 Score=83.12 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=114.7
Q ss_pred cceEEeccCCCc-ccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee---cc
Q 001325 570 SKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD---VG 640 (1100)
Q Consensus 570 Sr~LWVGnLg~~-vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r---~~ 640 (1100)
.+-|-|-||-.. ||.+-|--+|+-||.+-.|.++. .+--|+|.|-|...|.-|++.|+|..+| ||.|.+ .+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 688999999877 99999999999999999999876 6789999999999999999999999987 454442 12
Q ss_pred C-------------------------CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCC-CCc
Q 001325 641 L-------------------------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEG 694 (1100)
Q Consensus 641 ~-------------------------gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dls-ee~ 694 (1100)
+ |+|-+-++ --+|..|-.-+||+.++.|++..=+...+..+- .|.++. ++.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni--~PpsatlHlsnip~svsee~lk~~f~~~g~~vk-afkff~kd~k 453 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI--FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVK-AFKFFQKDRK 453 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCccccccccc--CCchhheeeccCCcccchhHHHHhhhcCCceEE-eeeecCCCcc
Confidence 2 22222221 136888999999999999999887776442211 444444 779
Q ss_pred ccccccCCHHHHHHHHHHhhhhccc
Q 001325 695 ALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 695 aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+|+++++.|||..|.--+..+-.|
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lg 478 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLG 478 (492)
T ss_pred eeecccCChhHhhhhccccccccCC
Confidence 9999999999999998777666655
No 72
>PHA03247 large tegument protein UL36; Provisional
Probab=97.75 E-value=0.00039 Score=91.92 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=13.1
Q ss_pred ccccccchh-hhhhhhhhhhhhccCCC
Q 001325 169 SSVIRGICS-AVFHNVLDFFISSFDGK 194 (1100)
Q Consensus 169 s~v~~gics-av~~~vltffi~~f~gk 194 (1100)
..||-|+|+ +.|.+.=.=|+..++-|
T Consensus 1762 ~~~V~~Lrad~~Y~RLPak~~g~i~aK 1788 (3151)
T PHA03247 1762 TNTVLGLRADAHYERLPAKYQGALGAK 1788 (3151)
T ss_pred HHHHHhhhcchhhccCCHHHhchhhHH
Confidence 345556665 34555544455544443
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.71 E-value=8.2e-05 Score=89.12 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=106.7
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCC----
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG---- 642 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~g---- 642 (1100)
.-+.||||+-++..++|...|.+||+|..|.+-+.-.-|+|+|.+..||..|.+.|.++... +.+-++.++-
T Consensus 386 ~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~p 465 (725)
T KOG0110|consen 386 TVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDP 465 (725)
T ss_pred ceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCc
Confidence 45789999999999999999999999999955434445999999999999999999998653 2222211100
Q ss_pred ----------CC-------------c------------ccccccc---cccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001325 643 ----------TK-------------G------------VINGVAV---GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 684 (1100)
Q Consensus 643 ----------sr-------------g------------~~~Gva~---~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgP 684 (1100)
.. | .+.-++. +.++ |||-+..=..+.|.++..|++.|..--
T Consensus 466 ka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS 544 (725)
T KOG0110|consen 466 KADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLS 544 (725)
T ss_pred cccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEE
Confidence 00 0 0000001 1233 999999999999999999998774333
Q ss_pred ceee---c----CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 685 YMVT---D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 685 v~f~---D----lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.+. + .-+-+..+|||+++++|.+|++.|++.+.-
T Consensus 545 ~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 545 IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec
Confidence 3221 1 112388999999999999999999976544
No 74
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=7.3e-05 Score=87.72 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=70.2
Q ss_pred ccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 557 ~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
++..+++-+|---.++++||+|+...+++.++++.+-||+|..|.++. ++||||-||.+.-..-.|+..|+|..
T Consensus 276 ~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 276 VGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred cCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 477888888888899999999999999999999999999999999753 78999999999999999999999998
Q ss_pred ee
Q 001325 631 SW 632 (1100)
Q Consensus 631 ~~ 632 (1100)
++
T Consensus 356 lg 357 (500)
T KOG0120|consen 356 LG 357 (500)
T ss_pred hc
Confidence 76
No 75
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.69 E-value=3.3e-05 Score=90.34 Aligned_cols=142 Identities=17% Similarity=0.166 Sum_probs=109.8
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCceeEEEEee--cc-
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMD--VG- 640 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~r--~~- 640 (1100)
.+.+++=-|...+++-||++.|+.+|++++|.+. +.+|-|||+|-|.+--..|+ +|.|+++.-+..+. +.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 3556666778889999999999999999999974 48999999999876655565 99999876333331 11
Q ss_pred -----------CCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHH
Q 001325 641 -----------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEE 705 (1100)
Q Consensus 641 -----------~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eE 705 (1100)
++.+|+ +++-+.||||++....+.+.|..-|..|+.+.-+.. .| ...++.-+++|.+.++
T Consensus 258 eknr~a~~s~a~~~k~~-----~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 258 EKNRAANASPALQGKGF-----TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHhcccccccccc-----ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 121211 224333999999999999999999998887777644 23 5678899999999999
Q ss_pred HHHHHHHhhhhc
Q 001325 706 ATTAMAHLRQHR 717 (1100)
Q Consensus 706 A~~Ak~~l~~~r 717 (1100)
|..|...|++.-
T Consensus 333 ar~a~e~lngfe 344 (549)
T KOG0147|consen 333 ARKALEQLNGFE 344 (549)
T ss_pred HHHHHHHhccce
Confidence 999999999943
No 76
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.61 E-value=9.2e-06 Score=84.79 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=60.4
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.+-|--+|||+|+-+.||.||-.+|+.||.|.+|-+.| ++||||.-|+|-+--|-|++.|+|-.+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~ 103 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL 103 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec
Confidence 45566799999999999999999999999999999865 7899999999999999999999998765
No 77
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.48 E-value=0.00043 Score=79.24 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=109.6
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCce-EEEEecCHHHHHHHHHhhcCCcee------EEEEee-----
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFSW------RVKFMD----- 638 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgf-AFVeF~~i~DAv~A~~~LqG~~~~------RI~F~r----- 638 (1100)
...|+|+-.-||=+=|-.+|++||.+..+..|. .-+| |+|.|.|..-|-.|+-+|+|..+. ||.|.-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 457899999999999999999999999988775 6777 999999999999999999999874 888871
Q ss_pred -------------cc--CC----------------------CCccccc-----ccc-----cc--cceEEEccCCCc-ch
Q 001325 639 -------------VG--LG----------------------TKGVING-----VAV-----GS--CFHVYVGNIPNQ-WA 668 (1100)
Q Consensus 639 -------------~~--~g----------------------srg~~~G-----va~-----~~--Sr~LwVG~Iss~-~~ 668 (1100)
+. .| +-+.+.+ .++ .+ ++.|.|-+.-.. ++
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 11 12 0011110 111 12 467777776665 67
Q ss_pred hHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 669 KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 669 kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.|-||.=|..+|..-.+++ ...-..-+|+++.....|.-||.||++++.=
T Consensus 312 ~d~LftlFgvYGdVqRVki-l~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~ 361 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQRVKI-LYNKKDNALIQMSDGQQAQLAMEHLEGHKLY 361 (492)
T ss_pred hhHHHHHHhhhcceEEEEe-eecCCcceeeeecchhHHHHHHHHhhcceec
Confidence 7778877776555444444 3344577899999999999999999998854
No 78
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.48 E-value=0.0062 Score=74.31 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=49.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
-|+.||||+|+-.+..++|-+=|+.||.+.- ++-+..+.+++|--.+-+||..|+..|+-..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqS--i~li~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQS--IILIPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhccccee--EeeccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 5999999999999999988887775444433 3346678889999999999999999998543
No 79
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.001 Score=78.35 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=111.1
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
+-=.|.|-||+=...+.||.-+|++||.+..|.+-+ =.|||||.|.+.-||..|++.|+|+.+. -|+|+=.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 355799999999999999999999999999999842 3599999999999999999999999764 4566510
Q ss_pred c-----------------------------CCCCcc-------------ccc-------------------------ccc
Q 001325 640 G-----------------------------LGTKGV-------------ING-------------------------VAV 652 (1100)
Q Consensus 640 ~-----------------------------~gsrg~-------------~~G-------------------------va~ 652 (1100)
. -|-.+. .+| ...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 0 000000 111 000
Q ss_pred --------------cccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCcccccccCCHHHHHHHHHHh
Q 001325 653 --------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHL 713 (1100)
Q Consensus 653 --------------~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~---Dlsee~aLLmEF~s~eEA~~Ak~~l 713 (1100)
+.-+.|+|-++|=..++|||-.+|.+||.+.=..+ + ...+++.+++-|.++.+|..+....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 11378999999999999999999998885544432 2 2567899999999999999988766
No 80
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.45 E-value=0.00022 Score=75.76 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=61.7
Q ss_pred cceEEeccCCCcccHHHHHHHhhcc-CCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRF-GPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~f-GpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
..-+||+.++.+.-|.++...|..| |.+..|+..| ++|||||||++.+.|.-|-+.|++=.+. ...||-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4458999999999999999999999 8898888854 7899999999999999999999997554 677776
Q ss_pred cc
Q 001325 639 VG 640 (1100)
Q Consensus 639 ~~ 640 (1100)
++
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 63
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.41 E-value=0.0001 Score=79.15 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=57.0
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
..+|-+|||.||+++++|++|+.+|.+|--..-+++.. +---|||+|++|+.|-+||.-|||..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46789999999999999999999999998877777643 444799999999999999999999754
No 82
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.36 E-value=0.00039 Score=78.85 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=99.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--------------E
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------------R 633 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--------------R 633 (1100)
.+|--+-|-+|-.+|+|+||.+..+.||+|--|+.-+-+--|+|||+||+-|+.++..---..+. +
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~ 108 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQC 108 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhh
Confidence 34556789999999999999999999999999999998889999999999999987654333322 2
Q ss_pred EEEeeccCCCCcccccccccccceEEEccCCCc--chhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHH
Q 001325 634 VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ--WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMA 711 (1100)
Q Consensus 634 I~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~--~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~ 711 (1100)
|+-+ | --..++++.|.+-=+-++ ++.|-|-.-....++.-.+- +.-...=.+++||++++-|.+||+
T Consensus 109 i~R~--g--------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv-IfkkngVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 109 IERP--G--------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV-IFKKNGVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred hccC--C--------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE-EEeccceeeEEeechhHHHHHHHh
Confidence 2211 1 112346777777666665 45555555555444433332 222234578999999999999999
Q ss_pred Hhhhhc
Q 001325 712 HLRQHR 717 (1100)
Q Consensus 712 ~l~~~r 717 (1100)
.|++--
T Consensus 178 alNGAD 183 (494)
T KOG1456|consen 178 ALNGAD 183 (494)
T ss_pred hccccc
Confidence 999854
No 83
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.30 E-value=0.00022 Score=59.57 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=52.4
Q ss_pred EEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 658 VYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 658 LwVG~Iss~~~kEELfsE~dkag~kgPv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
||||++|..+++++|..-|..++....+.+. .....+.++++|.+.+||..|++.++++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 7999999999999999999988866555442 2456788899999999999999999997654
No 84
>PHA03247 large tegument protein UL36; Provisional
Probab=97.30 E-value=0.0022 Score=85.27 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=12.2
Q ss_pred hHHHHHhHHHHHHhcCchHHHHHHHHhhC
Q 001325 232 LSKFRLLSLLQIFFSSPKNLLAACFELFN 260 (1100)
Q Consensus 232 l~~~~~l~ll~if~~~p~~~l~acf~l~~ 260 (1100)
++-++.|..+-.+.+-=++..++=|.+|.
T Consensus 1994 vaA~~vl~eI~~LRl~~~~A~~~gF~~F~ 2022 (3151)
T PHA03247 1994 LAAMCTVPLITRLQLALSDAQGAGFRLFG 2022 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 33333333333333333444444455553
No 85
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00031 Score=79.28 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=73.4
Q ss_pred eeeccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhc
Q 001325 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIR 627 (1100)
Q Consensus 554 ~~~~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~Lq 627 (1100)
+.-.=||----||.+|-|-|||-.|-|-.+.+||+-+|++||+|.+--+.+. --||||||+|-++.++|.=-|+
T Consensus 223 iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd 302 (479)
T KOG0415|consen 223 ILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD 302 (479)
T ss_pred HHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc
Confidence 3345577777899999999999999999999999999999999998877653 4699999999999999999999
Q ss_pred CCcee----EEEEeec
Q 001325 628 NHFSW----RVKFMDV 639 (1100)
Q Consensus 628 G~~~~----RI~F~r~ 639 (1100)
+-.+- .|.|.++
T Consensus 303 NvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 303 NVLIDDRRIHVDFSQS 318 (479)
T ss_pred ceeeccceEEeehhhh
Confidence 96553 5666654
No 86
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.23 E-value=0.00041 Score=72.84 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=58.8
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceE---EE----eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHF---FF----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V---~~----~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
+-+|+||||.+.+.|.-|-..|+.||.|-+- .- -.++|||||+|.+.+-+.+|++.|+|+.++ ++.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 3789999999999999999999999999762 11 137899999999999999999999999887 55555
No 87
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.07 E-value=0.00052 Score=79.54 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=49.2
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cC--ceEEEEecCHHHHHHHHHhh
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IK--GFALVEYINIIDAIRAREYI 626 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~r--gfAFVeF~~i~DAv~A~~~L 626 (1100)
..|||+||+.++++++|++.|..||+|....|.. .+ .||||+|++-..+..|+++=
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 3399999999999999999999999999887753 22 89999999999999988764
No 88
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.95 E-value=0.00074 Score=72.84 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=55.8
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.+.+||||+.-.+|.++++..|+-||.|..|.+- .++|||||+|.+.+.++.|.+ |+|..+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 5789999999999999999999999999877652 379999999999999999999 9998654
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.95 E-value=0.00095 Score=56.94 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=47.2
Q ss_pred EEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 658 VYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 658 LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
|||+|||+.++.++|...+..++.+..+.+. + ...++.+++||.++++|.+|+...+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 7999999999999999999998766555442 1 234789999999999999999998744
No 90
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.92 E-value=0.0012 Score=65.97 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=58.7
Q ss_pred cccccccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 647 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 647 ~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.|-+-..++.||||+++...+.|+|...|.+++.+..+.+ .+ ...++..+|+|++.++|..|++.|+++...
T Consensus 26 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 26 MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred ccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 33333446889999999999999999999998876666644 23 345789999999999999999999887644
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.88 E-value=0.0011 Score=72.38 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=54.0
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcc------eEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLE------HFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe------~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.=.++-|.||++|+.+.|...|.+|=.-- +=+.-..+||.||-|+|+.|+++|++.|+|+-++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 45789999999999999999999996543 3333448999999999999999999999998765
No 92
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.80 E-value=0.016 Score=68.13 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=38.1
Q ss_pred HHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCC
Q 001325 584 EAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH 629 (1100)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~ 629 (1100)
|.||-..|+++-+=.-|..|- +.++|=.+|.|++||..=++.++-+
T Consensus 92 dqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHHH
Confidence 788999999999765555555 8899999999999998888777764
No 93
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.80 E-value=0.0073 Score=70.03 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=112.8
Q ss_pred cCCccccccccccceEEeccCCCcccHHHHHHHhh-ccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 558 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 558 ~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~-~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
+|.++|.| |.+||-||+-++.=.||..+|. +-|.|+-|-++ .+||+|.|||++.+-+..|.+-|+-..+
T Consensus 37 ~gn~~~r~-----R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 37 GGNVAARD-----RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred CCCccccc-----ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 55566665 6699999999999999999995 67899877753 3899999999999999999999886543
Q ss_pred e-------------EEEEeecc-CCCCcc------------------cccccc---------------------------
Q 001325 632 W-------------RVKFMDVG-LGTKGV------------------INGVAV--------------------------- 652 (1100)
Q Consensus 632 ~-------------RI~F~r~~-~gsrg~------------------~~Gva~--------------------------- 652 (1100)
- |-+++|.. .|..++ +.|+-+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~ 191 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNS 191 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccc
Confidence 2 22222211 011000 111111
Q ss_pred ---------------------cccceEEEccCCCcchhHHHHHhhhcccccCCcee-e--cCCCCcccccccCCHHHHHH
Q 001325 653 ---------------------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T--DLSCEGALLMEFRTPEEATT 708 (1100)
Q Consensus 653 ---------------------~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~--Dlsee~aLLmEF~s~eEA~~ 708 (1100)
-.+..++|++|-=.+-.+.|..=|.-+++..-+.| + ..-+++...+||.++-||-+
T Consensus 192 ~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavq 271 (608)
T KOG4212|consen 192 SNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQ 271 (608)
T ss_pred hhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHH
Confidence 01566789999888888888888888887777766 2 25677888999999999999
Q ss_pred HHHHhhhhc
Q 001325 709 AMAHLRQHR 717 (1100)
Q Consensus 709 Ak~~l~~~r 717 (1100)
|..-+.++-
T Consensus 272 aIsml~~~g 280 (608)
T KOG4212|consen 272 AISMLDRQG 280 (608)
T ss_pred HHHhhccCC
Confidence 988887644
No 94
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.77 E-value=0.0011 Score=81.44 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=68.5
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEee
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMD 638 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~------RI~F~r 638 (1100)
-.+++..||||.|++-..-.-|..+|.+||+|+.|.......||+|.|++..-|..|++.|.|..++ ||.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4578999999999999999999999999999999999889999999999999999999999999876 788884
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.0014 Score=68.51 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=54.1
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.+.||||+.++...|.||+.+|.+++.+-.+= +....-+.++|||+.+.||.-|..+|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvW-vArnPPGfAFVEFed~RDA~DAvr~LDG~~~ 72 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVW-VARNPPGFAFVEFEDPRDAEDAVRYLDGKDI 72 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEE-EeecCCCceEEeccCcccHHHHHhhcCCccc
Confidence 67899999999999999999999877444432 3457789999999999999999999999874
No 96
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.55 E-value=0.0068 Score=73.99 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=9.5
Q ss_pred ccchhhHHHHhhccC
Q 001325 1056 TKRTDFRHVKSTFTS 1070 (1100)
Q Consensus 1056 TlRtDfq~LealFss 1070 (1100)
+...|++.+++.|..
T Consensus 398 l~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 398 LEALDFSRFEEQFKI 412 (830)
T ss_pred HHhhhHHHHHHHHHh
Confidence 334577777777764
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.074 Score=63.06 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=100.3
Q ss_pred eeeccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEE--------eccCc---eEEEEecCHHH---H
Q 001325 554 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--------FPIKG---FALVEYINIID---A 619 (1100)
Q Consensus 554 ~~~~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~--------~~~rg---fAFVeF~~i~D---A 619 (1100)
.|..-.-+---..-.-|++++||.|+.+++|+.|-.-|.+||++--=|= ++++| |+|..|++.+- -
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 3444444444444456899999999999999999999999999865553 56888 99999997653 3
Q ss_pred HHHHHhhcCCcee-----EEEEeeccC------CCCccccc-ccccccceEEEccCCCcchhHHHHHhhhcccccCCcee
Q 001325 620 IRAREYIRNHFSW-----RVKFMDVGL------GTKGVING-VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV 687 (1100)
Q Consensus 620 v~A~~~LqG~~~~-----RI~F~r~~~------gsrg~~~G-va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f 687 (1100)
+.|+..=.++-.. +|+=..+++ -+-..+++ ...-+.|.++||+++--..-|||-.-|+- .+|.+-.
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~--lyGgV~y 400 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED--LFGGVLY 400 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHH--hcCceEE
Confidence 4444442222211 111111110 00000110 11347999999999999999999999986 7777744
Q ss_pred --ecCC-----CCcccccccCCHHHHHHH
Q 001325 688 --TDLS-----CEGALLMEFRTPEEATTA 709 (1100)
Q Consensus 688 --~Dls-----ee~aLLmEF~s~eEA~~A 709 (1100)
+|.. ..+|.-|-|.+...=.+|
T Consensus 401 aGIDtD~k~KYPkGaGRVtFsnqqsYi~A 429 (520)
T KOG0129|consen 401 VGIDTDPKLKYPKGAGRVTFSNQQAYIKA 429 (520)
T ss_pred EEeccCcccCCCCCcceeeecccHHHHHH
Confidence 3333 457888888887654444
No 98
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.53 E-value=0.017 Score=65.54 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=110.8
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcc--------eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe--------~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
-.++||-+|+.++|-+++.++|.+||=|- .|.+|+ -+|=|++-|-..+--.-|++.|++.-+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 34699999999999999999999999874 256775 5789999999999999999999998765
Q ss_pred EEEEeeccCCCCccccc-----------------------------ccccccceEEEccCCCc-----------chhHHH
Q 001325 633 RVKFMDVGLGTKGVING-----------------------------VAVGSCFHVYVGNIPNQ-----------WAKDEI 672 (1100)
Q Consensus 633 RI~F~r~~~gsrg~~~G-----------------------------va~~~Sr~LwVG~Iss~-----------~~kEEL 672 (1100)
||+-++-+......+.| ......+.|-+-++=.. -.+|+|
T Consensus 214 rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl 293 (382)
T KOG1548|consen 214 RVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDL 293 (382)
T ss_pred EEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHH
Confidence 55555433221111111 11224566777766442 246777
Q ss_pred HHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 673 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 673 fsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
..|..++|.+.-+.+-+-...+.+.|-|.+.+||..+...|+|+-
T Consensus 294 ~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 294 TEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 788887776666666666788899999999999999999999865
No 99
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=96.48 E-value=0.0027 Score=69.90 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=61.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee--EEEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKF 636 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F 636 (1100)
+..|||||=.|+..-.+.||-..|..||-|.+-++|- +|-|.||-|.|+.-|-.|+.+|+|.-++ |+++
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3589999999999999999999999999999877752 7789999999999999999999998876 5543
No 100
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.46 E-value=0.0044 Score=67.69 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=54.5
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCC
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNH 629 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~ 629 (1100)
-.|+|.||...|+++||+++|+.||.+..+.+.. +.|.|-|.|..-+||++|++-++|.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv 147 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGV 147 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCc
Confidence 4699999999999999999999999999998842 6699999999999999999999994
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.42 E-value=0.0048 Score=73.01 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=115.6
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhcc-----------C-CcceEEEeccCceEEEEecCHHHHHHHHHhhcC-----
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRF-----------G-PLEHFFFFPIKGFALVEYINIIDAIRAREYIRN----- 628 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~f-----------G-pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG----- 628 (1100)
.--..+++|||++...++|...+..|..= | ++.+|.+-..++|||++|+.+.+|.+|+. ++|
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 33447899999999999999999888754 2 36677777799999999999999999863 444
Q ss_pred CceeEEEEeecc-----------CCCCccccccccc--ccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CC
Q 001325 629 HFSWRVKFMDVG-----------LGTKGVINGVAVG--SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LS 691 (1100)
Q Consensus 629 ~~~~RI~F~r~~-----------~gsrg~~~Gva~~--~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---ls 691 (1100)
..++-++=.+-+ +|..+..-+-.++ ..+.++||+++-...++++..-.+.++.+..+.. ++ .-
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 444311111111 1122222222222 4778999999999999999999998887777744 33 45
Q ss_pred CCcccccccCCHHHHHHHHHHhhhhccccCCC
Q 001325 692 CEGALLMEFRTPEEATTAMAHLRQHRKSRSNY 723 (1100)
Q Consensus 692 ee~aLLmEF~s~eEA~~Ak~~l~~~r~~rs~~ 723 (1100)
..+.++.||-++--+..|.++|++...|.++-
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 68889999999999999999999999994443
No 102
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.40 E-value=0.002 Score=74.15 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=103.4
Q ss_pred ceEEeccCCCcccHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee---EEEEeeccCCCCc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGLGTKG 645 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~f--GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~---RI~F~r~~~gsrg 645 (1100)
++||+|||++.++.+||+.+|+-- |-=-.|.+ --|||||++-|-.-|.+|.+.+.|+.-. |++.-.+-...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk-- 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK-- 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH--
Confidence 579999999999999999999754 22223444 3499999999999999999999998533 55544220000
Q ss_pred ccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccc-cccCCHHHHHHHHHHhhhhccc
Q 001325 646 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALL-MEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 646 ~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLL-mEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
--||.+-|-+|+++..-|=|-.=....+....++.+....+.+.. +.|.+.+.+..|+.++++.-.+
T Consensus 78 -------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 78 -------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred -------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 138889999999987666555555555566666666666676665 8999999999999999997665
No 103
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.36 E-value=0.0017 Score=69.99 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=58.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
..-++|||||+...|+|+.|+++|-.=||+..|.+-. ...||||+|++.-----|++.|+|-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 4568999999999999999999999999999999843 4459999999999999999999998865
No 104
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.0069 Score=68.96 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=55.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
+.-+.+||.++-+|.+|+||...|+-||+|..-..++ -|||.|+||.|..---+|+-.|+-..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc
Confidence 4568999999999999999999999999999888864 589999999998877777777765443
No 105
>smart00362 RRM_2 RNA recognition motif.
Probab=96.20 E-value=0.008 Score=48.75 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=47.4
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceeec--CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.|||++++..++.++|.+-+..++....+.+.. ....+..+++|.+.++|.+|...++++.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~ 63 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTK 63 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcE
Confidence 389999999999999999998766444333221 1234889999999999999998888654
No 106
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.10 E-value=0.019 Score=55.10 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=55.0
Q ss_pred eEEeccCCCcccHHHHHHHhhcc--CCcceEEE------eccCceEEEEecCHHHHHHHHHhhcCCc--------eeEEE
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRF--GPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHF--------SWRVK 635 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~f--GpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~LqG~~--------~~RI~ 635 (1100)
+|-|-||++.-|.++|.+++... |..|=|.+ -...|||||+|.+.++|..-.+.++|+. +|.|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 57789999999999999988765 33332222 2379999999999999999999999984 45788
Q ss_pred Eeecc
Q 001325 636 FMDVG 640 (1100)
Q Consensus 636 F~r~~ 640 (1100)
+|+.|
T Consensus 83 yAriQ 87 (97)
T PF04059_consen 83 YARIQ 87 (97)
T ss_pred hhHhh
Confidence 88774
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.06 E-value=0.013 Score=63.27 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=65.1
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~-----RI~F~ 637 (1100)
-..+.+-|++-||+..++...|+.+|+.|.-.+.|++.+ -++.|||+|.+...|-.|+..|||.++- +|.|+
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 357889999999999999999999999999999999887 8899999999999999999999998764 55554
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.97 E-value=0.075 Score=62.75 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=95.5
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHH---hhcCCceeEE--------EE
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRARE---YIRNHFSWRV--------KF 636 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~---~LqG~~~~RI--------~F 636 (1100)
.|=+-.|+=++|++||+..|+-++ |++|.+.+ ..|=|||||.+.+|+..|++ ...|++-..| ++
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 455677889999999999999986 88888865 68999999999999999986 4455543311 11
Q ss_pred -eeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCce-e-e--cCCCCcccccccCCHHHHHHHHH
Q 001325 637 -MDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-V-T--DLSCEGALLMEFRTPEEATTAMA 711 (1100)
Q Consensus 637 -~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~-f-~--Dlsee~aLLmEF~s~eEA~~Ak~ 711 (1100)
+++ .|-++ ....-.|-+=++|=..+++||+.-|.-.-.+..-. + . -......+++.|++.|.|.+||.
T Consensus 91 ~~~~-~g~~s------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 91 VMRP-GGPNS------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred cccC-CCCCC------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 122 11111 12345677888999999999988776433222211 1 1 25567889999999999999987
Q ss_pred Hhhh
Q 001325 712 HLRQ 715 (1100)
Q Consensus 712 ~l~~ 715 (1100)
..+.
T Consensus 164 rhre 167 (510)
T KOG4211|consen 164 RHRE 167 (510)
T ss_pred HHHH
Confidence 6554
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.89 E-value=0.1 Score=60.17 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=111.5
Q ss_pred ccceEEeccCCCc-ccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc----
Q 001325 569 ASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG---- 640 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~-vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~---- 640 (1100)
+++-+-|-.|-.+ ..-+.|.-+|=-||-|+.|.|.+ -.|.|.||-.|...-++|+.-|+|..+. ++.|.-+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 4566777777776 44566888999999999999987 8899999999999999999999999886 66666322
Q ss_pred ------------------CCCC---ccccccccc-----ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCC---
Q 001325 641 ------------------LGTK---GVINGVAVG-----SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS--- 691 (1100)
Q Consensus 641 ------------------~gsr---g~~~Gva~~-----~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dls--- 691 (1100)
.++| =..-+-|++ +|+.|--=+.|..++.|+|+.-+..-.-. ++.+..|.
T Consensus 366 ~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svkvFp~ks 444 (494)
T KOG1456|consen 366 SPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVKVFPLKS 444 (494)
T ss_pred ccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEEeecccc
Confidence 1111 112223333 79999999999999999998887764433 55543322
Q ss_pred CC-cccccccCCHHHHHHHHHHhhhhccc
Q 001325 692 CE-GALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 692 ee-~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
++ .+=|+||++.++|..|+.-++..-.+
T Consensus 445 erSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 445 ERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred cccccceeeeehHHHHHHHHHHhcccccc
Confidence 22 23479999999999999999876644
No 110
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=95.80 E-value=0.0082 Score=60.64 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=52.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..|+.|||||+|=.++.|+|-.=|.+.|.+..+.+ .| .+.=+.-++||++.+||..|+++|++.|..
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 36999999999999999998887776664433322 12 233356789999999999999999999877
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=95.67 E-value=0.018 Score=46.93 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.3
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceeecC---CCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dl---see~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.|+|++++...+.++|...+..++....+.+..- ...+..+++|.+.++|..|+..+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 3899999999999999999998654444433221 126789999999999999999988864
No 112
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.47 E-value=0.56 Score=55.04 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=7.8
Q ss_pred cccccccCCCCC
Q 001325 830 MPEAGFRKIDGH 841 (1100)
Q Consensus 830 ~pe~g~~~~dg~ 841 (1100)
.++|-+...||.
T Consensus 234 ~p~~~~~~~dgs 245 (518)
T KOG1830|consen 234 RPEYQSEQADGS 245 (518)
T ss_pred Cccccccccccc
Confidence 457766777764
No 113
>smart00360 RRM RNA recognition motif.
Probab=95.42 E-value=0.018 Score=46.36 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=46.4
Q ss_pred EccCCCcchhHHHHHhhhcccccCCceeec----CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 660 VGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 660 VG~Iss~~~kEELfsE~dkag~kgPv~f~D----lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
|++++..++.++|..-+..++....+.+.. ....+.++++|.+.++|.+|+..+++...
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 688999999999999999877555554432 22356899999999999999998886543
No 114
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.41 E-value=0.01 Score=66.80 Aligned_cols=59 Identities=17% Similarity=0.429 Sum_probs=47.5
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEE------eccCceEEEEecCHHHHHHHHHhhcC
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRN 628 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~------~~~rgfAFVeF~~i~DAv~A~~~LqG 628 (1100)
.+++++||.|+.+++|.|++..|++||.|..+.+ -+.|||+||.|.+. |+++-+-...-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e-~sVdkv~~~~f 160 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSE-DSVDKVTLQKF 160 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccc-cccceecccce
Confidence 7899999999999999999999999998886665 25999999999865 44444333333
No 115
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.11 E-value=0.064 Score=65.97 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=4.9
Q ss_pred CCCCCCCCCccc
Q 001325 778 QPGFHHATSFTV 789 (1100)
Q Consensus 778 ~p~~~~~~~F~~ 789 (1100)
.|-...+..|++
T Consensus 190 ~~A~l~~~s~sl 201 (830)
T KOG1923|consen 190 APAPLPGASSSL 201 (830)
T ss_pred CcccCchhhhhh
Confidence 333344444443
No 116
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.01 E-value=0.029 Score=62.04 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=54.4
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.||||||+..+++++|...|..+|.+..+.+ .+-...+..+++|.+.++|..|+. |++...+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~ 68 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV 68 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC
Confidence 578999999999999999999998887777765 344457899999999999999995 8887665
No 117
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.88 E-value=0.13 Score=59.72 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCcC
Q 001325 918 AAPFIPPSVTPLAQIQGAPMQNYDQM 943 (1100)
Q Consensus 918 s~Pf~P~svTPLaQ~QgPP~q~~~q~ 943 (1100)
+.+-.|...++.+++++++..+..-+
T Consensus 306 P~~~aP~~~~~ps~~~~a~~~p~~~q 331 (487)
T KOG4672|consen 306 PEPDAPLQPIHPSTFAGAAASPTNFQ 331 (487)
T ss_pred CCCCCCcccCCcccccccccccCcCC
Confidence 34444555555666666554443333
No 118
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.86 E-value=0.036 Score=54.96 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=55.2
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.||||+++..+++|+|...|..++....+.+ .+ ...++.++|+|.+.++|..|...+++....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~ 183 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE 183 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC
Confidence 599999999999999999999999886655533 23 678899999999999999999999954433
No 119
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.80 E-value=0.69 Score=53.22 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=47.5
Q ss_pred cceEEEccCCCcchhHHHHHhhhccc--ccCCcee----ecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMV----TDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag--~kgPv~f----~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
--.+|||+.-=.+++++|+.-+.+.+ .+..++| +...+++.+||-.-+....+.-|+.|-.+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 34689999999999999999998877 3444443 257788889988888877777777765443
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.69 E-value=0.005 Score=75.70 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=105.2
Q ss_pred cCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 558 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 558 ~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
+--...-|++.-.++.+|-||.+...+.||...|..||-++.|.+. +.||+|||+|...++|-+|+.-.++++.
T Consensus 655 ~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 655 ENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 3334455666667889999999999999999999999999988875 5899999999999999999988877654
Q ss_pred eEEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCc---eeecCCCCcccccccCCHHHHHH
Q 001325 632 WRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY---MVTDLSCEGALLMEFRTPEEATT 708 (1100)
Q Consensus 632 ~RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv---~f~Dlsee~aLLmEF~s~eEA~~ 708 (1100)
. -..+.|-|.+-+-+||++..-+.+.+..-.. .....-..+-+.++|.++.+|.+
T Consensus 735 g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~ 792 (881)
T KOG0128|consen 735 G----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASR 792 (881)
T ss_pred h----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhh
Confidence 3 2346677888888999998888876632222 22345566778999999999887
Q ss_pred HHHHhhh
Q 001325 709 AMAHLRQ 715 (1100)
Q Consensus 709 Ak~~l~~ 715 (1100)
...-+..
T Consensus 793 ~~~s~d~ 799 (881)
T KOG0128|consen 793 KVASVDV 799 (881)
T ss_pred hcccchh
Confidence 7555443
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=94.22 E-value=0.062 Score=64.15 Aligned_cols=65 Identities=9% Similarity=0.234 Sum_probs=56.1
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEe---c---cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P---IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~---~---~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
.+-++||||..|+.-....||..+|++||++....++ + .|-|.||..-.-.||-..++-|.-+.+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL 472 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL 472 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh
Confidence 3458999999999999999999999999999977664 2 677999999999999999888776644
No 122
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=94.08 E-value=0.066 Score=62.49 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=60.5
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEE-eccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~-~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
|..+...+|+++|-||+-+-|=.-|+..|..||.+.-.-+ .+.+.-..|-|...+||++|+..|+|.++-
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc
Confidence 5666778999999999999999999999999999886555 444444589999999999999999999874
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=93.95 E-value=0.037 Score=59.81 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=52.4
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+.|-|=++...+...||...|.+||.+..... -++||||+|...+||..|++.|+|..+.
T Consensus 100 ~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 100 FRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred ceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhc
Confidence 45677888888899999999999999954444 7899999999999999999999998754
No 124
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.93 E-value=0.1 Score=44.75 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=39.5
Q ss_pred EeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHH
Q 001325 574 WLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 623 (1100)
Q Consensus 574 WVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~ 623 (1100)
=|-...++-. +++...|..||.|.++.+-...++++|.|++..||+.|+
T Consensus 5 ~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 5 SVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 3444555544 455668999999999998878999999999999999984
No 125
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.82 E-value=0.043 Score=63.87 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=59.3
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-------------------CceEEEEecCHHHHHHHHHhhcCC
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------------------KGFALVEYINIIDAIRAREYIRNH 629 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-------------------rgfAFVeF~~i~DAv~A~~~LqG~ 629 (1100)
+++.|-+=||+-+-.-+.|+.+|+.+|.|.+|++-.+ +-+|||||+..+-|++|.+-|.-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999655 668999999999999999999877
Q ss_pred ceeE
Q 001325 630 FSWR 633 (1100)
Q Consensus 630 ~~~R 633 (1100)
..||
T Consensus 310 ~~wr 313 (484)
T KOG1855|consen 310 QNWR 313 (484)
T ss_pred hhhh
Confidence 7773
No 126
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.74 E-value=0.12 Score=49.90 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=39.4
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcC
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRN 628 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG 628 (1100)
-|.+-+++..++.++|.+.|..||+|.=|-|.++-.-|||-|.+.++|..|++.+.-
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHh
Confidence 466777999999999999999999999999999999999999999999999987754
No 127
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.60 E-value=0.27 Score=59.48 Aligned_cols=140 Identities=24% Similarity=0.400 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccccceec
Q 001325 55 IRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVALI 134 (1100)
Q Consensus 55 ~r~v~~~y~r~k~~~~~~~~~~~~~leq~y~~li~~srgc~svqri~adliprya~~cptaleaa~kv~inm~~~s~a~~ 134 (1100)
|..+|+.|.+|-.- +|- .+=+.+|..+|.++-|=..++|+.|-+||||..+=|+--|.|.-+.+|.-
T Consensus 2 ie~lY~~~~~L~~a---~d~---~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc------- 68 (556)
T PF05918_consen 2 IEKLYENYEILADA---KDK---SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC------- 68 (556)
T ss_dssp HHHHHHHHHHHHHT---GGG---GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHhhcC---CCc---ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-------
Confidence 67899999999872 332 45567999999999999999999999999999999999999998887753
Q ss_pred ccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHH
Q 001325 135 NRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVF 214 (1100)
Q Consensus 135 ~rged~dgva~~ta~aci~gl~dic~~ass~a~~s~v~~gicsav~~~vltffi~~f~gkdi~~~~~~~~~~~qd~~e~~ 214 (1100)
-+||. +.=+.-|-||.+||-.. ++++ ..+-
T Consensus 69 -EDed~-----~iR~~aik~lp~~ck~~---------------------------------------~~~v-----~kva 98 (556)
T PF05918_consen 69 -EDEDV-----QIRKQAIKGLPQLCKDN---------------------------------------PEHV-----SKVA 98 (556)
T ss_dssp -T-SSH-----HHHHHHHHHGGGG--T-----------------------------------------T-H-----HHHH
T ss_pred -hcccH-----HHHHHHHHhHHHHHHhH---------------------------------------HHHH-----hHHH
Confidence 24443 24455688899999652 1111 2456
Q ss_pred HhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCc
Q 001325 215 LGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNP 261 (1100)
Q Consensus 215 ~~lk~~~~~~~~~~~~~l~~~~~l~ll~if~~~p~~~l~acf~l~~s 261 (1100)
++|-|-+.-|+..-++-. --+|+.+|-..||..|.+=|.-+.+
T Consensus 99 DvL~QlL~tdd~~E~~~v----~~sL~~ll~~d~k~tL~~lf~~i~~ 141 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAV----KNSLMSLLKQDPKGTLTGLFSQIES 141 (556)
T ss_dssp HHHHHHTT---HHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHH-
T ss_pred HHHHHHHhcccHHHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 666666655444333322 2477888889999999999998874
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.51 E-value=0.052 Score=65.19 Aligned_cols=70 Identities=21% Similarity=0.363 Sum_probs=62.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhh-ccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--------EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--------RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~-~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--------RI~F~r 638 (1100)
.+|+-|+|-||-.--|...|.++++ ..|-|+.+||...++-+||-|-..+||++-+.+|.|- .| .|.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV-~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNV-QWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhcc-ccCCCCCceeEeeecc
Confidence 3588899999999999999999999 6677889999999999999999999999999999994 34 567763
No 129
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.51 E-value=0.085 Score=52.02 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=55.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-cCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
-++.|||-+.|-.+++||+..-|.++|.+..+++- .-..++.+++-|++..||..|+.||.++-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 48999999999999999999888877766666662 46678999999999999999999999976
No 130
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.19 E-value=0.089 Score=63.02 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=45.1
Q ss_pred cccHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 581 EASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 581 ~vte~dL~~~F~~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+.-+.-|..+|++||++.++.+= .-+||+|+||.+.++|..|++.|+|+++-
T Consensus 75 ~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 75 EKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred HHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 44466788999999999999873 26899999999999999999999998764
No 131
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.04 E-value=0.15 Score=58.34 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=43.7
Q ss_pred HHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 584 EAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~--~~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
++||++.=++||++++|.+| .+.|-|-|.|+|.++|..+++.|+|+.
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 57788889999999999999 599999999999999999999999964
No 132
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=93.02 E-value=0.11 Score=61.09 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=57.1
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.+|||+|+-.+++|+|...+..++.+-.+++. ....++.++.||..+++|..|.+.|++.-.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999877777553 3778899999999999999999999986554
No 133
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.92 E-value=0.16 Score=52.51 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=45.6
Q ss_pred cCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 577 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 577 nLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
|+.+.-.-..+-..++.||+|++|+. .+|--|.|.|+|+.-|-.|+.+.+-..++
T Consensus 97 nm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 97 NMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred cCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 45554445567778899999999986 67899999999999999999999987653
No 134
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.59 E-value=0.081 Score=65.62 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEe
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 637 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~------RI~F~ 637 (1100)
-|||+.--+.++-|..-+.+-.-|..+|..||.+-+.|..|+-+-|.|+|..++-|+-|.++|+|+.+- ||-|+
T Consensus 292 snv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 292 SNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 489999999999999999999999999999999999999999999999999999999999999999764 89998
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
+.
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 53
No 135
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=92.16 E-value=0.68 Score=54.17 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCcccCCC
Q 001325 918 AAPFIPPSVTPLAQIQGA 935 (1100)
Q Consensus 918 s~Pf~P~svTPLaQ~QgP 935 (1100)
+...+|....|+.++...
T Consensus 301 sk~a~P~~~aP~~~~~ps 318 (487)
T KOG4672|consen 301 SKTAIPEPDAPLQPIHPS 318 (487)
T ss_pred ccccCCCCCCCcccCCcc
Confidence 445555555555544433
No 136
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=92.07 E-value=3.3 Score=49.03 Aligned_cols=6 Identities=17% Similarity=0.401 Sum_probs=2.3
Q ss_pred cccccc
Q 001325 877 YLHPVY 882 (1100)
Q Consensus 877 f~~pv~ 882 (1100)
++||-.
T Consensus 299 ~~rPt~ 304 (518)
T KOG1830|consen 299 VVRPTQ 304 (518)
T ss_pred CCCCCC
Confidence 333333
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.93 E-value=0.82 Score=53.24 Aligned_cols=148 Identities=19% Similarity=0.142 Sum_probs=98.8
Q ss_pred eccCCCcccHHHHHHHhhcc----CCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhc---CCcee----------
Q 001325 575 LGSFGPEASEAHIRFQIDRF----GPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIR---NHFSW---------- 632 (1100)
Q Consensus 575 VGnLg~~vte~dL~~~F~~f----GpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~Lq---G~~~~---------- 632 (1100)
.-.|+-++++.|+.+.|..- |-.+.|.|. ++-|=|||.|...+||-.|.+-=+ |++-.
T Consensus 166 mRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv 245 (508)
T KOG1365|consen 166 MRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV 245 (508)
T ss_pred ecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 45688899999999999743 244567664 266899999999999999975433 43321
Q ss_pred ---EEEEeeccCCC---Ccccccccc------cccceEEEccCCCcchhHHHHHhhhccc----ccCCceeec--CCCCc
Q 001325 633 ---RVKFMDVGLGT---KGVINGVAV------GSCFHVYVGNIPNQWAKDEILHESYKVV----YKGPYMVTD--LSCEG 694 (1100)
Q Consensus 633 ---RI~F~r~~~gs---rg~~~Gva~------~~Sr~LwVG~Iss~~~kEELfsE~dkag----~kgPv~f~D--lsee~ 694 (1100)
--+++..+++. -+.+.|+.. +.-.-|-.-|.|=...+|+|++-++-|. ..|-+++.. ....+
T Consensus 246 qqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 246 QQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred HHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 11233222211 111222222 1345677889999999999999888776 334446654 66778
Q ss_pred ccccccCCHHHHHHHHHHhhhhccccCCC
Q 001325 695 ALLMEFRTPEEATTAMAHLRQHRKSRSNY 723 (1100)
Q Consensus 695 aLLmEF~s~eEA~~Ak~~l~~~r~~rs~~ 723 (1100)
-+++||.+.|+|.+|+...+.+.+ +++|
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~m-k~RY 353 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLM-KSRY 353 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhc-ccce
Confidence 899999999999999776655543 4443
No 138
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=91.29 E-value=0.2 Score=41.68 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHhhhcccccCCceeecCCCC-cccccccCCHHHHHHHHHHhhhhcc
Q 001325 672 ILHESYKVVYKGPYMVTDLSCE-GALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 672 LfsE~dkag~kgPv~f~Dlsee-~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
|.+.+.++|.+..+. ..... +.+++||++.+||..|+++|++...
T Consensus 1 L~~~f~~fG~V~~i~--~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIK--IFKKKRGFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EEEEE--EETTSTTEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEEEEE--EEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 445566554443333 34444 9999999999999999999988653
No 139
>PLN03121 nucleic acid binding protein; Provisional
Probab=90.99 E-value=0.27 Score=54.20 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=55.2
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...||||||+...+.++|...|..+|.+..+.+ .|-+..+..+++|.++++|..|+ .|++....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 367999999999999999999998888887755 46666678999999999999997 78887765
No 140
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=90.95 E-value=0.022 Score=53.93 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=57.2
Q ss_pred eccccccCCcccceeeeecccccccccc-cccCCCCccccccccccchhhHHHHhhcc-CCCCCccchhcccC-----CC
Q 001325 1013 WQGALCKSGVHYCTIYAQREESDICKYT-HDISEPAEWPAKLDMTKRTDFRHVKSTFT-STPPNKREVCRLVP-----SS 1085 (1100)
Q Consensus 1013 WQG~L~KSG~~yCtIYaqRidSDICkyt-~t~~Eps~WPs~EDvTlRtDfq~LealFs-skPpkKrEvcrLip-----ss 1085 (1100)
|+|.+...++..|.+.+.-+.-+ |... ..+.+...||...++.-|.+.+.+..... -+..+.++++.+.. ..
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~ 79 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDS 79 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccC
Confidence 99999999999998888887555 5554 55666799999999999999987755554 34455678888888 34
Q ss_pred CCCcchhhhhhhhc
Q 001325 1086 PGDHKGVSFLIHLL 1099 (1100)
Q Consensus 1086 ~~d~~~~~dfi~yl 1099 (1100)
..+++.|+.|++||
T Consensus 80 ~~~~~~~~~l~~Yl 93 (119)
T PF07744_consen 80 NSDRRPFQKLVDYL 93 (119)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566899999997
No 141
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=89.65 E-value=0.46 Score=50.91 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=47.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeec-CCCCcccccccCCHHHHHHHHHHhhh
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~D-lsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
.++.|||||.|..+-..||..-|-|++.+..++.+. -..-..+++||+.+.||.-|...-++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdG 67 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDG 67 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccc
Confidence 589999999999988888888777766555555443 22256789999999999999876664
No 142
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=89.05 E-value=0.81 Score=54.70 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=16.0
Q ss_pred CCccccccccccchhhHHHHhhccCC
Q 001325 1046 PAEWPAKLDMTKRTDFRHVKSTFTST 1071 (1100)
Q Consensus 1046 ps~WPs~EDvTlRtDfq~LealFssk 1071 (1100)
-++|-+.+.+. .|-..++.+|.++
T Consensus 307 ~t~W~s~D~~~--~D~~r~~~LFEsr 330 (817)
T KOG1925|consen 307 ATLWASLDPVS--VDTARLEHLFESR 330 (817)
T ss_pred chhhhccCcce--ecHHHHHHHHHHh
Confidence 44676666655 5666888888854
No 143
>smart00361 RRM_1 RNA recognition motif.
Probab=89.05 E-value=0.38 Score=42.25 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHHhhh----cccccCCce-e-ec-----CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 670 DEILHESY----KVVYKGPYM-V-TD-----LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 670 EELfsE~d----kag~kgPv~-f-~D-----lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
|+|..++. ++|.+..+. + .+ ...++.++++|.+.+||..|+.+|+++..
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45555555 888777663 2 33 34578899999999999999999999754
No 144
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.68 E-value=0.67 Score=52.41 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=42.5
Q ss_pred ccHHHHHHHhhccCCcceEEEeccCce-------EEEEecCHHHHHHHHHhhcCCcee
Q 001325 582 ASEAHIRFQIDRFGPLEHFFFFPIKGF-------ALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~~~rgf-------AFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
--|+++.++-++||.+.+|.+|-..+| -||+|++.+.|+.|+=.|+|...+
T Consensus 298 elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 298 ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 345677788999999999999765554 599999999999999999997544
No 145
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=88.38 E-value=0.29 Score=54.35 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=54.9
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCce------------------EEEEecCHHHHHHHHHhhcCCc
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF------------------ALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgf------------------AFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
.+.-+|+++|+|...-..|+++|+.||.|..|.+.+..-+ ..|||.+-+.|.+-.+.|+|+-
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4556899999999999999999999999999999874333 4689999999999999999976
Q ss_pred ee
Q 001325 631 SW 632 (1100)
Q Consensus 631 ~~ 632 (1100)
++
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 43
No 146
>PF15449 Retinal: Retinal protein
Probab=88.34 E-value=8 Score=50.20 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=12.8
Q ss_pred ccccccCCcccceeeee
Q 001325 1014 QGALCKSGVHYCTIYAQ 1030 (1100)
Q Consensus 1014 QG~L~KSG~~yCtIYaq 1030 (1100)
|..-+|-..|.|.|||-
T Consensus 1132 ~~~saK~~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1132 QAASAKVSGNTCSIFCP 1148 (1287)
T ss_pred ccccccccCCccceecc
Confidence 34556888899999983
No 147
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=87.21 E-value=0.74 Score=47.46 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=48.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.--+|+|-+|....+.|++-.-|--++.+-.+-. . ..--++++|+||++.++|.+|+..+|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 4568999999999999998776665553333322 1 2345789999999999999999999964
No 148
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.68 E-value=1.4 Score=46.75 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=43.9
Q ss_pred ccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhc--CCce----eEEEEeec
Q 001325 582 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFS----WRVKFMDV 639 (1100)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~Lq--G~~~----~RI~F~r~ 639 (1100)
...+.|+++|..|+++-+|...+.=+=..|.|.+.++|++|+..|+ |..+ +|+.|++.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4568999999999999999999988889999999999999999999 7644 38888855
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.30 E-value=1.1 Score=50.21 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=101.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce-EEE-----eccCceEEEEecCHHHHHHHHHhhcCCcee-EEEEeec-
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV- 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~-V~~-----~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~-RI~F~r~- 639 (1100)
...+.+++|++.-++-+.++...|..+|..-. ... .+.++|..|.|...+.+..|.......... +.-+.+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 34677899999999999999999999995543 333 359999999999999999998887765433 1111111
Q ss_pred ---cCCCCcccccccccccceEE-EccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHH
Q 001325 640 ---GLGTKGVINGVAVGSCFHVY-VGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMA 711 (1100)
Q Consensus 640 ---~~gsrg~~~Gva~~~Sr~Lw-VG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~ 711 (1100)
++-.+....+...+++..++ ||+.+...++|+|..++...+.+--+.+. ....++..+++|.+..++..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 01011111122234566666 99999999999999777776655544442 35566677999999999888876
Q ss_pred H
Q 001325 712 H 712 (1100)
Q Consensus 712 ~ 712 (1100)
.
T Consensus 246 ~ 246 (285)
T KOG4210|consen 246 D 246 (285)
T ss_pred c
Confidence 5
No 150
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=86.19 E-value=2.9 Score=52.63 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=13.7
Q ss_pred CCCccccccccccchhh---HHHHhhcc
Q 001325 1045 EPAEWPAKLDMTKRTDF---RHVKSTFT 1069 (1100)
Q Consensus 1045 Eps~WPs~EDvTlRtDf---q~LealFs 1069 (1100)
....|....+....+|. ..++++|+
T Consensus 410 ~~~~w~~~~~~~~~~~~~~~~~~e~lf~ 437 (833)
T KOG1922|consen 410 RSMVWSEVDSSSSLFDPPLSELMEALFG 437 (833)
T ss_pred cCCCCCccccCCcCCCCCcccccccchh
Confidence 34456655555554444 55566664
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.89 E-value=0.43 Score=53.44 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=59.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
....-+.||++.-+++++||...|..+|.|.++++- ..+|||||.|.+..++..|+.. ++..+. ++++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 333444599999999999999999999999999983 2789999999999999999998 777654 67777
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 54
No 152
>PLN03213 repressor of silencing 3; Provisional
Probab=84.91 E-value=1.1 Score=53.41 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=53.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCH--HHHHHHHHHhhhhc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP--EEATTAMAHLRQHR 717 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~--eEA~~Ak~~l~~~r 717 (1100)
....|||||++-.++.|+|..=|..+|.+-.+.++--..++.++|||.+. +++..|+..|++..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAE 74 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCe
Confidence 45789999999999999999999988877777665334489999999988 67899999888844
No 153
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=83.51 E-value=0.54 Score=52.18 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=38.6
Q ss_pred HHHHHHhh-ccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 585 AHIRFQID-RFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 585 ~dL~~~F~-~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
+||..+|+ +||.|+++.+-. -+|=++|.|+..+||+.|.++|+|..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc
Confidence 45555566 999999997743 57889999999999999999999965
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.42 E-value=1.1 Score=54.02 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=57.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.+.|||=+++..++-++|+..|.+.|.+..+.. ....++-.++||+++-+|.+|.+.|++.+..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 446899999999999999999999998886655432 4567889999999999999999999987665
No 155
>PRK15313 autotransport protein MisL; Provisional
Probab=81.90 E-value=3 Score=53.36 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=4.4
Q ss_pred ccceEEecc
Q 001325 569 ASKQLWLGS 577 (1100)
Q Consensus 569 ~Sr~LWVGn 577 (1100)
.+++++||+
T Consensus 182 ~~~~i~~g~ 190 (955)
T PRK15313 182 GSANIYVGD 190 (955)
T ss_pred ccceEEEcC
Confidence 345555554
No 156
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=80.50 E-value=10 Score=49.98 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=8.6
Q ss_pred hhccccccccCchhHhh
Q 001325 102 ADLVPRYALYCPTALEA 118 (1100)
Q Consensus 102 adliprya~~cptalea 118 (1100)
-|+|=|||-+-|-++-+
T Consensus 1188 ~~iIdrfafv~ppvva~ 1204 (1958)
T KOG0391|consen 1188 QDIIDRFAFVIPPVVAA 1204 (1958)
T ss_pred HHHHHHheeecccccCC
Confidence 34555555555554443
No 157
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=74 Score=41.30 Aligned_cols=8 Identities=38% Similarity=0.405 Sum_probs=3.2
Q ss_pred CCCCcccC
Q 001325 926 VTPLAQIQ 933 (1100)
Q Consensus 926 vTPLaQ~Q 933 (1100)
..|++|.+
T Consensus 137 ~~pls~~~ 144 (1007)
T KOG1984|consen 137 AGPLSQGP 144 (1007)
T ss_pred CCccccCC
Confidence 33444433
No 158
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=79.89 E-value=7.7 Score=43.88 Aligned_cols=9 Identities=33% Similarity=0.545 Sum_probs=3.5
Q ss_pred CCccchhcc
Q 001325 1073 PNKREVCRL 1081 (1100)
Q Consensus 1073 pkKrEvcrL 1081 (1100)
-+.|+..||
T Consensus 180 dn~kaa~rl 188 (297)
T PF07174_consen 180 DNTKAAVRL 188 (297)
T ss_pred ChHHHHHHH
Confidence 333444433
No 159
>PRK09752 adhesin; Provisional
Probab=79.50 E-value=1.8 Score=56.33 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.5
Q ss_pred heeeeccccce
Q 001325 122 VVIYMHNSSVA 132 (1100)
Q Consensus 122 v~inm~~~s~a 132 (1100)
+.=+|..|++|
T Consensus 50 ~~~~~~~~~~~ 60 (1250)
T PRK09752 50 LSGITQDWSIA 60 (1250)
T ss_pred ccCCcccceec
Confidence 45688999876
No 160
>PRK09752 adhesin; Provisional
Probab=79.33 E-value=1.7 Score=56.47 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=3.0
Q ss_pred ceEEEc
Q 001325 656 FHVYVG 661 (1100)
Q Consensus 656 r~LwVG 661 (1100)
..||||
T Consensus 702 ~~~~~~ 707 (1250)
T PRK09752 702 SSLWVG 707 (1250)
T ss_pred heeEEc
Confidence 345555
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.89 E-value=2.2 Score=50.03 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=53.3
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCceeEEEEe
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFM 637 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---------~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~ 637 (1100)
-|-|.||.|.+|.+++.-+|+..|.|+.+.+|+ -.-.|||-|.|..-+..|-+.-+-.++-|.-|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEE
Confidence 466899999999999999999999999999997 235799999999998888665554444444443
No 162
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=78.33 E-value=5.2 Score=49.79 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=58.9
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcc-eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-EEEEeec
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV 639 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe-~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~-RI~F~r~ 639 (1100)
+-|=+-|++-+|+-+||.+.|.-|-.+- +|.+.+ +-|=|.|.|++.++|.+|...|+|+.+. |+-++|.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788999999999999999999999987 566543 5678999999999999999999999987 6555543
No 163
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=77.60 E-value=2.2 Score=53.00 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-------ecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-------~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
...+|||||++++++.+.|+-.|..||.+..+.+ .--.++++-++=|-+-.||.+||+.|+++-
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 5789999999999999999988887764444433 125678899999999999999999999954
No 164
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.30 E-value=1.9 Score=55.66 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=13.7
Q ss_pred HHhhccCCCCC---ccchhcccCCC
Q 001325 1064 VKSTFTSTPPN---KREVCRLVPSS 1085 (1100)
Q Consensus 1064 LealFsskPpk---KrEvcrLipss 1085 (1100)
|+.+-.+-|.. -+|||.+.++.
T Consensus 122 vlkLLeNmP~pWe~~~evkvlyh~~ 146 (2365)
T COG5178 122 VLKLLENMPSPWEDVSEVKVLYHCH 146 (2365)
T ss_pred HHHHHhcCCChHhhhheeeEEeecc
Confidence 44455554443 67888888876
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=77.30 E-value=4.8 Score=39.19 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCCcccHHHHHHHhhccCCcceEE-------------EeccCceEEEEecCHHHHHHHHHh
Q 001325 578 FGPEASEAHIRFQIDRFGPLEHFF-------------FFPIKGFALVEYINIIDAIRAREY 625 (1100)
Q Consensus 578 Lg~~vte~dL~~~F~~fGpLe~V~-------------~~~~rgfAFVeF~~i~DAv~A~~~ 625 (1100)
.++. ....|.++|++||.|-+.. .....++--|.|.+..+|.+|++.
T Consensus 14 fp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 14 FPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp --GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred cCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 3444 5678889999999987764 566899999999999999999864
No 166
>PHA03378 EBNA-3B; Provisional
Probab=77.23 E-value=39 Score=42.56 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=9.9
Q ss_pred cccCCHHHHHHHHHHhh
Q 001325 698 MEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 698 mEF~s~eEA~~Ak~~l~ 714 (1100)
||=++++--.++|+-+.
T Consensus 509 le~d~e~~eq~vmat~l 525 (991)
T PHA03378 509 LEKDDEDMEQRVMATLL 525 (991)
T ss_pred HhhchHHHHHHHHHhhC
Confidence 55555555566666554
No 167
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.32 E-value=1.8 Score=47.67 Aligned_cols=60 Identities=22% Similarity=0.411 Sum_probs=43.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCce-e---ec---CCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-V---TD---LSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~-f---~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.-|.||||+.-..++. .++|- +|+.+|.+. + .| ..-++..++||+--|||.+|+.+|+.-
T Consensus 9 ~KrtlYVGGladeVte-kvLha--AFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTE-KVLHA--AFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred cceeEEeccchHHHHH-HHHHh--ccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 4689999999877654 44443 333555551 1 23 334678899999999999999999984
No 168
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=75.00 E-value=11 Score=47.67 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=7.2
Q ss_pred HHHHhhccCCCC
Q 001325 1062 RHVKSTFTSTPP 1073 (1100)
Q Consensus 1062 q~LealFsskPp 1073 (1100)
..++.+....|+
T Consensus 503 ~~l~~l~~~~pt 514 (833)
T KOG1922|consen 503 DQLEKLLKFAPT 514 (833)
T ss_pred HHHHHHHccCCC
Confidence 456666666663
No 169
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=74.05 E-value=4 Score=46.61 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=57.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
-+=+.|+||.++=.++..+|-.||.++|.+..+.+ .| .-+++.+||||..+-|-..|-++..++.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 38999999999999999999999999987777743 34 66789999999999999999998887554
No 170
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=73.86 E-value=3.9 Score=42.93 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=44.8
Q ss_pred cceEEeccCCCcccHHHHHHHhhc-cCCc---ceEEE-e-------ccCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDR-FGPL---EHFFF-F-------PIKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~-fGpL---e~V~~-~-------~~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
..+|-|-+|+|+.||+++.+++.. +|.- ..|.. + +.-+-|||.|.+.+|...=++.++|..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 458999999999999999998887 7766 33331 1 134679999999999999999999965
No 171
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.55 E-value=18 Score=46.68 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred hccCCCceEeechh--hhhccCCc---------hHHHHhhhcccCCCc-----hhhhhhhHHHH
Q 001325 189 SSFDGKDIIHTVDK--EITKMLDS---------DEVFLGLKKKFSDED-----ESSLIKLSKFR 236 (1100)
Q Consensus 189 ~~f~gkdi~~~~~~--~~~~~qd~---------~e~~~~lk~~~~~~~-----~~~~~~l~~~~ 236 (1100)
.-+++-|||+|.+. +++.|+.. .+-+.+||+-+++++ .--+++..|.|
T Consensus 94 ~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkLLssGsFYfS~~fDlt~~~q~r 157 (1080)
T KOG0566|consen 94 GKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKLLSSGSFYFSSDFDLTCFAQNR 157 (1080)
T ss_pred ccccceeEEEeccchhhheecccCCCCccccccccchHHHHHHhhCCcEEEeeccchhhHHHhc
Confidence 34567777877777 66666532 256677777766653 12334555555
No 172
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=73.48 E-value=3.9 Score=47.18 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=57.1
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee--cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~--Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
-|.|+|-+||=..-+-+|-.=|.+||++-.++|+ +-.+++.=+|-|++.+||.+|.+-|.+-..|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee
Confidence 5899999999999899999999999988888775 4778888999999999999999988876555
No 173
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=73.39 E-value=3.3 Score=46.38 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=49.1
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEe---c--cCceEEEEecCHHHHHHHHHhh
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---P--IKGFALVEYINIIDAIRAREYI 626 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~---~--~rgfAFVeF~~i~DAv~A~~~L 626 (1100)
|..-..|||-||.+.|+.+.|+..|++||+|+.-.++ + .-+=.+|+|.+.-.|..|.+..
T Consensus 28 fa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 28 FAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 4444789999999999999999999999999965543 2 3345699999999998888776
No 174
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=73.10 E-value=8.4 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=40.4
Q ss_pred eEEeccCCCcccH----HHHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 572 QLWLGSFGPEASE----AHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 572 ~LWVGnLg~~vte----~dL~~~F~~fGp-Le~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.|+|-||+.+..- .-|+.+++-||= +-+| ..+.|+|-|.+.+.|.+|.+.|+|..+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 5899999998664 456788888874 3333 3699999999999999999999999776
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.63 E-value=77 Score=41.77 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=6.5
Q ss_pred cceEEEccCCCc
Q 001325 655 CFHVYVGNIPNQ 666 (1100)
Q Consensus 655 Sr~LwVG~Iss~ 666 (1100)
+++|-+|.+.+.
T Consensus 495 s~alitgd~~~a 506 (1049)
T KOG0307|consen 495 SEALITGDFKSA 506 (1049)
T ss_pred HHHHHhccHHHH
Confidence 555555555553
No 176
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=72.03 E-value=6.4 Score=44.00 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=52.7
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.++.|-|-+.|-....++|..=|..||.+-.+-+ . ..-.++.++|-|.+-+||.+|.+.|+++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcc
Confidence 6778999999999999999777776664444432 2 36688999999999999999999999976
No 177
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=71.10 E-value=47 Score=42.05 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=26.9
Q ss_pred CCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 683 GPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 683 gPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
|.+-|+ ..|++-++|-|.+-|||+.||..=+.+-+|
T Consensus 31 GgVHII-GGe~GeaFI~FsTDeDARlaM~kdr~~i~g 66 (944)
T KOG4307|consen 31 GGVHII-GGEEGEAFIGFSTDEDARLAMTKDRLMIHG 66 (944)
T ss_pred CceEEe-cccccceEEEecccchhhhhhhhcccceec
Confidence 344433 457788899999999999999876666655
No 178
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=70.67 E-value=71 Score=39.15 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=8.8
Q ss_pred cccccCCHHH---HHHHHHHhhh
Q 001325 696 LLMEFRTPEE---ATTAMAHLRQ 715 (1100)
Q Consensus 696 LLmEF~s~eE---A~~Ak~~l~~ 715 (1100)
.||.=++.|- |.++.+.|-+
T Consensus 207 ~~Isadt~eki~~Ai~vienli~ 229 (554)
T KOG0119|consen 207 CLISADTQEKIKKAIAVIENLIQ 229 (554)
T ss_pred EEEecchHHHHHHHHHHHHHHHH
Confidence 3455444444 4444444443
No 179
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=70.02 E-value=5.8 Score=43.31 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=52.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCc-ee------ecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MV------TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv-~f------~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..-.+||+.|+.-.-+-+++.-+..++ |++ ++ ..+.+++.++|||+++|.|..|-.-||.+...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 456789999999999999998888764 333 11 24789999999999999999999999987643
No 180
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=69.47 E-value=48 Score=42.21 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=6.1
Q ss_pred HHHHhhhcccCC
Q 001325 212 EVFLGLKKKFSD 223 (1100)
Q Consensus 212 e~~~~lk~~~~~ 223 (1100)
|=|..|-+|+++
T Consensus 81 e~f~glarKysn 92 (759)
T PF05518_consen 81 ENFEGLARKYSN 92 (759)
T ss_pred HHHHHHHHHhcc
Confidence 335555555554
No 181
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=67.18 E-value=13 Score=41.96 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=63.3
Q ss_pred HHHHHHHhhcCCcee----EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCc-eeecCC-
Q 001325 618 DAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLS- 691 (1100)
Q Consensus 618 DAv~A~~~LqG~~~~----RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv-~f~Dls- 691 (1100)
=|..|+++|+|..+. ||+|+ ....|||=+.++.++-|.+..++..|+..+-. .+.|-.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa----------------~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFA----------------MHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEee----------------ccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 378899999999765 99988 23789999999999999999999987644433 334433
Q ss_pred -CCcccccccCCHHHHHHHHHHhhh
Q 001325 692 -CEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 692 -ee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
....=++||.+--.|..|+...+.
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhcc
Confidence 334457999999999999877643
No 182
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.46 E-value=14 Score=45.11 Aligned_cols=19 Identities=53% Similarity=0.650 Sum_probs=8.6
Q ss_pred HHhccCC--chHHHHHHhhcc
Q 001325 87 LITASRG--CTSVQRIVADLV 105 (1100)
Q Consensus 87 li~~srg--c~svqri~adli 105 (1100)
|++.-.| -|++=|++|..+
T Consensus 42 Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 42 LFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 4444443 355555555433
No 183
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.04 E-value=51 Score=42.96 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCCceEeechhhhhccCCchHHHHhhhcccCCCch-hhhhhhHHHHHh
Q 001325 192 DGKDIIHTVDKEITKMLDSDEVFLGLKKKFSDEDE-SSLIKLSKFRLL 238 (1100)
Q Consensus 192 ~gkdi~~~~~~~~~~~qd~~e~~~~lk~~~~~~~~-~~~~~l~~~~~l 238 (1100)
...-|++|.|-++.+|-+..+.|-.|.....+++- .+...+++||-|
T Consensus 89 ~~~sv~ki~~vdf~~l~~~~~dFi~l~~~~~~~~~~~~~~~~s~LrkL 136 (1080)
T KOG0566|consen 89 GSESVGKIEDVDFYSLTNTVWDFISLERSSSPEDTLYPKHPCSELRKL 136 (1080)
T ss_pred CCceeccccceeEEEeccchhhheecccCCCCccccccccchHHHHHH
Confidence 33446666666666666666555555444444322 223445555544
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=64.01 E-value=14 Score=45.28 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=60.0
Q ss_pred ccCCccccccccccceEEeccCCCcccHHHHHHHhhc--cCCcceEEEeccCceEEEEecCHHHHHHHHHhh-------c
Q 001325 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDR--FGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-------R 627 (1100)
Q Consensus 557 ~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~--fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L-------q 627 (1100)
+|.+---.--...-|-+-+-.|+....+++++.+|.- +=+.-+.-|+..-++ ||.|++..||-.|.++| |
T Consensus 162 vDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 162 VDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred eccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhc
Confidence 3333333344556778899999999999999999975 566667777765555 99999999999998877 5
Q ss_pred CCcee-EEE
Q 001325 628 NHFSW-RVK 635 (1100)
Q Consensus 628 G~~~~-RI~ 635 (1100)
|+.++ ||+
T Consensus 241 gKpImARIK 249 (684)
T KOG2591|consen 241 GKPIMARIK 249 (684)
T ss_pred Ccchhhhhh
Confidence 77777 877
No 185
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.64 E-value=64 Score=41.56 Aligned_cols=12 Identities=33% Similarity=0.130 Sum_probs=6.0
Q ss_pred eccccccCCccc
Q 001325 1013 WQGALCKSGVHY 1024 (1100)
Q Consensus 1013 WQG~L~KSG~~y 1024 (1100)
-|.-+.|++..+
T Consensus 183 t~sLl~kskLPl 194 (887)
T KOG1985|consen 183 TQSLLKKSKLPL 194 (887)
T ss_pred cHHHHHhcCCCc
Confidence 344455555544
No 186
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.73 E-value=35 Score=41.89 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=5.0
Q ss_pred ccceeccccc
Q 001325 1009 LQYQWQGALC 1018 (1100)
Q Consensus 1009 ~~~qWQG~L~ 1018 (1100)
++-+|+-.+.
T Consensus 467 ~~~~w~~~~~ 476 (585)
T PRK14950 467 LEAIWKQILR 476 (585)
T ss_pred HHHHHHHHHH
Confidence 4455665443
No 187
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=62.48 E-value=29 Score=42.64 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=3.4
Q ss_pred CCcccccc
Q 001325 767 GSPHTAPF 774 (1100)
Q Consensus 767 Gei~rf~i 774 (1100)
|.-.||++
T Consensus 41 G~~~Ry~~ 48 (582)
T PF03276_consen 41 GPGDRYQL 48 (582)
T ss_pred CCccceeE
Confidence 44444443
No 188
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=60.70 E-value=8.4 Score=45.79 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=44.8
Q ss_pred cceEEEccCCCcchhHHHHHhhhccccc--CCceeec--CCCCcccccccCCHHHHHHHHHH
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVTD--LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~k--gPv~f~D--lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
-.+|||+++|...+.++|+++|..|+.+ +.+.++. ...-+..++||++.+++.+|...
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 3449999999999999999999999844 4444433 33337889999999998887654
No 189
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.27 E-value=24 Score=42.57 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=11.6
Q ss_pred cccccCCHHHHHHHHHHhhhhccccCC
Q 001325 696 LLMEFRTPEEATTAMAHLRQHRKSRSN 722 (1100)
Q Consensus 696 LLmEF~s~eEA~~Ak~~l~~~r~~rs~ 722 (1100)
--+||..-|.-+.| +.|..||.+|++
T Consensus 317 ~e~dfSDDEkEaea-k~~kKQrk~r~~ 342 (483)
T KOG2236|consen 317 REQDFSDDEKEAEA-KQMKKQRKRRSK 342 (483)
T ss_pred hhhccchHHHHHHH-HHHHHHhhcccc
Confidence 35777554333333 333234544444
No 190
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=58.84 E-value=3.3e+02 Score=33.80 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=4.6
Q ss_pred CCCCCCCCCCcc
Q 001325 866 IPPPQPIQPTQY 877 (1100)
Q Consensus 866 ippp~~~q~~~f 877 (1100)
||.|++-+..+|
T Consensus 401 ~p~~p~n~~p~~ 412 (554)
T KOG0119|consen 401 IPRPPQNSAPSS 412 (554)
T ss_pred CCCCCCCCCCCC
Confidence 443333333334
No 191
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=58.00 E-value=13 Score=43.16 Aligned_cols=62 Identities=11% Similarity=0.244 Sum_probs=50.1
Q ss_pred cceEEeccCCCcccHHHH------HHHhhccCCcceEEEec-------cCceE--EEEecCHHHHHHHHHhhcCCce
Q 001325 570 SKQLWLGSFGPEASEAHI------RFQIDRFGPLEHFFFFP-------IKGFA--LVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL------~~~F~~fGpLe~V~~~~-------~rgfA--FVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
-+-+||-.|++-|..+++ .+-|++||+|..+.+-+ --+-| ||.|-.-+||.+++...+|+.+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 356799999999888883 57899999999998843 11234 9999999999999999999754
No 192
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=58.00 E-value=21 Score=34.68 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=52.9
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCcee-------ecCCCCcccccccCCHHHHHHHHHHhhhhccccCCC
Q 001325 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHRKSRSNY 723 (1100)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-------~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~rs~~ 723 (1100)
.|-|=+||+..+.++|..+++.. ..+.+.| .....-+.++|.|-+++.|..+.+..++++-...++
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~-~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEH-FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh-ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 46678999999999999999875 4555554 234456889999999999999999999999775443
No 193
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=57.51 E-value=15 Score=41.55 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=103.9
Q ss_pred cccceEEeccCCCcccHHH-H--HHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee-E-EEEe
Q 001325 568 SASKQLWLGSFGPEASEAH-I--RFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-R-VKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~d-L--~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~-R-I~F~ 637 (1100)
.+-=.+.+|++++.|..+- | ...|+.|-.|..-.+++ -+++||+.|+.-.--..+-..-.++.+. + ||-+
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 5556678889988877665 4 78899999888666543 6799999998665555555555555554 2 5543
Q ss_pred eccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHh
Q 001325 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHL 713 (1100)
Q Consensus 638 r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l 713 (1100)
+-++=-+-..-- =-..--.|+-|-.++.+++|-|-.-|.+|-.|--..++ .....++=||-|.+++|+.+||.-|
T Consensus 174 ~gtswedPsl~e-w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 174 AGTSWEDPSLAE-WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cccccCCccccc-CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhh
Confidence 211000000000 00135678999999999999888888877754444332 3667888899999999999999999
Q ss_pred hhhccc
Q 001325 714 RQHRKS 719 (1100)
Q Consensus 714 ~~~r~~ 719 (1100)
+++--|
T Consensus 253 ~gkyVg 258 (290)
T KOG0226|consen 253 NGKYVG 258 (290)
T ss_pred cccccc
Confidence 998877
No 194
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=56.92 E-value=25 Score=39.46 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=6.0
Q ss_pred Ccccccccccc
Q 001325 1047 AEWPAKLDMTK 1057 (1100)
Q Consensus 1047 s~WPs~EDvTl 1057 (1100)
..-|+.+|+++
T Consensus 235 ~~~PnMldVLK 245 (253)
T PF05308_consen 235 PDVPNMLDVLK 245 (253)
T ss_pred cCCccHHHHHH
Confidence 34566666643
No 195
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=55.83 E-value=15 Score=44.57 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=16.4
Q ss_pred cccccceeccccccCCc-----ccceeeeecccc
Q 001325 1006 GQLLQYQWQGALCKSGV-----HYCTIYAQREES 1034 (1100)
Q Consensus 1006 ~~~~~~qWQG~L~KSG~-----~yCtIYaqRidS 1034 (1100)
+.-+...|..+.-..|- ..|..+|-.+|-
T Consensus 282 r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~ 315 (817)
T KOG1925|consen 282 RKTVKLFWRDVKLAGGHGVSASRPCATLWASLDP 315 (817)
T ss_pred CceeEEEeecceecCCCCCccccccchhhhccCc
Confidence 34467788776655542 335555555543
No 196
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.54 E-value=5.1e+02 Score=34.33 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=3.3
Q ss_pred cccccccc
Q 001325 1050 PAKLDMTK 1057 (1100)
Q Consensus 1050 Ps~EDvTl 1057 (1100)
|+..|+.+
T Consensus 298 P~T~Dl~~ 305 (1007)
T KOG1984|consen 298 PCTNDLLK 305 (1007)
T ss_pred CccHhHHH
Confidence 34444433
No 197
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=55.39 E-value=19 Score=40.36 Aligned_cols=6 Identities=17% Similarity=0.568 Sum_probs=2.5
Q ss_pred CCccCC
Q 001325 819 QSNWSV 824 (1100)
Q Consensus 819 ~a~w~~ 824 (1100)
..+|.+
T Consensus 58 Dv~wva 63 (253)
T PF05308_consen 58 DVLWVA 63 (253)
T ss_pred hhccee
Confidence 344443
No 198
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.32 E-value=1.4e+02 Score=38.85 Aligned_cols=6 Identities=33% Similarity=0.744 Sum_probs=2.2
Q ss_pred ccCCCc
Q 001325 907 VVPNTF 912 (1100)
Q Consensus 907 vmP~~f 912 (1100)
|+|+++
T Consensus 84 ~~~~Sy 89 (887)
T KOG1985|consen 84 VGPPSY 89 (887)
T ss_pred CCCcch
Confidence 333333
No 199
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.23 E-value=2.5e+02 Score=37.49 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.5
Q ss_pred ccccccCCHH
Q 001325 695 ALLMEFRTPE 704 (1100)
Q Consensus 695 aLLmEF~s~e 704 (1100)
++++||.++-
T Consensus 666 ~~~~~yanll 675 (1049)
T KOG0307|consen 666 KKFSEYANLL 675 (1049)
T ss_pred HHHHHHHHHH
Confidence 3444554443
No 200
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=53.08 E-value=25 Score=42.80 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=85.0
Q ss_pred eeccCCccccc---cccccceEEeccCCCcccHHHHHHHhh-ccCCcceEEEe------ccCceEEEEecCHHHHHHHHH
Q 001325 555 WYFDEDPAAMD---IFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF------PIKGFALVEYINIIDAIRARE 624 (1100)
Q Consensus 555 ~~~~g~p~a~d---v~~~Sr~LWVGnLg~~vte~dL~~~F~-~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~ 624 (1100)
|.+.-.-+.+| .+-+.|+++||.|+.-++..||...|+ -||-+.-|-+. .++|-+=|.|.|-.-=++|+.
T Consensus 352 W~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 352 WVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred eEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 65544444444 456799999999999999999999999 89999988873 279999999999888888876
Q ss_pred hhcCCceeEEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhccc---ccCCceeecCCCCcccccccC
Q 001325 625 YIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV---YKGPYMVTDLSCEGALLMEFR 701 (1100)
Q Consensus 625 ~LqG~~~~RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag---~kgPv~f~Dlsee~aLLmEF~ 701 (1100)
+ +|...+ + ..-.+.+ .|.+.+-+|++.+|....- +++|+ =..++-.+.|+
T Consensus 432 a---------rFvql~--h--------~d~~KRV---EIkPYv~eDq~CdeC~g~~c~~q~aPf-----FC~n~~C~QYY 484 (520)
T KOG0129|consen 432 A---------RFVQLD--H--------TDIDKRV---EIKPYVMEDQLCDECGGRRCGGQFAPF-----FCRNATCFQYY 484 (520)
T ss_pred h---------heEEEe--c--------cccceee---eecceeccccchhhhcCeeccCccCCc-----ccCCccHHhhh
Confidence 5 333211 0 0012221 3677888899999998733 66664 23455666666
Q ss_pred C
Q 001325 702 T 702 (1100)
Q Consensus 702 s 702 (1100)
=
T Consensus 485 C 485 (520)
T KOG0129|consen 485 C 485 (520)
T ss_pred c
Confidence 4
No 201
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=50.05 E-value=56 Score=41.66 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=5.9
Q ss_pred CCCCCCCCCccee
Q 001325 542 LPVPYASTTSQIV 554 (1100)
Q Consensus 542 ~p~~~~~~~s~~~ 554 (1100)
+|.+.+.+.+++.
T Consensus 280 lpal~~~~~~~~a 292 (759)
T PF05518_consen 280 LPALASPAWSSVA 292 (759)
T ss_pred CccccccchhhHh
Confidence 4444444444443
No 202
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=49.46 E-value=8.4 Score=42.66 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=46.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCc---eeecCCCCc--ccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY---MVTDLSCEG--ALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv---~f~Dlsee~--aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+-.-+.||||+..+.++ |||+.|+-+ .-||+ .+.+..+.+ .++++|.++--..-|+.-+++-+..
T Consensus 6 ae~drtl~v~n~~~~v~-eelL~Elfi--qaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVS-EELLSELFI--QAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred cchhhHHHHHhhhhhhh-HHHHHHHhh--ccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 44689999999998875 556666554 33444 332322222 5899999999999999999997766
No 203
>PLN00131 hypothetical protein; Provisional
Probab=48.18 E-value=34 Score=36.34 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=39.8
Q ss_pred CCcccccccccCCCCCCCCCC---CCCCCCCCCCCCCCCCHHHHHHHh-hchHHHHHHHH
Q 001325 5 EQPLKKRKLYDLPPESPKPVE---GPQSDVVPPQTPPPLSQDEIQSRR-RNKDEIRSVYE 60 (1100)
Q Consensus 5 e~p~kkrkl~~~p~~~p~p~~---~~~~~~~~~~~~~p~~~ee~~~~r-rn~~e~r~v~~ 60 (1100)
..-+-||-..++-+. |||.. .+|++-.-|.++||+...+.+.|| |-.||+|-+.+
T Consensus 89 ~~~~SrrP~~DLNst-pqpeldlnqpaaheqepepapplddqdlltkrkrvseelrlllq 147 (218)
T PLN00131 89 DAGPSRRPVLDLNST-PQPELDLNQPAAHEQEPEPAPPLDDQDLLTKRKRVSEELRLLLQ 147 (218)
T ss_pred CCCcCcCCcccCCCC-CCcccccCCccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 345677888887776 66665 344445678889999888887766 66888988775
No 204
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=48.07 E-value=22 Score=42.28 Aligned_cols=90 Identities=23% Similarity=0.459 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeeccccce
Q 001325 53 DEIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVA 132 (1100)
Q Consensus 53 ~e~r~v~~~y~r~k~~~~~~~~~~~~~leq~y~~li~~srgc~svqri~adliprya~~cptaleaa~kv~inm~~~s~a 132 (1100)
+-|.++|++|.||-..-.+ . +=-++|.-+|.++.|-+--+|+.|-+||||--|-|.--.-|.-+-.|.
T Consensus 2 ~~ie~ly~~~e~l~~a~dk-----~-q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~------ 69 (460)
T KOG2213|consen 2 DNIEKLYEFYEILSEATDK-----S-QHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDL------ 69 (460)
T ss_pred chHHHHHHHHHHHHhhchh-----h-hhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhcc------
Confidence 3588999999998543211 1 344789999999999999999999999999999886444444333332
Q ss_pred ecccCCCCcchhhhhhhhhhccccccccc
Q 001325 133 LINRGEDADGVAFQTASACIFGLGDICRT 161 (1100)
Q Consensus 133 ~~~rged~dgva~~ta~aci~gl~dic~~ 161 (1100)
. .+|--||.-| -|-||--.|-.
T Consensus 70 -~--ed~d~~ir~q----aik~lp~fc~~ 91 (460)
T KOG2213|consen 70 -C--EDDDVGIRRQ----AIKGLPLFCKG 91 (460)
T ss_pred -c--cccchhhHHH----HHhccchhccC
Confidence 1 1222244443 57788888864
No 205
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=46.61 E-value=17 Score=43.51 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=12.5
Q ss_pred ccceEEEccCCCc-chhHHHHHhh
Q 001325 654 SCFHVYVGNIPNQ-WAKDEILHES 676 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~-~~kEELfsE~ 676 (1100)
+....=|+.+++. ..-|++..|.
T Consensus 37 ~~~~~~v~~~p~~i~Ayd~~i~~~ 60 (480)
T KOG2675|consen 37 AASAGDVAAVPPSIRAYDDLISEP 60 (480)
T ss_pred cccccccccCchHHHHHHHHHHhH
Confidence 3444456666665 4556655554
No 206
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=46.10 E-value=3.2e+02 Score=33.42 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=5.9
Q ss_pred CCCCCCcccccc
Q 001325 870 QPIQPTQYLHPV 881 (1100)
Q Consensus 870 ~~~q~~~f~~pv 881 (1100)
|.||+-.|+|..
T Consensus 282 ~~~q~~~~~~~~ 293 (483)
T KOG2546|consen 282 QAIQPPVCVCSF 293 (483)
T ss_pred cccCCceeeeec
Confidence 455554554443
No 207
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=44.59 E-value=82 Score=30.66 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=43.3
Q ss_pred CCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEEE
Q 001325 578 FGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 635 (1100)
Q Consensus 578 Lg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~ 635 (1100)
.+..=-..||..+|..||.|.==|+- -.-|||...+.+.|..|++.+.=...++|.
T Consensus 16 FPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 16 FPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp --TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred CchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 77777889999999999999866763 478999999999999999999765556554
No 208
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=43.13 E-value=24 Score=30.45 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=35.4
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHH
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAM 710 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak 710 (1100)
+.|=|-|.+.. ..++++.-|..+|.+..+.+. ...+.+.|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~-~~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD-LAEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch-HHHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 34555566543 457777777765544444432 36899999999999999884
No 209
>PHA03378 EBNA-3B; Provisional
Probab=43.10 E-value=1.7e+02 Score=37.45 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=8.3
Q ss_pred CCCCccccccccCCC
Q 001325 872 IQPTQYLHPVYLPPN 886 (1100)
Q Consensus 872 ~q~~~f~~pv~~~P~ 886 (1100)
.|+..|-.+|+..|.
T Consensus 638 mqp~~f~~~~~~tp~ 652 (991)
T PHA03378 638 MQPITFNVLVFPTPH 652 (991)
T ss_pred ccccccccccCCCCC
Confidence 345556666665443
No 210
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=41.38 E-value=34 Score=40.17 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=48.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCcccccccCCHHHHHHHHHHh
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHL 713 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~Dlsee~aLLmEF~s~eEA~~Ak~~l 713 (1100)
.+....||||+.-+.+..-+|-.-|-+ .|++++ ..+..+..++|+|.+-+.|..|+...
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyq---yGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQ---YGEIRSIRILPRKGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhh---cCCeeeEEeecccccceeeehhhHHHHHHHHhh
Confidence 456899999999998888888888875 566655 35777889999999999999987643
No 211
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=40.89 E-value=36 Score=33.16 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=37.0
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCC-CcccccccCCHHHHHHHHHHhhhh
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-EGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlse-e~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
+.|.|-++...+++|+|-..|.. ++++.++|+.. ..-.+|-|.+.++|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~---~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ---FGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S---S--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHh---cCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46778888899999999999985 55888887544 566789999999999999988776
No 212
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.37 E-value=74 Score=38.66 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHhhhhccccCC
Q 001325 701 RTPEEATTAMAHLRQHRKSRSN 722 (1100)
Q Consensus 701 ~s~eEA~~Ak~~l~~~r~~rs~ 722 (1100)
+...+|++.|+...++.+-+.+
T Consensus 325 EkEaeak~~kKQrk~r~~~k~~ 346 (483)
T KOG2236|consen 325 EKEAEAKQMKKQRKRRSKVKFS 346 (483)
T ss_pred HHHHHHHHHHHHhhcccccccc
Confidence 4577888887766665555555
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=38.72 E-value=21 Score=41.37 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=47.0
Q ss_pred ceEEeccCCCcccHHHHHH---HhhccCCcceEEEeccCc---------eEEEEecCHHHHHHHHHhhcCCc
Q 001325 571 KQLWLGSFGPEASEAHIRF---QIDRFGPLEHFFFFPIKG---------FALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~---~F~~fGpLe~V~~~~~rg---------fAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
+-+||=.|++.+..+++.+ -|++||.|-.|..++.++ -++|-|+..+||.+|+..-+|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 5568888888866555543 588888999999877442 37999999999999999988853
No 214
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=38.39 E-value=10 Score=42.26 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=6.9
Q ss_pred cchhHHHHHhhhccc
Q 001325 666 QWAKDEILHESYKVV 680 (1100)
Q Consensus 666 ~~~kEELfsE~dkag 680 (1100)
.|.+..|..-++++.
T Consensus 8 iWDDtaLIkaYdkav 22 (264)
T PF06003_consen 8 IWDDTALIKAYDKAV 22 (264)
T ss_dssp -----HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 467777777777654
No 215
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=38.25 E-value=34 Score=38.33 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=52.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
.+--..|||||..=.+.||+|-.=|+.||.+....+ +| ..+++.-+|-|...|.|.+|-+.-+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 344568999999999999999999999887766654 34 7888999999999999999976433
No 216
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.22 E-value=1.1e+02 Score=38.30 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=9.5
Q ss_pred ccccceeccccccCC
Q 001325 1007 QLLQYQWQGALCKSG 1021 (1100)
Q Consensus 1007 ~~~~~qWQG~L~KSG 1021 (1100)
.-.-..||..+.+-+
T Consensus 460 ~~~~~~~~~~~~~~~ 474 (620)
T PRK14954 460 GVDLGSWQGKFMNFT 474 (620)
T ss_pred ccccHhhhhhccccc
Confidence 334578887777544
No 217
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=36.97 E-value=69 Score=37.43 Aligned_cols=12 Identities=17% Similarity=-0.158 Sum_probs=6.4
Q ss_pred CCCCcccccccC
Q 001325 765 GFGSPHTAPFHS 776 (1100)
Q Consensus 765 ~fGei~rf~idf 776 (1100)
+.|++.||-.=|
T Consensus 5 AL~SLlrWGslF 16 (407)
T PF04625_consen 5 ALGSLLRWGSLF 16 (407)
T ss_pred hhhhhhhhhccc
Confidence 345555655544
No 218
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=36.82 E-value=5.6e+02 Score=30.84 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=4.7
Q ss_pred hHHHHHhhhc
Q 001325 669 KDEILHESYK 678 (1100)
Q Consensus 669 kEELfsE~dk 678 (1100)
++.||.++.|
T Consensus 31 R~ALL~DI~K 40 (437)
T KOG4462|consen 31 RNALLGDIQK 40 (437)
T ss_pred hHHHHHHhhh
Confidence 3445554444
No 219
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=36.58 E-value=37 Score=39.83 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=53.9
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcce--------EEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~--------V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
-.++||=.|+..+++.+|.+.|..+|.|.. |+++ .+++=|.|-|+|.--|.+|+...+|+..+
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345778889999999999999999999852 4444 48899999999999999999999998655
No 220
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.06 E-value=1e+02 Score=38.54 Aligned_cols=19 Identities=47% Similarity=0.564 Sum_probs=12.0
Q ss_pred HHHhccCCc--hHHHHHHhhc
Q 001325 86 SLITASRGC--TSVQRIVADL 104 (1100)
Q Consensus 86 ~li~~srgc--~svqri~adl 104 (1100)
+|++.-+|+ |++-|++|..
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 367777766 5666666653
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.66 E-value=10 Score=43.07 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=39.0
Q ss_pred ccHHHHHHHhhccCCcceEEEe-----c----c-------Cce---------EEEEecCHHHHHHHHHhhcCCce
Q 001325 582 ASEAHIRFQIDRFGPLEHFFFF-----P----I-------KGF---------ALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~-----~----~-------rgf---------AFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
-+|+-|+..|+.||.|.+|-+- + + .|| |||.|..-.--+.|+.+|+|...
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 5789999999999999998761 1 1 233 56888888888889999998764
No 222
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.53 E-value=17 Score=43.40 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHhh----chHHHHHHHHHHHH--HHHHHhhcccCCchHHHHHHH----------HHHhccCCchHHHHH
Q 001325 37 PPPLSQDEIQSRRR----NKDEIRSVYECYRR--LKACIAQKDARRLPELEQAYL----------SLITASRGCTSVQRI 100 (1100)
Q Consensus 37 ~~p~~~ee~~~~rr----n~~e~r~v~~~y~r--~k~~~~~~~~~~~~~leq~y~----------~li~~srgc~svqri 100 (1100)
.+++.++=+.++.+ +.+++++=+..||- ||..|.+ -+-+|=+-|. .-..+=-=|||..-+
T Consensus 111 ~~~~D~~WvE~~~~~a~~~le~L~~eLk~yK~n~iKEsiRr----a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv 186 (466)
T KOG0686|consen 111 GYLLDEKWVETNNKKAVLKLEKLDNELKSYKDNLIKESIRR----ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV 186 (466)
T ss_pred ccccchHHHHHhhHHHHHHHHHHHHHHHHhhcchhhHHHHH----HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH
Confidence 45566665555554 45788888888873 6665543 3344555554 222211145554443
Q ss_pred HhhccccccccCchhHhhhhhheeeecccc--ceecccCCCC-cc---hhhh-hhh-hhhccccccccc
Q 001325 101 VADLVPRYALYCPTALEAATEVVIYMHNSS--VALINRGEDA-DG---VAFQ-TAS-ACIFGLGDICRT 161 (1100)
Q Consensus 101 ~adliprya~~cptaleaa~kv~inm~~~s--~a~~~rged~-dg---va~~-ta~-aci~gl~dic~~ 161 (1100)
+= .--...+|.|.|-||+ ++.+++-+-. ++ ++.| ++| -|..||+.+|--
T Consensus 187 In------------m~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lk 243 (466)
T KOG0686|consen 187 IN------------MCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLK 243 (466)
T ss_pred HH------------HHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHH
Confidence 31 1236789999999998 4555655544 11 1111 122 399999999864
No 223
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.09 E-value=58 Score=38.50 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=54.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
+-|-+.|+|-..-+++++|+|.--|..||.+..+.++ | +.+=..++|||++.+...+|---|.--.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 4489999999999999999999999999988888664 3 4455788999999999998877666543
No 224
>PF14650 FAM75: FAM75 family
Probab=33.55 E-value=89 Score=36.96 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=9.5
Q ss_pred eeeecccccccccccccCCCCccc
Q 001325 1027 IYAQREESDICKYTHDISEPAEWP 1050 (1100)
Q Consensus 1027 IYaqRidSDICkyt~t~~Eps~WP 1050 (1100)
+++.+....+.-.+.+..+.-+|+
T Consensus 128 v~~~~~q~~~q~l~~~E~q~LEw~ 151 (373)
T PF14650_consen 128 VSCPTSQNEAQSLIPTEIQHLEWH 151 (373)
T ss_pred CCCCcccCCCcccCchhhhhccch
Confidence 334444333333333333344444
No 225
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=33.38 E-value=26 Score=39.47 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=39.7
Q ss_pred HHHHHhhh-cccccCCceeec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 670 DEILHESY-KVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 670 EELfsE~d-kag~kgPv~f~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
|++|.|+. +.+.+..+.+-+ ..-.+.+++.|..+|+|.+|...|++..-+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~ 136 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc
Confidence 78999999 777666665532 233578999999999999999999997755
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=32.59 E-value=68 Score=37.05 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCccccccccccceEEeccCCCcccHHHHHHHhhccCCcc-eEEEeccCceEEEEecCH
Q 001325 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINI 616 (1100)
Q Consensus 559 g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe-~V~~~~~rgfAFVeF~~i 616 (1100)
|.+++-| +|||||+.++.-.||..++.+-|-.- ++.-.-.+|-||..|-|-
T Consensus 326 ~a~~~~d-------i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTD-------IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccc-------eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 5666777 79999999999999999999887655 444456899999999864
No 227
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=32.43 E-value=61 Score=31.61 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=37.6
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCc--eeecCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv--~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
..|||-+.|..+....+-.-++. +.+.+ .+..+ ..+.+.|-|.++|-|.+|++.|++.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~q--LsdNCGGkVl~v-~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQ--LSDNCGGKVLSV-SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHH--HHHTTT--EEE---TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHH--HhhccCCEEEEE-eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 36899999988777766666654 33333 33344 3588899999999999999999863
No 228
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=31.93 E-value=13 Score=44.06 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=56.3
Q ss_pred ccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhh
Q 001325 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYI 626 (1100)
Q Consensus 557 ~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~L 626 (1100)
|+-+.+|..|=-.-+.++|++|..++-..|+.+.|.+||.+---.++. ...|+-|+|..----+.|.+.+
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc
Confidence 555667888877789999999999999999999999999987555543 6667789999777777776543
No 229
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=31.89 E-value=1.1e+02 Score=39.47 Aligned_cols=18 Identities=50% Similarity=0.822 Sum_probs=12.3
Q ss_pred HHHhccCCc--hHHHHHHhh
Q 001325 86 SLITASRGC--TSVQRIVAD 103 (1100)
Q Consensus 86 ~li~~srgc--~svqri~ad 103 (1100)
+|+..-+|| |++=||+|-
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 367777877 666666664
No 230
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=30.00 E-value=1e+02 Score=38.11 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=54.7
Q ss_pred ccccccccceEE-ecc-CCCcccHHHHHHHh----hccCCcceEEEe----c-cCceEEEEecCHHHHHHHHHhhc--CC
Q 001325 563 AMDIFSASKQLW-LGS-FGPEASEAHIRFQI----DRFGPLEHFFFF----P-IKGFALVEYINIIDAIRAREYIR--NH 629 (1100)
Q Consensus 563 a~dv~~~Sr~LW-VGn-Lg~~vte~dL~~~F----~~fGpLe~V~~~----~-~rgfAFVeF~~i~DAv~A~~~Lq--G~ 629 (1100)
++.|+.+..++. +|. ...+++.-||..+| +-+|=|..+++. + .+.++++.|.+++||.+|+..+. |-
T Consensus 257 ~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~ 336 (555)
T PLN02805 257 SLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGI 336 (555)
T ss_pred EEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCC
Confidence 566666655544 432 22334456787776 468888888874 3 56788999999999999999976 44
Q ss_pred ceeEEEEeec
Q 001325 630 FSWRVKFMDV 639 (1100)
Q Consensus 630 ~~~RI~F~r~ 639 (1100)
.+..+||+|.
T Consensus 337 ~psa~ElmD~ 346 (555)
T PLN02805 337 QVSRVELLDE 346 (555)
T ss_pred CcEEEEEECH
Confidence 5569999986
No 231
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=29.72 E-value=3.4e+02 Score=35.32 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=34.0
Q ss_pred cceEEeccCCCcc-------cHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHH
Q 001325 570 SKQLWLGSFGPEA-------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRA 622 (1100)
Q Consensus 570 Sr~LWVGnLg~~v-------te~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A 622 (1100)
|---||-.|-|+- .|..+..+.++-|==|+|++.|. ||| ||..-|--.-
T Consensus 579 c~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRA-GfA---YRr~F~kF~q 634 (1106)
T KOG0162|consen 579 CQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRA-GFA---YRRAFDKFAQ 634 (1106)
T ss_pred cCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhh-hhH---HHHHHHHHHH
Confidence 3344676665554 46788899999999999999774 777 4555554433
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=27.03 E-value=70 Score=36.98 Aligned_cols=146 Identities=10% Similarity=0.165 Sum_probs=95.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccC-------------ceEEEEecCHHHHHHHHHh----------
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-------------GFALVEYINIIDAIRAREY---------- 625 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~r-------------gfAFVeF~~i~DAv~A~~~---------- 625 (1100)
-+|.|-.-|+-.++.=..+...|.+||+||+|.++... -.-.+-|..-+.+.+=...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999866 5678888887777664432
Q ss_pred -hcCCceeEEEEeec--------c-----C--CCCcc--cccccccccceEEEccCCCcchhHHHHHhhhcccc-cCC--
Q 001325 626 -IRNHFSWRVKFMDV--------G-----L--GTKGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY-KGP-- 684 (1100)
Q Consensus 626 -LqG~~~~RI~F~r~--------~-----~--gsrg~--~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~-kgP-- 684 (1100)
|+-..+ .+.|-.- + + -.... ++=+--+..|.|.|-.= ....+++++.+--.+-. .+.
T Consensus 94 ~L~S~~L-~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESL-TLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred hcCCcce-eEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCce
Confidence 222211 3444321 0 0 00000 11111246888888876 44447777776555541 111
Q ss_pred -----ceeecC------CCCcccccccCCHHHHHHHHHHhhhh
Q 001325 685 -----YMVTDL------SCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 685 -----v~f~Dl------see~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
+.++.- =..+.+.|-|-+.-=|..++.+|+.+
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 111111 13578999999999999999999976
No 233
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=26.44 E-value=3.2e+02 Score=35.47 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHhccCCchHHHHHHhhccccc
Q 001325 86 SLITASRGCTSVQRIVADLVPRY 108 (1100)
Q Consensus 86 ~li~~srgc~svqri~adlipry 108 (1100)
++-.+|-|-++||+| -|+|-+-
T Consensus 127 YIs~vS~~g~kvq~v-kdiiL~s 148 (1106)
T KOG0162|consen 127 YISRVSGGGEKVQHV-KDIILQS 148 (1106)
T ss_pred HHHHhccCCcchhhh-hhHhhcc
Confidence 333455788999985 5776543
No 234
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=26.00 E-value=58 Score=35.99 Aligned_cols=64 Identities=20% Similarity=0.071 Sum_probs=52.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
...+.+|||++--.++.+++..++..-+....+++. | ...++.+++||.+.+.+..+.. |++-.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~ 166 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSE 166 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcc
Confidence 368899999999999999999999988877655442 2 3468999999999999999988 76643
No 235
>PF15449 Retinal: Retinal protein
Probab=25.89 E-value=2.9e+02 Score=37.10 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=6.2
Q ss_pred hhhhhhhhhccC
Q 001325 181 HNVLDFFISSFD 192 (1100)
Q Consensus 181 ~~vltffi~~f~ 192 (1100)
|-.++|++.-||
T Consensus 222 q~mv~fl~l~fe 233 (1287)
T PF15449_consen 222 QPMVSFLLLRFE 233 (1287)
T ss_pred HHHHHHHHHHHH
Confidence 445555555553
No 236
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.83 E-value=1.5e+02 Score=37.16 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHhhhhc
Q 001325 702 TPEEATTAMAHLRQHR 717 (1100)
Q Consensus 702 s~eEA~~Ak~~l~~~r 717 (1100)
+.++-..++..+.+-+
T Consensus 324 s~~~L~~~i~~L~eae 339 (620)
T PRK14948 324 NLERILQWQQHLKGSE 339 (620)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4555555555555544
No 237
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=25.22 E-value=3.5e+02 Score=32.36 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=43.1
Q ss_pred EEeccCCCcccHHHHHHHhhccCC--cceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 573 LWLGSFGPEASEAHIRFQIDRFGP--LEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 573 LWVGnLg~~vte~dL~~~F~~fGp--Le~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
+|||||-=-.|++||.+....-|- +-+++|| .++|||+|-.....-.++-++.|.-+.
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred EEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 799999999999999999887773 3355565 278888888776666666666665543
No 238
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=24.69 E-value=37 Score=41.37 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=49.1
Q ss_pred hhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHHHHh
Q 001325 147 TASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEVFLG 216 (1100)
Q Consensus 147 ta~aci~gl~dic~~ass~a~~s~v~~gicsav~~~vltffi~~f~gkdi~~~~~~~~~~~qd~~e~~~~ 216 (1100)
++.+||.|||-||..+..+.|=.+++-|+-++|+-|.++- -++.+|+-||.++|.+
T Consensus 291 ~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~k--------------L~~~lkvDDpl~~f~~ 346 (500)
T KOG0682|consen 291 LCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANK--------------LKERLKVDDPLDAFAV 346 (500)
T ss_pred hHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHH--------------HHHHhcCCcHHHHHHH
Confidence 5789999999999999999999999999999998887654 3678888999988854
No 239
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=24.61 E-value=3.9e+02 Score=36.73 Aligned_cols=78 Identities=17% Similarity=0.039 Sum_probs=40.6
Q ss_pred echhhhhccCCchHHHHhhhc-ccCC-------Cchhh-hhhhH----HHHHhHHHHHHhcC----chHHHHHHH---Hh
Q 001325 199 TVDKEITKMLDSDEVFLGLKK-KFSD-------EDESS-LIKLS----KFRLLSLLQIFFSS----PKNLLAACF---EL 258 (1100)
Q Consensus 199 ~~~~~~~~~qd~~e~~~~lk~-~~~~-------~~~~~-~~~l~----~~~~l~ll~if~~~----p~~~l~acf---~l 258 (1100)
+|.+-.++.+||..++..++. |+-+ +-.-. +.||- .++..-|-+||... +-++|..|. ++
T Consensus 1085 ~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~ 1164 (1958)
T KOG0391|consen 1085 LGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEG 1164 (1958)
T ss_pred hccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhh
Confidence 467777888888888887753 3322 11111 12332 23345566677653 677777774 33
Q ss_pred hCccccccccccceeeec
Q 001325 259 FNPSVLEGIHKGQYFFSQ 276 (1100)
Q Consensus 259 ~~s~~~e~~~~g~~~l~q 276 (1100)
+..--.|.+.+-.-|+.+
T Consensus 1165 i~p~~~ea~~e~~l~~~r 1182 (1958)
T KOG0391|consen 1165 IVPWRSEAPSELMLTLCR 1182 (1958)
T ss_pred hccccccCchhhhhhHHH
Confidence 333333444443333333
No 240
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=24.41 E-value=1.8e+02 Score=30.73 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=37.7
Q ss_pred HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 584 EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.++|.+.|..||.+.=|+|.. +--+|.|++-+-|.+|+ .|+|..++
T Consensus 50 ~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 50 MDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp HHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEET
T ss_pred HHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEEC
Confidence 457889999999888777766 57799999999999996 58888776
No 241
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=23.96 E-value=75 Score=35.41 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=55.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCcee-e---cCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
--.|-|-|+...++-|+|--=|.+.|.+|++-| . .-+.++.+||-|..-.||.-||+.|.+.-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ 79 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAV 79 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhccee
Confidence 456889999999999999999999999998855 2 37789999999999999999999999864
No 242
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=23.85 E-value=2.2e+02 Score=38.06 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=3.4
Q ss_pred hhhhhhh
Q 001325 1092 VSFLIHL 1098 (1100)
Q Consensus 1092 ~~dfi~y 1098 (1100)
|.+||.|
T Consensus 172 FThlI~k 178 (1228)
T PRK12270 172 FTHLIGY 178 (1228)
T ss_pred HHHHHHH
Confidence 5555544
No 243
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=23.31 E-value=2.6e+02 Score=29.36 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCCCCHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc--------CCchHHHHHHHHHHhcc
Q 001325 37 PPPLSQDEIQSRRRNKDEIRSVYECYRRLKACIAQKDA--------RRLPELEQAYLSLITAS 91 (1100)
Q Consensus 37 ~~p~~~ee~~~~rrn~~e~r~v~~~y~r~k~~~~~~~~--------~~~~~leq~y~~li~~s 91 (1100)
||--|+++|.+-+|.-+.|..+.|...-||..|..++- |.|-+|-|.-.+||.+=
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl 89 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSL 89 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 55688999999999999999999999999999999985 47889999999988764
No 244
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.26 E-value=71 Score=37.05 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=39.0
Q ss_pred hHHHHHhhhcccccCCceee---cCCCCcc--cccccCCHHHHHHHHHHhhhhccc
Q 001325 669 KDEILHESYKVVYKGPYMVT---DLSCEGA--LLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 669 kEELfsE~dkag~kgPv~f~---Dlsee~a--LLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+|+..|+.+.+..+.+.+. .+.+..+ ++|||...++|+.|..-|+|+--|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 45677788999988887442 3444444 589999999999999999986644
No 245
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=22.85 E-value=1.9e+02 Score=34.87 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=49.1
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEE----EeccCceEEEEecCHHHHHHHHHhhcCCceeEEEEeecc
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF----FFPIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVG 640 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~----~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~r~~ 640 (1100)
-+|+=||.+..=+| ...+|..++.|-.=| +..+-..||..|..+..-.++...=.|+-++|.-.-|.|
T Consensus 221 Ltcnd~iS~FEFDv----FTRLFqPw~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlG 292 (563)
T KOG1785|consen 221 LTCNDFISNFEFDV----FTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLG 292 (563)
T ss_pred cccccceeeehhhh----HHHhhccHHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHHhcCCCceEEeeccCccc
Confidence 46666666655444 356888888876444 344667799999888888888888889888888877763
No 246
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=22.30 E-value=8.3e+02 Score=30.53 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=22.8
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCccC-CCcc
Q 001325 883 LPPNSSWDAGGSNHQLPSNPISPNVVP-NTFH 913 (1100)
Q Consensus 883 ~~P~~~wD~~~~Nh~lpss~~sP~vmP-~~f~ 913 (1100)
++++.-||.+.+.|.-|+-.++-..|| ++|.
T Consensus 154 pp~~~~wd~~a~~~~~p~~a~~~~~~~~~~~p 185 (605)
T KOG4217|consen 154 PPHSDLWDATAPGHFNPSQALENDFMPNPRLP 185 (605)
T ss_pred CCCCccccccCccccCchhhhhcCCCCcccCc
Confidence 678999999988887775555666677 4444
No 247
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=21.85 E-value=30 Score=39.81 Aligned_cols=10 Identities=20% Similarity=0.571 Sum_probs=2.4
Q ss_pred CCCCccCCCC
Q 001325 817 SFQSNWSVSG 826 (1100)
Q Consensus 817 ~~~a~w~~~G 826 (1100)
+.|..|+.-|
T Consensus 204 ttGl~WN~~G 213 (312)
T PF01213_consen 204 TTGLSWNPKG 213 (312)
T ss_dssp TTS----TTS
T ss_pred ccCcccCCcc
Confidence 3344444444
No 248
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=21.44 E-value=31 Score=38.63 Aligned_cols=8 Identities=13% Similarity=0.546 Sum_probs=0.0
Q ss_pred ccccceec
Q 001325 1007 QLLQYQWQ 1014 (1100)
Q Consensus 1007 ~~~~~qWQ 1014 (1100)
.++.|.|=
T Consensus 229 ~~~lmswy 236 (264)
T PF06003_consen 229 KSMLMSWY 236 (264)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44567773
No 249
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=21.04 E-value=1.9e+03 Score=30.58 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHhcCch--HHHHHH--HHhhCccccccccc-cceeeecceee
Q 001325 234 KFRLLSLLQIFFSSPK--NLLAAC--FELFNPSVLEGIHK-GQYFFSQITSR 280 (1100)
Q Consensus 234 ~~~~l~ll~if~~~p~--~~l~ac--f~l~~s~~~e~~~~-g~~~l~q~t~~ 280 (1100)
-+|.+.+=..|++-.. |||-.| |.+--.+.+--.+. -++-..||-+-
T Consensus 522 a~R~~t~Rd~Fl~r~~vmnLlm~~p~~d~~~Pa~pai~Kp~PlWTGkQifsl 573 (1605)
T KOG0260|consen 522 AVRKMTKRDVFLNRAQVMNLLMYVPDWDGPPPAKPAILKPKPLWTGKQIFSL 573 (1605)
T ss_pred HHHHHhhHhhhhcHHHHHHHHhhccccCCCCCCCcccCCCCcccchhhheee
Confidence 3444444445554432 455555 44433332222222 34444444443
No 250
>PF15324 TALPID3: Hedgehog signalling target
Probab=20.84 E-value=1.4e+03 Score=31.13 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=9.0
Q ss_pred cCceEEEEecCH
Q 001325 605 IKGFALVEYINI 616 (1100)
Q Consensus 605 ~rgfAFVeF~~i 616 (1100)
..+.|.|+-++.
T Consensus 684 kpNvAviemksE 695 (1252)
T PF15324_consen 684 KPNVAVIEMKSE 695 (1252)
T ss_pred CCCEEEEEeccc
Confidence 468888888765
No 251
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=20.12 E-value=55 Score=42.14 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=52.3
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCC
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNH 629 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~ 629 (1100)
--.|.|-|.+...|+++|+.++..+|...++++. .++|-|||.|.+..+|-.++-.+++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhh
Confidence 4578999999999999999999999999988753 27899999999999999887666653
No 252
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=20.10 E-value=3.6e+02 Score=24.74 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.1
Q ss_pred eEEeccCCCcccHHHHHHHhhcc----CCcceEEEeccCceEEEEecCHHHHHHHHHhh
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRF----GPLEHFFFFPIKGFALVEYINIIDAIRAREYI 626 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~f----GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L 626 (1100)
.|.|-++ .+.+.+||+.-|..| ++..==|+ +-.-|=|-|.+.++|.+|+.+|
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWI--dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWI--DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEe--cCCcEEEEECCHHHHHHHHHcC
Confidence 4556565 458899999999999 55433344 3356789999999999999876
Done!