Query 001325
Match_columns 1100
No_of_seqs 265 out of 269
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 22:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxl_A Paraneoplastic encephal 99.8 2.5E-20 8.6E-25 174.4 13.7 142 569-719 1-156 (167)
2 3nmr_A Cugbp ELAV-like family 99.8 4.5E-20 1.5E-24 174.3 13.7 143 568-718 1-161 (175)
3 3md3_A Nuclear and cytoplasmic 99.8 4.8E-20 1.6E-24 172.3 13.0 142 571-719 1-155 (166)
4 1b7f_A Protein (SXL-lethal pro 99.8 7.3E-20 2.5E-24 172.3 13.4 141 569-718 2-156 (168)
5 4f02_A Polyadenylate-binding p 99.8 1.3E-19 4.3E-24 181.6 11.3 145 568-719 13-169 (213)
6 3tyt_A Heterogeneous nuclear r 99.8 5.6E-19 1.9E-23 178.7 15.6 151 569-719 3-191 (205)
7 2g4b_A Splicing factor U2AF 65 99.8 4.5E-19 1.5E-23 168.0 12.0 142 568-719 2-162 (172)
8 2qfj_A FBP-interacting repress 99.8 2.4E-19 8.2E-24 175.6 10.4 155 565-719 23-193 (216)
9 1qm9_A Polypyrimidine tract-bi 99.8 1.3E-18 4.3E-23 170.0 15.0 149 570-719 3-184 (198)
10 2adc_A Polypyrimidine tract-bi 99.8 1.3E-18 4.6E-23 175.9 15.1 151 568-719 32-215 (229)
11 2yh0_A Splicing factor U2AF 65 99.8 6.4E-19 2.2E-23 170.4 11.9 150 569-719 3-182 (198)
12 3pgw_A U1-A; protein-RNA compl 99.8 1.7E-18 5.7E-23 178.2 14.9 151 567-719 6-270 (282)
13 3sde_A Paraspeckle component 1 99.8 1.6E-18 5.4E-23 178.9 13.9 136 565-715 17-159 (261)
14 3smz_A Protein raver-1, ribonu 99.8 1.2E-18 4.2E-23 179.3 13.0 197 567-787 19-230 (284)
15 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.8E-23 167.8 11.9 141 568-712 11-165 (196)
16 2cjk_A Nuclear polyadenylated 99.8 7.4E-19 2.5E-23 165.7 8.7 139 568-717 1-152 (167)
17 1fje_B Nucleolin RBD12, protei 99.8 3.2E-18 1.1E-22 163.4 13.1 143 568-719 11-162 (175)
18 2ghp_A U4/U6 snRNA-associated 99.7 1.9E-17 6.5E-22 171.1 13.0 190 568-776 39-245 (292)
19 3smz_A Protein raver-1, ribonu 99.7 5.7E-17 2E-21 166.9 14.4 157 557-719 82-252 (284)
20 2ghp_A U4/U6 snRNA-associated 99.7 7.2E-17 2.4E-21 166.8 12.3 149 568-719 115-279 (292)
21 4f25_A Polyadenylate-binding p 99.6 3E-16 1E-20 144.7 8.8 100 570-670 5-112 (115)
22 2cpj_A Non-POU domain-containi 99.6 6.5E-15 2.2E-19 131.1 8.7 76 564-639 9-88 (99)
23 2hvz_A Splicing factor, argini 99.6 7.8E-15 2.7E-19 130.8 8.8 92 571-664 1-100 (101)
24 3r27_A HnRNP L, heterogeneous 99.5 1.1E-14 3.7E-19 135.3 9.3 77 563-639 14-96 (100)
25 1wex_A Hypothetical protein (r 99.5 1.5E-14 5.2E-19 133.4 9.6 78 563-640 8-91 (104)
26 2cq1_A PTB-like protein L; RRM 99.5 3.5E-14 1.2E-18 130.5 9.3 77 564-640 9-91 (101)
27 2cq2_A Hypothetical protein LO 99.5 2E-14 6.7E-19 136.4 7.8 64 568-631 23-88 (114)
28 1x4d_A Matrin 3; structural ge 99.5 1.8E-14 6.3E-19 133.3 7.4 71 569-639 14-91 (102)
29 4fxv_A ELAV-like protein 1; RN 99.5 3.4E-14 1.2E-18 128.7 8.7 74 566-639 15-98 (99)
30 2ytc_A PRE-mRNA-splicing facto 99.5 5.8E-14 2E-18 121.0 8.9 70 568-637 10-84 (85)
31 1why_A Hypothetical protein ri 99.5 6.8E-14 2.3E-18 124.2 9.0 73 567-639 14-92 (97)
32 1sjq_A Polypyrimidine tract-bi 99.5 4E-14 1.4E-18 132.4 7.1 72 568-639 14-91 (105)
33 2ad9_A Polypyrimidine tract-bi 99.5 7.4E-14 2.5E-18 132.9 9.1 73 567-639 28-106 (119)
34 1x5s_A Cold-inducible RNA-bind 99.5 1.9E-13 6.5E-18 121.8 10.9 78 563-640 5-92 (102)
35 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.5E-13 5.3E-18 122.8 10.4 76 565-640 10-93 (103)
36 1x4f_A Matrin 3; structural ge 99.5 5.4E-14 1.8E-18 132.7 7.4 73 567-639 22-101 (112)
37 2la4_A Nuclear and cytoplasmic 99.5 6.6E-14 2.3E-18 124.8 7.6 70 569-638 26-99 (101)
38 2x1f_A MRNA 3'-END-processing 99.5 1.1E-13 3.7E-18 122.6 8.7 71 569-639 1-81 (96)
39 3md1_A Nuclear and cytoplasmic 99.5 1.2E-13 3.9E-18 118.4 8.3 70 570-639 1-80 (83)
40 2dnz_A Probable RNA-binding pr 99.5 2.3E-13 7.7E-18 119.6 10.3 73 568-640 3-85 (95)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.3E-13 4.3E-18 118.6 8.5 70 568-637 5-84 (85)
42 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.5E-13 5.1E-18 118.6 8.7 72 568-639 4-85 (87)
43 2wbr_A GW182, gawky, LD47780P; 99.5 7.6E-14 2.6E-18 128.1 7.1 68 570-637 7-78 (89)
44 1x4g_A Nucleolysin TIAR; struc 99.4 1.3E-13 4.4E-18 125.0 8.5 73 568-640 23-99 (109)
45 2ywk_A Putative RNA-binding pr 99.4 1.3E-13 4.5E-18 121.0 8.2 72 568-639 14-94 (95)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.4 1.3E-13 4.4E-18 122.8 8.2 76 565-640 7-92 (102)
47 2dnq_A RNA-binding protein 4B; 99.4 2.4E-13 8.2E-18 119.1 9.7 71 568-640 6-80 (90)
48 2cqc_A Arginine/serine-rich sp 99.4 1.5E-13 5.1E-18 120.4 8.3 73 567-639 12-94 (95)
49 1x5t_A Splicing factor 3B subu 99.4 2.1E-13 7.1E-18 120.0 9.2 73 568-640 3-86 (96)
50 3s8s_A Histone-lysine N-methyl 99.4 1.6E-13 5.4E-18 126.9 8.6 72 568-639 4-85 (110)
51 2kvi_A Nuclear polyadenylated 99.4 2.3E-13 7.9E-18 121.0 9.3 75 564-640 4-83 (96)
52 2cph_A RNA binding motif prote 99.4 2.6E-13 9E-18 121.5 9.5 74 567-640 12-97 (107)
53 2cpf_A RNA binding motif prote 99.4 1.9E-13 6.4E-18 121.0 8.3 73 568-640 3-88 (98)
54 1whx_A Hypothetical protein ri 99.4 1.9E-13 6.5E-18 125.7 8.6 71 569-639 9-83 (111)
55 2dgt_A RNA-binding protein 30; 99.4 3.7E-13 1.3E-17 118.4 9.7 71 568-640 8-82 (92)
56 2cq3_A RNA-binding protein 9; 99.4 4.3E-13 1.5E-17 119.9 10.2 74 567-640 12-93 (103)
57 2xnq_A Nuclear polyadenylated 99.4 3.5E-13 1.2E-17 121.1 9.4 72 566-639 18-94 (97)
58 2dnh_A Bruno-like 5, RNA bindi 99.4 3E-13 1E-17 121.1 8.9 72 568-639 13-96 (105)
59 1x4a_A Splicing factor, argini 99.4 4E-13 1.4E-17 121.5 9.8 73 568-640 20-99 (109)
60 2dnp_A RNA-binding protein 14; 99.4 3.7E-13 1.3E-17 117.9 9.3 71 568-640 7-81 (90)
61 3lqv_A PRE-mRNA branch site pr 99.4 3.7E-13 1.3E-17 122.5 9.6 96 569-681 7-109 (115)
62 4a8x_A RNA-binding protein wit 99.4 3.1E-13 1E-17 116.6 8.4 71 569-639 3-84 (88)
63 1u6f_A Tcubp1, RNA-binding pro 99.4 2.9E-13 1E-17 127.0 9.0 73 568-640 40-122 (139)
64 2dgx_A KIAA0430 protein; RRM d 99.4 2.7E-13 9.2E-18 120.9 8.3 73 567-639 6-89 (96)
65 2d9p_A Polyadenylate-binding p 99.4 2.7E-13 9.3E-18 121.2 8.3 73 568-640 13-93 (103)
66 2e5h_A Zinc finger CCHC-type a 99.4 3.6E-13 1.2E-17 118.0 8.8 71 567-637 13-93 (94)
67 2dgp_A Bruno-like 4, RNA bindi 99.4 3.4E-13 1.2E-17 120.9 8.7 73 568-640 11-96 (106)
68 2div_A TRNA selenocysteine ass 99.4 4.2E-13 1.4E-17 118.9 9.1 72 568-639 7-93 (99)
69 2fy1_A RNA-binding motif prote 99.4 5.3E-13 1.8E-17 123.7 10.0 73 568-640 5-86 (116)
70 2dgv_A HnRNP M, heterogeneous 99.4 3.6E-13 1.2E-17 117.7 8.3 73 568-640 6-86 (92)
71 2cqh_A IGF-II mRNA-binding pro 99.4 2.2E-13 7.5E-18 119.8 6.9 72 568-640 6-83 (93)
72 1fjc_A Nucleolin RBD2, protein 99.4 2.9E-13 9.8E-18 119.4 7.7 84 557-640 3-91 (96)
73 1p27_B RNA-binding protein 8A; 99.4 5.2E-13 1.8E-17 119.7 9.4 73 567-639 20-102 (106)
74 2la6_A RNA-binding protein FUS 99.4 4.8E-13 1.6E-17 119.1 9.0 70 568-637 11-98 (99)
75 1whw_A Hypothetical protein ri 99.4 3.8E-13 1.3E-17 119.2 8.2 73 568-640 6-88 (99)
76 2err_A Ataxin-2-binding protei 99.4 4.6E-13 1.6E-17 122.4 8.9 72 568-639 27-106 (109)
77 2cpe_A RNA-binding protein EWS 99.4 6.8E-13 2.3E-17 120.4 9.9 82 559-640 4-103 (113)
78 2dgo_A Cytotoxic granule-assoc 99.4 4.4E-13 1.5E-17 122.0 8.7 73 568-640 13-95 (115)
79 2e5i_A Heterogeneous nuclear r 99.4 7E-13 2.4E-17 126.9 10.4 75 565-639 18-101 (124)
80 1nu4_A U1A RNA binding domain; 99.4 3.9E-13 1.3E-17 118.5 8.0 73 567-639 5-88 (97)
81 1x4e_A RNA binding motif, sing 99.4 1.3E-13 4.5E-18 119.1 4.8 65 568-632 3-73 (85)
82 2do0_A HnRNP M, heterogeneous 99.4 5.8E-13 2E-17 120.8 9.2 77 563-639 8-93 (114)
83 2jvo_A Nucleolar protein 3; nu 99.4 4.8E-13 1.6E-17 122.7 8.7 70 568-639 29-102 (108)
84 2do4_A Squamous cell carcinoma 99.4 5.3E-13 1.8E-17 118.7 8.5 72 568-639 15-95 (100)
85 3ex7_B RNA-binding protein 8A; 99.4 7.4E-13 2.5E-17 122.3 9.6 77 564-640 16-102 (126)
86 1wf1_A RNA-binding protein RAL 99.4 8E-13 2.7E-17 120.0 9.6 71 567-639 24-99 (110)
87 2dgs_A DAZ-associated protein 99.4 7.8E-13 2.7E-17 117.5 9.1 72 568-640 8-89 (99)
88 2lxi_A RNA-binding protein 10; 99.4 2.8E-13 9.6E-18 120.6 6.2 70 570-639 1-82 (91)
89 2e5j_A Methenyltetrahydrofolat 99.4 7.1E-13 2.4E-17 117.9 8.8 72 568-639 17-93 (97)
90 2dis_A Unnamed protein product 99.4 5E-13 1.7E-17 120.3 7.8 72 569-640 7-92 (109)
91 1x5o_A RNA binding motif, sing 99.4 8.1E-13 2.8E-17 120.1 9.1 72 568-639 23-111 (114)
92 2cq0_A Eukaryotic translation 99.4 5E-13 1.7E-17 119.5 7.5 73 568-640 13-95 (103)
93 2dgu_A Heterogeneous nuclear r 99.4 6E-13 2E-17 119.5 8.0 72 567-640 8-83 (103)
94 1p1t_A Cleavage stimulation fa 99.4 4.6E-13 1.6E-17 119.4 7.3 72 568-639 6-87 (104)
95 1oo0_B CG8781-PA, drosophila Y 99.4 8.9E-13 3E-17 119.2 9.2 72 568-639 24-105 (110)
96 3tht_A Alkylated DNA repair pr 99.4 4E-13 1.4E-17 147.8 8.3 117 567-714 15-133 (345)
97 2cpz_A CUG triplet repeat RNA- 99.4 7.9E-13 2.7E-17 120.6 8.8 73 568-640 23-105 (115)
98 2dnm_A SRP46 splicing factor; 99.4 6.4E-13 2.2E-17 118.8 7.9 72 568-639 11-92 (103)
99 2hzc_A Splicing factor U2AF 65 99.4 6.9E-13 2.4E-17 114.5 7.7 70 568-638 4-86 (87)
100 2cpd_A Apobec-1 stimulating pr 99.4 1E-12 3.5E-17 117.0 8.9 74 565-640 10-89 (99)
101 1x4h_A RNA-binding protein 28; 99.4 8.7E-13 3E-17 118.9 8.5 73 567-639 12-100 (111)
102 2khc_A Testis-specific RNP-typ 99.4 5.5E-13 1.9E-17 121.9 7.3 70 568-637 38-117 (118)
103 2ek1_A RNA-binding protein 12; 99.4 4E-13 1.4E-17 118.0 5.9 71 569-639 14-94 (95)
104 1x5p_A Negative elongation fac 99.4 8.8E-13 3E-17 117.2 8.2 70 568-639 13-86 (97)
105 3ulh_A THO complex subunit 4; 99.4 1.2E-12 4E-17 117.6 8.8 71 567-637 26-105 (107)
106 1x5u_A Splicing factor 3B subu 99.4 1.6E-12 5.4E-17 116.4 9.4 73 568-640 13-95 (105)
107 2a3j_A U1 small nuclear ribonu 99.4 1E-12 3.5E-17 125.4 8.6 72 568-639 27-109 (127)
108 2krb_A Eukaryotic translation 99.4 8E-13 2.7E-17 114.0 6.8 63 570-632 1-73 (81)
109 2kt5_A RNA and export factor-b 99.4 2.1E-12 7.1E-17 119.6 10.1 74 566-639 31-113 (124)
110 2jrs_A RNA-binding protein 39; 99.4 1.1E-12 3.6E-17 120.2 8.0 72 568-639 24-105 (108)
111 2i2y_A Fusion protein consists 99.4 1.4E-12 4.9E-17 124.3 9.0 74 566-639 69-147 (150)
112 3zzy_A Polypyrimidine tract-bi 99.4 1.4E-12 4.7E-17 126.4 9.0 69 571-639 29-105 (130)
113 2dhg_A TRNA selenocysteine ass 99.3 7.4E-13 2.5E-17 118.3 6.5 72 568-639 7-89 (104)
114 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 1.3E-12 4.3E-17 121.7 8.3 66 567-632 60-131 (140)
115 2cpi_A CCR4-NOT transcription 99.3 7.4E-13 2.5E-17 121.1 6.6 72 569-640 14-101 (111)
116 1x4c_A Splicing factor, argini 99.3 1.9E-12 6.6E-17 117.6 9.2 71 568-639 13-92 (108)
117 3ucg_A Polyadenylate-binding p 99.3 1.3E-12 4.6E-17 113.1 7.6 70 569-639 5-84 (89)
118 1sjr_A Polypyrimidine tract-bi 99.3 1.2E-12 4E-17 131.4 8.2 71 570-640 46-124 (164)
119 2lkz_A RNA-binding protein 5; 99.3 1.4E-12 4.8E-17 118.5 7.7 71 569-639 8-94 (95)
120 2cqd_A RNA-binding region cont 99.3 2.6E-12 9E-17 117.3 9.5 72 568-640 15-96 (116)
121 2kxn_B Transformer-2 protein h 99.3 1.4E-12 4.8E-17 123.5 7.2 72 568-639 44-125 (129)
122 1wi8_A EIF-4B, eukaryotic tran 99.3 2.2E-12 7.7E-17 115.7 8.1 71 568-640 13-94 (104)
123 1wg1_A KIAA1579 protein, homol 99.3 2.2E-12 7.7E-17 113.0 7.6 70 569-639 4-77 (88)
124 1h2v_Z 20 kDa nuclear CAP bind 99.3 3.8E-12 1.3E-16 122.0 9.7 76 565-640 34-119 (156)
125 2cpx_A Hypothetical protein FL 99.3 2.4E-12 8.3E-17 116.9 7.8 73 568-640 23-105 (115)
126 2cqp_A RNA-binding protein 12; 99.3 1.6E-12 5.4E-17 115.0 6.3 71 568-638 13-93 (98)
127 3p5t_L Cleavage and polyadenyl 99.3 1.5E-12 5.2E-17 114.5 5.9 69 571-639 2-82 (90)
128 2jvr_A Nucleolar protein 3; RN 99.3 2.6E-12 8.9E-17 120.2 7.8 70 569-638 27-103 (111)
129 3ns6_A Eukaryotic translation 99.3 2.4E-12 8.3E-17 115.9 6.8 70 569-638 5-91 (100)
130 2ki2_A SS-DNA binding protein 99.3 1.7E-12 6E-17 113.1 5.5 68 571-639 2-79 (90)
131 2jwn_A Embryonic polyadenylate 99.3 2.6E-12 9E-17 118.3 7.0 71 568-639 34-114 (124)
132 2cq4_A RNA binding motif prote 99.3 2.4E-12 8.1E-17 117.3 6.5 71 568-639 23-103 (114)
133 2bz2_A Negative elongation fac 99.3 5.2E-12 1.8E-16 118.6 8.9 71 568-640 37-111 (121)
134 1s79_A Lupus LA protein; RRM, 99.3 4.4E-12 1.5E-16 116.2 7.9 68 569-637 10-86 (103)
135 2kn4_A Immunoglobulin G-bindin 99.3 6.2E-12 2.1E-16 120.1 9.2 75 566-640 66-150 (158)
136 2dng_A Eukaryotic translation 99.3 6.2E-12 2.1E-16 112.7 8.6 71 568-640 13-93 (103)
137 1fj7_A Nucleolin RBD1, protein 99.3 8.3E-12 2.8E-16 111.2 9.3 73 567-640 14-95 (101)
138 2nlw_A Eukaryotic translation 99.3 3.3E-12 1.1E-16 115.8 6.8 64 568-631 13-86 (105)
139 3egn_A RNA-binding protein 40; 99.3 3.4E-12 1.2E-16 120.7 7.0 73 567-639 42-129 (143)
140 2m2b_A RNA-binding protein 10; 99.3 2.8E-12 9.6E-17 120.4 6.0 72 568-640 21-108 (131)
141 3s7r_A Heterogeneous nuclear r 99.3 7.7E-12 2.7E-16 108.4 8.2 62 568-630 9-76 (87)
142 2fc9_A NCL protein; structure 99.3 4.3E-12 1.5E-16 113.1 6.7 73 568-640 13-91 (101)
143 2rs2_A Musashi-1, RNA-binding 99.3 5.9E-12 2E-16 115.2 7.7 76 563-639 18-103 (109)
144 2j76_E EIF-4B, EIF4B, eukaryot 99.3 2.6E-12 9E-17 115.3 5.2 71 567-639 16-97 (100)
145 3nmr_A Cugbp ELAV-like family 99.3 8.5E-12 2.9E-16 117.8 8.9 70 569-638 94-175 (175)
146 3n9u_C Cleavage and polyadenyl 99.3 6.1E-12 2.1E-16 123.2 8.0 72 568-639 53-136 (156)
147 2mss_A Protein (musashi1); RNA 99.3 5.6E-12 1.9E-16 106.5 6.8 60 572-632 1-66 (75)
148 2lea_A Serine/arginine-rich sp 99.3 5.9E-12 2E-16 119.9 7.6 73 568-640 45-127 (135)
149 1uaw_A Mouse-musashi-1; RNP-ty 99.3 5.6E-12 1.9E-16 106.5 6.6 60 571-631 1-66 (77)
150 2dh8_A DAZ-associated protein 99.3 4.3E-12 1.5E-16 113.8 6.1 72 567-639 13-94 (105)
151 3d2w_A TAR DNA-binding protein 99.3 9.6E-12 3.3E-16 110.5 8.2 59 568-630 9-68 (89)
152 1x4b_A Heterogeneous nuclear r 99.3 9.3E-12 3.2E-16 113.7 8.2 72 568-640 25-106 (116)
153 1rk8_A CG8781-PA, CG8781-PA pr 99.2 1E-11 3.5E-16 120.8 8.7 72 568-639 70-151 (165)
154 3u1l_A PRE-mRNA-splicing facto 99.2 8.1E-12 2.8E-16 131.6 8.6 72 568-639 132-228 (240)
155 3beg_B Splicing factor, argini 99.2 6.7E-12 2.3E-16 115.9 6.7 63 569-632 15-77 (115)
156 2e5g_A U6 snRNA-specific termi 99.2 8.3E-12 2.8E-16 110.4 7.0 70 568-638 6-80 (94)
157 2cqg_A TDP-43, TAR DNA-binding 99.2 1.2E-11 4.2E-16 110.5 8.1 72 567-639 12-92 (103)
158 1wf0_A TDP-43, TAR DNA-binding 99.2 9.4E-12 3.2E-16 108.6 7.2 55 568-622 3-58 (88)
159 2cpy_A RNA-binding protein 12; 99.2 1.5E-11 5E-16 113.0 8.3 73 565-638 10-92 (114)
160 3md3_A Nuclear and cytoplasmic 99.2 1.6E-11 5.4E-16 114.8 8.5 70 569-638 86-165 (166)
161 2e44_A Insulin-like growth fac 99.2 2.2E-11 7.4E-16 107.4 8.7 72 568-639 13-91 (96)
162 1qm9_A Polypyrimidine tract-bi 99.2 2.5E-11 8.6E-16 118.5 9.8 75 566-640 116-197 (198)
163 2fc8_A NCL protein; structure 99.2 2.1E-11 7.3E-16 108.5 8.5 73 568-640 13-92 (102)
164 2dnl_A Cytoplasmic polyadenyla 99.2 9.2E-12 3.1E-16 114.4 6.3 62 568-630 6-79 (114)
165 2dgw_A Probable RNA-binding pr 99.2 3.2E-11 1.1E-15 105.5 8.9 70 568-639 8-86 (91)
166 1iqt_A AUF1, heterogeneous nuc 99.2 1.3E-11 4.4E-16 104.1 6.0 59 572-631 1-65 (75)
167 1wez_A HnRNP H', FTP-3, hetero 99.2 4.4E-11 1.5E-15 108.9 9.5 71 567-639 12-91 (102)
168 2lcw_A RNA-binding protein FUS 98.8 1.6E-12 5.6E-17 119.0 0.0 73 568-640 5-95 (116)
169 2qfj_A FBP-interacting repress 99.2 3.2E-11 1.1E-15 118.1 8.9 73 567-639 122-204 (216)
170 3pgw_A U1-A; protein-RNA compl 99.2 3.3E-11 1.1E-15 124.0 9.3 75 564-638 201-281 (282)
171 1fxl_A Paraneoplastic encephal 99.2 3.9E-11 1.3E-15 112.2 8.9 64 569-632 87-156 (167)
172 2adc_A Polypyrimidine tract-bi 99.2 3.9E-11 1.3E-15 121.4 9.4 76 565-640 146-228 (229)
173 1wel_A RNA-binding protein 12; 99.2 1.8E-11 6.3E-16 113.7 6.2 64 568-632 23-92 (124)
174 2xs2_A Deleted in azoospermia- 99.2 8.6E-12 2.9E-16 111.3 3.7 68 569-637 8-83 (102)
175 2f3j_A RNA and export factor b 99.2 5.7E-11 2E-15 118.3 9.9 73 567-639 85-166 (177)
176 2g4b_A Splicing factor U2AF 65 99.2 3.4E-11 1.2E-15 114.0 7.7 68 570-637 94-171 (172)
177 2yh0_A Splicing factor U2AF 65 99.2 4.6E-11 1.6E-15 115.5 8.0 72 568-639 112-193 (198)
178 1b7f_A Protein (SXL-lethal pro 99.1 7.8E-11 2.7E-15 110.9 8.9 63 569-631 88-156 (168)
179 3q2s_C Cleavage and polyadenyl 99.1 3.9E-11 1.3E-15 123.9 7.3 71 569-639 67-149 (229)
180 4f02_A Polyadenylate-binding p 99.1 5.9E-11 2E-15 118.9 8.4 72 568-639 101-180 (213)
181 2db1_A Heterogeneous nuclear r 99.1 6E-11 2.1E-15 110.2 7.3 64 568-632 15-86 (118)
182 1wg5_A Heterogeneous nuclear r 99.1 1.5E-10 5E-15 104.8 8.6 64 568-632 13-82 (104)
183 2lmi_A GRSF-1, G-rich sequence 99.1 6.7E-11 2.3E-15 107.5 5.9 64 568-632 9-80 (107)
184 2cjk_A Nuclear polyadenylated 99.1 9.2E-11 3.1E-15 110.6 6.8 71 568-639 85-165 (167)
185 3tyt_A Heterogeneous nuclear r 99.1 1.2E-10 4.2E-15 117.9 8.1 67 565-631 118-190 (205)
186 2pe8_A Splicing factor 45; RRM 99.1 2.3E-10 8E-15 105.7 9.0 72 568-639 6-93 (105)
187 2hgl_A HNRPF protein, heteroge 99.1 1.2E-10 4.2E-15 112.4 7.3 63 569-632 43-113 (136)
188 3pgw_S U1-70K; protein-RNA com 99.1 1.4E-10 4.7E-15 130.5 8.5 72 568-639 100-181 (437)
189 1l3k_A Heterogeneous nuclear r 99.1 2.4E-10 8.1E-15 110.4 8.2 72 568-640 102-183 (196)
190 1fje_B Nucleolin RBD12, protei 99.0 1.4E-10 4.9E-15 110.5 6.2 71 569-639 98-173 (175)
191 2dit_A HIV TAT specific factor 99.0 4.6E-10 1.6E-14 103.0 9.2 72 568-639 13-101 (112)
192 2diu_A KIAA0430 protein; struc 99.0 1.9E-10 6.3E-15 107.2 6.4 69 567-639 5-83 (96)
193 3sde_A Paraspeckle component 1 99.0 3.6E-10 1.2E-14 116.7 8.2 83 557-639 83-178 (261)
194 2hgn_A Heterogeneous nuclear r 99.0 2.4E-10 8.2E-15 110.9 5.5 63 568-632 44-111 (139)
195 2dnn_A RNA-binding protein 12; 99.0 5.7E-10 2E-14 103.8 7.6 63 568-632 14-81 (109)
196 2dha_A FLJ20171 protein; RRM d 99.0 5E-10 1.7E-14 106.5 6.0 63 569-632 22-93 (123)
197 2voo_A Lupus LA protein; RNA-b 98.9 1.5E-09 5.2E-14 109.3 6.6 60 569-628 108-172 (193)
198 2hgm_A HNRPF protein, heteroge 98.9 2.8E-09 9.7E-14 102.1 7.1 62 568-631 40-108 (126)
199 3v4m_A Splicing factor U2AF 65 98.8 4.7E-09 1.6E-13 96.8 8.1 72 568-639 3-96 (105)
200 2kn4_A Immunoglobulin G-bindin 98.8 4.7E-09 1.6E-13 100.2 8.3 116 604-719 11-138 (158)
201 2d9o_A DNAJ (HSP40) homolog, s 98.8 4.6E-09 1.6E-13 96.9 7.0 61 580-640 27-90 (100)
202 3ue2_A Poly(U)-binding-splicin 98.8 7.4E-09 2.5E-13 98.0 7.9 72 568-639 18-108 (118)
203 1jmt_A Splicing factor U2AF 35 98.8 3.1E-09 1.1E-13 97.7 3.9 58 575-632 20-94 (104)
204 2j8a_A Histone-lysine N-methyl 98.7 1.1E-08 3.7E-13 100.5 6.4 69 571-639 3-95 (136)
205 3s6e_A RNA-binding protein 39; 98.7 2.9E-08 1E-12 93.5 9.1 71 569-639 6-92 (114)
206 2i2y_A Fusion protein consists 98.7 8.6E-09 2.9E-13 98.2 4.6 115 604-719 11-136 (150)
207 1owx_A Lupus LA protein, SS-B, 98.5 3E-07 1E-11 88.5 8.1 62 566-627 14-77 (121)
208 2lea_A Serine/arginine-rich sp 98.2 1.8E-06 6E-11 82.2 6.0 103 608-719 6-115 (135)
209 3dxb_A Thioredoxin N-terminall 98.1 4.6E-06 1.6E-10 84.1 6.9 57 582-638 141-211 (222)
210 1rk8_A CG8781-PA, CG8781-PA pr 98.0 3.7E-06 1.2E-10 81.8 4.9 109 611-719 11-140 (165)
211 3pgw_S U1-70K; protein-RNA com 98.0 1.3E-06 4.5E-11 98.5 1.1 129 586-719 8-170 (437)
212 2e5h_A Zinc finger CCHC-type a 97.9 1.4E-05 4.6E-10 69.9 6.1 73 647-719 8-84 (94)
213 1why_A Hypothetical protein ri 97.9 1.7E-05 5.9E-10 70.1 6.2 66 652-719 14-79 (97)
214 3mdf_A Peptidyl-prolyl CIS-tra 97.8 1.2E-05 4.2E-10 68.8 4.6 68 652-719 4-75 (85)
215 1x4a_A Splicing factor, argini 97.8 3.8E-05 1.3E-09 69.3 7.0 68 652-719 19-87 (109)
216 2cpj_A Non-POU domain-containi 97.8 3.6E-05 1.2E-09 68.3 6.6 65 653-719 13-77 (99)
217 2dnq_A RNA-binding protein 4B; 97.8 2.8E-05 9.7E-10 67.8 5.6 64 652-719 5-68 (90)
218 2cqb_A Peptidyl-prolyl CIS-tra 97.7 3.5E-05 1.2E-09 68.4 6.1 68 652-719 9-80 (102)
219 1x5t_A Splicing factor 3B subu 97.7 3.7E-05 1.3E-09 67.4 6.1 67 653-719 3-74 (96)
220 2x1f_A MRNA 3'-END-processing 97.7 3E-05 1E-09 68.5 5.2 66 654-719 1-70 (96)
221 1x4e_A RNA binding motif, sing 97.7 5.4E-05 1.8E-09 65.1 6.5 67 653-719 3-73 (85)
222 2e5j_A Methenyltetrahydrofolat 97.7 4.9E-05 1.7E-09 67.4 6.3 66 653-719 17-82 (97)
223 2dnr_A Synaptojanin-1; RRM dom 97.7 7E-05 2.4E-09 69.4 7.4 53 584-639 29-85 (91)
224 1whw_A Hypothetical protein ri 97.7 3.8E-05 1.3E-09 67.9 5.4 68 652-719 5-76 (99)
225 2la4_A Nuclear and cytoplasmic 97.7 4.4E-05 1.5E-09 67.8 5.9 64 654-719 26-89 (101)
226 2hgl_A HNRPF protein, heteroge 97.7 3E-05 1E-09 74.9 5.1 107 606-719 1-113 (136)
227 1wex_A Hypothetical protein (r 97.7 4.9E-05 1.7E-09 70.1 6.2 63 653-717 13-75 (104)
228 2dgu_A Heterogeneous nuclear r 97.7 3.5E-05 1.2E-09 69.0 5.0 64 652-719 8-71 (103)
229 2div_A TRNA selenocysteine ass 97.7 3.3E-05 1.1E-09 68.2 4.8 68 652-719 6-78 (99)
230 2do0_A HnRNP M, heterogeneous 97.7 3.5E-05 1.2E-09 69.7 5.1 67 653-719 13-82 (114)
231 2cqc_A Arginine/serine-rich sp 97.7 4.3E-05 1.5E-09 66.7 5.4 68 652-719 12-83 (95)
232 2jvo_A Nucleolar protein 3; nu 97.7 4.5E-05 1.5E-09 69.9 5.7 63 653-719 29-91 (108)
233 2cq3_A RNA-binding protein 9; 97.7 6.9E-05 2.4E-09 66.8 6.8 68 652-719 12-81 (103)
234 2cpx_A Hypothetical protein FL 97.7 4.2E-05 1.4E-09 69.3 5.2 67 653-719 23-93 (115)
235 2dnz_A Probable RNA-binding pr 97.7 5.5E-05 1.9E-09 66.2 5.8 67 653-719 3-73 (95)
236 3r27_A HnRNP L, heterogeneous 97.6 4.2E-05 1.5E-09 71.2 5.3 62 653-716 19-80 (100)
237 3lqv_A PRE-mRNA branch site pr 97.6 4.9E-05 1.7E-09 69.0 5.5 67 653-719 6-73 (115)
238 2kvi_A Nuclear polyadenylated 97.6 5.3E-05 1.8E-09 67.2 5.6 63 653-719 8-71 (96)
239 2fc9_A NCL protein; structure 97.6 6.1E-05 2.1E-09 66.9 5.9 68 652-719 12-79 (101)
240 2cqh_A IGF-II mRNA-binding pro 97.6 6E-05 2.1E-09 66.0 5.8 64 653-719 6-71 (93)
241 3bs9_A Nucleolysin TIA-1 isofo 97.6 3.7E-05 1.3E-09 66.1 4.3 67 653-719 4-74 (87)
242 2cqi_A Nucleolysin TIAR; RNA r 97.6 6.9E-05 2.4E-09 66.8 6.1 67 653-719 13-81 (103)
243 2cpe_A RNA-binding protein EWS 97.6 9.9E-05 3.4E-09 66.8 7.2 68 652-719 12-91 (113)
244 1x4d_A Matrin 3; structural ge 97.6 4.5E-05 1.5E-09 70.6 4.9 63 653-717 13-76 (102)
245 2dgv_A HnRNP M, heterogeneous 97.6 5.5E-05 1.9E-09 65.8 5.1 68 652-719 5-74 (92)
246 2cq0_A Eukaryotic translation 97.6 4.8E-05 1.6E-09 67.8 4.7 67 653-719 13-83 (103)
247 2dgt_A RNA-binding protein 30; 97.6 6.3E-05 2.2E-09 65.9 5.3 64 652-719 7-70 (92)
248 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.6 6.7E-05 2.3E-09 69.7 5.8 68 652-719 60-131 (140)
249 4a8x_A RNA-binding protein wit 97.6 4.9E-05 1.7E-09 65.3 4.4 66 654-719 3-73 (88)
250 1x5s_A Cold-inducible RNA-bind 97.6 0.0001 3.4E-09 65.5 6.5 68 652-719 9-80 (102)
251 2xnq_A Nuclear polyadenylated 97.6 6.2E-05 2.1E-09 67.4 5.1 62 653-718 20-82 (97)
252 2dgp_A Bruno-like 4, RNA bindi 97.6 6.8E-05 2.3E-09 67.0 5.4 67 652-718 10-80 (106)
253 2d9p_A Polyadenylate-binding p 97.6 6.9E-05 2.3E-09 66.8 5.4 67 653-719 13-81 (103)
254 2dgo_A Cytotoxic granule-assoc 97.6 7.7E-05 2.6E-09 67.7 5.6 67 653-719 13-83 (115)
255 2cph_A RNA binding motif prote 97.6 9.8E-05 3.4E-09 65.9 6.2 67 653-719 13-85 (107)
256 2cpf_A RNA binding motif prote 97.6 3.8E-05 1.3E-09 67.7 3.5 67 653-719 3-76 (98)
257 2ywk_A Putative RNA-binding pr 97.6 5.6E-05 1.9E-09 66.1 4.5 68 652-719 13-83 (95)
258 3ex7_B RNA-binding protein 8A; 97.5 7.2E-05 2.5E-09 69.0 5.4 67 653-719 20-90 (126)
259 2dnp_A RNA-binding protein 14; 97.5 5.7E-05 2E-09 65.9 4.5 63 653-719 7-69 (90)
260 1x5u_A Splicing factor 3B subu 97.5 9.5E-05 3.2E-09 65.9 6.0 67 653-719 13-83 (105)
261 1p1t_A Cleavage stimulation fa 97.5 4.7E-05 1.6E-09 67.6 4.0 67 653-719 6-76 (104)
262 2dnm_A SRP46 splicing factor; 97.5 5.4E-05 1.8E-09 67.5 4.3 67 653-719 11-81 (103)
263 2ek1_A RNA-binding protein 12; 97.5 7.3E-05 2.5E-09 65.4 5.0 67 653-719 13-83 (95)
264 2do4_A Squamous cell carcinoma 97.5 7.9E-05 2.7E-09 66.1 5.3 67 653-719 15-84 (100)
265 2dgs_A DAZ-associated protein 97.5 8.3E-05 2.8E-09 65.8 5.4 67 652-719 7-77 (99)
266 1x4c_A Splicing factor, argini 97.5 8.6E-05 3E-09 67.3 5.6 63 653-718 13-75 (108)
267 2cpz_A CUG triplet repeat RNA- 97.5 7.6E-05 2.6E-09 67.9 5.2 66 654-719 24-93 (115)
268 3md1_A Nuclear and cytoplasmic 97.5 6.4E-05 2.2E-09 64.0 4.4 65 655-719 1-69 (83)
269 1p27_B RNA-binding protein 8A; 97.5 8.1E-05 2.8E-09 66.5 5.3 66 654-719 22-91 (106)
270 2krb_A Eukaryotic translation 97.5 5.5E-05 1.9E-09 65.0 4.0 65 655-719 1-73 (81)
271 1wf1_A RNA-binding protein RAL 97.5 7.6E-05 2.6E-09 67.6 5.0 62 654-719 26-88 (110)
272 2la6_A RNA-binding protein FUS 97.5 8.4E-05 2.9E-09 66.0 5.2 67 653-719 11-89 (99)
273 1oo0_B CG8781-PA, drosophila Y 97.5 8.6E-05 3E-09 66.9 5.2 67 653-719 24-94 (110)
274 2cq2_A Hypothetical protein LO 97.5 5.1E-05 1.7E-09 72.1 3.8 64 653-718 23-88 (114)
275 1nu4_A U1A RNA binding domain; 97.5 4.6E-05 1.6E-09 66.9 3.3 67 653-719 6-77 (97)
276 2dnh_A Bruno-like 5, RNA bindi 97.5 7.8E-05 2.7E-09 66.5 4.8 66 653-718 13-81 (105)
277 2lxi_A RNA-binding protein 10; 97.5 8.9E-05 3E-09 65.9 5.1 60 655-714 1-65 (91)
278 1wg1_A KIAA1579 protein, homol 97.5 0.00011 3.8E-09 64.1 5.7 63 654-719 4-66 (88)
279 2cpd_A Apobec-1 stimulating pr 97.5 7.9E-05 2.7E-09 66.1 4.7 65 653-719 13-77 (99)
280 2hzc_A Splicing factor U2AF 65 97.5 7.7E-05 2.6E-09 64.1 4.5 67 652-719 3-78 (87)
281 2cq1_A PTB-like protein L; RRM 97.5 8E-05 2.7E-09 68.4 4.8 62 652-715 12-73 (101)
282 2dnl_A Cytoplasmic polyadenyla 97.5 0.00012 4E-09 67.2 5.9 60 653-713 6-72 (114)
283 1whx_A Hypothetical protein ri 97.5 9.4E-05 3.2E-09 67.9 5.2 64 654-719 9-72 (111)
284 4fxv_A ELAV-like protein 1; RN 97.5 7.1E-05 2.4E-09 67.7 4.3 65 655-719 19-87 (99)
285 2ad9_A Polypyrimidine tract-bi 97.5 9.7E-05 3.3E-09 70.5 5.5 62 653-716 29-90 (119)
286 1x4f_A Matrin 3; structural ge 97.5 8.5E-05 2.9E-09 70.2 5.0 62 653-716 23-85 (112)
287 4f25_A Polyadenylate-binding p 97.5 6.9E-05 2.3E-09 69.0 4.3 65 655-719 5-71 (115)
288 2cpi_A CCR4-NOT transcription 97.5 7.8E-05 2.7E-09 68.1 4.6 69 651-719 11-89 (111)
289 2hvz_A Splicing factor, argini 97.5 0.00013 4.6E-09 64.7 5.8 62 656-719 1-63 (101)
290 2ytc_A PRE-mRNA-splicing facto 97.5 7.6E-05 2.6E-09 64.0 4.1 64 653-718 10-74 (85)
291 1x4h_A RNA-binding protein 28; 97.5 9E-05 3.1E-09 66.6 4.7 62 653-714 13-78 (111)
292 2dis_A Unnamed protein product 97.5 7.9E-05 2.7E-09 66.9 4.2 62 653-714 6-73 (109)
293 2err_A Ataxin-2-binding protei 97.5 0.00017 5.9E-09 65.7 6.5 68 652-719 26-95 (109)
294 2cqp_A RNA-binding protein 12; 97.4 0.00019 6.4E-09 63.3 6.5 68 652-719 12-83 (98)
295 3ulh_A THO complex subunit 4; 97.4 9.1E-05 3.1E-09 66.3 4.4 67 653-719 27-96 (107)
296 1ufw_A Synaptojanin 2; RNP dom 97.4 0.00022 7.4E-09 66.7 6.8 62 568-632 13-83 (95)
297 2lkz_A RNA-binding protein 5; 97.4 0.00016 5.6E-09 65.6 5.8 66 652-717 6-77 (95)
298 2dgx_A KIAA0430 protein; RRM d 97.4 0.00013 4.6E-09 64.7 5.1 67 653-719 7-78 (96)
299 1fjc_A Nucleolin RBD2, protein 97.4 9.8E-05 3.4E-09 64.8 4.2 67 652-719 13-79 (96)
300 2e44_A Insulin-like growth fac 97.4 0.00016 5.5E-09 63.5 5.4 66 654-719 14-80 (96)
301 2khc_A Testis-specific RNP-typ 97.4 8.5E-05 2.9E-09 67.7 3.7 66 654-719 39-108 (118)
302 2fy1_A RNA-binding motif prote 97.4 0.00018 6.1E-09 66.6 5.8 67 653-719 5-74 (116)
303 3s8s_A Histone-lysine N-methyl 97.4 0.00012 4.1E-09 67.6 4.4 67 653-719 4-74 (110)
304 1x4g_A Nucleolysin TIAR; struc 97.4 0.00015 5E-09 65.6 4.8 64 654-719 24-87 (109)
305 2kt5_A RNA and export factor-b 97.4 0.00024 8.3E-09 65.6 6.4 68 652-719 32-102 (124)
306 2cqd_A RNA-binding region cont 97.4 0.00014 4.8E-09 66.3 4.7 68 652-719 14-85 (116)
307 2dhg_A TRNA selenocysteine ass 97.3 0.00013 4.3E-09 65.1 4.2 65 653-717 7-75 (104)
308 1fj7_A Nucleolin RBD1, protein 97.3 0.00014 4.6E-09 64.7 4.4 66 653-719 15-83 (101)
309 1sjq_A Polypyrimidine tract-bi 97.3 0.00015 5.1E-09 68.0 4.8 60 654-715 15-74 (105)
310 2kxn_B Transformer-2 protein h 97.3 0.00015 5.2E-09 68.6 5.0 67 653-719 44-114 (129)
311 3beg_B Splicing factor, argini 97.3 0.00014 4.7E-09 67.1 4.5 63 654-719 15-77 (115)
312 2jrs_A RNA-binding protein 39; 97.3 0.00015 5.1E-09 66.3 4.5 67 653-719 24-94 (108)
313 3ucg_A Polyadenylate-binding p 97.3 0.00014 4.7E-09 62.7 4.0 65 654-719 5-73 (89)
314 1wi8_A EIF-4B, eukaryotic tran 97.3 0.00018 6E-09 64.4 4.8 66 652-719 12-82 (104)
315 2jvr_A Nucleolar protein 3; RN 97.3 0.00021 7.1E-09 66.9 5.3 67 653-719 26-93 (111)
316 2e5g_A U6 snRNA-specific termi 97.3 0.00016 5.6E-09 63.6 4.3 65 653-719 6-70 (94)
317 2cq4_A RNA binding motif prote 97.3 0.00015 5.2E-09 65.8 4.1 65 654-719 24-92 (114)
318 1u6f_A Tcubp1, RNA-binding pro 97.3 0.00014 4.7E-09 68.1 3.9 67 653-719 40-110 (139)
319 1uaw_A Mouse-musashi-1; RNP-ty 97.3 0.00026 8.8E-09 59.5 5.1 59 656-714 1-63 (77)
320 3p5t_L Cleavage and polyadenyl 97.3 0.00022 7.6E-09 62.5 4.8 64 656-719 2-71 (90)
321 3ns6_A Eukaryotic translation 97.3 0.00025 8.4E-09 63.8 5.0 67 653-719 4-80 (100)
322 2hgn_A Heterogeneous nuclear r 97.2 0.00013 4.4E-09 70.9 3.2 106 606-719 1-111 (139)
323 2mss_A Protein (musashi1); RNA 97.2 0.00023 7.8E-09 59.8 4.3 61 657-718 1-65 (75)
324 2nlw_A Eukaryotic translation 97.2 0.00019 6.6E-09 64.8 4.0 67 653-719 13-87 (105)
325 1x5o_A RNA binding motif, sing 97.2 0.00032 1.1E-08 63.6 5.4 67 653-719 23-92 (114)
326 2dh8_A DAZ-associated protein 97.2 0.00018 6.1E-09 64.3 3.6 68 651-719 12-83 (105)
327 2db1_A Heterogeneous nuclear r 97.2 0.00029 9.8E-09 65.4 5.2 71 648-719 10-86 (118)
328 2j76_E EIF-4B, EIF4B, eukaryot 97.2 0.0002 6.8E-09 64.1 3.8 65 653-719 17-86 (100)
329 1h2v_Z 20 kDa nuclear CAP bind 97.2 0.00023 7.9E-09 68.2 4.5 67 653-719 37-107 (156)
330 2fc8_A NCL protein; structure 97.2 0.00018 6.1E-09 63.8 3.5 64 653-719 13-80 (102)
331 2cqg_A TDP-43, TAR DNA-binding 97.2 0.00025 8.7E-09 63.1 4.4 61 652-712 12-76 (103)
332 1s79_A Lupus LA protein; RRM, 97.2 0.00033 1.1E-08 64.1 5.0 65 652-717 8-75 (103)
333 3egn_A RNA-binding protein 40; 97.2 0.00029 9.9E-09 66.6 4.5 67 653-719 43-118 (143)
334 2z73_A Rhodopsin; visual pigme 97.1 6.7E-05 2.3E-09 81.0 0.0 8 347-354 132-139 (448)
335 2jwn_A Embryonic polyadenylate 97.1 0.0002 6.9E-09 65.8 3.0 65 654-719 35-103 (124)
336 2a3j_A U1 small nuclear ribonu 97.1 0.00036 1.2E-08 66.6 4.7 67 653-719 27-98 (127)
337 2rs2_A Musashi-1, RNA-binding 97.1 0.0003 1E-08 64.3 3.9 61 654-714 24-88 (109)
338 2m2b_A RNA-binding protein 10; 97.1 0.00049 1.7E-08 64.5 5.3 63 653-716 21-89 (131)
339 2dng_A Eukaryotic translation 97.1 0.00049 1.7E-08 61.4 5.0 66 652-719 12-81 (103)
340 2lmi_A GRSF-1, G-rich sequence 97.1 0.00067 2.3E-08 61.5 5.8 67 652-719 8-80 (107)
341 3n9u_C Cleavage and polyadenyl 97.0 0.00033 1.1E-08 68.6 4.0 66 654-719 54-125 (156)
342 2f3j_A RNA and export factor b 97.0 0.00066 2.3E-08 67.7 6.1 68 652-719 85-155 (177)
343 3s7r_A Heterogeneous nuclear r 97.0 0.00032 1.1E-08 60.5 3.3 60 653-712 9-72 (87)
344 2cpy_A RNA-binding protein 12; 97.0 0.00085 2.9E-08 61.4 6.1 65 653-718 13-81 (114)
345 3tht_A Alkylated DNA repair pr 97.0 0.00035 1.2E-08 77.4 4.2 65 652-718 15-81 (345)
346 2wbr_A GW182, gawky, LD47780P; 97.0 0.00055 1.9E-08 63.2 4.7 64 654-719 6-69 (89)
347 2dgw_A Probable RNA-binding pr 97.0 0.00058 2E-08 59.5 4.7 65 653-719 8-75 (91)
348 1wf0_A TDP-43, TAR DNA-binding 97.0 0.00062 2.1E-08 59.1 4.7 56 653-709 3-58 (88)
349 1x4b_A Heterogeneous nuclear r 97.0 0.00054 1.9E-08 62.4 4.4 64 654-718 26-93 (116)
350 3u1l_A PRE-mRNA-splicing facto 97.0 0.0005 1.7E-08 72.8 4.7 64 653-718 132-204 (240)
351 2ki2_A SS-DNA binding protein 97.0 0.0003 1E-08 61.0 2.5 63 656-719 2-68 (90)
352 1sjr_A Polypyrimidine tract-bi 96.9 0.00059 2E-08 68.8 4.7 65 654-718 45-109 (164)
353 1wel_A RNA-binding protein 12; 96.9 0.00051 1.7E-08 63.7 3.8 66 653-719 23-92 (124)
354 1wg5_A Heterogeneous nuclear r 96.9 0.00092 3.1E-08 60.3 5.2 66 653-719 13-82 (104)
355 1x5p_A Negative elongation fac 96.9 0.00077 2.6E-08 59.7 4.4 62 654-719 14-75 (97)
356 2lcw_A RNA-binding protein FUS 95.9 0.00017 5.7E-09 65.9 0.0 67 653-719 5-83 (116)
357 2xs2_A Deleted in azoospermia- 96.8 0.00022 7.5E-09 63.4 0.5 67 653-719 7-79 (102)
358 3zzy_A Polypyrimidine tract-bi 96.8 0.00086 2.9E-08 65.1 4.5 70 648-718 19-91 (130)
359 1iqt_A AUF1, heterogeneous nuc 96.8 0.00087 3E-08 56.1 3.7 56 657-712 1-60 (75)
360 2e5i_A Heterogeneous nuclear r 96.7 0.0013 4.4E-08 63.1 5.1 61 656-718 26-87 (124)
361 3d2w_A TAR DNA-binding protein 96.7 0.0011 3.8E-08 58.7 4.3 59 649-708 5-63 (89)
362 2bz2_A Negative elongation fac 96.7 0.0023 7.9E-08 60.0 6.2 63 653-719 37-99 (121)
363 1wez_A HnRNP H', FTP-3, hetero 96.6 0.0017 5.7E-08 59.0 4.5 66 652-719 12-80 (102)
364 3q2s_C Cleavage and polyadenyl 96.5 0.00095 3.2E-08 69.0 2.6 65 654-718 67-137 (229)
365 2dit_A HIV TAT specific factor 96.5 0.0056 1.9E-07 56.0 7.2 67 653-719 13-90 (112)
366 1wey_A Calcipressin 1; structu 96.4 0.0052 1.8E-07 58.3 6.9 70 570-639 5-83 (104)
367 2hgm_A HNRPF protein, heteroge 96.4 0.0018 6.2E-08 62.1 3.8 60 654-714 41-105 (126)
368 2diu_A KIAA0430 protein; struc 96.2 0.0037 1.3E-07 58.5 4.6 63 654-719 7-72 (96)
369 2dha_A FLJ20171 protein; RRM d 96.2 0.0052 1.8E-07 58.4 5.5 65 654-719 22-93 (123)
370 2dnn_A RNA-binding protein 12; 96.2 0.0045 1.5E-07 57.6 4.9 64 654-719 15-81 (109)
371 2pe8_A Splicing factor 45; RRM 96.0 0.008 2.7E-07 55.4 5.5 68 652-719 5-82 (105)
372 2voo_A Lupus LA protein; RNA-b 95.8 0.004 1.4E-07 62.7 3.3 64 654-717 108-174 (193)
373 1uw4_A UPF3X; nonsense mediate 95.6 0.032 1.1E-06 51.5 7.9 60 571-630 2-69 (91)
374 2l9w_A U4/U6 snRNA-associated- 94.3 0.12 4.3E-06 49.9 8.2 62 570-631 21-87 (117)
375 3s6e_A RNA-binding protein 39; 94.2 0.073 2.5E-06 50.1 6.3 70 650-719 2-81 (114)
376 3pq1_A Poly(A) RNA polymerase; 93.6 0.028 9.6E-07 64.7 2.8 56 567-623 50-106 (464)
377 3v4m_A Splicing factor U2AF 65 93.6 0.076 2.6E-06 48.8 5.1 68 652-719 2-85 (105)
378 3ue2_A Poly(U)-binding-splicin 92.4 0.094 3.2E-06 49.6 4.1 66 654-719 19-97 (118)
379 3u0r_A Apoptosis inhibitor 5; 91.9 0.4 1.4E-05 55.8 9.2 142 54-263 6-147 (507)
380 1owx_A Lupus LA protein, SS-B, 91.7 0.23 7.9E-06 47.9 5.9 60 652-714 15-77 (121)
381 1wwh_A Nucleoporin 35, nucleop 90.6 0.6 2.1E-05 45.3 7.6 74 556-631 10-83 (119)
382 2dhx_A Poly (ADP-ribose) polym 89.0 1 3.6E-05 42.9 7.7 62 569-632 7-77 (104)
383 2l08_A Regulator of nonsense t 88.9 0.42 1.4E-05 44.9 4.9 61 570-630 9-77 (97)
384 1jmt_A Splicing factor U2AF 35 88.5 0.25 8.5E-06 45.2 3.1 60 660-719 20-94 (104)
385 1whv_A Poly(A)-specific ribonu 88.2 1.3 4.4E-05 42.0 7.6 61 571-634 17-77 (100)
386 3ctr_A Poly(A)-specific ribonu 87.1 0.52 1.8E-05 44.7 4.3 56 571-630 7-63 (101)
387 2d9o_A DNAJ (HSP40) homolog, s 85.3 0.5 1.7E-05 43.5 3.2 50 665-715 27-76 (100)
388 3d45_A Poly(A)-specific ribonu 81.6 2.2 7.5E-05 49.5 7.2 62 569-634 439-501 (507)
389 3h0g_A DNA-directed RNA polyme 80.7 0.32 1.1E-05 63.7 0.0 17 55-71 272-288 (1752)
390 2j8a_A Histone-lysine N-methyl 79.2 0.93 3.2E-05 45.0 2.7 64 656-719 3-84 (136)
391 3h0g_A DNA-directed RNA polyme 78.3 0.43 1.5E-05 62.7 0.0 11 133-143 612-622 (1752)
392 3dxb_A Thioredoxin N-terminall 75.0 1.5 5.1E-05 44.1 2.9 52 667-718 141-200 (222)
393 2l9w_A U4/U6 snRNA-associated- 39.2 42 0.0014 32.7 5.6 65 655-719 21-88 (117)
394 3p3d_A Nucleoporin 53; structu 37.8 21 0.00073 35.3 3.4 46 580-625 16-81 (132)
395 1ufw_A Synaptojanin 2; RNP dom 36.4 21 0.0007 33.6 2.9 61 656-719 16-83 (95)
396 1whv_A Poly(A)-specific ribonu 36.0 73 0.0025 30.3 6.5 55 656-715 17-71 (100)
397 2dnr_A Synaptojanin-1; RRM dom 33.1 17 0.00059 33.7 1.9 51 666-719 22-74 (91)
398 1wey_A Calcipressin 1; structu 27.3 39 0.0013 32.2 3.2 61 655-717 5-70 (104)
399 2uuu_A Alkyldihydroxyacetoneph 26.9 36 0.0012 40.1 3.6 77 563-639 266-353 (584)
400 3pm9_A Putative oxidoreductase 26.2 55 0.0019 37.5 4.8 77 563-639 177-267 (476)
401 4bby_A Alkyldihydroxyacetoneph 25.5 47 0.0016 39.5 4.2 78 562-639 334-423 (658)
402 4ffe_X CPXV018 protein; viral 25.1 23 0.00079 34.6 1.2 21 242-262 50-70 (151)
403 1twf_A B220, DNA-directed RNA 22.3 18 0.00063 47.9 0.0 126 880-1005 1561-1693(1733)
No 1
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=2.5e-20 Score=174.36 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=120.2
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccC------ceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK------GFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~r------gfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+++||||||+.+++++||+++|++||+|.++.+.+.+ |||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999997654 99999999999999999999998775 777776
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 639 ~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+.. .....+.|||++++..++.++|...|..+|.+..+.+. + ...++.++++|.+.++|..|++.|+
T Consensus 81 ~~~---------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 81 PSS---------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp CCC---------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCc---------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 521 12357899999999999999999999987755555442 2 2235789999999999999999999
Q ss_pred hhccc
Q 001325 715 QHRKS 719 (1100)
Q Consensus 715 ~~r~~ 719 (1100)
++..+
T Consensus 152 g~~~~ 156 (167)
T 1fxl_A 152 GQKPS 156 (167)
T ss_dssp TCCCT
T ss_pred CCccC
Confidence 87653
No 2
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.82 E-value=4.5e-20 Score=174.32 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=118.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe--------ccCceEEEEecCHHHHHHHHHhhcCCcee-------
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHFSW------- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~--------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~------- 632 (1100)
+.+++||||||+.+++|+||+++|++||+|.++++. ..||||||+|.+.++|.+|++.|+|..+.
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999999999986 46799999999999999999999997653
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHH
Q 001325 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTA 709 (1100)
Q Consensus 633 RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~A 709 (1100)
++.+.+..-. .....+.||||+++..+++++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|
T Consensus 81 ~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 81 QMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp EEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred EEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 5555544211 12368899999999999999999999987765555442 2 22356799999999999999
Q ss_pred HHHhhhhcc
Q 001325 710 MAHLRQHRK 718 (1100)
Q Consensus 710 k~~l~~~r~ 718 (1100)
+..|+++..
T Consensus 153 ~~~l~g~~~ 161 (175)
T 3nmr_A 153 IKAMHQAQT 161 (175)
T ss_dssp HHHHTTSCC
T ss_pred HHHhcCCcc
Confidence 999998753
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.8e-20 Score=172.31 Aligned_cols=142 Identities=16% Similarity=0.223 Sum_probs=120.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~ 641 (1100)
|+||||||+.+++++||++.|++||+|.+|++.+ .+|||||+|.+.++|.+|++.|+|..+. +|+++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999964 4699999999999999999999999775 777775532
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.. ...+++.|||++++..++.++|...|..+|.+..+.+. + ...++.++++|.+.++|..|+..|+++.
T Consensus 81 ~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 81 QS-------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CC-------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CC-------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 11 13468899999999999999999999987765555442 2 3345689999999999999999999876
Q ss_pred cc
Q 001325 718 KS 719 (1100)
Q Consensus 718 ~~ 719 (1100)
.+
T Consensus 154 ~~ 155 (166)
T 3md3_A 154 LN 155 (166)
T ss_dssp ET
T ss_pred cC
Confidence 54
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=7.3e-20 Score=172.28 Aligned_cols=141 Identities=17% Similarity=0.215 Sum_probs=119.7
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
++++||||||+.+++++||++.|++||+|.++++.+ .+|||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999999865 4589999999999999999999998765 777776
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 639 ~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+... ...++.|||++++..+++|+|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+..|+
T Consensus 82 ~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 82 PGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp CCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 5311 2367899999999999999999999987755555442 2 2234789999999999999999999
Q ss_pred hhcc
Q 001325 715 QHRK 718 (1100)
Q Consensus 715 ~~r~ 718 (1100)
++..
T Consensus 153 g~~~ 156 (168)
T 1b7f_A 153 NVIP 156 (168)
T ss_dssp TCCC
T ss_pred CCEe
Confidence 9864
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=1.3e-19 Score=181.57 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=118.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.++||++|+++|++||+|.+|++.+ .+|||||+|.+.+||..|++.|+|..+. |+.+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3678999999999999999999999999999999853 5789999999999999999999998764 55555
Q ss_pred eccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhh
Q 001325 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 638 r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
.... .......+.||||+++..+++++|...|..+|.+..+.+. + -..++..+|+|.+.++|..|++.|++
T Consensus 93 ~~~~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 93 QRDP-------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp CCCT-------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccc-------cccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 3310 0112256789999999999999999999988766655442 2 23467899999999999999999998
Q ss_pred hccc
Q 001325 716 HRKS 719 (1100)
Q Consensus 716 ~r~~ 719 (1100)
+..+
T Consensus 166 ~~~~ 169 (213)
T 4f02_A 166 MLLN 169 (213)
T ss_dssp CEET
T ss_pred CEEC
Confidence 7655
No 6
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.80 E-value=5.6e-19 Score=178.70 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=120.6
Q ss_pred ccceEEeccCC-CcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCC
Q 001325 569 ASKQLWLGSFG-PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1100)
Q Consensus 569 ~Sr~LWVGnLg-~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~g 642 (1100)
+++.||||||+ .++++++|+.+|++||.|.+|++.+ .||||||+|.+.++|..|++.|+|..+. +|+|++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 7999999999999999999999987 6899999999999999999999999775 7888753210
Q ss_pred C--------------Ccc----cccc----------cccccceEEEccCCCcchhHHHHHhhhccccc--CCceee-c-C
Q 001325 643 T--------------KGV----INGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVT-D-L 690 (1100)
Q Consensus 643 s--------------rg~----~~Gv----------a~~~Sr~LwVG~Iss~~~kEELfsE~dkag~k--gPv~f~-D-l 690 (1100)
. +.. .+.. ...+++.|||+++|..++.|+|..-|..+|.+ ..+.+. + .
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 0 000 0000 01357889999999999999999999987766 333321 2 1
Q ss_pred CCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 691 SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 691 see~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..++..+|||++.+||..|+..|+++...
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 22478999999999999999999998755
No 7
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=4.5e-19 Score=167.97 Aligned_cols=142 Identities=14% Similarity=0.189 Sum_probs=118.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~f----G-------pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
.++++||||||+.++|++||++.|++| | +|.++.+.++||||||+|.+.+||.+|+ .|+|..+.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 468999999999999999999999999 7 8889999999999999999999999999 89998775
Q ss_pred EEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHH
Q 001325 633 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATT 708 (1100)
Q Consensus 633 RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~ 708 (1100)
+|++.... . ....++.||||+++..++.++|...|..+|.+..+.+. + ...++.++++|.+.++|..
T Consensus 81 ~v~~~~~~--~-------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 81 KIRRPHDY--Q-------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp EEECCSSC--C-------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred eecCCccc--C-------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 44443321 0 12347999999999999999999999987765555442 2 2335789999999999999
Q ss_pred HHHHhhhhccc
Q 001325 709 AMAHLRQHRKS 719 (1100)
Q Consensus 709 Ak~~l~~~r~~ 719 (1100)
|++.|+++..+
T Consensus 152 A~~~l~g~~~~ 162 (172)
T 2g4b_A 152 AIAGLNGMQLG 162 (172)
T ss_dssp HHHHHTTCEET
T ss_pred HHHHcCCCEEC
Confidence 99999987654
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=2.4e-19 Score=175.60 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=121.4
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI 634 (1100)
+-...+++||||||+.+++|+||+++|++||+|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 3455689999999999999999999999999999999954 5899999999999999999999998776 44
Q ss_pred EEeeccCCCCccccc--ccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHH
Q 001325 635 KFMDVGLGTKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATT 708 (1100)
Q Consensus 635 ~F~r~~~gsrg~~~G--va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~ 708 (1100)
.+............. ......+.|||++++..+++|+|...|..++.+..+.+. + ...++.++|+|.+.++|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 433221000000000 011357899999999999999999999987765555442 2 2336789999999999999
Q ss_pred HHHHhhhhccc
Q 001325 709 AMAHLRQHRKS 719 (1100)
Q Consensus 709 Ak~~l~~~r~~ 719 (1100)
|+..|+++..+
T Consensus 183 A~~~l~g~~~~ 193 (216)
T 2qfj_A 183 AVSSMNLFDLG 193 (216)
T ss_dssp HHHHHTTCBCS
T ss_pred HHHHccCCEeC
Confidence 99999987765
No 9
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=170.00 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=121.1
Q ss_pred cceEEeccCCC-cccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC--
Q 001325 570 SKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL-- 641 (1100)
Q Consensus 570 Sr~LWVGnLg~-~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~-- 641 (1100)
+++||||||+. ++++++|+++|++||.|.+|.+.+ .+|||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 68999999999 999999999999999999999987 4799999999999999999999998775 888886431
Q ss_pred ----CCC--ccc-------------cc-----ccccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeecCCCCccc
Q 001325 642 ----GTK--GVI-------------NG-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGAL 696 (1100)
Q Consensus 642 ----gsr--g~~-------------~G-----va~~~Sr~LwVG~Iss~~~kEELfsE~dkag-~kgPv~f~Dlsee~aL 696 (1100)
+.. +.. .+ ....+++.|||++++..++.|+|...|..+| ....+.+. -..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~-~~~~g~a 161 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRKMA 161 (198)
T ss_dssp CSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES-STTSSCE
T ss_pred CCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE-eCCCcEE
Confidence 000 000 00 0013589999999999999999999999876 44444431 2357899
Q ss_pred ccccCCHHHHHHHHHHhhhhccc
Q 001325 697 LMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 697 LmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+|+|.+.++|..|+..|+++..+
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCS
T ss_pred EEEeCCHHHHHHHHHHhcCCccC
Confidence 99999999999999999997754
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.78 E-value=1.3e-18 Score=175.94 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=122.0
Q ss_pred cccceEEeccCCC-cccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001325 568 SASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~-~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~ 641 (1100)
.++++||||||+. ++++++|+++|++||+|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|++++...
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 5789999999999 999999999999999999999987 4799999999999999999999998775 788876431
Q ss_pred ------CCC--------------cc-ccc-----ccccccceEEEccCCCcchhHHHHHhhhccc-ccCCceeecCCCCc
Q 001325 642 ------GTK--------------GV-ING-----VAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEG 694 (1100)
Q Consensus 642 ------gsr--------------g~-~~G-----va~~~Sr~LwVG~Iss~~~kEELfsE~dkag-~kgPv~f~Dlsee~ 694 (1100)
+.. .. -.+ ....+++.|||++++..+++++|...|..+| .+..+.+. -.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~-~~~~g 190 (229)
T 2adc_A 112 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-QKDRK 190 (229)
T ss_dssp CCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-SSSTT
T ss_pred ccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE-ECCCc
Confidence 000 00 000 0123589999999999999999999999875 44433331 23688
Q ss_pred ccccccCCHHHHHHHHHHhhhhccc
Q 001325 695 ALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 695 aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++|+|.+.++|..|+..|+++..+
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred EEEEEECCHHHHHHHHHHHCCCccC
Confidence 9999999999999999999997754
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.78 E-value=6.4e-19 Score=170.42 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=119.6
Q ss_pred ccceEEeccCCCcccHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~f----G-------pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----R 633 (1100)
.+|+||||||+.+++|+||+++|++| | .|.++.+-+.||||||+|.+.+||.+|+ .|+|..+. +
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 58999999999999999999999999 6 7888888889999999999999999999 89998775 5
Q ss_pred EEEeeccCCCC-----------cccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCccccc
Q 001325 634 VKFMDVGLGTK-----------GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLM 698 (1100)
Q Consensus 634 I~F~r~~~gsr-----------g~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLm 698 (1100)
|++........ +........+++.||||+++..++.++|...|..+|.+..+.+. + ...++.+++
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 55553321111 11122222468999999999999999999999987765555442 2 233678999
Q ss_pred ccCCHHHHHHHHHHhhhhccc
Q 001325 699 EFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 699 EF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+|.+.++|..|+..|+++..+
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEET
T ss_pred EECCHHHHHHHHHHcCCCEEC
Confidence 999999999999999987754
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.77 E-value=1.7e-18 Score=178.16 Aligned_cols=151 Identities=11% Similarity=0.199 Sum_probs=121.8
Q ss_pred ccccceEEeccCCCcccHHHHH----HHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~----~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
..++++||||||+.+++++||+ ++|++||.|.+|++.+ .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 3679999999999999999977 8999999999999865 8899999999999999999999998765 788
Q ss_pred EeeccCCC----------------------------------------Cccccc--------------------------
Q 001325 636 FMDVGLGT----------------------------------------KGVING-------------------------- 649 (1100)
Q Consensus 636 F~r~~~gs----------------------------------------rg~~~G-------------------------- 649 (1100)
|++..... .+...|
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 87543210 000000
Q ss_pred ------------------------------------ccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCC-
Q 001325 650 ------------------------------------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC- 692 (1100)
Q Consensus 650 ------------------------------------va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlse- 692 (1100)
....+++.||||+++..+++|+|...|..++.+..+.+. .+
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~--~~~ 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--PGR 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--cCC
Confidence 011157889999999999999999999987665555443 33
Q ss_pred CcccccccCCHHHHHHHHHHhhhhccc
Q 001325 693 EGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 693 e~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
++..+|||.+.++|..|+..|+++..+
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 379999999999999999999997654
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.77 E-value=1.6e-18 Score=178.89 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=119.2
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.-+..+++||||||+.++|++||+.+|++||.|.+|++.+.||||||+|.+.++|..|++.|+|..+. +|+++..
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 34677899999999999999999999999999999999999999999999999999999999998765 6776644
Q ss_pred CCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhh
Q 001325 641 LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 641 ~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
++.||||+++..++.++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+..|++
T Consensus 96 --------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 --------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp --------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred --------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 6789999999999999999999987766555442 3 33467899999999999999999965
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.77 E-value=1.2e-18 Score=179.27 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=145.2
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCC
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLG 642 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~g 642 (1100)
+..+++||||||+.++|++||+++|++|| |.++.+-..+|||||+|.+.+||..|++.|+|..+. +|++..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 45789999999999999999999999999 999999889999999999999999999999998765 555532
Q ss_pred CCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 643 TKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 643 srg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..+.||||+++..++.++|...|..+|.+..+.+. + ...++..+++|.+.++|..|+..|+++..
T Consensus 94 -----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 -----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp -----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred -----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 36799999999999999999999987765555442 2 33456899999999999999999998765
Q ss_pred ccCCCC-CCCCCCCCccccccCCCCCCCCcceEe-eecc-----cccccccccCCCCcccccccCCCCCCCCCCCc
Q 001325 719 SRSNYL-PPNTGPANAAMSQIDGARSVPAAPIHV-DIRS-----NRLGNISAGGFGSPHTAPFHSSQPGFHHATSF 787 (1100)
Q Consensus 719 ~rs~~~-~~~~~~~~~~~~~~d~~~s~Ps~~l~i-~~p~-----~~l~NlA~~~fGei~rf~idfS~p~~~~~~~F 787 (1100)
+..... .... .........+..+|+| ++|. +.|.. .+..||.|....|.....+...++.|
T Consensus 163 ~g~~i~v~~a~-------~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~-~f~~~G~i~~v~i~~~~~g~~~g~af 230 (284)
T 3smz_A 163 GPRTLYVHWTD-------AGQLTPALLHSRCLCVDRLPPGFNDVDALCR-ALSAVHSPTFCQLACGQDGQLKGFAV 230 (284)
T ss_dssp TTEECEEEECC-------GGGCCTTTTSCSEEEEECCCTTCCCHHHHHH-HTCSSSCCSEEEEEECSSCCEEEEEE
T ss_pred CCcEEEEEECC-------CCCCCcccCCccEEEEecCCcccCCHHHHHH-HhhCCCCeEEEEEEECCCCCcccEEE
Confidence 511100 0000 0001112345666665 4552 33445 67789999988874433333333333
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.4e-18 Score=167.77 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=110.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.++||+||+++|++||+|.+|.+.. .||||||+|.+.+||..|++. +|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4689999999999999999999999999999999864 478999999999999999987 666543 66666
Q ss_pred eccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHH
Q 001325 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 638 r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
....... .......++.||||+++..++.|+|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+..
T Consensus 90 ~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 90 VSREDSQ---RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp CC--------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cCccccc---ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 4321111 01112357899999999999999999999987766555443 2 23466899999999999999975
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=7.4e-19 Score=165.73 Aligned_cols=139 Identities=10% Similarity=0.104 Sum_probs=111.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHh---hcCCceeEEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~---LqG~~~~RI~F~r 638 (1100)
.++++||||||+.++||++|+++|++||+|.++++.+ .||||||+|.+.++|..|++. |+|+.+ ++.++.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i-~v~~~~ 79 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVI-DPKRAI 79 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEEC-CCEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEc-cccccc
Confidence 3689999999999999999999999999999999864 469999999999999999997 555332 344443
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 639 ~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+. .....++.||||+++..+++++|...|..+|.+..+.+. + ...++.++|+|.+.++|.+|++ ++
T Consensus 80 ~~---------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 80 PR---------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp CH---------HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred ch---------hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 21 012357899999999999999999999987766555442 2 3445789999999999999997 65
Q ss_pred hhc
Q 001325 715 QHR 717 (1100)
Q Consensus 715 ~~r 717 (1100)
++.
T Consensus 150 ~~~ 152 (167)
T 2cjk_A 150 FID 152 (167)
T ss_dssp EEC
T ss_pred CEE
Confidence 544
No 17
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=3.2e-18 Score=163.37 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=114.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce-----EEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-----FFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~-----V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
..+++||||||+.+++++||++.|..||.+.. ...-..||||||+|.+.+||.+|++ |+|..+. +|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 35799999999999999999999999997655 3334589999999999999999995 9998775 555554
Q ss_pred ccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 639 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 639 ~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..-. .....++.||||+++..++.++|...|..++...-+ ......++.++|+|.+.++|..|+..|+++..
T Consensus 90 ~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 90 GRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred Cccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3211 123478999999999999999999999975433222 12345678899999999999999999998765
Q ss_pred c
Q 001325 719 S 719 (1100)
Q Consensus 719 ~ 719 (1100)
+
T Consensus 162 ~ 162 (175)
T 1fje_B 162 D 162 (175)
T ss_dssp T
T ss_pred C
Confidence 4
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.72 E-value=1.9e-17 Score=171.09 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=135.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeeccC
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 641 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~~ 641 (1100)
..+++||||||+.+++++||+++|++||+|.+|++.+ .+|||||+|.+.+||..|++ |+|..+. .|+....
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-- 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-- 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC--
Confidence 4689999999999999999999999999999999976 68999999999999999995 9998765 3332221
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhccc-ccCCceee---cCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag-~kgPv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.++.||||+++..++.++|...|..+| .+..+.+. ....++.++|+|.+.++|..|+..|+++.
T Consensus 116 ------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 116 ------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLK 183 (292)
T ss_dssp ------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 478999999999999999999999877 55555442 13467889999999999999999999877
Q ss_pred cccCCCC-CCCCCCCCccccccCCCCCCCCcceEee-ecc-----cccccccccCCCCcccccccC
Q 001325 718 KSRSNYL-PPNTGPANAAMSQIDGARSVPAAPIHVD-IRS-----NRLGNISAGGFGSPHTAPFHS 776 (1100)
Q Consensus 718 ~~rs~~~-~~~~~~~~~~~~~~d~~~s~Ps~~l~i~-~p~-----~~l~NlA~~~fGei~rf~idf 776 (1100)
..-.... ........ ....+ ....+..+|+|+ +|. +.|.. .+..||+|..++|-.
T Consensus 184 ~~g~~l~v~~a~~~~~--~~~~~-~~~~~~~~l~v~nlp~~~~t~~~l~~-~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 184 IEGYTLVTKVSNPLEK--SKRTD-SATLEGREIMIRNLSTELLDENLLRE-SFEGFGSIEKINIPA 245 (292)
T ss_dssp ETTEECEEEECCCC------------CCTTTEEEEEEECTTTCCHHHHHH-HHGGGSCEEEEECCS
T ss_pred eCCcEEEEEECCCCcc--ccccc-ccCCCCceEEEECCCcccCCHHHHHH-HHhccCCeeEEEEEe
Confidence 6511100 00000000 00000 123556677664 552 34445 667899999988843
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.71 E-value=5.7e-17 Score=166.91 Aligned_cols=157 Identities=19% Similarity=0.232 Sum_probs=128.3
Q ss_pred ccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 557 ~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
++|-+.-...-...++||||||+.+++++||+++|++||.|.++.+.. .+|||||+|.+.++|.+|++.|+|..
T Consensus 82 ~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 82 LRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp ETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred eCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 445555555566789999999999999999999999999999998764 47899999999999999999999987
Q ss_pred ee----EEEEeeccCCCCcccccccccccceEEEccCCCcc-hhHHHHHhhhcccccCCceee-c--CCCCcccccccCC
Q 001325 631 SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQW-AKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRT 702 (1100)
Q Consensus 631 ~~----RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~-~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s 702 (1100)
+. +|+++++.-.. .....++.|||++++..+ +.|+|...|..+|.+..+.+. + ...++.++|+|.+
T Consensus 162 ~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 162 LGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp ETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred eCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 65 78888663111 112368899999999996 889999999987766555542 2 3447789999999
Q ss_pred HHHHHHHHHHhhhhccc
Q 001325 703 PEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 703 ~eEA~~Ak~~l~~~r~~ 719 (1100)
.++|..|+..|+++..+
T Consensus 236 ~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLG 252 (284)
T ss_dssp HHHHHHHHHHHTTCEET
T ss_pred HHHHHHHHHHhCCCccC
Confidence 99999999999998765
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=7.2e-17 Score=166.81 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=119.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccC-CcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fG-pLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.++++++|+++|++|| +|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3689999999999999999999999999 999999864 6899999999999999999999998775 78887
Q ss_pred eccCCCCcccccccccccceEEEccCCCc-chhHHHHHhhhcccccCCceee-c----CCCCcccccccCCHHHHHHHHH
Q 001325 638 DVGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMA 711 (1100)
Q Consensus 638 r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~-~~kEELfsE~dkag~kgPv~f~-D----lsee~aLLmEF~s~eEA~~Ak~ 711 (1100)
++.-..... ......++.|||++++.. ++.|+|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+
T Consensus 195 ~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 195 NPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 664221100 012346899999999999 9999999999987755555442 2 344678999999999999999
Q ss_pred Hhhhhccc
Q 001325 712 HLRQHRKS 719 (1100)
Q Consensus 712 ~l~~~r~~ 719 (1100)
.|+++..+
T Consensus 272 ~l~g~~~~ 279 (292)
T 2ghp_A 272 QMNRSLLG 279 (292)
T ss_dssp GGTTEEET
T ss_pred HhcCCEEC
Confidence 99997754
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=3e-16 Score=144.66 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=64.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~ 641 (1100)
+.+||||||+.+++|+||+++|++||+|.+|.+.+ .||||||+|.+.+||.+|++.|+|..+. +|+++.+.-
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 56899999999999999999999999999999865 4899999999999999999999999775 777775431
Q ss_pred CCCcccccccccccceEEEccCCCcchhH
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKD 670 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kE 670 (1100)
.+..-.+........|||++++..+++|
T Consensus 85 -~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 -EREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -C---------------------------
T ss_pred -ccccccccccCCCCceEeCCCCCCcccc
Confidence 1111122223456789999999998876
No 22
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=131.12 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=70.6
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
-....++++||||||+.+++++||+++|++||+|++|++.+.||||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 345678999999999999999999999999999999999999999999999999999999999998765 8888866
No 23
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=130.78 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=76.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-CceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccCCCCc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKG 645 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~gsrg 645 (1100)
++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|++++.....+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 57999999999999999999999999999999884 999999999999999999999998765 8999865421111
Q ss_pred ccccccc---cccceEEEccCC
Q 001325 646 VINGVAV---GSCFHVYVGNIP 664 (1100)
Q Consensus 646 ~~~Gva~---~~Sr~LwVG~Is 664 (1100)
.|-.. ..+..||||++.
T Consensus 81 --~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 --FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp --CCSCCCSCCCCSCCCSCCCC
T ss_pred --CCCCCccccCCCceecCCCC
Confidence 11111 247889999985
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=135.34 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=68.1
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce------eEEEE
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS------WRVKF 636 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~------~RI~F 636 (1100)
.+....+++.||||||+.++||+||+++|++||+|.+|++.+.||||||+|++.++|.+|++.|+|..+ .+|.|
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 456678999999999999999999999999999999999999999999999999999999999999753 27777
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+.+
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=133.38 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=69.5
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEE
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKF 636 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~--~----~RI~F 636 (1100)
.+.-..+++.||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|+. + .+|+|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999998764 2 28888
Q ss_pred eecc
Q 001325 637 MDVG 640 (1100)
Q Consensus 637 ~r~~ 640 (1100)
++..
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 8653
No 26
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-14 Score=130.51 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=67.6
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCC--ce----eEEEEe
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FS----WRVKFM 637 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~--~~----~RI~F~ 637 (1100)
..-..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|.+.++|..|++.|+|. .+ .+|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 344468999999999999999999999999999999999999999999999999999999998653 23 278888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
+..
T Consensus 89 ~~~ 91 (101)
T 2cq1_A 89 NHK 91 (101)
T ss_dssp SCS
T ss_pred Ccc
Confidence 653
No 27
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=136.36 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=61.2
Q ss_pred cccceEEe--ccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 568 SASKQLWL--GSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 568 ~~Sr~LWV--GnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
.++++||| |||+.+++|++|+++|++||.|++|++.++||||||+|.+.+||.+|++.|+|+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46899999 88999999999999999999999999988999999999999999999999999865
No 28
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-14 Score=133.25 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=65.7
Q ss_pred ccceEEeccCCC-cccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc--ee----EEEEeec
Q 001325 569 ASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDV 639 (1100)
Q Consensus 569 ~Sr~LWVGnLg~-~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~--~~----RI~F~r~ 639 (1100)
++++||||||+. +++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.. +. +|.|++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 789999999999 99999999999999999999999999999999999999999999999864 32 7888864
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=128.72 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=65.6
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
++-...+||||||+.++||+||+++|++||+|.++.+.+ .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344456899999999999999999999999999999853 5789999999999999999999999765 888
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
|++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8876
No 30
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=120.97 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=64.7
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhh-cCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-RNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~L-qG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||++.|++||+|.++.+.++||||||+|.+.++|..|++.| +|..+. +|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999 887654 66665
No 31
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.8e-14 Score=124.15 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=67.4
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee------EEEEeec
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 639 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~------RI~F~r~ 639 (1100)
-.++++||||||+.+++++||+++|++||+|++|.+.+.||||||+|.+.+||.+|++.|+|..+. +|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 357899999999999999999999999999999999999999999999999999999999987553 7888866
No 32
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4e-14 Score=132.42 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=64.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCC--cee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~--~~~----RI~F~r~ 639 (1100)
.++++||||||+.+++|+||+++|++||.|.+|++.++||||||+|.+.+||.+|++.|+|. .+. +|+|++.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 46899999999999999999999999999999999999999999999999999999999863 332 6677654
No 33
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.4e-14 Score=132.94 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=66.3
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCC--ce----eEEEEeec
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH--FS----WRVKFMDV 639 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~--~~----~RI~F~r~ 639 (1100)
..++++||||||+.+++|+||+++|++||.|.+|++.+.||||||+|++.++|.+|++.|+|. .+ .+|+|++.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 457899999999999999999999999999999999999999999999999999999998853 23 38888865
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.9e-13 Score=121.75 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=70.0
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
+.+.-..+++||||||+.+++++||+++|++||+|+.|.+.. .+|||||+|.+.+||.+|++.|+|..+.
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 344556789999999999999999999999999999999965 4789999999999999999999998765
Q ss_pred EEEEeecc
Q 001325 633 RVKFMDVG 640 (1100)
Q Consensus 633 RI~F~r~~ 640 (1100)
+|+|+++.
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 89998764
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=122.79 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=68.3
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
.--..+++||||||+.+++++||+++|++||+|.+|.+.+ .||||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3345789999999999999999999999999999999876 6899999999999999999999998765 8888
Q ss_pred eecc
Q 001325 637 MDVG 640 (1100)
Q Consensus 637 ~r~~ 640 (1100)
++..
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8764
No 36
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-14 Score=132.66 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=66.1
Q ss_pred ccccceEEeccCCCc-ccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCc--e----eEEEEeec
Q 001325 567 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHF--S----WRVKFMDV 639 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~-vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~--~----~RI~F~r~ 639 (1100)
..++++||||||+.+ ++|+||+++|++||.|.+|++.+.||||||+|.+.+||.+|++.|+|.. + .+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 457999999999998 9999999999999999999999999999999999999999999997643 3 28888864
No 37
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.6e-14 Score=124.77 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=64.5
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+++||||||+.+++++||+++|++||.|.++.+.+.||||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999998765 555554
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.46 E-value=1.1e-13 Score=122.62 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=65.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
|+++||||||+.+++++||++.|++||+|.++.+... +|||||+|.+.++|.+|++.|+|..+. +|+|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5899999999999999999999999999999998653 899999999999999999999998765 788886
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 81 ~ 81 (96)
T 2x1f_A 81 N 81 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=1.2e-13 Score=118.35 Aligned_cols=70 Identities=14% Similarity=0.229 Sum_probs=64.1
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
|.+||||||+.+++++||++.|++||+|.++.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 578999999999999999999999999999998754 899999999999999999999999765 7777765
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=119.56 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=66.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
+++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4689999999999999999999999999999999965 3789999999999999999999998765 89998
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.46 E-value=1.3e-13 Score=118.59 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=64.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5789999999999999999999999999999999853 5999999999999999999999998765 67665
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=118.62 Aligned_cols=72 Identities=21% Similarity=0.349 Sum_probs=63.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.++.+... +|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999998653 799999999999999999999998765 78777
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 43
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.45 E-value=7.6e-14 Score=128.12 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=64.4
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
|.-||||||...+||++|+++|.+||+|.+|.+..+||||||+|.+.+||..|++.|+|..+. ||+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 778999999999999999999999999999999999999999999999999999999998775 77766
No 44
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=125.02 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=68.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
...++||||||+.+++++||+.+|++||+|.+|.+.+.||||||+|.+.++|..|++.|+|..+. +|+|+++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 45789999999999999999999999999999999999999999999999999999999998765 78888764
No 45
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=121.04 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=65.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.++++||||||+.+++++||+++|++||+|++|.+... ||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 46799999999999999999999999999999998764 799999999999999999999998765 677765
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=122.85 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=68.1
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI 634 (1100)
+.-.++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3446789999999999999999999999999999999854 5899999999999999999999998765 78
Q ss_pred EEeecc
Q 001325 635 KFMDVG 640 (1100)
Q Consensus 635 ~F~r~~ 640 (1100)
+|+++.
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 888663
No 47
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=119.12 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=65.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.++++||||||+.+++++||+++|++||+|++|.+. ||||||+|.+.+||.+|++.|+|..+. +|+++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 468999999999999999999999999999999987 899999999999999999999998765 88888654
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=120.44 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=65.5
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
-.+++.||||||+.+++++||+++|++||+|++|.+.. .||||||+|.+.++|..|++.|+|..+. +|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45789999999999999999999999999999999863 5789999999999999999999998765 6777
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 655
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=119.99 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=66.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceE-EEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF-FFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V-~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
+++++||||||+.+++++||+++|++||+|.++ ++.. .+|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 8765 4899999999999999999999998765 8888
Q ss_pred eecc
Q 001325 637 MDVG 640 (1100)
Q Consensus 637 ~r~~ 640 (1100)
+++.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8653
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=126.95 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=65.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.+.++||||||+.+++|++|+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|+.+. +|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999999852 6899999999999999999999999765 77777
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
+.
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 51
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.3e-13 Score=121.03 Aligned_cols=75 Identities=12% Similarity=0.230 Sum_probs=65.6
Q ss_pred cccccccceEEeccCCC-cccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 564 MDIFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~-~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
++-..++++||||||+. +++++||+++|++||+|.+|.+ .||||||+|.+.++|..|++.|+|..+. +|++++
T Consensus 4 ~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred cccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 45567899999999999 9999999999999999999998 4899999999999999999999998775 899986
Q ss_pred cc
Q 001325 639 VG 640 (1100)
Q Consensus 639 ~~ 640 (1100)
..
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=121.52 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=67.4
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-------CceEEEEecCHHHHHHHHHhh-cCCcee----EE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------KGFALVEYINIIDAIRAREYI-RNHFSW----RV 634 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-------rgfAFVeF~~i~DAv~A~~~L-qG~~~~----RI 634 (1100)
-.++++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||.+|++.| +|..+. +|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356899999999999999999999999999999999765 899999999999999999999 888765 88
Q ss_pred EEeecc
Q 001325 635 KFMDVG 640 (1100)
Q Consensus 635 ~F~r~~ 640 (1100)
+|+++.
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 888764
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=120.98 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=66.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI 634 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4689999999999999999999999999999999863 4689999999999999999999998765 78
Q ss_pred EEeecc
Q 001325 635 KFMDVG 640 (1100)
Q Consensus 635 ~F~r~~ 640 (1100)
+++++.
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 887664
No 54
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=125.72 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=66.5
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..++||||||+.+++++||+++|++||+|..|.+.+.||||||+|.+.+||..|++.|+|..+. +|+|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3679999999999999999999999999999999999999999999999999999999998765 8888865
No 55
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=118.36 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=65.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
..+++||||||+.+++++||+++|++||+|.++.+. ++||||+|.+.+||.+|++.|+|..+. +|+++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 468999999999999999999999999999999987 569999999999999999999998765 88888664
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.3e-13 Score=119.91 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=67.3
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~----rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
-..+++||||||+.+++++||+++|++||+|++|.+... +|||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 356799999999999999999999999999999999764 899999999999999999999998765 888886
Q ss_pred cc
Q 001325 639 VG 640 (1100)
Q Consensus 639 ~~ 640 (1100)
+.
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 63
No 57
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.43 E-value=3.5e-13 Score=121.07 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=65.0
Q ss_pred cccccceEEeccCCC-cccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 566 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~-~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
--.++++||||||+. +++++||+++|++||.|.++.+ .||||||+|.+.++|.+|++.|+|..+. +|+|++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345789999999998 9999999999999999999998 4899999999999999999999998764 7777754
No 58
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.42 E-value=3e-13 Score=121.05 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=65.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCce-------eEEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS-------WRVK 635 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~-------~RI~ 635 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.+||.+|++.|+|..+ .+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999865 89999999999999999999999753 3788
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
|++.
T Consensus 93 ~a~~ 96 (105)
T 2dnh_A 93 FADT 96 (105)
T ss_dssp ESCS
T ss_pred ECcc
Confidence 8865
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4e-13 Score=121.52 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|+|++..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 3579999999999999999999999999999999865 5789999999999999999999998765 88888764
No 60
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=117.90 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=65.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
..+++||||||+.+++++||+.+|++||+|.++.+. ++||||+|.+.++|..|++.|+|..+. +|+++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 468999999999999999999999999999999987 569999999999999999999998765 88888764
No 61
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.42 E-value=3.7e-13 Score=122.55 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=80.1
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec---cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeeccC
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 641 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~---~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~~ 641 (1100)
+++.||||||+.+++++||+.+|++||+|.++.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~- 85 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN- 85 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC-
Confidence 579999999999999999999999999999999854 6899999999999999999999999775 88888651
Q ss_pred CCCcccccccccccceEEEccCCCcchhHHHHHhhhcccc
Q 001325 642 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY 681 (1100)
Q Consensus 642 gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~ 681 (1100)
+ .. +++.....+++|...+.+++.
T Consensus 86 --~----------~~----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 --R----------AF----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp --H----------HT----TTSCHHHHHHHHHHHHHHHCC
T ss_pred --h----------hh----hhhhHhHhHHHHHHHHHHhCC
Confidence 0 11 456667777777777666553
No 62
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.42 E-value=3.1e-13 Score=116.61 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=64.6
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.+++||||||+.+++++||+++|++||+|.++.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999843 7899999999999999999999998775 77777
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.42 E-value=2.9e-13 Score=126.95 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=66.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++|+||+++|++||+|++|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3899999999999999999999998775 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
+..
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.7e-13 Score=120.86 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=66.5
Q ss_pred ccccceEEeccCCCcccHHHHH----HHhhccCCcceEEEecc---CceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFFPI---KGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~----~~F~~fGpLe~V~~~~~---rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
+...++||||||+.+++++||+ ++|++||+|.+|.+... ||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 99999999999999754 899999999999999999999998765 788
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
++++
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8765
No 65
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=121.21 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..+++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 3689999999999999999999999999999999984 5999999999999999999999999775 8888865
Q ss_pred c
Q 001325 640 G 640 (1100)
Q Consensus 640 ~ 640 (1100)
.
T Consensus 93 ~ 93 (103)
T 2d9p_A 93 K 93 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=118.05 Aligned_cols=71 Identities=10% Similarity=0.216 Sum_probs=63.9
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
-.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 35789999999999999999999999999999999964 4789999999999999999999998765 6666
Q ss_pred e
Q 001325 637 M 637 (1100)
Q Consensus 637 ~ 637 (1100)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.42 E-value=3.4e-13 Score=120.87 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=66.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce---e----EE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS---W----RV 634 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~---~----RI 634 (1100)
..+++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+ . +|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4578999999999999999999999999999999865 579999999999999999999999875 3 88
Q ss_pred EEeecc
Q 001325 635 KFMDVG 640 (1100)
Q Consensus 635 ~F~r~~ 640 (1100)
++++..
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 888663
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=118.91 Aligned_cols=72 Identities=17% Similarity=0.323 Sum_probs=64.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcc-eEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee--------
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW-------- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe-~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~-------- 632 (1100)
.++++||||||+.+++|+||+++|++||+|. ++.+.+. +|||||+|.+.+||.+|++.|+|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4689999999999999999999999999999 9998654 499999999999999999999998543
Q ss_pred EEEEeec
Q 001325 633 RVKFMDV 639 (1100)
Q Consensus 633 RI~F~r~ 639 (1100)
+|+|+++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 5667655
No 69
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-13 Score=123.67 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=66.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
..+++||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999764 599999999999999999999998775 899987
Q ss_pred cc
Q 001325 639 VG 640 (1100)
Q Consensus 639 ~~ 640 (1100)
..
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.41 E-value=3.6e-13 Score=117.65 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=66.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
.++++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|.+.+||..|++.|+|..+. +|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4679999999999999999999999999999999875 6899999999999999999999998765 7888876
Q ss_pred c
Q 001325 640 G 640 (1100)
Q Consensus 640 ~ 640 (1100)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 71
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.2e-13 Score=119.76 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=64.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCC-cceEEEeccCceEEEEecCHHHHHHHHHhhcC-Ccee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFFPIKGFALVEYINIIDAIRAREYIRN-HFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGp-Le~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG-~~~~----RI~F~r~~ 640 (1100)
..+++||||||+.+++++||+++|++||. |+.+.+ ..+|||||+|.+.+||..|++.|+| ..+. +|+++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 36799999999999999999999999999 777766 6799999999999999999999999 6654 88888663
No 72
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=2.9e-13 Score=119.38 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=71.8
Q ss_pred ccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEe-ccCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001325 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1100)
Q Consensus 557 ~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~-~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--- 632 (1100)
++-+|..+.--.++++||||||+.+++++||+++|++||.|..+... ..||||||+|.+.+||..|++.|+|..+.
T Consensus 3 ~~~~p~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 3 MLEDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp CSSCTTTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccCccccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34456666677789999999999999999999999999999988322 37999999999999999999999998764
Q ss_pred -EEEEeecc
Q 001325 633 -RVKFMDVG 640 (1100)
Q Consensus 633 -RI~F~r~~ 640 (1100)
+|+++++.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 78888664
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.2e-13 Score=119.71 Aligned_cols=73 Identities=23% Similarity=0.292 Sum_probs=66.0
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
-..+++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999864 3799999999999999999999998765 8888
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+++
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 765
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.41 E-value=4.8e-13 Score=119.08 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=62.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce--------EEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~--------V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~- 632 (1100)
.++++||||||+.+++++||++.|++||.|.. +.+.. .||||||+|.+.+||..|++.|+|..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45799999999999999999999999999999 88764 3789999999999999999999998765
Q ss_pred ---EEEEe
Q 001325 633 ---RVKFM 637 (1100)
Q Consensus 633 ---RI~F~ 637 (1100)
+|+++
T Consensus 91 ~~l~V~~A 98 (99)
T 2la6_A 91 NPIKVSFA 98 (99)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEec
Confidence 66665
No 75
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.8e-13 Score=119.24 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=65.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|++|.+.. .||||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4689999999999999999999999999999999865 4599999999999999999999998765 78888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.6e-13 Score=122.38 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=66.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc----CceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~----rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..+++||||||+.+++++||++.|++||+|++|.+... ||||||+|.+.+||.+|++.|+|..+. +|+++++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999999754 899999999999999999999998765 7777765
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6.8e-13 Score=120.45 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=69.9
Q ss_pred CCccccccccccceEEeccCCCcccHHHHHHHhhccCCcc--------eEEEec------cCceEEEEecCHHHHHHHHH
Q 001325 559 EDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE--------HFFFFP------IKGFALVEYINIIDAIRARE 624 (1100)
Q Consensus 559 g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe--------~V~~~~------~rgfAFVeF~~i~DAv~A~~ 624 (1100)
|.|...+--..+++||||||+.+++++||+++|++||.|. .|.+.. .||||||+|.+.++|..|++
T Consensus 4 g~p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 4 GSSGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp SCCCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 3444444456789999999999999999999999999999 588764 37899999999999999999
Q ss_pred hhcCCcee----EEEEeecc
Q 001325 625 YIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 625 ~LqG~~~~----RI~F~r~~ 640 (1100)
.|+|..+. +|++++..
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp HHTTCEETTEECEEECSSCC
T ss_pred HcCCCccCCCEEEEEECCCC
Confidence 99998775 78887653
No 78
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.40 E-value=4.4e-13 Score=122.04 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=66.7
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||.|++|.+... +|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46899999999999999999999999999999998764 799999999999999999999998765 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 93 ~~~ 95 (115)
T 2dgo_A 93 TRK 95 (115)
T ss_dssp SCC
T ss_pred cCC
Confidence 654
No 79
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=7e-13 Score=126.93 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=65.7
Q ss_pred ccccccce--EEeccCCCcccHHHHHHHhhccCCcceEEEeccCce-EEEEecCHHHHHHHHHhhcCCcee------EEE
Q 001325 565 DIFSASKQ--LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF-ALVEYINIIDAIRAREYIRNHFSW------RVK 635 (1100)
Q Consensus 565 dv~~~Sr~--LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgf-AFVeF~~i~DAv~A~~~LqG~~~~------RI~ 635 (1100)
|-..+++- ||||||+..+++++|+++|++||.|.+|+++..+|| |||+|.+.+||.+|++.|+|..+. ||.
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 44456655 579999999999999999999999999999775697 999999999999999999999762 788
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
|+++
T Consensus 98 ~Ak~ 101 (124)
T 2e5i_A 98 YARP 101 (124)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8875
No 80
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=3.9e-13 Score=118.46 Aligned_cols=73 Identities=12% Similarity=0.330 Sum_probs=66.5
Q ss_pred ccccceEEeccCCCcccHHHHH----HHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~----~~F~~fGpLe~V~~~---~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
-.++++||||||+.+++++||+ +.|++||+|.++.+. ..+|||||+|.+.++|..|++.|+|..+. +|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3678999999999999999999 999999999999987 47899999999999999999999998765 788
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
|+++
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 8765
No 81
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.3e-13 Score=119.07 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+++++||||||+.+++++||+++|++||+|.++.+... ||||||+|.+.++|..|++.|+|..+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 46899999999999999999999999999999998653 899999999999999999999998654
No 82
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.8e-13 Score=120.80 Aligned_cols=77 Identities=12% Similarity=0.175 Sum_probs=68.6
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~~----R 633 (1100)
+.+--.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.+||..|++.|+|..+. +
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3444567899999999999999999999999999999998764 899999999999999999999998775 7
Q ss_pred EEEeec
Q 001325 634 VKFMDV 639 (1100)
Q Consensus 634 I~F~r~ 639 (1100)
|++++.
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 888764
No 83
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.40 E-value=4.8e-13 Score=122.74 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=65.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..+++||||||+.+++++||++.|++||+|+++.+. ||||||+|.+.+||..|++.|+|..+. +|+|++.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 568999999999999999999999999999999998 999999999999999999999998765 7777765
No 84
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.3e-13 Score=118.73 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=65.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.++++||||||+.+++++||+++|++||+|.+|++.. .||||||+|.+.+||..|++.|+|..+. +|++++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3578999999999999999999999999999999875 3599999999999999999999998765 777776
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 95 ~ 95 (100)
T 2do4_A 95 S 95 (100)
T ss_dssp C
T ss_pred C
Confidence 5
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.39 E-value=7.4e-13 Score=122.32 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=69.0
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----E
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----R 633 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----R 633 (1100)
-+.-.++++||||||+.+++++||+++|++||.|.+|.+... +|||||+|.+.++|.+|++.|+|..+. +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344556899999999999999999999999999999998654 899999999999999999999998775 8
Q ss_pred EEEeecc
Q 001325 634 VKFMDVG 640 (1100)
Q Consensus 634 I~F~r~~ 640 (1100)
|+|+.+.
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9998654
No 86
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=8e-13 Score=119.98 Aligned_cols=71 Identities=15% Similarity=0.232 Sum_probs=65.6
Q ss_pred ccccceEEeccCCCc-ccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 567 FSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~-vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
-..+++||||||+.+ ++++||+++|++||+|++|.+ .||||||+|.+.+||.+|++.|+|..+. +|++++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 345799999999999 999999999999999999999 7999999999999999999999998765 7888864
No 87
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.8e-13 Score=117.47 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=65.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++ |+|..+. +|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999864 58999999999999999999 9998765 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 88
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=120.60 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=61.7
Q ss_pred cceEEeccCCCcccHHHHHHHhhccC-CcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCc-e----eEEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHF-S----WRVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fG-pLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~-~----~RI~F~ 637 (1100)
|+.||||||+.++||+||+++|++|| .|.+|++. ..||||||+|.+.+||.+|++.|++.. + .+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 89999874 368999999999999999999986543 2 278887
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 66
No 89
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7.1e-13 Score=117.86 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=63.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEE-EeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~-~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..+++||||||+.+++++||+++|++||+|+... .-..+|||||+|.+.+||..|++.|+|..+. +|+++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4578999999999999999999999999997322 2358999999999999999999999998775 7888765
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5e-13 Score=120.34 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=64.9
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCC-cceEEEe-------ccCceEEEEecCHHHHHHHHHhhc-C-Ccee----EE
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYIR-N-HFSW----RV 634 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGp-Le~V~~~-------~~rgfAFVeF~~i~DAv~A~~~Lq-G-~~~~----RI 634 (1100)
+.++||||||+.+++++||+++|++||+ |.+|.+. ..||||||+|.+.+||..|++.|+ | ..+. +|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999999 9999987 579999999999999999999996 4 5544 88
Q ss_pred EEeecc
Q 001325 635 KFMDVG 640 (1100)
Q Consensus 635 ~F~r~~ 640 (1100)
+++++.
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 888764
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.1e-13 Score=120.14 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=65.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCce-----------
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS----------- 631 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~----------- 631 (1100)
..+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.++|..|++.|+|..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3568999999999999999999999999999999865 489999999999999999999999876
Q ss_pred -eEEEEeec
Q 001325 632 -WRVKFMDV 639 (1100)
Q Consensus 632 -~RI~F~r~ 639 (1100)
.+|+|+++
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 27888876
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5e-13 Score=119.50 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=66.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4689999999999999999999999999999999864 3689999999999999999999998765 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 663
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.38 E-value=6e-13 Score=119.52 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=65.7
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
..++++||||||+.+++++||+++|++||.|.+|.+. |+||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3578999999999999999999999999999999886 689999999999999999999998765 88888654
No 94
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.6e-13 Score=119.39 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=65.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||+|.++.+... +|||||+|.+.+||..|++.|+|..+. +|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45799999999999999999999999999999998753 799999999999999999999998765 78887
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.38 E-value=8.9e-13 Score=119.17 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..++.||||||+.+++++||+++|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999998643 799999999999999999999998775 78888
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 96
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=4e-13 Score=147.85 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=88.5
Q ss_pred ccccceEEeccC--CCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccCCCC
Q 001325 567 FSASKQLWLGSF--GPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTK 644 (1100)
Q Consensus 567 ~~~Sr~LWVGnL--g~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~r~~~gsr 644 (1100)
-.||++|||||+ +.++||+||+++|++||.|++|++.++||||||+|.+.+||.+|+++|+|+.+ ++ +.|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~--~~----~~g-- 86 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV--VD----DLG-- 86 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE--EC----TTS--
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc--cc----ccC--
Confidence 468999999995 67899999999999999999999999999999999999999999999999765 11 111
Q ss_pred cccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhh
Q 001325 645 GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 645 g~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
.+..|||-++.... ..+ ..+..+.+.=.+.=+|-+.+|+..-++.|.
T Consensus 87 ---------~~~~ly~~~~~~~~-----~~~---------~~~~~lp~Gl~~~p~fis~~Ee~~Ll~~i~ 133 (345)
T 3tht_A 87 ---------QKITLYLNFVEKVQ-----WKE---------LRPQALPPGLMVVEEIISSEEEKMLLESVD 133 (345)
T ss_dssp ---------CEEECEEEECSSEE-----EEE---------EECCSCCTTEEEETTCSCHHHHHHHHTTCC
T ss_pred ---------CceEEEEEEeeccc-----ccc---------cccccCCCceEEEcCcCCHHHHHHHHHhcc
Confidence 23467887774332 111 112234443345568999999987666665
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.38 E-value=7.9e-13 Score=120.62 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=65.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.++|.+|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 46799999999999999999999999999999998653 589999999999999999999998765 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 663
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.4e-13 Score=118.81 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=66.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 4689999999999999999999999999999999864 4799999999999999999999998775 88888
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
+.
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 75
No 99
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=6.9e-13 Score=114.46 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=63.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhcc----C-------CcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee--EE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRF----G-------PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RV 634 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~f----G-------pLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI 634 (1100)
.++++||||||+.+++++||++.|++| | +|.++++.++||||||+|.+.+||.+|+ .|+|..+. +|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 468999999999999999999999999 8 9999999999999999999999999999 99998765 44
Q ss_pred EEee
Q 001325 635 KFMD 638 (1100)
Q Consensus 635 ~F~r 638 (1100)
++.|
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 4433
No 100
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1e-12 Score=116.97 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=66.1
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhcc--CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~f--GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
+...++++||||||+.+++++||+++|++| |.|.++.+ .||||||+|.+.++|..|++.|+|..+. +|+|++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 456789999999999999999999999999 88888876 4799999999999999999999998765 778876
Q ss_pred cc
Q 001325 639 VG 640 (1100)
Q Consensus 639 ~~ 640 (1100)
+.
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 101
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=8.7e-13 Score=118.87 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=65.5
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhc------CCcee--
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR------NHFSW-- 632 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~Lq------G~~~~-- 632 (1100)
..++++||||||+.+++++||+++|++||+|.+|.+. ..+|||||+|.+.++|..|++.|+ |..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3568999999999999999999999999999999986 368999999999999999999999 77654
Q ss_pred --EEEEeec
Q 001325 633 --RVKFMDV 639 (1100)
Q Consensus 633 --RI~F~r~ 639 (1100)
+|+++++
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 7777765
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.37 E-value=5.5e-13 Score=121.91 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=63.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||+|.++.+.+ .||||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4579999999999999999999999999999999864 3799999999999999999999998765 66665
No 103
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.37 E-value=4e-13 Score=117.99 Aligned_cols=71 Identities=10% Similarity=-0.059 Sum_probs=61.6
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+++||||||+.+++++||+++|++||.|.++.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 468999999999999999999999999999766542 6799999999999999999999998775 666654
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 104
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=8.8e-13 Score=117.25 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=64.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
.++++|||||+ +++++||+++|++||+|.+|.+-..||||||+|.+.+||.+|++.|+|..+. +|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 46789999997 9999999999999999999999889999999999999999999999998765 7777765
No 105
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.36 E-value=1.2e-12 Score=117.59 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=64.7
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36789999999999999999999999999999999874 5899999999999999999999998765 66665
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=116.38 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999865 4689999999999999999999998765 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 653
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=125.44 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=65.3
Q ss_pred cccceEEeccCCCcccHHHHH----HHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 568 SASKQLWLGSFGPEASEAHIR----FQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~----~~F~~fGpLe~V~~~---~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
.++++||||||+.+++++||+ ++|++||+|.+|.+. ..||||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 568999999999999999976 689999999999985 47999999999999999999999998765 8888
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
++.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 108
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.36 E-value=8e-13 Score=113.97 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=58.1
Q ss_pred cceEEeccCCCcc------cHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 570 SKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 570 Sr~LWVGnLg~~v------te~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
++.||||||+.++ +++||+++|++||+|.++.+.+ +||||||+|.+.+||.+|++.|+|..+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 5789999999999 8899999999999999999863 5899999999999999999999998653
No 109
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.36 E-value=2.1e-12 Score=119.56 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=67.1
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
-..++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||..|++.|+|..+. +|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999975 5899999999999999999999998665 7777
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 755
No 110
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=120.23 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=64.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++.|+|..+. +|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4678999999999999999999999999999999864 4789999999999999999999998765 77776
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 111
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.35 E-value=1.4e-12 Score=124.27 Aligned_cols=74 Identities=20% Similarity=0.357 Sum_probs=68.0
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
.-..+++||||||+.+++++||+++|++||.|++|++.+ +||||||+|.+.++|..|++.|+|..+. +|+|+++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 345789999999999999999999999999999999988 5999999999999999999999998765 8888865
No 112
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.35 E-value=1.4e-12 Score=126.39 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=63.4
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCce-EEEEecCHHHHHHHHHhhcCCce----e--EEEEeec
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGF-ALVEYINIIDAIRAREYIRNHFS----W--RVKFMDV 639 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgf-AFVeF~~i~DAv~A~~~LqG~~~----~--RI~F~r~ 639 (1100)
-.||||||+..+||++|+++|++||+|.+|+++. .||| |||+|.+.+||.+|++.|+|..+ | ||+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3566999999999999999999999999999876 7899 99999999999999999999977 2 8999976
No 113
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=7.4e-13 Score=118.31 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=65.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhc-cCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCc-ee----EEEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDR-FGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF-SW----RVKF 636 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~-fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~-~~----RI~F 636 (1100)
.++++||||||+.+++++||+++|++ ||.|.+|.+.. .||||||+|.+.++|..|++.|+|.. +. +|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46799999999999999999999999 99999999875 48999999999999999999999987 54 7777
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+++
T Consensus 87 a~~ 89 (104)
T 2dhg_A 87 AIP 89 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 114
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=121.71 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=60.9
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
-.++++||||||+.+++++||+++|++||+|+.|.+.+ .||||||+|.+.+||.+|++.|+|..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35789999999999999999999999999999999854 4899999999999999999999997664
No 115
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=7.4e-13 Score=121.13 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=64.7
Q ss_pred ccceEEeccCCCcccHHHHH---HHhhccCCcceEEEec---------cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 569 ASKQLWLGSFGPEASEAHIR---FQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~---~~F~~fGpLe~V~~~~---------~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
..++||||||+.+++++||+ ++|++||+|.++.+.+ .||||||+|.+.+||.+|++.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 9999999999999974 3479999999999999999999998765
Q ss_pred EEEEeecc
Q 001325 633 RVKFMDVG 640 (1100)
Q Consensus 633 RI~F~r~~ 640 (1100)
+|+|+.+.
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 77877654
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.9e-12 Score=117.62 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=64.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce---------eEEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS---------WRVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~---------~RI~F~r 638 (1100)
...++||||||+.+++++||+++|++||+|..+.+... |||||+|.+.+||..|++.|+|+.+ .+|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45789999999999999999999999999999999887 9999999999999999999999855 2677775
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 92 ~ 92 (108)
T 1x4c_A 92 P 92 (108)
T ss_dssp C
T ss_pred C
Confidence 5
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.34 E-value=1.3e-12 Score=113.10 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=63.3
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+++||||||+.+++++||++.|++||+|.++.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999864 3899999999999999999 99999775 677765
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 118
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.34 E-value=1.2e-12 Score=131.45 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=64.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCce----e--EEEEeecc
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS----W--RVKFMDVG 640 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~LqG~~~----~--RI~F~r~~ 640 (1100)
...||||||+..+||++|+++|++||.|++|+++. .||||||+|.+.+||.+|++.|+|..+ + ||+|+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 45689999999999999999999999999999874 578999999999999999999999987 2 89998763
No 119
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=118.51 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=60.8
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCC--cceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc----e----e
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGP--LEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF----S----W 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGp--Le~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~----~----~ 632 (1100)
.-++||||||++++||++|+++|++||. +.+|++.+ +||||||+|.+.+||.+|++.|+|.. + .
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3478999999999999999999999996 55888743 68999999999999999999999973 2 2
Q ss_pred EEEEeec
Q 001325 633 RVKFMDV 639 (1100)
Q Consensus 633 RI~F~r~ 639 (1100)
+|+|+++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 7777754
No 120
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.6e-12 Score=117.33 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=64.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
...++||||||+.+++|+||+++|++||+|++|++.. .||||||+|.+.++|.+|++.|+| .+. +|+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4579999999999999999999999999999999965 468999999999999999999998 443 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 543
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.33 E-value=1.4e-12 Score=123.50 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=65.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5689999999999999999999999999999999863 6899999999999999999999998765 67766
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 122
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.2e-12 Score=115.71 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=64.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
.++++||||||+.+++++||+++|+.|| |.+|.+.. .+|||||+|.+.++|.+|+ .|+|..+. +|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4579999999999999999999999999 99999864 3789999999999999999 99998765 8888
Q ss_pred eecc
Q 001325 637 MDVG 640 (1100)
Q Consensus 637 ~r~~ 640 (1100)
+++.
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 123
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=2.2e-12 Score=113.00 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=64.3
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
.+++||||||+.+++++||+++|++| .|.++.+...||||||+|.+.+||.+|++.|+|..+. +|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 9999999889999999999999999999999998765 6777644
No 124
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.32 E-value=3.8e-12 Score=122.03 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=68.3
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI 634 (1100)
+...++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.++|..|++.|+|..+. +|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999853 4689999999999999999999998775 89
Q ss_pred EEeecc
Q 001325 635 KFMDVG 640 (1100)
Q Consensus 635 ~F~r~~ 640 (1100)
+|+++.
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 998653
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.4e-12 Score=116.87 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=64.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcc----eEEEe--ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE----HFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe----~V~~~--~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++||.|+ .+.+. ..||||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 4689999999999999999999999999994 44433 37899999999999999999999998775 89998
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 126
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=1.6e-12 Score=115.03 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=61.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
...++||||||+.+++++||+++|++||.|..+.+.. .||||||+|.+.+||.+|++.|+|..+. +|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3468999999999999999999999999998655432 5899999999999999999999998765 67776
Q ss_pred e
Q 001325 638 D 638 (1100)
Q Consensus 638 r 638 (1100)
+
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 127
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.31 E-value=1.5e-12 Score=114.53 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=58.0
Q ss_pred ceEEeccCCCcccHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fG--pLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+||||||+.+++++||+++|++|| .|.++++.. .||||||+|.+.+||.+|++.|+|..+. +|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 999999753 5789999999999999999999998765 565554
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 128
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.31 E-value=2.6e-12 Score=120.23 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=63.1
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccC-CcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fG-pLe~V~~~--~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
..++||||||+.+++++||++.|++|| .|..+.+. ..||||||+|.+.+||.+|++.|+|..+. +|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467999999999999999999999999 99999985 48999999999999999999999998765 566554
No 129
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.30 E-value=2.4e-12 Score=115.93 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=62.2
Q ss_pred ccceEEeccCCC------cccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 569 ASKQLWLGSFGP------EASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~------~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
.++.||||||+. ++++++|+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 999999999999999999999852 6799999999999999999999997543
Q ss_pred -EEEEee
Q 001325 633 -RVKFMD 638 (1100)
Q Consensus 633 -RI~F~r 638 (1100)
+|++++
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 566654
No 130
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.30 E-value=1.7e-12 Score=113.12 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=61.1
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.+ |.+|++.|+|..+. +|+++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999864 4899999999999 99999999998765 7888765
No 131
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.29 E-value=2.6e-12 Score=118.34 Aligned_cols=71 Identities=11% Similarity=0.192 Sum_probs=64.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||+|++|.+.. .+|||||+|.+.++|..|+ .|+|..+. +|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999999999999864 3899999999999999999 89998765 78887
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
+.
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 132
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.4e-12 Score=117.32 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=63.7
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||.|.+|.+. ..||||||+|.+.++|..|+ .|+|..+. +|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999999999999999996 36799999999999999999 99998765 67776
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
+.
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 133
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=5.2e-12 Score=118.63 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=65.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.++++|||||+ +++++||+++|++||+|.+|.+...||||||+|.+.++|..|++.|+|..+. +|+|+++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46899999996 7999999999999999999999899999999999999999999999999765 88888763
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.4e-12 Score=116.23 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=60.7
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..++||||||+.++|+++|++.|++||+|.+|.+.. .||||||+|.+.++|..|++ |+|..+. +|++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 468999999999999999999999999999999875 68999999999999999999 8887654 55544
No 135
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.28 E-value=6.2e-12 Score=120.09 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
....+++||||||+.+++++||+++|++||.|+++.+.. .||||||+|.+.++|..|++.|+|..+. +|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999999999999999854 6799999999999999999999998764 888
Q ss_pred Eeecc
Q 001325 636 FMDVG 640 (1100)
Q Consensus 636 F~r~~ 640 (1100)
|++++
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 88763
No 136
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=6.2e-12 Score=112.67 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=63.7
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||+++|++|| |.+|.+.. .||||||+|.+.+||.+|+ .|+|..+. +|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4679999999999999999999999998 99999864 3789999999999999999 89998765 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 137
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.28 E-value=8.3e-12 Score=111.24 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=62.7
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEE-----eccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-----FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~-----~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
-..+++||||||+.+++++||+++|++||.|....+ -..||||||+|.+.+||.+|++ |+|..+. +|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 346789999999999999999999999998877222 2469999999999999999999 9998765 78887
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.28 E-value=3.3e-12 Score=115.76 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=58.8
Q ss_pred cccceEEeccCCCcc------cHHHHHHHhhccCCcceEEEe----ccCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 568 SASKQLWLGSFGPEA------SEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~v------te~dL~~~F~~fGpLe~V~~~----~~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
..+++||||||+.++ |+++|+++|++||+|.+|.+. ..||||||+|.+.++|..|++.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 447899999999999 899999999999999999987 3689999999999999999999999754
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.28 E-value=3.4e-12 Score=120.75 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=64.3
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcce--------EEE---eccCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFF---FPIKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~--------V~~---~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--- 632 (1100)
-.++++||||||+.++|+++|+++|++||.|.. +.. -..||||||+|.+.++|.+|++.|+|..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346899999999999999999999999999987 332 248999999999999999999999998775
Q ss_pred -EEEEeec
Q 001325 633 -RVKFMDV 639 (1100)
Q Consensus 633 -RI~F~r~ 639 (1100)
+|+|+++
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 7888865
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=120.44 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=63.8
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce--EEEec------cCceEEEEecCHHHHHHHHHhhcCC----cee---
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--FFFFP------IKGFALVEYINIIDAIRAREYIRNH----FSW--- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~--V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~----~~~--- 632 (1100)
.++++||||||+.+++|+||+++|++||.|.. |++.. .||||||+|.+. ||.+|++.|+|. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 88753 579999999999 999999999998 554
Q ss_pred -EEEEeecc
Q 001325 633 -RVKFMDVG 640 (1100)
Q Consensus 633 -RI~F~r~~ 640 (1100)
+|+|+++.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 78888653
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.27 E-value=7.7e-12 Score=108.40 Aligned_cols=62 Identities=11% Similarity=0.304 Sum_probs=55.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
..+++||||||+.++++++|++.|++||+|.++.+.. .+|||||+|.+.++|.+|++. +|..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~ 76 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR 76 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE
Confidence 4679999999999999999999999999999999864 378999999999999999976 4443
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.3e-12 Score=113.09 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=62.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe--ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~--~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.++++||||||+.+++++||+++|++||.|.-++.. ..||||||+|.+.+||.+|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 468999999999999999999999999988432221 26899999999999999999999998764 78888653
No 143
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.27 E-value=5.9e-12 Score=115.25 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=59.7
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
..|--..+++||||||+.+++++||+++|++||+|++|.+.+ .||||||+|.+.+||.+|++.| |..+.
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 445557789999999999999999999999999999999864 4799999999999999999876 34332
Q ss_pred EEEEeec
Q 001325 633 RVKFMDV 639 (1100)
Q Consensus 633 RI~F~r~ 639 (1100)
+|+++.+
T Consensus 97 ~V~~a~~ 103 (109)
T 2rs2_A 97 DPKVAFP 103 (109)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 6777755
No 144
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=115.25 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=60.9
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
-...++||||||+.+++++||++.|++|| |.+|.+.. .||||||+|.+.++|.+|+ .|+|..+. +|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45689999999999999999999999999 99999864 3789999999999999999 99998765 677
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
++++
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 7654
No 145
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.27 E-value=8.5e-12 Score=117.82 Aligned_cols=70 Identities=24% Similarity=0.390 Sum_probs=63.5
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcCCcee-------EEEE
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW-------RVKF 636 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG~~~~-------RI~F 636 (1100)
.+++||||||+.++|+++|++.|++||.|+++.+.+. +|||||+|.+.+||..|++.|+|..+. +|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 6789999999999999999999999999999999764 899999999999999999999997542 7777
Q ss_pred ee
Q 001325 637 MD 638 (1100)
Q Consensus 637 ~r 638 (1100)
++
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.26 E-value=6.1e-12 Score=123.20 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=62.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEE
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 635 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fG--pLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~ 635 (1100)
...++||||||+.+++|+||+++|++|| .|.+|++.. .||||||+|.+.+||.+|++.|+|..+. +|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999853 5899999999999999999999998765 777
Q ss_pred Eeec
Q 001325 636 FMDV 639 (1100)
Q Consensus 636 F~r~ 639 (1100)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 7754
No 147
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.26 E-value=5.6e-12 Score=106.50 Aligned_cols=60 Identities=15% Similarity=0.322 Sum_probs=55.2
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+||||||+.+++++||++.|++||+|.++.+.. .||||||+|.+.++|.+|++ |+|..+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~ 66 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN 66 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC
Confidence 589999999999999999999999999999864 36899999999999999998 9988764
No 148
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.26 E-value=5.9e-12 Score=119.87 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=66.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|.+|++.|+|..+. +|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999853 5789999999999999999999999875 88888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
+++
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 149
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=5.6e-12 Score=106.46 Aligned_cols=60 Identities=15% Similarity=0.362 Sum_probs=54.7
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
++||||||+.+++++||++.|++||+|.++.+.+ .||||||+|.+.++|.+|++.|+ ..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 5799999999999999999999999999999865 37899999999999999999887 444
No 150
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=4.3e-12 Score=113.78 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=63.2
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
-...++||||||+.+++++||+++|++||+|.+|.+... ||||||+|.+.++|..|++. +|..+. +|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 456899999999999999999999999999999998653 68999999999999999998 887664 5666
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+.+
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 654
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.26 E-value=9.6e-12 Score=110.53 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=52.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
.+..+||||||+.++||+||++.|++||+|.++.+.. +||||||+|.+.++|.+ |+|..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~ 68 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGED 68 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCC
Confidence 4678999999999999999999999999999999876 79999999999999983 56654
No 152
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=9.3e-12 Score=113.73 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=63.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
...++||||||+.+++++||+++|++||+|.+|.+.. .||||||+|.+.++|..|++. +|..+. +|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4579999999999999999999999999999999865 378999999999999999998 777654 77777
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
.+.
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 153
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.25 E-value=1e-11 Score=120.85 Aligned_cols=72 Identities=26% Similarity=0.320 Sum_probs=65.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.++++++|+.+|++||+|.+|.+... +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999754 799999999999999999999998765 78888
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
.+
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 154
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=8.1e-12 Score=131.63 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=66.9
Q ss_pred cccceEEeccCCCcc---------cHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce-------
Q 001325 568 SASKQLWLGSFGPEA---------SEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS------- 631 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~v---------te~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~------- 631 (1100)
..+++||||||+.++ +|++|+++|++||+|++|.+.+.||||||.|.+.++|..|+++|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 468999999999998 8999999999999999999999999999999999999999999999988
Q ss_pred ---------eEEEEeec
Q 001325 632 ---------WRVKFMDV 639 (1100)
Q Consensus 632 ---------~RI~F~r~ 639 (1100)
.+|+++..
T Consensus 212 ~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANE 228 (240)
T ss_dssp GGGGGGSCCCEEEECC-
T ss_pred ccccCCCCEEEEEEccC
Confidence 28888854
No 155
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.24 E-value=6.7e-12 Score=115.88 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=58.3
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
..++||||||+.+++++||+++|++||+|..+.+... |||||+|.+.+||.+|++.|+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4689999999999999999999999999999999877 99999999999999999999998764
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.3e-12 Score=110.39 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=59.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCc-eEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rg-fAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
+.+++||||||+.+++++||+++|++||+|.+|.+.+..| ||||+|.+.++|.+|++ |+|..+. +|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 3578999999999999999999999999999995544222 99999999999999999 9998765 555553
No 157
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=110.53 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=61.0
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHh---hcCCceeEEEEe
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY---IRNHFSWRVKFM 637 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~---LqG~~~~RI~F~ 637 (1100)
-.++++||||||+.+++++||+++|++||+|..|.+.. .||||||+|.+.++|.+|++. |+| +.++|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g-~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG-RWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETT-EEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCC-eEEEEEec
Confidence 35678999999999999999999999999999999864 368999999999999999996 333 22377777
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 158
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=9.4e-12 Score=108.57 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=51.0
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHH
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRA 622 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A 622 (1100)
..+++||||||+.+++|+||+++|++||+|.+|.+.. .||||||+|.+.++|.+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 3579999999999999999999999999999999876 799999999999999754
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.5e-11 Score=113.01 Aligned_cols=73 Identities=15% Similarity=0.053 Sum_probs=63.4
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCc-ceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EE
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL-EHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RV 634 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpL-e~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI 634 (1100)
+.-.+.++||||||+.+++++||+++|+.||.| ++|.+.. .||||||+|.+.+||..|++. +|..+. +|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 444678999999999999999999999999999 8888853 789999999999999999988 887654 56
Q ss_pred EEee
Q 001325 635 KFMD 638 (1100)
Q Consensus 635 ~F~r 638 (1100)
+++.
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 6553
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.6e-11 Score=114.75 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=63.7
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
.+++||||||+.+++++||++.|++||.|+++.+.. ++|||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 567999999999999999999999999999999864 4889999999999999999999998765 677764
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.2e-11 Score=107.38 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=63.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEE-Eec--cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFF-FFP--IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~-~~~--~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..+++||||||+.+++++||+++|++||+|.++. +.. ..+.|||+|.+.++|..|++.|+|..+. +|+|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 654 4456999999999999999999998765 7888765
No 162
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.22 E-value=2.5e-11 Score=118.50 Aligned_cols=75 Identities=28% Similarity=0.392 Sum_probs=68.8
Q ss_pred cccccceEEeccCCCcccHHHHHHHhhccC-CcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEee
Q 001325 566 IFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFMD 638 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~vte~dL~~~F~~fG-pLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~-----RI~F~r 638 (1100)
+..+++.||||||+.++++++|+++|++|| .|.+|.+.+ .+|||||+|.+.+||..|++.|+|..+. +|+|++
T Consensus 116 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 116 IFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 456899999999999999999999999999 999999976 9999999999999999999999998764 788887
Q ss_pred cc
Q 001325 639 VG 640 (1100)
Q Consensus 639 ~~ 640 (1100)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 163
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=2.1e-11 Score=108.53 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=61.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe---ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeecc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 640 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~---~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~~ 640 (1100)
.++++||||||+.+++++||+++|+.|+.+.-+.-. ..||||||+|.+.+||..|++.|+|..+. +|+|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 468999999999999999999999999754433321 24799999999999999999999998765 88888763
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.2e-12 Score=114.38 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEe---------ccCceEEEEecCHHHHHHHHHhh---cCCc
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYI---RNHF 630 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~---------~~rgfAFVeF~~i~DAv~A~~~L---qG~~ 630 (1100)
..+++||||||+.+++|+||+++|++||+|. +.+. ..||||||+|.+.++|.+|++.| +|+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 4579999999999999999999999999999 5543 35899999999999999999999 6654
No 165
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.2e-11 Score=105.53 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=62.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
...+.||||||+.+++++||++.|++| .|.+|.+.. .+|||||+|.+.+||..|++ |+|..+. +|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 357899999999999999999999999 999999864 48899999999999999999 9998775 666665
Q ss_pred c
Q 001325 639 V 639 (1100)
Q Consensus 639 ~ 639 (1100)
+
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 4
No 166
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=1.3e-11 Score=104.05 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=53.5
Q ss_pred eEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 572 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 572 ~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
+||||||+.+++++||++.|++||+|.++.+.. .||||||+|.+.++|.+|++. +|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE
Confidence 589999999999999999999999999999853 589999999999999999995 66554
No 167
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.4e-11 Score=108.88 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
-...++||||||+.++||+||++.|+.||.+ +|++.. .||||||+|.+.+||.+|++ |+|+.+. +|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3567899999999999999999999999965 888753 58899999999999999995 7988765 55555
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 168
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-12 Score=118.96 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=65.1
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce--------EEEec------cCceEEEEecCHHHHHHHHHhhcCCcee-
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~--------V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~- 632 (1100)
.++++||||||+.+++++||+++|++||+|.. |.+.. .||||||+|.+.++|..|++.|+|..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 56899999999999999999999999999998 77653 4799999999999999999999998765
Q ss_pred ---EEEEeecc
Q 001325 633 ---RVKFMDVG 640 (1100)
Q Consensus 633 ---RI~F~r~~ 640 (1100)
+|+++++.
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 78888654
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.19 E-value=3.2e-11 Score=118.12 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=66.7
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
...+++|||+||+.+++++||+++|++||.|+.|.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 356799999999999999999999999999999999764 899999999999999999999998765 7888
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+.+
T Consensus 202 a~~ 204 (216)
T 2qfj_A 202 AVT 204 (216)
T ss_dssp CSS
T ss_pred ecC
Confidence 865
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.19 E-value=3.3e-11 Score=123.99 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=67.3
Q ss_pred cccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccC-ceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001325 564 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1100)
Q Consensus 564 ~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~r-gfAFVeF~~i~DAv~A~~~LqG~~~~-----RI~F~ 637 (1100)
+....++++||||||+.+++++||+++|++||.|.+|.+.+.+ |||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 201 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 201 LSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred ccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3445678999999999999999999999999999999999866 99999999999999999999998764 67776
Q ss_pred e
Q 001325 638 D 638 (1100)
Q Consensus 638 r 638 (1100)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 4
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.19 E-value=3.9e-11 Score=112.19 Aligned_cols=64 Identities=9% Similarity=0.183 Sum_probs=59.1
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
.+++||||||+.++++++|+++|++||+|+.+.+.+. +|||||+|.+.++|.+|++.|+|..+.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 4678999999999999999999999999999998653 799999999999999999999998663
No 172
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.18 E-value=3.9e-11 Score=121.44 Aligned_cols=76 Identities=28% Similarity=0.397 Sum_probs=69.3
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccC-CcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCcee-----EEEEe
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW-----RVKFM 637 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fG-pLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~-----RI~F~ 637 (1100)
++..+++.||||||+.++++++|+++|++|| .|.+|.+.+ .||||||+|.+.+||..|++.|+|..+. +|.|+
T Consensus 146 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 146 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp TCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred cCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 4567899999999999999999999999999 999999976 9999999999999999999999998664 78888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
++.
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 763
No 173
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.8e-11 Score=113.67 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=56.7
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce-EEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~-V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
...++||||||+.+++++||+++|+.||.|.+ +.+. ..+|||||+|.+.+||..|++ |+|..+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 45689999999999999999999999999987 3333 268999999999999999999 9998765
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.17 E-value=8.6e-12 Score=111.33 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=58.8
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHH---hhcCCceeEEEEe
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRARE---YIRNHFSWRVKFM 637 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~---~LqG~~~~RI~F~ 637 (1100)
.+++||||||+.+++++||+++|++||+|.++.+.. .||||||+|.+.++|.+|++ .|+|+.+ +|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l-~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKL-KLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEEC-EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEE-EEEEC
Confidence 468999999999999999999999999999999875 57999999999999999999 5666432 34444
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.17 E-value=5.7e-11 Score=118.32 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=66.3
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..++++||||||+.+++++||+++|++||+|.+|.+.. .+|||||+|.+.+||..|++.|+|..+. +|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 36789999999999999999999999999999999864 5799999999999999999999998765 78887
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.17 E-value=3.4e-11 Score=114.02 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=62.1
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
+++||||||+.+++++||++.|++||+|+++.+.+. +|||||+|.+.+||.+|++.|+|..+. +|+|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 789999999999999999999999999999998764 799999999999999999999998765 55543
No 177
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=4.6e-11 Score=115.53 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=66.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||.|.++.+.+. +|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999998764 899999999999999999999998775 78887
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.15 E-value=7.8e-11 Score=110.85 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=58.9
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc------CceEEEEecCHHHHHHHHHhhcCCce
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~------rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
.+++|||+||+.++++++|+++|++||.|+.+.+.+. +|||||+|.+.+||.+|++.|+|..+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 4689999999999999999999999999999998764 59999999999999999999999866
No 179
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.14 E-value=3.9e-11 Score=123.92 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=62.3
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccC--CcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFG--PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fG--pLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
..++||||||+.++||+||+++|++|| .|.+|++.. .||||||+|.+.++|.+|++.|+|+.+. +|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 999999853 5799999999999999999999998764 6776
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 644
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.14 E-value=5.9e-11 Score=118.91 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=64.6
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec----cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~----~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
..+++||||||+.+++++||+++|++||.|+.+.+.+ .||||||+|.+.++|..|++.|+|..+. +|+++++
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3567899999999999999999999999999999864 6899999999999999999999998775 6777643
No 181
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.13 E-value=6e-11 Score=110.18 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=58.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGp---Le~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
...+.||||||+.++||+||++.|+.||. |.+|++.. .||||||+|.+.+||.+|++ |+|+.+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 35789999999999999999999999999 89998863 58999999999999999999 9997765
No 182
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.5e-10 Score=104.80 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=57.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcce-EEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEH-FFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~-V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
...+.||||||+.+++|+||++.|++||.|.+ |.+. +.||||||+|.+.+||.+|++. +|+.+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 45789999999999999999999999999987 7664 3689999999999999999998 887665
No 183
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.10 E-value=6.7e-11 Score=107.55 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=58.4
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGp---Le~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
...+.||||||+.++|++||++.|+.||. |.+|.+.. .||||||+|.+.+||.+|++ |+|..+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 46789999999999999999999999998 89999853 68899999999999999999 9997764
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.09 E-value=9.2e-11 Score=110.55 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=62.5
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.+++++||++.|++||.|+++.+.. +||||||+|.+.++|.+|++ |+|..+. +|+|+
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 3578999999999999999999999999999999864 46899999999999999998 8877654 77777
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
++
T Consensus 164 ~p 165 (167)
T 2cjk_A 164 EP 165 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.09 E-value=1.2e-10 Score=117.86 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=61.5
Q ss_pred ccccccceEEeccCCCcccHHHHHHHhhccCCc--ceEEEecc----CceEEEEecCHHHHHHHHHhhcCCce
Q 001325 565 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL--EHFFFFPI----KGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 565 dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpL--e~V~~~~~----rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
.+..++++||||||+.++|++||+++|+.||.| .+|++++. +|||||+|.+.+||..|+..|+|..+
T Consensus 118 ~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 118 RIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 356789999999999999999999999999999 89998864 58999999999999999999999854
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.08 E-value=2.3e-10 Score=105.65 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=61.6
Q ss_pred cccceEEeccCCC-----cccHHHHHHHhhccCCcceEEEec-------cCceEEEEecCHHHHHHHHHhhcCCcee---
Q 001325 568 SASKQLWLGSFGP-----EASEAHIRFQIDRFGPLEHFFFFP-------IKGFALVEYINIIDAIRAREYIRNHFSW--- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~-----~vte~dL~~~F~~fGpLe~V~~~~-------~rgfAFVeF~~i~DAv~A~~~LqG~~~~--- 632 (1100)
.+|+.|+|+||-. +.+++||+++|++||.|.+|++.. +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999973 358999999999999999999863 4899999999999999999999998654
Q ss_pred -EEEEeec
Q 001325 633 -RVKFMDV 639 (1100)
Q Consensus 633 -RI~F~r~ 639 (1100)
+++|++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 6777653
No 187
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.08 E-value=1.2e-10 Score=112.43 Aligned_cols=63 Identities=14% Similarity=-0.058 Sum_probs=57.7
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCC---cceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGP---LEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGp---Le~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
..++||||||+.++||+||++.|+.||. |++|++.. +||||||+|.+.+||.+|++ |+|+.+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 4689999999999999999999999999 88998863 58999999999999999999 9997665
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.08 E-value=1.4e-10 Score=130.54 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=66.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
.++++||||||+.++|+++|..+|++||.|..|.+.. .+|||||+|.+.++|..|++.|+|..+. +|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4678999999999999999999999999999999864 4899999999999999999999999875 78888
Q ss_pred ec
Q 001325 638 DV 639 (1100)
Q Consensus 638 r~ 639 (1100)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 189
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.06 E-value=2.4e-10 Score=110.39 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=61.3
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec------cCceEEEEecCHHHHHHHHHhhcCCcee----EEEEe
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 637 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~------~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~ 637 (1100)
..+++||||||+.+++++||+++|++||.|+.|.+.. .+|||||+|.+.+||.+|++. +|..+. +|+++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999875 379999999999999999986 566553 78888
Q ss_pred ecc
Q 001325 638 DVG 640 (1100)
Q Consensus 638 r~~ 640 (1100)
.+.
T Consensus 181 ~~k 183 (196)
T 1l3k_A 181 LSK 183 (196)
T ss_dssp C--
T ss_pred CCh
Confidence 653
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.05 E-value=1.4e-10 Score=110.55 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=62.5
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEe-ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~-~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
.+++||||||+.+++++||+++|++||.|..+... ..+|||||+|.+.++|.+|++.|+|..+. +|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 67899999999999999999999999999888211 38999999999999999999999998764 6777754
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.6e-10 Score=103.02 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred cccceEEeccCCCcc-----------cHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCcee--
Q 001325 568 SASKQLWLGSFGPEA-----------SEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW-- 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~v-----------te~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~LqG~~~~-- 632 (1100)
++++.|+|.||-... +++||+++|++||+|.+|.+.. .||||||+|.+.+||.+|++.|+|..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 578999999995443 3789999999999999998853 7999999999999999999999998764
Q ss_pred --EEEEeec
Q 001325 633 --RVKFMDV 639 (1100)
Q Consensus 633 --RI~F~r~ 639 (1100)
+|+|+++
T Consensus 93 ~l~v~~a~~ 101 (112)
T 2dit_A 93 QITAQAWDG 101 (112)
T ss_dssp ECEEEECCS
T ss_pred EEEEEEeCC
Confidence 8888865
No 192
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.9e-10 Score=107.17 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=61.6
Q ss_pred ccccce-EEeccCCCcccHHH----HHHHhhcc-CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEE
Q 001325 567 FSASKQ-LWLGSFGPEASEAH----IRFQIDRF-GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 636 (1100)
Q Consensus 567 ~~~Sr~-LWVGnLg~~vte~d----L~~~F~~f-GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F 636 (1100)
++|+.+ ||||||+-++++++ |+++|++| |+|-+|+ .|||||.|.++++|.+|++.|+|..+. ||.|
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 467888 99999999999988 66899999 5999993 399999999999999999999999776 8999
Q ss_pred eec
Q 001325 637 MDV 639 (1100)
Q Consensus 637 ~r~ 639 (1100)
+..
T Consensus 81 A~~ 83 (96)
T 2diu_A 81 TPK 83 (96)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.02 E-value=3.6e-10 Score=116.72 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=70.9
Q ss_pred ccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEecc-----CceEEEEecCHHHHHHHHHhhcC-Cc
Q 001325 557 FDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRN-HF 630 (1100)
Q Consensus 557 ~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~-----rgfAFVeF~~i~DAv~A~~~LqG-~~ 630 (1100)
++|-+.-.....++++||||||+.++|+++|+++|++||+|.+|.+... +|||||+|.+.+||..|++.|+| ..
T Consensus 83 i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 83 LKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp ETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred ECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 4566666667778999999999999999999999999999999998754 89999999999999999999954 33
Q ss_pred e-------eEEEEeec
Q 001325 631 S-------WRVKFMDV 639 (1100)
Q Consensus 631 ~-------~RI~F~r~ 639 (1100)
+ .+|++++.
T Consensus 163 ~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp ESSSSCCBCEEEECCC
T ss_pred EecCCCceEEEeeccc
Confidence 2 27777754
No 194
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.00 E-value=2.4e-10 Score=110.89 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=56.2
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
...++||||||+.++||+||++.|++|| |.+|++.. +||||||+|.+.+||.+|+ .|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 4568999999999999999999999999 66888753 6899999999999999999 78988765
No 195
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=5.7e-10 Score=103.83 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=56.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
...+.||||||+.+++|+||++.|+.| .|.+|.+.. .||||||+|.+.+||.+|+ .|+|+.+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 346799999999999999999999999 899999853 6899999999999999999 69997665
No 196
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=5e-10 Score=106.49 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=55.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCc----ceEEEe-----ccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPL----EHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpL----e~V~~~-----~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
..++||||||+.++||+||++.|+.||+| ++|++. ++||||||+|.+.+||.+|++. +|+.+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 46899999999999999999999999986 688875 2689999999999999999996 775543
No 197
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.88 E-value=1.5e-09 Score=109.26 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcC
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN 628 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG 628 (1100)
..++||||||+.++++++|++.|++||+|.+|++.+ .||||||+|.+.++|..|++.+.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999864 689999999999999999987654
No 198
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.85 E-value=2.8e-09 Score=102.11 Aligned_cols=62 Identities=13% Similarity=0.021 Sum_probs=53.9
Q ss_pred cccceEEeccCCCcccHHHHHHHhhccCCcc--eEEEec-----cCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 568 SASKQLWLGSFGPEASEAHIRFQIDRFGPLE--HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe--~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
...+.||||||+.++||+||++.|+.| .|. +|.+.. +||||||+|.+.+||.+|++. +|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE
Confidence 457889999999999999999999999 566 888753 689999999999999999985 66544
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.85 E-value=4.7e-09 Score=96.81 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=60.2
Q ss_pred cccceEEeccCCCc----------ccHHHHHHHhhccCCcceEEEec--------cCceEEEEecCHHHHHHHHHhhcCC
Q 001325 568 SASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNH 629 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~----------vte~dL~~~F~~fGpLe~V~~~~--------~rgfAFVeF~~i~DAv~A~~~LqG~ 629 (1100)
+||+-|-|-|+-.. ..++||+++|++||+|.+|++.+ ++|||||+|.+.++|.+|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46888888887432 24589999999999999999864 4799999999999999999999998
Q ss_pred cee----EEEEeec
Q 001325 630 FSW----RVKFMDV 639 (1100)
Q Consensus 630 ~~~----RI~F~r~ 639 (1100)
.+. ++.|.+.
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 764 7777754
No 200
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.85 E-value=4.7e-09 Score=100.19 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=83.0
Q ss_pred ccCceEEEEecCHHHHHHHHHhhcCCcee--EEEEeecc------CCCCcccccccccccceEEEccCCCcchhHHHHHh
Q 001325 604 PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG------LGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHE 675 (1100)
Q Consensus 604 ~~rgfAFVeF~~i~DAv~A~~~LqG~~~~--RI~F~r~~------~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE 675 (1100)
..+|||||+|.+.++|..|++.++|.... .+.+.... ...............+.||||+++..+++|+|...
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 37899999999999999999998865322 11111100 00000111112246899999999999999999999
Q ss_pred hhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 676 SYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 676 ~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
|..+|.+..+.+. ....++.++|+|.+.++|..|+..|+++..+
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 9887765555442 2345678999999999999999999987654
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=4.6e-09 Score=96.92 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=53.8
Q ss_pred CcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCC--ceeEEEEeecc
Q 001325 580 PEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNH--FSWRVKFMDVG 640 (1100)
Q Consensus 580 ~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~--~~~RI~F~r~~ 640 (1100)
++++|+||+++|++||.|.+|++.. .||||||+|.+.+||..|++.++|. +..+|+|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCC
Confidence 6799999999999999999999974 9999999999999999999998874 23488888653
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.80 E-value=7.4e-09 Score=98.01 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=60.7
Q ss_pred cccceEEeccCCCc-----ccHHHHHHHhhccCCcceEEEecc----------CceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPE-----ASEAHIRFQIDRFGPLEHFFFFPI----------KGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~-----vte~dL~~~F~~fGpLe~V~~~~~----------rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
++|+.|.|.|+-.. -.++||+++|++||+|.+|++.++ +|||||+|.+.++|.+|++.|+|+...
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 37999999998532 357999999999999999998652 489999999999999999999998654
Q ss_pred ----EEEEeec
Q 001325 633 ----RVKFMDV 639 (1100)
Q Consensus 633 ----RI~F~r~ 639 (1100)
+++|.+.
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 6777643
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.77 E-value=3.1e-09 Score=97.69 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=50.9
Q ss_pred eccCCCcccHHHHHHHh------------hccCCcceEEEec-----cCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 575 LGSFGPEASEAHIRFQI------------DRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 575 VGnLg~~vte~dL~~~F------------~~fGpLe~V~~~~-----~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+++|+.++++++|++.| ++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 67888888888887766 9999999999975 4899999999999999999999998764
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.1e-08 Score=100.46 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=58.1
Q ss_pred ceEEeccC----CCcccHHHHHHHhhccCCcceEEEe------ccCceEEEEecC----HHH----HHHHHH--hhcCCc
Q 001325 571 KQLWLGSF----GPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYIN----IID----AIRARE--YIRNHF 630 (1100)
Q Consensus 571 r~LWVGnL----g~~vte~dL~~~F~~fGpLe~V~~~------~~rgfAFVeF~~----i~D----Av~A~~--~LqG~~ 630 (1100)
.+|||||| +..++|.+|+..|+.||+|.++.+. ++||||||+|.| +.+ |..|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999985 479999999997 544 788888 788887
Q ss_pred ee----EEEEeec
Q 001325 631 SW----RVKFMDV 639 (1100)
Q Consensus 631 ~~----RI~F~r~ 639 (1100)
+. ||++-|-
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 64 6776655
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.72 E-value=2.9e-08 Score=93.53 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=58.4
Q ss_pred ccceEEeccCCCc----------ccHHHHHHHhhccCCcceEEEec--cCceEEEEecCHHHHHHHHHhhcCCcee----
Q 001325 569 ASKQLWLGSFGPE----------ASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFSW---- 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~----------vte~dL~~~F~~fGpLe~V~~~~--~rgfAFVeF~~i~DAv~A~~~LqG~~~~---- 632 (1100)
+|+-|-+-|+-.. -.++||+++|++||.|.+|++.+ +||||||+|.+.+||.+|++.|+|+.+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 5666666666442 34679999999999999999976 5899999999999999999999998664
Q ss_pred EEEEeec
Q 001325 633 RVKFMDV 639 (1100)
Q Consensus 633 RI~F~r~ 639 (1100)
+++|.+.
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 6777753
No 206
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.69 E-value=8.6e-09 Score=98.24 Aligned_cols=115 Identities=18% Similarity=0.157 Sum_probs=85.2
Q ss_pred ccCceEEEEecCHHHHHHHHHhh-cCCce---eEEEEeeccC-------CCCcccccccccccceEEEccCCCcchhHHH
Q 001325 604 PIKGFALVEYINIIDAIRAREYI-RNHFS---WRVKFMDVGL-------GTKGVINGVAVGSCFHVYVGNIPNQWAKDEI 672 (1100)
Q Consensus 604 ~~rgfAFVeF~~i~DAv~A~~~L-qG~~~---~RI~F~r~~~-------gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEEL 672 (1100)
.-+|+++|+|.+.++|..|++.| +|+.+ ++++++.... ..............+.||||+++..++.++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 35899999999999999999999 66654 4666553210 0000011122346899999999999999999
Q ss_pred HHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 673 LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 673 fsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..-|..+|.+..+.+. ...++.++|+|.+.++|..|+..|+++...
T Consensus 91 ~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVA-RNPPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp HHHHHHHSCEEEEEEC-SSSCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred HHHHHhhCCEEEEEEe-eCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 9999987655554432 125889999999999999999999987643
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=3e-07 Score=88.46 Aligned_cols=62 Identities=6% Similarity=0.011 Sum_probs=58.5
Q ss_pred cccccceEEeccCCCc-ccHHHHHHHhhccCCcceEEEeccCceEEEEecC-HHHHHHHHHhhc
Q 001325 566 IFSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYIN-IIDAIRAREYIR 627 (1100)
Q Consensus 566 v~~~Sr~LWVGnLg~~-vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~-i~DAv~A~~~Lq 627 (1100)
.+.+.+-|+||||+.+ ++++||+++|..||+|..|.+.+++.+|||.|.+ ..+|.+|++.|+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 3567889999999999 9999999999999999999999999999999999 899999999995
No 208
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.17 E-value=1.8e-06 Score=82.25 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=57.0
Q ss_pred eEEEEecCHHHHHHHHHhhcCCcee-E--EEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCC
Q 001325 608 FALVEYINIIDAIRAREYIRNHFSW-R--VKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP 684 (1100)
Q Consensus 608 fAFVeF~~i~DAv~A~~~LqG~~~~-R--I~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgP 684 (1100)
++|.+|.|+.=|..|+..|+|.... + +.+.++ .....+++.||||+++..++.++|...|..++.+..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp -----------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 4566666666666666666664321 1 111111 011236889999999999999999999998876665
Q ss_pred ceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 685 YMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 685 v~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.+. ....++.++|+|.+.++|..|+..|+++...
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5442 2345678999999999999999999987654
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.06 E-value=4.6e-06 Score=84.12 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=50.5
Q ss_pred ccHHHHHHHhhccCCcceEEEe----------ccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEee
Q 001325 582 ASEAHIRFQIDRFGPLEHFFFF----------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 638 (1100)
Q Consensus 582 vte~dL~~~F~~fGpLe~V~~~----------~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r 638 (1100)
-.++||.++|++||.|.+|.+. +.+||+||+|.+.++|.+|++.|+|+... ++.|.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3678999999999999999996 57899999999999999999999998654 677764
No 210
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.01 E-value=3.7e-06 Score=81.82 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=54.4
Q ss_pred EEecCHHHHHHHHHhhcCCcee------EEEEeecc-CCCCccc----------ccccccccceEEEccCCCcchhHHHH
Q 001325 611 VEYINIIDAIRAREYIRNHFSW------RVKFMDVG-LGTKGVI----------NGVAVGSCFHVYVGNIPNQWAKDEIL 673 (1100)
Q Consensus 611 VeF~~i~DAv~A~~~LqG~~~~------RI~F~r~~-~gsrg~~----------~Gva~~~Sr~LwVG~Iss~~~kEELf 673 (1100)
++|++.+||.+|+..|+++... +.+..... .+....+ ......+++.||||+++..++.++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7999999999999999997654 12211110 0000000 01112357889999999999999999
Q ss_pred HhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 674 HESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 674 sE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.-|..+|.+..+.+. + ....+.++|+|.+.++|..|+..|+++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 999987765555442 2 224689999999999999999999987544
No 211
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.97 E-value=1.3e-06 Score=98.47 Aligned_cols=129 Identities=9% Similarity=0.041 Sum_probs=88.3
Q ss_pred HHHHHhhccCCcceEEEe--------ccCceE-----EEEecCHHHHHHHHHhhcCCcee-----------------EEE
Q 001325 586 HIRFQIDRFGPLEHFFFF--------PIKGFA-----LVEYINIIDAIRAREYIRNHFSW-----------------RVK 635 (1100)
Q Consensus 586 dL~~~F~~fGpLe~V~~~--------~~rgfA-----FVeF~~i~DAv~A~~~LqG~~~~-----------------RI~ 635 (1100)
+|.++|..+|||..+... ...+|+ |++|.+..+|..|+..+...... .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999887211 123455 89998877766555443322110 111
Q ss_pred EeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHH
Q 001325 636 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMA 711 (1100)
Q Consensus 636 F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~ 711 (1100)
...+... ..+...+++.|||||++..++.++|...|..+|.+..+.+. + ....+.++|+|.+.++|..|+.
T Consensus 88 ~~~p~~~-----~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 88 MWDPHND-----PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred hcCCccc-----ccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHH
Confidence 1111100 01113467899999999999999999999988876666542 2 3357889999999999999999
Q ss_pred Hhhhhccc
Q 001325 712 HLRQHRKS 719 (1100)
Q Consensus 712 ~l~~~r~~ 719 (1100)
.|+++...
T Consensus 163 ~lng~~i~ 170 (437)
T 3pgw_S 163 HADGKKID 170 (437)
T ss_pred HcCCCEEC
Confidence 99987655
No 212
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=1.4e-05 Score=69.92 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=58.3
Q ss_pred cccccccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 647 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 647 ~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.+....+++.||||+++..++.|+|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 444445579999999999999999999999987765555442 2 334678999999999999999999987643
No 213
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=1.7e-05 Score=70.14 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=55.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++++|...|..++.+..+.+ ...++.++|+|.+.++|..|++.|+++...
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH--VKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE--CSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE--eCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 347899999999999999999999987765554443 344789999999999999999999987643
No 214
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.84 E-value=1.2e-05 Score=68.77 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..+|....+.+ .+ ...++.++++|.+.++|..|++.|+++...
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457899999999999999999999998775555543 12 335678999999999999999999987654
No 215
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=3.8e-05 Score=69.25 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=56.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++|+|..-|..++.+..+.+. +-..++.++|+|.+.++|..|++.|+++...
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3478999999999999999999999987766655542 3445679999999999999999999987654
No 216
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=3.6e-05 Score=68.33 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=55.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|..-|..++.+..+.+ ..+++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~--~~~kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI--HKDKGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE--ETTTTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE--ecCCCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 47899999999999999999999998776655443 356899999999999999999999987654
No 217
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=2.8e-05 Score=67.85 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=54.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|..-|..++.+..+.+. ++.++|+|.+.++|..|+..|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 3478999999999999999999999987655555443 789999999999999999999986544
No 218
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=3.5e-05 Score=68.38 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=57.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..++.+..+.+ .+ ...++.++|+|.+.++|..|++.|+++...
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347999999999999999999999998887766654 22 345788999999999999999999987654
No 219
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=3.7e-05 Score=67.41 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc-eee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv-~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|..-|..++.+..+ .+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999988877666 442 2 335679999999999999999999987654
No 220
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.72 E-value=3e-05 Score=68.48 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=55.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++..+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 70 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG 70 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999987765555442 2 344788999999999999999999987654
No 221
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.70 E-value=5.4e-05 Score=65.12 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=55.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 73 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe
Confidence 368999999999999999999999887755555432 2 344678999999999999999999998765
No 222
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=4.9e-05 Score=67.36 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=56.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..++.||||+++..++.++|...|..++.+. +.+.....++.++|+|.+.++|..|+..|+++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3589999999999999999999999887665 44444467889999999999999999999987644
No 223
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=7e-05 Score=69.41 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 584 EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 584 e~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
-.+|+..|..||.|..+++..++ +||+|++.+.|.+|++ |+|..++ +|+.+.+
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 37899999999999999998876 8999999999999999 9999886 6666654
No 224
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=3.8e-05 Score=67.87 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=55.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..++.+..+.+. ....++.++|+|.+.++|..|++.|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987755555442 2334578999999999999999999987654
No 225
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=4.4e-05 Score=67.80 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=55.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++..++.|+|..-|..+|.+..+.+. ..++.++|+|.+.++|..|+..|+++..+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 47899999999999999999999987766555443 67899999999999999999999987654
No 226
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.68 E-value=3e-05 Score=74.90 Aligned_cols=107 Identities=9% Similarity=0.078 Sum_probs=56.8
Q ss_pred CceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccCCCCcccccccccccceEEEccCCCcchhHHHHHhhhcccc---c
Q 001325 606 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---K 682 (1100)
Q Consensus 606 rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~r~~~gsrg~~~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~---k 682 (1100)
+++.|-+|..++.++-....+.... ...+.|..+.+.+-.....+.||||++|..+++|+|..-|..++. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~g~~~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v 74 (136)
T 2hgl_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSMMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGA 74 (136)
T ss_dssp ----------------------------------------CCSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSS
T ss_pred CccccccccchHHHHhhccCCCccc------CCCCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCce
Confidence 3678888998888888877766532 111111111122223346899999999999999999999998887 4
Q ss_pred CCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 683 GPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 683 gPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.+. + ...++.++|||.+.+||..|++ ++++..+
T Consensus 75 ~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 75 AGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp TTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred eEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 555442 3 4456799999999999999999 8887654
No 227
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.68 E-value=4.9e-05 Score=70.07 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=53.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.+++.||||+++..++.++|...|..+|.+..+.+ ...++.++|||++.++|..|++.|+++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM--MPFKRQALVEFENIDSAKECVTFAADVP 75 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE--ECCCCEEEEEECCHHHHHHHHHHhccCC
Confidence 47999999999999999999999997775555443 3468999999999999999999987653
No 228
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.67 E-value=3.5e-05 Score=69.01 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=53.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|..-|..++.+..+.+. ++.++|+|.+.++|..|++.|+++...
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccC
Confidence 3478999999999999999999999876655544432 568999999999999999999987654
No 229
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=3.3e-05 Score=68.20 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=56.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC-Cceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG-PYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kg-Pv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++|+|...|..++.+. .+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 34799999999999999999999999887666 55442 2 234578999999999999999999987754
No 230
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3.5e-05 Score=69.69 Aligned_cols=67 Identities=13% Similarity=0.000 Sum_probs=55.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 378999999999999999999999987765555442 2 223568999999999999999999987654
No 231
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=4.3e-05 Score=66.67 Aligned_cols=68 Identities=10% Similarity=-0.014 Sum_probs=56.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++++|...|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3479999999999999999999999987766555442 2 234568999999999999999999987654
No 232
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.66 E-value=4.5e-05 Score=69.87 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|...|..+|.+..+.+. ++.++|+|.+.++|..|+..|+++..+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 468999999999999999999999987766666554 789999999999999999999987654
No 233
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=6.9e-05 Score=66.79 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=55.8
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|..-|..++.+..+.+. + -..++.++|+|.+.++|..|+..|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987765555442 2 124779999999999999999999987654
No 234
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=4.2e-05 Score=69.31 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=56.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc----eeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY----MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv----~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.|+|..-|..++.+..+ .......++.++|+|.+.++|..|+..|+++...
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 368999999999999999999999988866433 3334566789999999999999999999987654
No 235
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=5.5e-05 Score=66.16 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA 73 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999987765555442 2 334679999999999999999999987654
No 236
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.65 E-value=4.2e-05 Score=71.17 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=53.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.+++.||||++|..++++||..-|..+|.+..+. -+..++.++|||++.++|.+|+..+++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~--i~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVV--VMPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEE--EEcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4899999999999999999999998766554443 3467899999999999999999999875
No 237
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.64 E-value=4.9e-05 Score=69.02 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=57.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..+|.+..+.+ .+...++.++++|.+.++|..|+..|++....
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46899999999999999999999998876666644 35566889999999999999999999987754
No 238
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=5.3e-05 Score=67.21 Aligned_cols=63 Identities=13% Similarity=0.172 Sum_probs=53.8
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss-~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++. .++.++|...|..++.+..+.+. ++.++|+|.+.++|..|+..|+++...
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3789999999998 99999999999987766655542 789999999999999999999987654
No 239
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=6.1e-05 Score=66.93 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=53.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.|+|..-|..++.+.-+.......++.++|||.+.++|..|+..|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34799999999999999999999988765431111112445789999999999999999999987654
No 240
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=6e-05 Score=65.99 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=53.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccc-cCCceeecCCCCcccccccCCHHHHHHHHHHhhh-hccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ-HRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~-kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~-~r~~ 719 (1100)
.+++.||||+++..++.|+|...|..++. +..+.+ ..++.++|+|.+.++|..|++.|++ +...
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE---cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 46899999999999999999999998775 333333 4578999999999999999999998 5443
No 241
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.63 E-value=3.7e-05 Score=66.10 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=54.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368899999999999999999999987766555442 2 234578999999999999999999987644
No 242
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=6.9e-05 Score=66.78 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 478999999999999999999999987765555442 2 235689999999999999999999987654
No 243
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.62 E-value=9.9e-05 Score=66.82 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=56.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC--------Ccee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG--------PYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kg--------Pv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...++.||||+++..+++++|...|..++.+. .+.+ .+ ...++.++|+|.+.++|..|++.|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999887665 3433 22 334679999999999999999999987655
No 244
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=4.5e-05 Score=70.60 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=53.2
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss-~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.+++.||||+++. .++++||..-|..+|.+..+.+ +.+++.++|||++.+||..|+..|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI--LNKINEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE--CSSSSCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE--EcCCCEEEEEECCHHHHHHHHHHHcCCC
Confidence 3799999999999 9999999998887665555543 4567899999999999999999988753
No 245
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.60 E-value=5.5e-05 Score=65.78 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=56.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee--cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~--Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..++.+..+.+. ....++.++|+|.+.++|..|+..|+++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987765555443 2234678999999999999999999987654
No 246
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.59 E-value=4.8e-05 Score=67.82 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=55.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|...|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 378999999999999999999999987765555442 2 234568999999999999999999987654
No 247
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=6.3e-05 Score=65.90 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=54.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|..-|..++.+..+.+. ++.++|+|.+.++|..|+..|+++...
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC----SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3468999999999999999999999987766555443 458999999999999999999987654
No 248
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.59 E-value=6.7e-05 Score=69.70 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=56.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.+.||||+++..+++++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++..+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3479999999999999999999999987765555442 2 345789999999999999999999987643
No 249
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.58 E-value=4.9e-05 Score=65.27 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=54.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-cC----CCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL----SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-Dl----see~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++..++.++|...|..+|.+..+.+. +- ..++.++++|.+.++|..|++.|+++..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 73 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID 73 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC
Confidence 36889999999999999999999987755555442 22 16789999999999999999999987654
No 250
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=0.0001 Score=65.46 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999988766666542 2 234679999999999999999999987654
No 251
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.57 E-value=6.2e-05 Score=67.45 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=53.2
Q ss_pred cccceEEEccCCC-cchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYVGNIPN-QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss-~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.+++.||||+++. .+++++|...|..+|.+..+.+ .++.++|+|.+.++|..|+..|++...
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4799999999998 9999999999997665555444 378999999999999999999998765
No 252
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.57 E-value=6.8e-05 Score=66.98 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=56.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++..
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 3478999999999999999999999988766666542 2 34568999999999999999999998763
No 253
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=6.9e-05 Score=66.81 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=55.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 379999999999999999999999987765555443 2 244678999999999999999999987654
No 254
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.56 E-value=7.7e-05 Score=67.73 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999987766555442 2 233578999999999999999999987654
No 255
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=9.8e-05 Score=65.90 Aligned_cols=67 Identities=19% Similarity=0.120 Sum_probs=54.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-----cCCCCcccccccCCHHHHHHHHHHh-hhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-----DLSCEGALLMEFRTPEEATTAMAHL-RQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-----Dlsee~aLLmEF~s~eEA~~Ak~~l-~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. ....++.++|+|.+.++|..|+..| +++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 478999999999999999999999987755444431 1234679999999999999999999 776644
No 256
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=3.8e-05 Score=67.69 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-cC------CCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-Dl------see~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. +- ..++.++|+|.+.++|..|+..|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999987766555443 21 34578999999999999999999987655
No 257
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.55 E-value=5.6e-05 Score=66.11 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=55.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.+.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999987765555442 2 233578999999999999999999987644
No 258
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.55 E-value=7.2e-05 Score=68.96 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. .....+.++|+|.+.++|..|++.|+++...
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368899999999999999999999987755555442 2334779999999999999999999997655
No 259
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=5.7e-05 Score=65.91 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=53.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. ++.++|+|.+.++|..|+..|+++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV----KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368999999999999999999999977655544432 458999999999999999999987654
No 260
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=9.5e-05 Score=65.95 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=54.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. ....++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 378999999999999999999999987755554432 2334568999999999999999999987654
No 261
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.54 E-value=4.7e-05 Score=67.62 Aligned_cols=67 Identities=25% Similarity=0.259 Sum_probs=56.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS 76 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 368999999999999999999999988766666543 2 234678999999999999999999987654
No 262
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=5.4e-05 Score=67.49 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999987765555442 2 345689999999999999999999987654
No 263
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.54 E-value=7.3e-05 Score=65.40 Aligned_cols=67 Identities=22% Similarity=0.172 Sum_probs=54.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||++|..+++++|..-|..++.+..+.+ .+ ...++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35799999999999999999999998886665533 22 234578999999999999999999987654
No 264
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=7.9e-05 Score=66.07 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=55.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.|+|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 468999999999999999999999987765555442 2 233478999999999999999999987654
No 265
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=8.3e-05 Score=65.81 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=54.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++ |+++...
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 3478999999999999999999999987766555442 2 3357899999999999999998 8876654
No 266
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=8.6e-05 Score=67.30 Aligned_cols=63 Identities=19% Similarity=0.089 Sum_probs=51.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..++.||||+++..++.++|..-|..++.+..+.+. .+ +.++|||++.++|..|++.|+++..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~--~~-g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RD-GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE--TT-TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe--cC-CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 368999999999999999999999876654444332 12 8999999999999999999987654
No 267
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.53 E-value=7.6e-05 Score=67.91 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=55.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+++.||||+++..++.|+|...|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 57999999999999999999999988776666542 2 233468999999999999999999987655
No 268
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.53 E-value=6.4e-05 Score=64.03 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=53.2
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+..||||++|..++.++|...|..+|....+.+. + ...++.++++|.+.++|..|+..|+++..+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 69 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 69 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC
Confidence 4689999999999999999999987755555442 2 334678999999999999999999987654
No 269
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=8.1e-05 Score=66.50 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=55.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|+..|+++..+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 57899999999999999999999987766655442 3 344678999999999999999999987654
No 270
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.52 E-value=5.5e-05 Score=64.96 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=52.1
Q ss_pred cceEEEccCCCcc------hhHHHHHhhhcccccCCceee--cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~------~kEELfsE~dkag~kgPv~f~--Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
++.||||++|..+ ++++|...|..+|.+..+.+. ....++.++++|.+.++|..|+..|+++...
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 4789999999988 679999999877755554432 2345789999999999999999999987644
No 271
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.52 E-value=7.6e-05 Score=67.56 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=53.8
Q ss_pred ccceEEEccCCCc-chhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~-~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++.. +++++|..-|..++.+..+.+ .++.++|+|++.++|..|+..|+++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4689999999999 999999999998776655554 6789999999999999999999987654
No 272
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.52 E-value=8.4e-05 Score=65.95 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--------cee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgP--------v~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.+.||||+++..+++++|...|..+|.+.. +.+ .+ ...++.++++|.+.++|..|++.|+++..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 36899999999999999999999998886665 433 22 344679999999999999999999987644
No 273
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.51 E-value=8.6e-05 Score=66.89 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=55.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999987765555442 2 334689999999999999999999987654
No 274
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=5.1e-05 Score=72.14 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=55.3
Q ss_pred cccceEEE--ccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYV--GNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwV--G~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.+++.||| |+++..+++|+|...|..+|.+..+.+ ..+++..+|+|++.+||..|+..|+++..
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PPNKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CTTCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 37899999 889999999999999998776555443 34689999999999999999999999864
No 275
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.50 E-value=4.6e-05 Score=66.91 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=53.1
Q ss_pred cccceEEEccCCCcchhHHHH----HhhhcccccCCceee-cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELf----sE~dkag~kgPv~f~-Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|. ..|..+|.+..+.+. ....++.++|+|.+.++|..|+..|+++...
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 378999999999999999988 777765544444332 2245689999999999999999999987653
No 276
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.50 E-value=7.8e-05 Score=66.50 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=54.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 368999999999999999999999987766555442 2 23367899999999999999999998763
No 277
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.50 E-value=8.9e-05 Score=65.85 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=50.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhccc-ccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag-~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
|+.|||+|+|..+++|+|...|..+| ....+.+ .+ ...++.++|+|.+.++|.+|++.+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~ 65 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ 65 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC
Confidence 68999999999999999999999887 4555544 22 5677899999999999999998764
No 278
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.50 E-value=0.00011 Score=64.13 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=53.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||++|..+++++|..-|..+ ....+.+ + ..++.++++|.+.++|..|++.|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i-~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 66 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV-D-RNKRTAFVTLLNGEQAQNAIQMFHQYSFR 66 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE-E-GGGTEEEECCSCHHHHHHHHHHHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE-e-CCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 57899999999999999999999887 5544444 2 67889999999999999999999987654
No 279
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.49 E-value=7.9e-05 Score=66.12 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=52.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++. +.+.-+.+ .++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-g~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKP-GAVERVKK-IRDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTST-TCEEEEEE-CSSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCC-cceEEEEE-eCCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 47899999999999999999999998732 33322222 3679999999999999999999987654
No 280
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.49 E-value=7.7e-05 Score=64.06 Aligned_cols=67 Identities=27% Similarity=0.338 Sum_probs=53.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhccccc-C-------Cc-eeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYK-G-------PY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~k-g-------Pv-~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..++.. | ++ .+....+++.+++||.+.++|..|+ .|+++...
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 3478999999999999999999999887211 2 33 2334566899999999999999999 99887643
No 281
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.49 E-value=8e-05 Score=68.42 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=52.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhh
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
..+++.||||+++..++.|+|...|..+|.+..+.+ ..+++.++|||++.++|..|++.+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM--LKGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--ECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 348999999999999999999999987766554433 44589999999999999999998764
No 282
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00012 Score=67.18 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec------CCCCcccccccCCHHHHHHHHHHh
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD------LSCEGALLMEFRTPEEATTAMAHL 713 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D------lsee~aLLmEF~s~eEA~~Ak~~l 713 (1100)
..++.||||+++..+++|+|..-|..++.+. +.+ .+ ...++.++|||++.++|..|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4689999999999999999999999877665 333 22 355789999999999999999988
No 283
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=9.4e-05 Score=67.93 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=54.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++..++.++|...|..+|.+..+. ....++.++|+|.+.++|..|+..|+++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~--i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 72 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL--LPEGGITAIVEFLEPLEARKAFRHLAYSKFH 72 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE--CCSSSSCEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 578999999999999999999999766554443 3357889999999999999999999997754
No 284
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.48 E-value=7.1e-05 Score=67.71 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=53.5
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...||||++|..++.|+|..-|..+|.+..+.+. + ...++.++|+|.+.++|.+|++.|+++..+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 87 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4579999999999999999999987766555442 2 345568999999999999999999987654
No 285
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.48 E-value=9.7e-05 Score=70.46 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=53.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.+++.||||+++..+++++|...|..+|.+..+.+ +.+++.++|||++.++|..|++.+++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i--~~~kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LKGKNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE--EGGGTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhccC
Confidence 47999999999999999999999998777666654 345899999999999999999988764
No 286
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=8.5e-05 Score=70.19 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=53.8
Q ss_pred cccceEEEccCCCc-chhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 653 GSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~-~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.+++.||||+++.. ++.++|...|..+|.+..+.+ +..++.++|||++.++|..|+.+|++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i--~~~kg~aFVef~~~~~A~~Ai~~l~~~ 85 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL--MRMKSQAFIEMETREDAMAMVDHCLKK 85 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE--ETTTTEEEEECSSHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE--ecCCCEEEEEECCHHHHHHHHHHhccC
Confidence 37999999999998 999999999998776666654 467899999999999999999998764
No 287
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.48 E-value=6.9e-05 Score=68.96 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred cceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+..||||+++..+++|+|..-|..+|.+..+.+. + -..++.++|+|.+.++|..|++.|+++...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5679999999999999999999987766555442 2 224578999999999999999999987654
No 288
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=7.8e-05 Score=68.06 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=55.3
Q ss_pred cccccceEEEccCCCcchhHHHH---HhhhcccccCCceee-cC------CCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 651 AVGSCFHVYVGNIPNQWAKDEIL---HESYKVVYKGPYMVT-DL------SCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 651 a~~~Sr~LwVG~Iss~~~kEELf---sE~dkag~kgPv~f~-Dl------see~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+...+.||||+++..++.|+|. ..|..++.+..+.+. +- ..++.++|+|++.++|..|++.|+++...
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 35578999999999999999999 888877655555442 21 23369999999999999999999987654
No 289
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.47 E-value=0.00013 Score=64.70 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=52.7
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.||||+++..+++++|..-|..++.+..+.+. + .++.++|+|.+.++|..|++.|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 63 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVIC 63 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeEC
Confidence 479999999999999999999987766555442 3 6889999999999999999999987654
No 290
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.46 E-value=7.6e-05 Score=64.01 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=53.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHh-hhhcc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL-RQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l-~~~r~ 718 (1100)
..++.||||+++..++.++|..-|..+|.+..+.+ ..+++.++++|++.++|..|+..| +++..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~--~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV--VQRQQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE--EGGGTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE--ECCCCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 46899999999999999999999987665544433 346789999999999999999988 66543
No 291
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=9e-05 Score=66.56 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=52.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
.+++.||||+++..++.|+|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 468999999999999999999999987765555442 2 3457899999999999999999998
No 292
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.45 E-value=7.9e-05 Score=66.89 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=51.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccc-cCCceee--c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVY-KGPYMVT--D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~-kgPv~f~--D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
.+++.||||+++..++.|+|...|..++. +..+.+. + ...++.++|+|.+.++|..|+..|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 36899999999999999999999998765 4444432 1 2567899999999999999999995
No 293
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.45 E-value=0.00017 Score=65.70 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=57.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c-CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D-LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D-lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...++.||||+++..++.|+|..-|..+|.+..+.+. + ...++.++|+|++.++|..|++.|+++..+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4478999999999999999999999988877766553 2 235789999999999999999999987644
No 294
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00019 Score=63.27 Aligned_cols=68 Identities=22% Similarity=0.160 Sum_probs=55.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
....+.||||+++..+++++|..-|..++.+..+.+ .+ ...++.++|+|.+.++|..|++.|+++..+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 83 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG 83 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346799999999999999999999998876655433 22 234688999999999999999999987654
No 295
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.44 E-value=9.1e-05 Score=66.27 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=55.3
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 478999999999999999999999987766555442 2 234568999999999999999999987654
No 296
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.00022 Score=66.66 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=51.6
Q ss_pred cccceEEeccCCCc-----cc----HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee
Q 001325 568 SASKQLWLGSFGPE-----AS----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 632 (1100)
Q Consensus 568 ~~Sr~LWVGnLg~~-----vt----e~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~ 632 (1100)
+|--++.|-.++++ .. -.+|.+.|..||.+..|+|..++ +||+|++-++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34556777766543 22 26799999999999999999988 9999999999999999 9999887
No 297
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.42 E-value=0.00016 Score=65.59 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=54.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccC--Ccee-ec---CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKG--PYMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kg--Pv~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
...-+.|||||++..++.|+|...|..+|... .+.+ .| ...++..+|+|.+.++|.+|++.|++..
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 44577899999999999999999999888543 3332 23 4567899999999999999999999863
No 298
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.41 E-value=0.00013 Score=64.75 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=53.8
Q ss_pred cccceEEEccCCCcchhHHHH----HhhhcccccCCceee-cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEIL----HESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELf----sE~dkag~kgPv~f~-Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.||||+++..++.++|. .-|..++.+..+.+. +-..++.++|+|.+.++|..|++.|+++...
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~ 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 357899999999999999998 778776655555442 3222788999999999999999999987654
No 299
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.41 E-value=9.8e-05 Score=64.84 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=54.4
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|...|..++...-+ -.....++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 79 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID 79 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3478999999999999999999999887644333 223445678999999999999999999986654
No 300
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=0.00016 Score=63.48 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=52.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCce-eecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~-f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++..++.++|..-|..++.+..+. +..-...+.++|+|.+.++|..|+..|+++..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 588999999999999999999999776555552 221112223999999999999999999997754
No 301
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.40 E-value=8.5e-05 Score=67.74 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=55.1
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+++.||||+++..+++|+|...|..+|.+..+.+. + ...++..+|||.+.++|..|++.|+++..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 57999999999999999999999987766555442 2 344779999999999999999999887654
No 302
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.39 E-value=0.00018 Score=66.58 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=56.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..++.||||+++..++.++|..-|..++.+..+.+. ....++.++|+|.+.++|..|++.|+++...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368899999999999999999999988776666542 2345589999999999999999999987654
No 303
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.36 E-value=0.00012 Score=67.64 Aligned_cols=67 Identities=9% Similarity=-0.048 Sum_probs=56.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.+.||||+++..+++++|...|.++|.+..+.+. | ...++.++|+|++.++|..|++.|+++...
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 478999999999999999999999988776666542 3 345678999999999999999999997654
No 304
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.36 E-value=0.00015 Score=65.63 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=53.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.||||+++..++.++|..-|..++.+..+.+ ..+++.++|+|.+.++|..|+..|+++...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV--FPEKGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5889999999999999999999987665444433 344899999999999999999999987654
No 305
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.36 E-value=0.00024 Score=65.57 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=56.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++++|...|..+|.+..+.+. + ...++.++|+|.+.++|..|+..|+++..+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4578999999999999999999999988766666542 2 335689999999999999999999987654
No 306
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.36 E-value=0.00014 Score=66.26 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=54.6
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.+.||||+++..+++|+|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.+++.-.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 4579999999999999999999999987765555442 2 334578999999999999999998874333
No 307
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=65.06 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=54.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhc-ccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYK-VVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dk-ag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.+++.||||+++..++.++|..-|.. ++.+..+.+. + ...++.++|+|.+.++|..|++.|+++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 46899999999999999999999998 7766555442 2 3346789999999999999999999876
No 308
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.35 E-value=0.00014 Score=64.67 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=53.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.+.||||+++..++.++|...|..++.+....+. ....++.++|+|.+.++|..|++ |+++...
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 468999999999999999999988887744332222 35567899999999999999998 9987654
No 309
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.00015 Score=67.96 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=51.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhh
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
+++.||||+++..+++|+|..-|..+|.+..+.+ +.+++.++|||++.++|..|++.+++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i--~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM--LKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--EcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 6899999999999999999999987776655544 34589999999999999999998864
No 310
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.35 E-value=0.00015 Score=68.56 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=56.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 479999999999999999999999987766665542 2 345779999999999999999999987654
No 311
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.34 E-value=0.00014 Score=67.06 Aligned_cols=63 Identities=19% Similarity=0.114 Sum_probs=50.4
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++..+++|+|...|..++.+..+.+ ...+.++|||++.++|..|++.|+++...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV---YRDGTGVVEFVRKEDMTYAVRKLDNTKFR 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE---CTTSEEEEEESSHHHHHHHHHHHTTCBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE---ecCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5789999999999999999999987664444433 22289999999999999999999987644
No 312
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.33 E-value=0.00015 Score=66.31 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|++.|+++..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 368999999999999999999999987765555442 2 234679999999999999999999987654
No 313
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.32 E-value=0.00014 Score=62.73 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=54.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.||||+++..++.++|...|..++.+..+.+. + ...++.++++|.+.++|..|+ .++++...
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~ 73 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR 73 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 57899999999999999999999987766555442 2 344679999999999999999 88887654
No 314
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00018 Score=64.41 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=53.9
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c----CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D----lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++++|...|..++ +..+.+. + ...++.++|+|.+.++|..|+ .|+++...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 34789999999999999999999999877 5444432 2 344678999999999999999 89887654
No 315
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.31 E-value=0.00021 Score=66.91 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=55.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhccc-ccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVV-YKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag-~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.|||||++..++.|+|..-|..+| .+..+.+..-..++..+|||.+.+||..|++.|+++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~ 93 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR 93 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3578999999999999999999998877 444444432357899999999999999999999987654
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00016 Score=63.65 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=52.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..++.||||+++..++.++|..-|..++.+..+ +.+-.....++|+|.+.++|..|+. |+++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC
Confidence 358899999999999999999999987755554 3332222289999999999999999 9887655
No 317
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.00015 Score=65.85 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=54.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.++.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+ .|+++...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 68999999999999999999999987766555442 2 345679999999999999999 99887654
No 318
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.29 E-value=0.00014 Score=68.13 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=55.8
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..++.||||+++..+++|+|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|++....
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368999999999999999999999988766666542 2 234678999999999999999999987655
No 319
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.00026 Score=59.46 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=50.3
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+.||||++|..++.++|...|..+|....+.+. + ...++.++++|.+.++|..|+..++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 469999999999999999999988877666552 2 3456799999999999999999887
No 320
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.27 E-value=0.00022 Score=62.49 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=51.2
Q ss_pred ceEEEccCCCcchhHHHHHhhhccc--ccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag--~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..||||+++..+++|+|...|..+| ....+.+. + ...++.++++|.+.++|..|++.|+++...
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~ 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3699999999999999999999888 66666542 2 345678999999999999999999997654
No 321
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.25 E-value=0.00025 Score=63.76 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=55.5
Q ss_pred cccceEEEccCCC------cchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPN------QWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss------~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.++.|||||+|. .+++++|...|..+|.+..+.+. + ...++.++++|.+.++|.+|++.|+++...
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4688999999999 99999999999987765555442 2 446789999999999999999999987654
No 322
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.24 E-value=0.00013 Score=70.91 Aligned_cols=106 Identities=14% Similarity=0.051 Sum_probs=50.9
Q ss_pred CceEEEEecCHHHHHHHHHhhcCCceeEEEEeeccCCCCccccc--ccccccceEEEccCCCcchhHHHHHhhhcccccC
Q 001325 606 KGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVING--VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKG 683 (1100)
Q Consensus 606 rgfAFVeF~~i~DAv~A~~~LqG~~~~RI~F~r~~~gsrg~~~G--va~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kg 683 (1100)
.+|||-+|+-..-++.|+..+.... ...+.|..+.-.+ ......+.||||++|..+++|+|..-|..++ ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~------gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~ 73 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMT------GGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PV 73 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CS
T ss_pred CCcccccccCccccchhcccchhcc------CCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce
Confidence 3788999999988888888776532 1111111111111 1223678999999999999999999999877 33
Q ss_pred Ccee-ec--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 684 PYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 684 Pv~f-~D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.+ .+ ...++.++|||++.+||..|+ .++++..+
T Consensus 74 ~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 74 RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 4433 22 345678999999999999998 66665544
No 323
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.24 E-value=0.00023 Score=59.83 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=48.9
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.||||++|..+++|+|...|..+|....+.+. ....++.++++|.+.++|.+|++ ++++..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~ 65 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI 65 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE
Confidence 48999999999999999999987766555442 23456799999999999999987 666553
No 324
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.23 E-value=0.00019 Score=64.84 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=53.9
Q ss_pred cccceEEEccCCCcc------hhHHHHHhhhcccccCCceee--cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQW------AKDEILHESYKVVYKGPYMVT--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~------~kEELfsE~dkag~kgPv~f~--Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.++.|||||+|..+ ++++|...|..+|.+..+.+. ....++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 357899999999988 678899888877755555443 2345789999999999999999999987644
No 325
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.22 E-value=0.00032 Score=63.56 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=55.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+.+.||||+++..++.|+|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 368999999999999999999999987765555442 2 234578999999999999999999998754
No 326
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00018 Score=64.33 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=54.3
Q ss_pred cccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 651 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 651 a~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.+.||||+++..+++++|...|..++.+..+.+. + ...++.++|+|.+.++|..|+.. +++...
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 34579999999999999999999999987765555442 2 23346899999999999999998 776554
No 327
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.22 E-value=0.00029 Score=65.35 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=55.7
Q ss_pred ccccccccceEEEccCCCcchhHHHHHhhhcccc---cCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 648 NGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVY---KGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 648 ~Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~---kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+-.....+.||||+++..+++|+|...|..++. +..+.+. + ...++.++|||.+.++|..|++ ++++..+
T Consensus 10 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 10 LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp SSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred cCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 3333456889999999999999999999998877 3444332 2 3456789999999999999999 8876654
No 328
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.20 E-value=0.0002 Score=64.10 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=51.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c----CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D----lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.||||+++..+++++|...|..+| +..+.+. + ...++.++|+|.+.++|..|+ .|+++..+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 3689999999999999999999999877 5555442 2 334679999999999999999 88887654
No 329
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.20 E-value=0.00023 Score=68.17 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=55.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+|+..++.++|...|..++.+..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 368999999999999999999999987766666542 2 224568999999999999999999986654
No 330
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00018 Score=63.84 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=51.6
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|...|..+ ..+.+. + ...++.++|+|.+.++|..|++.|+++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 478999999999999999999888854 333332 2 233578999999999999999999997655
No 331
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.00025 Score=63.12 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=50.0
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHH
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
..+.+.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 3478999999999999999999999987765555442 2 33456899999999999999986
No 332
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.00033 Score=64.14 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=53.3
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
....+.||||++|..++.|+|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|+. ++++.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~ 75 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQK 75 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCE
Confidence 3468999999999999999999999987766555442 2 4567899999999999999998 66544
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.15 E-value=0.00029 Score=66.57 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=56.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc------ee---ecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY------MV---TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv------~f---~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|...|..+|.+..+ .+ .....++.++|+|.+.++|..|+..|+++...
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 478999999999999999999999988765543 11 24567889999999999999999999987654
No 334
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=97.13 E-value=6.7e-05 Score=80.99 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q 001325 347 SRYKKLCN 354 (1100)
Q Consensus 347 ~~ykklc~ 354 (1100)
-||-.+|.
T Consensus 132 dRy~aI~~ 139 (448)
T 2z73_A 132 DRYNVIGR 139 (448)
T ss_dssp HHHHHTTS
T ss_pred HHHHhccc
Confidence 34444443
No 335
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.12 E-value=0.0002 Score=65.80 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=54.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee----cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~----Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.||||+++..+++|+|..-|..+|.+..+.+. ....++.++|+|.+.++|..|+ .|+++..+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 103 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR 103 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 58999999999999999999999987766655442 2445779999999999999999 78887654
No 336
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.10 E-value=0.00036 Score=66.63 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=50.3
Q ss_pred cccceEEEccCCCcchhHHHHH----hhhcccccCCcee-ecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILH----ESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfs----E~dkag~kgPv~f-~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..++.++|.. -|..+|.+..+.+ .....++.++|+|.+.++|..|+..|+++...
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 4789999999999998887643 3444443333332 23567899999999999999999999997643
No 337
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.09 E-value=0.0003 Score=64.29 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=50.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhh
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
+.+.||||+++..+++++|..-|..+|.+..+.+. + ...++.++|+|.+.++|..|+..++
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 68999999999999999999999987766655442 2 4457899999999999999998764
No 338
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.07 E-value=0.00049 Score=64.48 Aligned_cols=63 Identities=17% Similarity=0.127 Sum_probs=54.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--cee-ec---CCCCcccccccCCHHHHHHHHHHhhhh
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQH 716 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgP--v~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~ 716 (1100)
.+++.||||+++..+++|+|...|..+|.+.. +.+ .| ...++..+|+|.+. ||..|+..|+++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 46899999999999999999999998887755 443 22 45678999999999 999999999997
No 339
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.07 E-value=0.00049 Score=61.42 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=52.2
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..+++++|..-|..++ +..+.+. + ...++.++|+|.+.++|..|+ .|+++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 34789999999999999999999999874 3333332 2 233568999999999999999 88886654
No 340
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.06 E-value=0.00067 Score=61.50 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=54.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccc---cCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVY---KGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~---kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
....+.||||+++..+++|+|..-|..++. +..+.+. + ...++.++|+|.+.++|..|+. ++++..+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 457889999999999999999999998776 3444432 2 4456789999999999999999 8776654
No 341
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.05 E-value=0.00033 Score=68.63 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=54.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccc--ccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag--~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.||||+++..+++|+|...|..+| .+..+.+. | ...++..+|+|.+.++|..|+..|+++..+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 578999999999999999999999887 55555542 3 445678999999999999999999987654
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.03 E-value=0.00066 Score=67.66 Aligned_cols=68 Identities=16% Similarity=0.068 Sum_probs=56.5
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.||||+++..++.++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|++.++++...
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 3468999999999999999999999988766665542 2 345688999999999999999999987643
No 343
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.03 E-value=0.00032 Score=60.50 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=49.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHH
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
.+.+.||||+++..++.++|..-|..+|.+..+.+. + ...++.++++|.+.++|.+|++.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 468999999999999999999999987766555442 2 33467899999999999999976
No 344
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00085 Score=61.44 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=53.1
Q ss_pred cccceEEEccCCCcchhHHHHHhhhccccc-CCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~k-gPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
.+.+.||||+++..+++++|..-|..++.+ ..+.+. + ...++.++|||.+.++|..|++. +++..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 468999999999999999999999988766 555442 2 44678999999999999999876 66543
No 345
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.01 E-value=0.00035 Score=77.39 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=55.1
Q ss_pred ccccceEEEcc--CCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 652 VGSCFHVYVGN--IPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 652 ~~~Sr~LwVG~--Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..++++||||| ++..+++|+|...|.++|.+..+.+ ...++..+|||.+.+||.+|++.|+++..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~--~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC--CTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34899999998 5778999999999998776654433 34789999999999999999999999875
No 346
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=97.00 E-value=0.00055 Score=63.17 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=53.3
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.|.-|||||++.++++++|..=|..+|.+..+. ....++..++||.+.+||..|++.|++...+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~--l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~ 69 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFH--PYLNQGIALCKYTTREEANKAQMALNNCVLA 69 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEE--EETTTTEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEE--EcCCCcEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 588999999999999999888888655444443 3447999999999999999999999997755
No 347
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.00058 Score=59.53 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=52.5
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.||||+++..++.++|..-|..+ .+..+.+ .+ ...++.++|+|.+.++|..|+. ++++..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~ 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC
Confidence 468999999999999999999999887 4444443 23 2336689999999999999999 9887654
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.00062 Score=59.10 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=45.9
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHH
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTA 709 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~A 709 (1100)
.+++.||||+++..+++|+|..-|..++.+..+.+. ...++.++|||.+.++|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-KPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-SSCCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-cCCCCEEEEEECCHHHHHHH
Confidence 368999999999999999999999987765555442 23588999999999999754
No 349
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.97 E-value=0.00054 Score=62.38 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=52.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..+.||||+++..+++++|..-|..++.+..+.+. + ...++.++|+|.+.++|..|+.. +++..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 57999999999999999999999988766666542 2 34567999999999999999987 65443
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.97 E-value=0.0005 Score=72.79 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=54.9
Q ss_pred cccceEEEccCCCcc---------hhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 653 GSCFHVYVGNIPNQW---------AKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~---------~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..++.||||+++..+ ++|+|...|..+|.+..+.+ +..++.++|+|.+.++|..|+..|+++..
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v--~~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY--VESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE--EGGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE--ECCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 479999999999988 78999988887766655544 45789999999999999999999999886
No 351
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.96 E-value=0.0003 Score=61.02 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=52.5
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.||||+++..++.++|..-|..+|.+..+.+. + ...++.++|+|.+.+ |..|+..|+++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~ 68 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM 68 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC
Confidence 579999999999999999999887766666542 2 345778999999999 99999999987654
No 352
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.93 E-value=0.00059 Score=68.75 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=54.0
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
....||||+++..+++|+|...|.++|.+..+.+..-..++.++|||++.++|..|++.|+++..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 35668999999999999999999988776666553333456899999999999999999999875
No 353
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=0.00051 Score=63.68 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=54.0
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCc-eeec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv-~f~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.||||+++..+++++|..-|..++.+..+ .+.+ ...++.++|||.+.++|..|+. |+++..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 357899999999999999999999988876653 3322 3446789999999999999999 8886654
No 354
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.00092 Score=60.30 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=52.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC-cee-e--cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMV-T--DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgP-v~f-~--Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
...+.||||++|..++.++|..-|..++.+.. +.+ . ....++.++|||.+.++|..|+.. +++..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 46899999999999999999999998775543 333 2 244568899999999999999987 655443
No 355
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.87 E-value=0.00077 Score=59.68 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=51.6
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+++.||||+. .+++++|..-|..++.+..+.+ ...++.++|+|++.++|..|+..|+++...
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i--~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE--ETTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe--cCCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 6899999995 7899999999987765555444 367889999999999999999999987654
No 356
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.90 E-value=0.00017 Score=65.90 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=54.7
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCC--------cee-ec---CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--------YMV-TD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgP--------v~f-~D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+++..+++++|..-|..++.+.. +.+ .+ ...++.++|+|.+.++|..|++.|+++...
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 36899999999999999999999998876654 333 22 344678999999999999999999987655
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.83 E-value=0.00022 Score=63.43 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=53.2
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHH---Hhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMA---HLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~---~l~~~r~~ 719 (1100)
..++.||||+++..++.++|..-|..+|.+..+.+. + ...++.++++|.+.++|..|+. .|++++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTTCCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHhCCCeECCEEEE
Confidence 368999999999999999999999987765555432 2 3346889999999999999999 66665543
No 358
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.80 E-value=0.00086 Score=65.14 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=51.3
Q ss_pred ccccccccceEE--EccCCCcchhHHHHHhhhcccccCCceeecCCCCcc-cccccCCHHHHHHHHHHhhhhcc
Q 001325 648 NGVAVGSCFHVY--VGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 648 ~Gva~~~Sr~Lw--VG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~a-LLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
+|+...+++.|+ ||+++-.++.|+|..-|..+|.+..+.+.. ..++. +++||.+.+||..|++.|+++..
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~-~~~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc-CCCCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 445555666555 999999999999998888877666654432 23445 99999999999999999999764
No 359
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.77 E-value=0.00087 Score=56.10 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred eEEEccCCCcchhHHHHHhhhcccccCCceee-c---CCCCcccccccCCHHHHHHHHHH
Q 001325 657 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAH 712 (1100)
Q Consensus 657 ~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~ 712 (1100)
.||||++|..++.++|..-|..+|....+.+. + ...++.++++|.+.++|..|++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 48999999999999999999987766555442 2 44578999999999999999874
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.74 E-value=0.0013 Score=63.13 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=50.6
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCc-ccccccCCHHHHHHHHHHhhhhcc
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEG-ALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~-aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..||||+++-.+++|+|...|..+|.+..+.+.. ..+ .++|||++.++|..|+..|+++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--~~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--RNGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--SSSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4467999999999999999999887666665433 236 499999999999999999999875
No 361
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.73 E-value=0.0011 Score=58.70 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=45.1
Q ss_pred cccccccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHH
Q 001325 649 GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 708 (1100)
Q Consensus 649 Gva~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~ 708 (1100)
+.+..+...||||++|..++.|+|...|..+|.+..+.+. ...++.++++|++.++|.+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~-~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-KPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC-SSCCSEEEEEESCHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe-eCCCCEEEEEECCHHHHHH
Confidence 3445678999999999999999999999987766555442 2368999999999999984
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.67 E-value=0.0023 Score=60.00 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=53.4
Q ss_pred cccceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.||||+. .++.|+|..-|..+|.+..+.+ ...++.++|+|++.++|..|+..|+++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 36899999995 5899999999998877766655 367899999999999999999999987654
No 363
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.58 E-value=0.0017 Score=59.03 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=51.1
Q ss_pred ccccceEEEccCCCcchhHHHHHhhhcccccCCcee-ec--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f-~D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
....+.||||++|..+++|+|..-|..++.. .+.+ .+ ...++.++|||.+.+||..|++ ++++..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 3468899999999999999999999887733 3333 22 3345689999999999999994 6665544
No 364
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.49 E-value=0.00095 Score=69.04 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=52.8
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccc--ccCCceee-c---CCCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVV--YKGPYMVT-D---LSCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag--~kgPv~f~-D---lsee~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..+.||||+++..+++++|...|..++ .+..+.+. + ...++..+|+|.+.++|..|++.|+++..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 467899999999999999999999887 56655542 3 34567899999999999999999987753
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.46 E-value=0.0056 Score=56.00 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred cccceEEEccCCCcch-----------hHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 653 GSCFHVYVGNIPNQWA-----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 653 ~~Sr~LwVG~Iss~~~-----------kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.+++.|+|.++-.... +|+|..+|.++|.+..+.+.+-..++.++|+|.+.++|..|+..|+++...
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4799999999954432 578999999888777776556667899999999999999999999987654
No 366
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.43 E-value=0.0052 Score=58.30 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=59.1
Q ss_pred cceEEeccCCCccc-----HHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCcee----EEEEeec
Q 001325 570 SKQLWLGSFGPEAS-----EAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 639 (1100)
Q Consensus 570 Sr~LWVGnLg~~vt-----e~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~----RI~F~r~ 639 (1100)
.++|.|-||..+|- ++.+|++|..|+++-+|-.+++=.=..|.|.+.++|++|+..|+|.... |+.|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 46788999977763 3678999999999999988875556799999999999999999998654 8888864
No 367
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.42 E-value=0.0018 Score=62.07 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=47.5
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccC--Cceee---cCCCCcccccccCCHHHHHHHHHHhh
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKG--PYMVT---DLSCEGALLMEFRTPEEATTAMAHLR 714 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kg--Pv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~ 714 (1100)
..+.||||++|..+++|+|..-|..++ +. .+.+. +...++.++|||.+.+||..|++..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC
Confidence 578899999999999999999988763 22 33321 24567899999999999999998533
No 368
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.22 E-value=0.0037 Score=58.53 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=46.4
Q ss_pred ccce-EEEccCCCcchhHHHHHhhhc-ccccC-CceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFH-VYVGNIPNQWAKDEILHESYK-VVYKG-PYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~-LwVG~Iss~~~kEELfsE~dk-ag~kg-Pv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+|.. |||+|++-.+..|+|...+.. |...| .+ +++.. +.++|+|.+.++|.+|++.|+++-..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~V--l~Vtg-G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKV--LSITG-CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCE--EECCT-TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCee--EEEec-CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 6777 999999999998875544432 11231 22 23322 99999999999999999999997644
No 369
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0052 Score=58.45 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=50.9
Q ss_pred ccceEEEccCCCcchhHHHHHhhhccccc----CCcee-ec--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYK----GPYMV-TD--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~k----gPv~f-~D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.||||++|-.+++|+|...|..++.+ ..+.+ .+ ...++.++|||.+.+||..|++. +++..+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~ 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC
Confidence 56899999999999999999999987654 34433 22 34567899999999999999975 555444
No 370
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.16 E-value=0.0045 Score=57.57 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=51.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee---cCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~---Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+.||||++|..++.|+|..-|..+ ....+.+. +...++.++|||.+.+||..|+ .++++..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 47899999999999999999999886 44444432 2446789999999999999999 57776554
No 371
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.97 E-value=0.008 Score=55.44 Aligned_cols=68 Identities=18% Similarity=0.046 Sum_probs=54.7
Q ss_pred ccccceEEEccCCCc-----chhHHHHHhhhcccccCCceee-c----CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 652 VGSCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMVT-D----LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~-----~~kEELfsE~dkag~kgPv~f~-D----lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
..+++.|+|.++-.. -.+|+|..||.++|.+..+.+. + ...++.++|+|.+.++|..|+..|+++..+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 348999999999742 3678999999988877766553 2 245789999999999999999999997654
No 372
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.85 E-value=0.004 Score=62.71 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=52.2
Q ss_pred ccceEEEccCCCcchhHHHHHhhhcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 654 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
..+.||||++|..++.|+|..-|..+|.+..+.+. + ...++.++|||++.++|..|++.+++.-
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~ 174 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 174 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeE
Confidence 57899999999999999999999987766555442 2 4457899999999999999998765533
No 373
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.59 E-value=0.032 Score=51.55 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=53.9
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEeccC--------ceEEEEecCHHHHHHHHHhhcCCc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK--------GFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~r--------gfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
.+|-|-+|+|+.||+++.++++.++.++-+.+.+++ +-|||.|.+.+|+.+=.+.++|+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 478899999999999999999999998888775433 689999999999999999999985
No 374
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.12 Score=49.88 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=57.2
Q ss_pred cceEEeccCCCcccHHHHHHHhhcc-----CCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRF-----GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~f-----GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
.+.|=+=+|+.-++++.|+.+.+.| |+|..+...++-+=|+|+|+|..+|-.|.=+|+|..+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeee
Confidence 3566677999999999999999999 9999999999999999999999999999999999653
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.16 E-value=0.073 Score=50.13 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=51.6
Q ss_pred ccccccceEEEccCCCc----------chhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 650 VAVGSCFHVYVGNIPNQ----------WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 650 va~~~Sr~LwVG~Iss~----------~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+.-.+++.|.+-++=.. -.+|+|..|+.++|.+..+.+..-..++.++|+|.+.++|..|++.|+|+..+
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 33456777777776542 24567888888877666665432235789999999999999999999997754
No 376
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.58 E-value=0.028 Score=64.73 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=43.2
Q ss_pred ccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCc-eEEEEecCHHHHHHHH
Q 001325 567 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKG-FALVEYINIIDAIRAR 623 (1100)
Q Consensus 567 ~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rg-fAFVeF~~i~DAv~A~ 623 (1100)
.++.|.++|- .++.+++.+|..-|.+||+|.++.++..+| ||.|||.+.+.|..+.
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence 3568999996 799999999999999999999999998555 9999999977666543
No 377
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=93.56 E-value=0.076 Score=48.81 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=51.7
Q ss_pred ccccceEEEccCCCc--c--------hhHHHHHhhhcccccCCceee-cC-----CCCcccccccCCHHHHHHHHHHhhh
Q 001325 652 VGSCFHVYVGNIPNQ--W--------AKDEILHESYKVVYKGPYMVT-DL-----SCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~--~--------~kEELfsE~dkag~kgPv~f~-Dl-----see~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
..+|+.|.+-|+-.. . ..|+|..|+.++|.+..+.+. +- ..++.++|+|.+.++|..|++.|++
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 347999999987442 2 347899999987766666542 22 3468899999999999999999999
Q ss_pred hccc
Q 001325 716 HRKS 719 (1100)
Q Consensus 716 ~r~~ 719 (1100)
+..+
T Consensus 82 ~~f~ 85 (105)
T 3v4m_A 82 RKFA 85 (105)
T ss_dssp CEET
T ss_pred CEeC
Confidence 7754
No 378
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=92.40 E-value=0.094 Score=49.55 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=50.9
Q ss_pred ccceEEEccCCCc-----chhHHHHHhhhcccccCCcee-ecCC-------CCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 654 SCFHVYVGNIPNQ-----WAKDEILHESYKVVYKGPYMV-TDLS-------CEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 654 ~Sr~LwVG~Iss~-----~~kEELfsE~dkag~kgPv~f-~Dls-------ee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+|+.|++.|+-.. -.+|+|..|+.++|.+..+.+ .+-. ..+.++|+|.+.++|..|+..|+++.-+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 7999999998543 246889999998876666644 2321 2367999999999999999999997643
No 379
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.88 E-value=0.4 Score=55.81 Aligned_cols=142 Identities=19% Similarity=0.280 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHhccCCchHHHHHHhhccccccccCchhHhhhhhheeeecccccee
Q 001325 54 EIRSVYECYRRLKACIAQKDARRLPELEQAYLSLITASRGCTSVQRIVADLVPRYALYCPTALEAATEVVIYMHNSSVAL 133 (1100)
Q Consensus 54 e~r~v~~~y~r~k~~~~~~~~~~~~~leq~y~~li~~srgc~svqri~adliprya~~cptaleaa~kv~inm~~~s~a~ 133 (1100)
-|..+|++|.||-..= | -..+=|.+|..+|.++.|=..++|+.|.+||||..+=|.--|.|.-..+|.-
T Consensus 6 ~ie~LY~~~~~L~da~---d--k~~~~~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLc------ 74 (507)
T 3u0r_A 6 TVEELYRNYGILADAT---E--QVGQHKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLC------ 74 (507)
T ss_dssp CHHHHHHHHHHHHHTG---G--GGGGGHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHH------
T ss_pred hHHHHHHHhhHhhhcc---c--cccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH------
Confidence 3789999999996541 1 2244578899999999999999999999999999999999999987777643
Q ss_pred cccCCCCcchhhhhhhhhhccccccccccccCCCCccccccchhhhhhhhhhhhhhccCCCceEeechhhhhccCCchHH
Q 001325 134 INRGEDADGVAFQTASACIFGLGDICRTASSEVPTSSVIRGICSAVFHNVLDFFISSFDGKDIIHTVDKEITKMLDSDEV 213 (1100)
Q Consensus 134 ~~rged~dgva~~ta~aci~gl~dic~~ass~a~~s~v~~gicsav~~~vltffi~~f~gkdi~~~~~~~~~~~qd~~e~ 213 (1100)
-+||.+ .-+.-|-||.+||.. +. ...+
T Consensus 75 --EDed~~-----IR~qaik~Lp~~ck~---~~-------------------------------------------i~ki 101 (507)
T 3u0r_A 75 --EDEDVS-----IRRQAIKELPQFATG---EN-------------------------------------------LPRV 101 (507)
T ss_dssp --TCSSHH-----HHHHHHHHGGGGCCT---TC-------------------------------------------HHHH
T ss_pred --hcccHH-----HHHHHHHhhHHHhhh---hh-------------------------------------------hhhH
Confidence 334433 345568889999954 11 1234
Q ss_pred HHhhhcccCCCchhhhhhhHHHHHhHHHHHHhcCchHHHHHHHHhhCccc
Q 001325 214 FLGLKKKFSDEDESSLIKLSKFRLLSLLQIFFSSPKNLLAACFELFNPSV 263 (1100)
Q Consensus 214 ~~~lk~~~~~~~~~~~~~l~~~~~l~ll~if~~~p~~~l~acf~l~~s~~ 263 (1100)
-++|-|-+.-|+..-+.-. --||+.+|-..||+.|.+=|..+.+.+
T Consensus 102 aDvL~QlLqtdd~~E~~~V----~~sL~sllk~Dpk~tl~~lf~~i~~~~ 147 (507)
T 3u0r_A 102 ADILTQLLQTDDSAEFNLV----NNALLSIFKMDAKGTLGGLFSQILQGE 147 (507)
T ss_dssp HHHHHHHTTCCCHHHHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccchHHHHHH----HHHHHHHHhcChHHHHHHHHHHHcccc
Confidence 4555555554444333322 247888888999999999998888764
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.68 E-value=0.23 Score=47.89 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=48.4
Q ss_pred ccccceEEEccCCCc-chhHHHHHhhhcccccCCceeec-CCCCcccccccCC-HHHHHHHHHHhh
Q 001325 652 VGSCFHVYVGNIPNQ-WAKDEILHESYKVVYKGPYMVTD-LSCEGALLMEFRT-PEEATTAMAHLR 714 (1100)
Q Consensus 652 ~~~Sr~LwVG~Iss~-~~kEELfsE~dkag~kgPv~f~D-lsee~aLLmEF~s-~eEA~~Ak~~l~ 714 (1100)
-...+.||||+++.. +++|+|...|.. .|++.+++ ..+....+|+|.+ .++|..|...++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~---~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN---HGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS---SCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh---cCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhh
Confidence 446899999999999 999999888885 55666654 4455579999999 899999988874
No 381
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=90.62 E-value=0.6 Score=45.26 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=50.9
Q ss_pred eccCCccccccccccceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCce
Q 001325 556 YFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 631 (1100)
Q Consensus 556 ~~~g~p~a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~ 631 (1100)
|-.|++...+---..+-|-|=..++.. .+.|..+|++||.|.........++-.|.|.+..+|.+|+.. +|+.+
T Consensus 10 ~~~~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 10 YTQGDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp -----------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred eeCCcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 445666555554445555555666664 678889999999999999866899999999999999999987 77554
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.01 E-value=1 Score=42.87 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=53.1
Q ss_pred ccceEEeccCCCcccHHHHHHHhhcc-----CCcceEEEeccCceEEEEecCHHHHHHHHHh----hcCCcee
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRF-----GPLEHFFFFPIKGFALVEYINIIDAIRAREY----IRNHFSW 632 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~f-----GpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~----LqG~~~~ 632 (1100)
.-+.+-|-||++++.++.|+--|+.= |++++|...+ +-|+|.|.+..+|..-++- |+|..+-
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 46789999999999999999999982 8999999887 9999999999999877655 7775543
No 383
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.92 E-value=0.42 Score=44.93 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=50.5
Q ss_pred cceEEeccCCCcccHHHHHHHhhccCCcceEEEec--------cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 570 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--------IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 570 Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~--------~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
|-+|-|-.|+|+.||+++.++++..=+++-+.+.+ --+-|||.|.+.+|..+-.+..+|..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 56899999999999999999988776655444432 23568999999999999999999975
No 384
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=88.54 E-value=0.25 Score=45.23 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred EccCCCcchhHHH-----------HHhh-hcccccCCceee-c--CCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 660 VGNIPNQWAKDEI-----------LHES-YKVVYKGPYMVT-D--LSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 660 VG~Iss~~~kEEL-----------fsE~-dkag~kgPv~f~-D--lsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
+++.+..++.++| ..|+ .++|.+..+.+. + ...++.++|+|.+.++|..|+..|+++...
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4555555555544 4555 766655555442 2 235789999999999999999999997643
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=88.25 E-value=1.3 Score=42.04 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=48.9
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEeccCceEEEEecCHHHHHHHHHhhcCCceeEE
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRV 634 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI 634 (1100)
.-|+| ..++.--..||+.+|..||-+.==|+ +-.-|||-|.+.+.|..|+..|.=...++|
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~k~~~y~i 77 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSKYAESYRI 77 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHHHCCSSEE
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcccCCceEE
Confidence 34556 99999999999999999996665555 457899999999999999998863343444
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=87.11 E-value=0.52 Score=44.69 Aligned_cols=56 Identities=14% Similarity=0.009 Sum_probs=46.2
Q ss_pred ceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCc
Q 001325 571 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHF 630 (1100)
Q Consensus 571 r~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~ 630 (1100)
.-|+| +.++.---.||+.+|..|| .|.+.= +-.-|||-|.+.+.|..|+..|.=..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHTTCS
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCC
Confidence 34566 9999999999999999999 555432 66889999999999999999885333
No 387
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.35 E-value=0.5 Score=43.51 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=39.8
Q ss_pred CcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhh
Q 001325 665 NQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 665 s~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
..+++++|..-|..+|.+..+.+. ...++.++|||++.++|..|++.+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 347888998888877766655554 36788999999999999999998655
No 388
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.56 E-value=2.2 Score=49.46 Aligned_cols=62 Identities=16% Similarity=0.059 Sum_probs=50.6
Q ss_pred ccceEEeccCCCcccHHHHHHHhhccCCcceEEEec-cCceEEEEecCHHHHHHHHHhhcCCceeEE
Q 001325 569 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSWRV 634 (1100)
Q Consensus 569 ~Sr~LWVGnLg~~vte~dL~~~F~~fGpLe~V~~~~-~rgfAFVeF~~i~DAv~A~~~LqG~~~~RI 634 (1100)
-..-|+|| ++......||++.|+.||. |.+.. +...|||.|.+.++|..+++.+.-...++|
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEECSSSEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEEcCCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 35567787 8888899999999999994 44444 778899999999999999999976654444
No 389
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=80.69 E-value=0.32 Score=63.73 Aligned_cols=17 Identities=6% Similarity=0.387 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001325 55 IRSVYECYRRLKACIAQ 71 (1100)
Q Consensus 55 ~r~v~~~y~r~k~~~~~ 71 (1100)
+++|-.+=.+||+++..
T Consensus 272 l~~II~~N~~Lk~~~~~ 288 (1752)
T 3h0g_A 272 LSDIIKANANVRRCEQE 288 (1752)
T ss_dssp HHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444555555443
No 390
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=79.25 E-value=0.93 Score=44.96 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=47.1
Q ss_pred ceEEEccC----CCcchhHHHHHhhhcccccCCcee-ec---CCCCcccccccCC----HHH----HHHHHH--Hhhhhc
Q 001325 656 FHVYVGNI----PNQWAKDEILHESYKVVYKGPYMV-TD---LSCEGALLMEFRT----PEE----ATTAMA--HLRQHR 717 (1100)
Q Consensus 656 r~LwVG~I----ss~~~kEELfsE~dkag~kgPv~f-~D---lsee~aLLmEF~s----~eE----A~~Ak~--~l~~~r 717 (1100)
+.||||++ +..++.++|-.=|..+|.+..+.+ .| ....+..++||.+ +++ |..|.. .+++++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999998887777755 34 4568899999996 544 455544 455555
Q ss_pred cc
Q 001325 718 KS 719 (1100)
Q Consensus 718 ~~ 719 (1100)
.+
T Consensus 83 I~ 84 (136)
T 2j8a_A 83 IM 84 (136)
T ss_dssp ET
T ss_pred ec
Confidence 44
No 391
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.34 E-value=0.43 Score=62.66 Aligned_cols=11 Identities=55% Similarity=0.667 Sum_probs=5.8
Q ss_pred ecccCCCCcch
Q 001325 133 LINRGEDADGV 143 (1100)
Q Consensus 133 ~~~rged~dgv 143 (1100)
+|..||-..|+
T Consensus 612 ~i~~gell~g~ 622 (1752)
T 3h0g_A 612 LIENGEIIYGV 622 (1752)
T ss_dssp EECBSCEEEEC
T ss_pred EEEcCeEEecc
Confidence 45555555554
No 392
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=74.98 E-value=1.5 Score=44.06 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=41.1
Q ss_pred chhHHHHHhhhcccccCCceee-cC-------CCCcccccccCCHHHHHHHHHHhhhhcc
Q 001325 667 WAKDEILHESYKVVYKGPYMVT-DL-------SCEGALLMEFRTPEEATTAMAHLRQHRK 718 (1100)
Q Consensus 667 ~~kEELfsE~dkag~kgPv~f~-Dl-------see~aLLmEF~s~eEA~~Ak~~l~~~r~ 718 (1100)
..+++|..|+.++|....+.+. +. ...+..++||.+.++|.+|+..|+|+--
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 4678899999988866666553 21 3457899999999999999999999764
No 393
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.24 E-value=42 Score=32.74 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=50.9
Q ss_pred cceEEEccCCCcchhHHHHHhhhc--ccccCCc-eeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 655 CFHVYVGNIPNQWAKDEILHESYK--VVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 655 Sr~LwVG~Iss~~~kEELfsE~dk--ag~kgPv-~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
-|.|=+=+||..+.+..|-.-+.. ....+++ .+.-.++-+.+++||.+...|..|.-.|+|.-.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec
Confidence 567778899999999988444433 2345655 5666788899999999999999999999987654
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=37.75 E-value=21 Score=35.28 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=35.6
Q ss_pred CcccHHHHHHHhhccCCcce-EE----------------Eec---cCceEEEEecCHHHHHHHHHh
Q 001325 580 PEASEAHIRFQIDRFGPLEH-FF----------------FFP---IKGFALVEYINIIDAIRAREY 625 (1100)
Q Consensus 580 ~~vte~dL~~~F~~fGpLe~-V~----------------~~~---~rgfAFVeF~~i~DAv~A~~~ 625 (1100)
+......+-..|++||.|-. +- .++ ..++--|.|.+..+|.+|++.
T Consensus 16 p~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~ 81 (132)
T 3p3d_A 16 PETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE 81 (132)
T ss_dssp CGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh
Confidence 44556778889999999965 31 222 578889999999999999864
No 395
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.45 E-value=21 Score=33.59 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=38.5
Q ss_pred ceEEEccCCC-----cchhHHHHHhhh-cccccCCc-eeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 656 FHVYVGNIPN-----QWAKDEILHESY-KVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 656 r~LwVG~Iss-----~~~kEELfsE~d-kag~kgPv-~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
-.+.|--.++ .|-.|+|..++. +|..+|.+ .+....++ ++++|.+.++|.+|+. |+++..+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeC
Confidence 3555655553 366655555432 22344433 22333333 9999999999999998 9998876
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=35.97 E-value=73 Score=30.34 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=42.7
Q ss_pred ceEEEccCCCcchhHHHHHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhh
Q 001325 656 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 715 (1100)
Q Consensus 656 r~LwVG~Iss~~~kEELfsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~ 715 (1100)
..++| ..|+.|...+|+.=|..++ .+.|.=+ ++..+|+=|.+.+.|..||..|+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg---gv~I~Wi-dDTsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG---NIQISWI-DDTSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC---SCCCEEE-ETTEEEEECSCHHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC---CEEEEEE-cCCeEEEEecCHHHHHHHHHhccc
Confidence 34555 9999999999999888764 5544333 257778899999999999998863
No 397
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.09 E-value=17 Score=33.75 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=33.5
Q ss_pred cchhHHHHHhhhc-ccccCCc-eeecCCCCcccccccCCHHHHHHHHHHhhhhccc
Q 001325 666 QWAKDEILHESYK-VVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 719 (1100)
Q Consensus 666 ~~~kEELfsE~dk-ag~kgPv-~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r~~ 719 (1100)
.|-.|+|..++.. |..+|.+ .+....++ ++++|++.+.|.+|+. |+++..+
T Consensus 22 ~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 22 NFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEET
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeC
Confidence 4667555555432 2245544 22333333 8999999999999998 9998766
No 398
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.28 E-value=39 Score=32.17 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=39.9
Q ss_pred cceEEEccCCCcc-hhHHH----HHhhhcccccCCceeecCCCCcccccccCCHHHHHHHHHHhhhhc
Q 001325 655 CFHVYVGNIPNQW-AKDEI----LHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 717 (1100)
Q Consensus 655 Sr~LwVG~Iss~~-~kEEL----fsE~dkag~kgPv~f~Dlsee~aLLmEF~s~eEA~~Ak~~l~~~r 717 (1100)
.+.|.|-+++..+ ..+++ +.=+.+++... .|.-+.+-.-+.+.|.++++|.+|+..|.+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~ 70 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT--TFQYFKSFKRVRINFSNPLSAADARLRLHKTE 70 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--EEEEETTTTEEEEECSSTTHHHHHHHTSTTSE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--ceeecCcceEEEEEeCChHHHHHHHHHhccce
Confidence 4568899997754 33333 33333322222 34445555688999999999999998888764
No 399
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=26.88 E-value=36 Score=40.08 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=53.1
Q ss_pred ccccccccceEEeccCCCcccHHHHHHHhh----ccCCcceEEEe--c-c--CceEEEEecCHHHHHHHHHhhc--CCce
Q 001325 563 AMDIFSASKQLWLGSFGPEASEAHIRFQID----RFGPLEHFFFF--P-I--KGFALVEYINIIDAIRAREYIR--NHFS 631 (1100)
Q Consensus 563 a~dv~~~Sr~LWVGnLg~~vte~dL~~~F~----~fGpLe~V~~~--~-~--rgfAFVeF~~i~DAv~A~~~Lq--G~~~ 631 (1100)
++.|+.+..++..|.+..+.+.-||+.+|- .||=|..+++. + + +.++++.|.+.++|.+|++.+. |-.+
T Consensus 266 ~levVl~dG~i~~~~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p 345 (584)
T 2uuu_A 266 SFRTVTPTGTLELRNGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIRSSEVIP 345 (584)
T ss_dssp EEEEEETTEEECCC-------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHHTCCC
T ss_pred eEEEEeCCCCEEECCccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 667788888887776655566667777764 56678877763 3 2 3577899999999999999876 4455
Q ss_pred eEEEEeec
Q 001325 632 WRVKFMDV 639 (1100)
Q Consensus 632 ~RI~F~r~ 639 (1100)
..+||+|.
T Consensus 346 ~a~El~d~ 353 (584)
T 2uuu_A 346 TMIRVYDP 353 (584)
T ss_dssp SEEEEECH
T ss_pred eEEEEech
Confidence 69999986
No 400
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=26.24 E-value=55 Score=37.52 Aligned_cols=77 Identities=10% Similarity=0.037 Sum_probs=52.7
Q ss_pred ccccccccceEEec--cCCCcccHHHHHHHhh----ccCCcceEEEe--c---cCceEEEEecCHHHHHHHHHhhc---C
Q 001325 563 AMDIFSASKQLWLG--SFGPEASEAHIRFQID----RFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIR---N 628 (1100)
Q Consensus 563 a~dv~~~Sr~LWVG--nLg~~vte~dL~~~F~----~fGpLe~V~~~--~---~rgfAFVeF~~i~DAv~A~~~Lq---G 628 (1100)
++.|+.+..+++-. .+..+.+.-||+.+|- .||=|..+++. + .+..+++.|.++++|.+|+..++ |
T Consensus 177 ~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~g 256 (476)
T 3pm9_A 177 GVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAA 256 (476)
T ss_dssp EEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHHHHHG
T ss_pred EEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHHHhcC
Confidence 55666666555432 2334444456666653 45677877763 3 24578999999999999999985 4
Q ss_pred CceeEEEEeec
Q 001325 629 HFSWRVKFMDV 639 (1100)
Q Consensus 629 ~~~~RI~F~r~ 639 (1100)
-.+..+||+|.
T Consensus 257 ~~p~a~El~d~ 267 (476)
T 3pm9_A 257 GNLTSFELIAE 267 (476)
T ss_dssp GGEEEEEEEEH
T ss_pred CCceEEEecCH
Confidence 46779999986
No 401
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.51 E-value=47 Score=39.49 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=57.7
Q ss_pred cccccccccceEEec-cCCCcccHHHHHHHh----hccCCcceEEEe--c---cCceEEEEecCHHHHHHHHHhhcCC--
Q 001325 562 AAMDIFSASKQLWLG-SFGPEASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIRNH-- 629 (1100)
Q Consensus 562 ~a~dv~~~Sr~LWVG-nLg~~vte~dL~~~F----~~fGpLe~V~~~--~---~rgfAFVeF~~i~DAv~A~~~LqG~-- 629 (1100)
..+.|+.+.-.|+-+ ....+++--||..+| +-+|=|..+++. + .+.+++|.|.+.++|.+|++.+...
T Consensus 334 lgleVVlpdG~i~~~~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~~~~ 413 (658)
T 4bby_A 334 VHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAKQRC 413 (658)
T ss_dssp EEEEEEETTEEEECSCCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred eeEEEEeCCCcccccccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHHcCC
Confidence 367888888888754 344555556888887 367888887763 3 4567899999999999999988544
Q ss_pred ceeEEEEeec
Q 001325 630 FSWRVKFMDV 639 (1100)
Q Consensus 630 ~~~RI~F~r~ 639 (1100)
.+..+||+|.
T Consensus 414 ~psa~El~D~ 423 (658)
T 4bby_A 414 APASIRLMDN 423 (658)
T ss_dssp CCSEEEEECH
T ss_pred CccccccccH
Confidence 3448899974
No 402
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=25.11 E-value=23 Score=34.58 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=17.4
Q ss_pred HHHhcCchHHHHHHHHhhCcc
Q 001325 242 QIFFSSPKNLLAACFELFNPS 262 (1100)
Q Consensus 242 ~if~~~p~~~l~acf~l~~s~ 262 (1100)
+||+-+=||+..--|.||+-.
T Consensus 50 ~~fl~~yknif~eff~lfrrv 70 (151)
T 4ffe_X 50 EIFLPFYKNVFSEFFSLFRRV 70 (151)
T ss_dssp SSHHHHHHHHHHHHHHTCCCC
T ss_pred eeehHHHHHHHHHHHHHHhhC
Confidence 368888899999999999644
No 403
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=22.35 E-value=18 Score=47.88 Aligned_cols=126 Identities=22% Similarity=0.462 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCCC--CCCCC-CCCCCCccCCCccCCCCCCCCCC--CCCCCCcccCCCCCCCCCcCCC--CCCCCCC
Q 001325 880 PVYLPPNSSWDAGGSN--HQLPS-NPISPNVVPNTFHVNAVAAPFIP--PSVTPLAQIQGAPMQNYDQMFS--HPVAPPH 952 (1100)
Q Consensus 880 pv~~~P~~~wD~~~~N--h~lps-s~~sP~vmP~~f~~navs~Pf~P--~svTPLaQ~QgPP~q~~~q~~P--ppppPPp 952 (1100)
|.|.+.+-.|..+.+. ..-|. ++.+|..-|.+-...+.++.+.| +.-+|.++...|..+.+.+..| +|..|--
T Consensus 1561 p~~~~~sp~~~~~sp~~sp~sp~~sptsp~~sp~s~~~~ptsp~ysp~sp~~sptsp~~sptsp~ysP~sp~~sptsp~y 1640 (1733)
T 1twf_A 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640 (1733)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 001325 953 LSSLPPQPAELPPLPPSPPPLPQSQPPLVPPPPNSPPPPPPSPVVEPMQVERS 1005 (1100)
Q Consensus 953 lps~PPppp~ppp~pp~ppp~P~~~pP~~PppP~~Pp~ppp~~~p~~~gs~Ss 1005 (1100)
.|+.|.-.|+.|.-.|..|.-.|+.|+-.|..|.-.|..|...+..|.-+..+
T Consensus 1641 sp~sp~~sp~sp~y~p~sp~~sp~sp~~~p~sp~y~p~sp~y~p~sp~~sp~s 1693 (1733)
T 1twf_A 1641 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1693 (1733)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!