BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001326
(1099 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 625 DCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESL- 683
D + L P+ ++ LE L L R+ ++ LP+SI +L L+EL + C +L LPE L
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 684 -----GNLKSLVVLDANR---SAILQLPSSIADLNKLREL 715
G + LV L + R + I LP+SIA+L L+ L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 39/186 (20%)
Query: 517 IPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLT----EFPHISG--- 569
+P+ I + N L LS+R C L+ P + + + G VNL E+ I
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLA-STDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 570 ------NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXX 623
N+ LK+ N+P+ + +I LP L+ L+L
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL------------------------ 236
Query: 624 XDCSDLESFPEILEKMEPLEKLAL-DRSGIKELPSSIENLEGLKELQLMCCSKLGSLPES 682
C+ L ++P I PL++L L D S + LP I L L++L L C L LP
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 683 LGNLKS 688
+ L +
Sbjct: 297 IAQLPA 302
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 58/145 (40%), Gaps = 12/145 (8%)
Query: 435 LRYLHWHECP-LKSLPSNF----------DLENLIELDLPYSKVEQLWEGEKEAFKLKSI 483
LR L CP L LP L NL L L ++ + L LKS+
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 484 DLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPR 543
+ S P P LE ++L C L P L L L+DC +L P
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 544 NIHFRSPV-KIDFSGCVNLTEFPHI 567
+IH + + K+D GCVNL+ P +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 24/92 (26%)
Query: 629 LESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKS 688
L FP+ ++ L+ +D +G+ ELP + + GL+ L L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLA----------------- 135
Query: 689 LVVLDANRSAILQLPSSIADLNKLRELCLSGC 720
R+ + LP+SIA LN+LREL + C
Sbjct: 136 -------RNPLRALPASIASLNRLRELSIRAC 160
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 34/251 (13%)
Query: 58 VGIWGMAGIGKTTLAGAIF---NLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114
V I+GMAG GK+ LA +L+ F G ++ + ++G L+ L+ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG-LLMKLQNLCMRLDQ 208
Query: 115 EENIKIETPCLPEYIGERLRRM------KVLIVLDDVNKVGQLKYLAGGIDRFGPGSRII 168
EE+ P E +RLR + + L++LDDV LK F +I+
Sbjct: 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK-------AFDNQCQIL 261
Query: 169 ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYAN 228
+TTRDK + D+ + +GL ++ E+ + N +DL A + ++K
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECK 318
Query: 229 GNPLALTVLGSFFHQKSKPD-WEKALEKIN-----RISDPDIYD------VLKISYNDLR 276
G+PL ++++G+ + P+ W L ++ RI YD + IS LR
Sbjct: 319 GSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376
Query: 277 PEEKSIFLDIA 287
+ K + D++
Sbjct: 377 EDIKDYYTDLS 387
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 110/251 (43%), Gaps = 34/251 (13%)
Query: 58 VGIWGMAGIGKTTLAGAIF---NLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114
V I+GMAG GK+ LA +L+ F G ++ + ++G L+ L+ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG-LLMKLQNLCMRLDQ 215
Query: 115 EENIKIETPCLPEYIGERLRRM------KVLIVLDDVNKVGQLKYLAGGIDRFGPGSRII 168
EE+ P E +RLR + + L++LDDV LK F +I+
Sbjct: 216 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLK-------AFDNQCQIL 268
Query: 169 ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYAN 228
+TT DK + D+ + +GL ++ E+ + N +DL A + ++K
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECK 325
Query: 229 GNPLALTVLGSFFHQKSKPD-WEKALEKIN-----RISDPDIYD------VLKISYNDLR 276
G+PL ++++G+ + P+ W L ++ RI YD + IS LR
Sbjct: 326 GSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 383
Query: 277 PEEKSIFLDIA 287
+ K + D++
Sbjct: 384 EDIKDYYTDLS 394
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 573 ELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLES 631
EL L N PIE +PS + +P+L+ L+LG KRL+ +S +L+
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 632 FPEILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLV 690
P L + LE+L L + + + P S + L L++L LM + +LKSL
Sbjct: 171 IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 691 VLDANRSAILQLPSSI 706
L+ + + ++ LP +
Sbjct: 230 ELNLSHNNLMSLPHDL 245
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 60/187 (32%)
Query: 370 NKGTDAIEGMFLNLSKIREIHLN--------SLVFEKMPNLRLLKF-------YMPEYGG 414
N+ T F LSK+RE+ L S F ++P+LR L Y+ E
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 415 VPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVE------ 468
++N LRYL+ C LK +P+ L L EL+L ++++
Sbjct: 153 EGLVN---------------LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGS 197
Query: 469 --------QLW-------EGEKEAF-KLKSI-DLHQSH-NLTRIPKQSEAP--NLERINL 508
+LW E+ AF LKS+ +L+ SH NL +P P LER++L
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Query: 509 ----WNC 511
W+C
Sbjct: 258 NHNPWHC 264
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 573 ELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLES 631
EL L N PIE +PS + +P+L+ L+LG KRL+ +S +L+
Sbjct: 111 ELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 632 FPEILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLV 690
P L + LE+L L + + + P S + L L++L LM + +LKSL
Sbjct: 171 IPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 691 VLDANRSAILQLPSSI 706
L+ + + ++ LP +
Sbjct: 230 ELNLSHNNLMSLPHDL 245
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 60/188 (31%)
Query: 370 NKGTDAIEGMFLNLSKIREIHLN--------SLVFEKMPNLRLLKF-------YMPEYGG 414
N+ T F LSK+RE+ L S F ++P+LR L Y+ E
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 415 VPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVE------ 468
++N LRYL+ C LK +P+ L L EL+L ++++
Sbjct: 153 EGLVN---------------LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGS 197
Query: 469 --------QLW-------EGEKEAF-KLKSI-DLHQSH-NLTRIPKQSEAP--NLERINL 508
+LW E+ AF LKS+ +L+ SH NL +P P LER++L
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Query: 509 ----WNCK 512
W+C
Sbjct: 258 NHNPWHCN 265
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 34/251 (13%)
Query: 58 VGIWGMAGIGKTTLAGAIF---NLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114
V I GMAG GK+ LA +L+ F G +V + ++G L+ L+
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSG-LLMKLQNLCTRLDQ 208
Query: 115 EENIKIETPCLPEYIGERLRRM------KVLIVLDDVNKVGQLKYLAGGIDRFGPGSRII 168
+E+ P E +RLR + + L++LDDV LK F +I+
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-------AFDSQCQIL 261
Query: 169 ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYAN 228
+TTRDK + D+ + + L ++ E+ + N DL + ++K
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKECK 318
Query: 229 GNPLALTVLGSFFHQKSKPD-WEKALEKIN-----RISDPDIYD------VLKISYNDLR 276
G+PL ++++G+ + P+ WE L+++ RI YD + IS LR
Sbjct: 319 GSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376
Query: 277 PEEKSIFLDIA 287
+ K + D++
Sbjct: 377 EDIKDYYTDLS 387
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 34/251 (13%)
Query: 58 VGIWGMAGIGKTTLAGAIF---NLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114
V I GMAG GK+ LA +L+ F G +V + ++G L+ L+
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSG-LLMKLQNLCTRLDQ 214
Query: 115 EENIKIETPCLPEYIGERLRRM------KVLIVLDDVNKVGQLKYLAGGIDRFGPGSRII 168
+E+ P E +RLR + + L++LDDV LK F +I+
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK-------AFDSQCQIL 267
Query: 169 ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYAN 228
+TTRDK + D+ + + L ++ E+ + N DL + ++K
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKECK 324
Query: 229 GNPLALTVLGSFFHQKSKPD-WEKALEKIN-----RISDPDIYD------VLKISYNDLR 276
G+PL ++++G+ + P+ WE L+++ RI YD + IS LR
Sbjct: 325 GSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 382
Query: 277 PEEKSIFLDIA 287
+ K + D++
Sbjct: 383 EDIKDYYTDLS 393
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 573 ELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLES 631
EL L N PIE +PS + +P+L+ L+LG KRL +S G +L
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199
Query: 632 FPEI--LEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSL 689
P + L K++ L+ S I+ P S + L L++L ++ + NL+SL
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 690 VVLDANRSAILQLP 703
V ++ + + LP
Sbjct: 258 VEINLAHNNLTLLP 271
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 46/181 (25%)
Query: 370 NKGTDAIEGMFLNLSKIREIHLN--------SLVFEKMPNLRLLKFYMPEYGGVPIMNSK 421
N+ T G F+ LSK++E+ L S F ++P+LR L + G + ++
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-----DLGELKRLS-- 174
Query: 422 VHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEG-------- 473
++ +G LRYL+ C L+ +P+ L L ELDL + + + G
Sbjct: 175 -YISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 474 -------------EKEAF-KLKS-IDLHQSH-NLTRIPKQSEAP--NLERINL----WNC 511
E+ AF L+S ++++ +H NLT +P P +LERI+L WNC
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
Query: 512 K 512
Sbjct: 294 N 294
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 573 ELKLFNTPIEEVPS-SIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLES 631
EL L N PIE +PS + +P+L L+LG K+L+ +S G +++
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210
Query: 632 FPEILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLV 690
P L + LE+L + + E+ P S L LK+L +M + L SLV
Sbjct: 211 MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 691 VLDANRSAILQLPSSI 706
L+ + + LP +
Sbjct: 270 ELNLAHNNLSSLPHDL 285
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 101/250 (40%), Gaps = 21/250 (8%)
Query: 441 HECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEAF-KLKSIDLHQSHNLTRIPKQ-- 497
E + +PS+ N IEL +K+ + +G F L+ I++ Q+ L I
Sbjct: 17 QESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75
Query: 498 SEAPNLERINLWNCKNLLYI-PSHIQNFNNLSMLSLRDCISLSCFP--RNIHFRSPVKID 554
S P L I + NLLYI P QN NL L + + + P IH V +D
Sbjct: 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLD 134
Query: 555 FSGCVNL-----TEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVS 609
+N+ F +S V L L I+E+ +S + L LNL L+ +
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194
Query: 610 TGIXXXXXXXXXXXXDCSDLESFPEILEKMEPLEKL-ALDRSGIKELPSSIENLEGLKEL 668
+ + + S P +E L+KL A +K+LP ++E L L E
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEA 251
Query: 669 QLM----CCS 674
L CC+
Sbjct: 252 SLTYPSHCCA 261
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 645 LALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKS-LVVLDANRSAILQLP 703
L L+++GI+E+ +S N L EL L + L LP + + S V+LD +R+ I LP
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 704 S-SIADLNKLR 713
S + +L KLR
Sbjct: 219 SYGLENLKKLR 229
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 586 SSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP-EILEKMEPLEK 644
++ L L LNL + +L+ +S G+ + L S P + + + L+K
Sbjct: 53 ATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 645 LALDRSGIKELPSSI-ENLEGLKELQLMCCSKLGSLPE-SLGNLKSLVVLDANRSAILQL 702
L L + +K LPS + + L LKEL+L ++L S+P + L +L L + + + +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 703 PSSIAD-LNKLRELCLSG 719
P D L KL+ + L G
Sbjct: 171 PHGAFDRLGKLQTITLFG 188
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 625 DCSDLESF--PEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPES 682
D S+L+ F + K + L +L L+ + + ELP+ I+NL L+ L L ++L SLP
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL-SHNRLTSLPAE 288
Query: 683 LGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSG 719
LG+ L + + LP +L L+ L + G
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 586 SSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP-EILEKMEPLEK 644
++ L L LNL + +L+ +S G+ + L S P + + + L+K
Sbjct: 53 ATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 645 LALDRSGIKELPSSI-ENLEGLKELQLMCCSKLGSLPE-SLGNLKSLVVLDANRSAILQL 702
L L + +K LPS + + L LKEL+L ++L S+P + L +L L + + + +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 703 PSSIAD-LNKLRELCLSG 719
P D L KL+ + L G
Sbjct: 171 PHGAFDRLGKLQTITLFG 188
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 102/269 (37%), Gaps = 44/269 (16%)
Query: 436 RYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEAF-KLKSIDLHQSHNLTRI 494
R E + +PS+ N IEL +K+ + +G F L+ I++ Q+ L I
Sbjct: 12 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 495 PKQ--SEAPNLERINLWNCKNLLYI-PSHIQNFNNLSMLSLRDCISLSCFP--RNIHFRS 549
S P L I + NLLYI P QN NL L + + + P IH
Sbjct: 71 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQ 129
Query: 550 PVKIDFSGCVNL-----TEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKR 604
V +D +N+ F +S V L L I+E+ + + L LNL
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS---- 185
Query: 605 LKRVSTGIXXXXXXXXXXXXDCSDLESFP-EILEKMEPLEKLALDRSGIKELPSSIENLE 663
D ++LE P ++ L + R+ I LPS LE
Sbjct: 186 --------------------DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLE 223
Query: 664 GLKELQLMCCSKLGSLPESLGNLKSLVVL 692
LK+L+ L LP L+ LV L
Sbjct: 224 NLKKLRARSTYNLKKLP----TLEKLVAL 248
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 645 LALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKS-LVVLDANRSAILQLP 703
L L+++GI+E+ + N L EL L + L LP + + S V+LD +R+ I LP
Sbjct: 159 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218
Query: 704 S-SIADLNKLR 713
S + +L KLR
Sbjct: 219 SYGLENLKKLR 229
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 635 ILEKMEPLEKLALDRSGIKELPSSI-ENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLD 693
+ + + L L L + + LPS++ + L LKEL MCC+KL LP + L L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL-FMCCNKLTELPRGIERLTHLTHLA 141
Query: 694 ANRSAILQLPSSIAD 708
+++ + +P D
Sbjct: 142 LDQNQLKSIPHGAFD 156
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 83 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 180
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 567 ISGNVVELKLFNTPIEEVPSSI-ESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXD 625
I L L ++ +P+ + + L +L L LG +L+ + G+
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 626 CSDLESFPE-ILEKMEPLEKLALDRSGIKELPSSI-ENLEGLKELQLMCCSKLGSLPESL 683
+ L+S P + +K+ L++LAL+ + ++ LP + + L LK+L+L ++L S+P+ +
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY-QNQLKSVPDGV 143
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLL 179
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 791 LQSLPELPLGLRHLEASNCKRLQSFPESPSCIEELHA 827
L +LPELP L+HL+ N +L PE P+ +E ++A
Sbjct: 112 LSTLPELPASLKHLDVDN-NQLTXLPELPALLEYINA 147
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 791 LQSLPELPLGLRHLEASNCKRLQSFPESPSCIEEL 825
L SLPELP L +L+A + RL + PE P+ ++ L
Sbjct: 92 LISLPELPASLEYLDACD-NRLSTLPELPASLKHL 125
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 574 LKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESFP 633
L L + ++ +P ++LP L +L++ F RL + G ++L++ P
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 634 E-ILEKMEPLEKLALDRSGIKELPSSIEN-LEGLKELQL 670
+L LEKL+L + + ELP+ + N LE L L L
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 58 VGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFE 115
V I G +G GK+TL I L+ EG+ F+ V+ N L LR R L +F+
Sbjct: 33 VSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89
>pdb|3F8K|A Chain A, Crystal Structure Of Protein Acetyltransferase (Pat) From
Sulfolobus Solfataricus
Length = 160
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 243 QKSKPDWEKALEKINRISDPDIY------------DVLKISYNDLRPEEKSIFL-DIACF 289
+ +K DWEK + N +SD D+Y D KI+ N E+ FL ++
Sbjct: 9 KATKEDWEKIYQLYNSLSDEDLYLRFFHLYRITEEDAKKIASN----EDHVTFLAEVDGK 64
Query: 290 VVGE---EKDFVTSILEDPNIAHYGLSVLIERSLVTISK 325
VVGE KD S++ N G+ L+ ++L+ +K
Sbjct: 65 VVGEASLHKDGEFSLVVHRNYRTLGIGTLLVKTLIEEAK 103
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 60 IWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE-NGHRLVYL 105
+ G G+GKT+LA +I + +F R + VR ESE GHR Y+
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFV-RISLGGVRDESEIRGHRRTYV 158
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 39/219 (17%)
Query: 517 IPSHIQNF----NNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVV 572
+P+HI NNL+ SL P + ++ SG LT P + ++
Sbjct: 59 LPAHITTLVIPDNNLT--------SLPALPPELR-----TLEVSGN-QLTSLPVLPPGLL 104
Query: 573 ELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGIXXXXXXXXXXXXDCSDLESF 632
EL +F+ P+ +P+ L L I F +L + + + L +
Sbjct: 105 ELSIFSNPLTHLPALPSGLCKLWI----FGNQLTSLPV-LPPGLQELSVSDNQLASLPAL 159
Query: 633 PEILEKM----EPLEKLALDRSGIKELPSSIENLEGLKELQ------LMCCSKLGSLPES 682
P L K+ L L + SG++EL S L L L ++L SLP
Sbjct: 160 PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL 219
Query: 683 LGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCR 721
LK L+V +++ LPS +L+EL +SG R
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPS------ELKELMVSGNR 252
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 418 MNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSN-FDLENLIELDLPYSKVEQLWEGEKE 476
M+S + D CLP ++ L H +KS+P LE L EL++ ++++ + +G +
Sbjct: 406 MSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFD 465
Query: 477 AF-KLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKN 513
L+ I LH + P P ++ ++ W KN
Sbjct: 466 RLTSLQKIWLHTN------PWDCSCPRIDYLSRWLNKN 497
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 278 EEKSIFLDIACFVVGE---EKDFVTSILEDPNIAHYGLSVLIERSLVTISK 325
E K +LDIAC + E V+S+L +P I H L ++ ++ + K
Sbjct: 158 ERKPAYLDIACNIASEPCVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEK 208
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 543 RNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFC 602
+N F + S C L H+S FN +PSS+ SL L+ L L +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSL-HLS--------FNYLSGTIPSSLGSLSKLRDLKL-WL 448
Query: 603 KRLKRVSTGIXXXXXXXXXXXXDCSDLES-FPEILEKMEPLEKLALDRSGIK-ELPSSIE 660
L+ D +DL P L L ++L + + E+P I
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 508
Query: 661 NLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDAN 695
LE L L+L S G++P LG+ +SL+ LD N
Sbjct: 509 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 644 KLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLP 703
+L L+ G+ LP +LE L + C+ L LPE +LKSL+V + N A+ LP
Sbjct: 75 ELELNNLGLSSLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
Query: 543 RNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFC 602
+N F + S C L H+S FN +PSS+ SL L+ L L +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSL-HLS--------FNYLSGTIPSSLGSLSKLRDLKL-WL 451
Query: 603 KRLKRVSTGIXXXXXXXXXXXXDCSDLES-FPEILEKMEPLEKLALDRSGIK-ELPSSIE 660
L+ D +DL P L L ++L + + E+P I
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511
Query: 661 NLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDAN 695
LE L L+L S G++P LG+ +SL+ LD N
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 58 VGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104
+G++G AG+GKT L + N ++ E G + V + G+ L +
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYH 193
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 5/146 (3%)
Query: 570 NVVELKLFNTPIE-EVPSSIESLPNLKILNLGFCKRL-KRVSTGIXXXXXXXXXXXXDCS 627
N ++L N P +PSS+ +LP L L +G L + I +
Sbjct: 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 628 DLESFPEILEKMEPLEKLALDRSGIK-ELPSSIENLEGLKELQLMCCSKLGSLPESLGNL 686
+ P+ L +++ L L + + LP SI +L L + G++P+S G+
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 687 KSLVV-LDANRSAIL-QLPSSIADLN 710
L + +R+ + ++P + A+LN
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,415,730
Number of Sequences: 62578
Number of extensions: 1300798
Number of successful extensions: 2950
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2848
Number of HSP's gapped (non-prelim): 107
length of query: 1099
length of database: 14,973,337
effective HSP length: 109
effective length of query: 990
effective length of database: 8,152,335
effective search space: 8070811650
effective search space used: 8070811650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)