Query 001326
Match_columns 1099
No_of_seqs 963 out of 5710
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 21:53:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-106 4E-111 1043.7 84.2 911 6-1017 158-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.6E-60 1.9E-64 575.8 31.0 304 35-347 161-499 (889)
3 PLN00113 leucine-rich repeat r 100.0 9.3E-38 2E-42 405.9 29.4 455 349-811 42-535 (968)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-36 5E-41 336.4 16.4 265 37-307 1-281 (287)
5 PLN00113 leucine-rich repeat r 100.0 1.2E-34 2.5E-39 377.0 29.0 427 381-817 145-589 (968)
6 KOG0444 Cytoskeletal regulator 100.0 1.1E-31 2.5E-36 293.7 -5.9 349 423-796 23-380 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 2E-31 4.4E-36 291.8 -5.1 361 435-819 9-382 (1255)
8 KOG4194 Membrane glycoprotein 100.0 1.4E-29 3E-34 276.7 4.9 356 431-806 76-446 (873)
9 KOG4194 Membrane glycoprotein 99.9 4.1E-28 8.8E-33 265.3 6.4 368 378-776 80-466 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 2.3E-30 5E-35 271.4 -12.2 369 435-810 70-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 4.9E-28 1.1E-32 254.1 -10.4 375 435-818 47-523 (565)
12 KOG0618 Serine/threonine phosp 99.9 3.2E-27 6.9E-32 272.3 -5.3 417 381-812 26-489 (1081)
13 PLN03210 Resistant to P. syrin 99.9 1.9E-23 4.1E-28 271.6 23.8 334 497-860 554-909 (1153)
14 KOG0618 Serine/threonine phosp 99.9 2.7E-26 5.8E-31 264.8 -6.0 384 433-831 45-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 1.1E-18 2.4E-23 210.1 17.5 72 434-512 202-273 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 5.8E-18 1.3E-22 204.0 18.4 261 479-795 202-462 (788)
17 KOG4237 Extracellular matrix p 99.7 4E-18 8.8E-23 180.0 -0.2 245 429-674 63-357 (498)
18 PRK15370 E3 ubiquitin-protein 99.7 2.7E-16 5.9E-21 191.2 12.7 246 501-790 178-427 (754)
19 PRK15370 E3 ubiquitin-protein 99.7 5.4E-16 1.2E-20 188.6 14.6 229 561-810 190-426 (754)
20 KOG4237 Extracellular matrix p 99.6 1E-16 2.2E-21 169.5 -3.0 260 438-720 51-356 (498)
21 cd00116 LRR_RI Leucine-rich re 99.5 6.4E-15 1.4E-19 166.9 2.5 205 585-789 74-318 (319)
22 KOG0617 Ras suppressor protein 99.5 1.4E-15 3E-20 142.8 -4.6 162 590-776 31-194 (264)
23 KOG0617 Ras suppressor protein 99.5 9.8E-16 2.1E-20 143.8 -5.7 170 637-811 30-202 (264)
24 cd00116 LRR_RI Leucine-rich re 99.4 3.4E-14 7.4E-19 161.0 1.7 239 571-809 25-317 (319)
25 PRK04841 transcriptional regul 99.4 2.7E-11 5.8E-16 157.5 27.2 299 26-346 8-335 (903)
26 PRK00411 cdc6 cell division co 99.2 2.3E-09 5.1E-14 125.0 26.1 285 27-324 25-358 (394)
27 KOG4658 Apoptotic ATPase [Sign 99.1 1.9E-11 4.1E-16 151.5 4.5 248 569-817 523-788 (889)
28 TIGR02928 orc1/cdc6 family rep 99.1 1.6E-08 3.4E-13 116.7 26.6 287 27-325 10-351 (365)
29 TIGR00635 ruvB Holliday juncti 99.1 2.9E-09 6.2E-14 119.5 17.0 273 32-328 4-293 (305)
30 COG2909 MalT ATP-dependent tra 99.1 1.2E-08 2.6E-13 120.0 21.9 295 27-346 14-341 (894)
31 KOG1259 Nischarin, modulator o 99.0 2.8E-11 6E-16 123.9 -0.4 110 636-747 280-389 (490)
32 PF01637 Arch_ATPase: Archaeal 99.0 2.3E-10 5E-15 123.1 6.7 195 34-236 1-233 (234)
33 TIGR03015 pepcterm_ATPase puta 99.0 8.9E-09 1.9E-13 113.4 19.2 180 55-241 43-242 (269)
34 PF05729 NACHT: NACHT domain 99.0 2.5E-09 5.4E-14 108.2 12.0 143 56-206 1-163 (166)
35 PRK00080 ruvB Holliday junctio 99.0 6E-09 1.3E-13 117.6 16.2 263 27-327 20-313 (328)
36 KOG3207 Beta-tubulin folding c 99.0 9.8E-11 2.1E-15 126.6 1.5 156 635-790 167-338 (505)
37 KOG0532 Leucine-rich repeat (L 99.0 1.6E-11 3.6E-16 136.3 -5.0 172 595-771 78-250 (722)
38 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 125.7 1.6 155 636-790 142-313 (505)
39 KOG0532 Leucine-rich repeat (L 99.0 4E-11 8.7E-16 133.3 -2.8 183 622-809 81-270 (722)
40 COG3899 Predicted ATPase [Gene 99.0 1.5E-08 3.3E-13 126.6 18.9 327 33-372 1-407 (849)
41 KOG1259 Nischarin, modulator o 98.9 2.6E-10 5.7E-15 116.9 0.7 126 683-810 280-410 (490)
42 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.2E-14 126.7 6.6 153 641-795 141-294 (394)
43 COG4886 Leucine-rich repeat (L 98.9 6.4E-09 1.4E-13 121.4 9.7 179 569-750 116-295 (394)
44 PF14580 LRR_9: Leucine-rich r 98.8 2E-09 4.3E-14 107.4 4.0 107 684-791 16-126 (175)
45 KOG1909 Ran GTPase-activating 98.8 5.9E-10 1.3E-14 117.7 -1.1 184 588-790 88-310 (382)
46 PF14580 LRR_9: Leucine-rich r 98.8 4.1E-09 8.9E-14 105.2 3.4 125 639-786 18-148 (175)
47 COG2256 MGS1 ATPase related to 98.7 1E-07 2.2E-12 103.3 13.5 175 28-232 20-207 (436)
48 KOG1909 Ran GTPase-activating 98.7 1.5E-09 3.3E-14 114.6 -1.0 223 589-811 27-310 (382)
49 PRK06893 DNA replication initi 98.7 1E-07 2.2E-12 101.4 12.8 148 55-235 39-201 (229)
50 PTZ00112 origin recognition co 98.6 8.6E-07 1.9E-11 105.3 17.9 246 27-287 750-1030(1164)
51 PRK15386 type III secretion pr 98.6 1.1E-07 2.4E-12 106.0 8.1 134 659-808 48-186 (426)
52 PRK13342 recombination factor 98.5 1.2E-06 2.6E-11 102.0 15.7 180 27-237 7-196 (413)
53 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.6E-06 3.5E-11 92.7 14.8 173 31-238 14-202 (226)
54 PF05496 RuvB_N: Holliday junc 98.5 1.9E-06 4E-11 87.9 13.5 185 26-242 18-226 (233)
55 PRK15386 type III secretion pr 98.4 1E-06 2.2E-11 98.5 11.3 159 636-812 48-213 (426)
56 TIGR01242 26Sp45 26S proteasom 98.4 1.8E-06 3.8E-11 99.0 13.6 176 28-231 118-328 (364)
57 PRK07003 DNA polymerase III su 98.4 1.1E-05 2.4E-10 96.0 19.4 185 27-236 11-220 (830)
58 PF13173 AAA_14: AAA domain 98.4 1.7E-06 3.6E-11 83.1 10.1 121 56-198 3-127 (128)
59 PRK14961 DNA polymerase III su 98.4 1.3E-05 2.8E-10 91.7 18.8 192 28-233 12-216 (363)
60 PRK12402 replication factor C 98.4 5.3E-06 1.1E-10 94.7 15.3 197 28-234 11-223 (337)
61 PRK07471 DNA polymerase III su 98.3 4E-05 8.6E-10 86.8 21.5 202 27-238 14-239 (365)
62 KOG0531 Protein phosphatase 1, 98.3 6.2E-08 1.3E-12 113.3 -1.2 147 638-788 116-265 (414)
63 PRK14949 DNA polymerase III su 98.3 1E-05 2.2E-10 98.2 17.1 187 28-234 12-217 (944)
64 PRK04195 replication factor C 98.3 1.4E-05 3E-10 95.1 18.1 181 27-234 9-199 (482)
65 PRK14960 DNA polymerase III su 98.3 1.1E-05 2.4E-10 95.1 16.7 184 27-234 10-216 (702)
66 PRK00440 rfc replication facto 98.3 1.4E-05 3E-10 90.5 17.2 184 28-233 13-199 (319)
67 PRK14963 DNA polymerase III su 98.3 1.9E-05 4.2E-10 93.0 18.7 194 27-234 9-214 (504)
68 PF13191 AAA_16: AAA ATPase do 98.3 1.4E-06 3E-11 89.9 8.0 50 33-82 1-51 (185)
69 PLN03025 replication factor C 98.3 9.7E-06 2.1E-10 91.2 15.2 184 27-232 8-195 (319)
70 cd00009 AAA The AAA+ (ATPases 98.3 6.7E-06 1.5E-10 81.0 12.3 123 35-175 1-131 (151)
71 PRK12323 DNA polymerase III su 98.3 1.3E-05 2.8E-10 94.2 15.6 198 27-234 11-222 (700)
72 PRK08691 DNA polymerase III su 98.3 8.3E-06 1.8E-10 97.1 13.7 183 27-234 11-217 (709)
73 PRK05564 DNA polymerase III su 98.2 2.1E-05 4.5E-10 88.3 16.2 178 32-237 4-190 (313)
74 PRK14956 DNA polymerase III su 98.2 1.6E-05 3.4E-10 91.3 15.2 193 27-232 13-217 (484)
75 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3.1E-12 110.2 -1.5 213 570-789 73-288 (414)
76 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.5E-11 71.8 3.9 58 732-789 1-60 (61)
77 PLN03150 hypothetical protein; 98.2 2.4E-06 5.2E-11 104.6 7.9 103 619-721 421-526 (623)
78 PRK08727 hypothetical protein; 98.2 2.1E-05 4.5E-10 83.9 14.0 168 31-233 18-200 (233)
79 COG3903 Predicted ATPase [Gene 98.2 1.8E-06 4E-11 94.6 5.8 260 53-324 12-292 (414)
80 PTZ00202 tuzin; Provisional 98.2 1.4E-05 3E-10 88.7 12.5 164 27-206 257-434 (550)
81 PRK09112 DNA polymerase III su 98.2 3E-05 6.6E-10 87.2 15.8 198 27-238 18-241 (351)
82 PF13401 AAA_22: AAA domain; P 98.2 4.1E-06 8.9E-11 80.9 7.5 113 54-173 3-125 (131)
83 KOG2120 SCF ubiquitin ligase, 98.2 4.2E-08 9.1E-13 101.2 -6.7 169 641-811 186-375 (419)
84 PRK06645 DNA polymerase III su 98.2 3.9E-05 8.4E-10 90.1 16.8 187 27-233 16-225 (507)
85 PRK14957 DNA polymerase III su 98.2 4E-05 8.7E-10 90.5 16.7 185 28-237 12-221 (546)
86 PLN03150 hypothetical protein; 98.2 3.9E-06 8.4E-11 102.8 8.6 105 594-698 420-526 (623)
87 PRK08903 DnaA regulatory inact 98.2 2E-05 4.3E-10 84.2 13.0 176 30-241 16-203 (227)
88 KOG4341 F-box protein containi 98.2 7.9E-08 1.7E-12 104.0 -5.4 83 479-561 139-229 (483)
89 PRK05642 DNA replication initi 98.1 4.9E-05 1.1E-09 81.1 15.7 149 56-235 46-206 (234)
90 PRK07940 DNA polymerase III su 98.1 5.5E-05 1.2E-09 86.4 16.9 179 31-237 4-213 (394)
91 PF14516 AAA_35: AAA-like doma 98.1 0.00061 1.3E-08 76.7 25.1 278 27-332 6-321 (331)
92 PRK07994 DNA polymerase III su 98.1 4.7E-05 1E-09 91.3 16.8 194 27-234 11-217 (647)
93 PF13855 LRR_8: Leucine rich r 98.1 2.3E-06 4.9E-11 70.1 3.9 58 710-767 1-61 (61)
94 KOG2120 SCF ubiquitin ligase, 98.1 8.6E-08 1.9E-12 99.0 -5.7 176 570-765 186-373 (419)
95 PRK14962 DNA polymerase III su 98.1 5E-05 1.1E-09 88.9 16.2 188 27-239 9-221 (472)
96 TIGR02397 dnaX_nterm DNA polym 98.1 6.7E-05 1.5E-09 86.2 17.3 185 28-237 10-218 (355)
97 KOG2028 ATPase related to the 98.1 2.7E-05 5.9E-10 82.9 12.5 153 27-205 133-293 (554)
98 KOG1859 Leucine-rich repeat pr 98.1 6.8E-08 1.5E-12 110.6 -7.3 181 585-771 102-295 (1096)
99 COG1474 CDC6 Cdc6-related prot 98.1 7.3E-05 1.6E-09 84.5 16.9 204 27-237 12-238 (366)
100 PRK13341 recombination factor 98.1 2.9E-05 6.2E-10 95.1 14.5 173 28-232 24-212 (725)
101 PRK08084 DNA replication initi 98.1 4.6E-05 9.9E-10 81.5 14.3 168 33-235 24-207 (235)
102 PRK03992 proteasome-activating 98.1 2E-05 4.4E-10 90.7 12.4 174 29-231 128-337 (389)
103 PRK14951 DNA polymerase III su 98.1 7E-05 1.5E-09 89.6 17.0 194 28-234 12-222 (618)
104 KOG1859 Leucine-rich repeat pr 98.0 7E-08 1.5E-12 110.5 -8.7 97 689-787 166-263 (1096)
105 PRK14964 DNA polymerase III su 98.0 7.9E-05 1.7E-09 86.7 16.0 182 27-233 8-213 (491)
106 TIGR02903 spore_lon_C ATP-depe 98.0 7.2E-05 1.6E-09 90.9 16.0 207 28-240 150-398 (615)
107 PRK14958 DNA polymerase III su 98.0 0.00011 2.5E-09 86.8 17.2 183 27-234 11-217 (509)
108 PRK14955 DNA polymerase III su 98.0 0.00012 2.6E-09 84.8 17.0 200 27-234 11-225 (397)
109 PRK09087 hypothetical protein; 98.0 9.4E-05 2E-09 78.2 14.8 139 55-235 44-193 (226)
110 TIGR00678 holB DNA polymerase 98.0 0.00016 3.4E-09 74.7 15.5 161 43-233 3-187 (188)
111 PF00308 Bac_DnaA: Bacterial d 98.0 7.1E-05 1.5E-09 78.9 13.1 180 32-233 8-204 (219)
112 PRK05896 DNA polymerase III su 98.0 7.2E-05 1.6E-09 88.4 14.1 197 27-237 11-221 (605)
113 KOG2982 Uncharacterized conser 98.0 3.7E-06 8E-11 87.2 2.8 86 730-817 197-286 (418)
114 PRK14087 dnaA chromosomal repl 98.0 0.00014 3E-09 85.0 16.1 188 33-238 117-320 (450)
115 PRK14959 DNA polymerase III su 98.0 0.00016 3.4E-09 86.0 16.5 189 27-240 11-224 (624)
116 KOG2227 Pre-initiation complex 98.0 0.00028 6E-09 78.5 17.2 218 12-238 132-373 (529)
117 KOG2982 Uncharacterized conser 98.0 4.5E-06 9.9E-11 86.5 3.2 180 637-817 68-267 (418)
118 PRK14970 DNA polymerase III su 98.0 0.00028 6.2E-09 81.2 18.3 181 28-232 13-204 (367)
119 PRK14954 DNA polymerase III su 97.9 0.00033 7E-09 84.4 19.0 198 27-232 11-223 (620)
120 PRK14969 DNA polymerase III su 97.9 0.00012 2.7E-09 87.1 14.7 180 28-232 12-215 (527)
121 PRK14952 DNA polymerase III su 97.9 0.00042 9.1E-09 82.8 19.1 191 27-237 8-220 (584)
122 TIGR02639 ClpA ATP-dependent C 97.9 8E-05 1.7E-09 93.1 13.3 66 11-81 164-229 (731)
123 TIGR03689 pup_AAA proteasome A 97.9 0.00012 2.5E-09 85.7 13.6 162 29-206 179-378 (512)
124 PHA02544 44 clamp loader, smal 97.9 0.0001 2.2E-09 83.2 12.9 152 28-204 17-171 (316)
125 KOG4341 F-box protein containi 97.9 1.4E-06 2.9E-11 94.7 -2.5 251 592-863 138-420 (483)
126 PTZ00454 26S protease regulato 97.9 0.00019 4.2E-09 82.1 14.5 177 27-232 140-352 (398)
127 PRK09376 rho transcription ter 97.9 2.3E-05 5E-10 86.8 6.7 92 56-150 170-270 (416)
128 TIGR02881 spore_V_K stage V sp 97.9 0.00016 3.4E-09 78.9 13.2 151 33-208 7-193 (261)
129 PTZ00361 26 proteosome regulat 97.9 5E-05 1.1E-09 87.5 9.6 157 27-208 178-369 (438)
130 COG2255 RuvB Holliday junction 97.8 0.00048 1E-08 71.9 15.5 258 27-329 21-316 (332)
131 PF05673 DUF815: Protein of un 97.8 0.00066 1.4E-08 70.6 16.4 56 28-83 23-80 (249)
132 PRK07764 DNA polymerase III su 97.8 0.00045 9.9E-09 85.9 18.2 181 27-232 10-216 (824)
133 PRK08451 DNA polymerase III su 97.8 0.00034 7.4E-09 82.3 16.2 183 28-234 10-215 (535)
134 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00032 6.8E-09 88.4 16.6 66 11-81 169-234 (852)
135 PRK14950 DNA polymerase III su 97.8 0.00021 4.6E-09 86.8 14.3 196 27-235 11-219 (585)
136 PRK07133 DNA polymerase III su 97.8 0.00051 1.1E-08 83.0 16.9 196 27-237 13-220 (725)
137 PRK06305 DNA polymerase III su 97.8 0.00071 1.5E-08 79.2 17.8 186 28-236 13-222 (451)
138 PRK09111 DNA polymerase III su 97.8 0.00029 6.4E-09 84.6 14.9 195 27-234 19-230 (598)
139 cd01128 rho_factor Transcripti 97.8 4.3E-05 9.2E-10 81.5 6.9 92 55-149 16-116 (249)
140 TIGR02880 cbbX_cfxQ probable R 97.8 0.00049 1.1E-08 75.7 15.0 153 33-207 23-209 (284)
141 PRK14088 dnaA chromosomal repl 97.8 0.00063 1.4E-08 79.6 16.8 179 34-234 108-302 (440)
142 TIGR00362 DnaA chromosomal rep 97.8 0.00064 1.4E-08 79.3 16.9 176 34-233 113-306 (405)
143 PRK06620 hypothetical protein; 97.7 0.00031 6.8E-09 73.6 12.8 134 56-232 45-184 (214)
144 PRK14948 DNA polymerase III su 97.7 0.00039 8.4E-09 84.2 15.0 196 28-235 12-220 (620)
145 TIGR00767 rho transcription te 97.7 7E-05 1.5E-09 83.6 7.8 92 56-150 169-269 (415)
146 PRK14971 DNA polymerase III su 97.7 0.0013 2.9E-08 79.7 19.3 180 28-233 13-218 (614)
147 PRK00149 dnaA chromosomal repl 97.7 0.00064 1.4E-08 80.3 16.1 199 34-256 125-349 (450)
148 PRK14953 DNA polymerase III su 97.7 0.0011 2.4E-08 78.2 17.4 177 28-234 12-217 (486)
149 CHL00181 cbbX CbbX; Provisiona 97.7 0.00089 1.9E-08 73.5 15.4 154 33-208 24-211 (287)
150 KOG3665 ZYG-1-like serine/thre 97.7 9.3E-06 2E-10 98.9 -0.0 148 640-788 122-285 (699)
151 KOG0989 Replication factor C, 97.7 0.00036 7.9E-09 73.6 11.5 191 28-237 32-231 (346)
152 PF12799 LRR_4: Leucine Rich r 97.7 5.2E-05 1.1E-09 56.9 3.9 39 733-771 2-40 (44)
153 PRK06647 DNA polymerase III su 97.7 0.001 2.2E-08 79.8 16.9 188 27-234 11-217 (563)
154 KOG2543 Origin recognition com 97.7 0.0012 2.7E-08 71.7 15.5 169 30-206 4-193 (438)
155 CHL00095 clpC Clp protease ATP 97.6 0.00041 8.9E-09 87.9 13.8 65 11-80 161-225 (821)
156 PRK12422 chromosomal replicati 97.6 0.00088 1.9E-08 78.1 14.9 156 33-208 113-286 (445)
157 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00053 1.2E-08 87.1 14.1 50 30-81 171-220 (852)
158 PRK10865 protein disaggregatio 97.6 0.00076 1.6E-08 85.3 15.2 66 11-81 160-225 (857)
159 KOG4579 Leucine-rich repeat (L 97.6 4.1E-06 8.9E-11 77.1 -3.8 101 689-789 29-134 (177)
160 PRK08116 hypothetical protein; 97.6 0.00043 9.3E-09 75.3 10.9 102 56-174 115-221 (268)
161 CHL00176 ftsH cell division pr 97.6 0.001 2.2E-08 80.8 15.0 173 30-229 181-386 (638)
162 PRK05563 DNA polymerase III su 97.5 0.0021 4.6E-08 77.3 17.6 193 27-233 11-216 (559)
163 PRK14086 dnaA chromosomal repl 97.5 0.0015 3.2E-08 77.6 15.8 174 34-231 291-482 (617)
164 PRK05707 DNA polymerase III su 97.5 0.0025 5.5E-08 71.2 16.4 95 135-237 106-203 (328)
165 TIGR01241 FtsH_fam ATP-depende 97.5 0.00087 1.9E-08 80.2 13.5 174 31-231 54-260 (495)
166 PF00004 AAA: ATPase family as 97.5 0.00086 1.9E-08 64.6 11.1 23 58-80 1-23 (132)
167 COG0466 Lon ATP-dependent Lon 97.5 0.0006 1.3E-08 79.9 11.2 156 33-207 324-509 (782)
168 COG1222 RPT1 ATP-dependent 26S 97.4 0.0021 4.5E-08 69.5 13.7 177 27-232 146-358 (406)
169 COG3267 ExeA Type II secretory 97.4 0.0046 1E-07 64.1 15.7 201 30-239 26-247 (269)
170 PRK14965 DNA polymerase III su 97.4 0.0017 3.7E-08 78.5 14.6 188 27-237 11-221 (576)
171 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 69.8 6.3 81 710-790 42-125 (233)
172 PRK11034 clpA ATP-dependent Cl 97.4 0.00093 2E-08 82.6 12.3 65 11-80 168-232 (758)
173 COG1373 Predicted ATPase (AAA+ 97.4 0.0022 4.8E-08 73.9 14.6 162 40-237 25-192 (398)
174 PF12799 LRR_4: Leucine Rich r 97.4 0.00013 2.9E-09 54.6 2.7 37 688-724 2-38 (44)
175 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0023 5.1E-08 75.1 14.3 153 32-208 228-407 (489)
176 KOG3665 ZYG-1-like serine/thre 97.4 6.9E-05 1.5E-09 91.5 1.6 128 616-745 122-263 (699)
177 PRK07399 DNA polymerase III su 97.3 0.0047 1E-07 68.7 15.7 192 32-236 4-220 (314)
178 COG5238 RNA1 Ran GTPase-activa 97.3 0.0001 2.2E-09 75.8 2.3 37 589-625 27-67 (388)
179 PF05621 TniB: Bacterial TniB 97.3 0.0032 6.9E-08 67.8 13.4 202 31-237 33-261 (302)
180 smart00382 AAA ATPases associa 97.3 0.00055 1.2E-08 66.6 7.2 34 56-89 3-36 (148)
181 KOG1644 U2-associated snRNP A' 97.3 0.00048 1E-08 68.3 5.9 79 709-787 63-149 (233)
182 TIGR00602 rad24 checkpoint pro 97.3 0.001 2.2E-08 80.1 9.8 54 27-80 79-135 (637)
183 PRK12377 putative replication 97.2 0.0012 2.6E-08 70.4 9.4 36 55-90 101-136 (248)
184 TIGR01243 CDC48 AAA family ATP 97.2 0.0024 5.2E-08 80.3 13.7 176 30-232 176-382 (733)
185 COG0593 DnaA ATPase involved i 97.2 0.0031 6.6E-08 71.2 12.9 161 54-237 112-290 (408)
186 PRK10536 hypothetical protein; 97.2 0.0022 4.9E-08 67.6 10.9 136 32-175 55-214 (262)
187 PLN00020 ribulose bisphosphate 97.2 0.009 1.9E-07 65.9 15.8 154 53-232 146-333 (413)
188 TIGR01243 CDC48 AAA family ATP 97.2 0.0036 7.8E-08 78.7 14.5 172 32-231 453-657 (733)
189 PRK08181 transposase; Validate 97.2 0.00062 1.3E-08 73.6 6.4 35 56-90 107-141 (269)
190 TIGR00763 lon ATP-dependent pr 97.1 0.0064 1.4E-07 76.7 15.9 51 33-83 321-375 (775)
191 PRK07952 DNA replication prote 97.1 0.0026 5.7E-08 67.7 10.6 49 41-89 85-133 (244)
192 PRK09183 transposase/IS protei 97.1 0.00072 1.6E-08 73.2 6.3 34 56-89 103-136 (259)
193 PRK10787 DNA-binding ATP-depen 97.1 0.0043 9.2E-08 77.5 13.8 183 6-206 285-506 (784)
194 KOG2739 Leucine-rich acidic nu 97.1 0.00038 8.1E-09 72.2 3.3 114 703-817 36-161 (260)
195 TIGR02639 ClpA ATP-dependent C 97.1 0.0043 9.4E-08 77.8 13.3 50 31-80 453-509 (731)
196 PRK10865 protein disaggregatio 97.0 0.0065 1.4E-07 77.1 14.4 51 31-81 567-624 (857)
197 KOG0731 AAA+-type ATPase conta 97.0 0.016 3.4E-07 70.0 16.5 178 30-234 309-521 (774)
198 TIGR02640 gas_vesic_GvpN gas v 97.0 0.0085 1.8E-07 65.3 13.4 39 40-82 10-48 (262)
199 COG5238 RNA1 Ran GTPase-activa 97.0 0.00026 5.6E-09 72.9 1.4 88 613-700 27-133 (388)
200 KOG4579 Leucine-rich repeat (L 97.0 3.3E-05 7.1E-10 71.3 -4.5 35 688-722 78-112 (177)
201 PF01695 IstB_IS21: IstB-like 97.0 0.00059 1.3E-08 69.3 3.9 36 55-90 47-82 (178)
202 PF10443 RNA12: RNA12 protein; 97.0 0.11 2.5E-06 58.6 22.0 104 136-243 148-284 (431)
203 PRK08769 DNA polymerase III su 97.0 0.044 9.6E-07 60.8 18.7 95 135-238 112-209 (319)
204 PRK08118 topology modulation p 97.0 0.0021 4.5E-08 64.6 7.5 33 57-89 3-38 (167)
205 PRK06526 transposase; Provisio 97.0 0.00086 1.9E-08 72.1 4.9 28 55-82 98-125 (254)
206 PRK11331 5-methylcytosine-spec 96.9 0.0034 7.4E-08 71.6 9.7 55 32-90 175-231 (459)
207 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0066 1.4E-07 69.8 11.7 153 31-207 189-375 (802)
208 PRK06921 hypothetical protein; 96.9 0.0034 7.3E-08 68.2 9.1 36 55-90 117-153 (266)
209 PRK06090 DNA polymerase III su 96.9 0.076 1.7E-06 58.9 19.5 107 136-256 108-217 (319)
210 PRK08058 DNA polymerase III su 96.8 0.022 4.9E-07 64.1 15.4 147 32-205 5-181 (329)
211 KOG0730 AAA+-type ATPase [Post 96.8 0.018 3.8E-07 67.4 14.4 164 32-220 434-630 (693)
212 PRK06835 DNA replication prote 96.8 0.0045 9.8E-08 69.0 9.4 35 56-90 184-218 (329)
213 PRK00771 signal recognition pa 96.8 0.018 3.9E-07 66.7 14.0 75 6-82 38-122 (437)
214 COG2812 DnaX DNA polymerase II 96.8 0.0094 2E-07 69.5 11.6 191 28-231 12-214 (515)
215 PRK11889 flhF flagellar biosyn 96.7 0.019 4.2E-07 64.2 13.3 36 54-89 240-275 (436)
216 PRK12608 transcription termina 96.7 0.0052 1.1E-07 68.5 8.7 104 42-149 121-233 (380)
217 PRK06871 DNA polymerase III su 96.7 0.049 1.1E-06 60.6 16.2 175 41-234 11-200 (325)
218 cd01131 PilT Pilus retraction 96.7 0.0037 8E-08 64.9 7.1 109 56-177 2-112 (198)
219 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0056 1.2E-07 65.7 8.3 91 56-149 70-176 (274)
220 KOG2004 Mitochondrial ATP-depe 96.7 0.0034 7.3E-08 73.4 7.0 51 33-83 412-466 (906)
221 PRK14974 cell division protein 96.6 0.031 6.6E-07 62.5 14.3 76 7-82 79-167 (336)
222 PRK07261 topology modulation p 96.6 0.0069 1.5E-07 61.2 8.4 23 57-79 2-24 (171)
223 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0024 5.3E-08 70.8 5.4 48 33-80 52-103 (361)
224 KOG0741 AAA+-type ATPase [Post 96.6 0.017 3.6E-07 65.4 11.7 132 53-205 536-685 (744)
225 TIGR03346 chaperone_ClpB ATP-d 96.6 0.006 1.3E-07 77.7 9.6 52 31-82 564-622 (852)
226 TIGR02902 spore_lonB ATP-depen 96.6 0.014 3.1E-07 70.1 12.1 50 28-79 61-110 (531)
227 PF04665 Pox_A32: Poxvirus A32 96.6 0.0048 1E-07 64.9 7.0 34 57-90 15-48 (241)
228 PRK06964 DNA polymerase III su 96.6 0.015 3.4E-07 65.0 11.4 92 135-237 131-225 (342)
229 PRK07993 DNA polymerase III su 96.6 0.038 8.3E-07 62.0 14.6 179 40-235 10-202 (334)
230 TIGR00064 ftsY signal recognit 96.5 0.025 5.5E-07 61.6 12.3 80 8-89 20-106 (272)
231 CHL00095 clpC Clp protease ATP 96.5 0.01 2.2E-07 75.4 10.7 51 31-81 508-565 (821)
232 COG0542 clpA ATP-binding subun 96.5 0.012 2.7E-07 71.3 10.7 117 32-159 491-618 (786)
233 PRK08939 primosomal protein Dn 96.5 0.014 3E-07 64.7 10.2 55 36-90 135-191 (306)
234 KOG2228 Origin recognition com 96.5 0.027 5.9E-07 60.6 11.7 176 30-206 22-219 (408)
235 KOG2739 Leucine-rich acidic nu 96.5 0.0011 2.3E-08 68.9 1.3 80 663-744 43-128 (260)
236 KOG0735 AAA+-type ATPase [Post 96.4 0.012 2.6E-07 68.9 9.5 74 55-146 431-504 (952)
237 PF13207 AAA_17: AAA domain; P 96.4 0.0025 5.5E-08 60.3 3.7 23 57-79 1-23 (121)
238 PRK10733 hflB ATP-dependent me 96.4 0.027 5.8E-07 69.4 13.4 153 32-208 152-337 (644)
239 COG1484 DnaC DNA replication p 96.4 0.007 1.5E-07 65.2 7.4 37 54-90 104-140 (254)
240 COG1618 Predicted nucleotide k 96.4 0.0036 7.9E-08 60.0 4.5 39 55-93 5-45 (179)
241 cd01120 RecA-like_NTPases RecA 96.4 0.018 3.9E-07 57.5 10.1 34 57-90 1-34 (165)
242 COG0470 HolB ATPase involved i 96.4 0.025 5.5E-07 64.0 12.4 49 33-81 2-50 (325)
243 PRK04296 thymidine kinase; Pro 96.4 0.005 1.1E-07 63.4 5.9 110 56-175 3-117 (190)
244 PF02562 PhoH: PhoH-like prote 96.4 0.007 1.5E-07 62.2 6.6 130 36-175 4-157 (205)
245 PRK11034 clpA ATP-dependent Cl 96.4 0.011 2.4E-07 73.3 9.4 49 32-80 458-513 (758)
246 TIGR03345 VI_ClpV1 type VI sec 96.3 0.014 3E-07 73.9 10.4 50 32-81 566-622 (852)
247 PF13177 DNA_pol3_delta2: DNA 96.3 0.026 5.7E-07 56.4 10.3 121 36-175 1-143 (162)
248 PRK06696 uridine kinase; Valid 96.3 0.0073 1.6E-07 64.1 6.4 46 37-82 3-49 (223)
249 PF00448 SRP54: SRP54-type pro 96.3 0.011 2.4E-07 61.0 7.4 36 55-90 1-36 (196)
250 KOG1514 Origin recognition com 96.3 0.11 2.5E-06 61.3 16.2 200 29-239 393-623 (767)
251 PRK07667 uridine kinase; Provi 96.2 0.0088 1.9E-07 61.8 6.5 42 41-82 3-44 (193)
252 COG1223 Predicted ATPase (AAA+ 96.2 0.029 6.2E-07 58.0 9.8 173 31-231 120-319 (368)
253 COG2607 Predicted ATPase (AAA+ 96.2 0.043 9.3E-07 56.3 10.8 54 32-85 60-115 (287)
254 PHA00729 NTP-binding motif con 96.2 0.029 6.3E-07 58.4 9.9 28 53-80 15-42 (226)
255 cd01394 radB RadB. The archaea 96.2 0.018 3.9E-07 61.0 8.7 49 42-90 6-54 (218)
256 PRK04132 replication factor C 96.2 0.093 2E-06 65.3 15.9 154 60-234 569-728 (846)
257 PF07728 AAA_5: AAA domain (dy 96.2 0.004 8.8E-08 60.6 3.4 22 58-79 2-23 (139)
258 PRK08699 DNA polymerase III su 96.1 0.12 2.6E-06 57.8 15.4 87 135-233 113-202 (325)
259 KOG1947 Leucine rich repeat pr 96.1 0.00093 2E-08 80.3 -1.5 36 731-766 268-306 (482)
260 KOG1947 Leucine rich repeat pr 96.1 0.00065 1.4E-08 81.7 -2.9 35 591-625 187-223 (482)
261 KOG0744 AAA+-type ATPase [Post 96.1 0.033 7.3E-07 59.4 10.0 35 55-89 177-215 (423)
262 COG0464 SpoVK ATPases of the A 96.1 0.044 9.5E-07 65.9 12.6 155 32-210 242-427 (494)
263 KOG2123 Uncharacterized conser 96.1 0.00032 7E-09 72.5 -4.8 79 687-766 19-99 (388)
264 TIGR00959 ffh signal recogniti 96.0 0.095 2.1E-06 60.6 14.3 74 7-80 42-124 (428)
265 PRK09361 radB DNA repair and r 96.0 0.017 3.8E-07 61.4 7.7 47 44-90 12-58 (225)
266 PRK12723 flagellar biosynthesi 96.0 0.066 1.4E-06 61.1 12.5 27 54-80 173-199 (388)
267 KOG0728 26S proteasome regulat 96.0 0.15 3.3E-06 52.2 13.5 147 34-208 149-333 (404)
268 KOG0991 Replication factor C, 96.0 0.016 3.4E-07 58.8 6.5 103 28-149 23-126 (333)
269 TIGR01817 nifA Nif-specific re 95.9 0.077 1.7E-06 64.4 13.7 50 30-79 194-243 (534)
270 COG0542 clpA ATP-binding subun 95.9 0.02 4.3E-07 69.7 8.3 48 32-81 170-217 (786)
271 PRK06067 flagellar accessory p 95.9 0.033 7.2E-07 59.6 9.2 49 42-90 12-60 (234)
272 PRK10867 signal recognition pa 95.9 0.1 2.2E-06 60.4 13.6 76 7-82 43-127 (433)
273 cd01129 PulE-GspE PulE/GspE Th 95.9 0.026 5.6E-07 61.3 8.3 100 41-155 69-168 (264)
274 KOG1969 DNA replication checkp 95.9 0.022 4.8E-07 67.1 8.0 76 53-148 324-399 (877)
275 PRK12724 flagellar biosynthesi 95.8 0.13 2.8E-06 58.7 13.7 25 55-79 223-247 (432)
276 cd01121 Sms Sms (bacterial rad 95.8 0.037 8E-07 63.0 9.6 49 42-90 69-117 (372)
277 TIGR02974 phageshock_pspF psp 95.8 0.07 1.5E-06 60.0 11.8 45 34-78 1-45 (329)
278 KOG1970 Checkpoint RAD17-RFC c 95.8 0.11 2.4E-06 59.7 12.7 48 32-79 82-134 (634)
279 TIGR02237 recomb_radB DNA repa 95.8 0.026 5.5E-07 59.4 7.6 44 47-90 4-47 (209)
280 TIGR01425 SRP54_euk signal rec 95.7 0.15 3.2E-06 58.7 13.9 76 7-82 43-127 (429)
281 PRK15455 PrkA family serine pr 95.7 0.011 2.3E-07 69.0 4.9 50 32-81 76-129 (644)
282 TIGR01420 pilT_fam pilus retra 95.7 0.021 4.5E-07 64.8 7.1 109 55-175 122-231 (343)
283 PRK05703 flhF flagellar biosyn 95.7 0.16 3.5E-06 59.1 14.4 36 55-90 221-258 (424)
284 PRK10416 signal recognition pa 95.7 0.029 6.3E-07 62.5 7.9 74 7-82 61-141 (318)
285 KOG2035 Replication factor C, 95.7 0.34 7.4E-06 51.0 14.8 211 31-257 12-259 (351)
286 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.025 5.3E-07 55.4 6.4 102 55-178 26-131 (144)
287 KOG0733 Nuclear AAA ATPase (VC 95.6 0.071 1.5E-06 61.7 10.6 128 55-207 545-693 (802)
288 PF01583 APS_kinase: Adenylyls 95.6 0.019 4.2E-07 56.2 5.4 35 56-90 3-37 (156)
289 PRK08533 flagellar accessory p 95.6 0.037 8E-07 58.9 8.0 45 46-90 15-59 (230)
290 KOG0729 26S proteasome regulat 95.6 0.16 3.5E-06 52.5 12.0 52 34-90 179-241 (435)
291 PRK05541 adenylylsulfate kinas 95.6 0.015 3.2E-07 59.2 4.8 36 54-89 6-41 (176)
292 PF13238 AAA_18: AAA domain; P 95.6 0.01 2.2E-07 56.7 3.4 22 58-79 1-22 (129)
293 PRK11608 pspF phage shock prot 95.6 0.032 7E-07 62.7 7.9 48 31-78 5-52 (326)
294 cd01393 recA_like RecA is a b 95.6 0.073 1.6E-06 56.7 10.3 48 43-90 7-60 (226)
295 KOG2123 Uncharacterized conser 95.5 0.00065 1.4E-08 70.3 -5.5 87 708-795 17-105 (388)
296 cd00544 CobU Adenosylcobinamid 95.5 0.036 7.8E-07 55.6 7.0 80 57-145 1-82 (169)
297 PRK15429 formate hydrogenlyase 95.5 0.06 1.3E-06 67.4 10.5 50 30-79 374-423 (686)
298 PRK14722 flhF flagellar biosyn 95.4 0.12 2.7E-06 58.3 11.7 35 55-89 137-173 (374)
299 PF00485 PRK: Phosphoribulokin 95.4 0.014 3E-07 60.5 3.9 26 57-82 1-26 (194)
300 KOG0651 26S proteasome regulat 95.4 0.062 1.3E-06 57.2 8.4 52 32-83 132-194 (388)
301 COG1066 Sms Predicted ATP-depe 95.4 0.085 1.8E-06 58.6 9.8 97 41-146 79-178 (456)
302 COG4608 AppF ABC-type oligopep 95.3 0.045 9.6E-07 57.9 7.3 125 54-180 38-176 (268)
303 PRK13531 regulatory ATPase Rav 95.3 0.032 7E-07 64.4 6.8 46 32-81 20-65 (498)
304 cd03214 ABC_Iron-Siderophores_ 95.3 0.053 1.1E-06 55.4 7.8 119 55-177 25-161 (180)
305 PRK12726 flagellar biosynthesi 95.3 0.26 5.6E-06 55.3 13.4 37 54-90 205-241 (407)
306 PF07726 AAA_3: ATPase family 95.3 0.012 2.6E-07 54.9 2.6 28 58-85 2-29 (131)
307 cd03223 ABCD_peroxisomal_ALDP 95.3 0.045 9.7E-07 55.1 7.1 116 55-177 27-151 (166)
308 PF00437 T2SE: Type II/IV secr 95.3 0.015 3.2E-07 63.9 3.9 124 32-172 104-230 (270)
309 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.058 1.2E-06 55.3 7.9 23 57-79 1-23 (183)
310 cd03115 SRP The signal recogni 95.2 0.12 2.5E-06 52.5 9.9 26 57-82 2-27 (173)
311 cd03216 ABC_Carb_Monos_I This 95.2 0.027 5.9E-07 56.5 5.1 115 56-178 27-146 (163)
312 KOG0652 26S proteasome regulat 95.2 0.45 9.8E-06 49.2 13.5 170 26-223 165-373 (424)
313 KOG0743 AAA+-type ATPase [Post 95.1 0.22 4.7E-06 56.4 12.3 175 33-244 201-417 (457)
314 COG0572 Udk Uridine kinase [Nu 95.1 0.028 6E-07 57.8 4.9 30 53-82 6-35 (218)
315 cd03222 ABC_RNaseL_inhibitor T 95.1 0.041 8.8E-07 55.7 6.1 104 56-179 26-137 (177)
316 TIGR00416 sms DNA repair prote 95.1 0.081 1.8E-06 62.1 9.4 50 41-90 80-129 (454)
317 PRK11823 DNA repair protein Ra 95.1 0.097 2.1E-06 61.4 9.9 50 41-90 66-115 (446)
318 PRK06217 hypothetical protein; 95.0 0.093 2E-06 53.7 8.7 24 57-80 3-26 (183)
319 PTZ00301 uridine kinase; Provi 95.0 0.021 4.5E-07 59.6 3.9 29 55-83 3-31 (210)
320 KOG0734 AAA+-type ATPase conta 95.0 0.16 3.4E-06 57.9 10.8 150 31-208 303-486 (752)
321 cd02019 NK Nucleoside/nucleoti 95.0 0.021 4.5E-07 47.8 3.1 23 57-79 1-23 (69)
322 PRK03839 putative kinase; Prov 95.0 0.02 4.3E-07 58.6 3.6 24 57-80 2-25 (180)
323 COG2884 FtsE Predicted ATPase 95.0 0.089 1.9E-06 52.2 7.6 55 125-181 144-204 (223)
324 COG1875 NYN ribonuclease and A 95.0 0.2 4.3E-06 54.8 10.9 39 36-76 228-266 (436)
325 PRK04040 adenylate kinase; Pro 95.0 0.027 5.9E-07 57.7 4.4 25 56-80 3-27 (188)
326 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.035 7.5E-07 55.3 5.1 116 56-180 26-146 (157)
327 cd01122 GP4d_helicase GP4d_hel 94.9 0.17 3.8E-06 55.5 11.1 53 55-114 30-83 (271)
328 PRK00625 shikimate kinase; Pro 94.9 0.021 4.5E-07 57.6 3.5 24 57-80 2-25 (173)
329 TIGR02858 spore_III_AA stage I 94.9 0.074 1.6E-06 57.6 7.9 118 53-177 109-232 (270)
330 PRK09270 nucleoside triphospha 94.9 0.038 8.1E-07 58.9 5.5 31 52-82 30-60 (229)
331 PRK12727 flagellar biosynthesi 94.9 0.12 2.7E-06 60.3 9.9 29 54-82 349-377 (559)
332 PRK05480 uridine/cytidine kina 94.9 0.025 5.5E-07 59.4 4.1 27 53-79 4-30 (209)
333 COG4088 Predicted nucleotide k 94.8 0.018 3.9E-07 57.5 2.6 29 56-84 2-30 (261)
334 PRK06762 hypothetical protein; 94.8 0.025 5.4E-07 56.9 3.7 24 56-79 3-26 (166)
335 cd03228 ABCC_MRP_Like The MRP 94.8 0.067 1.5E-06 54.1 6.9 34 55-89 28-61 (171)
336 PRK08233 hypothetical protein; 94.8 0.023 5E-07 58.1 3.5 26 55-80 3-28 (182)
337 cd00561 CobA_CobO_BtuR ATP:cor 94.8 0.33 7.1E-06 47.9 11.2 117 56-175 3-139 (159)
338 TIGR00235 udk uridine kinase. 94.8 0.033 7.1E-07 58.4 4.5 28 53-80 4-31 (207)
339 cd03247 ABCC_cytochrome_bd The 94.7 0.11 2.4E-06 53.0 8.2 24 56-79 29-52 (178)
340 TIGR03574 selen_PSTK L-seryl-t 94.7 0.046 9.9E-07 59.2 5.7 26 57-82 1-26 (249)
341 PRK05022 anaerobic nitric oxid 94.7 0.091 2E-06 63.2 8.6 50 30-79 185-234 (509)
342 PF13306 LRR_5: Leucine rich r 94.7 0.13 2.8E-06 49.1 8.1 86 390-487 2-90 (129)
343 TIGR02012 tigrfam_recA protein 94.7 0.097 2.1E-06 57.9 8.0 50 41-90 40-90 (321)
344 TIGR02788 VirB11 P-type DNA tr 94.7 0.058 1.2E-06 60.3 6.4 110 55-175 144-254 (308)
345 PF00910 RNA_helicase: RNA hel 94.6 0.022 4.8E-07 52.5 2.5 26 58-83 1-26 (107)
346 COG0465 HflB ATP-dependent Zn 94.5 0.2 4.4E-06 59.5 10.7 156 29-208 147-335 (596)
347 cd03238 ABC_UvrA The excision 94.5 0.12 2.7E-06 52.2 7.8 22 56-77 22-43 (176)
348 PRK00131 aroK shikimate kinase 94.5 0.031 6.8E-07 56.7 3.5 26 55-80 4-29 (175)
349 PTZ00088 adenylate kinase 1; P 94.4 0.064 1.4E-06 56.8 5.7 22 58-79 9-30 (229)
350 cd01130 VirB11-like_ATPase Typ 94.4 0.034 7.3E-07 57.2 3.6 92 55-155 25-119 (186)
351 COG0563 Adk Adenylate kinase a 94.4 0.11 2.3E-06 52.7 7.0 23 57-79 2-24 (178)
352 TIGR01069 mutS2 MutS2 family p 94.4 0.043 9.2E-07 68.6 5.0 183 54-258 321-522 (771)
353 PF13671 AAA_33: AAA domain; P 94.4 0.036 7.7E-07 54.1 3.5 24 57-80 1-24 (143)
354 cd01125 repA Hexameric Replica 94.3 0.32 6.9E-06 52.2 11.1 23 57-79 3-25 (239)
355 COG0468 RecA RecA/RadA recombi 94.3 0.19 4.1E-06 54.3 9.2 46 45-90 50-95 (279)
356 PRK13947 shikimate kinase; Pro 94.3 0.034 7.4E-07 56.3 3.4 26 57-82 3-28 (171)
357 PRK06547 hypothetical protein; 94.3 0.044 9.6E-07 55.2 4.1 27 53-79 13-39 (172)
358 cd00983 recA RecA is a bacter 94.3 0.14 3.1E-06 56.6 8.4 50 41-90 40-90 (325)
359 PRK08356 hypothetical protein; 94.3 0.12 2.6E-06 53.5 7.4 21 56-76 6-26 (195)
360 PRK09354 recA recombinase A; P 94.3 0.15 3.2E-06 57.0 8.5 50 41-90 45-95 (349)
361 PF08433 KTI12: Chromatin asso 94.2 0.13 2.8E-06 55.8 7.8 26 56-81 2-27 (270)
362 TIGR00150 HI0065_YjeE ATPase, 94.2 0.057 1.2E-06 51.4 4.4 40 40-79 7-46 (133)
363 PF10236 DAP3: Mitochondrial r 94.2 2 4.4E-05 47.8 17.4 48 187-234 258-306 (309)
364 TIGR03499 FlhF flagellar biosy 94.2 0.16 3.5E-06 55.8 8.6 28 54-81 193-220 (282)
365 TIGR01360 aden_kin_iso1 adenyl 94.2 0.039 8.4E-07 56.8 3.6 26 54-79 2-27 (188)
366 cd03281 ABC_MSH5_euk MutS5 hom 94.2 0.035 7.6E-07 58.3 3.2 23 55-77 29-51 (213)
367 cd03230 ABC_DR_subfamily_A Thi 94.1 0.13 2.8E-06 52.1 7.2 25 55-79 26-50 (173)
368 cd03240 ABC_Rad50 The catalyti 94.1 0.17 3.8E-06 52.7 8.3 21 56-76 23-43 (204)
369 cd03246 ABCC_Protease_Secretio 94.1 0.15 3.3E-06 51.7 7.6 25 56-80 29-53 (173)
370 COG0467 RAD55 RecA-superfamily 94.1 0.14 3E-06 55.8 7.8 44 47-90 15-58 (260)
371 PRK06731 flhF flagellar biosyn 94.1 0.67 1.5E-05 50.2 12.8 35 55-89 75-109 (270)
372 PF00406 ADK: Adenylate kinase 94.1 0.048 1E-06 53.9 3.7 88 60-156 1-94 (151)
373 TIGR03600 phage_DnaB phage rep 94.0 0.47 1E-05 55.7 12.6 53 55-114 194-247 (421)
374 TIGR00390 hslU ATP-dependent p 94.0 0.15 3.2E-06 57.9 7.8 52 32-83 12-75 (441)
375 cd02027 APSK Adenosine 5'-phos 94.0 0.16 3.4E-06 50.1 7.2 24 57-80 1-24 (149)
376 PF07693 KAP_NTPase: KAP famil 94.0 0.18 3.8E-06 57.1 8.8 76 38-113 2-80 (325)
377 PRK00889 adenylylsulfate kinas 94.0 0.075 1.6E-06 54.0 5.1 27 55-81 4-30 (175)
378 cd02028 UMPK_like Uridine mono 94.0 0.062 1.3E-06 54.7 4.4 26 57-82 1-26 (179)
379 cd00227 CPT Chloramphenicol (C 94.0 0.049 1.1E-06 55.3 3.7 25 56-80 3-27 (175)
380 KOG0739 AAA+-type ATPase [Post 94.0 0.4 8.6E-06 50.8 10.1 152 32-208 133-314 (439)
381 PRK15115 response regulator Gl 93.9 0.79 1.7E-05 54.4 14.5 48 32-79 134-181 (444)
382 PF03308 ArgK: ArgK protein; 93.9 0.12 2.5E-06 54.6 6.3 42 41-82 15-56 (266)
383 COG1428 Deoxynucleoside kinase 93.9 0.047 1E-06 55.3 3.3 26 55-80 4-29 (216)
384 PRK03846 adenylylsulfate kinas 93.9 0.077 1.7E-06 55.1 5.1 37 53-89 22-58 (198)
385 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.18 3.9E-06 54.0 8.1 48 43-90 9-56 (237)
386 PF00158 Sigma54_activat: Sigm 93.9 0.045 9.7E-07 54.9 3.1 45 34-78 1-45 (168)
387 PRK11388 DNA-binding transcrip 93.8 0.9 2E-05 56.6 15.2 50 30-79 323-372 (638)
388 cd03232 ABC_PDR_domain2 The pl 93.8 0.23 5E-06 51.3 8.4 24 55-78 33-56 (192)
389 PF03266 NTPase_1: NTPase; In 93.8 0.081 1.8E-06 53.1 4.7 24 58-81 2-25 (168)
390 KOG0738 AAA+-type ATPase [Post 93.8 0.14 3.1E-06 56.2 6.7 68 14-81 193-271 (491)
391 PRK05439 pantothenate kinase; 93.8 0.088 1.9E-06 58.0 5.4 30 52-81 83-112 (311)
392 TIGR02782 TrbB_P P-type conjug 93.8 0.17 3.6E-06 56.1 7.6 89 56-155 133-223 (299)
393 cd01124 KaiC KaiC is a circadi 93.7 0.13 2.8E-06 52.8 6.4 34 57-90 1-34 (187)
394 PRK13949 shikimate kinase; Pro 93.7 0.054 1.2E-06 54.6 3.3 24 57-80 3-26 (169)
395 KOG1051 Chaperone HSP104 and r 93.7 0.71 1.5E-05 57.4 13.4 104 32-148 562-672 (898)
396 TIGR00708 cobA cob(I)alamin ad 93.6 0.29 6.3E-06 48.8 8.3 115 55-174 5-140 (173)
397 PF03205 MobB: Molybdopterin g 93.6 0.087 1.9E-06 51.1 4.6 32 56-87 1-32 (140)
398 COG1224 TIP49 DNA helicase TIP 93.6 0.14 2.9E-06 55.7 6.2 56 29-84 36-94 (450)
399 PF00560 LRR_1: Leucine Rich R 93.6 0.028 6E-07 35.0 0.7 18 757-774 2-19 (22)
400 PRK10820 DNA-binding transcrip 93.6 0.33 7.1E-06 58.5 10.4 51 28-78 200-250 (520)
401 COG1121 ZnuC ABC-type Mn/Zn tr 93.6 0.29 6.4E-06 51.8 8.6 53 126-180 147-205 (254)
402 PRK13948 shikimate kinase; Pro 93.6 0.058 1.3E-06 54.8 3.3 28 54-81 9-36 (182)
403 COG3854 SpoIIIAA ncharacterize 93.6 0.22 4.7E-06 50.9 7.2 112 54-173 136-252 (308)
404 cd02024 NRK1 Nicotinamide ribo 93.6 0.05 1.1E-06 55.4 2.8 23 57-79 1-23 (187)
405 COG1136 SalX ABC-type antimicr 93.5 0.1 2.2E-06 54.4 5.0 56 125-181 149-210 (226)
406 cd02025 PanK Pantothenate kina 93.5 0.054 1.2E-06 57.1 3.1 24 57-80 1-24 (220)
407 COG1419 FlhF Flagellar GTP-bin 93.5 0.61 1.3E-05 52.5 11.3 36 55-90 203-240 (407)
408 COG1703 ArgK Putative periplas 93.4 0.15 3.3E-06 54.4 6.2 55 41-96 37-91 (323)
409 PRK06995 flhF flagellar biosyn 93.4 0.56 1.2E-05 55.0 11.4 26 55-80 256-281 (484)
410 cd00464 SK Shikimate kinase (S 93.4 0.066 1.4E-06 53.0 3.4 23 58-80 2-24 (154)
411 cd02023 UMPK Uridine monophosp 93.4 0.054 1.2E-06 56.3 2.9 23 57-79 1-23 (198)
412 cd00071 GMPK Guanosine monopho 93.4 0.058 1.3E-06 52.2 2.9 27 57-83 1-27 (137)
413 PRK05201 hslU ATP-dependent pr 93.4 0.096 2.1E-06 59.4 4.9 52 32-83 15-78 (443)
414 COG0703 AroK Shikimate kinase 93.4 0.067 1.4E-06 52.9 3.3 28 56-83 3-30 (172)
415 PRK07132 DNA polymerase III su 93.4 5.3 0.00011 44.1 18.4 168 41-237 5-185 (299)
416 PRK13946 shikimate kinase; Pro 93.3 0.064 1.4E-06 55.0 3.3 26 55-80 10-35 (184)
417 PRK10751 molybdopterin-guanine 93.3 0.13 2.9E-06 51.4 5.4 29 54-82 5-33 (173)
418 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.21 4.5E-06 54.3 7.3 38 53-90 34-71 (259)
419 cd02021 GntK Gluconate kinase 93.3 0.06 1.3E-06 53.1 2.9 23 57-79 1-23 (150)
420 PRK12678 transcription termina 93.3 0.14 3E-06 59.9 6.1 92 56-150 417-517 (672)
421 PF06068 TIP49: TIP49 C-termin 93.3 0.12 2.5E-06 57.3 5.2 60 29-88 21-83 (398)
422 cd03283 ABC_MutS-like MutS-lik 93.3 0.39 8.5E-06 49.8 9.0 23 56-78 26-48 (199)
423 CHL00206 ycf2 Ycf2; Provisiona 93.3 0.73 1.6E-05 61.2 12.9 27 54-80 1629-1655(2281)
424 cd02020 CMPK Cytidine monophos 93.2 0.067 1.5E-06 52.4 3.2 23 57-79 1-23 (147)
425 KOG0727 26S proteasome regulat 93.2 0.13 2.9E-06 52.8 5.1 52 32-83 155-217 (408)
426 TIGR02322 phosphon_PhnN phosph 93.2 0.071 1.5E-06 54.4 3.4 25 56-80 2-26 (179)
427 PRK14528 adenylate kinase; Pro 93.2 0.2 4.4E-06 51.4 6.7 24 56-79 2-25 (186)
428 PRK00279 adk adenylate kinase; 93.2 0.25 5.4E-06 52.1 7.6 23 57-79 2-24 (215)
429 KOG0726 26S proteasome regulat 93.2 0.094 2E-06 55.1 4.1 60 24-83 177-247 (440)
430 TIGR00764 lon_rel lon-related 93.2 0.17 3.6E-06 61.8 7.1 58 31-92 17-75 (608)
431 PF03969 AFG1_ATPase: AFG1-lik 93.2 0.19 4.2E-06 56.9 7.1 103 53-174 60-167 (362)
432 PRK13765 ATP-dependent proteas 93.2 0.14 2.9E-06 62.4 6.2 76 27-112 26-102 (637)
433 PRK14526 adenylate kinase; Pro 93.2 0.18 3.9E-06 52.7 6.4 22 58-79 3-24 (211)
434 PF03215 Rad17: Rad17 cell cyc 93.2 0.089 1.9E-06 62.4 4.5 60 28-89 15-77 (519)
435 PRK05973 replicative DNA helic 93.2 0.24 5.2E-06 52.4 7.2 37 54-90 63-99 (237)
436 PRK04220 2-phosphoglycerate ki 93.1 0.2 4.2E-06 54.7 6.7 26 54-79 91-116 (301)
437 KOG3928 Mitochondrial ribosome 93.1 0.84 1.8E-05 50.9 11.3 52 187-241 405-460 (461)
438 TIGR00176 mobB molybdopterin-g 93.1 0.11 2.4E-06 51.3 4.4 26 57-82 1-26 (155)
439 TIGR01351 adk adenylate kinase 93.0 0.19 4E-06 52.8 6.3 22 58-79 2-23 (210)
440 PF14532 Sigma54_activ_2: Sigm 93.0 0.038 8.2E-07 53.7 1.0 46 35-80 1-46 (138)
441 PF12775 AAA_7: P-loop contain 93.0 0.097 2.1E-06 57.1 4.2 25 56-80 34-58 (272)
442 COG0529 CysC Adenylylsulfate k 93.0 0.15 3.2E-06 50.1 4.9 36 54-90 22-57 (197)
443 PRK05057 aroK shikimate kinase 93.0 0.078 1.7E-06 53.6 3.3 25 56-80 5-29 (172)
444 PRK13975 thymidylate kinase; P 93.0 0.091 2E-06 54.5 3.9 26 56-81 3-28 (196)
445 TIGR02236 recomb_radA DNA repa 93.0 0.38 8.2E-06 53.9 9.1 48 43-90 83-136 (310)
446 PF13481 AAA_25: AAA domain; P 93.0 0.49 1.1E-05 48.8 9.4 24 57-80 34-57 (193)
447 PRK14529 adenylate kinase; Pro 93.0 0.32 7E-06 51.0 7.9 91 58-154 3-95 (223)
448 COG5635 Predicted NTPase (NACH 93.0 0.47 1E-05 60.6 10.9 224 56-289 223-482 (824)
449 KOG0735 AAA+-type ATPase [Post 92.9 1.4 3E-05 52.6 13.3 151 32-206 667-848 (952)
450 PF08298 AAA_PrkA: PrkA AAA do 92.9 0.16 3.5E-06 56.1 5.6 51 32-82 61-115 (358)
451 PRK05342 clpX ATP-dependent pr 92.9 0.13 2.8E-06 59.4 5.2 52 32-83 71-136 (412)
452 PRK15453 phosphoribulokinase; 92.9 0.14 3.1E-06 54.9 5.1 29 53-81 3-31 (290)
453 COG0003 ArsA Predicted ATPase 92.9 0.18 3.9E-06 55.9 6.1 35 55-89 2-36 (322)
454 cd03282 ABC_MSH4_euk MutS4 hom 92.9 0.087 1.9E-06 54.8 3.4 24 54-77 28-51 (204)
455 COG1102 Cmk Cytidylate kinase 92.8 0.088 1.9E-06 50.8 3.1 25 57-81 2-26 (179)
456 PRK12597 F0F1 ATP synthase sub 92.8 0.32 6.9E-06 56.6 8.2 90 56-149 144-250 (461)
457 PRK10463 hydrogenase nickel in 92.8 0.2 4.4E-06 54.3 6.2 33 52-84 101-133 (290)
458 KOG1532 GTPase XAB1, interacts 92.8 0.088 1.9E-06 54.9 3.2 39 53-92 17-55 (366)
459 COG1936 Predicted nucleotide k 92.8 0.082 1.8E-06 51.8 2.9 20 57-76 2-21 (180)
460 PHA02774 E1; Provisional 92.8 0.34 7.4E-06 57.1 8.3 39 41-80 421-459 (613)
461 cd04121 Rab40 Rab40 subfamily. 92.7 0.096 2.1E-06 53.9 3.5 22 56-77 7-28 (189)
462 KOG0730 AAA+-type ATPase [Post 92.7 0.73 1.6E-05 54.5 10.9 172 32-231 184-386 (693)
463 PRK12339 2-phosphoglycerate ki 92.7 0.11 2.3E-06 53.7 3.8 25 55-79 3-27 (197)
464 COG2274 SunT ABC-type bacterio 92.7 0.21 4.6E-06 61.6 7.0 23 55-77 499-521 (709)
465 PRK14723 flhF flagellar biosyn 92.7 1.1 2.4E-05 55.3 12.9 26 55-80 185-210 (767)
466 cd03285 ABC_MSH2_euk MutS2 hom 92.7 0.057 1.2E-06 57.1 1.8 25 53-77 28-52 (222)
467 PRK05537 bifunctional sulfate 92.7 0.16 3.4E-06 61.4 5.8 51 31-81 368-418 (568)
468 PF00006 ATP-synt_ab: ATP synt 92.7 0.27 5.9E-06 51.3 6.8 88 56-149 16-118 (215)
469 TIGR03881 KaiC_arch_4 KaiC dom 92.6 0.37 8E-06 51.4 8.0 48 43-90 8-55 (229)
470 PF09848 DUF2075: Uncharacteri 92.6 0.35 7.5E-06 55.3 8.3 35 56-90 2-38 (352)
471 TIGR02533 type_II_gspE general 92.6 0.3 6.6E-06 57.8 7.9 88 55-154 242-329 (486)
472 PHA02244 ATPase-like protein 92.6 0.11 2.5E-06 57.9 4.0 47 32-82 96-146 (383)
473 PF13306 LRR_5: Leucine rich r 92.6 0.42 9.2E-06 45.4 7.7 80 588-670 8-88 (129)
474 PF00625 Guanylate_kin: Guanyl 92.6 0.13 2.8E-06 52.7 4.2 35 55-89 2-36 (183)
475 PF05970 PIF1: PIF1-like helic 92.6 0.17 3.7E-06 58.0 5.6 36 54-89 21-56 (364)
476 PRK13768 GTPase; Provisional 92.5 0.16 3.5E-06 54.9 5.0 27 56-82 3-29 (253)
477 TIGR03263 guanyl_kin guanylate 92.5 0.09 2E-06 53.7 3.0 24 56-79 2-25 (180)
478 PLN02318 phosphoribulokinase/u 92.5 0.14 3.1E-06 60.3 4.8 70 10-79 16-89 (656)
479 PRK14738 gmk guanylate kinase; 92.5 0.12 2.6E-06 54.1 3.9 29 50-78 8-36 (206)
480 TIGR02524 dot_icm_DotB Dot/Icm 92.5 0.15 3.1E-06 57.9 4.8 93 55-155 134-231 (358)
481 PRK03731 aroL shikimate kinase 92.5 0.11 2.3E-06 52.7 3.4 24 57-80 4-27 (171)
482 KOG0736 Peroxisome assembly fa 92.5 1.8 4E-05 52.0 13.7 95 32-148 672-776 (953)
483 COG1124 DppF ABC-type dipeptid 92.5 0.12 2.7E-06 53.5 3.8 22 56-77 34-55 (252)
484 PF06309 Torsin: Torsin; Inte 92.5 0.23 5E-06 46.4 5.2 46 33-78 26-76 (127)
485 PRK08506 replicative DNA helic 92.5 0.55 1.2E-05 55.7 9.8 53 55-114 192-244 (472)
486 COG0194 Gmk Guanylate kinase [ 92.4 0.14 3.1E-06 50.9 4.1 24 56-79 5-28 (191)
487 cd03217 ABC_FeS_Assembly ABC-t 92.4 0.21 4.5E-06 52.0 5.6 24 55-78 26-49 (200)
488 PRK09435 membrane ATPase/prote 92.4 0.29 6.2E-06 54.7 6.9 41 42-82 43-83 (332)
489 COG2019 AdkA Archaeal adenylat 92.4 0.13 2.9E-06 49.8 3.6 25 55-79 4-28 (189)
490 PRK14530 adenylate kinase; Pro 92.4 0.11 2.3E-06 54.9 3.4 23 57-79 5-27 (215)
491 COG0714 MoxR-like ATPases [Gen 92.4 0.19 4E-06 56.9 5.6 52 31-86 23-74 (329)
492 PRK14493 putative bifunctional 92.4 0.16 3.4E-06 55.3 4.7 34 56-90 2-35 (274)
493 cd03213 ABCG_EPDR ABCG transpo 92.4 0.42 9.2E-06 49.4 7.8 26 54-79 34-59 (194)
494 cd01983 Fer4_NifH The Fer4_Nif 92.3 0.17 3.6E-06 45.3 4.2 25 57-81 1-25 (99)
495 TIGR00554 panK_bact pantothena 92.3 0.19 4.1E-06 55.0 5.2 28 53-80 60-87 (290)
496 PRK04182 cytidylate kinase; Pr 92.2 0.12 2.5E-06 52.8 3.5 24 57-80 2-25 (180)
497 PRK04328 hypothetical protein; 92.2 0.36 7.7E-06 52.1 7.3 48 43-90 11-58 (249)
498 cd01135 V_A-ATPase_B V/A-type 92.2 0.7 1.5E-05 49.7 9.3 90 56-149 70-179 (276)
499 TIGR00750 lao LAO/AO transport 92.2 0.3 6.6E-06 54.3 6.9 41 42-82 21-61 (300)
500 TIGR01313 therm_gnt_kin carboh 92.2 0.096 2.1E-06 52.5 2.6 22 58-79 1-22 (163)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-106 Score=1043.74 Aligned_cols=911 Identities=34% Similarity=0.533 Sum_probs=712.8
Q ss_pred CCccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce
Q 001326 6 DPGIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG 85 (1099)
Q Consensus 6 ~~~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 85 (1099)
++|+++|++||++|++++..+++.+.+++|||+++++++.+++..+.+++++|+||||||+||||||+++|+++..+|+.
T Consensus 158 ~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 158 PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 57999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred eEEEEecccc--c---c----CC-CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHh
Q 001326 86 RCFVSNVRVE--S---E----NG-HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLA 155 (1099)
Q Consensus 86 ~~~~~~~~~~--~---~----~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~ 155 (1099)
.+|+.+.... . . .. .....++++++.++....... ......++++++++|+||||||||+..+|+.+.
T Consensus 238 ~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 238 SVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred EEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 9998653111 0 0 01 113456777777776543221 112467889999999999999999999999999
Q ss_pred cCCCCCCCCCeEEEEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 156 GGIDRFGPGSRIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 156 ~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
+...|+++||+||||||+++++..++++. +|+|+.|+++||++||+++||++..+++++.+++++|+++|+|+|||++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~--~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGIDH--IYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCCe--EEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 98889999999999999999998887776 9999999999999999999999888888899999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhcCCCchhHHHHhhcccCCCh-hhhhHHhhhccccccchHhHHHHHhcCCCc-hhhhHH
Q 001326 236 VLGSFFHQKSKPDWEKALEKINRISDPDIYDVLKISYNDLRP-EEKSIFLDIACFVVGEEKDFVTSILEDPNI-AHYGLS 313 (1099)
Q Consensus 236 ~lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~~~~~l~~~~~-~~~~l~ 313 (1099)
++|++|++++..+|+++++++++.++.+|.++|++||++|++ .+|.||+++||||.+.+.+.+..++..+++ +..+++
T Consensus 394 vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~ 473 (1153)
T PLN03210 394 VLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLK 473 (1153)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChH
Confidence 999999999999999999999998888999999999999976 599999999999999999999999988887 788999
Q ss_pred HHhhccceEEecCCeEEehHHHHHHHHHHHhhhcccCCCCcccccChHHHHHHHhcCCCcCceeEEEeccCcceeeeeCh
Q 001326 314 VLIERSLVTISKFNKIEMHDLLQEMGREIVRQECIKEPGKRSRLWNHEEILHVIKKNKGTDAIEGMFLNLSKIREIHLNS 393 (1099)
Q Consensus 314 ~L~~~sLi~~~~~~~~~mHdll~~~~~~i~~~~~~~~~~~~~~l~~~~~i~~vl~~~~~~~~~~~i~l~ls~~~~~~l~~ 393 (1099)
.|++++||++. .++++|||++|+||++++++++ .+|++++++|.++++++++.+++|++.+++|++|++......++.
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~ 551 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHE 551 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecH
Confidence 99999999997 6889999999999999999997 789999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCCCCCCceEEECCCCCccccccc
Q 001326 394 LVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEG 473 (1099)
Q Consensus 394 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~ 473 (1099)
.+|.+|++|++|+++.+.... ......+++.++..+|.+||+|+|.+|+++.+|..+.+.+|++|+|++|+++.+|.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc
Confidence 999999999999998775422 122456788999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEE
Q 001326 474 EKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKI 553 (1099)
Q Consensus 474 ~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 553 (1099)
+..+++|+.|+|++|..++.+|+++.+++|++|+|++|..+..+|..++++++|+.|++++|..+..+|..+.+++|+.|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EccCCcCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccc
Q 001326 554 DFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFP 633 (1099)
Q Consensus 554 ~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~ 633 (1099)
++++|..+..+|....+|+.|++.++.+..+|..+ .+++|+.|.+.++.... ++..+..+ .+
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l----------------~~ 771 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPL----------------TP 771 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhh-cccccccc----------------ch
Confidence 99999999999999999999999999999999866 57888888887755321 11111110 11
Q ss_pred hhhcCCCCCCEEEccCCC-CcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCC
Q 001326 634 EILEKMEPLEKLALDRSG-IKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKL 712 (1099)
Q Consensus 634 ~~l~~l~~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 712 (1099)
.....+++|+.|++++|. +..+|.+++++++|+.|++++|..++.+|..+ ++ ++|
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-----------------------~sL 827 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL-----------------------ESL 827 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-----------------------ccc
Confidence 112234677788887774 45788888888888888888887776665433 23 333
Q ss_pred cEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCC
Q 001326 713 RELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 713 ~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 792 (1099)
+.|++++|... ..+|. ..++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++
T Consensus 828 ~~L~Ls~c~~L---------------------~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 828 ESLDLSGCSRL---------------------RTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CEEECCCCCcc---------------------ccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC
Confidence 44444443211 01111 1245556666666666666666666666666666666666
Q ss_pred CCCCCC---CCCCeeecccCcCcccCCCCchhhHHhhHhHHhhhhcccCCCcccCCCceEEEcCCCCcchhHHHHHHHHH
Q 001326 793 SLPELP---LGLRHLEASNCKRLQSFPESPSCIEELHASLVEKLSDQAHGSVSLTAPGMLKFDNCLKLNERSVWAYFQQR 869 (1099)
Q Consensus 793 ~lp~l~---~sL~~L~i~~c~~L~~l~~~~~~L~~L~~~~~~~L~~~~~~~~~~~~l~~l~i~nC~~L~~~~~~~~~~~~ 869 (1099)
.+|..+ ++|+.|++.+|++|+.++..........+ +.... ..++....+.|.||.+|++.+. .++
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~------~~n~~--~~~p~~~~l~f~nC~~L~~~a~---l~~- 951 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMA------TDNIH--SKLPSTVCINFINCFNLDQEAL---LQQ- 951 (1153)
T ss_pred ccCcccccccCCCeeecCCCcccccccCCCCchhhhhh------ccccc--ccCCchhccccccccCCCchhh---hcc-
Confidence 666432 45555666667666655432111111111 00000 1233445578999999986552 111
Q ss_pred HHHHHHHhhhccccccccceeecCCCCCCCCcccCCCCcEEE-EEcCCCCCCCCcccceEEEEEeecCC-cc--ceeeE-
Q 001326 870 VHIALLSQFYEKEYEPCALSICLPGSEIPDGFRNQSLGSSVT-IQMPQHCCNKNFIGFALCAVIELEGD-HC--SEIYE- 944 (1099)
Q Consensus 870 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~iP~wf~~~~~g~~i~-i~lp~~~~~~~~~gf~~c~v~~~~~~-~~--~~~~~- 944 (1099)
......+++||.++|+||+||+.|++++ |++|+.|++..|.||++|+|+++... .. .....
T Consensus 952 --------------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~ 1017 (1153)
T PLN03210 952 --------------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQV 1017 (1153)
T ss_pred --------------cccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEE
Confidence 0112347899999999999999999998 99999999888999999999987621 10 00111
Q ss_pred EeeccC--CceEEEEE---eecccccCCCceEEcccccc-cCC----CCCCCeeEEEEEeeeccCCceEEEEeeeEEeee
Q 001326 945 VCVGYE--YGFYHTFI---LVDIISIDSNHVIVGFDQCW-DME----LPDADHHTDVSFDFFIDDSSFKVKCCGVTPVYA 1014 (1099)
Q Consensus 945 ~~~~~~--~~~~~~~~---~~~~~~~~sdh~~~~~~~~~-~~~----~~~~~~~~~~~f~~~~~~~~~~vk~cGv~lvy~ 1014 (1099)
.|. |. .+..+... ..-+....++|+|+....+. ... ....++++++.|.+......++||+|||+++|+
T Consensus 1018 ~c~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~ 1096 (1153)
T PLN03210 1018 CCR-FIDRLGNHFDSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSED 1096 (1153)
T ss_pred EEE-EECCCCCccccCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEecc
Confidence 111 11 11111000 00001123445543211111 000 011345667777765544447999999999997
Q ss_pred CCC
Q 001326 1015 NSK 1017 (1099)
Q Consensus 1015 ~~~ 1017 (1099)
.+.
T Consensus 1097 ~~~ 1099 (1153)
T PLN03210 1097 DSS 1099 (1153)
T ss_pred CCC
Confidence 765
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-60 Score=575.77 Aligned_cols=304 Identities=30% Similarity=0.377 Sum_probs=267.2
Q ss_pred ccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH---HhccCceeEEEEeccccccCCCCHHHHHHHHHH
Q 001326 35 VGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL---ISWEFEGRCFVSNVRVESENGHRLVYLRERVLS 111 (1099)
Q Consensus 35 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 111 (1099)
||.+..++++.+.|..++. ++|||+||||+||||||+.++|+ ++.+|+..+|+. +| ..++...++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VS-k~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VS-KEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ec-ccccHHhHHHHHHH
Confidence 9999999999999985543 99999999999999999999993 789999999997 44 68889999999999
Q ss_pred HHhcccccccC--CC-hhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccc-cCCCCcce
Q 001326 112 EIFEENIKIET--PC-LPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDN-FGVHSSNI 187 (1099)
Q Consensus 112 ~l~~~~~~~~~--~~-~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~-~~~~~~~~ 187 (1099)
.+...+..... .+ .+..+.+.|++||+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++++. .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--P 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--c
Confidence 88775443322 13 7888999999999999999999999999999999988899999999999999998 88766 8
Q ss_pred EecCCCCHHHHHHHHhhhhcCC-CCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCC-CHHHHHHHHHHHhcC-----C
Q 001326 188 YEVNGLEYDEARELFCNYAFKE-NHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQK-SKPDWEKALEKINRI-----S 260 (1099)
Q Consensus 188 ~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~-----~ 260 (1099)
++++.|+.+|||+||++.||.. ....+...++|++|+++|+|+|||++++|+.|+.| +..+|+++.+.+... +
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 9999999999999999999975 33445689999999999999999999999999986 667999999988665 1
Q ss_pred --CchhHHHHhhcccCCChhhhhHHhhhccccccch--HhHHHHHhcCCCc-------------hhhhHHHHhhccceEE
Q 001326 261 --DPDIYDVLKISYNDLRPEEKSIFLDIACFVVGEE--KDFVTSILEDPNI-------------AHYGLSVLIERSLVTI 323 (1099)
Q Consensus 261 --~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~l~~~~~-------------~~~~l~~L~~~sLi~~ 323 (1099)
.+.|..++++|||.|+++.|.||+|||.||+++. .+.++..|.++|| +...+++|++++|+..
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 3568899999999999999999999999999985 5679999999996 2334899999999988
Q ss_pred ecC----CeEEehHHHHHHHHHHHhhhc
Q 001326 324 SKF----NKIEMHDLLQEMGREIVRQEC 347 (1099)
Q Consensus 324 ~~~----~~~~mHdll~~~~~~i~~~~~ 347 (1099)
... ..+.|||++||||..++.+.+
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhcccc
Confidence 742 679999999999999998654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.3e-38 Score=405.92 Aligned_cols=455 Identities=21% Similarity=0.224 Sum_probs=242.5
Q ss_pred cCCCCcccccChHHHHHHHhcCCCcCceeEEEeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCC
Q 001326 349 KEPGKRSRLWNHEEILHVIKKNKGTDAIEGMFLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGL 428 (1099)
Q Consensus 349 ~~~~~~~~l~~~~~i~~vl~~~~~~~~~~~i~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~ 428 (1099)
.+|..+.+.|...+.+............+...+|++.+......+.+|.++++|+.|++++|.+. ..+|.++
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--------~~ip~~~ 113 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--------GPIPDDI 113 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--------CcCChHH
Confidence 34555566675433222222222222223455666665544445678899999999999988753 2345555
Q ss_pred ccCCCCeeEEEeecCCCCcCCCCCCCCCceEEECCCCCcc-cccccccccCCccEEeccCCCCCCcCCC-CCCCCCccEE
Q 001326 429 ECLPDGLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVE-QLWEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERI 506 (1099)
Q Consensus 429 ~~~~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L 506 (1099)
+....+|++|++++|.+....+...+++|++|+|++|.+. .+|..+..+++|++|+|++|.....+|. +..+++|++|
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 5455677777777777654333345667777777777765 4566667777777777777766555554 5667777777
Q ss_pred EeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCCC---CCccEEEecCcCCc
Q 001326 507 NLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHIS---GNVVELKLFNTPIE 582 (1099)
Q Consensus 507 ~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~~---~~L~~L~l~~~~i~ 582 (1099)
+|++|.....+|..++++++|++|+|++|.....+|..+ .+++|++|++++|.....+|... .+|+.|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 777766666666666677777777776666555566555 56666666666665444444322 34455555555543
Q ss_pred -ccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCc-ccCcccc
Q 001326 583 -EVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIK-ELPSSIE 660 (1099)
Q Consensus 583 -~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~ 660 (1099)
.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|...+..|..+..+++|+.|++++|.+. .+|..+.
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 34455555555555555555555455554555555555555555444444444444444444444444443 3344444
Q ss_pred cCCCCcEEEc------------------------cCCCCCCcccccccCCCCCceeecCCCCCc-cCCccccCCCCCcEE
Q 001326 661 NLEGLKELQL------------------------MCCSKLGSLPESLGNLKSLVVLDANRSAIL-QLPSSIADLNKLREL 715 (1099)
Q Consensus 661 ~l~~L~~L~L------------------------~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L 715 (1099)
.+++|+.|++ ++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 4444444444 444444444444455555555555555554 344455555555555
Q ss_pred EccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCC
Q 001326 716 CLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFE-SLPSSISQLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 716 ~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~ 792 (1099)
++++|.+....+ +..+++|+.|++++|.+....+.....++|+.|++++|+++ .+|..+..+++|+.|+|++|....
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 555555433222 23344444444444444321111112334444444444443 334444444444444444444444
Q ss_pred CCCCC---CCCCCeeecccCcC
Q 001326 793 SLPEL---PLGLRHLEASNCKR 811 (1099)
Q Consensus 793 ~lp~l---~~sL~~L~i~~c~~ 811 (1099)
.+|+. .++|+.|++++|.-
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred eCChHHcCccCCCEEECCCCcc
Confidence 44421 23444444444443
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-36 Score=336.42 Aligned_cols=265 Identities=32% Similarity=0.480 Sum_probs=211.2
Q ss_pred chhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH--HhccCceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 37 LSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL--ISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 37 r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+.++|+... .......++++++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~-----~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS-----KNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE-----S-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc-----ccccccccccccccccc
Confidence 789999999999876688999999999999999999999997 88999999998743 33445788888998887
Q ss_pred cccccc---cCCC-hhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccccCCCCcceEec
Q 001326 115 EENIKI---ETPC-LPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNFGVHSSNIYEV 190 (1099)
Q Consensus 115 ~~~~~~---~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~l 190 (1099)
...... .+.. ....+.+.|+++++||||||||+..+|+.+...++....|++||||||+..++..++.. ...|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 774432 1222 78889999999999999999999999999888777777899999999999998776542 228999
Q ss_pred CCCCHHHHHHHHhhhhcCCC-CCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCC-CHHHHHHHHHHHhcCC------Cc
Q 001326 191 NGLEYDEARELFCNYAFKEN-HCPDDLLALSKCVLKYANGNPLALTVLGSFFHQK-SKPDWEKALEKINRIS------DP 262 (1099)
Q Consensus 191 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~~------~~ 262 (1099)
++|+.+||++||++.++... ...+...+.+++|+++|+|+|||++++|++|+.+ +..+|+.+++++.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999998655 3345566789999999999999999999999553 6678999998876543 35
Q ss_pred hhHHHHhhcccCCChhhhhHHhhhccccccch--HhHHHHHhcCCCc
Q 001326 263 DIYDVLKISYNDLRPEEKSIFLDIACFVVGEE--KDFVTSILEDPNI 307 (1099)
Q Consensus 263 ~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~l~~~~~ 307 (1099)
.+..++.+||+.|+++.|+||++||+||.+.. .+.++++|.++|+
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HH
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCC
Confidence 68999999999999999999999999999864 7889999999887
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-34 Score=376.96 Aligned_cols=427 Identities=22% Similarity=0.270 Sum_probs=309.3
Q ss_pred eccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCC-cCCCCC-CCCCce
Q 001326 381 LNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLK-SLPSNF-DLENLI 458 (1099)
Q Consensus 381 l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~ 458 (1099)
++++.+......+..|..+++|+.|++++|.+.+ .+|..+.. .++|++|++++|.+. .+|..+ .+++|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--------~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--------KIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccc--------cCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 4455554433445567777777777777765421 22333322 345777777777765 455555 677777
Q ss_pred EEECCCCCcc-cccccccccCCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCC
Q 001326 459 ELDLPYSKVE-QLWEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCI 536 (1099)
Q Consensus 459 ~L~L~~n~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 536 (1099)
+|+|++|++. .+|..+..+++|++|++++|.....+|. +..+++|++|++++|.....+|..+.++++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 7777777776 4666677777777777777776655554 5777777777777777666777777777777777777776
Q ss_pred CcccCCCCC-CCCCCcEEEccCCcCCCCCCCC---CCCccEEEecCcCCc-ccCccccCCCCCcEEEeCCcccccccccc
Q 001326 537 SLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHI---SGNVVELKLFNTPIE-EVPSSIESLPNLKILNLGFCKRLKRVSTG 611 (1099)
Q Consensus 537 ~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~l~~~ 611 (1099)
....+|..+ .+++|+.|+++++.....+|.. ..+|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 666666655 6777777777777655555543 345677777777776 56777777777888888877777777777
Q ss_pred cccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCc-ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCc
Q 001326 612 ICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIK-ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLV 690 (1099)
Q Consensus 612 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 690 (1099)
++.+++|+.|++++|...+.+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|...+.+|..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 777777888888877777777777778888888888888776 5677777888888888888887777777777788888
Q ss_pred eeecCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCc-ccccccCCCCCCCEEEccCCC
Q 001326 691 VLDANRSAILQ-LPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGII-EISQDICCLSSLESLNLAENN 766 (1099)
Q Consensus 691 ~L~l~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~-~l~~~~~~l~sL~~L~L~~n~ 766 (1099)
.|++++|.+.. +|.. ...++|+.|++++|.+....+ +..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.
T Consensus 456 ~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 456 MLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred EEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 88888887764 3433 345788888888888654332 677888888888888887 477778888888888888888
Q ss_pred Cc-cccccccCCCCCCEEeecCCCCCCCCCCC---CCCCCeeecccCcCcccCCC
Q 001326 767 FE-SLPSSISQLSCLRRLCLRNCNMLQSLPEL---PLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 767 l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~c~~L~~l~~ 817 (1099)
++ .+|..+..+++|+.|+|++|+....+|.. ..+|+.|++++|+-...+|.
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 87 67788888888888888888888788853 36788888888887777775
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-31 Score=293.72 Aligned_cols=349 Identities=19% Similarity=0.312 Sum_probs=251.0
Q ss_pred ecCCCCccCCCCeeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCC--cCCCCCC
Q 001326 423 HLDDGLECLPDGLRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLT--RIPKQSE 499 (1099)
Q Consensus 423 ~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~--~~~~~~~ 499 (1099)
.+|.+.... ..+++|.+....+..+|... .+.+|++|.+++|++.++...+..++.||.+++.+|+... ..+++..
T Consensus 23 ~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 23 RFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred cCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 344443333 23666666666666666555 5566666666666666555555566666666665554321 2333555
Q ss_pred CCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCC--CCCCCcEEEccCCcCCCCCCCCCCCccEEEec
Q 001326 500 APNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI--HFRSPVKIDFSGCVNLTEFPHISGNVVELKLF 577 (1099)
Q Consensus 500 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~ 577 (1099)
+..|..|+|++|+ +.+.|..+...+++-.|+|++| .+..+|... ++. .|-.|+|+
T Consensus 102 l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLt---------------------DLLfLDLS 158 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLT---------------------DLLFLDLS 158 (1255)
T ss_pred cccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhH---------------------hHhhhccc
Confidence 5555555555544 4455555555555555555554 334444322 222 23456667
Q ss_pred CcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCC-CCccchhhcCCCCCCEEEccCCCCcccC
Q 001326 578 NTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSD-LESFPEILEKMEPLEKLALDRSGIKELP 656 (1099)
Q Consensus 578 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~-~~~~~~~l~~l~~L~~L~L~~~~l~~lp 656 (1099)
+|.++.+|+.+..+.+|++|.|++|.+...--..+..+++|++|.+++.+. +..+|.++..+.+|..++++.|++..+|
T Consensus 159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 788888999899999999999999886554444455677788888887654 4568888899999999999999999999
Q ss_pred cccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCC--CCCCC-CCCCCC
Q 001326 657 SSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRG--FALPP-LSTLSS 733 (1099)
Q Consensus 657 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~--~~l~~-l~~l~~ 733 (1099)
..+.++++|+.|+|++|.++. +....+.-.+|++|+++.|.++.+|+.+..+++|+.|.+.+|++ ..+|+ ++.+..
T Consensus 239 ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 999999999999999987653 33345566788999999999999999999999999999988884 45666 888889
Q ss_pred CCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCC
Q 001326 734 LRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPE 796 (1099)
Q Consensus 734 L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 796 (1099)
|+.+..++|.+.-+|++++.|..|+.|.|+.|.+.++|+.+.-|+-|+.|++.+|++|..-|.
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999888889999999999999999999999999999999999999999998876663
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2e-31 Score=291.80 Aligned_cols=361 Identities=24% Similarity=0.331 Sum_probs=318.7
Q ss_pred eeEEEeecCCCC--cCCCCC-CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCC
Q 001326 435 LRYLHWHECPLK--SLPSNF-DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNC 511 (1099)
Q Consensus 435 Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~ 511 (1099)
.|-.++++|.++ .+|.+. +++.++-|.|..+++..+|+.+..+.+|++|.++||+..+....++.++.|+.+++..|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 566788888876 788888 89999999999999999999999999999999999998888888999999999999987
Q ss_pred CCC-CccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcc-cc
Q 001326 512 KNL-LYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSS-IE 589 (1099)
Q Consensus 512 ~~l-~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~-i~ 589 (1099)
+.- .-+|..|.++..|..|+|++| .+++.|... +...++-.|+|++|.|+.+|.. +-
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~L--------------------E~AKn~iVLNLS~N~IetIPn~lfi 147 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNL--------------------EYAKNSIVLNLSYNNIETIPNSLFI 147 (1255)
T ss_pred ccccCCCCchhcccccceeeecchh-hhhhcchhh--------------------hhhcCcEEEEcccCccccCCchHHH
Confidence 643 458999999999999999997 555565543 1123456778888999999976 46
Q ss_pred CCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCc--ccCcccccCCCCcE
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIK--ELPSSIENLEGLKE 667 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~ 667 (1099)
+++.|-.|||++|+ +..+|..+..+.+|++|.|++|+....-...+..|++|+.|.+++++-+ .+|.++..+.+|..
T Consensus 148 nLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred hhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 89999999999987 5678888999999999999999987766666778899999999999765 89999999999999
Q ss_pred EEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCc-
Q 001326 668 LQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGII- 745 (1099)
Q Consensus 668 L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~- 745 (1099)
++++.|+ +..+|+.+-++++|+.|++++|.|+++....+...+|++|+++.|+++.+|. +..++.|+.|.+.+|.+.
T Consensus 227 vDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 227 VDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred ccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc
Confidence 9999876 6778999999999999999999999998888889999999999999999998 889999999999999988
Q ss_pred -ccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCC---CCCCCCeeecccCcCcccCCCCc
Q 001326 746 -EISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPE---LPLGLRHLEASNCKRLQSFPESP 819 (1099)
Q Consensus 746 -~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~c~~L~~l~~~~ 819 (1099)
.+|++++.+..|+.+..++|+++-+|+++..|+.|+.|.|++ +.|..+|+ +++.|+.|++.++|+|.--|...
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 699999999999999999999999999999999999999987 56677886 56899999999999998777643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-29 Score=276.66 Aligned_cols=356 Identities=22% Similarity=0.220 Sum_probs=273.7
Q ss_pred CCCCeeEEEeecCCCCcCCCCC--CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCC-CCCCCCccEEE
Q 001326 431 LPDGLRYLHWHECPLKSLPSNF--DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERIN 507 (1099)
Q Consensus 431 ~~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~ 507 (1099)
+|..-+.|++++|.+..+...+ ++++|+.++|.+|.++.+|.......+|+.|+|.+|.+...-.. ++.++.|+.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3445667777777777666543 77777777777777777777777777777777777754333222 46667777777
Q ss_pred eeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcc
Q 001326 508 LWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSS 587 (1099)
Q Consensus 508 L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~ 587 (1099)
|+.|.+...--+++..-.++++|+|++|.... +.. ..|. ...+|..|.|++|.++.+|.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~------------------~~F~-~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LET------------------GHFD-SLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccc-ccc------------------cccc-ccchheeeecccCcccccCHH
Confidence 77765444333455555667777777652211 110 0111 122566777888899999865
Q ss_pred -ccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCCCC
Q 001326 588 -IESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLEGL 665 (1099)
Q Consensus 588 -i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L 665 (1099)
|.++++|+.|+|..|.+...-.-.|.++++|+.|.+..|.....-...|..+.++++|+|..|++..+.. |+.+++.|
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 5569999999999998665545678999999999999999888888889999999999999999997754 78899999
Q ss_pred cEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCc-cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCC
Q 001326 666 KELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS-SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGC 742 (1099)
Q Consensus 666 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~ 742 (1099)
+.|++++|.+...-+..+...++|++|+|++|.++.+++ ++..+..|++|+|+.|.+..+.. +..+++|++|+|++|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 999999999988888889999999999999999999964 78889999999999999877765 788999999999999
Q ss_pred CCccc----ccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCCCCCCC--CCCCeeec
Q 001326 743 GIIEI----SQDICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCNMLQSLPELP--LGLRHLEA 806 (1099)
Q Consensus 743 ~l~~l----~~~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~l~--~sL~~L~i 806 (1099)
.+... ...+.++++|+.|.|.||++.++|. .+.+|++|+.|+|.+|..-..-|+.+ ..|++|.+
T Consensus 376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 98842 2237889999999999999999984 68899999999999976655445444 24555544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=4.1e-28 Score=265.26 Aligned_cols=368 Identities=20% Similarity=0.189 Sum_probs=281.9
Q ss_pred EEEeccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCC--CCC
Q 001326 378 GMFLNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNF--DLE 455 (1099)
Q Consensus 378 ~i~l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~--~l~ 455 (1099)
.-.||+++++.-+++...|.+++||+.+++.+|.++.+|. +...+.+|+.|++.+|.|.++.+.- .++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~----------f~~~sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPR----------FGHESGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccc----------ccccccceeEEeeeccccccccHHHHHhHh
Confidence 3458888888888889999999999999998887765543 2234456888999998888877655 678
Q ss_pred CceEEECCCCCcccccccc-cccCCccEEeccCCCCCCcCC-CCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcC
Q 001326 456 NLIELDLPYSKVEQLWEGE-KEAFKLKSIDLHQSHNLTRIP-KQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLR 533 (1099)
Q Consensus 456 ~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~~-~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 533 (1099)
.|+.|||+.|.|..++... ..-.++++|+|++|.+.+.-. .|..+.+|..|.|+.|.....-+..|.+|++|+.|+|.
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 8889999999888887654 344688888888887655433 37777888888888888666666677788888888888
Q ss_pred CCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCcc-ccCCCCCcEEEeCCccccccccccc
Q 001326 534 DCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPSS-IESLPNLKILNLGFCKRLKRVSTGI 612 (1099)
Q Consensus 534 ~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~l~~~l 612 (1099)
.|.. +... -+.+. ...+|+.|.+..|.|..+.+. |..+.++++|+|+.|.....-..++
T Consensus 230 rN~i-rive---------~ltFq----------gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 230 RNRI-RIVE---------GLTFQ----------GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ccce-eeeh---------hhhhc----------CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 7632 1110 01111 122455666677788877654 5678899999999998877777778
Q ss_pred ccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCCCCcEEEccCCCCCCcccccccCCCCCce
Q 001326 613 CKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLEGLKELQLMCCSKLGSLPESLGNLKSLVV 691 (1099)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 691 (1099)
.++++|+.|+++.|.+...-++..+..++|+.|+|++|+++++++ ++..+..|++|+|++|++...--..|..+.+|++
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 899999999999999888888888899999999999999998865 6788899999999999877666667888999999
Q ss_pred eecCCCCCc----cCCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccc-ccccCCCCCCCEEEccC
Q 001326 692 LDANRSAIL----QLPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEI-SQDICCLSSLESLNLAE 764 (1099)
Q Consensus 692 L~l~~~~i~----~lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l-~~~~~~l~sL~~L~L~~ 764 (1099)
|||++|.+. .-...+..+++|+.|.+.||++..++. +.++++|++|+|.+|.+..+ |..|..+ .|++|.+..
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 999999876 224456778999999999999888876 88899999999999988875 4456666 788776643
Q ss_pred ------CCCccccccccC
Q 001326 765 ------NNFESLPSSISQ 776 (1099)
Q Consensus 765 ------n~l~~lp~~l~~ 776 (1099)
|.+.-++.|+..
T Consensus 449 ssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 449 SSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred cceEEeccHHHHHHHHHh
Confidence 555666666543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=2.3e-30 Score=271.43 Aligned_cols=369 Identities=26% Similarity=0.290 Sum_probs=193.1
Q ss_pred eeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCC
Q 001326 435 LRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKN 513 (1099)
Q Consensus 435 Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 513 (1099)
|.+|.+++|.+..+|+.+ .+..++.|+.++|++.++|+.+..+..|+.|+.++|......++++.+..|+.|+..+|.
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~- 148 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ- 148 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-
Confidence 555555555555555555 455555566666666666666655566666666665555555555555555555555544
Q ss_pred CCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCC---ccEEEecCcCCcccCccccC
Q 001326 514 LLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGN---VVELKLFNTPIEEVPSSIES 590 (1099)
Q Consensus 514 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~---L~~L~l~~~~i~~lp~~i~~ 590 (1099)
...+|.+++++.+|..|++.+|......|..+.+..|++++... ..++.+|...+. +..|++..|++..+| .|..
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~g 226 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPG 226 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCc
Confidence 34455555555555555555553333333333555555555433 234444444333 233444555555555 3555
Q ss_pred CCCCcEEEeCCcccccccccccc-cCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEE
Q 001326 591 LPNLKILNLGFCKRLKRVSTGIC-KLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQ 669 (1099)
Q Consensus 591 l~~L~~L~L~~~~~~~~l~~~l~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 669 (1099)
+..|+.|.++.|.+ ..+|...+ .+++|.+|++.+|+ ++..|+.+..+.+|++||+++|.++.+|.+++++ .|+.|-
T Consensus 227 cs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 227 CSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred cHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 55555555554432 23333322 45555555555543 2344555555555555555555555555555555 555555
Q ss_pred ccCCCCCCc-------------------------------------cc-cc---ccCCCCCc------------------
Q 001326 670 LMCCSKLGS-------------------------------------LP-ES---LGNLKSLV------------------ 690 (1099)
Q Consensus 670 L~~~~~l~~-------------------------------------lp-~~---l~~l~~L~------------------ 690 (1099)
+.||+.-+. .| .. ...+.+.+
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 555541100 00 00 00011111
Q ss_pred --------eeecCCCCCc------------------------cCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEE
Q 001326 691 --------VLDANRSAIL------------------------QLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTL 737 (1099)
Q Consensus 691 --------~L~l~~~~i~------------------------~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L 737 (1099)
..+++.|.+. -+|..++.+++|..|++++|.+..+|. ++.+..|+.|
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTL 463 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhhee
Confidence 2222233222 223344567777888888877777775 6677778888
Q ss_pred eccCCCCcccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCCCCC---CCCCCCeeecccCc
Q 001326 738 TLSGCGIIEISQDICCLSSLESLNLAENNFESLPSS-ISQLSCLRRLCLRNCNMLQSLPE---LPLGLRHLEASNCK 810 (1099)
Q Consensus 738 ~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~c~ 810 (1099)
+|+.|.+..+|..+..+.-|+.+-.++|++..++.. +.++.+|..||+.+| .++++|. ...+|++|+++|+|
T Consensus 464 nlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 464 NLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 888777776666555555555555555666655543 556666666666553 3444442 23555566665554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=4.9e-28 Score=254.09 Aligned_cols=375 Identities=24% Similarity=0.286 Sum_probs=302.6
Q ss_pred eeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCC
Q 001326 435 LRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKN 513 (1099)
Q Consensus 435 Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~ 513 (1099)
|..|.+++|.+..+..+. ++..|.+|++.+|++.++|..++.+..++.++.++|+.....+.+..+.+|..|+.++|.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~- 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE- 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-
Confidence 677788888888777766 899999999999999999999999999999999999877777778999999999999976
Q ss_pred CCccCccccCCCCCCEEEcCCCCCcccCCCCC-CCCCCcEEEccCCcCCCCCCCC---CCCccEEEecCcCCcccCcccc
Q 001326 514 LLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI-HFRSPVKIDFSGCVNLTEFPHI---SGNVVELKLFNTPIEEVPSSIE 589 (1099)
Q Consensus 514 l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~~~~l~~l~~~---~~~L~~L~l~~~~i~~lp~~i~ 589 (1099)
..++|++++.+..|..|+..+| .+..+|..+ .+.+|..+++.+. .++.+|.. +..+++|+...|.++.+|..++
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 6778999999999999999886 566666666 7888888888885 45555532 4567899999999999999999
Q ss_pred CCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEE
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQ 669 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 669 (1099)
.+.+|..|++..|++. .+| .|.++..|++|++..|.....-.+....+++|..||+..|+++++|..++-+.+|+.|+
T Consensus 204 ~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD 281 (565)
T ss_pred chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence 9999999999999854 456 79999999999998877655444556699999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccCCCCCceeecCCCCCccCCc--------------------------------------c-c---c
Q 001326 670 LMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPS--------------------------------------S-I---A 707 (1099)
Q Consensus 670 L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--------------------------------------~-~---~ 707 (1099)
+++|.+ ..+|..++++ +|+.|-+.+|.+..+-. + + .
T Consensus 282 lSNN~i-s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~ 359 (565)
T KOG0472|consen 282 LSNNDI-SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY 359 (565)
T ss_pred ccCCcc-ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh
Confidence 999885 5678889999 99999998886632100 0 0 0
Q ss_pred CCCCC--------------------------cEEEccCCCCCCCCC-------------------------CCCCCCCCE
Q 001326 708 DLNKL--------------------------RELCLSGCRGFALPP-------------------------LSTLSSLRT 736 (1099)
Q Consensus 708 ~l~~L--------------------------~~L~L~~~~~~~l~~-------------------------l~~l~~L~~ 736 (1099)
...+. ...++++|++..+|. +..+++|..
T Consensus 360 ~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 01122 344455554322221 467889999
Q ss_pred EeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCC----CCCCCCeeecccCcCc
Q 001326 737 LTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPE----LPLGLRHLEASNCKRL 812 (1099)
Q Consensus 737 L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~c~~L 812 (1099)
|++++|-+.++|.+++.+..|+.|+++.|+|..+|..+..+..|+.+-.++ +.+++++. ...+|..|++.++ .+
T Consensus 440 L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dl 517 (565)
T KOG0472|consen 440 LDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DL 517 (565)
T ss_pred eecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-ch
Confidence 999999999999999999999999999999999999888777777666555 67777774 3467777887664 46
Q ss_pred ccCCCC
Q 001326 813 QSFPES 818 (1099)
Q Consensus 813 ~~l~~~ 818 (1099)
+.+|..
T Consensus 518 q~IPp~ 523 (565)
T KOG0472|consen 518 QQIPPI 523 (565)
T ss_pred hhCChh
Confidence 666643
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-27 Score=272.35 Aligned_cols=417 Identities=23% Similarity=0.233 Sum_probs=297.2
Q ss_pred eccCcceeeeeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCC-CCCCceE
Q 001326 381 LNLSKIREIHLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNF-DLENLIE 459 (1099)
Q Consensus 381 l~ls~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~ 459 (1099)
++++.+-.+..+.++.++.-+|+.|++++|.++.+|. .+.. ..+|+.|.++.|.+.+.|... ++.+|++
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~---------~it~-l~~L~~ln~s~n~i~~vp~s~~~~~~l~~ 95 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPI---------QITL-LSHLRQLNLSRNYIRSVPSSCSNMRNLQY 95 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccccCCc---------hhhh-HHHHhhcccchhhHhhCchhhhhhhcchh
Confidence 4444444444445566666679999999887754443 2222 245888888888888888666 7888888
Q ss_pred EECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCc-------------------cEEEeeCCCCCCccCcc
Q 001326 460 LDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNL-------------------ERINLWNCKNLLYIPSH 520 (1099)
Q Consensus 460 L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L-------------------~~L~L~~~~~l~~lp~~ 520 (1099)
|.|.+|.+..+|.++..+.+|++|+++.|.+....+-+..+..+ +.+++..+.....++..
T Consensus 96 lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 96 LNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred heeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc
Confidence 88888888888888888888888888888765544433444434 44444444444455555
Q ss_pred ccCCCCCCEEEcCCCCCc----------ccCCC--------CCCCCCCcEEEccCCcCCCCCCC-CCCCccEEEecCcCC
Q 001326 521 IQNFNNLSMLSLRDCISL----------SCFPR--------NIHFRSPVKIDFSGCVNLTEFPH-ISGNVVELKLFNTPI 581 (1099)
Q Consensus 521 i~~l~~L~~L~L~~~~~l----------~~lp~--------~~~l~~L~~L~l~~~~~l~~l~~-~~~~L~~L~l~~~~i 581 (1099)
+..+.+ .|+|++|... ..+-. .+..++|+.|..+.|...+..+. ...+++.++++++.+
T Consensus 176 i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 176 IYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL 253 (1081)
T ss_pred hhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh
Confidence 555555 5777766443 11100 00234555555555555544443 345789999999999
Q ss_pred cccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCccccc
Q 001326 582 EEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIEN 661 (1099)
Q Consensus 582 ~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~ 661 (1099)
..+|+|++.+.+|+.|+..+|.+ ..+|..+....+|+.|.+..|. ++.+|...+.+++|++|+|..|++..+|..+..
T Consensus 254 ~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 254 SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 99999999999999999998887 6677778888888888887765 456777788899999999999999988875432
Q ss_pred C--CCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc-CCccccCCCCCcEEEccCCCCCCCCC--CCCCCCCCE
Q 001326 662 L--EGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ-LPSSIADLNKLRELCLSGCRGFALPP--LSTLSSLRT 736 (1099)
Q Consensus 662 l--~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~ 736 (1099)
- .+|..|+.+.+.........=..++.|+.|++.+|.++. .-..+.++++|+.|+|++|.+..+|. +.+++.|++
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 2 225666666555333222222356678888888888883 44567788899999999998888887 788889999
Q ss_pred EeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCC-CCCC-CC-CCCCeeecccCcCc
Q 001326 737 LTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQ-SLPE-LP-LGLRHLEASNCKRL 812 (1099)
Q Consensus 737 L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~-~lp~-l~-~sL~~L~i~~c~~L 812 (1099)
|+||||.++.+|..+..++.|++|...+|.+..+| .+..++.|+.+|++.|+.-. .+|+ .| +.|++|++++++.+
T Consensus 412 L~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 412 LNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 99999999999988888999999999999999998 78889999999998765432 3343 45 78999999988864
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.9e-23 Score=271.56 Aligned_cols=334 Identities=28% Similarity=0.433 Sum_probs=261.6
Q ss_pred CCCCCCccEEEeeCCC------CCCccCccccCCC-CCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCC
Q 001326 497 QSEAPNLERINLWNCK------NLLYIPSHIQNFN-NLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISG 569 (1099)
Q Consensus 497 ~~~l~~L~~L~L~~~~------~l~~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~ 569 (1099)
|.++++|+.|.+..+. ....+|..+..++ +|+.|.+.++ .++.+|..+.+.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~--------------------- 611 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPE--------------------- 611 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCcc---------------------
Confidence 4556666666664332 1123455555543 4777777664 445555544433
Q ss_pred CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccC
Q 001326 570 NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDR 649 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 649 (1099)
+|..|++.++.+..+|..+..+++|+.|+|++|..+..+|. ++.+++|+.|++++|..+..+|..+..+++|+.|++++
T Consensus 612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 44555555566777777788899999999999888887775 78899999999999999999999999999999999998
Q ss_pred C-CCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCC---
Q 001326 650 S-GIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFAL--- 725 (1099)
Q Consensus 650 ~-~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l--- 725 (1099)
| .++.+|..+ ++++|+.|++++|..++.+|.. .++|+.|++++|.+..+|..+ .+++|++|.+.++....+
T Consensus 691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhcccc
Confidence 6 677888766 7899999999999988888754 468899999999999998876 689999999988653222
Q ss_pred ----CC--CCCCCCCCEEeccCCCCc-ccccccCCCCCCCEEEccCC-CCccccccccCCCCCCEEeecCCCCCCCCCCC
Q 001326 726 ----PP--LSTLSSLRTLTLSGCGII-EISQDICCLSSLESLNLAEN-NFESLPSSISQLSCLRRLCLRNCNMLQSLPEL 797 (1099)
Q Consensus 726 ----~~--l~~l~~L~~L~Ls~~~l~-~l~~~~~~l~sL~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 797 (1099)
++ ...+++|+.|+|++|... ++|..++++++|+.|+|++| ++..+|..+ .+++|+.|++++|..++.+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 11 233579999999999654 69999999999999999998 578899776 7999999999999999999999
Q ss_pred CCCCCeeecccCcCcccCCCC---chhhHHhhHhHHhhhhcccCCCcccCCCceEEEcCCCCcchh
Q 001326 798 PLGLRHLEASNCKRLQSFPES---PSCIEELHASLVEKLSDQAHGSVSLTAPGMLKFDNCLKLNER 860 (1099)
Q Consensus 798 ~~sL~~L~i~~c~~L~~l~~~---~~~L~~L~~~~~~~L~~~~~~~~~~~~l~~l~i~nC~~L~~~ 860 (1099)
+.+|+.|+++++ .++.+|.. .++|+.|++.+|.+|..+......++.++.+.|.+|++|...
T Consensus 845 ~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 845 STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999999999885 56666643 346777888899999888777778888999999999999743
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-26 Score=264.80 Aligned_cols=384 Identities=23% Similarity=0.231 Sum_probs=261.7
Q ss_pred CCeeEEEeecCCCCcCCCCC-CCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCC
Q 001326 433 DGLRYLHWHECPLKSLPSNF-DLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNC 511 (1099)
Q Consensus 433 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~ 511 (1099)
-+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|..+|....++.+|++|+|.+|........++.+.+|++|++++|
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 34899999999999999877 78899999999999999998888889999999988864444445788899999999987
Q ss_pred CCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccE-EEecCcCCcccCccccC
Q 001326 512 KNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVE-LKLFNTPIEEVPSSIES 590 (1099)
Q Consensus 512 ~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~-L~l~~~~i~~lp~~i~~ 590 (1099)
. ...+|..+..+..+..+..++|..+..++... ++.+++........++....+++. |+|..|.+. ...+..
T Consensus 125 ~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~--~~dls~ 197 (1081)
T KOG0618|consen 125 H-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME--VLDLSN 197 (1081)
T ss_pred c-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc----chhhhhhhhhcccchhcchhhhheeeecccchhh--hhhhhh
Confidence 6 45677778888888888888874444444322 566666666555666666666666 777777776 223445
Q ss_pred CCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEc
Q 001326 591 LPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQL 670 (1099)
Q Consensus 591 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 670 (1099)
+.+|+.|....|.+... .-..++|+.|+.+.|......+. ....+|++++++.|+++.+|+|++.+.+|+.|+.
T Consensus 198 ~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNA 271 (1081)
T ss_pred ccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecc
Confidence 55555555555443221 11234566666666655532221 2234566666666666666666666666666666
Q ss_pred cCCCC----------------------CCcccccccCCCCCceeecCCCCCccCCcccc---------------------
Q 001326 671 MCCSK----------------------LGSLPESLGNLKSLVVLDANRSAILQLPSSIA--------------------- 707 (1099)
Q Consensus 671 ~~~~~----------------------l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~--------------------- 707 (1099)
.+|.+ +.-+|.....+++|++|++..|.+..+|..+-
T Consensus 272 n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 272 NHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred cchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 55553 22344445556667777777766666554221
Q ss_pred -----CCCCCcEEEccCCCCC--CCCCCCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCCccccccccCCCC
Q 001326 708 -----DLNKLRELCLSGCRGF--ALPPLSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNFESLPSSISQLSC 779 (1099)
Q Consensus 708 -----~l~~L~~L~L~~~~~~--~l~~l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l~~lp~~l~~l~~ 779 (1099)
.++.|+.|.+.+|.+. .+|.+.++.+|+.|+|++|.+.++|.. +.+++.|+.|+||||.++.+|..+..++.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 1233455555555533 355677888999999999999998876 78899999999999999999999999999
Q ss_pred CCEEeecCCCCCCCCCCC--CCCCCeeecccCcCcccCC---CCc-hhhHHhhHhHHh
Q 001326 780 LRRLCLRNCNMLQSLPEL--PLGLRHLEASNCKRLQSFP---ESP-SCIEELHASLVE 831 (1099)
Q Consensus 780 L~~L~L~~c~~l~~lp~l--~~sL~~L~i~~c~~L~~l~---~~~-~~L~~L~~~~~~ 831 (1099)
|++|...+ +.+.++|++ .+.|+.+|++ |..|..+- ..| ++|+.|++++-.
T Consensus 432 L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 99998877 566778864 4788899986 34443322 244 677777766544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.1e-18 Score=210.10 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=40.5
Q ss_pred CeeEEEeecCCCCcCCCCCCCCCceEEECCCCCcccccccccccCCccEEeccCCCCCCcCCCCCCCCCccEEEeeCCC
Q 001326 434 GLRYLHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGEKEAFKLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCK 512 (1099)
Q Consensus 434 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~ 512 (1099)
+-..|+++++.++++|..+. .+|+.|++++|+++.+|.. +++|++|++++|++. .+|.+ .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc
Confidence 34566677777777776552 3677777777777766642 345666666665422 33321 2345555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=5.8e-18 Score=203.97 Aligned_cols=261 Identities=23% Similarity=0.275 Sum_probs=151.5
Q ss_pred CccEEeccCCCCCCcCCCCCCCCCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCC
Q 001326 479 KLKSIDLHQSHNLTRIPKQSEAPNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGC 558 (1099)
Q Consensus 479 ~L~~L~Ls~~~~l~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~ 558 (1099)
+-..|+++.+.+. .+|.. -.++|+.|++.+|. +..+|.. +++|++|++++| .++.+|.. ..+|+.|+++++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~-l~~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDC-LPAHITTLVIPDNN-LTSLPAL---PPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCC-cCCcc-hhcCCCEEEccCCc-CCCCCCC---CCCCcEEEecCC-ccCcccCc--ccccceeeccCC
Confidence 3556777777543 45541 12467777777765 3445542 466777777665 44444432 245555555543
Q ss_pred cCCCCCCCCCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcC
Q 001326 559 VNLTEFPHISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEK 638 (1099)
Q Consensus 559 ~~l~~l~~~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 638 (1099)
. ++.+|....+|+.|++++|.+..+|.. +++|+.|++++|. ... +|. .
T Consensus 273 ~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~------------------------L~~-Lp~---l 320 (788)
T PRK15387 273 P-LTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ------------------------LAS-LPA---L 320 (788)
T ss_pred c-hhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCc------------------------ccc-CCC---C
Confidence 2 444444444455555555555544432 2344444444443 322 222 1
Q ss_pred CCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEcc
Q 001326 639 MEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLS 718 (1099)
Q Consensus 639 l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 718 (1099)
..+|+.|++++|.++.+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+..+|.. ..+|+.|+++
T Consensus 321 p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVS 390 (788)
T ss_pred cccccccccccCcccccccc---ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEec
Confidence 22455566666666655542 135666666666544 23432 24566667777777766653 2467777777
Q ss_pred CCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCC
Q 001326 719 GCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLP 795 (1099)
Q Consensus 719 ~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 795 (1099)
+|.+..+|.. .++|+.|++++|.+..+|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|+.-...|
T Consensus 391 ~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 391 GNRLTSLPVL--PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCcccCCCCc--ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 7777766653 35778888888887777753 346777888888888888878888888888888877654443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=4e-18 Score=180.02 Aligned_cols=245 Identities=20% Similarity=0.240 Sum_probs=161.6
Q ss_pred ccCCCCeeEEEeecCCCCcCCCCC--CCCCceEEECCCCCcccc-cccccccCCccEEeccCCCCCCcCCC--CCCCCCc
Q 001326 429 ECLPDGLRYLHWHECPLKSLPSNF--DLENLIELDLPYSKVEQL-WEGEKEAFKLKSIDLHQSHNLTRIPK--QSEAPNL 503 (1099)
Q Consensus 429 ~~~~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~~~--~~~l~~L 503 (1099)
..+|.+-..+.|..|.|++||+.. .+++|+.|||++|+|+.+ |..++.+..|..|-+-+++.++.+|. |.++..|
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 345677888999999999999776 799999999999999987 56778999988888888666777776 7899999
Q ss_pred cEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCC--CCCCCcEEEccCCcCCC------------CCCCCCC
Q 001326 504 ERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNI--HFRSPVKIDFSGCVNLT------------EFPHISG 569 (1099)
Q Consensus 504 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~~~~l~------------~l~~~~~ 569 (1099)
+.|.+.-|...-.....+..+++|..|.+.+| .+..++... .+..++++.+...+.+. ..|...+
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 99999888776667778889999999999886 445555422 56666666655433111 1111111
Q ss_pred Cc---cEEEecCcCC--------------------------cccC-ccccCCCCCcEEEeCCcccccccccccccCcccc
Q 001326 570 NV---VELKLFNTPI--------------------------EEVP-SSIESLPNLKILNLGFCKRLKRVSTGICKLKYLR 619 (1099)
Q Consensus 570 ~L---~~L~l~~~~i--------------------------~~lp-~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~ 619 (1099)
.. ....+.+..+ ...| ..|..+++|++|+|++|++...-+.+|.++..++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 00 0000111111 1111 1245566666666666666666666666666666
Q ss_pred EEeccCCCCCCccchhhcCCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCC
Q 001326 620 CLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCS 674 (1099)
Q Consensus 620 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~ 674 (1099)
+|.|..|+....-...|.++..|+.|+|.+|+|+.+ |..|..+.+|.+|++-.|+
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 666666665555555666666666666666666643 4455666666666665554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=2.7e-16 Score=191.16 Aligned_cols=246 Identities=22% Similarity=0.345 Sum_probs=131.4
Q ss_pred CCccEEEeeCCCCCCccCccccCCCCCCEEEcCCCCCcccCCCCCCCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcC
Q 001326 501 PNLERINLWNCKNLLYIPSHIQNFNNLSMLSLRDCISLSCFPRNIHFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTP 580 (1099)
Q Consensus 501 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~ 580 (1099)
.+...|+++++. +..+|..+. ++|+.|+|++| .+..+|..+. .+|+.|++++ |.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~-~nL~~L~Ls~---------------------N~ 231 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNN-ELKSLPENLQ-GNIKTLYANS---------------------NQ 231 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCC-CCCcCChhhc-cCCCEEECCC---------------------Cc
Confidence 356677887754 455676553 46788888776 4445554332 3455555544 34
Q ss_pred CcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccc
Q 001326 581 IEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIE 660 (1099)
Q Consensus 581 i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~ 660 (1099)
+..+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|... .+|..+. ++|+.|++++|+++.+|..+.
T Consensus 232 LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp 303 (754)
T PRK15370 232 LTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP 303 (754)
T ss_pred cccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch
Confidence 444443221 23444555444433 2333222 24455555444332 3333322 356666666666665554332
Q ss_pred cCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEecc
Q 001326 661 NLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLS 740 (1099)
Q Consensus 661 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls 740 (1099)
++|+.|++++|.... +|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|. .-.++|+.|+|+
T Consensus 304 --~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs 375 (754)
T PRK15370 304 --SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPE-TLPPTITTLDVS 375 (754)
T ss_pred --hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCCh-hhcCCcCEEECC
Confidence 355666666655432 33322 2456666666666666665442 566666666666655554 112566677777
Q ss_pred CCCCcccccccCCCCCCCEEEccCCCCccccccc----cCCCCCCEEeecCCCC
Q 001326 741 GCGIIEISQDICCLSSLESLNLAENNFESLPSSI----SQLSCLRRLCLRNCNM 790 (1099)
Q Consensus 741 ~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l----~~l~~L~~L~L~~c~~ 790 (1099)
+|.+..+|..+. .+|+.|++++|+++.+|..+ ..++++..|+|.+|+.
T Consensus 376 ~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 376 RNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 776666665542 35666777777666665443 2346666666666653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=5.4e-16 Score=188.56 Aligned_cols=229 Identities=21% Similarity=0.291 Sum_probs=175.1
Q ss_pred CCCCCC-CCCCccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCC
Q 001326 561 LTEFPH-ISGNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKM 639 (1099)
Q Consensus 561 l~~l~~-~~~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l 639 (1099)
++.+|. +..+++.|++++|.+..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|... .+|..+.
T Consensus 190 LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 190 LTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred cCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--
Confidence 334443 34467788888899999987664 58999999998765 5666543 47999999998865 5666553
Q ss_pred CCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccC
Q 001326 640 EPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSG 719 (1099)
Q Consensus 640 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~ 719 (1099)
.+|+.|++++|+++.+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. ++|+.|++++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~ 334 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGE 334 (754)
T ss_pred CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccC
Confidence 589999999999999888664 58999999998755 4555443 478999999999998886553 7899999999
Q ss_pred CCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCCCCC-
Q 001326 720 CRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLPELP- 798 (1099)
Q Consensus 720 ~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~- 798 (1099)
|.+..+|.. -.++|+.|++++|++..+|..+ .++|+.|+|++|+++.+|..+. .+|+.|++++|+ +..+|..+
T Consensus 335 N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~ 408 (754)
T PRK15370 335 NALTSLPAS-LPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPESLP 408 (754)
T ss_pred CccccCChh-hcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCchhHH
Confidence 998887752 2378999999999998888755 4789999999999999887664 378999999964 55777532
Q ss_pred ------CCCCeeecccCc
Q 001326 799 ------LGLRHLEASNCK 810 (1099)
Q Consensus 799 ------~sL~~L~i~~c~ 810 (1099)
+++..|++.+++
T Consensus 409 ~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 409 HFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHhhcCCCccEEEeeCCC
Confidence 456677776654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=169.48 Aligned_cols=260 Identities=18% Similarity=0.249 Sum_probs=148.4
Q ss_pred EEeecCCCCcCCCCCCCCCceEEECCCCCcccccccc-cccCCccEEeccCCCCCCcCCC-CCCCCCccEEEeeCCCCCC
Q 001326 438 LHWHECPLKSLPSNFDLENLIELDLPYSKVEQLWEGE-KEAFKLKSIDLHQSHNLTRIPK-QSEAPNLERINLWNCKNLL 515 (1099)
Q Consensus 438 L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~Ls~~~~l~~~~~-~~~l~~L~~L~L~~~~~l~ 515 (1099)
.+.++-.++.+|... +..-+.++|..|.|+.+|++. +.+++||.||||+|.+...-|+ |.++++|..|-+-+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 345566677777665 456789999999999999765 8999999999999987776666 7889998888888866677
Q ss_pred ccCc-cccCCCCCCEEEcCCCCCcccCCCC-C-CCCCCcEEEccCCcCCCCCCCCCCCccEEEecCcCCcccCc-cccCC
Q 001326 516 YIPS-HIQNFNNLSMLSLRDCISLSCFPRN-I-HFRSPVKIDFSGCVNLTEFPHISGNVVELKLFNTPIEEVPS-SIESL 591 (1099)
Q Consensus 516 ~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~~~~l~~l~~~~~~L~~L~l~~~~i~~lp~-~i~~l 591 (1099)
.+|. .|++|..|+.|.+.-|.. ..++.. + .+++|. .|.+..|.+..++. .+..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i-~Cir~~al~dL~~l~---------------------lLslyDn~~q~i~~~tf~~l 187 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHI-NCIRQDALRDLPSLS---------------------LLSLYDNKIQSICKGTFQGL 187 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhh-cchhHHHHHHhhhcc---------------------hhcccchhhhhhccccccch
Confidence 7765 578888888888876532 222211 1 233333 33334444444443 34444
Q ss_pred CCCcEEEeCCcccc------------cccccccccCccc----------------------cEE---eccCCCCCCccc-
Q 001326 592 PNLKILNLGFCKRL------------KRVSTGICKLKYL----------------------RCL---YLLDCSDLESFP- 633 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~------------~~l~~~l~~l~~L----------------------~~L---~L~~~~~~~~~~- 633 (1099)
..++.+.+..|.+. ...|..++..... +.+ ..+.|......|
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH
Confidence 45555544433311 0011111111100 000 011111111111
Q ss_pred hhhcCCCCCCEEEccCCCCccc-CcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccC-CccccCCCC
Q 001326 634 EILEKMEPLEKLALDRSGIKEL-PSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQL-PSSIADLNK 711 (1099)
Q Consensus 634 ~~l~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~ 711 (1099)
..|..+++|++|++++|+++.+ +.+|.++..++.|.|..|++-..-...|.++..|+.|++.+|.|+.+ |..|..+.+
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 3355566666666666666544 23555666666666666655444444455666666666666666543 445555566
Q ss_pred CcEEEccCC
Q 001326 712 LRELCLSGC 720 (1099)
Q Consensus 712 L~~L~L~~~ 720 (1099)
|.+|++-.|
T Consensus 348 l~~l~l~~N 356 (498)
T KOG4237|consen 348 LSTLNLLSN 356 (498)
T ss_pred eeeeehccC
Confidence 666665444
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=6.4e-15 Score=166.92 Aligned_cols=205 Identities=25% Similarity=0.221 Sum_probs=120.6
Q ss_pred CccccCCCCCcEEEeCCcccccccccccccCcc---ccEEeccCCCCCC----ccchhhcCC-CCCCEEEccCCCCc---
Q 001326 585 PSSIESLPNLKILNLGFCKRLKRVSTGICKLKY---LRCLYLLDCSDLE----SFPEILEKM-EPLEKLALDRSGIK--- 653 (1099)
Q Consensus 585 p~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~---L~~L~L~~~~~~~----~~~~~l~~l-~~L~~L~L~~~~l~--- 653 (1099)
+..+..+++|+.|++++|.+....+..+..+.. |++|++++|.... .+...+..+ ++|+.|++++|.++
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 334445566666666666655444444433333 6666666665442 222344455 67777777777665
Q ss_pred --ccCcccccCCCCcEEEccCCCCCC----cccccccCCCCCceeecCCCCCcc-----CCccccCCCCCcEEEccCCCC
Q 001326 654 --ELPSSIENLEGLKELQLMCCSKLG----SLPESLGNLKSLVVLDANRSAILQ-----LPSSIADLNKLRELCLSGCRG 722 (1099)
Q Consensus 654 --~lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~L~~~~~ 722 (1099)
.++..+..+++|++|++++|...+ .++..+..+++|+.|++++|.+.. ++..+..+++|++|++++|.+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 334445566677777777776553 223334455677777777776652 234455667777777777765
Q ss_pred CCC--CC-----CCCCCCCCEEeccCCCCc-----ccccccCCCCCCCEEEccCCCCccc-----cccccCC-CCCCEEe
Q 001326 723 FAL--PP-----LSTLSSLRTLTLSGCGII-----EISQDICCLSSLESLNLAENNFESL-----PSSISQL-SCLRRLC 784 (1099)
Q Consensus 723 ~~l--~~-----l~~l~~L~~L~Ls~~~l~-----~l~~~~~~l~sL~~L~L~~n~l~~l-----p~~l~~l-~~L~~L~ 784 (1099)
... .. ....+.|++|++++|.++ .+...+..+++|+++++++|.++.- ...+... +.|+.|+
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 431 11 112467888888888775 1344455567788888888877632 3334444 6777777
Q ss_pred ecCCC
Q 001326 785 LRNCN 789 (1099)
Q Consensus 785 L~~c~ 789 (1099)
+.+++
T Consensus 314 ~~~~~ 318 (319)
T cd00116 314 VKDDS 318 (319)
T ss_pred cCCCC
Confidence 77654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.4e-15 Score=142.78 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=87.5
Q ss_pred CCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEE
Q 001326 590 SLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQ 669 (1099)
Q Consensus 590 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 669 (1099)
++.+.+.|.|++|++.. +|..+..+.+|+.|++++|+ .+.+|..++.+++|+.|+++-|++..+|..|+.++.|+.|+
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34444555555554322 22233333333333333322 22334444555555555555555555555555555555555
Q ss_pred ccCCCCC-CcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCccc
Q 001326 670 LMCCSKL-GSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEI 747 (1099)
Q Consensus 670 L~~~~~l-~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l 747 (1099)
+.+|... ..+|. .|..++.|+-|.+++|....+|+ ++.+++|+.|.+..|.+.++
T Consensus 109 ltynnl~e~~lpg-----------------------nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 109 LTYNNLNENSLPG-----------------------NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred ccccccccccCCc-----------------------chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence 5544433 23444 44444444445555555444443 55666666666677777777
Q ss_pred ccccCCCCCCCEEEccCCCCccccccccC
Q 001326 748 SQDICCLSSLESLNLAENNFESLPSSISQ 776 (1099)
Q Consensus 748 ~~~~~~l~sL~~L~L~~n~l~~lp~~l~~ 776 (1099)
|..++.+..|++|.+.+|+++.+|..+++
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 77788888888888888888888865544
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=9.8e-16 Score=143.78 Aligned_cols=170 Identities=27% Similarity=0.399 Sum_probs=143.8
Q ss_pred cCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEE
Q 001326 637 EKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELC 716 (1099)
Q Consensus 637 ~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 716 (1099)
-.+.+++.|.+++|+++.+|..+..+.+|+.|++++|+ .+.+|..++.+++|+.|+++-|.+..+|..|+.+|.|+.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 35667778888888888888888888899999888876 56678888899999999999999999999999999999999
Q ss_pred ccCCCCC--CCCC-CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCC
Q 001326 717 LSGCRGF--ALPP-LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQS 793 (1099)
Q Consensus 717 L~~~~~~--~l~~-l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~ 793 (1099)
+..|.+. .+|. +..+..|+.|++++|.+.-+|.+++.+++|+.|.+..|++-++|..++.+..|++|.+.+| .++.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~v 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTV 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeee
Confidence 9988853 4554 7778899999999999999999999999999999999999999999999999999999995 4555
Q ss_pred CCCCCCCCCeeecccCcC
Q 001326 794 LPELPLGLRHLEASNCKR 811 (1099)
Q Consensus 794 lp~l~~sL~~L~i~~c~~ 811 (1099)
+| +.|-.|++.+.+.
T Consensus 188 lp---pel~~l~l~~~k~ 202 (264)
T KOG0617|consen 188 LP---PELANLDLVGNKQ 202 (264)
T ss_pred cC---hhhhhhhhhhhHH
Confidence 55 4455555555443
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=3.4e-14 Score=160.95 Aligned_cols=239 Identities=23% Similarity=0.233 Sum_probs=158.9
Q ss_pred ccEEEecCcCC-----cccCccccCCCCCcEEEeCCcccc------cccccccccCccccEEeccCCCCCCccchhhcCC
Q 001326 571 VVELKLFNTPI-----EEVPSSIESLPNLKILNLGFCKRL------KRVSTGICKLKYLRCLYLLDCSDLESFPEILEKM 639 (1099)
Q Consensus 571 L~~L~l~~~~i-----~~lp~~i~~l~~L~~L~L~~~~~~------~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l 639 (1099)
++.|.+.++.+ ..++..+...++|++|+++++... ..++..+..+++|+.|++++|......+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 55556665655 345556677788888888887654 2234456678889999998888776555555444
Q ss_pred CC---CCEEEccCCCCc-----ccCcccccC-CCCcEEEccCCCCCC----cccccccCCCCCceeecCCCCCcc-----
Q 001326 640 EP---LEKLALDRSGIK-----ELPSSIENL-EGLKELQLMCCSKLG----SLPESLGNLKSLVVLDANRSAILQ----- 701 (1099)
Q Consensus 640 ~~---L~~L~L~~~~l~-----~lp~~l~~l-~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~~~i~~----- 701 (1099)
.+ |+.|++++|.+. .+...+..+ ++|+.|++++|...+ .++..+..+++|++|++++|.+..
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 44 899999888776 233345566 888899998888763 234456677788888888888772
Q ss_pred CCccccCCCCCcEEEccCCCCCCCC------CCCCCCCCCEEeccCCCCcc--c---cccc-CCCCCCCEEEccCCCCc-
Q 001326 702 LPSSIADLNKLRELCLSGCRGFALP------PLSTLSSLRTLTLSGCGIIE--I---SQDI-CCLSSLESLNLAENNFE- 768 (1099)
Q Consensus 702 lp~~~~~l~~L~~L~L~~~~~~~l~------~l~~l~~L~~L~Ls~~~l~~--l---~~~~-~~l~sL~~L~L~~n~l~- 768 (1099)
++..+..+++|+.|++++|.+.... .+..+++|++|++++|.+.. + ...+ ...+.|++|++++|.++
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 3344556678888888888754221 25567888888888888774 1 1111 12478888888888875
Q ss_pred ----cccccccCCCCCCEEeecCCCCCCC----CC---CCC-CCCCeeecccC
Q 001326 769 ----SLPSSISQLSCLRRLCLRNCNMLQS----LP---ELP-LGLRHLEASNC 809 (1099)
Q Consensus 769 ----~lp~~l~~l~~L~~L~L~~c~~l~~----lp---~l~-~sL~~L~i~~c 809 (1099)
.+...+..+++|+.|++++|+.-.. +. ..+ +.|++|++.+.
T Consensus 265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 265 DGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 3445566678888888888655432 11 122 45666665543
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2.7e-11 Score=157.46 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=186.3
Q ss_pred cCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHH
Q 001326 26 SVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
++|..+..+|-|..-++.+.. ....+++.|.|++|.||||++..+.... ..++|+. +.. ...+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~---~d~~~~~f 74 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDE---SDNQPERF 74 (903)
T ss_pred CCCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCc---ccCCHHHH
Confidence 467777889999877666643 2467899999999999999999988642 3578885 322 33444555
Q ss_pred HHHHHHHHhccccc-----------ccCCCh---hHHHHHHhc--CCeEEEEEeCCCChh--H-HHHHhcCCCCCCCCCe
Q 001326 106 RERVLSEIFEENIK-----------IETPCL---PEYIGERLR--RMKVLIVLDDVNKVG--Q-LKYLAGGIDRFGPGSR 166 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~-----------~~~~~~---~~~l~~~L~--~kr~LlVLDdv~~~~--~-~~~l~~~~~~~~~gsr 166 (1099)
...++..+...... ...... ...+...+. +.+++|||||+.... . .+.+..-.....++.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 56666665322111 000111 222222332 678999999996432 1 2222222223356678
Q ss_pred EEEEeCCcccccc--cCCCCcceEecC----CCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 001326 167 IIITTRDKWILDN--FGVHSSNIYEVN----GLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSF 240 (1099)
Q Consensus 167 IiiTTR~~~v~~~--~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 240 (1099)
+|||||...-... ..... ...++. +|+.+|+.++|....... . -.+.+.++++.++|+|+++..++..
T Consensus 155 lv~~sR~~~~~~~~~l~~~~-~~~~l~~~~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRD-QLLEIGSQQLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEeCCCCCCchHhHHhcC-cceecCHHhCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 9899998532211 11111 145666 999999999997665322 1 1245678999999999999998877
Q ss_pred cCCCCHHHHHHHHHHHhcCCCchhHHHHhh-cccCCChhhhhHHhhhccccccchHhHHHHHhcCCCchhhhHHHHhhcc
Q 001326 241 FHQKSKPDWEKALEKINRISDPDIYDVLKI-SYNDLRPEEKSIFLDIACFVVGEEKDFVTSILEDPNIAHYGLSVLIERS 319 (1099)
Q Consensus 241 L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~l~~~~~~~~~l~~L~~~s 319 (1099)
+...... .......+...+...+.+.+.- -++.||+..+++++.+|++. ....+....+.. ...+...++.|.+.+
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~-~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG-EENGQMRLEELERQG 305 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC-CCcHHHHHHHHHHCC
Confidence 6543210 1111222222123345554333 37899999999999999986 444444444443 333567789999999
Q ss_pred ceEEe-c--CCeEEehHHHHHHHHHHHhhh
Q 001326 320 LVTIS-K--FNKIEMHDLLQEMGREIVRQE 346 (1099)
Q Consensus 320 Li~~~-~--~~~~~mHdll~~~~~~i~~~~ 346 (1099)
++... + ..+|.+|++++++.+.....+
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 86532 2 247999999999999876433
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=2.3e-09 Score=124.96 Aligned_cols=285 Identities=17% Similarity=0.088 Sum_probs=167.3
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC--CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEeccccccCCCCH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG--FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~ 102 (1099)
+...|+.++||++++++|...+... ......+.|+|++|+|||++++++++++.... -..+|+. .. ...+.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~----~~~~~ 99 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQ----IDRTR 99 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CC----cCCCH
Confidence 4457789999999999999998422 23345678999999999999999999876554 2233432 21 23455
Q ss_pred HHHHHHHHHHHhcccccccC--CC-hhHHHHHHhc--CCeEEEEEeCCCChh------HHHHHhcCCCCCCCCCe--EEE
Q 001326 103 VYLRERVLSEIFEENIKIET--PC-LPEYIGERLR--RMKVLIVLDDVNKVG------QLKYLAGGIDRFGPGSR--III 169 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~--~~-~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--Iii 169 (1099)
..+...++.++......... .. ....+.+.+. +++++||||+++... .+..+...... .++++ +|.
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~ 178 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIG 178 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEE
Confidence 67778888887652211111 11 3455555554 457999999998643 34444433222 23333 666
Q ss_pred EeCCcccccccC-----CCCcceEecCCCCHHHHHHHHhhhhcC---CCC-CChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 001326 170 TTRDKWILDNFG-----VHSSNIYEVNGLEYDEARELFCNYAFK---ENH-CPDDLLALSKCVLKYANGNPLALTVLGSF 240 (1099)
Q Consensus 170 TTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~~-~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 240 (1099)
++.+..+..... .-....+.+++++.++..+++..++-. ... ..+..+.+++......|..+.|+.++-..
T Consensus 179 i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 179 ISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred EECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 666554332211 111126899999999999999877632 222 22233333333333345577777665432
Q ss_pred c-----CC---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccc----cchHhH----HHHHhcC
Q 001326 241 F-----HQ---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVV----GEEKDF----VTSILED 304 (1099)
Q Consensus 241 L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~~~~----~~~~l~~ 304 (1099)
. ++ -+.+.++.++++.. .....-.+..||.++|.++..++.... ...... ...+...
T Consensus 259 ~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 259 GLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 11 14556666666552 122344578999999988887764432 111111 1222211
Q ss_pred CCc-------hhhhHHHHhhccceEEe
Q 001326 305 PNI-------AHYGLSVLIERSLVTIS 324 (1099)
Q Consensus 305 ~~~-------~~~~l~~L~~~sLi~~~ 324 (1099)
.|. ....+..|.+.++|...
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 222 33468889999999865
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=1.9e-11 Score=151.46 Aligned_cols=248 Identities=29% Similarity=0.418 Sum_probs=166.8
Q ss_pred CCccEEEecCcCCcccCccccCCCCCcEEEeCCccc-ccccc-cccccCccccEEeccCCCCCCccchhhcCCCCCCEEE
Q 001326 569 GNVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKR-LKRVS-TGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLA 646 (1099)
Q Consensus 569 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 646 (1099)
...+.+.+.++.+..++....+ ++|++|-+..|.. ...++ ..|..++.|++|+|++|.....+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3456677777777777765543 4788888888863 33333 4477899999999999999999999999999999999
Q ss_pred ccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc---CCccccCCCCCcEEEccCCCCC
Q 001326 647 LDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ---LPSSIADLNKLRELCLSGCRGF 723 (1099)
Q Consensus 647 L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~ 723 (1099)
++++.+..+|..+.+|..|.+|++..+..+..+|.....+++|++|.+....... .-..+.++.+|+.+.+......
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~ 681 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL 681 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence 9999999999999999999999999998888888878889999999987665221 1223455666666666544431
Q ss_pred CCCCCCCCCCCC----EEeccCCCCcccccccCCCCCCCEEEccCCCCccccc-c-----cc-CCCCCCEEeecCCCCCC
Q 001326 724 ALPPLSTLSSLR----TLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPS-S-----IS-QLSCLRRLCLRNCNMLQ 792 (1099)
Q Consensus 724 ~l~~l~~l~~L~----~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~-~-----l~-~l~~L~~L~L~~c~~l~ 792 (1099)
.+..+..++.|. .+.+.+|.....+..+..+.+|+.|.+.+|.+..... + .. .+++|..+.+.+|..++
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc
Confidence 112222222222 3333344444555566667777777777776542211 0 11 14455666666666555
Q ss_pred CCC--CCCCCCCeeecccCcCcccCCC
Q 001326 793 SLP--ELPLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 793 ~lp--~l~~sL~~L~i~~c~~L~~l~~ 817 (1099)
.+. ..+++|+.|.+..|+.++.+..
T Consensus 762 ~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 762 DLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccchhhccCcccEEEEecccccccCCC
Confidence 544 3456777777777776665543
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=1.6e-08 Score=116.73 Aligned_cols=287 Identities=18% Similarity=0.138 Sum_probs=162.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcC--CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc------eeEEEEeccccccC
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV--GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE------GRCFVSNVRVESEN 98 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~ 98 (1099)
+...|+.++||++++++|...+.. .......+.|+|++|+|||++|+++++.+..... ..+|+. .. .
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~----~ 84 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQ----I 84 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CC----C
Confidence 455678999999999999999863 2233457889999999999999999987653322 123433 21 2
Q ss_pred CCCHHHHHHHHHHHHhc--ccccccC---CChhHHHHHHhc--CCeEEEEEeCCCChh-----HHHHHhcCCCC-CC--C
Q 001326 99 GHRLVYLRERVLSEIFE--ENIKIET---PCLPEYIGERLR--RMKVLIVLDDVNKVG-----QLKYLAGGIDR-FG--P 163 (1099)
Q Consensus 99 ~~~~~~l~~~ll~~l~~--~~~~~~~---~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~~--~ 163 (1099)
..+...+...++.++.. ....... ......+.+.+. +++++||||+++... .+..+.....+ .. .
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~ 164 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNA 164 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCC
Confidence 33456777788887742 1111111 112344444443 568999999998662 13333322111 11 2
Q ss_pred CCeEEEEeCCcccccccC-----CCCcceEecCCCCHHHHHHHHhhhhc---CCCCCChhHHHHHHHHHHHhCCCchH-H
Q 001326 164 GSRIIITTRDKWILDNFG-----VHSSNIYEVNGLEYDEARELFCNYAF---KENHCPDDLLALSKCVLKYANGNPLA-L 234 (1099)
Q Consensus 164 gsrIiiTTR~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLa-l 234 (1099)
...+|.+|.+........ .-....+.+++.+.+|..+++..++- ......++..+.+.+++....|.|-. +
T Consensus 165 ~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al 244 (365)
T TIGR02928 165 KVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAI 244 (365)
T ss_pred eEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHH
Confidence 234555555443211110 00012689999999999999988863 22222334445556677777888843 3
Q ss_pred HHHhhhc-----CC---CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccccc----hHhH----H
Q 001326 235 TVLGSFF-----HQ---KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVVGE----EKDF----V 298 (1099)
Q Consensus 235 ~~lg~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~----~~~~----~ 298 (1099)
.++-... .+ -+.+..+.+.+.+. .....-....||.++|.++..++...+.. .... .
T Consensus 245 ~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 245 DLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 3322111 11 24455555555542 12233456789999988877766432211 1111 1
Q ss_pred HHHhcCCCc-------hhhhHHHHhhccceEEec
Q 001326 299 TSILEDPNI-------AHYGLSVLIERSLVTISK 325 (1099)
Q Consensus 299 ~~~l~~~~~-------~~~~l~~L~~~sLi~~~~ 325 (1099)
..+....|. ....++.|...|+|....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 318 KEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 112222222 345578888999998753
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.06 E-value=2.9e-09 Score=119.48 Aligned_cols=273 Identities=16% Similarity=0.138 Sum_probs=146.6
Q ss_pred CccccchhhHHHHHHhhcCC---CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVG---FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
+.|||+++.+++|..++... ......+.++|++|+|||+||+++++++...+. +.... .......+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~----~~~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGP----ALEKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccc----hhcCchhHHH-
Confidence 57999999999998888621 223456789999999999999999998754321 11110 0011111111
Q ss_pred HHHHHhcccc----ccc--CCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccccCC
Q 001326 109 VLSEIFEENI----KIE--TPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNFGV 182 (1099)
Q Consensus 109 ll~~l~~~~~----~~~--~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~ 182 (1099)
.+..+..... ... .....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+......
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111110000 000 000112222233333334444443333222211 1234455567776544332100
Q ss_pred CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHHHHHHHH-HHhcCCC
Q 001326 183 HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPDWEKALE-KINRISD 261 (1099)
Q Consensus 183 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~-~l~~~~~ 261 (1099)
.-...+++++++.+|..+++.+.+..... .--.+....|++.|+|.|-.+..++..+ |..+.. .-.....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINR 219 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCH
Confidence 00116899999999999999988753322 1223566789999999997665554432 111100 0000000
Q ss_pred ---chhHHHHhhcccCCChhhhhHHh-hhcccccc-chHhHHHHHhcCCCc-hhhhHH-HHhhccceEEecCCe
Q 001326 262 ---PDIYDVLKISYNDLRPEEKSIFL-DIACFVVG-EEKDFVTSILEDPNI-AHYGLS-VLIERSLVTISKFNK 328 (1099)
Q Consensus 262 ---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~~~~~l~~~~~-~~~~l~-~L~~~sLi~~~~~~~ 328 (1099)
......+...|..+++.++..+. .++.+..+ ...+.+...+..... +...++ .|++++||.....++
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 11222356678899999888776 44555432 355666666655544 555577 699999997554443
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.06 E-value=1.2e-08 Score=120.01 Aligned_cols=295 Identities=18% Similarity=0.174 Sum_probs=188.2
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
+|..+...|-|..-++.+.. ..+.|.+.|..++|.|||||+.+...+. ..-..+.|+. ..+...+.....
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wls----lde~dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLS----LDESDNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEee----cCCccCCHHHHH
Confidence 45567788888877766554 3578999999999999999999998843 3445678886 233556677788
Q ss_pred HHHHHHHhccccccc-----------CCC---hhHHHHHHhc--CCeEEEEEeCCC---Ch---hHHHHHhcCCCCCCCC
Q 001326 107 ERVLSEIFEENIKIE-----------TPC---LPEYIGERLR--RMKVLIVLDDVN---KV---GQLKYLAGGIDRFGPG 164 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~-----------~~~---~~~~l~~~L~--~kr~LlVLDdv~---~~---~~~~~l~~~~~~~~~g 164 (1099)
..++..+..-.+... ... +...+..-+. .++..+||||.. +. +.++.+... ..++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCC
Confidence 888777764322211 111 2222222222 468999999974 22 235555444 3567
Q ss_pred CeEEEEeCCccccccc--CCCCcceEecC----CCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 165 SRIIITTRDKWILDNF--GVHSSNIYEVN----GLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 165 srIiiTTR~~~v~~~~--~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
-.+|||||...-+... .+.. ...++. .|+.+|+.++|...... +-...-++.+.+...|.+-|+..++
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~-~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRD-ELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred eEEEEEeccCCCCcccceeehh-hHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHH
Confidence 8999999988543221 1111 134443 48999999999876521 1122457789999999999999988
Q ss_pred hhcCC-CCHHHHHHHHHHHhcCCCch-hHHHHhhcccCCChhhhhHHhhhccccccchHhHHHHHhcCCCchhhhHHHHh
Q 001326 239 SFFHQ-KSKPDWEKALEKINRISDPD-IYDVLKISYNDLRPEEKSIFLDIACFVVGEEKDFVTSILEDPNIAHYGLSVLI 316 (1099)
Q Consensus 239 ~~L~~-~~~~~w~~~l~~l~~~~~~~-i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~l~~~~~~~~~l~~L~ 316 (1099)
-.+++ .+.+.-...+....+...+- +.+| +|.||++.|..++-+|++..-. +.+...+.+.+-...-++.|.
T Consensus 235 La~~~~~~~~q~~~~LsG~~~~l~dYL~eeV----ld~Lp~~l~~FLl~~svl~~f~--~eL~~~Ltg~~ng~amLe~L~ 308 (894)
T COG2909 235 LALRNNTSAEQSLRGLSGAASHLSDYLVEEV----LDRLPPELRDFLLQTSVLSRFN--DELCNALTGEENGQAMLEELE 308 (894)
T ss_pred HHccCCCcHHHHhhhccchHHHHHHHHHHHH----HhcCCHHHHHHHHHHHhHHHhh--HHHHHHHhcCCcHHHHHHHHH
Confidence 88873 23222111111100000011 1223 5899999999999999985422 233444444443555689999
Q ss_pred hccceEEe---cCCeEEehHHHHHHHHHHHhhh
Q 001326 317 ERSLVTIS---KFNKIEMHDLLQEMGREIVRQE 346 (1099)
Q Consensus 317 ~~sLi~~~---~~~~~~mHdll~~~~~~i~~~~ 346 (1099)
.++|+-.. +.++|+.|.++.+|.+.....+
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 99987643 2678999999999999887654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=2.8e-11 Score=123.91 Aligned_cols=110 Identities=24% Similarity=0.221 Sum_probs=84.2
Q ss_pred hcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEE
Q 001326 636 LEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLREL 715 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 715 (1099)
+...+.|+.|||++|.|+.+..++.-+|.++.|++++|.++..- .+..+++|+.||+++|.+.++..|-..+.|+++|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34456788889999988888888888888888888888876543 3777888888888888888887777778888888
Q ss_pred EccCCCCCCCCCCCCCCCCCEEeccCCCCccc
Q 001326 716 CLSGCRGFALPPLSTLSSLRTLTLSGCGIIEI 747 (1099)
Q Consensus 716 ~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l 747 (1099)
.|++|.+..+..+..+-+|..|++++|+|.++
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccchhhH
Confidence 88888777776666666666666666665543
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.04 E-value=2.3e-10 Score=123.14 Aligned_cols=195 Identities=21% Similarity=0.217 Sum_probs=100.1
Q ss_pred cccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHH------HH
Q 001326 34 LVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYL------RE 107 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 107 (1099)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..+..-...+|+....... ....... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN--ESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH--HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh--hhHHHHHHHHHHHHH
Confidence 799999999999998643 3568889999999999999999998754333445554221111 0001111 11
Q ss_pred HHHHHHhccccc----------ccC-CChhHHHHHHhc--CCeEEEEEeCCCChh-----------HHHHHhcCCCCCCC
Q 001326 108 RVLSEIFEENIK----------IET-PCLPEYIGERLR--RMKVLIVLDDVNKVG-----------QLKYLAGGIDRFGP 163 (1099)
Q Consensus 108 ~ll~~l~~~~~~----------~~~-~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~ 163 (1099)
.+...+...... ... ......+.+.+. +++++||+||++... .+..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 111112111110 001 112333333333 345999999996554 12222222111 23
Q ss_pred CCeEEEEeCCcccccc--------cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 164 GSRIIITTRDKWILDN--------FGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 164 gsrIiiTTR~~~v~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
...+|+++....+... .+.. ..+.+++|+.+++++++...+-.. ..-+.-.+..++|+..+||+|..|.
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRF--SHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred CceEEEECCchHHHHHhhcccCcccccc--ceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 3345555544433322 1222 269999999999999998865333 1101234556899999999999876
Q ss_pred H
Q 001326 236 V 236 (1099)
Q Consensus 236 ~ 236 (1099)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 33
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.04 E-value=8.9e-09 Score=113.37 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=106.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH--
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER-- 132 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-- 132 (1099)
..++.|+|++|+||||+|+.+++.....-...+++.+ ...+...+...+...+...............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~------~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN------TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC------CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999986532111223321 22345566667766653322111111122233322
Q ss_pred ---hcCCeEEEEEeCCCChh--HHHHHhcCCC---CCCCCCeEEEEeCCcccccccC--------CCCcceEecCCCCHH
Q 001326 133 ---LRRMKVLIVLDDVNKVG--QLKYLAGGID---RFGPGSRIIITTRDKWILDNFG--------VHSSNIYEVNGLEYD 196 (1099)
Q Consensus 133 ---L~~kr~LlVLDdv~~~~--~~~~l~~~~~---~~~~gsrIiiTTR~~~v~~~~~--------~~~~~~~~l~~L~~~ 196 (1099)
..+++.+||+||++... .++.+..... .......|++|.... ...... ......+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25788999999998653 4444432111 112223455665543 211110 000126789999999
Q ss_pred HHHHHHhhhhcCCC--CCChhHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001326 197 EARELFCNYAFKEN--HCPDDLLALSKCVLKYANGNPLALTVLGSFF 241 (1099)
Q Consensus 197 ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 241 (1099)
|..+++...+.... ....--.+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987764221 1112234678889999999999998888875
No 34
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.5e-09 Score=108.25 Aligned_cols=143 Identities=22% Similarity=0.324 Sum_probs=84.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCc-----eeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFE-----GRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIG 130 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~ 130 (1099)
|++.|+|.+|+||||+++.+++++..... ...|+...+... .......+...+.......... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDIS-DSNNSRSLADLLFDQLPESIAP-----IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhh-hccccchHHHHHHHhhccchhh-----hHHHHH
Confidence 57899999999999999999987755432 123333333332 1111123333333332221111 111111
Q ss_pred H-HhcCCeEEEEEeCCCChhH---------HHHHhc-CCC-CCCCCCeEEEEeCCccccc---ccCCCCcceEecCCCCH
Q 001326 131 E-RLRRMKVLIVLDDVNKVGQ---------LKYLAG-GID-RFGPGSRIIITTRDKWILD---NFGVHSSNIYEVNGLEY 195 (1099)
Q Consensus 131 ~-~L~~kr~LlVLDdv~~~~~---------~~~l~~-~~~-~~~~gsrIiiTTR~~~v~~---~~~~~~~~~~~l~~L~~ 195 (1099)
. ..+.++++||+|++|+... +..+.. -+. ...++.+|+||+|...... ..... ..+++++|++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~ 152 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSE 152 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCH
Confidence 1 2257899999999975533 111121 111 1357899999999886622 22222 2799999999
Q ss_pred HHHHHHHhhhh
Q 001326 196 DEARELFCNYA 206 (1099)
Q Consensus 196 ~ea~~Lf~~~a 206 (1099)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997764
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=6e-09 Score=117.57 Aligned_cols=263 Identities=15% Similarity=0.115 Sum_probs=148.8
Q ss_pred CCCCCCccccchhhHHHHHHhhcC---CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV---GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|...++|+|+++.++++..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. ..... .. .
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~-~~---~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALE-KP---G 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccccc-Ch---H
Confidence 355678899999999999888753 1233567889999999999999999998765432 111 10000 10 0
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCC-------------------CCC
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGID-------------------RFG 162 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~-------------------~~~ 162 (1099)
. ...++..+ ++.-+|++||++... ..+.+..... ...
T Consensus 92 ~-l~~~l~~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 92 D-LAAILTNL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred H-HHHHHHhc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 1 11111111 123355666664332 1111110000 011
Q ss_pred CCCeEEEEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcC
Q 001326 163 PGSRIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFH 242 (1099)
Q Consensus 163 ~gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~ 242 (1099)
+.+-|..|||...+.......-...+++++++.++..+++.+.+...... --.+.+..|++.|+|.|-.+..+...+.
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 23445567775544332100001268999999999999999887543321 2235678899999999965554444321
Q ss_pred CCCHHHHHHHHHHHhcCCC---chhHHHHhhcccCCChhhhhHHh-hhcccccc-chHhHHHHHhcCCCc-hhhhHH-HH
Q 001326 243 QKSKPDWEKALEKINRISD---PDIYDVLKISYNDLRPEEKSIFL-DIACFVVG-EEKDFVTSILEDPNI-AHYGLS-VL 315 (1099)
Q Consensus 243 ~~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~~~~~l~~~~~-~~~~l~-~L 315 (1099)
.|.... .-..... ....+.+...+..|++..+..+. .+..|..+ ...+.+...+..... ++..++ .|
T Consensus 228 -----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 228 -----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred -----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 111100 0000001 12234456778899999888886 45555543 355666666654443 555667 89
Q ss_pred hhccceEEecCC
Q 001326 316 IERSLVTISKFN 327 (1099)
Q Consensus 316 ~~~sLi~~~~~~ 327 (1099)
++.+||.....+
T Consensus 302 i~~~li~~~~~g 313 (328)
T PRK00080 302 IQQGFIQRTPRG 313 (328)
T ss_pred HHcCCcccCCch
Confidence 999999765444
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.8e-11 Score=126.60 Aligned_cols=156 Identities=29% Similarity=0.313 Sum_probs=96.2
Q ss_pred hhcCCCCCCEEEccCCCCcccCccc--ccCCCCcEEEccCCCCCC-cccccccCCCCCceeecCCCC-CccCCccccCCC
Q 001326 635 ILEKMEPLEKLALDRSGIKELPSSI--ENLEGLKELQLMCCSKLG-SLPESLGNLKSLVVLDANRSA-ILQLPSSIADLN 710 (1099)
Q Consensus 635 ~l~~l~~L~~L~L~~~~l~~lp~~l--~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~~~-i~~lp~~~~~l~ 710 (1099)
....+|+|+.|+|+.|.+....++. ..+++|+.|.|+.|.+.. .+-..+..+|+|+.|++..|. +..-......+.
T Consensus 167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ 246 (505)
T ss_pred HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence 3445555666666655554322211 245666777777776542 222234456777777777763 222233344566
Q ss_pred CCcEEEccCCCCCCCCC---CCCCCCCCEEeccCCCCcc--cccc-----cCCCCCCCEEEccCCCCcccc--ccccCCC
Q 001326 711 KLRELCLSGCRGFALPP---LSTLSSLRTLTLSGCGIIE--ISQD-----ICCLSSLESLNLAENNFESLP--SSISQLS 778 (1099)
Q Consensus 711 ~L~~L~L~~~~~~~l~~---l~~l~~L~~L~Ls~~~l~~--l~~~-----~~~l~sL~~L~L~~n~l~~lp--~~l~~l~ 778 (1099)
.|++|+|++|.+...+. .+.++.|+.|+++.|.+.+ +|+. ...+++|++|++..|++..++ ..+..++
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence 77777888777666553 6777888888888888775 3333 456788888988888887655 2456677
Q ss_pred CCCEEeecCCCC
Q 001326 779 CLRRLCLRNCNM 790 (1099)
Q Consensus 779 ~L~~L~L~~c~~ 790 (1099)
+|+.|.+..+..
T Consensus 327 nlk~l~~~~n~l 338 (505)
T KOG3207|consen 327 NLKHLRITLNYL 338 (505)
T ss_pred hhhhhhcccccc
Confidence 777777666543
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=1.6e-11 Score=136.28 Aligned_cols=172 Identities=28% Similarity=0.376 Sum_probs=87.7
Q ss_pred cEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCC
Q 001326 595 KILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCS 674 (1099)
Q Consensus 595 ~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~ 674 (1099)
...+++.|++ ..+|..++.+..|+.+.+..|.+ ..+|..+.++..|..|+|+.|++..+|..++.|+ |+.|.+++|+
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3445555442 23344444444444444444332 2345556666666666666666666666655544 4555554443
Q ss_pred CCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcccccccCC
Q 001326 675 KLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQDICC 753 (1099)
Q Consensus 675 ~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~~~~ 753 (1099)
++.+|..++.+.+|..|+.+.|.+..+|+.++.+.+|+.|.+..|....+|. +. .-.|..|+++.|++..+|..|..
T Consensus 155 -l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 155 -LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred -cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhh
Confidence 4445555555555555555555555555555555555555555555444443 22 22344455555555555555555
Q ss_pred CCCCCEEEccCCCCcccc
Q 001326 754 LSSLESLNLAENNFESLP 771 (1099)
Q Consensus 754 l~sL~~L~L~~n~l~~lp 771 (1099)
+..|++|-|.+|.+.+=|
T Consensus 233 m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhheeeeeccCCCCCCh
Confidence 555555555555444444
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-10 Score=125.70 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=71.7
Q ss_pred hcCCCCCCEEEccCCCCc---ccCcccccCCCCcEEEccCCCCCCccccc-ccCCCCCceeecCCCCCc--cCCccccCC
Q 001326 636 LEKMEPLEKLALDRSGIK---ELPSSIENLEGLKELQLMCCSKLGSLPES-LGNLKSLVVLDANRSAIL--QLPSSIADL 709 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~~~i~--~lp~~~~~l 709 (1099)
...+++++.|+|++|-+. .+......|++|+.|+++.|....-.... -..+++|+.|.++.|+++ .+...+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344555555555555433 22223345555555555555433211111 113445555555555554 222333445
Q ss_pred CCCcEEEccCCCCCCCC--CCCCCCCCCEEeccCCCCcccc--cccCCCCCCCEEEccCCCCccc--ccc-----ccCCC
Q 001326 710 NKLRELCLSGCRGFALP--PLSTLSSLRTLTLSGCGIIEIS--QDICCLSSLESLNLAENNFESL--PSS-----ISQLS 778 (1099)
Q Consensus 710 ~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~Ls~~~l~~l~--~~~~~l~sL~~L~L~~n~l~~l--p~~-----l~~l~ 778 (1099)
|+|+.|+|..|...... +...+..|++|+|++|++...+ ...+.++.|+.|+++.|.+.++ |+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 55555555555321111 1333455555555555555444 2344555555555555555532 222 23455
Q ss_pred CCCEEeecCCCC
Q 001326 779 CLRRLCLRNCNM 790 (1099)
Q Consensus 779 ~L~~L~L~~c~~ 790 (1099)
+|++|++..|+.
T Consensus 302 kL~~L~i~~N~I 313 (505)
T KOG3207|consen 302 KLEYLNISENNI 313 (505)
T ss_pred cceeeecccCcc
Confidence 555555555443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=4e-11 Score=133.27 Aligned_cols=183 Identities=30% Similarity=0.390 Sum_probs=132.6
Q ss_pred eccCCCCCCccchhhcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCcc
Q 001326 622 YLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQ 701 (1099)
Q Consensus 622 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 701 (1099)
+++.|. ...+|..++.+..|+.+.+..|.+..+|..+.++..|+.|+|+.|.+ ..+|..+..++ |+.|-+++|+++.
T Consensus 81 DlsrNR-~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 81 DLSRNR-FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred hccccc-cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCcccc
Confidence 344433 34566677777778888888888888888888888888888887763 44555565555 7778888888888
Q ss_pred CCccccCCCCCcEEEccCCCCCCCCC-CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCC
Q 001326 702 LPSSIADLNKLRELCLSGCRGFALPP-LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCL 780 (1099)
Q Consensus 702 lp~~~~~l~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L 780 (1099)
+|..++.++.|..|+.+.|.+..+|+ ++.+.+|+.|++..|++..+|..+. .-.|..||+++|++..+|.+|.++..|
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHL 236 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhh
Confidence 88888877888888888888777766 7778888888888888888887777 345778888888888888888888888
Q ss_pred CEEeecCCCCCCCCCCC------CCCCCeeecccC
Q 001326 781 RRLCLRNCNMLQSLPEL------PLGLRHLEASNC 809 (1099)
Q Consensus 781 ~~L~L~~c~~l~~lp~l------~~sL~~L~i~~c 809 (1099)
++|-|.+|+ |++-|.. .--.++|++.-|
T Consensus 237 q~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 888887754 4555521 123466777666
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=126.59 Aligned_cols=327 Identities=16% Similarity=0.170 Sum_probs=193.2
Q ss_pred ccccchhhHHHHHHhhcCC-CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce---eEEEEeccccccCCCCHHHHHHH
Q 001326 33 GLVGLSSRIEKLISLLCVG-FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG---RCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
.++||+.+++.|...+... .....++.+.|.+|||||+|+++|...+..++.. ..|-.-.+ .. .-..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~-~i-pl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFER-NI-PLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccC-CC-chHHHHHHHHH
Confidence 3799999999999998743 3346799999999999999999999977665211 11111000 00 11122233444
Q ss_pred HHHHHhcccc-------------------c-----------cc---------CCC--------hhHHHHHHh-cCCeEEE
Q 001326 109 VLSEIFEENI-------------------K-----------IE---------TPC--------LPEYIGERL-RRMKVLI 140 (1099)
Q Consensus 109 ll~~l~~~~~-------------------~-----------~~---------~~~--------~~~~l~~~L-~~kr~Ll 140 (1099)
+..++..... . .. ... ....+.... +.|++++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 4443322100 0 00 000 011112222 3569999
Q ss_pred EEeCC-CChhH----HHHHhcCCC---CCCCCCeEEEEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCC
Q 001326 141 VLDDV-NKVGQ----LKYLAGGID---RFGPGSRIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHC 212 (1099)
Q Consensus 141 VLDdv-~~~~~----~~~l~~~~~---~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 212 (1099)
|+||+ |-... ++.+..... ......-.+.|.+...-.-.........+.+.+|+..+...+..........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 99999 43332 333333322 0001112223333331111111222237999999999999999888754222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHhhhcCCC-------CHHHHHHHHHHHhcCCC-chhHHHHhhcccCCChhhhhHHh
Q 001326 213 PDDLLALSKCVLKYANGNPLALTVLGSFFHQK-------SKPDWEKALEKINRISD-PDIYDVLKISYNDLRPEEKSIFL 284 (1099)
Q Consensus 213 ~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl 284 (1099)
...+..+.|+++..|+|+.+..+-..+... +...|..-...+..... +.+.+.+..-.+.||...|++.-
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 223567889999999999999888887653 34456655554443322 23555688889999999999999
Q ss_pred hhccccccchHhHHHHHhcCCCc--hhhhHHHHhhccceEEec---------CC-eEEehHHHHHHHHHHHhhhcccCCC
Q 001326 285 DIACFVVGEEKDFVTSILEDPNI--AHYGLSVLIERSLVTISK---------FN-KIEMHDLLQEMGREIVRQECIKEPG 352 (1099)
Q Consensus 285 ~la~f~~~~~~~~~~~~l~~~~~--~~~~l~~L~~~sLi~~~~---------~~-~~~mHdll~~~~~~i~~~~~~~~~~ 352 (1099)
..||+.+.++.+.+..++..... +...++.|....++..++ .. +-..||.+|+.+.....+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 99999999998888888876554 333344444444333211 11 2256888888887765543
Q ss_pred CcccccChHHHHHHHhcCCC
Q 001326 353 KRSRLWNHEEILHVIKKNKG 372 (1099)
Q Consensus 353 ~~~~l~~~~~i~~vl~~~~~ 372 (1099)
.|...|..+...+..+..
T Consensus 390 --~rq~~H~~i~~lL~~~~~ 407 (849)
T COG3899 390 --QRQYLHLRIGQLLEQNIP 407 (849)
T ss_pred --hHHHHHHHHHHHHHHhCC
Confidence 233456666666665543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.6e-10 Score=116.88 Aligned_cols=126 Identities=28% Similarity=0.278 Sum_probs=99.8
Q ss_pred ccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEc
Q 001326 683 LGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNL 762 (1099)
Q Consensus 683 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L 762 (1099)
+..-+.|++||+++|.|+.+..+..-.|.++.|+++.|.+..+..+..+++|+.|+||+|.++++..+-..+-+.+.|.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34446788899999999999888888999999999999988888888999999999999998888777777888899999
Q ss_pred cCCCCccccccccCCCCCCEEeecCCCCCCCCC-----CCCCCCCeeecccCc
Q 001326 763 AENNFESLPSSISQLSCLRRLCLRNCNMLQSLP-----ELPLGLRHLEASNCK 810 (1099)
Q Consensus 763 ~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-----~l~~sL~~L~i~~c~ 810 (1099)
++|.++++. +++.+.+|..||+++|+. +.+. ...|.|+.|.+.++|
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCC
Confidence 999888776 778888999999988643 2222 123456666666655
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.5e-09 Score=126.72 Aligned_cols=153 Identities=37% Similarity=0.479 Sum_probs=104.0
Q ss_pred CCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCC
Q 001326 641 PLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGC 720 (1099)
Q Consensus 641 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~ 720 (1099)
+|+.|++++|.+..+|..+..+++|+.|++++|+.. .+|...+.+++|+.|++++|.+..+|.....+..|++|.+++|
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 666666666666666666666666777766666543 3333334666777777777777777766666666777777777
Q ss_pred C-CCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCCCC
Q 001326 721 R-GFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCNMLQSLP 795 (1099)
Q Consensus 721 ~-~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 795 (1099)
. ...+..+..+.++..|.+.+|.+..++..+..+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 220 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 220 SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 4 444444667777777777777777666777777778888888877777775 7777777777777766555554
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=6.4e-09 Score=121.40 Aligned_cols=179 Identities=33% Similarity=0.388 Sum_probs=135.5
Q ss_pred CCccEEEecCcCCcccCccccCCC-CCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEc
Q 001326 569 GNVVELKLFNTPIEEVPSSIESLP-NLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLAL 647 (1099)
Q Consensus 569 ~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 647 (1099)
..+..|.+.++.+..+|.....+. +|+.|++++|.+.. +|..+..+++|+.|++++|..... |.....+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheec
Confidence 356778888888888888888885 88899988887543 445577788888888888766543 333447788888888
Q ss_pred cCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC
Q 001326 648 DRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP 727 (1099)
Q Consensus 648 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~ 727 (1099)
++|++..+|..+....+|++|.+++|.. ...+..+..+.++..+.+.+|.+..++..++.+++|+.|++++|.+..++.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 8888888888776777788888888762 334445677777888888888887777788888888888888888888777
Q ss_pred CCCCCCCCEEeccCCCCcccccc
Q 001326 728 LSTLSSLRTLTLSGCGIIEISQD 750 (1099)
Q Consensus 728 l~~l~~L~~L~Ls~~~l~~l~~~ 750 (1099)
++.+.+|+.|+++++.+...+..
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccccCccCEEeccCccccccchh
Confidence 77888888888888877765443
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2e-09 Score=107.44 Aligned_cols=107 Identities=31% Similarity=0.345 Sum_probs=41.4
Q ss_pred cCCCCCceeecCCCCCccCCcccc-CCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCccccccc-CCCCCCCEEE
Q 001326 684 GNLKSLVVLDANRSAILQLPSSIA-DLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDI-CCLSSLESLN 761 (1099)
Q Consensus 684 ~~l~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~-~~l~sL~~L~ 761 (1099)
.+..++++|++.+|.|..+. .++ .+.+|+.|++++|.+..+..+..++.|++|++++|.++.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 34456777777777777764 344 57888888899998888888888999999999999999886654 3688999999
Q ss_pred ccCCCCcccc--ccccCCCCCCEEeecCCCCC
Q 001326 762 LAENNFESLP--SSISQLSCLRRLCLRNCNML 791 (1099)
Q Consensus 762 L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l 791 (1099)
+++|++..+. ..+..+++|+.|+|.+|+.-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999887554 35677899999999998754
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.80 E-value=5.9e-10 Score=117.68 Aligned_cols=184 Identities=20% Similarity=0.183 Sum_probs=103.8
Q ss_pred ccCCCCCcEEEeCCcccccccccc----cccCccccEEeccCCCCCCccc-------------hhhcCCCCCCEEEccCC
Q 001326 588 IESLPNLKILNLGFCKRLKRVSTG----ICKLKYLRCLYLLDCSDLESFP-------------EILEKMEPLEKLALDRS 650 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~~~~~~l~~~----l~~l~~L~~L~L~~~~~~~~~~-------------~~l~~l~~L~~L~L~~~ 650 (1099)
+..+++|++|+||+|.+....+.. +.++..|++|+|.+|..-..-. .....-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 445668888888888776554443 4567778888887776543211 12234456666666666
Q ss_pred CCcccC-----cccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCC
Q 001326 651 GIKELP-----SSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFAL 725 (1099)
Q Consensus 651 ~l~~lp-----~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l 725 (1099)
.+..-+ ..+...+.|+.+.+..|.+...-- +-+...+..+++|+.|+|.+|.++.-
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-------------------~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-------------------TALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchh-------------------HHHHHHHHhCCcceeeecccchhhhH
Confidence 655332 233444555555555554321100 01123345555666666666554322
Q ss_pred C------CCCCCCCCCEEeccCCCCcc-----cccc-cCCCCCCCEEEccCCCCc-----cccccccCCCCCCEEeecCC
Q 001326 726 P------PLSTLSSLRTLTLSGCGIIE-----ISQD-ICCLSSLESLNLAENNFE-----SLPSSISQLSCLRRLCLRNC 788 (1099)
Q Consensus 726 ~------~l~~l~~L~~L~Ls~~~l~~-----l~~~-~~~l~sL~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c 788 (1099)
. .+..+++|++|++++|.+.. +... -...|+|+.|.+.+|.++ .+..++...|.|+.|+|++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 1 14555667777777776663 2222 234677888888888776 23345556778888888887
Q ss_pred CC
Q 001326 789 NM 790 (1099)
Q Consensus 789 ~~ 790 (1099)
..
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 53
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=4.1e-09 Score=105.16 Aligned_cols=125 Identities=26% Similarity=0.284 Sum_probs=33.4
Q ss_pred CCCCCEEEccCCCCcccCcccc-cCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccc-cCCCCCcEEE
Q 001326 639 MEPLEKLALDRSGIKELPSSIE-NLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSI-ADLNKLRELC 716 (1099)
Q Consensus 639 l~~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~ 716 (1099)
..++++|+|.+|.|+.+.. ++ .+.+|+.|++++|.+... +.+..++.|++|++++|.++.++..+ ..+++|++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3345566666665555432 33 345555555555554322 12444555555555555555554333 2345555555
Q ss_pred ccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccc----cccCCCCCCEEeec
Q 001326 717 LSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPS----SISQLSCLRRLCLR 786 (1099)
Q Consensus 717 L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~ 786 (1099)
+++|.+..+..+ ..+..+++|+.|+|.+|.++..+. .+..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l--------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNEL--------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCC--------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHh--------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 555443332221 123445566666666665553331 34556666666644
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.74 E-value=1e-07 Score=103.33 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=105.6
Q ss_pred CCCCCccccchhhHH---HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHH
Q 001326 28 SSDFKGLVGLSSRIE---KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
|..-+++||.+.-+. -|..++. ...+.-.-+||++|+||||||+.+.......|... +....++.+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHH
Confidence 444456666554442 2333442 34555556999999999999999999887776422 112344444
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCC--ChhHHHHHhcCCCCCCCCCeEEE--EeCCccccccc
Q 001326 105 LRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVN--KVGQLKYLAGGIDRFGPGSRIII--TTRDKWILDNF 180 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~~~ 180 (1099)
+.+-+-. .-+.+..+++.+|.+|.|. +..|-+.|++.. ..|.-|+| ||.++...-..
T Consensus 89 lr~i~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 89 LREIIEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHHHHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecH
Confidence 4433211 1123345899999999996 445667776654 56777776 66666542221
Q ss_pred C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCCCh-----hHHHHHHHHHHHhCCCch
Q 001326 181 G-VHSSNIYEVNGLEYDEARELFCNYAFKENHCPD-----DLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 181 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-----~~~~~~~~i~~~~~GlPL 232 (1099)
. .....++++++|+.+|-.+++.+.+-.....-+ --++...-++..+.|---
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1 122238999999999999999884432111111 122345567888888654
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.72 E-value=1.5e-09 Score=114.59 Aligned_cols=223 Identities=18% Similarity=0.168 Sum_probs=152.2
Q ss_pred cCCCCCcEEEeCCcccccc----cccccccCccccEEeccCCCC---CC-------ccchhhcCCCCCCEEEccCCCCc-
Q 001326 589 ESLPNLKILNLGFCKRLKR----VSTGICKLKYLRCLYLLDCSD---LE-------SFPEILEKMEPLEKLALDRSGIK- 653 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~~~----l~~~l~~l~~L~~L~L~~~~~---~~-------~~~~~l~~l~~L~~L~L~~~~l~- 653 (1099)
.....++.|+|++|.+... +...+.+.+.|+..++++--- .. .+...+...++|++|+||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3455666666666655432 223345555666666655221 11 22234556678888888888665
Q ss_pred ----ccCcccccCCCCcEEEccCCCCCCc-------------ccccccCCCCCceeecCCCCCccCC-----ccccCCCC
Q 001326 654 ----ELPSSIENLEGLKELQLMCCSKLGS-------------LPESLGNLKSLVVLDANRSAILQLP-----SSIADLNK 711 (1099)
Q Consensus 654 ----~lp~~l~~l~~L~~L~L~~~~~l~~-------------lp~~l~~l~~L~~L~l~~~~i~~lp-----~~~~~l~~ 711 (1099)
.+-.-+.++.+|++|.|.+|.+-.. .....++-+.|+++...+|.+..-+ ..+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 2223456788888888888875321 1233566789999999999887654 35677899
Q ss_pred CcEEEccCCCCCCCC------CCCCCCCCCEEeccCCCCcc-----cccccCCCCCCCEEEccCCCCcc-----ccccc-
Q 001326 712 LRELCLSGCRGFALP------PLSTLSSLRTLTLSGCGIIE-----ISQDICCLSSLESLNLAENNFES-----LPSSI- 774 (1099)
Q Consensus 712 L~~L~L~~~~~~~l~------~l~~l~~L~~L~Ls~~~l~~-----l~~~~~~l~sL~~L~L~~n~l~~-----lp~~l- 774 (1099)
|+.+.++.|.+..-. .+..+++|+.|+|.+|.++. +...+..+++|+.|+++.|.++. +-..+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 999999999854322 27889999999999999983 55668889999999999998872 22222
Q ss_pred cCCCCCCEEeecCCCCCCCCC-------CCCCCCCeeecccCcC
Q 001326 775 SQLSCLRRLCLRNCNMLQSLP-------ELPLGLRHLEASNCKR 811 (1099)
Q Consensus 775 ~~l~~L~~L~L~~c~~l~~lp-------~l~~sL~~L~i~~c~~ 811 (1099)
...|+|+.|.+.+|..-..-- .--+.|..|++.+|..
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 348999999999986643211 1247889999998864
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=1e-07 Score=101.43 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=88.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
.+.+.|||.+|+|||+||+++++.+..+...+.|+.... ...... .+.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~~~~~~--------------------~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------SQYFSP--------------------AVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------hhhhhH--------------------HHHhhcc
Confidence 356789999999999999999998766555566764210 000000 1111222
Q ss_pred CCeEEEEEeCCCCh---hHHHH-HhcCCCCC-CCCCeEEEEeCCc----------ccccccCCCCcceEecCCCCHHHHH
Q 001326 135 RMKVLIVLDDVNKV---GQLKY-LAGGIDRF-GPGSRIIITTRDK----------WILDNFGVHSSNIYEVNGLEYDEAR 199 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~---~~~~~-l~~~~~~~-~~gsrIiiTTR~~----------~v~~~~~~~~~~~~~l~~L~~~ea~ 199 (1099)
+.-+|||||++.. .+|+. +...++.. ..|..+||+|.+. .+...++... +++++++++++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~--~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE--IYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC--eeeCCCCCHHHHH
Confidence 2348999999853 34442 22222211 2466666555443 3333333333 8999999999999
Q ss_pred HHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 200 ELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 200 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
+++.+.+......- -.+...-|++.+.|..-++.
T Consensus 168 ~iL~~~a~~~~l~l--~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 168 IVLQRNAYQRGIEL--SDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHH
Confidence 99999887443211 12455566777766665443
No 50
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=8.6e-07 Score=105.31 Aligned_cols=246 Identities=13% Similarity=0.060 Sum_probs=133.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcC---CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-----Cc-e-eEEEEeccccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV---GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE-----FE-G-RCFVSNVRVES 96 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~-~-~~~~~~~~~~~ 96 (1099)
+...|+.++|||+++++|...|.. ++....++.|+|++|.|||+.++.|.+++... .. . .+++. ..
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm--- 825 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GM--- 825 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CC---
Confidence 445678999999999999988863 22334677899999999999999999876432 11 1 23332 21
Q ss_pred cCCCCHHHHHHHHHHHHhcccccccCC--ChhHHHHHHhc---CCeEEEEEeCCCChh--HHHHHhcCCCCC-CCCCeEE
Q 001326 97 ENGHRLVYLRERVLSEIFEENIKIETP--CLPEYIGERLR---RMKVLIVLDDVNKVG--QLKYLAGGIDRF-GPGSRII 168 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~~~~~~~~~~--~~~~~l~~~L~---~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gsrIi 168 (1099)
.......+...+..++.......... .....+.+.+. +...+||||+|+... +-+.|...+.|. ..+++|+
T Consensus 826 -~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLi 904 (1164)
T PTZ00112 826 -NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLV 904 (1164)
T ss_pred -ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEE
Confidence 23445666677777774433221111 12333433331 224689999997543 111122111111 2455655
Q ss_pred E--EeCCccc--------ccccCCCCcceEecCCCCHHHHHHHHhhhhcCC--CCCChhHHHHHHHHHHHhCCCchHHHH
Q 001326 169 I--TTRDKWI--------LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKE--NHCPDDLLALSKCVLKYANGNPLALTV 236 (1099)
Q Consensus 169 i--TTR~~~v--------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~~i~~~~~GlPLal~~ 236 (1099)
| +|.+..+ ...++.. .+..++.+.++-.+++..++-.. ....+..+-+|+.++...|-.-.||.+
T Consensus 905 LIGISNdlDLperLdPRLRSRLg~e---eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDI 981 (1164)
T PTZ00112 905 LIAISNTMDLPERLIPRCRSRLAFG---RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQI 981 (1164)
T ss_pred EEEecCchhcchhhhhhhhhccccc---cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 4 3332221 1122211 36679999999999999887532 122233444444444444445566655
Q ss_pred HhhhcCC-----CCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhc
Q 001326 237 LGSFFHQ-----KSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIA 287 (1099)
Q Consensus 237 lg~~L~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 287 (1099)
+-..... -..+.-+.+..++.. ..+.+++ ..||.++|-+++.++
T Consensus 982 LRrAgEikegskVT~eHVrkAleeiE~---srI~e~I----ktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 982 CRKAFENKRGQKIVPRDITEATNQLFD---SPLTNAI----NYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHHHHhhcCCCccCHHHHHHHHHHHHh---hhHHHHH----HcCCHHHHHHHHHHH
Confidence 5443321 122334444443321 2233333 578888776665443
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.57 E-value=1.1e-07 Score=106.01 Aligned_cols=134 Identities=25% Similarity=0.370 Sum_probs=66.1
Q ss_pred cccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCC-CCccCCccccCCCCCcEEEccCC-CCCCCCCCCCCCCCCE
Q 001326 659 IENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRS-AILQLPSSIADLNKLRELCLSGC-RGFALPPLSTLSSLRT 736 (1099)
Q Consensus 659 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~~-~~~~l~~l~~l~~L~~ 736 (1099)
+..+.+++.|++++| .+..+|. -.++|+.|.+++| .+..+|..+ .++|+.|++++| .+..+| ++|+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccce
Confidence 344677777888777 4555552 2235777777664 334455433 246666666666 333333 34566
Q ss_pred EeccCCCCcccccccCCCCCCCEEEccCCCCc---cccccccCCCCCCEEeecCCCCCCCCCCCCCCCCeeeccc
Q 001326 737 LTLSGCGIIEISQDICCLSSLESLNLAENNFE---SLPSSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLEASN 808 (1099)
Q Consensus 737 L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~ 808 (1099)
|+++++....++. -.++|+.|.+.+++.. .+|.. -.++|+.|++++|..+...+.+|.+|+.|.++.
T Consensus 117 L~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred EEeCCCCCccccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 6665544322111 1134555555432211 11100 014566666666665432223556666666554
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=1.2e-06 Score=102.02 Aligned_cols=180 Identities=19% Similarity=0.246 Sum_probs=107.0
Q ss_pred CCCCCCccccchhhHHH---HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEK---LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|...+.+||.+..+.. +..++. ......+.++|++|+||||+|+.+++.....|.. +.. ...+..
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a------~~~~~~ 75 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA------VTSGVK 75 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec------ccccHH
Confidence 34556789999888666 777774 3345677899999999999999999977554421 110 111222
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEE--eCCcc--cc
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIIT--TRDKW--IL 177 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiT--TR~~~--v~ 177 (1099)
.+. .++.... .....+++.+|++|+++.. .+.+.|...+. .|..++|. |.+.. +.
T Consensus 76 ~ir-~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 76 DLR-EVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVN 136 (413)
T ss_pred HHH-HHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhcc
Confidence 221 1211110 0111357889999999855 35555655442 35555553 33332 11
Q ss_pred cccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCchHHHHH
Q 001326 178 DNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 178 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.... .....+++++++.++..+++.+.+....... .-..+..+.++++++|.+..+..+
T Consensus 137 ~aL~-SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 137 PALL-SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHHh-ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1110 1112799999999999999987653211111 122355677899999999765433
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.51 E-value=1.6e-06 Score=92.68 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=99.9
Q ss_pred CCcccc--chhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHH
Q 001326 31 FKGLVG--LSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 31 ~~~~vG--r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
.++|++ .+..++++.+++. ....+.|.|+|.+|+|||++|++++++........+|+. +.... ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~----------~~ 80 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA----------QA 80 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH----------Hh
Confidence 345652 4456677777754 234578889999999999999999997654444445553 11111 00
Q ss_pred HHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---H-HHHHhcCCCC-CCCCCeEEEEeCCccc-------
Q 001326 109 VLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---Q-LKYLAGGIDR-FGPGSRIIITTRDKWI------- 176 (1099)
Q Consensus 109 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~v------- 176 (1099)
. .. +.+.+.+ .-+|||||++... . .+.+...+.. ...+.++|+||+....
T Consensus 81 ~-~~----------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 81 D-PE----------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred H-HH----------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 0 00 0111222 2389999997543 2 2333322211 1234588998885421
Q ss_pred --ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 177 --LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 177 --~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
...+... ..++++++++++...++...+-+.... --.+..+.+.+++.|+|..+.-+.
T Consensus 143 ~L~~r~~~~--~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 143 DLRTRLAWG--LVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHhcC--eeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 1122111 279999999999999987765322211 112455667777888887765553
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.49 E-value=1.9e-06 Score=87.86 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=99.8
Q ss_pred cCCCCCCccccchhhHHHHHHhhcC---CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCH
Q 001326 26 SVSSDFKGLVGLSSRIEKLISLLCV---GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 102 (1099)
..|..-++|||.+.-++++.-++.. ..+....+.+||++|+||||||+.++++....|. +... . .. ...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~-~i---~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-P-AI---EKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-C-C-----SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-h-hh---hhH
Confidence 3566779999999888887666542 2344677889999999999999999998877653 1210 0 00 011
Q ss_pred HHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCC--------CCCC-------
Q 001326 103 VYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRF--------GPGS------- 165 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~--------~~gs------- 165 (1099)
.++ ...+ ..++ ++-+|.+|++.... +-+.|.+....+ ++++
T Consensus 90 ~dl--------------------~~il-~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 90 GDL--------------------AAIL-TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp HHH--------------------HHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred HHH--------------------HHHH-HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 111 1111 1122 34467779997543 333333322111 2222
Q ss_pred ----eEEEEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001326 166 ----RIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFF 241 (1099)
Q Consensus 166 ----rIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 241 (1099)
-|=.|||...+-.-..-.-..+.+++..+.+|-.++..+.|..-.. +-..+.+.+|++.+.|-|-...-+-...
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 2446888765533321111125689999999999999887754332 2334778899999999997655444444
Q ss_pred C
Q 001326 242 H 242 (1099)
Q Consensus 242 ~ 242 (1099)
+
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 3
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.44 E-value=1e-06 Score=98.48 Aligned_cols=159 Identities=23% Similarity=0.350 Sum_probs=98.8
Q ss_pred hcCCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCC-CCccCCccccCCCCCcE
Q 001326 636 LEKMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRS-AILQLPSSIADLNKLRE 714 (1099)
Q Consensus 636 l~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~ 714 (1099)
+..+.+++.|++++|.++.+|. -.++|++|.+++|..+..+|..+. ++|+.|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 3345667777777777777762 224588888888777777776553 57888888877 5555553 4667
Q ss_pred EEccCCCCCCCCCCCCCCCCCEEeccCCCCc---ccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCC--
Q 001326 715 LCLSGCRGFALPPLSTLSSLRTLTLSGCGII---EISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCN-- 789 (1099)
Q Consensus 715 L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~---~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~-- 789 (1099)
|++.++....++.+ .++|+.|.+.+++.. .+|. .-.++|++|++++|....+|..+. .+|+.|.++.|.
T Consensus 117 L~L~~n~~~~L~~L--PssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~ 190 (426)
T PRK15386 117 LEIKGSATDSIKNV--PNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKT 190 (426)
T ss_pred EEeCCCCCcccccC--cchHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEecccccc
Confidence 77766553332221 136777877553311 1221 123689999999888766665444 589999987753
Q ss_pred CCC-CCCCCCCCCCeeecccCcCc
Q 001326 790 MLQ-SLPELPLGLRHLEASNCKRL 812 (1099)
Q Consensus 790 ~l~-~lp~l~~sL~~L~i~~c~~L 812 (1099)
.+. ..+.+|+++ .|.+.+|-++
T Consensus 191 sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 191 TWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cccCccccccccc-Eechhhhccc
Confidence 111 112455677 8888888543
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.43 E-value=1.8e-06 Score=99.05 Aligned_cols=176 Identities=20% Similarity=0.248 Sum_probs=102.0
Q ss_pred CCCCCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
....+++.|+++.++++.+.+... -...+-|.++|++|+|||++|++++++....|-.. . .
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v-----~---~ 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-----V---G 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec-----c---h
Confidence 334467999999999998877421 12245688999999999999999999876543211 0 0
Q ss_pred cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCC
Q 001326 97 ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDR 160 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 160 (1099)
..+......+.. . .....+...-...+.+|+|||++... .+..+......
T Consensus 190 ------~~l~~~~~g~~~----~----~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 ------SELVRKYIGEGA----R----LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred ------HHHHHHhhhHHH----H----HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 011111111000 0 01111111123456899999997531 12233322221
Q ss_pred C--CCCCeEEEEeCCcccc-----cccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCCh-hHHHHHHHHHHHhCCCc
Q 001326 161 F--GPGSRIIITTRDKWIL-----DNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPD-DLLALSKCVLKYANGNP 231 (1099)
Q Consensus 161 ~--~~gsrIiiTTR~~~v~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-~~~~~~~~i~~~~~GlP 231 (1099)
. ..+.+||.||...... .....+. .++++..+.++..++|..++.+.....+ + ...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~--~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDR--IIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCce--EEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1 2456788888754322 2112344 7899999999999999988865443221 2 345666676654
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=1.1e-05 Score=95.98 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=111.2
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------------Cce
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---------------------FEG 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~ 85 (1099)
.|...+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+... |..
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D 89 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD 89 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce
Confidence 35566889999999999999986432 24566799999999999999998865321 001
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~ 163 (1099)
.+.+. .. ...++..+. +++.... ..-..++.-++|||+++... .++.|+..+....+
T Consensus 90 viEID----Aa-s~rgVDdIR-eLIe~a~---------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 90 YVEMD----AA-SNRGVDEMA-ALLERAV---------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEEec----cc-ccccHHHHH-HHHHHHH---------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 11110 00 111111111 1111100 00012345578899998664 36666665544456
Q ss_pred CCeEEEEeCCccccc-ccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 001326 164 GSRIIITTRDKWILD-NFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTV 236 (1099)
Q Consensus 164 gsrIiiTTR~~~v~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 236 (1099)
..++|+||++.+... .. ......++++.++.++..+.+.+.+-..... .-.+..+.|++.++|..- |+..
T Consensus 149 ~v~FILaTtd~~KIp~TI-rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 149 HVKFILATTDPQKIPVTV-LSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CeEEEEEECChhhccchh-hhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 778888887764322 11 1222379999999999999998776433221 123556778888988653 4444
No 58
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=1.7e-06 Score=83.10 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=76.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRR 135 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 135 (1099)
+++.|.|+.|+||||++++++++.. .....+|+. .. ......... .+ ..+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~-----~~~~~~~~~---~~------------~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FD-----DPRDRRLAD---PD------------LLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cC-----CHHHHHHhh---hh------------hHHHHHHhhcc
Confidence 6889999999999999999998765 223344543 11 111100000 00 12333333444
Q ss_pred CeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccccC----CCCcceEecCCCCHHHH
Q 001326 136 MKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNFG----VHSSNIYEVNGLEYDEA 198 (1099)
Q Consensus 136 kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~----~~~~~~~~l~~L~~~ea 198 (1099)
++.+|+||+|....+|......+...++..+|++|+........-. ......+++.+|+..|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7789999999988888776666554456789999999876653210 11122689999998873
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.3e-05 Score=91.67 Aligned_cols=192 Identities=15% Similarity=0.120 Sum_probs=108.8
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|...++++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+.+.+....... . ...+.-...+
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~---~-------~pc~~c~~c~ 80 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT---S-------NPCRKCIICK 80 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC---C-------CCCCCCHHHH
Confidence 455678999999999999988643 2356778999999999999999998764221100 0 0000000000
Q ss_pred HHHHH----Hhcccccc-cCCChhHHHHHH-----hcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 108 RVLSE----IFEENIKI-ETPCLPEYIGER-----LRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 108 ~ll~~----l~~~~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
++... +..-+... ...+....+.+. ..+++-++|+|+++... .++.+...+....+..++|++|.+..
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~ 160 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChH
Confidence 00000 00000000 000001111111 12455689999998665 46666666555455667777765432
Q ss_pred -cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 176 -ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 176 -v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
+.... ......+++++++.++..+.+...+-..... --.+.+..|++.++|.|-.
T Consensus 161 ~l~~tI-~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 161 KIPKTI-LSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhhHHH-HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 32221 1112379999999999999888766432211 1124566788899998864
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=5.3e-06 Score=94.66 Aligned_cols=197 Identities=17% Similarity=0.118 Sum_probs=106.3
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-ce-eEEEEeccccccCCCCHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-EG-RCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 105 (1099)
|...+.++|++..++++..++..+ ..+.+.++|++|+||||+|+++.+.+.... .. .+++. ....... ....+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~~ 85 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKYL 85 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhhh
Confidence 444578999999999999988633 344578999999999999999999765332 22 22332 2111000 00000
Q ss_pred HH--HHHHHHhcccccccCCChhHHHHHHh---------cCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeC
Q 001326 106 RE--RVLSEIFEENIKIETPCLPEYIGERL---------RRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTR 172 (1099)
Q Consensus 106 ~~--~ll~~l~~~~~~~~~~~~~~~l~~~L---------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR 172 (1099)
.. .... ........ .......+++.+ ...+-+||+||++... ..+.+...+....+..++|+||.
T Consensus 86 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 86 VEDPRFAH-FLGTDKRI-RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred hcCcchhh-hhhhhhhh-ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 00 0000 00000000 000111122111 1334589999997553 23334333333345577888775
Q ss_pred Cc-ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 173 DK-WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 173 ~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
.. .+..... .....+++.+++.++..+++...+-..... --.+....++++++|.+-.+
T Consensus 164 ~~~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 164 QPSKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred ChhhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 43 2222221 112378999999999999988876433221 12356677888888876544
No 61
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=4e-05 Score=86.77 Aligned_cols=202 Identities=14% Similarity=0.067 Sum_probs=111.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEeccccccCCCCHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
.|+..+.++|.+...+.+.+.+..+ .-...+.++|+.|+||||+|.++.+.+-.+- .......... .. ...+...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l-~~~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SL-AIDPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cc-cCCCCCh
Confidence 4556678999999999999988643 2345688999999999999999998653221 0000000000 00 0000001
Q ss_pred HHHHHHHHHhc----------ccc----cccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCC
Q 001326 105 LRERVLSEIFE----------ENI----KIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGP 163 (1099)
Q Consensus 105 l~~~ll~~l~~----------~~~----~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 163 (1099)
..+.+...... +.. .....+.+..+.+.+ .+.+-++|+||++.. .....|...+....+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111100000 000 000111122222332 245678999999744 445555555444345
Q ss_pred CCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 164 GSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 164 gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
+..+|++|.+.. +.... ......+.+.+++.++..+++...... ..+ +....++..++|.|.....+.
T Consensus 171 ~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 666777776654 32222 222337999999999999999876421 111 122678999999998665543
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=6.2e-08 Score=113.28 Aligned_cols=147 Identities=28% Similarity=0.290 Sum_probs=65.7
Q ss_pred CCCCCCEEEccCCCCcccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCcc-ccCCCCCcEEE
Q 001326 638 KMEPLEKLALDRSGIKELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSS-IADLNKLRELC 716 (1099)
Q Consensus 638 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 716 (1099)
.+++|++|++++|.|+.+.. +..++.|+.|++++|.+... ..+..+++|+.+++++|.+..+... ...+.+|+.+.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELD 192 (414)
T ss_pred hhhcchheeccccccccccc-hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHh
Confidence 34444444444444444322 33344444444444443221 1223344555555555555544332 34455555555
Q ss_pred ccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCC--CCCEEEccCCCCccccccccCCCCCCEEeecCC
Q 001326 717 LSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLS--SLESLNLAENNFESLPSSISQLSCLRRLCLRNC 788 (1099)
Q Consensus 717 L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~--sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c 788 (1099)
+.+|.+..+..+..+..+..+++..|.++.+... ..+. .|+.+++++|.+..++..+..+..+..|++.++
T Consensus 193 l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l-~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 193 LGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGL-NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ccCCchhcccchHHHHHHHHhhcccccceeccCc-ccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 5555554444444444444444444444432211 1111 255555555555544444445555555555543
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1e-05 Score=98.19 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=111.9
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--c-eeEEEEec------------
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--E-GRCFVSNV------------ 92 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~-~~~~~~~~------------ 92 (1099)
|...+++||.+..++.|..++..+ .=...+.++|+.|+||||+|+.+++.+.... . ..|..+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 456688999999999999888633 2245568999999999999999998764321 0 00111000
Q ss_pred ccccc-CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEE
Q 001326 93 RVESE-NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIII 169 (1099)
Q Consensus 93 ~~~~~-~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIii 169 (1099)
.+... ...++..+ +++...+. .....+++-++|||+++.. +..+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDdI-ReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 00000 01122221 22222110 0112467789999999755 456676666554455667776
Q ss_pred EeCCc-ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 170 TTRDK-WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 170 TTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
+|.+. .+....- .....|++++++.++..+++.+.+-.... ....+..+.|++.++|.|--+
T Consensus 155 aTTe~~kLl~TIl-SRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 155 ATTDPQKLPVTVL-SRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred ECCCchhchHHHH-HhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 66554 3332211 11238999999999999999876633221 122356677999999988633
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.33 E-value=1.4e-05 Score=95.14 Aligned_cols=181 Identities=20% Similarity=0.168 Sum_probs=106.5
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC--CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG--FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
.|...++++|.+..++++.+|+..- ....+.+.|+|++|+||||+|+++++++. ++. +.+ +. + ......
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-na---s-d~r~~~- 79 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NA---S-DQRTAD- 79 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cc---c-ccccHH-
Confidence 3455678999999999999998631 12267889999999999999999999863 221 111 11 1 111111
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh------HHHHHhcCCCCCCCCCeEEEEeCCccccc
Q 001326 105 LRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG------QLKYLAGGIDRFGPGSRIIITTRDKWILD 178 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIiiTTR~~~v~~ 178 (1099)
...+++...... . .....++-+||+|+++... .+..+...+. ..+..||+|+.+..-..
T Consensus 80 ~i~~~i~~~~~~----~---------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 80 VIERVAGEAATS----G---------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHHhhcc----C---------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 222222221110 0 0011367799999997642 2444443332 23445666665432111
Q ss_pred --ccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 179 --NFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 179 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
.. ......+++++++.++....+...+......- -.+....|++.++|-.-.+
T Consensus 145 ~k~L-rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 145 LREL-RNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhhH-hccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 11 11123789999999999988887764333211 1356677888888876544
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.1e-05 Score=95.09 Aligned_cols=184 Identities=17% Similarity=0.123 Sum_probs=110.1
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc---------------------e
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE---------------------G 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~ 85 (1099)
.|...+++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.... .
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 34566889999999999999986432 2577789999999999999999887633210 0
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~ 163 (1099)
.+.+.. + ...++.++. +++.... .....+++-++|+|+|+... ....|...+....+
T Consensus 89 viEIDA----A-s~~~VddIR-eli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 89 LIEIDA----A-SRTKVEDTR-ELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred eEEecc----c-ccCCHHHHH-HHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111100 0 011111111 1111100 00113566688999998653 45566655544445
Q ss_pred CCeEEEEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 164 GSRIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 164 gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
+.++|++|.+..-....-......+++++++.++..+.+.+.+-+.... .-.+....|++.++|.+-.+
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 6788877766432211101222379999999999999888776433221 12245667888899877543
No 66
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.32 E-value=1.4e-05 Score=90.50 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|..-++++|++..++.+..++..+ ..+.+.++|.+|+||||+|+++.+.+........++. +. .+ ...+...+..
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~-~~~~~~~~~~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-AS-DERGIDVIRN 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cc-cccchHHHHH
Confidence 344467999999999999998643 3345789999999999999999997643321111221 10 01 1112221111
Q ss_pred HHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCc-ccccccCCCC
Q 001326 108 RVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDK-WILDNFGVHS 184 (1099)
Q Consensus 108 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~ 184 (1099)
.+.+.....+ . -...+-++|+|+++... ..+.+...+....+.+++|+++... .+..... ..
T Consensus 88 -~i~~~~~~~~-~------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~-sr 152 (319)
T PRK00440 88 -KIKEFARTAP-V------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ-SR 152 (319)
T ss_pred -HHHHHHhcCC-C------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH-HH
Confidence 1111111100 0 01235689999997553 3444444444444567777776433 2222111 11
Q ss_pred cceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 185 SNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 185 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
...+++++++.++...++...+-..... --.+....+++.++|.+--
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 2278999999999999988877543321 1134566788889988764
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.9e-05 Score=93.04 Aligned_cols=194 Identities=16% Similarity=0.096 Sum_probs=110.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc--cCceeEEEEeccccc--cCCCCH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW--EFEGRCFVSNVRVES--ENGHRL 102 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~--~~~~~~ 102 (1099)
.|...++++|.+..++.|..++..+. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.+...... ....++
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCce
Confidence 35566789999998888988886432 2456789999999999999999987642 222233322100000 000000
Q ss_pred HHHHHHHHHHHhcccccccCCChhHHHHHH-----hcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCC-c
Q 001326 103 VYLRERVLSEIFEENIKIETPCLPEYIGER-----LRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRD-K 174 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~ 174 (1099)
..+ ... .....+....+.+. ..+++-++|+|+++.. ..++.|...+....+...+|++|.. .
T Consensus 88 ~el--------~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 88 LEI--------DAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred EEe--------ccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 000 000 00000011112221 1245668899999855 4466666665544455566655543 3
Q ss_pred ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 175 WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 175 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
.+..... .....+++.+++.++..+++.+.+-...... -.+....|++.++|.+--+
T Consensus 158 kl~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3322221 1123799999999999999988775433211 2245677889999988543
No 68
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.4e-06 Score=89.94 Aligned_cols=50 Identities=30% Similarity=0.335 Sum_probs=35.7
Q ss_pred ccccchhhHHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 33 GLVGLSSRIEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.||||+++++++...+. ......+.+.|+|.+|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 234457999999999999999999999988766
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.30 E-value=9.7e-06 Score=91.16 Aligned_cols=184 Identities=14% Similarity=0.178 Sum_probs=106.2
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
.|..-++++|.+..++.|..++..+ ..+.+.++|++|+||||+|+++++.+.. .|...+.-.+. + +..+...+
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---s-d~~~~~~v 81 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---S-DDRGIDVV 81 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---c-ccccHHHH
Confidence 3555678999999888888887532 3344679999999999999999997633 23222211111 1 22233322
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCc-ccccccCC
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDK-WILDNFGV 182 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~ 182 (1099)
.. .+.......... -.++.-++|||+++... .-+.|........+.+++|+++... .+.....
T Consensus 82 r~-~i~~~~~~~~~~------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~- 147 (319)
T PLN03025 82 RN-KIKMFAQKKVTL------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ- 147 (319)
T ss_pred HH-HHHHHHhccccC------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH-
Confidence 22 222211110000 01346689999998653 3334443333334567777777543 2221111
Q ss_pred CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 183 HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 183 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
.....++++++++++..+.+...+-.....- -.+....|++.++|-.-
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMR 195 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 1112789999999999998887764332211 12456778888888664
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=6.7e-06 Score=80.97 Aligned_cols=123 Identities=19% Similarity=0.143 Sum_probs=70.1
Q ss_pred ccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 35 VGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 35 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+++++.+...-...+++. ..... ............
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~----~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLL----EGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhh----hhhHHHHHhhhh--
Confidence 47888899998888532 3467889999999999999999998753323333432 21111 000000000000
Q ss_pred cccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-----hHHHHHhcCCCCC---CCCCeEEEEeCCcc
Q 001326 115 EENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-----GQLKYLAGGIDRF---GPGSRIIITTRDKW 175 (1099)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gsrIiiTTR~~~ 175 (1099)
............++.+||+||++.. ..+.......... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999854 2233333333221 36778888888664
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.3e-05 Score=94.20 Aligned_cols=198 Identities=13% Similarity=0.072 Sum_probs=110.1
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc-eeEEEEeccccccCCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE-GRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 105 (1099)
.|...+++||-+..++.|.+.+..+. -.+.+.++|..|+||||+|+.+.+.+-..-. ..--+. + ...+.-.-
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~-~PCG~C~s 83 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----A-QPCGQCRA 83 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----C-CCCcccHH
Confidence 35566889999999999999986432 3466789999999999999999986643100 000000 0 00000000
Q ss_pred HHHHHH----HHhcccc-cccCCChhHHHHHH-----hcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCC
Q 001326 106 RERVLS----EIFEENI-KIETPCLPEYIGER-----LRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRD 173 (1099)
Q Consensus 106 ~~~ll~----~l~~~~~-~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 173 (1099)
.+.+.. ++..-+. .....+-...+.+. ..++.-++|||+++.. ...+.|+..+.....+.++|++|.+
T Consensus 84 C~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 011100 0000000 00000001111111 1355668999999865 4567777666554556666655544
Q ss_pred -cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 174 -KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 174 -~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
..+.... ......|.++.++.++..+.+.+.+-...... ..+..+.|++.++|.|.-.
T Consensus 164 p~kLlpTI-rSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 164 PQKIPVTV-LSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hHhhhhHH-HHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 4443222 11123799999999999998887664322211 1244577899999999643
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=8.3e-06 Score=97.05 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc---------------------e
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE---------------------G 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~ 85 (1099)
.|...+++||.+..++.|..++..+ .-.+.+.++|..|+||||+|+.+...+...-. .
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 3556689999999999999998743 22467789999999999999999886532210 0
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChhH--HHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVGQ--LKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~ 163 (1099)
.+.+.. . ...++..+ ++++.... ..-..+++-++|||+++.... ...|+..+.....
T Consensus 90 vlEida----A-s~~gVd~I-Relle~a~---------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~ 148 (709)
T PRK08691 90 LLEIDA----A-SNTGIDNI-REVLENAQ---------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (709)
T ss_pred eEEEec----c-ccCCHHHH-HHHHHHHH---------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCC
Confidence 000000 0 11111111 11111000 000124566899999986543 4445444433345
Q ss_pred CCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 164 GSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 164 gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
..++|++|.+.. +.... ......++++.++.++..+.+.+.+-+.... .-.+....|++.++|.+.-+
T Consensus 149 ~v~fILaTtd~~kL~~TI-rSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 149 HVKFILATTDPHKVPVTV-LSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CcEEEEEeCCccccchHH-HHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHH
Confidence 567777775543 22111 1111268889999999999888776433221 12245677899999988543
No 73
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.1e-05 Score=88.32 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc------cCceeEEEEeccccccCCCCHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW------EFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
++++|.+..++++...+..+ .-.+...++|+.|+||||+|+++++.+.. +.|...|.. . ......+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~---~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I---NKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c---cCCCCCHHHH
Confidence 56889998899999998633 23567789999999999999999986532 223222321 0 1022233332
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCC--ChhHHHHHhcCCCCCCCCCeEEEEeCCcccc-cccCC
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVN--KVGQLKYLAGGIDRFGPGSRIIITTRDKWIL-DNFGV 182 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~~~ 182 (1099)
. ++...+... ...+++=++|+|+++ +.+.++.|...+....+++.+|++|.+.+.. ... .
T Consensus 79 r-~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI-~ 141 (313)
T PRK05564 79 R-NIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI-K 141 (313)
T ss_pred H-HHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH-H
Confidence 2 222221110 012334455566664 5567888888877767788998888665432 211 1
Q ss_pred CCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 183 HSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 183 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.....+++.++++++....+.....+ . . .+.++.++.+++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~--~-~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND--I-K---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC--C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 11237999999999998888655321 1 1 234667899999999765443
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.6e-05 Score=91.29 Aligned_cols=193 Identities=13% Similarity=0.078 Sum_probs=108.5
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc---eeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE---GRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|...+++||-+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+...-. ..|..+ ..-.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C---------~sC~ 82 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC---------TSCL 82 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC---------cHHH
Confidence 35566889999999999999886432 2346789999999999999999987643211 001110 0000
Q ss_pred HHHHHHHHHHhcccc-cccCCChhHHHHH-----HhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEe-CCc
Q 001326 104 YLRERVLSEIFEENI-KIETPCLPEYIGE-----RLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITT-RDK 174 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~-~~~~~~~~~~l~~-----~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~ 174 (1099)
.+......++..-+. .....+....+.+ ...++.-++|+|+++.. +.++.|+..+........+|.+| ...
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 000000000000000 0000001111111 12356678999999855 45777776665433455555444 434
Q ss_pred ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 175 WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 175 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
.+..... .....|.+.+++.++..+++.+.+-.... .--.+....|++.++|.+-
T Consensus 163 kI~~TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 163 KIPETIL-SRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hccHHHH-hhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 4433221 12227999999999999888877643221 1123556779999999885
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-07 Score=110.23 Aligned_cols=213 Identities=27% Similarity=0.261 Sum_probs=134.3
Q ss_pred CccEEEecCcCCcccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccC
Q 001326 570 NVVELKLFNTPIEEVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDR 649 (1099)
Q Consensus 570 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 649 (1099)
.++.+.+..+.+..+-..+..+++|..|++.+|.+.+... .+..+++|++|++++|.+...- .+..++.|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheecc
Confidence 3445556666666655556777777777777776544322 2566777777777777665542 244555677777777
Q ss_pred CCCcccCcccccCCCCcEEEccCCCCCCccc-ccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCC
Q 001326 650 SGIKELPSSIENLEGLKELQLMCCSKLGSLP-ESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPL 728 (1099)
Q Consensus 650 ~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l 728 (1099)
|.++.+.. +..+++|+.+++++|.....-+ . ...+.+|+.+++.+|.+..+. .+..+..+..+++..|.+..+.++
T Consensus 150 N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l 226 (414)
T KOG0531|consen 150 NLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGL 226 (414)
T ss_pred CcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCc
Confidence 77776643 4457777777777777654433 2 466677777777777776552 233344444556677776666665
Q ss_pred CCCCC--CCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCC
Q 001326 729 STLSS--LRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 729 ~~l~~--L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 789 (1099)
..+.. |+.+++++|.+...+..+..+..+..|++.+|.+..+. .+...+.+..+....++
T Consensus 227 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 227 NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNK 288 (414)
T ss_pred ccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcch
Confidence 55555 77777777777776666677777777777777666443 33444455555555543
No 76
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.2e-06 Score=71.78 Aligned_cols=58 Identities=40% Similarity=0.568 Sum_probs=45.3
Q ss_pred CCCCEEeccCCCCccccc-ccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCC
Q 001326 732 SSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAENNFESLPS-SISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 732 ~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 789 (1099)
|+|++|++++|.+..+|. .+.++++|++|++++|+++.+|. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467788888888887775 47778888888888888887764 56788888888888875
No 77
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=2.4e-06 Score=104.58 Aligned_cols=103 Identities=26% Similarity=0.394 Sum_probs=50.5
Q ss_pred cEEeccCCCCCCccchhhcCCCCCCEEEccCCCCc-ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCC
Q 001326 619 RCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIK-ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRS 697 (1099)
Q Consensus 619 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~ 697 (1099)
+.|+|++|...+.+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|...+.+|..++++++|+.|++++|
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 33344444444444444444444444444444443 44444445555555555555555555555555555555555555
Q ss_pred CCc-cCCccccC-CCCCcEEEccCCC
Q 001326 698 AIL-QLPSSIAD-LNKLRELCLSGCR 721 (1099)
Q Consensus 698 ~i~-~lp~~~~~-l~~L~~L~L~~~~ 721 (1099)
.+. .+|..+.. +.++..+++.+|.
T Consensus 501 ~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 501 SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccccCChHHhhccccCceEEecCCc
Confidence 544 34444443 2345566777665
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.19 E-value=2.1e-05 Score=83.93 Aligned_cols=168 Identities=17% Similarity=0.136 Sum_probs=93.9
Q ss_pred CCccccchh-hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHH
Q 001326 31 FKGLVGLSS-RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 31 ~~~~vGr~~-~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
.+.||+-.+ .+..+..+.. + .....+.|+|.+|+|||+||+++++....+.....|+.. ......+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-----------~~~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-----------QAAAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-----------HHhhhhH
Confidence 345665443 3444444332 1 223458999999999999999999987666555566641 1111111
Q ss_pred HHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---HHH-HHhcCCCC-CCCCCeEEEEeCCcc---------
Q 001326 110 LSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---QLK-YLAGGIDR-FGPGSRIIITTRDKW--------- 175 (1099)
Q Consensus 110 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gsrIiiTTR~~~--------- 175 (1099)
. +.+ +.+ .+.-+|||||++... .++ .+...+.. ...|..||+|++...
T Consensus 85 ~----------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 85 R----------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H----------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 0 111 111 123489999996432 232 22222211 134667999998531
Q ss_pred cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 176 ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 176 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
+...+.. ...+++++++.++-.+++.+++..... .--.+...-+++.+.|-.-.
T Consensus 147 L~SRl~~--~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 147 LRSRLAQ--CIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHHHhc--CceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHH
Confidence 1111111 227899999999999999987753221 11124455566666655443
No 79
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=1.8e-06 Score=94.64 Aligned_cols=260 Identities=21% Similarity=0.211 Sum_probs=167.5
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER 132 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 132 (1099)
...|-+.++|.|||||||++-.+.. ++..|....++.+..... +...+.-.+...+.-...+ .......+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pit----D~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPIT----DPALVFPTLAGALGLHVQP--GDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccC----chhHhHHHHHhhccccccc--chHHHHHHHHH
Confidence 3568999999999999999999999 888888877776665444 1112222222222211111 01135566777
Q ss_pred hcCCeEEEEEeCCCChhH-HHHHhcCCCCCCCCCeEEEEeCCcccccccCCCCcceEecCCCCHH-HHHHHHhhhhcCCC
Q 001326 133 LRRMKVLIVLDDVNKVGQ-LKYLAGGIDRFGPGSRIIITTRDKWILDNFGVHSSNIYEVNGLEYD-EARELFCNYAFKEN 210 (1099)
Q Consensus 133 L~~kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~ 210 (1099)
..++|.++|+||-.+..+ -..+...+....+.-+|+.|+|.... +.....+.++.|+.. ++.++|...+..-.
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l-----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL-----VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc-----ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 889999999999865532 22233333333556688999997743 222237888888875 79999987764211
Q ss_pred C---CChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHHHHHHHH----HHhcC------CCchhHHHHhhcccCCCh
Q 001326 211 H---CPDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPDWEKALE----KINRI------SDPDIYDVLKISYNDLRP 277 (1099)
Q Consensus 211 ~---~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~ 277 (1099)
. ....-.....+|.+...|.|+++...++..+.....+--+.+. .+... ........+..||--|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1 1123345677899999999999999999888766555444443 22222 123456678899999999
Q ss_pred hhhhHHhhhccccccchHhHHHHHh-cCC----Cc-hhhhHHHHhhccceEEe
Q 001326 278 EEKSIFLDIACFVVGEEKDFVTSIL-EDP----NI-AHYGLSVLIERSLVTIS 324 (1099)
Q Consensus 278 ~~k~~fl~la~f~~~~~~~~~~~~l-~~~----~~-~~~~l~~L~~~sLi~~~ 324 (1099)
.++..|.-++.|...++.+.....- ... .+ ....+..+++++++...
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9999999999998877665322221 111 11 34456778888887654
No 80
>PTZ00202 tuzin; Provisional
Probab=98.19 E-value=1.4e-05 Score=88.70 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=102.6
Q ss_pred CCCCCCccccchhhHHHHHHhhcC-CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV-GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
.|.+...|+||+.++.+|...|.. +....+++.|.|++|+|||||++.+..... ...++.|. .+..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHH
Confidence 366778999999999999999963 333457999999999999999999997654 23565533 366889
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHh-----c-CCeEEEEEeCC--CChh----HHHHHhcCCCCCCCCCeEEEEeCC
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERL-----R-RMKVLIVLDDV--NKVG----QLKYLAGGIDRFGPGSRIIITTRD 173 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVLDdv--~~~~----~~~~l~~~~~~~~~gsrIiiTTR~ 173 (1099)
.+.++.++...... ...++.+.|.+.+ . +++.+||+-== .+.. +.-.|+. ...-+.|++----
T Consensus 326 Lr~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~----drr~ch~v~evpl 400 (550)
T PTZ00202 326 LRSVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALAC----DRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHc----cchhheeeeeehH
Confidence 99999998863221 1122344444333 2 67777777422 2221 1111221 1234566654433
Q ss_pred ccccc-ccCCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 174 KWILD-NFGVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 174 ~~v~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
+.+-. ....+.-..|.++.++.++|.++-.+..
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 32211 1112222379999999999998876543
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3e-05 Score=87.22 Aligned_cols=198 Identities=15% Similarity=0.116 Sum_probs=113.3
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc----CceeEEEEeccccccCCCCH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE----FEGRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 102 (1099)
.|.....++|-+...+.+...+..+ .-...+.|+|..|+||||+|+.+...+-.. +...... ...+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~--------~~~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA--------DPDPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC--------CCCCC
Confidence 4666788999999999999998643 235578899999999999999999876442 1111000 00101
Q ss_pred HHHHHHHHHH-------Hhcc-ccc------ccCCChhHHHHHHh-----cCCeEEEEEeCCCChh--HHHHHhcCCCCC
Q 001326 103 VYLRERVLSE-------IFEE-NIK------IETPCLPEYIGERL-----RRMKVLIVLDDVNKVG--QLKYLAGGIDRF 161 (1099)
Q Consensus 103 ~~l~~~ll~~-------l~~~-~~~------~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~ 161 (1099)
....+.+... +... +.+ ....+.+..+.+.+ .+++-++|+|+++... ..+.|...+...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 1112222111 0000 000 00111222333333 2456689999998553 345555444433
Q ss_pred CCCCeEE-EEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 162 GPGSRII-ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 162 ~~gsrIi-iTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
.....+| +|++...+..... .....+++.+++.++..+++...+.... ...+.+..+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIr-SRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIR-SRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHH-hhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445544 5544444433221 1223899999999999999987432211 113456789999999998655443
No 82
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=4.1e-06 Score=80.91 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=70.9
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhcc-----CceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCC-hhH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWE-----FEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPC-LPE 127 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~ 127 (1099)
+.+++.|+|.+|+|||++++.+.+....+ -...+|+. . . .......+.+.++.++........... ..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C---P-SSRTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H---H-HHSSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e---C-CCCCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 35788999999999999999999976543 23344553 2 1 223678889999988877655522222 456
Q ss_pred HHHHHhcCC-eEEEEEeCCCCh---hHHHHHhcCCCCCCCCCeEEEEeCC
Q 001326 128 YIGERLRRM-KVLIVLDDVNKV---GQLKYLAGGIDRFGPGSRIIITTRD 173 (1099)
Q Consensus 128 ~l~~~L~~k-r~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~ 173 (1099)
.+.+.+... ..+||+||++.. +.++.+..-.. ..+.+||+..++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 666666644 459999999766 33444533333 566788887776
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.2e-08 Score=101.18 Aligned_cols=169 Identities=23% Similarity=0.280 Sum_probs=104.0
Q ss_pred CCCEEEccCCCCc--ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCC-Ccc--CCccccCCCCCcEE
Q 001326 641 PLEKLALDRSGIK--ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSA-ILQ--LPSSIADLNKLREL 715 (1099)
Q Consensus 641 ~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L 715 (1099)
.|++|||+...++ .+-..+..+..|+.|.|.|+.....+...+..-.+|+.|+++.|. +++ +.-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3556666655554 333334555666666666666555555555666666666666553 222 12345667777777
Q ss_pred EccCCCCCCCCC----CCCCCCCCEEeccCCCCc----ccccccCCCCCCCEEEccCCC-Cc-cccccccCCCCCCEEee
Q 001326 716 CLSGCRGFALPP----LSTLSSLRTLTLSGCGII----EISQDICCLSSLESLNLAENN-FE-SLPSSISQLSCLRRLCL 785 (1099)
Q Consensus 716 ~L~~~~~~~l~~----l~~l~~L~~L~Ls~~~l~----~l~~~~~~l~sL~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L 785 (1099)
+|+.|......- -.--++|+.|+|+||.-. .+..-...+|+|..|||+.|. ++ ..-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777776543221 112357788888887432 233234568889999998874 33 34446778899999999
Q ss_pred cCCCCCCCCCC------CCCCCCeeecccCcC
Q 001326 786 RNCNMLQSLPE------LPLGLRHLEASNCKR 811 (1099)
Q Consensus 786 ~~c~~l~~lp~------l~~sL~~L~i~~c~~ 811 (1099)
+.|-.+ +|+ ..|+|.+|++.+|-+
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 998654 232 347899999998854
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.9e-05 Score=90.06 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=109.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc-------eeEEEEe--------
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE-------GRCFVSN-------- 91 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~~-------- 91 (1099)
.|....++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-. ..|..+.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~ 94 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNH 94 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcC
Confidence 3556678999999999988877533 22467789999999999999999987633210 0011100
Q ss_pred ----ccccc-cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCC
Q 001326 92 ----VRVES-ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPG 164 (1099)
Q Consensus 92 ----~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 164 (1099)
+.+.. ....++..+.. ++.... .....+++-++|+|+++.. ..++.|...+....+.
T Consensus 95 ~h~Dv~eidaas~~~vd~Ir~-iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDIRR-IIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCCcEEEeeccCCCCHHHHHH-HHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 00000 01112222111 111100 0012356678999999865 4577776665544556
Q ss_pred CeEEE-EeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 165 SRIII-TTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 165 srIii-TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
+.+|+ ||+...+...... ....+++++++.++..+++.+.+-.....- -.+....|++.++|.+--
T Consensus 159 ~vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 159 IIFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 66664 4444444333211 123799999999999999988875433211 124456688889987743
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4e-05 Score=90.50 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=107.6
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC---------------------cee
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF---------------------EGR 86 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 86 (1099)
|...+++||-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 456678999999999999888633 2345677999999999999999998654311 111
Q ss_pred EEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCC
Q 001326 87 CFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPG 164 (1099)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 164 (1099)
..+. . . ...++..+ ++++..+. .....+++-++|+|+++.. ...+.|...+......
T Consensus 91 ieid-a---a-s~~gvd~i-r~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID-A---A-SRTGVEET-KEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee-c---c-cccCHHHH-HHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 0 0 11122111 11111110 0012356679999999855 3466666665544456
Q ss_pred CeEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001326 165 SRIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTVL 237 (1099)
Q Consensus 165 srIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 237 (1099)
+.+|++|.+ ..+.... ......+++++++.++..+.+.+.+-.... +.-.+....|++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI-~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTI-LSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhH-HHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666655543 3333221 112238999999999988888765432221 1122445668888888664 44443
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=3.9e-06 Score=102.76 Aligned_cols=105 Identities=25% Similarity=0.286 Sum_probs=76.1
Q ss_pred CcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCc-ccCcccccCCCCcEEEccC
Q 001326 594 LKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIK-ELPSSIENLEGLKELQLMC 672 (1099)
Q Consensus 594 L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~ 672 (1099)
++.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|..+..+++|+.|+|++|.+. .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777777777777777777777777777777777777777777777777777776 5677777777777777777
Q ss_pred CCCCCcccccccCC-CCCceeecCCCC
Q 001326 673 CSKLGSLPESLGNL-KSLVVLDANRSA 698 (1099)
Q Consensus 673 ~~~l~~lp~~l~~l-~~L~~L~l~~~~ 698 (1099)
|.+.+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777777766553 355667776664
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.16 E-value=2e-05 Score=84.18 Aligned_cols=176 Identities=17% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCCccc-cchhhH-HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 30 DFKGLV-GLSSRI-EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 30 ~~~~~v-Gr~~~~-~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
..++|+ |..... ..+.++.. .....+.+.|+|..|+|||+||+++++.....-....|+... . ...
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~--------~---~~~ 83 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA--------S---PLL 83 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH--------H---hHH
Confidence 345555 554444 34445443 223346788999999999999999999764332334444311 0 000
Q ss_pred HHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCC-CCCC-eEEEEeCCccccccc---
Q 001326 108 RVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRF-GPGS-RIIITTRDKWILDNF--- 180 (1099)
Q Consensus 108 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~-~~gs-rIiiTTR~~~v~~~~--- 180 (1099)
.+ .. ....-+||+||++... +.+.+...+... ..|. .||+|++........
T Consensus 84 ~~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 00 1123478899996442 222332222111 2344 366666643211111
Q ss_pred ---CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001326 181 ---GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFF 241 (1099)
Q Consensus 181 ---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 241 (1099)
.......++++++++++-..++.+.+-+... .--.+....+++...|.+..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 0111137899999998877777654422211 1122456667778888888776665543
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=7.9e-08 Score=104.00 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=44.8
Q ss_pred CccEEeccCCCCCCcCCC---CCCCCCccEEEeeCCCCCCcc--CccccCCCCCCEEEcCCCCCcccCCCC-C--CCCCC
Q 001326 479 KLKSIDLHQSHNLTRIPK---QSEAPNLERINLWNCKNLLYI--PSHIQNFNNLSMLSLRDCISLSCFPRN-I--HFRSP 550 (1099)
Q Consensus 479 ~L~~L~Ls~~~~l~~~~~---~~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~L~~~~~l~~lp~~-~--~l~~L 550 (1099)
.|+.|.+.++.....-+- ...+||+++|.+.+|..++.. -..-..+.+|++|++..|..++...-. + .+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577777777765443222 266777777777777644321 111234667777777766555432211 1 34455
Q ss_pred cEEEccCCcCC
Q 001326 551 VKIDFSGCVNL 561 (1099)
Q Consensus 551 ~~L~l~~~~~l 561 (1099)
++++++.|+.+
T Consensus 219 ~~lNlSwc~qi 229 (483)
T KOG4341|consen 219 KYLNLSWCPQI 229 (483)
T ss_pred HHhhhccCchh
Confidence 55555555443
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.15 E-value=4.9e-05 Score=81.10 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRR 135 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 135 (1099)
..+.|||..|+|||.||+++++.+..+-..++|+.. ..+... ...+.+.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----------~~~~~~-----------------~~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----------AELLDR-----------------GPELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----------HHHHhh-----------------hHHHHHhhhh
Confidence 678899999999999999999977655445666641 111110 0112233333
Q ss_pred CeEEEEEeCCCCh---hHHHH-HhcCCCC-CCCCCeEEEEeCCccc-cccc-C-----CCCcceEecCCCCHHHHHHHHh
Q 001326 136 MKVLIVLDDVNKV---GQLKY-LAGGIDR-FGPGSRIIITTRDKWI-LDNF-G-----VHSSNIYEVNGLEYDEARELFC 203 (1099)
Q Consensus 136 kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gsrIiiTTR~~~v-~~~~-~-----~~~~~~~~l~~L~~~ea~~Lf~ 203 (1099)
-. ++|+||++.. .+|+. +...++. ...|.+||+|++...- .... . .....+++++++++++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 33 6788999633 34433 3333222 2356789998875421 1110 0 0112378999999999999998
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 204 NYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
.++...... --.+...-+++++.|..-++.
T Consensus 177 ~ka~~~~~~--l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 177 LRASRRGLH--LTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 666432211 112455556666666654443
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=5.5e-05 Score=86.36 Aligned_cols=179 Identities=11% Similarity=0.068 Sum_probs=105.3
Q ss_pred CCccccchhhHHHHHHhhcCCCC--------CEEEEEEEcCCCCcHHHHHHHHHHHHhccCc------------------
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFP--------DFRIVGIWGMAGIGKTTLAGAIFNLISWEFE------------------ 84 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------------------ 84 (1099)
.+.++|-+..++.|.+.+..+.. -.+.+.++|+.|+||||+|+.+.+.+-....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35789999999999999875421 2567889999999999999999886533211
Q ss_pred --eeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCC
Q 001326 85 --GRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDR 160 (1099)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~ 160 (1099)
...++.. .. ...++.++. ++...... ....+++-++|+|+++... ....|...+..
T Consensus 84 hpD~~~i~~---~~-~~i~i~~iR-~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVAP---EG-LSIGVDEVR-ELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEecc---cc-ccCCHHHHH-HHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 0111110 00 111111111 11111100 0012344577889998553 34555555544
Q ss_pred CCCCCeEEEEeCCc-ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 161 FGPGSRIIITTRDK-WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 161 ~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
..++..+|++|.+. .+..... .....+.+++++.++..+.+..... .+ .+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~~---~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRDG---VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhcC---CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 45567666666554 3332321 1123799999999999988874421 11 245677899999999755444
No 91
>PF14516 AAA_35: AAA-like domain
Probab=98.14 E-value=0.00061 Score=76.74 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=148.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc-CCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE-NGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l 105 (1099)
.+.+.+..|.|...-+++.+.+... -..+.|.|+-.+|||+|..++.+..+.+--.++++. ...... ...+....
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 3556678889995556666666432 248889999999999999999998765433344553 333221 22345555
Q ss_pred HHHHHHHHhcccc-----------cccCC-ChhHHHHHHh---cCCeEEEEEeCCCChhH----HHHHhcCCC-CCC---
Q 001326 106 RERVLSEIFEENI-----------KIETP-CLPEYIGERL---RRMKVLIVLDDVNKVGQ----LKYLAGGID-RFG--- 162 (1099)
Q Consensus 106 ~~~ll~~l~~~~~-----------~~~~~-~~~~~l~~~L---~~kr~LlVLDdv~~~~~----~~~l~~~~~-~~~--- 162 (1099)
.+.+...+...-. ..... .....+.+.+ .+++++|+||+|+..-. .+.+.+.+. |..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555554433210 01111 1334444432 26899999999974421 112221110 110
Q ss_pred ----CCCeEEEEeCCcc--cc-cc----cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 163 ----PGSRIIITTRDKW--IL-DN----FGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 163 ----~gsrIiiTTR~~~--v~-~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
...-.+|..+... .. .. ..+. ..+++++++.+|...|...+-.. . .+ ...++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg--~~i~L~~Ft~~ev~~L~~~~~~~--~-~~---~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIG--QPIELPDFTPEEVQELAQRYGLE--F-SQ---EQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccc--cceeCCCCCHHHHHHHHHhhhcc--C-CH---HHHHHHHHHHCCCH
Confidence 0111122222111 11 11 1222 26899999999999999877432 1 11 23888999999999
Q ss_pred hHHHHHhhhcCCCCHHHHHHHHHHHhcCCCchhHHHHhhcccCCChhhhhHHhhhccccccchHhHHHHHhcCCCc---h
Q 001326 232 LALTVLGSFFHQKSKPDWEKALEKINRISDPDIYDVLKISYNDLRPEEKSIFLDIACFVVGEEKDFVTSILEDPNI---A 308 (1099)
Q Consensus 232 Lal~~lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~~~~~l~~~~~---~ 308 (1099)
.-+..++..+..... ..+.+++.-.... .+. +++.+.+...+.-- ..-.+.+.+++.+... .
T Consensus 234 ~Lv~~~~~~l~~~~~-~~~~l~~~a~~~~--~~~----------~~hL~~l~~~L~~~--~~L~~~~~~il~~~~~~~~~ 298 (331)
T PF14516_consen 234 YLVQKACYLLVEEQI-TLEQLLEEAITDN--GIY----------NDHLDRLLDRLQQN--PELLEAYQQILFSGEPVDLD 298 (331)
T ss_pred HHHHHHHHHHHHccC-cHHHHHHHHHHhc--ccH----------HHHHHHHHHHHccC--HHHHHHHHHHHhCCCCcccC
Confidence 999999998865311 1222222111000 010 12223332222000 0112233344443322 3
Q ss_pred hhhHHHHhhccceEEecCCeEEeh
Q 001326 309 HYGLSVLIERSLVTISKFNKIEMH 332 (1099)
Q Consensus 309 ~~~l~~L~~~sLi~~~~~~~~~mH 332 (1099)
......|...|||... ++.+..+
T Consensus 299 ~~~~~~L~~~GLV~~~-~~~~~~~ 321 (331)
T PF14516_consen 299 SDDIYKLESLGLVKRD-GNQLEVR 321 (331)
T ss_pred hHHHHHHHHCCeEEEe-CCEEEEE
Confidence 4457789999999998 7777665
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=4.7e-05 Score=91.31 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=109.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
.|...+++||-+..++.|...+..+. -...+.++|..|+||||+|+.+...+-..... . . ...+.-...
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~-----~-~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----T-----A-TPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----C-----C-CCCCCCHHH
Confidence 35567899999999999998886432 24567899999999999999998865432100 0 0 000100111
Q ss_pred HHHHHH----Hhccccc-ccCCChhHHHHHH-----hcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 107 ERVLSE----IFEENIK-IETPCLPEYIGER-----LRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 107 ~~ll~~----l~~~~~~-~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
+++... +..-+.. ....+-...+.+. ..+++-++|||+++... ..+.|+..+....+..++|++|.+.
T Consensus 80 ~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 111100 0000000 0000001111111 23567789999998553 5666655554444556666555544
Q ss_pred -ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 175 -WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 175 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
.+..... .....|.+++++.++..+.+.+.+-...... ..+....|++.++|.+--+
T Consensus 160 ~kLl~TI~-SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 160 QKLPVTIL-SRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDA 217 (647)
T ss_pred cccchHHH-hhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3432221 1123899999999999999887653222111 1244567899999988643
No 93
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2.3e-06 Score=70.06 Aligned_cols=58 Identities=34% Similarity=0.492 Sum_probs=40.4
Q ss_pred CCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc-ccCCCCCCCEEEccCCCC
Q 001326 710 NKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ-DICCLSSLESLNLAENNF 767 (1099)
Q Consensus 710 ~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~-~~~~l~sL~~L~L~~n~l 767 (1099)
|+|++|++++|.+..+++ +.++++|++|++++|.+..+++ .|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666665553 6677777777777777777655 477788888888888764
No 94
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.6e-08 Score=98.97 Aligned_cols=176 Identities=22% Similarity=0.183 Sum_probs=87.3
Q ss_pred CccEEEecCcCCc--ccCccccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccc--hhhcCCCCCCEE
Q 001326 570 NVVELKLFNTPIE--EVPSSIESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFP--EILEKMEPLEKL 645 (1099)
Q Consensus 570 ~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L 645 (1099)
.++.|+|++..|+ .+..-+..+.+|+.|.|.++.+...+-..+.+-.+|+.|+|+.|+...... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555555555554 233335556667777777666666665666666667777777666655432 234555666666
Q ss_pred EccCCCCcc--cCccccc-CCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCC
Q 001326 646 ALDRSGIKE--LPSSIEN-LEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRG 722 (1099)
Q Consensus 646 ~L~~~~l~~--lp~~l~~-l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 722 (1099)
+|++|.+.. +...+.. -++|+.|+|+||...-. ...+......+|+|.+|||++|..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--------------------~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--------------------KSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh--------------------hhHHHHHHHhCCceeeeccccccc
Confidence 666654431 1111111 13455555555542100 001111223455555555555542
Q ss_pred CCC---CCCCCCCCCCEEeccCCCCc--ccccccCCCCCCCEEEccCC
Q 001326 723 FAL---PPLSTLSSLRTLTLSGCGII--EISQDICCLSSLESLNLAEN 765 (1099)
Q Consensus 723 ~~l---~~l~~l~~L~~L~Ls~~~l~--~l~~~~~~l~sL~~L~L~~n 765 (1099)
... ..+..++.|++|.++.|... +.--.+...|+|.+|++.|+
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 221 11445555666666655433 11223455666666666665
No 95
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5e-05 Score=88.88 Aligned_cols=188 Identities=15% Similarity=0.115 Sum_probs=106.1
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc----Cc-----------------e
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE----FE-----------------G 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~-----------------~ 85 (1099)
.|...+++||.+...+.|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~d 87 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD 87 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCc
Confidence 45566889999888788888775332 23567899999999999999998865321 00 0
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 163 (1099)
...+. . + ...++..+. ++...... ....+++-++|+|+++.. ++.+.|...+....+
T Consensus 88 v~el~-a---a-~~~gid~iR-~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 88 VIELD-A---A-SNRGIDEIR-KIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred cEEEe-C---c-ccCCHHHHH-HHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11110 0 0 112222221 11111100 012346679999999765 345556555544333
Q ss_pred CCeEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 001326 164 GSRIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGN-PLALTVLGS 239 (1099)
Q Consensus 164 gsrIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~lg~ 239 (1099)
...+|++|.+ ..+..... .....+++.+++.++....+...+...... --.+....|+++++|- +.|+..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444444433 33333221 122379999999999999888876432211 1124556677777654 566655544
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=6.7e-05 Score=86.25 Aligned_cols=185 Identities=13% Similarity=0.106 Sum_probs=110.0
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc----Cce-----------------e
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE----FEG-----------------R 86 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~-----------------~ 86 (1099)
|...+.++|.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.+...+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4456789999999999999886432 24577899999999999999999876422 100 1
Q ss_pred EEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCC
Q 001326 87 CFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPG 164 (1099)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 164 (1099)
.++.. . ...+... .+++...+.. ....+++-++|+|+++.. ...+.+...+....+.
T Consensus 89 ~~~~~----~-~~~~~~~-~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDA----A-SNNGVDD-IREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeec----c-ccCCHHH-HHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 11110 0 0011111 1122221110 001234558889999755 4456665555444456
Q ss_pred CeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 165 SRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 165 srIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
+.+|++|.+.. +..... .....+++.+++.++..+++...+-.....- -.+.+..+++.++|.|..+...
T Consensus 148 ~~lIl~~~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 148 VVFILATTEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEEeCCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHH
Confidence 67777765443 222211 1112789999999999999988764332211 1256677889999988655433
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.11 E-value=2.7e-05 Score=82.93 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=91.5
Q ss_pred CCCCCCccccchhhHHH---HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEK---LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|..-++.||.+..+-+ |.+++ +.+....+.+||++|+||||||+.+...-+.+- ..|+... . ......
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelS-A---t~a~t~ 204 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELS-A---TNAKTN 204 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEe-c---cccchH
Confidence 34445667777655533 33444 355677777999999999999999998654431 2344321 1 122222
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCC--ChhHHHHHhcCCCCCCCCCeEEE--EeCCcccccc
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVN--KVGQLKYLAGGIDRFGPGSRIII--TTRDKWILDN 179 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~~ 179 (1099)
.+ +.+.++-. =...+.++|.+|.+|.|. +..|-+.+++.. ..|..++| ||.+....-.
T Consensus 205 dv-R~ife~aq--------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln 266 (554)
T KOG2028|consen 205 DV-RDIFEQAQ--------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLN 266 (554)
T ss_pred HH-HHHHHHHH--------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchh
Confidence 22 22222211 112346789999999995 444555555443 56777665 7777654221
Q ss_pred cC-CCCcceEecCCCCHHHHHHHHhhh
Q 001326 180 FG-VHSSNIYEVNGLEYDEARELFCNY 205 (1099)
Q Consensus 180 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 205 (1099)
.. .....++.++.|+.++...++.+.
T Consensus 267 ~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 267 AALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHHHhccceeEeccCCHHHHHHHHHHH
Confidence 11 122238999999999999988773
No 98
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=6.8e-08 Score=110.62 Aligned_cols=181 Identities=25% Similarity=0.243 Sum_probs=129.4
Q ss_pred CccccCCCCCcEEEeCCcccccccccccccC-ccccEEeccCCCCCCccchhh----cC------CCCCCEEEccCCCCc
Q 001326 585 PSSIESLPNLKILNLGFCKRLKRVSTGICKL-KYLRCLYLLDCSDLESFPEIL----EK------MEPLEKLALDRSGIK 653 (1099)
Q Consensus 585 p~~i~~l~~L~~L~L~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~~~l----~~------l~~L~~L~L~~~~l~ 653 (1099)
|-.+..+..|+.|.+.+|.+.. -.++..+ ..|++|.-.+ .+..+-+.| +. ...|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567778889999999887544 1112221 1233333221 111111111 11 235777788889998
Q ss_pred ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCC
Q 001326 654 ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSS 733 (1099)
Q Consensus 654 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~ 733 (1099)
.+..++.-++.|+.|+|++|+....- .+..++.|++|||++|.+..+|..-..-..|+.|.|++|.+.++-.+.++.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKS 255 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhh
Confidence 88889999999999999999876653 6888999999999999999888643333349999999999999999999999
Q ss_pred CCEEeccCCCCccccc--ccCCCCCCCEEEccCCCCcccc
Q 001326 734 LRTLTLSGCGIIEISQ--DICCLSSLESLNLAENNFESLP 771 (1099)
Q Consensus 734 L~~L~Ls~~~l~~l~~--~~~~l~sL~~L~L~~n~l~~lp 771 (1099)
|+.|+++.|-+.+... .+..+.+|+.|.|.||.+-.-|
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999999998875332 3566788999999999775433
No 99
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.3e-05 Score=84.48 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=123.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcC--CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce--eEEEEeccccccCCCCH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV--GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG--RCFVSNVRVESENGHRL 102 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~ 102 (1099)
+...|+.+.+|+++++++...|.. ......-+.|+|.+|+|||+.++.+.+++...... .+|+. +. ...+.
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~----~~~t~ 86 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CL----ELRTP 86 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-ee----eCCCH
Confidence 455677799999999999988762 12223338899999999999999999988765433 35553 32 45567
Q ss_pred HHHHHHHHHHHhccccc-ccCCChhHHHHHHhc--CCeEEEEEeCCCChh-----HHHHHhcCCCCCCCCCeEE--EEeC
Q 001326 103 VYLRERVLSEIFEENIK-IETPCLPEYIGERLR--RMKVLIVLDDVNKVG-----QLKYLAGGIDRFGPGSRII--ITTR 172 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~-~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIi--iTTR 172 (1099)
.++..+++.++...... ....+....+.+.+. ++.++||||+++... .+-.|....... .++|+ ..+-
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n 164 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSN 164 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEec
Confidence 78888888877522111 111125556666654 578999999997543 233333332222 45443 3333
Q ss_pred CcccccccC-----CCCcceEecCCCCHHHHHHHHhhhh---cCCCCCChhHHHHHHHHHHHhCCC-chHHHHH
Q 001326 173 DKWILDNFG-----VHSSNIYEVNGLEYDEARELFCNYA---FKENHCPDDLLALSKCVLKYANGN-PLALTVL 237 (1099)
Q Consensus 173 ~~~v~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 237 (1099)
+......+. .-....+..++-+.+|-.+++..++ |......++..+++..++...+|- -.|+..+
T Consensus 165 ~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 165 DDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred cHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 332222111 1111246788889999999888776 334444455556666666666653 3444443
No 100
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.10 E-value=2.9e-05 Score=95.13 Aligned_cols=173 Identities=19% Similarity=0.239 Sum_probs=99.3
Q ss_pred CCCCCccccchhhHH---HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHH
Q 001326 28 SSDFKGLVGLSSRIE---KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~---~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
|...+++||.+..+. .+...+. ......+.++|++|+||||+|+.+++.....|. .+.. ...++..
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna------~~~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA------VLAGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh------hhhhhHH
Confidence 555678999998774 4656664 334556789999999999999999998765542 1110 0111111
Q ss_pred HHHHHHHHHhcccccccCCChhHHHHHHh--cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEE--eCCcc--c
Q 001326 105 LRERVLSEIFEENIKIETPCLPEYIGERL--RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIIT--TRDKW--I 176 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiT--TR~~~--v 176 (1099)
+ ++.+. ...+.+ .+++.+||||||+.. .+.+.|.... ..|+.++|+ |.+.. +
T Consensus 93 i-r~~i~----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 L-RAEVD----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred H-HHHHH----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 1 11111 111111 246779999999754 4556666543 345555554 33321 1
Q ss_pred ccccCCCCcceEecCCCCHHHHHHHHhhhhcCC-----CCCChhHHHHHHHHHHHhCCCch
Q 001326 177 LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKE-----NHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 177 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
..... ....++++++++.++...++.+.+-.. .....--.+....|++++.|..-
T Consensus 153 ~~aL~-SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 153 NKALV-SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhHhh-ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11110 112279999999999999998765310 11111223455667788887653
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=4.6e-05 Score=81.46 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=91.3
Q ss_pred ccccchh-hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHH
Q 001326 33 GLVGLSS-RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLS 111 (1099)
Q Consensus 33 ~~vGr~~-~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 111 (1099)
.++|-.. .+..+..+... ...+.+.|+|+.|+|||+||+++++....+-..+.|+.. ... ...
T Consensus 24 f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~~-------~~~------ 87 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DKR-------AWF------ 87 (235)
T ss_pred cccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HHH-------hhh------
Confidence 3447333 33344444332 233578899999999999999999977655444556541 100 000
Q ss_pred HHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh---hHHHHHh-cCCCC-CCCC-CeEEEEeCCccc---------
Q 001326 112 EIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV---GQLKYLA-GGIDR-FGPG-SRIIITTRDKWI--------- 176 (1099)
Q Consensus 112 ~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~-~~~~~-~~~g-srIiiTTR~~~v--------- 176 (1099)
...+.+.+.. --+|++||++.. .+|+... ..+.. ...| .++|+||+....
T Consensus 88 --------------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 88 --------------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred --------------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011111111 137889999653 3343221 11111 1234 479999985421
Q ss_pred ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 177 LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 177 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
...+.. ..+++++++++++-.+++.+++..... .--++...-+++.+.|..-++.
T Consensus 153 ~SRl~~--g~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 153 ASRLDW--GQIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHhC--CceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHH
Confidence 112221 238999999999999998876643221 1122455556666666554443
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.10 E-value=2e-05 Score=90.67 Aligned_cols=174 Identities=22% Similarity=0.242 Sum_probs=98.4
Q ss_pred CCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccccc
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 97 (1099)
...+.+.|+++.++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .+. .
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~----- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-G----- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-h-----
Confidence 3446788999999999887642 1133567889999999999999999998654321 111 0
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhH-HHHHHhcCCeEEEEEeCCCChh------------H----HHHHhcCCCC
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPE-YIGERLRRMKVLIVLDDVNKVG------------Q----LKYLAGGIDR 160 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~ 160 (1099)
..+. ....+. ...... .+...-...+.+|+|||++... . +..+......
T Consensus 199 -----~~l~----~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 199 -----SELV----QKFIGE-----GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -----HHHh----Hhhccc-----hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 0111 100000 000111 1111223457899999997531 1 2223322221
Q ss_pred C--CCCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCc
Q 001326 161 F--GPGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 161 ~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 231 (1099)
. ..+.+||.||......... ..+. .++++..+.++..++|..++.+..... .++ ..+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~--~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDR--IIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCce--EEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 1 2355677777654332211 1233 799999999999999998875433222 233 34555555544
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=7e-05 Score=89.65 Aligned_cols=194 Identities=12% Similarity=0.115 Sum_probs=107.5
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC----ceeEEEEeccccccCCCCHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF----EGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~ 103 (1099)
|...+++||-+..++.|..++..+ .-...+.++|..|+||||+|+.+...+-..- ..... ...+.-
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~---------~pCg~C 81 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA---------TPCGVC 81 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC---------CCCCcc
Confidence 456688999888888899888643 2346778999999999999999987653210 00000 000111
Q ss_pred HHHHHHHHHHhccccccc--CCChhHHHHHHh--------cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEe
Q 001326 104 YLRERVLSEIFEENIKIE--TPCLPEYIGERL--------RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITT 171 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~--~~~~~~~l~~~L--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT 171 (1099)
.-.+.+...-...-.... .....+.+++.+ .++.-++|||+|+.. ...+.|...+.......++|++|
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 111111000000000000 000111222211 234558899999865 34666666655444556666665
Q ss_pred CC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 172 RD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 172 R~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
.+ ..+.... ......++++.++.++..+.+.+.+-+....- -.+....|++.++|.+--+
T Consensus 162 td~~kil~TI-lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 162 TDPQKVPVTV-LSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCchhhhHHH-HHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 44 3333221 11223799999999999999987764332211 1245667888888877543
No 104
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=7e-08 Score=110.52 Aligned_cols=97 Identities=26% Similarity=0.252 Sum_probs=43.8
Q ss_pred CceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccc-cCCCCCCCEEEccCCCC
Q 001326 689 LVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQD-ICCLSSLESLNLAENNF 767 (1099)
Q Consensus 689 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~-~~~l~sL~~L~L~~n~l 767 (1099)
|...+.++|.+..+..++.-++.|+.|+|+.|+......+..++.|++|+|+.|.+..+|.- ..++. |..|.|+||.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 33334444444444444444444444444444444444444444444555554444444432 11222 44455555544
Q ss_pred ccccccccCCCCCCEEeecC
Q 001326 768 ESLPSSISQLSCLRRLCLRN 787 (1099)
Q Consensus 768 ~~lp~~l~~l~~L~~L~L~~ 787 (1099)
+++- ++.+|.+|+.||+++
T Consensus 245 ~tL~-gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 245 TTLR-GIENLKSLYGLDLSY 263 (1096)
T ss_pred Hhhh-hHHhhhhhhccchhH
Confidence 4443 344444455555544
No 105
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.9e-05 Score=86.74 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=109.3
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC---------------------ce
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF---------------------EG 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~ 85 (1099)
.|...+++||.+..++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-... ..
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 35566889999999888988886432 245788999999999999999987542211 11
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~ 163 (1099)
.+.+.. + ...++.++. .++..... .-..+++-++|+|+++... ..+.|...+....+
T Consensus 87 v~eida----a-s~~~vddIR-~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 87 VIEIDA----A-SNTSVDDIK-VILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEEec----c-cCCCHHHHH-HHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 122210 0 122232222 12111100 0012455689999997553 46666666555456
Q ss_pred CCeEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 164 GSRIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 164 gsrIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
.+++|++|.+ ..+..... .....+++++++.++..+.+.+.+-..... --.+....|++.++|.+-.
T Consensus 146 ~v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 146 HVKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CeEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 6777766643 33333221 122379999999999999998877543321 1124456788888887753
No 106
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.03 E-value=7.2e-05 Score=90.91 Aligned_cols=207 Identities=18% Similarity=0.127 Sum_probs=110.8
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc--cC---ceeEEEEeccccccCCCCH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW--EF---EGRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f---~~~~~~~~~~~~~~~~~~~ 102 (1099)
|...+.++|.+..++++.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+..- ... -..+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~-~~~-l~~d~ 225 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD-GTT-LRWDP 225 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe-chh-ccCCH
Confidence 45667899999999988877742 33457899999999999999999886532 11 112233210 000 01111
Q ss_pred HHHHHHHH---------------HHHhcc----------c------ccccCCC--hhHHHHHHhcCCeEEEEEeCCCCh-
Q 001326 103 VYLRERVL---------------SEIFEE----------N------IKIETPC--LPEYIGERLRRMKVLIVLDDVNKV- 148 (1099)
Q Consensus 103 ~~l~~~ll---------------~~l~~~----------~------~~~~~~~--~~~~l~~~L~~kr~LlVLDdv~~~- 148 (1099)
..+...++ ...... . +.....+ .+..+.+.+.++++.++-|+.|..
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 11111111 100000 0 0011111 466677777777888876666533
Q ss_pred -hHHHHHhcCCCCCCCCCeEEE--EeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHH
Q 001326 149 -GQLKYLAGGIDRFGPGSRIII--TTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLK 225 (1099)
Q Consensus 149 -~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~ 225 (1099)
..|+.+...+....+...|+| ||++.......-......+.+.+++.+|.++++.+.+-..... --.+..+.|.+
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~ 383 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIAR 383 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Confidence 345555544443344444555 5665432211101111267899999999999998876432211 11234455566
Q ss_pred HhCCCchHHHHHhhh
Q 001326 226 YANGNPLALTVLGSF 240 (1099)
Q Consensus 226 ~~~GlPLal~~lg~~ 240 (1099)
++..-+-|+..++..
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 655445566555443
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00011 Score=86.85 Aligned_cols=183 Identities=16% Similarity=0.121 Sum_probs=107.3
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------------Cce
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---------------------FEG 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~ 85 (1099)
.|...+++||-+..++.|..++..+ .-...+.++|+.|+||||+|+.+...+-.. |..
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 3556688999999999999999643 224567899999999999999999865321 111
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 163 (1099)
...+.. . ...++..+. +++..+.- ....++.-++|+|+|+.. ...+.|...+....+
T Consensus 90 ~~eida----a-s~~~v~~iR-~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 90 LFEVDA----A-SRTKVEDTR-ELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEEcc----c-ccCCHHHHH-HHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 111110 0 112222221 12221110 011245567889999865 345566655554455
Q ss_pred CCeEEEEeCCc-ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 164 GSRIIITTRDK-WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 164 gsrIiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
.+++|++|.+. .+.... ......+++++++.++..+.+.+.+-.....- ..+....|++.++|.+--+
T Consensus 149 ~~~fIlattd~~kl~~tI-~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 149 HVKFILATTDHHKLPVTV-LSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred CeEEEEEECChHhchHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 67777666543 332221 11122689999999998877766653322211 1234567888888887543
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00012 Score=84.77 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=109.1
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--CceeEEEEeccccccCCCCHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE--FEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
.|...+.++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.+.+.+... ....-|..... ...+.-.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~----~~c~~c~ 85 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT----EPCGECE 85 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC----CCCCCCH
Confidence 3556688999998888898888633 224557899999999999999999876432 10001110000 0000000
Q ss_pred HHHHHHHHHhcc----cc-cccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEe-
Q 001326 105 LRERVLSEIFEE----NI-KIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITT- 171 (1099)
Q Consensus 105 l~~~ll~~l~~~----~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT- 171 (1099)
..+++....... +. .....+.+..+.+.+ .+++-++|+|+++.. .+++.+...+....+.+.+|++|
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 111111000000 00 000001111122222 245568899999755 35666666655545566766555
Q ss_pred CCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 172 RDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 172 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
+...+..... .....++++++++++..+.+...+-.... .--.+.+..+++.++|.+--+
T Consensus 166 ~~~kl~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 166 ELHKIPATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred ChHHhHHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 4333332221 11126899999999998888776632211 122356778899999987533
No 109
>PRK09087 hypothetical protein; Validated
Probab=98.03 E-value=9.4e-05 Score=78.23 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=79.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
.+.+.|||.+|+|||+|+++++.... ..|+.. ..+...+... +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh--------------------hh
Confidence 35689999999999999999887642 224431 0111111111 11
Q ss_pred CCeEEEEEeCCCChh-HHHHHhcCCCC-CCCCCeEEEEeCCc---------ccccccCCCCcceEecCCCCHHHHHHHHh
Q 001326 135 RMKVLIVLDDVNKVG-QLKYLAGGIDR-FGPGSRIIITTRDK---------WILDNFGVHSSNIYEVNGLEYDEARELFC 203 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~~-~~~~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 203 (1099)
+ -+|++||++... +-+.+...++. ...|..||+|++.. .+...+.. ..+++++++++++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~--gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKA--ATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhC--CceeecCCCCHHHHHHHHH
Confidence 1 278889996432 11222222211 13477899998742 22222222 2389999999999999999
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 204 NYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 204 ~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
+++-.... .--+++..-|++.+.|..-++.
T Consensus 164 ~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 164 KLFADRQL--YVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhhhhHHHHH
Confidence 88743221 1112455556666666665554
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.99 E-value=0.00016 Score=74.73 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=93.0
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------------CceeEEEEeccccccCCCC
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---------------------FEGRCFVSNVRVESENGHR 101 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 101 (1099)
.+.+.+..+ .-...+.++|+.|+||||+|+.+...+... +....++.. .. ...+
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~-~~~~ 77 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EG-QSIK 77 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---cc-CcCC
Confidence 344555322 223678899999999999999999876432 111111110 00 1111
Q ss_pred HHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCc-cccc
Q 001326 102 LVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDK-WILD 178 (1099)
Q Consensus 102 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~ 178 (1099)
...+ +++...+.. ....+.+-++|+||++... ..+.|...+....+.+.+|++|++. .+..
T Consensus 78 ~~~i-~~i~~~~~~---------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 78 VDQV-RELVEFLSR---------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHH-HHHHHHHcc---------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 1111 111111110 0012456688999997553 4566666665555667777777654 2222
Q ss_pred ccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 179 NFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 179 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
... .....+++.+++.++..+++.+. + . . .+.+..+++.++|.|..
T Consensus 142 ~i~-sr~~~~~~~~~~~~~~~~~l~~~--g--i-~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIR-SRCQVLPFPPLSEEALLQWLIRQ--G--I-S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHH-hhcEEeeCCCCCHHHHHHHHHHc--C--C-C---HHHHHHHHHHcCCCccc
Confidence 221 12238999999999999988776 1 1 1 35678899999998853
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.99 E-value=7.1e-05 Score=78.86 Aligned_cols=180 Identities=16% Similarity=0.162 Sum_probs=93.9
Q ss_pred Ccc-ccchhhH--HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc--eeEEEEeccccccCCCCHHHHH
Q 001326 32 KGL-VGLSSRI--EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE--GRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 32 ~~~-vGr~~~~--~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
+.| +|-..+. ................+.|||..|+|||.|.+++++.+..... .++|+. .....
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~ 76 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFI 76 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHH
Confidence 444 5754443 2233333332333456789999999999999999998765432 244553 22333
Q ss_pred HHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---HHHH-HhcCCCC-CCCCCeEEEEeCCcc-ccccc
Q 001326 107 ERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---QLKY-LAGGIDR-FGPGSRIIITTRDKW-ILDNF 180 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~-l~~~~~~-~~~gsrIiiTTR~~~-v~~~~ 180 (1099)
+.+...+.. .....+++.++.- =+|++|||+... .|+. +...+.. ...|-+||+|++... -....
T Consensus 77 ~~~~~~~~~--------~~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 77 REFADALRD--------GEIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHHT--------TSHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHHc--------ccchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 444443332 1234455666643 467899996542 2222 2222211 135779999996542 11111
Q ss_pred C------CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 181 G------VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 181 ~------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
. .....+++++++++++..+++.+.|-..... --++++.-+++.+.+..-.
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHH
Confidence 0 1112389999999999999999888543321 1224444555555544433
No 112
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=7.2e-05 Score=88.37 Aligned_cols=197 Identities=16% Similarity=0.067 Sum_probs=105.6
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
.|...+.++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+.+.+...- |.. . ...+--...
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~-----~~Cg~C~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G-----DCCNSCSVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C-----CCCcccHHH
Confidence 3556688999999999999988643 2346788999999999999999998763211 100 0 000000011
Q ss_pred HHHHHHHhcc----cc-cccCCChhHHHHHH-----hcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEe-CC
Q 001326 107 ERVLSEIFEE----NI-KIETPCLPEYIGER-----LRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITT-RD 173 (1099)
Q Consensus 107 ~~ll~~l~~~----~~-~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~ 173 (1099)
+++....... +. .....+..+.+.+. ..+++=++|+|+++.. .....|...+....+...+|++| ..
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 1110000000 00 00000001111111 1123335999999764 44556655444334455665555 33
Q ss_pred cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001326 174 KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTVL 237 (1099)
Q Consensus 174 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 237 (1099)
..+..... .....+++.+++.++....+...+-..... --.+.+..+++.++|.+- |+..+
T Consensus 160 ~KLl~TI~-SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 160 QKIPLTII-SRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HhhhHHHH-hhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 33322211 112279999999999998888766432211 112456678888888664 44333
No 113
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=3.7e-06 Score=87.17 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=61.0
Q ss_pred CCCCCCEEeccCCCCccc--ccccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCCCCCCCCCCCCCCCeee
Q 001326 730 TLSSLRTLTLSGCGIIEI--SQDICCLSSLESLNLAENNFESLP--SSISQLSCLRRLCLRNCNMLQSLPELPLGLRHLE 805 (1099)
Q Consensus 730 ~l~~L~~L~Ls~~~l~~l--~~~~~~l~sL~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~ 805 (1099)
-+|++..+.+..|.+.+. ......+|++..|+|+.|++.++. +.+.+++.|..|.+++++.+..+... -=+.|-
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~--err~ll 274 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG--ERRFLL 274 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC--cceEEE
Confidence 357788888888877753 334667888889999999988664 35788999999999999998887641 123344
Q ss_pred cccCcCcccCCC
Q 001326 806 ASNCKRLQSFPE 817 (1099)
Q Consensus 806 i~~c~~L~~l~~ 817 (1099)
|...++++-+..
T Consensus 275 IaRL~~v~vLNG 286 (418)
T KOG2982|consen 275 IARLTKVQVLNG 286 (418)
T ss_pred EeeccceEEecC
Confidence 445555554444
No 114
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=0.00014 Score=85.04 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=105.4
Q ss_pred ccccchhh--HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEeccccccCCCCHHHHHHH
Q 001326 33 GLVGLSSR--IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 33 ~~vGr~~~--~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
.++|-..+ ......+..........+.|+|..|+|||+|++++.+.+.... ..++|+. ...+...
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~ 185 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARK 185 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 35566544 2233333322222245688999999999999999999765432 2334543 1234444
Q ss_pred HHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---H-HHHHhcCCCC-CCCCCeEEEEeCCcc-ccccc--
Q 001326 109 VLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---Q-LKYLAGGIDR-FGPGSRIIITTRDKW-ILDNF-- 180 (1099)
Q Consensus 109 ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~-v~~~~-- 180 (1099)
+...+.... .....+++.++. .-+||+||+.... . .+.+...+.. ...|..||+|+.... .....
T Consensus 186 ~~~~l~~~~------~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 186 AVDILQKTH------KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHHHHHHhh------hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccH
Confidence 444433210 113334444443 4478889996432 2 2333332221 134557888875431 11111
Q ss_pred ----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 181 ----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 181 ----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
......++.+++++.++..+++.+++-.......--++...-|++.++|.|-.+.-+.
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 0111237889999999999999988743221112234677789999999997765544
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00016 Score=86.03 Aligned_cols=189 Identities=12% Similarity=0.094 Sum_probs=110.2
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc---------------------e
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE---------------------G 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~ 85 (1099)
.|...++++|-+..++.|...+..+ .-...+.++|+.|+||||+|+.+.+.+-.... .
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD 89 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD 89 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc
Confidence 3455678999888888888888633 22467789999999999999999986643210 0
Q ss_pred eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCC
Q 001326 86 RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGP 163 (1099)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 163 (1099)
..++.. . ...++..+. .+...+.. .-..+++-+||+|+++.. +..+.|...+....+
T Consensus 90 v~eId~----a-~~~~Id~iR-~L~~~~~~---------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 90 VVEIDG----A-SNRGIDDAK-RLKEAIGY---------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPA 148 (624)
T ss_pred eEEEec----c-cccCHHHHH-HHHHHHHh---------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCC
Confidence 111100 0 011121111 11111100 012355678999999765 445666655543334
Q ss_pred CCeEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHHhhh
Q 001326 164 GSRIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP-LALTVLGSF 240 (1099)
Q Consensus 164 gsrIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~lg~~ 240 (1099)
...+|++|.+ ..+..... .....++++.++.++..+.+...+...... --.+.+..|++.++|.+ .|+..+...
T Consensus 149 ~~ifILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CEEEEEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5566665554 33332221 112278999999999999888766433221 12245677888899865 566666543
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.00028 Score=78.50 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcC--CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce--eE
Q 001326 12 IRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCV--GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG--RC 87 (1099)
Q Consensus 12 i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~ 87 (1099)
-+|+-....+.+..+. .+..++||+.++..+.+++.. +.+..+-+-|.|-+|.|||.+...++.+....... ++
T Consensus 132 ~ke~~~~~~~~l~~t~--~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v 209 (529)
T KOG2227|consen 132 AKEISEQRSESLLNTA--PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTV 209 (529)
T ss_pred cHHHHHHHHHHHHhcC--CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeE
Confidence 3455555555554443 356799999999999999863 45667889999999999999999999976554433 35
Q ss_pred EEEeccccccCCCCHHHHHHHHHHHHhcccccccCC-ChhHHHHHHhcCC--eEEEEEeCCCChhHH--HHHhc--CCCC
Q 001326 88 FVSNVRVESENGHRLVYLRERVLSEIFEENIKIETP-CLPEYIGERLRRM--KVLIVLDDVNKVGQL--KYLAG--GIDR 160 (1099)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-~~~~~l~~~L~~k--r~LlVLDdv~~~~~~--~~l~~--~~~~ 160 (1099)
++... .-.....+...+...+.......... +....+.+..++. .+|+|+|.+|....- ..+.. .+++
T Consensus 210 ~inc~-----sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~ 284 (529)
T KOG2227|consen 210 YINCT-----SLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK 284 (529)
T ss_pred EEeec-----cccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc
Confidence 55311 22445577777777774433322221 2455555555544 599999999765421 11111 2233
Q ss_pred CCCCCeEEEEeCCc---------ccccc-cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCC---ChhHHHHHHHHHHHh
Q 001326 161 FGPGSRIIITTRDK---------WILDN-FGVHSSNIYEVNGLEYDEARELFCNYAFKENHC---PDDLLALSKCVLKYA 227 (1099)
Q Consensus 161 ~~~gsrIiiTTR~~---------~v~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~ 227 (1099)
-+++|+|+.---. .-+.. .+. .+..+..++-+.++..+++..+.-..... +...+-.|++++.-.
T Consensus 285 -lp~sr~iLiGiANslDlTdR~LprL~~~~~~-~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 285 -LPNSRIILIGIANSLDLTDRFLPRLNLDLTI-KPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred -CCcceeeeeeehhhhhHHHHHhhhhhhccCC-CCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 3666666432211 11111 112 12378889999999999999887432221 123333444444444
Q ss_pred CCCchHHHHHh
Q 001326 228 NGNPLALTVLG 238 (1099)
Q Consensus 228 ~GlPLal~~lg 238 (1099)
|-+--|+-+.-
T Consensus 363 GDlRkaLdv~R 373 (529)
T KOG2227|consen 363 GDLRKALDVCR 373 (529)
T ss_pred hhHHHHHHHHH
Confidence 44444544443
No 117
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=4.5e-06 Score=86.51 Aligned_cols=180 Identities=21% Similarity=0.168 Sum_probs=111.3
Q ss_pred cCCCCCCEEEccCCCCcc---cCcccccCCCCcEEEccCCCCCCcccccccCCCCCceeecCCCCCc--cCCccccCCCC
Q 001326 637 EKMEPLEKLALDRSGIKE---LPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAIL--QLPSSIADLNK 711 (1099)
Q Consensus 637 ~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~~~~l~~ 711 (1099)
...+.++.|+|.+|.++. +...+.++|.|++|+|+.|+....+-..-..+.+|+.|-+.++.+. ...+.+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 345667777777777763 3344567788888888877755433221135567777777777654 45566677788
Q ss_pred CcEEEccCCCCCCCCC----CC-CCCCCCEEeccCCCCcc---cccccCCCCCCCEEEccCCCCcccc--ccccCCCCCC
Q 001326 712 LRELCLSGCRGFALPP----LS-TLSSLRTLTLSGCGIIE---ISQDICCLSSLESLNLAENNFESLP--SSISQLSCLR 781 (1099)
Q Consensus 712 L~~L~L~~~~~~~l~~----l~-~l~~L~~L~Ls~~~l~~---l~~~~~~l~sL~~L~L~~n~l~~lp--~~l~~l~~L~ 781 (1099)
++.|.++.|....+.- .. .-+.+++|+.-+|.... +-.--..+|++..+-+..|.+.+.. .+...+|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 8888887774221110 11 12345555555554331 1111234688888888888887554 3456678888
Q ss_pred EEeecCCCCCCCCC-----CCCCCCCeeecccCcCcccCCC
Q 001326 782 RLCLRNCNMLQSLP-----ELPLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 782 ~L~L~~c~~l~~lp-----~l~~sL~~L~i~~c~~L~~l~~ 817 (1099)
.|+|+.+ ++.++. .-+++|..|.+.+.|-...+..
T Consensus 228 ~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 228 CLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 8888774 444443 2457888888888887766654
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00028 Score=81.23 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=105.2
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--------CceeEEEEeccccccCC
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE--------FEGRCFVSNVRVESENG 99 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~~ 99 (1099)
|...+.++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+++.+.+... |...++-.+ .. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~-~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AA-SN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cc-cC
Confidence 455678999999999999998643 234678899999999999999998876431 222222110 00 11
Q ss_pred CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEe-CCccc
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITT-RDKWI 176 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTT-R~~~v 176 (1099)
.++..+. ++..++... ...+++-++|+|+++... .++.+...+....+...+|++| +...+
T Consensus 88 ~~~~~i~-~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDDIR-NLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHHHH-HHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 1222221 222211100 012345579999997543 3555544433323445566555 33333
Q ss_pred ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 177 LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 177 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
..... .....++.+++++++....+...+-..... --.+.+..+++.++|.+-
T Consensus 152 ~~~l~-sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 152 IPTIL-SRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred CHHHH-hcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 32221 112278999999999999888877543321 112566677888888665
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00033 Score=84.37 Aligned_cols=198 Identities=12% Similarity=0.075 Sum_probs=105.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--CceeEEEEeccccccCCCCHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE--FEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
.|...+.+||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+.+.+-.. .+...|...+.+ ..+.-.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~ 85 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECE 85 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCH
Confidence 3556688999999999999988633 234567899999999999999999876432 110111110000 000001
Q ss_pred HHHHHHHHHhcc----cc-cccCCChhHHHHHHh-----cCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEe-
Q 001326 105 LRERVLSEIFEE----NI-KIETPCLPEYIGERL-----RRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITT- 171 (1099)
Q Consensus 105 l~~~ll~~l~~~----~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTT- 171 (1099)
..+.+...-... +. .....+.+..+.+.+ .+.+-++|+|+++... ..+.|...+....+.+.+|++|
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 111110000000 00 000001111111222 2344578999997653 4566665555434455655555
Q ss_pred CCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 172 RDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 172 R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
+...+.... ......+++.+++.++....+.+.+-.... .--.+.+..+++.++|..-
T Consensus 166 ~~~kLl~TI-~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 166 ELHKIPATI-ASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred ChhhhhHHH-HhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 433333322 112237999999999988888766532221 1122456778889998664
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00012 Score=87.14 Aligned_cols=180 Identities=16% Similarity=0.111 Sum_probs=105.8
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc---------------------ee
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE---------------------GR 86 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~ 86 (1099)
|...+++||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+...+..... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 4566789999999999999886332 2456679999999999999999886633210 01
Q ss_pred EEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCC
Q 001326 87 CFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPG 164 (1099)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 164 (1099)
+++. .. ...++..+ ++++..... .-..+++-++|+|+++... ..+.|...+......
T Consensus 91 ~ei~----~~-~~~~vd~i-r~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD----AA-SNTQVDAM-RELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee----cc-ccCCHHHH-HHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1110 00 01111111 112111100 0113566789999998664 355565555444455
Q ss_pred CeEEEEeCCc-ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 165 SRIIITTRDK-WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 165 srIiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
+.+|++|.+. .+.... ......++++.++.++..+.+.+.+-..... ...+....|++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI-~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTV-LSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6666655443 333221 1112378999999999998887765332211 122445678888999775
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00042 Score=82.85 Aligned_cols=191 Identities=19% Similarity=0.153 Sum_probs=107.9
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce---eEEEE-------------
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG---RCFVS------------- 90 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~------------- 90 (1099)
.|...+++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+...+...... -|=.+
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 3556688999999999999998643 234567899999999999999999865432100 00000
Q ss_pred -eccccc-cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCe
Q 001326 91 -NVRVES-ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSR 166 (1099)
Q Consensus 91 -~~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr 166 (1099)
++.+.. ....++..+ +++...+. ..-..+++-++|+|+++.. ...+.|+..+....+...
T Consensus 87 ~dvieidaas~~gvd~i-Rel~~~~~---------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 87 IDVVELDAASHGGVDDT-RELRDRAF---------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred ceEEEeccccccCHHHH-HHHHHHHH---------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 000000 001112111 11111100 0001245558899999754 456666666555455666
Q ss_pred EEEEeC-CcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001326 167 IIITTR-DKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTVL 237 (1099)
Q Consensus 167 IiiTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 237 (1099)
+|++|. ...+..... .....|++..++.++..+.+.+.+-.....- -.+....|++.++|.+- |+..+
T Consensus 151 fIL~tte~~kll~TI~-SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 151 FIFATTEPEKVLPTIR-SRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred EEEEeCChHhhHHHHH-HhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 665554 333332221 1123799999999999988877664332211 12455668888898774 44443
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.89 E-value=8e-05 Score=93.11 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 11 PIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 11 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+++...+..++.. +..-+.++||+.+++++.+.|... ...-+.++|.+|+|||++|+.+++++..
T Consensus 164 ~l~~~~~~l~~~~r---~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 164 ALEKYTVDLTEKAK---NGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred HHHHHhhhHHHHHh---cCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555555554443 233467999999999999988643 2334569999999999999999998743
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=0.00012 Score=85.68 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=90.4
Q ss_pred CCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-----ceeEEEEec
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-----EGRCFVSNV 92 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~ 92 (1099)
...+.+.|.+..++++.+.+.. +-...+-|.++|++|.|||++|+++++.+...+ ....|+ ++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-NI 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-ec
Confidence 3446788999999998887641 112356688999999999999999999875542 123343 22
Q ss_pred cccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH-hcCCeEEEEEeCCCChh---------H-----HHHHhcC
Q 001326 93 RVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER-LRRMKVLIVLDDVNKVG---------Q-----LKYLAGG 157 (1099)
Q Consensus 93 ~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~l~~~ 157 (1099)
.... -......-..+.++.+ .+..++. -.+++++|+||+++..- + +..+...
T Consensus 258 ~~~e-Ll~kyvGete~~ir~i------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGPE-LLNKYVGETERQIRLI------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cchh-hcccccchHHHHHHHH------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 1100 0000000000001111 1111111 13578999999996431 1 2233333
Q ss_pred CCCCC--CCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 158 IDRFG--PGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 158 ~~~~~--~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
++... .+..||.||-........ ..+. .++++..+.++..++|..+.
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~--~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDV--KIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccce--EEEeCCCCHHHHHHHHHHHh
Confidence 33221 344555566544332211 2344 68999999999999998886
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.89 E-value=0.0001 Score=83.20 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ .++. . + . .....+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~-~-~~~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---S-D-CRIDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---C-c-ccHHHHHH
Confidence 556688999999999999998642 2356777899999999999999998764322 2221 1 1 1 11222222
Q ss_pred HHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh---hHHHHHhcCCCCCCCCCeEEEEeCCcccccccCCCC
Q 001326 108 RVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV---GQLKYLAGGIDRFGPGSRIIITTRDKWILDNFGVHS 184 (1099)
Q Consensus 108 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~ 184 (1099)
.+ .+..... ...+.+-+||+||++.. +..+.+.........+.++|+||.........-...
T Consensus 87 ~l-~~~~~~~--------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RL-TRFASTV--------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HH-HHHHHhh--------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 11 1111100 01133457889999755 222333322333356778898886543211100011
Q ss_pred cceEecCCCCHHHHHHHHhh
Q 001326 185 SNIYEVNGLEYDEARELFCN 204 (1099)
Q Consensus 185 ~~~~~l~~L~~~ea~~Lf~~ 204 (1099)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 12677778888887776654
No 125
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.87 E-value=1.4e-06 Score=94.68 Aligned_cols=251 Identities=21% Similarity=0.269 Sum_probs=119.6
Q ss_pred CCCcEEEeCCcccccccc--cccccCccccEEeccCCCCCCcc--chhhcCCCCCCEEEccCC-CCcc--cCcccccCCC
Q 001326 592 PNLKILNLGFCKRLKRVS--TGICKLKYLRCLYLLDCSDLESF--PEILEKMEPLEKLALDRS-GIKE--LPSSIENLEG 664 (1099)
Q Consensus 592 ~~L~~L~L~~~~~~~~l~--~~l~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~L~~~-~l~~--lp~~l~~l~~ 664 (1099)
..|+.|.+++|...+.-+ .....++++++|.+.+|..++.. -..-..+++|++|++..| .++. +-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457888888887655432 23456788888888888755432 122345667777777663 3332 1112245666
Q ss_pred CcEEEccCCCCCCcccccccCCCCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCC----CCCCCCCCEEecc
Q 001326 665 LKELQLMCCSKLGSLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPP----LSTLSSLRTLTLS 740 (1099)
Q Consensus 665 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~----l~~l~~L~~L~Ls 740 (1099)
|++|+++.|+....- .+.....++.+|+.+.+.||....+.. -....-+.++++.
T Consensus 218 L~~lNlSwc~qi~~~---------------------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGN---------------------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred HHHhhhccCchhhcC---------------------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchh
Confidence 777777766643320 111122233334444444443222211 1222333444444
Q ss_pred CCCCcc---cccccCCCCCCCEEEccCCCC-c--cccccccCCCCCCEEeecCCCCCCCCC-----CCCCCCCeeecccC
Q 001326 741 GCGIIE---ISQDICCLSSLESLNLAENNF-E--SLPSSISQLSCLRRLCLRNCNMLQSLP-----ELPLGLRHLEASNC 809 (1099)
Q Consensus 741 ~~~l~~---l~~~~~~l~sL~~L~L~~n~l-~--~lp~~l~~l~~L~~L~L~~c~~l~~lp-----~l~~sL~~L~i~~c 809 (1099)
.|.... +-..-.++..|+.|+.+++.. + .+-.-..+.++|+.|.++.|+.+...- -..+.|+.|++.+|
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 443221 111123344455555554422 1 111122334555555555555433221 12234444554444
Q ss_pred cCc-----ccCCCCchhhHHhhHhHHhhhhcc-----cCCCcccCCCceEEEcCCCCcchhHHH
Q 001326 810 KRL-----QSFPESPSCIEELHASLVEKLSDQ-----AHGSVSLTAPGMLKFDNCLKLNERSVW 863 (1099)
Q Consensus 810 ~~L-----~~l~~~~~~L~~L~~~~~~~L~~~-----~~~~~~~~~l~~l~i~nC~~L~~~~~~ 863 (1099)
... ..+...-+.++.|.++.|+..++. ..+.++...+..+.++|||.+++....
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 322 122222234555555555555544 333456666777888888888765544
No 126
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.86 E-value=0.00019 Score=82.15 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=100.1
Q ss_pred CCCCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
|.....++.|.+..++++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~----- 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV----- 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-----
Confidence 334446799999999988887641 1123577889999999999999999997654431 111
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGI 158 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~ 158 (1099)
. ..+..... +. ... ..+.+.......+.+|+||+++... .+..+....
T Consensus 212 ~------s~l~~k~~----ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l 276 (398)
T PTZ00454 212 G------SEFVQKYL----GE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM 276 (398)
T ss_pred h------HHHHHHhc----ch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh
Confidence 0 01111100 00 000 1222223334578999999986320 122233222
Q ss_pred CCC--CCCCeEEEEeCCcccccc-----cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCC
Q 001326 159 DRF--GPGSRIIITTRDKWILDN-----FGVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGN 230 (1099)
Q Consensus 159 ~~~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 230 (1099)
... ..+..||+||........ -..+. .++++..+.++..++|..+..+..... -++ .++++.+.|.
T Consensus 277 d~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~--~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 277 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDR--KIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKI 350 (398)
T ss_pred hccCCCCCEEEEEecCCchhCCHHHcCCCcccE--EEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCC
Confidence 211 235678888875543321 12344 789999999999999987764322211 123 3455556665
Q ss_pred ch
Q 001326 231 PL 232 (1099)
Q Consensus 231 PL 232 (1099)
--
T Consensus 351 sg 352 (398)
T PTZ00454 351 SA 352 (398)
T ss_pred CH
Confidence 43
No 127
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.86 E-value=2.3e-05 Score=86.82 Aligned_cols=92 Identities=18% Similarity=0.135 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCC-------hhH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPC-------LPE 127 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-------~~~ 127 (1099)
+..+|+|++|+||||||+++|+.+.. +|+..+|+..+.+. ...+..+++++...+........... ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999997654 69999999876542 23677888888754333222111100 111
Q ss_pred HHHH-HhcCCeEEEEEeCCCChhH
Q 001326 128 YIGE-RLRRMKVLIVLDDVNKVGQ 150 (1099)
Q Consensus 128 ~l~~-~L~~kr~LlVLDdv~~~~~ 150 (1099)
.-+. +-.+++++|++|++.....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHHH
Confidence 1111 1357999999999965543
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.85 E-value=0.00016 Score=78.89 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=80.6
Q ss_pred ccccchhhHHHHHHhhc-------------CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEecccccc
Q 001326 33 GLVGLSSRIEKLISLLC-------------VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESE 97 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~ 97 (1099)
.++|.+...+++.+... ...+....+.++|++|+||||+|+.+++.+...- ....++. + .
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~---~- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-V---E- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-e---c-
Confidence 47888777666654422 0123456678999999999999999998653211 1111221 1 0
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCCh----------hHHHHHhcCCCCCCCCCe
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKV----------GQLKYLAGGIDRFGPGSR 166 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gsr 166 (1099)
. .. +....... ... ....+.+. . .-+|++|+++.. +.++.+............
T Consensus 82 -~---~~----l~~~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 82 -R---AD----LVGEYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred -H---HH----hhhhhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 0 01 11111100 000 12222221 1 248899999752 345556555443333334
Q ss_pred EEEEeCCccc----------ccccCCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 167 IIITTRDKWI----------LDNFGVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 167 IiiTTR~~~v----------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
+|+++..... ...+ .. .++++.++.+|-.+++.+.+-.
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf--~~--~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRF--PI--SIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhcc--ce--EEEECCCCHHHHHHHHHHHHHH
Confidence 5555543322 1111 22 6899999999999999877643
No 129
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.85 E-value=5e-05 Score=87.47 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=92.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
|.....++.|.+..++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .+..
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~---- 250 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG---- 250 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec----
Confidence 334456789999999999887742 1123456789999999999999999998765542 1110
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGI 158 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~ 158 (1099)
+ . +..... .. ... ....+.....+.+.+|+||+++... .+..+...+
T Consensus 251 s----e---L~~k~~----Ge-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L 314 (438)
T PTZ00361 251 S----E---LIQKYL----GD-----GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL 314 (438)
T ss_pred c----h---hhhhhc----ch-----HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH
Confidence 0 0 000000 00 000 1122222223567888999875321 112222222
Q ss_pred CCC--CCCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 159 DRF--GPGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 159 ~~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
..+ ..+.+||+||.....+... ..+. .++++..+.++..++|..++.+
T Consensus 315 dg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~--~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 315 DGFDSRGDVKVIMATNRIESLDPALIRPGRIDR--KIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hhhcccCCeEEEEecCChHHhhHHhccCCeeEE--EEEeCCCCHHHHHHHHHHHHhc
Confidence 211 2356788888755433321 1233 7899999999999999988754
No 130
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.85 E-value=0.00048 Score=71.88 Aligned_cols=258 Identities=16% Similarity=0.189 Sum_probs=145.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcC---CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCV---GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.|..-.+|||.++-.++|.=.+.. .....-.|.++|++|.||||||.-+++++...+.... ...-+...++
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----Gp~leK~gDl- 94 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----GPALEKPGDL- 94 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----cccccChhhH-
Confidence 366678999999888887766652 2234567889999999999999999998765433110 0000011111
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-HHHHHh-cCCCC--------CCCCCe-------
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-QLKYLA-GGIDR--------FGPGSR------- 166 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-~~~~l~-~~~~~--------~~~gsr------- 166 (1099)
...+ ..|+..- ++.+|.+.... ..++++ +.... .++++|
T Consensus 95 ----------------------aaiL-t~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 95 ----------------------AAIL-TNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----------------------HHHH-hcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1111 1122233 34467775432 122211 11111 134444
Q ss_pred ----EEEEeCCccccc----ccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 167 ----IIITTRDKWILD----NFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 167 ----IiiTTR~~~v~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
|=-|||.-.+-. .+|+ +.+++.-+.+|-.++..+.|..-+. +--.+-+.+|+++.+|-|-...-+-
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi----~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGI----IQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred CeeEeeeccccccccchhHHhcCC----eeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHH
Confidence 336888765433 3444 6789999999999999888843221 2223568889999999996554444
Q ss_pred hhcCCCCHHHHHHHHHHHhcCC------CchhHHHHhhcccCCChhhhhHHhhhccccccch--HhHHHHHhcCCCc-hh
Q 001326 239 SFFHQKSKPDWEKALEKINRIS------DPDIYDVLKISYNDLRPEEKSIFLDIACFVVGEE--KDFVTSILEDPNI-AH 309 (1099)
Q Consensus 239 ~~L~~~~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~l~~~~~-~~ 309 (1099)
+..++ ........ .+.....|.+--.+|+...++.+..+.-.+.|.+ .+.+...+...-. .+
T Consensus 225 rRVRD---------fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiE 295 (332)
T COG2255 225 RRVRD---------FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIE 295 (332)
T ss_pred HHHHH---------HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHH
Confidence 43322 01111100 1123445555566777777777777666665443 3444444332211 11
Q ss_pred h-hHHHHhhccceEEecCCeE
Q 001326 310 Y-GLSVLIERSLVTISKFNKI 329 (1099)
Q Consensus 310 ~-~l~~L~~~sLi~~~~~~~~ 329 (1099)
. .=--|+..++++....|++
T Consensus 296 dv~EPyLiq~gfi~RTpRGR~ 316 (332)
T COG2255 296 DVIEPYLIQQGFIQRTPRGRI 316 (332)
T ss_pred HHHhHHHHHhchhhhCCCcce
Confidence 1 1234788888888766654
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.84 E-value=0.00066 Score=70.59 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCCCCccccchhhHHHHHHhhc--CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 28 SSDFKGLVGLSSRIEKLISLLC--VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+...+.++|.|...+.|.+-.. .......-|.+||..|.|||++++++.++...+-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 3445789999999988776543 1223455667899999999999999999876653
No 132
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00045 Score=85.88 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=105.6
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc--e-------------------
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE--G------------------- 85 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~------------------- 85 (1099)
.|...+++||.+..++.|...+..+. -.+.+.++|..|+||||+|+.+.+.+..... .
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 34556789999999999999986432 2456789999999999999999987642110 0
Q ss_pred --eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCC
Q 001326 86 --RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRF 161 (1099)
Q Consensus 86 --~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~ 161 (1099)
.+++. .. ...++.++.+ +...+ ......+++-++|||+++.. ...+.|+..+...
T Consensus 89 ~dv~eid----aa-s~~~Vd~iR~-l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 89 LDVTEID----AA-SHGGVDDARE-LRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred CcEEEec----cc-ccCCHHHHHH-HHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 00110 00 0111222111 11110 00112345557889999855 3455566555544
Q ss_pred CCCCeEEEEeC-CcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 162 GPGSRIIITTR-DKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 162 ~~gsrIiiTTR-~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
...+.+|++|. ...+..... .....|++..++.++..+++.+.+-..... ...+....|++.++|.+.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 55666665554 333433221 112379999999999988887765322211 122445678888888774
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00034 Score=82.28 Aligned_cols=183 Identities=14% Similarity=0.085 Sum_probs=108.6
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-C-------------------ceeE
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE-F-------------------EGRC 87 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-------------------~~~~ 87 (1099)
|...+++||-+...+.|...+..+ .-.++..++|..|+||||+|+.+.+.+-.. . ...+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 456688999998889999988643 234566899999999999999998865321 0 0011
Q ss_pred EEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCC
Q 001326 88 FVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGS 165 (1099)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 165 (1099)
+..+ .+ ...++..+...+ ..... ....+++-++|+|+++.. +..+.|+..+....+.+
T Consensus 89 ~eld---aa-s~~gId~IReli-e~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 89 IEMD---AA-SNRGIDDIRELI-EQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred EEec---cc-cccCHHHHHHHH-HHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 1100 00 111222222211 11000 001145668899999755 34556665555445667
Q ss_pred eEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 166 RIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 166 rIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
++|++|.+.. +..... .....+++.+++.++..+.+.+.+-.....- -.+.+..|++.++|.+--+
T Consensus 149 ~FIL~ttd~~kL~~tI~-SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 149 KFILATTDPLKLPATIL-SRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDT 215 (535)
T ss_pred EEEEEECChhhCchHHH-hhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 7777776542 222111 1223799999999999998877664332211 1355677889999988543
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.81 E-value=0.00032 Score=88.42 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 11 PIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 11 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+++...+..++.. +..-+.+|||+.++.++.+.|... ...-+.++|.+|+||||+|+.+++++..
T Consensus 169 ~l~~~~~~L~~~~r---~~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 169 ALDQYTTDLTAQAR---EGKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred hHHHHhhhHHHHhc---CCCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 45555555444432 334468999999999999988643 2334559999999999999999998754
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00021 Score=86.76 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=109.5
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
.|...+++||-+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+.......-+ ...+.....
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~---------~~c~~c~~c 80 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG---------RPCGTCEMC 80 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---------CCCccCHHH
Confidence 34556789999999999988886432 34567799999999999999999876422100000 001111111
Q ss_pred HHHHHHHhcc----cc-cccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 107 ERVLSEIFEE----NI-KIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 107 ~~ll~~l~~~----~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
+.+....... +. .....+....+.+.+ .+++-++|+|+++.. +..+.|...+....+...+|++|.+.
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1111100000 00 000000111111211 245668999999755 44666665554444566666666433
Q ss_pred -ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 175 -WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 175 -~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
.+..... .....++++.++.++....+.+.+...... .-.+.+..+++.++|.+..+.
T Consensus 161 ~kll~tI~-SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 161 HKVPATIL-SRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred hhhhHHHH-hccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3332211 112278999999999998888776543221 112556788999999886543
No 136
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00051 Score=83.03 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=107.5
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc---cCCCCHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES---ENGHRLV 103 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~---~~~~~~~ 103 (1099)
.|...+.+||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. +..+. ....++.
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvi 90 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDII 90 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEE
Confidence 3556678999999999999998643 23566789999999999999999886532110000000 00000 0000000
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHH-----hcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEE-EeCCcc
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGER-----LRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIII-TTRDKW 175 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIii-TTR~~~ 175 (1099)
. .........+..+.+.+. ..+++-++|+|+++.. ..+..|...+....+...+|+ ||+...
T Consensus 91 e----------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 91 E----------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred E----------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 0 000000000011112121 1255668899999755 456666665554444555554 444444
Q ss_pred cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001326 176 ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTVL 237 (1099)
Q Consensus 176 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 237 (1099)
+.... ......+++.+++.++..+.+...+-..... ...+.+..+++.++|.+- |+..+
T Consensus 161 Ll~TI-~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 161 IPLTI-LSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhHHH-HhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 43322 1112379999999999998887765332211 112456678889988764 44433
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00071 Score=79.24 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=106.3
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC---c-eeE----------------
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF---E-GRC---------------- 87 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---~-~~~---------------- 87 (1099)
|...++++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+.+...- + ..|
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 4566889999999999999986432 246677999999999999999998663320 0 000
Q ss_pred EEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCC
Q 001326 88 FVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGS 165 (1099)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs 165 (1099)
|+. +.. . ...++..+. ++...+. .....+++-++|+|+++.. +..+.|...+....+..
T Consensus 92 ~~~-i~g-~-~~~gid~ir-~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 VLE-IDG-A-SHRGIEDIR-QINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eEE-eec-c-ccCCHHHHH-HHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 000 000 0 011111111 1111000 0011245667899999755 34555555554434566
Q ss_pred eEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHH
Q 001326 166 RIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTV 236 (1099)
Q Consensus 166 rIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 236 (1099)
.+|++|.. ..+..... .....++++++++++..+.+...+-+.... --.+.+..++++++|.+- |+..
T Consensus 153 ~~Il~t~~~~kl~~tI~-sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 153 KFFLATTEIHKIPGTIL-SRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred eEEEEeCChHhcchHHH-HhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 67666633 33332221 112279999999999998887765332211 123456778899998764 4333
No 138
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00029 Score=84.63 Aligned_cols=195 Identities=15% Similarity=0.141 Sum_probs=109.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc----eeEEEEeccccccCCCCH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE----GRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~~~~~~~~ 102 (1099)
.|...+++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.+..... ...+-. .+.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~---------cg~ 88 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL---------CGV 88 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc---------Ccc
Confidence 35566889999999999999986432 3456779999999999999999987643321 000000 000
Q ss_pred HHHHHHHHHHHhcccccc--cCCChhHHHH---HHh-----cCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEE
Q 001326 103 VYLRERVLSEIFEENIKI--ETPCLPEYIG---ERL-----RRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIIT 170 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~--~~~~~~~~l~---~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiT 170 (1099)
-.-.+.+.......-... ......+.++ +.+ .+++=++|+|+++... ..+.|...+....+.+.+|++
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 000011110000000000 0000111111 111 2344578999997654 456666555544566777655
Q ss_pred e-CCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 171 T-RDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 171 T-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
| ....+..... .....++++.++.++....+.+.+-+.... .-.+....|++.++|.+.-+
T Consensus 169 tte~~kll~tI~-SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 169 TTEIRKVPVTVL-SRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDG 230 (598)
T ss_pred eCChhhhhHHHH-hheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 5 4333332221 122379999999999999998876433221 12255677889999988644
No 139
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.77 E-value=4.3e-05 Score=81.54 Aligned_cols=92 Identities=20% Similarity=0.118 Sum_probs=60.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCC------C-hh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETP------C-LP 126 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~------~-~~ 126 (1099)
-..++|.|++|+|||||++++++.+.. +|+..+|+..+.+ ...++..+++.+...+.......... . ..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e---r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE---RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC---CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 357789999999999999999997644 6888889876543 23577888888743332222111110 0 11
Q ss_pred HHHHH-HhcCCeEEEEEeCCCChh
Q 001326 127 EYIGE-RLRRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 127 ~~l~~-~L~~kr~LlVLDdv~~~~ 149 (1099)
..... +-.++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 12222 234899999999996543
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.75 E-value=0.00049 Score=75.67 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=81.7
Q ss_pred ccccchhhHHHHHHhhc---C-------C--CC-CEEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEecccccc
Q 001326 33 GLVGLSSRIEKLISLLC---V-------G--FP-DFRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESE 97 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~---~-------~--~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~ 97 (1099)
.++|.+...+++.++.. . + .. ...-+.++|.+|+||||+|+.++..+.... ....|+.. +
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v----~- 97 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV----T- 97 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe----c-
Confidence 46888877777665432 0 1 11 123577999999999999999888654321 11123321 1
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-----------hHHHHHhcCCCCCCCCCe
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-----------GQLKYLAGGIDRFGPGSR 166 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsr 166 (1099)
. ..+...+..... ......+.+. ..-+|+||+++.. +.++.|.........+.+
T Consensus 98 ----~----~~l~~~~~g~~~----~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 98 ----R----DDLVGQYIGHTA----PKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred ----H----HHHhHhhcccch----HHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 0 112222211110 0012222222 2358889999632 223445444443344556
Q ss_pred EEEEeCCcccccccC--------CCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 167 IIITTRDKWILDNFG--------VHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 167 IiiTTR~~~v~~~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
||+++.....-..+. ... .+++++++.+|-.+++...+-
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~--~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAH--HVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCc--EEEeCCcCHHHHHHHHHHHHH
Confidence 666664332111110 122 799999999999999887763
No 141
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.00063 Score=79.58 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=97.1
Q ss_pred cccchhhHH--HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-c-eeEEEEeccccccCCCCHHHHHHHH
Q 001326 34 LVGLSSRIE--KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-E-GRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 34 ~vGr~~~~~--~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
++|-..... ...++.. .......+.|||.+|+|||+||+++++.+..+. . .+.|+. ...+...+
T Consensus 108 v~g~~n~~a~~~~~~~~~-~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~ 175 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAK-NPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDL 175 (440)
T ss_pred ccCCchHHHHHHHHHHHh-CcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHH
Confidence 447554432 2333332 222244588999999999999999999876554 2 234543 12233344
Q ss_pred HHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh---hHH-HHHhcCCCC-CCCCCeEEEEeC-Cccccccc---
Q 001326 110 LSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV---GQL-KYLAGGIDR-FGPGSRIIITTR-DKWILDNF--- 180 (1099)
Q Consensus 110 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR-~~~v~~~~--- 180 (1099)
...+... ....+.+.++.+.-+|++||++.. ... +.+...+.. ...|..||+||. +..-...+
T Consensus 176 ~~~~~~~--------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 176 VDSMKEG--------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred HHHHhcc--------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 3333211 123344444444558999999743 111 222222111 123557888885 33211111
Q ss_pred ---CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 181 ---GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 181 ---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
......++++++.+.+.-.+++.+.+-..... --.++..-|++.+.|.--.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHH
Confidence 01112278999999999999998887432221 11345666777777654433
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.75 E-value=0.00064 Score=79.33 Aligned_cols=176 Identities=18% Similarity=0.167 Sum_probs=96.4
Q ss_pred cccchhhHH--HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc--eeEEEEeccccccCCCCHHHHHHHH
Q 001326 34 LVGLSSRIE--KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE--GRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 34 ~vGr~~~~~--~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
++|.+.... .+.++..........+.|+|..|+|||+||+++++.+..+.. .++|+. ...+..++
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~ 181 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDF 181 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHH
Confidence 567665532 233333222222456889999999999999999998765532 234442 11223334
Q ss_pred HHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh---HH-HHHhcCCCC-CCCCCeEEEEeCCc-cc-------
Q 001326 110 LSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG---QL-KYLAGGIDR-FGPGSRIIITTRDK-WI------- 176 (1099)
Q Consensus 110 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIiiTTR~~-~v------- 176 (1099)
...+... ....+.+.+++ .-+|||||++... .+ +.+...+.. ...|..||+|+... ..
T Consensus 182 ~~~~~~~--------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~ 252 (405)
T TIGR00362 182 VNALRNN--------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEER 252 (405)
T ss_pred HHHHHcC--------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhh
Confidence 4333221 12334444443 2378899997432 11 223222211 12455688877642 11
Q ss_pred -ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 177 -LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 177 -~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
...+ ....++++++.+.++-.+++.+.+-..... --++...-|++.+.|..-.
T Consensus 253 l~SRl--~~g~~v~i~~pd~~~r~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 253 LRSRF--EWGLVVDIEPPDLETRLAILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred hhhhc--cCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHH
Confidence 1111 112268999999999999998887543221 1235556667777776554
No 143
>PRK06620 hypothetical protein; Validated
Probab=97.75 E-value=0.00031 Score=73.60 Aligned_cols=134 Identities=15% Similarity=0.030 Sum_probs=73.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRR 135 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 135 (1099)
+.+.|||++|+|||+||+++++.... .++.. .... . +..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~~~~-----~-----------------------~~~~- 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------IFFN-----E-----------------------EILE- 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------hhhc-----h-----------------------hHHh-
Confidence 56889999999999999998775421 22210 0000 0 0011
Q ss_pred CeEEEEEeCCCChhHHHHHhcCCCC-CCCCCeEEEEeCCcccc---ccc--CCCCcceEecCCCCHHHHHHHHhhhhcCC
Q 001326 136 MKVLIVLDDVNKVGQLKYLAGGIDR-FGPGSRIIITTRDKWIL---DNF--GVHSSNIYEVNGLEYDEARELFCNYAFKE 209 (1099)
Q Consensus 136 kr~LlVLDdv~~~~~~~~l~~~~~~-~~~gsrIiiTTR~~~v~---~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 209 (1099)
..-++++||++...+ ..+...++. ...|..||+|++..... ... ......+++++++++++..+++.+.+-..
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 224678899985533 122211111 13567899999854321 100 01112279999999999888887776422
Q ss_pred CCCChhHHHHHHHHHHHhCCCch
Q 001326 210 NHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 210 ~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
.. .--+++..-|++++.|.--
T Consensus 164 ~l--~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 164 SV--TISRQIIDFLLVNLPREYS 184 (214)
T ss_pred CC--CCCHHHHHHHHHHccCCHH
Confidence 11 1112444555555555443
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00039 Score=84.25 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=106.9
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|.....++|.+..++.|..++..+. -.+.+.++|..|+||||+|+.++..+-...... ... ...+.-...+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~~-------~~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PTP-------EPCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CCC-------CCCcccHHHH
Confidence 4455789999999999999987432 235677999999999999999999764321000 000 0011111111
Q ss_pred HHHHHHhcc----cc-cccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCc-
Q 001326 108 RVLSEIFEE----NI-KIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDK- 174 (1099)
Q Consensus 108 ~ll~~l~~~----~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~- 174 (1099)
.+....... .. .....+.++.+.+.+ .+++-++|+|+++.. +..+.|+..+........+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 111110000 00 000001111111111 244568899999865 44666665554433445555555433
Q ss_pred ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 175 WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 175 ~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
.+.... ......+++..++.++....+.+.+-.....- -.+.+..|+++++|.+..+.
T Consensus 163 ~llpTI-rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 163 RVLPTI-ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhHHH-HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 333222 11122788999999998888877664322111 12456778899999876443
No 145
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.72 E-value=7e-05 Score=83.58 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=62.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCC---hhH----
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPC---LPE---- 127 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~---~~~---- 127 (1099)
+.++|+|++|.|||||++.+++.+..+ |+..+|+..+.+ ....+..+++.++..+........... +..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE---R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE---RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC---CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 568899999999999999999987655 998999886644 335788888888665544332221110 111
Q ss_pred HHH-HHhcCCeEEEEEeCCCChhH
Q 001326 128 YIG-ERLRRMKVLIVLDDVNKVGQ 150 (1099)
Q Consensus 128 ~l~-~~L~~kr~LlVLDdv~~~~~ 150 (1099)
..+ .+-.+++++|++|++.....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHH
Confidence 111 12358999999999976543
No 146
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0013 Score=79.66 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=106.1
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-----------------------Cc
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE-----------------------FE 84 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----------------------f~ 84 (1099)
|...+.++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+...+... |+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 445678999999999999998643 234667899999999999999998865321 11
Q ss_pred eeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCC
Q 001326 85 GRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFG 162 (1099)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 162 (1099)
...+ . . . ...++..+. +++.++... -..+++=++|+|+++... ..+.|...+....
T Consensus 92 ~~~l-d-~---~-~~~~vd~Ir-~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IHEL-D-A---A-SNNSVDDIR-NLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eEEe-c-c---c-ccCCHHHHH-HHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1100 0 0 0 111121211 111111000 012344577999997653 4666666555444
Q ss_pred CCCeEEEEe-CCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 163 PGSRIIITT-RDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 163 ~gsrIiiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
..+.+|++| +...+..... ....++++++++.++..+.+.+.+-...... -.+.+..|++.++|..--
T Consensus 150 ~~tifIL~tt~~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 150 SYAIFILATTEKHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCeEEEEEeCCchhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 566666555 4444443321 1223799999999999998887664332211 124566788888886653
No 147
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.70 E-value=0.00064 Score=80.33 Aligned_cols=199 Identities=17% Similarity=0.179 Sum_probs=108.0
Q ss_pred cccchhhH--HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc--eeEEEEeccccccCCCCHHHHHHHH
Q 001326 34 LVGLSSRI--EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE--GRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 34 ~vGr~~~~--~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
++|-..+. ..+.++..........+.|+|.+|+|||+||+++.+.+..++. .+.|+. ...+..++
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~ 193 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDF 193 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHH
Confidence 55655442 2333333322223456889999999999999999998876642 233442 11223333
Q ss_pred HHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----HHHHHhcCCCC-CCCCCeEEEEeCCcc--c------
Q 001326 110 LSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----QLKYLAGGIDR-FGPGSRIIITTRDKW--I------ 176 (1099)
Q Consensus 110 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~~--v------ 176 (1099)
...+... ....+.+.++. .-+|||||++... ..+.+...+.. ...|..||+||.... +
T Consensus 194 ~~~~~~~--------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 194 VNALRNN--------TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHHcC--------cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 3333211 12334445553 4478899996431 12233222211 123556888876431 1
Q ss_pred -ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH----HHhhh--cCC--CCHH
Q 001326 177 -LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT----VLGSF--FHQ--KSKP 247 (1099)
Q Consensus 177 -~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~----~lg~~--L~~--~~~~ 247 (1099)
...+ ....++++++++.++..+++...+-.... .--.++..-|++.+.|..-.+. .+..+ +.+ -+.+
T Consensus 265 l~SRl--~~gl~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~ 340 (450)
T PRK00149 265 LRSRF--EWGLTVDIEPPDLETRIAILKKKAEEEGI--DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLE 340 (450)
T ss_pred HHhHh--cCCeeEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHH
Confidence 1122 12237999999999999999988753221 1123556667777777665432 22211 112 2455
Q ss_pred HHHHHHHHH
Q 001326 248 DWEKALEKI 256 (1099)
Q Consensus 248 ~w~~~l~~l 256 (1099)
..+.++..+
T Consensus 341 ~~~~~l~~~ 349 (450)
T PRK00149 341 LAKEALKDL 349 (450)
T ss_pred HHHHHHHHh
Confidence 566666654
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0011 Score=78.17 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=104.6
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---C-c-----------------ee
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---F-E-----------------GR 86 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---f-~-----------------~~ 86 (1099)
|.....++|-+.-++.+..++..+. -.+.+.++|+.|+||||+|+.++..+... . + ..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 4456789999999999999996432 34566789999999999999998865321 0 0 00
Q ss_pred EEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH-----hcCCeEEEEEeCCCCh--hHHHHHhcCCC
Q 001326 87 CFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER-----LRRMKVLIVLDDVNKV--GQLKYLAGGID 159 (1099)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~ 159 (1099)
..+. .+ ...++.. .+.+.+. ..+++-++|+|+++.. ...+.|...+.
T Consensus 91 ~eid----aa-s~~gvd~---------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE 144 (486)
T PRK14953 91 IEID----AA-SNRGIDD---------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE 144 (486)
T ss_pred EEEe----Cc-cCCCHHH---------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh
Confidence 0010 00 0011111 1122221 1356679999999755 34555655554
Q ss_pred CCCCCCeEEEEe-CCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 160 RFGPGSRIIITT-RDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 160 ~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
...+...+|++| +...+..... .....+.+.+++.++....+...+-..... .-.+.+..++..++|.+..+
T Consensus 145 epp~~~v~Il~tt~~~kl~~tI~-SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 145 EPPPRTIFILCTTEYDKIPPTIL-SRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDA 217 (486)
T ss_pred cCCCCeEEEEEECCHHHHHHHHH-HhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 444455666555 3333322211 111278999999999998888766432221 11244566888888877544
No 149
>CHL00181 cbbX CbbX; Provisional
Probab=97.67 E-value=0.00089 Score=73.52 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=82.4
Q ss_pred ccccchhhHHHHHHhhc------------CCC-CCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-C-ceeEEEEecccccc
Q 001326 33 GLVGLSSRIEKLISLLC------------VGF-PDFRIVGIWGMAGIGKTTLAGAIFNLISWE-F-EGRCFVSNVRVESE 97 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~------------~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~~~ 97 (1099)
.++|.+...+++.++.. ... .....+.++|.+|+||||+|+.+++..... + ...-|+.. +
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v----~- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV----T- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe----c-
Confidence 47888777776655432 011 123347799999999999999998865321 1 11112220 1
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh-----------hHHHHHhcCCCCCCCCCe
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV-----------GQLKYLAGGIDRFGPGSR 166 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsr 166 (1099)
.. .+.......... .....+.+. ..-+|+||+++.. +..+.|.........+.+
T Consensus 99 ----~~----~l~~~~~g~~~~----~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 99 ----RD----DLVGQYIGHTAP----KTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred ----HH----HHHHHHhccchH----HHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 11 122222111100 011222222 2348899999642 234445444443344556
Q ss_pred EEEEeCCccccccc--------CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 167 IIITTRDKWILDNF--------GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 167 IiiTTR~~~v~~~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
||+++......... ..+. .+++++++.+|..+++...+-+
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~--~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIAN--HVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCc--eEEcCCcCHHHHHHHHHHHHHH
Confidence 77776533221100 1233 7999999999999999887643
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=9.3e-06 Score=98.92 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=93.9
Q ss_pred CCCCEEEccCCCCc--ccCccc-ccCCCCcEEEccCCCCCC-cccccccCCCCCceeecCCCCCccCCccccCCCCCcEE
Q 001326 640 EPLEKLALDRSGIK--ELPSSI-ENLEGLKELQLMCCSKLG-SLPESLGNLKSLVVLDANRSAILQLPSSIADLNKLREL 715 (1099)
Q Consensus 640 ~~L~~L~L~~~~l~--~lp~~l-~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 715 (1099)
.+|++|+++|...- ..|..+ .-||+|++|.+.+-.... .+.....++++|..||+++++++.+ ..++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46677777664322 222223 246778888777644332 2334456778888888888888877 677888888888
Q ss_pred EccCCCCCCCC---CCCCCCCCCEEeccCCCCcccc-------cccCCCCCCCEEEccCCCCc--cccccccCCCCCCEE
Q 001326 716 CLSGCRGFALP---PLSTLSSLRTLTLSGCGIIEIS-------QDICCLSSLESLNLAENNFE--SLPSSISQLSCLRRL 783 (1099)
Q Consensus 716 ~L~~~~~~~l~---~l~~l~~L~~L~Ls~~~l~~l~-------~~~~~l~sL~~L~L~~n~l~--~lp~~l~~l~~L~~L 783 (1099)
.+.+-.+.... .+.+|.+|+.||+|.......+ +.-..+|+|+.||.|++.+. .+...+..-|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 88776655433 3667888888888876554322 12234788999999888776 233344455666666
Q ss_pred eecCC
Q 001326 784 CLRNC 788 (1099)
Q Consensus 784 ~L~~c 788 (1099)
.+-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 55543
No 151
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.67 E-value=0.00036 Score=73.55 Aligned_cols=191 Identities=19% Similarity=0.203 Sum_probs=114.7
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh--ccCceeEEEEeccccccCCCCHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS--WEFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
|...++++|-+..+.-|.+.+.. .+......+|++|.|||+-|++++..+- +-|..++.-.|. | ...|..-.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---S-derGisvv 105 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---S-DERGISVV 105 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---c-ccccccch
Confidence 45567899999999999988864 5677888999999999999999988653 334444332222 2 23333211
Q ss_pred HHHH--HHHHhcccccccCCChhHHHHHHhcCCe-EEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCccc-ccc
Q 001326 106 RERV--LSEIFEENIKIETPCLPEYIGERLRRMK-VLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKWI-LDN 179 (1099)
Q Consensus 106 ~~~l--l~~l~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v-~~~ 179 (1099)
...+ ...+........ .. ..++ -.||||+.+.. +.|..|......+...+|.|..+-.... ...
T Consensus 106 r~Kik~fakl~~~~~~~~---------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 106 REKIKNFAKLTVLLKRSD---------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhhcCHHHHhhcccccc---------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 1111 111111110000 00 0112 47889999865 4588888777766667776654444322 221
Q ss_pred cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 001326 180 FGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP-LALTVL 237 (1099)
Q Consensus 180 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l 237 (1099)
. +.....|+.++|.+++...-+...|-+++..- ..+..+.|+++++|-- -|+.++
T Consensus 176 i-~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 176 L-VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred H-HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 11122689999999999888888875544322 2356677888888844 344444
No 152
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=5.2e-05 Score=56.85 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCCEEeccCCCCcccccccCCCCCCCEEEccCCCCcccc
Q 001326 733 SLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLP 771 (1099)
Q Consensus 733 ~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp 771 (1099)
+|++|++++|++.++|..+..+++|+.|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555556666666666666555443
No 153
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.001 Score=79.79 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=108.0
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--Cc--eeEEEEeccccc------
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE--FE--GRCFVSNVRVES------ 96 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~--~~~~~~~~~~~~------ 96 (1099)
.|...++++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .. .+......+...
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d 89 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD 89 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC
Confidence 3556688999999999999999643 235668899999999999999999875321 00 000000000000
Q ss_pred ------cCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEE
Q 001326 97 ------ENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRII 168 (1099)
Q Consensus 97 ------~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIi 168 (1099)
....++..+. ++...+ ......+++-++|+|+++... .++.|...+....+...+|
T Consensus 90 v~~idgas~~~vddIr-~l~e~~---------------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 90 VIEIDGASNTSVQDVR-QIKEEI---------------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred eEEecCcccCCHHHHH-HHHHHH---------------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 0001111111 011000 000123455678899997554 4667776665545566666
Q ss_pred EEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 169 ITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 169 iTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
++|.+ ..+..... .....++.++++.++..+.+...+......- -.+.+..|++.++|.+-.+
T Consensus 154 ~~tte~~kL~~tI~-SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 154 FATTEVHKLPATIK-SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EecCChHHhHHHHH-HhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 66543 33322211 1122689999999999888887764333221 2255666888889877543
No 154
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.65 E-value=0.0012 Score=71.69 Aligned_cols=169 Identities=18% Similarity=0.176 Sum_probs=104.5
Q ss_pred CCCccccchhhHHHHHHhhcCCCCC-EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPD-FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
..+.+.+|+.++..+..++...+.. ..+|.|+|.+|.|||.+.+++.+...- ..+|+..+ +.+....+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~-----ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCV-----ECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehH-----HhccHHHHHHH
Confidence 3567899999999999999755443 456689999999999999999997633 35677644 44567777888
Q ss_pred HHHHHh-cccccc-cCC--C----hhHHHHH--Hhc--CCeEEEEEeCCCChhHHHH-----HhcCCCCCCCCCeEEEEe
Q 001326 109 VLSEIF-EENIKI-ETP--C----LPEYIGE--RLR--RMKVLIVLDDVNKVGQLKY-----LAGGIDRFGPGSRIIITT 171 (1099)
Q Consensus 109 ll~~l~-~~~~~~-~~~--~----~~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~-----l~~~~~~~~~gsrIiiTT 171 (1099)
|+.+.. ...+.. ... + ....+.+ ... ++.++||||+++...+.+. +..-........-+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 888774 221111 111 1 1222222 122 4699999999986654332 111100001112334444
Q ss_pred CCc---ccccccCCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 172 RDK---WILDNFGVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 172 R~~---~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
-.. .-...+|.....++..+.-+.+|..+++.+.-
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 322 22333565554478889999999999986643
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.63 E-value=0.00041 Score=87.89 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 11 PIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 11 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+++...++.++-.. ..-+.++||+++++++.+.|... ...-+.++|.+|+|||++|+.+++++.
T Consensus 161 ~l~~~~~~l~~~a~~---~~~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 161 TLEEFGTNLTKEAID---GNLDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred HHHHHHHHHHHHHHc---CCCCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 556666666554222 12356999999999999999743 233446999999999999999999764
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.00088 Score=78.11 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=86.1
Q ss_pred ccccchhhHH--HHHHhhcC---C-CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 33 GLVGLSSRIE--KLISLLCV---G-FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 33 ~~vGr~~~~~--~l~~~l~~---~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
.++|-..++. .+.++... . ......+.|+|..|+|||+||+++++.+..+...+.|+. ...+.
T Consensus 113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~ 181 (445)
T PRK12422 113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFT 181 (445)
T ss_pred eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHH
Confidence 3447666543 34444321 1 112356789999999999999999998765444445553 12233
Q ss_pred HHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----HHHHHhcCCCC-CCCCCeEEEEeCCc-ccc---
Q 001326 107 ERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----QLKYLAGGIDR-FGPGSRIIITTRDK-WIL--- 177 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~-~v~--- 177 (1099)
..+...+... ....+++.++. .-+|++||++... ..+.+...++. ...|..||+||... .-.
T Consensus 182 ~~~~~~l~~~--------~~~~f~~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 182 EHLVSAIRSG--------EMQRFRQFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred HHHHHHHhcc--------hHHHHHHHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 3333333211 12334444443 3477889986432 11222222111 12456788888542 111
Q ss_pred -ccc--CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 178 -DNF--GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 178 -~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
... ......++++++++.++..+++.+++-.
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 111 0122237899999999999999887743
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.59 E-value=0.00053 Score=87.12 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=40.7
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.-+.+|||+.+++++.+.|... ...-+.++|.+|+|||++|+.+.+++..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3467999999999999998643 2344458999999999999999998754
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.59 E-value=0.00076 Score=85.34 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 11 PIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 11 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+++...+..++.. +..-+.++||+.+++++.+.|... ...-+.++|.+|+|||++|+.+..++..
T Consensus 160 ~l~~~~~~l~~~~r---~~~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 160 ALKKYTIDLTERAE---QGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHhhhHHHHHh---cCCCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 34444444444432 233467999999999999998643 2335569999999999999999998743
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.57 E-value=4.1e-06 Score=77.08 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=75.5
Q ss_pred CceeecCCCCCccCCc---cccCCCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCcccccccCCCCCCCEEEcc
Q 001326 689 LVVLDANRSAILQLPS---SIADLNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLA 763 (1099)
Q Consensus 689 L~~L~l~~~~i~~lp~---~~~~l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~ 763 (1099)
+..+++++|.+..++. .+.....|+..+|++|.+..+|. ...++.++.|++++|.++++|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 4455666666554443 33444556666777777777665 345678888999999999999888899999999999
Q ss_pred CCCCccccccccCCCCCCEEeecCCC
Q 001326 764 ENNFESLPSSISQLSCLRRLCLRNCN 789 (1099)
Q Consensus 764 ~n~l~~lp~~l~~l~~L~~L~L~~c~ 789 (1099)
.|.+...|..+..|.+|-.|+..+|.
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCc
Confidence 99998888888878888888877753
No 160
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00043 Score=75.27 Aligned_cols=102 Identities=26% Similarity=0.247 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRR 135 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~ 135 (1099)
..+.++|.+|+|||.||.++++.+..+...++|+. ...+...+....... .......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~-----~~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS-----GKEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc-----ccccHHHHHHHhcC
Confidence 45789999999999999999998876644455553 122333333222111 01112334445554
Q ss_pred CeEEEEEeCCC--ChhHHH--HHhcCCCC-CCCCCeEEEEeCCc
Q 001326 136 MKVLIVLDDVN--KVGQLK--YLAGGIDR-FGPGSRIIITTRDK 174 (1099)
Q Consensus 136 kr~LlVLDdv~--~~~~~~--~l~~~~~~-~~~gsrIiiTTR~~ 174 (1099)
-. ||||||+. ...+|. .+...++. ...|..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 88999993 233332 23322221 23566788988643
No 161
>CHL00176 ftsH cell division protein; Validated
Probab=97.55 E-value=0.001 Score=80.75 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=97.9
Q ss_pred CCCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCC
Q 001326 30 DFKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENG 99 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 99 (1099)
..++++|.++..+++.+.+.. +..-.+-|.++|++|+|||++|++++......| +. + +
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-i---s--- 248 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-I---S--- 248 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-c---c---
Confidence 346789999888877766531 112245688999999999999999998753322 21 0 0
Q ss_pred CCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCCC--
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDRF-- 161 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~-- 161 (1099)
...+...... .........+.+.....+.+|+|||++... .+..+....+.+
T Consensus 249 --~s~f~~~~~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 249 --GSEFVEMFVG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHHHHHhhh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0011111000 000002333444455678999999996431 133444333222
Q ss_pred CCCCeEEEEeCCcccccc-----cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCC
Q 001326 162 GPGSRIIITTRDKWILDN-----FGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANG 229 (1099)
Q Consensus 162 ~~gsrIiiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 229 (1099)
..+..||.||........ -..+. .+.++..+.++-.++++.++-...... ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~--~I~v~lPd~~~R~~IL~~~l~~~~~~~---d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDR--QITVSLPDREGRLDILKVHARNKKLSP---DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCce--EEEECCCCHHHHHHHHHHHHhhcccch---hHHHHHHHhcCCC
Confidence 235566667755433221 11234 789999999999999988875422111 1233456666666
No 162
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0021 Score=77.32 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=106.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
.|...+++||.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+...+-..-... . ...+.-...
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-----~-----~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-----G-----EPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----C-----CCCCccHHH
Confidence 35567899999999999999987432 346677899999999999999988653211000 0 000000011
Q ss_pred HHHHHHHhcc----cccc-cCCChhHHHHHH-----hcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEe-CC
Q 001326 107 ERVLSEIFEE----NIKI-ETPCLPEYIGER-----LRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITT-RD 173 (1099)
Q Consensus 107 ~~ll~~l~~~----~~~~-~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~ 173 (1099)
+.+....... +... ...+....+.+. ..+++-++|+|+++.. .....|...+....+...+|++| ..
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1110000000 0000 000011122222 2345668899999865 44666665554434455555544 44
Q ss_pred cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchH
Q 001326 174 KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 174 ~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
..+..... .....++..+++.++..+.+...+-+.....+ .+.+..|++.++|.+..
T Consensus 160 ~ki~~tI~-SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 160 HKIPATIL-SRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred hhCcHHHH-hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 33332221 11226889999999998888877643322111 24566778888887753
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0015 Score=77.56 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=93.9
Q ss_pred cccchhhHH--HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEeccccccCCCCHHHHHHHH
Q 001326 34 LVGLSSRIE--KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 34 ~vGr~~~~~--~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
++|-..++. .+..+..........+.|||..|.|||.|++++++.+...+ -.+.|+. ...+..++
T Consensus 291 vvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el 359 (617)
T PRK14086 291 VIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEF 359 (617)
T ss_pred cCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHH
Confidence 446555422 23333332222234588999999999999999999876533 2234543 12233333
Q ss_pred HHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh---hHH-HHHhcCCCC-CCCCCeEEEEeCCc--c-------
Q 001326 110 LSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV---GQL-KYLAGGIDR-FGPGSRIIITTRDK--W------- 175 (1099)
Q Consensus 110 l~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR~~--~------- 175 (1099)
...+... ....+++++++- =+|||||++.. +.+ +.|...++. ...|..|||||+.. .
T Consensus 360 ~~al~~~--------~~~~f~~~y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~r 430 (617)
T PRK14086 360 INSIRDG--------KGDSFRRRYREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDR 430 (617)
T ss_pred HHHHHhc--------cHHHHHHHhhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHH
Confidence 3333211 123344444443 47888999643 222 222222221 13466788888753 1
Q ss_pred cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 176 ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 176 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
+...+ ....+++|+..+.+.-.+++.+++-.....- -.+++.-|++.+.+..
T Consensus 431 L~SRf--~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l--~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 431 LRNRF--EWGLITDVQPPELETRIAILRKKAVQEQLNA--PPEVLEFIASRISRNI 482 (617)
T ss_pred HHhhh--hcCceEEcCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhccCCH
Confidence 11122 2233899999999999999998875432211 1244444555544443
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0025 Score=71.21 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=59.9
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCC
Q 001326 135 RMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENH 211 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 211 (1099)
+.|++ |+|+++.. +....|...+....+++.+|+||.+.. +.... ......+.+.+++.+++.+.+..... ..
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI-~SRc~~~~~~~~~~~~~~~~L~~~~~--~~ 181 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI-KSRCQQQACPLPSNEESLQWLQQALP--ES 181 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH-HhhceeeeCCCcCHHHHHHHHHHhcc--cC
Confidence 34555 67999854 445556555544446677777776653 33232 11223799999999999999876531 11
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 212 CPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 212 ~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
. .+.+..++..++|.|+....+
T Consensus 182 ~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C----hHHHHHHHHHcCCCHHHHHHH
Confidence 1 234556789999999865544
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.50 E-value=0.00087 Score=80.20 Aligned_cols=174 Identities=23% Similarity=0.251 Sum_probs=94.2
Q ss_pred CCccccchhhHHHHHHhhc---C-------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 31 FKGLVGLSSRIEKLISLLC---V-------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
.++++|.+...+++.+++. . +..-.+-+.++|++|+|||++|++++......| +. + +
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i---~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I---S---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c---c----
Confidence 3568899887777666543 1 122245588999999999999999998753322 11 0 0
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCCC--C
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDRF--G 162 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 162 (1099)
...+... .... ........+.......+.+|+|||++... .+..+....+.. .
T Consensus 121 -~~~~~~~----~~g~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 -GSDFVEM----FVGV----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH----Hhcc----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 0011110 0000 00002223333334567899999995431 122333333222 2
Q ss_pred CCCeEEEEeCCccccc-----ccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 163 PGSRIIITTRDKWILD-----NFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 163 ~gsrIiiTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
.+-.||.||....... .-..+. .+.++..+.++-.+++..++.......+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~--~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDR--QVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceE--EEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 3445566665443222 112344 7899999999999999887643322211 12346777777744
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=0.00086 Score=64.57 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 167
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0006 Score=79.93 Aligned_cols=156 Identities=23% Similarity=0.280 Sum_probs=89.8
Q ss_pred ccccchhhHHHHHHhhcC----CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHH
Q 001326 33 GLVGLSSRIEKLISLLCV----GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRER 108 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (1099)
+-+|.++..+++.++|.. ..-.-.+++++|++|+|||+||+.++.-+...|-... +--+|..+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEA------------ 390 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEA------------ 390 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHH------------
Confidence 378999999999998862 2223479999999999999999999998877764221 22222221
Q ss_pred HHHHHhccccc-ccC-CC-hhHHHHHHhcCCeEEEEEeCCCChhH------HHHHhcCCCC-----C--------CCCCe
Q 001326 109 VLSEIFEENIK-IET-PC-LPEYIGERLRRMKVLIVLDDVNKVGQ------LKYLAGGIDR-----F--------GPGSR 166 (1099)
Q Consensus 109 ll~~l~~~~~~-~~~-~~-~~~~l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~-----~--------~~gsr 166 (1099)
++.+.... +.. +. ..+.+++. +-+.-+++||.||.... -.+|+..++- | ..=|.
T Consensus 391 ---EIRGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 391 ---EIRGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ---HhccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 11111110 111 11 23333332 45667899999975431 2222222210 0 01255
Q ss_pred EE-EEeCCc-c-cc-cccCCCCcceEecCCCCHHHHHHHHhhhhc
Q 001326 167 II-ITTRDK-W-IL-DNFGVHSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 167 Ii-iTTR~~-~-v~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
|+ |||-+. . +. ..+.... ++++.+-+++|-.++-++|..
T Consensus 467 VmFiaTANsl~tIP~PLlDRME--iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRME--VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhccee--eeeecCCChHHHHHHHHHhcc
Confidence 54 555433 2 11 1112223 899999999999988877764
No 168
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0021 Score=69.52 Aligned_cols=177 Identities=22% Similarity=0.268 Sum_probs=106.4
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE 95 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 95 (1099)
|......+=|-++.+++|.+.+... -+..+-|.+||++|.|||-||++|+++....| +-.+
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvv--- 217 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVV--- 217 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEec---
Confidence 3344566788999999999887522 13467788999999999999999999876544 3211
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc-CCeEEEEEeCCCChh----------------HHHHHhcCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR-RMKVLIVLDDVNKVG----------------QLKYLAGGI 158 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~~----------------~~~~l~~~~ 158 (1099)
+. .+.+.. .++... +...+.+.-+ ..+..|.+|.+|... .+-+|+..+
T Consensus 218 -----gS-ElVqKY----iGEGaR-----lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 218 -----GS-ELVQKY----IGEGAR-----LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred -----cH-HHHHHH----hccchH-----HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 11 111111 111100 2233333333 467899999985331 133455555
Q ss_pred CCCCC--CCeEEEEeCCcccccc-----cCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCC
Q 001326 159 DRFGP--GSRIIITTRDKWILDN-----FGVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGN 230 (1099)
Q Consensus 159 ~~~~~--gsrIiiTTR~~~v~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~Gl 230 (1099)
+.|.+ ..+||..|-...++.- -..+. .++++..+.+.-.++|.-|+.+-.... -+++. +++.+.|.
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DR--kIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~ 356 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDR--KIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGF 356 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccc--eeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCC
Confidence 55544 3588877755544332 12355 789998888888999998886533322 23433 44555555
Q ss_pred ch
Q 001326 231 PL 232 (1099)
Q Consensus 231 PL 232 (1099)
--
T Consensus 357 sG 358 (406)
T COG1222 357 SG 358 (406)
T ss_pred ch
Confidence 43
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0046 Score=64.10 Aligned_cols=201 Identities=15% Similarity=0.116 Sum_probs=110.2
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERV 109 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 109 (1099)
.+..+++...+-+-+...-..-+++-+++.++|.-|.|||+++|++....-..=...+++++ ...+...+...+
T Consensus 26 ~~~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~------~~~s~~~~~~ai 99 (269)
T COG3267 26 QPGLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK------PTLSDATLLEAI 99 (269)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC------cchhHHHHHHHH
Confidence 34455555555444433322224556799999999999999999666544322222233321 334455667777
Q ss_pred HHHHhcccccccCCC-hhHHHHHHh-----cCCe-EEEEEeCCCCh--hHHHHHh--cCCC-CCCCCCeEEEEeCCccc-
Q 001326 110 LSEIFEENIKIETPC-LPEYIGERL-----RRMK-VLIVLDDVNKV--GQLKYLA--GGID-RFGPGSRIIITTRDKWI- 176 (1099)
Q Consensus 110 l~~l~~~~~~~~~~~-~~~~l~~~L-----~~kr-~LlVLDdv~~~--~~~~~l~--~~~~-~~~~gsrIiiTTR~~~v- 176 (1099)
..++... .. .... ....+.+.| +++| +.+++||..+. +.++.+. .... ....--+|+..-..+-.
T Consensus 100 ~~~l~~~-p~-~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~ 177 (269)
T COG3267 100 VADLESQ-PK-VNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRP 177 (269)
T ss_pred HHHhccC-cc-chhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccch
Confidence 7776652 11 1111 222222222 4677 99999998644 3344332 2221 11111234443332211
Q ss_pred ------ccccCCCCcce-EecCCCCHHHHHHHHhhhhcCCCCCChhH-HHHHHHHHHHhCCCchHHHHHhh
Q 001326 177 ------LDNFGVHSSNI-YEVNGLEYDEARELFCNYAFKENHCPDDL-LALSKCVLKYANGNPLALTVLGS 239 (1099)
Q Consensus 177 ------~~~~~~~~~~~-~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~GlPLal~~lg~ 239 (1099)
....+ ....+ |++++++.++...++.++.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 178 ~lr~~~l~e~~-~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 178 RLRLPVLRELE-QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hhchHHHHhhh-heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11111 11114 99999999999999988875543333322 24455788889999999877655
No 170
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0017 Score=78.53 Aligned_cols=188 Identities=14% Similarity=0.152 Sum_probs=104.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc--e-e---E-------------
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE--G-R---C------------- 87 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~-~---~------------- 87 (1099)
.|...+++||.+..++.|...+..+ .-.+.+.++|..|+||||+|+.+.+.+-..-. . . |
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3556689999998889999988643 22456789999999999999999886532100 0 0 0
Q ss_pred EEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCC
Q 001326 88 FVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGS 165 (1099)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs 165 (1099)
|+. +.. . ...++.++ +++...+.. .-..+++=++|+|+++... ..+.|...+....+..
T Consensus 90 ~~e-id~-~-s~~~v~~i-r~l~~~~~~---------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~ 150 (576)
T PRK14965 90 VFE-IDG-A-SNTGVDDI-RELRENVKY---------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHV 150 (576)
T ss_pred eee-eec-c-CccCHHHH-HHHHHHHHh---------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCe
Confidence 000 000 0 01112111 111111100 0012344578899997653 4555655554434566
Q ss_pred eEEEEe-CCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 001326 166 RIIITT-RDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTVL 237 (1099)
Q Consensus 166 rIiiTT-R~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 237 (1099)
.+|++| ....+..... .....++++.++.++....+...+-..... --.+....|++.++|..- |+..+
T Consensus 151 ~fIl~t~~~~kl~~tI~-SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 151 KFIFATTEPHKVPITIL-SRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEEEeCChhhhhHHHH-HhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666555 4444433221 112268899999999888887655332211 112455668888888653 44433
No 171
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00029 Score=69.76 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=53.7
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCC-CCCCCEEEccCCCCcccc--ccccCCCCCCEEeec
Q 001326 710 NKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICC-LSSLESLNLAENNFESLP--SSISQLSCLRRLCLR 786 (1099)
Q Consensus 710 ~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~-l~sL~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~ 786 (1099)
.....++|++|.+..++.+..++.|..|.+++|.|+.+.+.+.. +++|..|.|.+|++..+- ..+..+|+|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34556667777766666777777777777777777776665433 566777777777766443 235567777777777
Q ss_pred CCCC
Q 001326 787 NCNM 790 (1099)
Q Consensus 787 ~c~~ 790 (1099)
+|+.
T Consensus 122 ~Npv 125 (233)
T KOG1644|consen 122 GNPV 125 (233)
T ss_pred CCch
Confidence 7653
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00093 Score=82.55 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 11 PIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 11 ~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+++...++.++-... .-+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.+++++.
T Consensus 168 ~l~~~~~~l~~~a~~g---~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 168 RMENFTTNLNQLARVG---GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred HHHHHHHhHHHHHHcC---CCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4555555554433222 23469999999999999887532 23345899999999999999998763
No 173
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.40 E-value=0.0022 Score=73.93 Aligned_cols=162 Identities=20% Similarity=0.121 Sum_probs=94.1
Q ss_pred hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccccc
Q 001326 40 RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIK 119 (1099)
Q Consensus 40 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 119 (1099)
-+.++.+.+.. ...++.|.|+-++||||+++.+....... .+|+....... ... .+ .+.+..
T Consensus 25 ~~~~l~~~~~~---~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~-~~~---~l-~d~~~~------- 86 (398)
T COG1373 25 LLPRLIKKLDL---RPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRL-DRI---EL-LDLLRA------- 86 (398)
T ss_pred hhHHHHhhccc---CCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhc-chh---hH-HHHHHH-------
Confidence 34444444432 22299999999999999997766655444 45553211111 111 11 111111
Q ss_pred ccCCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccccc------cCCCCcceEecCCC
Q 001326 120 IETPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWILDN------FGVHSSNIYEVNGL 193 (1099)
Q Consensus 120 ~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~------~~~~~~~~~~l~~L 193 (1099)
+.+.-..++..|+||.|.....|+.....+...++. +|+||+-+...... .|... .+++-+|
T Consensus 87 ---------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~--~~~l~Pl 154 (398)
T COG1373 87 ---------YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGK--DLELYPL 154 (398)
T ss_pred ---------HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCce--eEEECCC
Confidence 111111278899999999999999877776665666 89998887654332 12222 7999999
Q ss_pred CHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 194 EYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 194 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
+..|-..+-...+ .+. .... .-+-.-..||.|-++..-
T Consensus 155 SF~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 155 SFREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred CHHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhCc
Confidence 9999876543111 000 1111 222234469999887643
No 174
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.36 E-value=0.00013 Score=54.63 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=17.0
Q ss_pred CCceeecCCCCCccCCccccCCCCCcEEEccCCCCCC
Q 001326 688 SLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFA 724 (1099)
Q Consensus 688 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~ 724 (1099)
+|++|++++|.++.+|..++++++|+.|++++|++..
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4445555555555554444444444444444444433
No 175
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.36 E-value=0.0023 Score=75.09 Aligned_cols=153 Identities=17% Similarity=0.103 Sum_probs=82.7
Q ss_pred CccccchhhHHHHHHhhc--------CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 32 KGLVGLSSRIEKLISLLC--------VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
+++.|.+...+.+.+... .+-...+-|.++|++|.|||.+|+++.+.+...| +..+.........+-.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChH
Confidence 568888766655554321 1223456788999999999999999999865432 2111100000000000
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------H----HHHHhcCCCCCCCCCeEEE
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------Q----LKYLAGGIDRFGPGSRIII 169 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------~----~~~l~~~~~~~~~gsrIii 169 (1099)
..- ..+.+...-...+++|++|+++..- . +..+...+.....+.-||.
T Consensus 304 ---e~~---------------l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 304 ---ESR---------------MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ---HHH---------------HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 000 1122222223478999999996321 0 1112211111123344566
Q ss_pred EeCCccccc-----ccCCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 170 TTRDKWILD-----NFGVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 170 TTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
||.+..... .-..+. .+.++..+.++-.++|..+..+
T Consensus 366 TTN~~~~Ld~allR~GRFD~--~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDE--IFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCe--EEEeCCcCHHHHHHHHHHHHhh
Confidence 775543221 112355 7899999999999999888754
No 176
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=6.9e-05 Score=91.47 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred ccccEEeccCCCCCC-ccchhh-cCCCCCCEEEccCCCCc--ccCcccccCCCCcEEEccCCCCCCcccccccCCCCCce
Q 001326 616 KYLRCLYLLDCSDLE-SFPEIL-EKMEPLEKLALDRSGIK--ELPSSIENLEGLKELQLMCCSKLGSLPESLGNLKSLVV 691 (1099)
Q Consensus 616 ~~L~~L~L~~~~~~~-~~~~~l-~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 691 (1099)
.+|++|+++|..... ..|..+ ..+|+|+.|.+.+-.+. ++..-..++++|..||+++++.... ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 345555555533321 122222 23555555555554332 2223334556666666666554333 34556666666
Q ss_pred eecCCCCCccCC--ccccCCCCCcEEEccCCCCCCCCC--------CCCCCCCCEEeccCCCCc
Q 001326 692 LDANRSAILQLP--SSIADLNKLRELCLSGCRGFALPP--------LSTLSSLRTLTLSGCGII 745 (1099)
Q Consensus 692 L~l~~~~i~~lp--~~~~~l~~L~~L~L~~~~~~~l~~--------l~~l~~L~~L~Ls~~~l~ 745 (1099)
|.+.+-.+.... ..+.+|++|+.||+|.-.....+. -..+|.|+.||.|+..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 666555554332 234556677777776655333221 334778888888877666
No 177
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0047 Score=68.73 Aligned_cols=192 Identities=16% Similarity=0.110 Sum_probs=106.1
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------CceeEEEEeccccc
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---------------FEGRCFVSNVRVES 96 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~~ 96 (1099)
+.++|.+...+.+...+..+ .-.....++|..|+||+++|.++.+.+-.. +....|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 57899999999999998643 224788899999999999999998865321 12223332110000
Q ss_pred cCCCCHHHHHHHHHHHHh--cccccccCCChhHHHHHHh-----cCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeE
Q 001326 97 ENGHRLVYLRERVLSEIF--EENIKIETPCLPEYIGERL-----RRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRI 167 (1099)
Q Consensus 97 ~~~~~~~~l~~~ll~~l~--~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrI 167 (1099)
.... -........ .........+..+.+.+.+ .+.+=++|+|+++... ....|+..+.... .+.+
T Consensus 83 --g~~~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 --GKLI---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred --cccc---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0000 000000000 0000001111122333333 2456688899997553 4445554443333 3445
Q ss_pred E-EEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 001326 168 I-ITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTV 236 (1099)
Q Consensus 168 i-iTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 236 (1099)
| +|++...+..... .....+++.++++++..+.+........ .......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~-SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIV-SRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHH-hhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHH
Confidence 5 4445444444332 2223899999999999999987642111 111135789999999976544
No 178
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=0.0001 Score=75.81 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=19.4
Q ss_pred cCCCCCcEEEeCCcccccccc----cccccCccccEEeccC
Q 001326 589 ESLPNLKILNLGFCKRLKRVS----TGICKLKYLRCLYLLD 625 (1099)
Q Consensus 589 ~~l~~L~~L~L~~~~~~~~l~----~~l~~l~~L~~L~L~~ 625 (1099)
..+..+..++||+|.+..... ..+.+-.+|+..++++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 345666777777776654332 2233444555555443
No 179
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.31 E-value=0.0032 Score=67.82 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=113.1
Q ss_pred CCccccchh---hHHHHHHhhcCC-CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeE-EEEeccccccCCCCHHHH
Q 001326 31 FKGLVGLSS---RIEKLISLLCVG-FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRC-FVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 31 ~~~~vGr~~---~~~~l~~~l~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l 105 (1099)
.+.+||-.. .+++|.+++... .....-+.|+|.+|+|||++++++.......++... .+..+....+...+...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 456777653 345666666543 334567899999999999999999986543332110 111111223467888899
Q ss_pred HHHHHHHHhcccccccCCC-hhHHHHHHhcC-CeEEEEEeCCCChh-----HHHHHhcCCCCC---CCCCeEEEEeCCc-
Q 001326 106 RERVLSEIFEENIKIETPC-LPEYIGERLRR-MKVLIVLDDVNKVG-----QLKYLAGGIDRF---GPGSRIIITTRDK- 174 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~---~~gsrIiiTTR~~- 174 (1099)
...|+.++........... ........++. +-=+||+|++.+.- +-..+...+... -.=+-|.|-|++.
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~ 192 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAY 192 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHH
Confidence 9999999987754443333 33333344443 33478899996531 111111111111 2234555666543
Q ss_pred -------ccccccCCCCcceEecCCCCHHH-HHHHHhhhhcC---CCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 175 -------WILDNFGVHSSNIYEVNGLEYDE-ARELFCNYAFK---ENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 175 -------~v~~~~~~~~~~~~~l~~L~~~e-a~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
+.+..+. .+.++....++ ...|+...... .....-...++++.|...++|+.--+..+
T Consensus 193 ~al~~D~QLa~RF~-----~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 193 RALRTDPQLASRFE-----PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHhccCHHHHhccC-----CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 3333322 46677665544 44554332211 11112234678999999999988655433
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00055 Score=66.61 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4788999999999999999999776554234444
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00048 Score=68.28 Aligned_cols=79 Identities=29% Similarity=0.376 Sum_probs=37.0
Q ss_pred CCCCcEEEccCCCCCCCCC--CCCCCCCCEEeccCCCCccccc--ccCCCCCCCEEEccCCCCccccc----cccCCCCC
Q 001326 709 LNKLRELCLSGCRGFALPP--LSTLSSLRTLTLSGCGIIEISQ--DICCLSSLESLNLAENNFESLPS----SISQLSCL 780 (1099)
Q Consensus 709 l~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~Ls~~~l~~l~~--~~~~l~sL~~L~L~~n~l~~lp~----~l~~l~~L 780 (1099)
+++|.+|.|++|.++.+.+ ...+++|+.|.+.+|++.++.+ .+..+|.|++|.+-+|.++.-+. .+..+|+|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 3444444444444443333 1223445555555555544322 24445555555555555543321 24556666
Q ss_pred CEEeecC
Q 001326 781 RRLCLRN 787 (1099)
Q Consensus 781 ~~L~L~~ 787 (1099)
+.||...
T Consensus 143 ~~LDF~k 149 (233)
T KOG1644|consen 143 RTLDFQK 149 (233)
T ss_pred eEeehhh
Confidence 6666554
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.001 Score=80.13 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=43.9
Q ss_pred CCCCCCccccchhhHHHHHHhhcCC---CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVG---FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|...++++|-+..++++..++... ....++++|+|++|+||||+++.++..+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556678999999999999998642 23456899999999999999999998653
No 183
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.0012 Score=70.44 Aligned_cols=36 Identities=28% Similarity=0.166 Sum_probs=29.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...+.++|.+|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 457889999999999999999998876655556664
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.24 E-value=0.0024 Score=80.34 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=93.7
Q ss_pred CCCccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccC
Q 001326 30 DFKGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESEN 98 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 98 (1099)
..+++.|++..++++.+++.. +-...+.|.++|++|+||||+|+++++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 345689999999998887641 112346788999999999999999999775432 1221 1100000
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCCC-CCC
Q 001326 99 GHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDRF-GPG 164 (1099)
Q Consensus 99 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~g 164 (1099)
..+.. .+- ....+.......+.+|+|||++... ....+...+... ..+
T Consensus 252 ~~g~~---~~~---------------l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 252 YYGES---EER---------------LREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred cccHH---HHH---------------HHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 00000 000 1222333334566899999985421 122233222221 233
Q ss_pred CeEEE-EeCCcc-ccccc----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 165 SRIII-TTRDKW-ILDNF----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 165 srIii-TTR~~~-v~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
..+|| ||.... +-... ..+. .+.+...+.++..+++..+.-......+ .....+++.+.|.--
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~--~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~g 382 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDR--EIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFVG 382 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccE--EEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCCH
Confidence 34444 444332 11111 1233 6788888999988888865432211111 124556677777653
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0031 Score=71.25 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCce--eEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG--RCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGE 131 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 131 (1099)
....+.|||..|.|||.|++++.+........ +.++. .......+...+... ..+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~-----------se~f~~~~v~a~~~~--------~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT-----------SEDFTNDFVKALRDN--------EMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc-----------HHHHHHHHHHHHHhh--------hHHHHHH
Confidence 46789999999999999999999987766653 33332 122333344443321 2455666
Q ss_pred HhcCCeEEEEEeCCCChh---H-HHHHhcCCCC-CCCCCeEEEEeCCcc---------cccccCCCCcceEecCCCCHHH
Q 001326 132 RLRRMKVLIVLDDVNKVG---Q-LKYLAGGIDR-FGPGSRIIITTRDKW---------ILDNFGVHSSNIYEVNGLEYDE 197 (1099)
Q Consensus 132 ~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~---------v~~~~~~~~~~~~~l~~L~~~e 197 (1099)
.. .-=++++||++-.. . -+.+...++. ...|-.||+|++... +...++ .+.++++.+++.+.
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~--~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE--WGLVVEIEPPDDET 248 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh--ceeEEeeCCCCHHH
Confidence 65 33478899995322 1 2223222221 134458999986432 111222 22389999999999
Q ss_pred HHHHHhhhhcCC--CCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 198 ARELFCNYAFKE--NHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 198 a~~Lf~~~a~~~--~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
...++.+++-.. ..+.+...-+++++.+-.+-+.-|+..+
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 999998876432 2344455555555555555555555433
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0022 Score=67.59 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH-H-hccCceeEEEEeccccccC-----CCCHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL-I-SWEFEGRCFVSNVRVESEN-----GHRLVY 104 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~-----~~~~~~ 104 (1099)
..+.++......+..++.. ..+|.+.|.+|.|||+||.++..+ + ...|+ .+++.+-.....+ ..++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~-kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVD-RIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee-EEEEeCCCCCchhhhCcCCCCHHH
Confidence 5678888888888888853 249999999999999999999874 4 34444 3444322111101 111111
Q ss_pred ----HHHHH---HHHHhcccc-c-c---cCCChhHHHHHHhcCCe---EEEEEeCCCCh--hHHHHHhcCCCCCCCCCeE
Q 001326 105 ----LRERV---LSEIFEENI-K-I---ETPCLPEYIGERLRRMK---VLIVLDDVNKV--GQLKYLAGGIDRFGPGSRI 167 (1099)
Q Consensus 105 ----l~~~l---l~~l~~~~~-~-~---~~~~~~~~l~~~L~~kr---~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI 167 (1099)
..+-+ +..+..... . . ......-.--..++++. -+||+|+..+. .+...+... .+.+|+|
T Consensus 130 K~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~ 206 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEE
Confidence 11111 111111000 0 0 00000000112345654 49999999755 455555544 4789999
Q ss_pred EEEeCCcc
Q 001326 168 IITTRDKW 175 (1099)
Q Consensus 168 iiTTR~~~ 175 (1099)
|+|--..+
T Consensus 207 v~~GD~~Q 214 (262)
T PRK10536 207 IVNGDITQ 214 (262)
T ss_pred EEeCChhh
Confidence 99876543
No 187
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.22 E-value=0.009 Score=65.86 Aligned_cols=154 Identities=21% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecccc-ccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVE-SENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGE 131 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 131 (1099)
.-++.++|||++|.|||.+|++++.++...| +-+. ..+. +..........+++..... ...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A~------------~~a-- 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREAA------------DII-- 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHHH------------HHh--
Confidence 4578999999999999999999999876543 1221 1111 1011112222222222110 000
Q ss_pred HhcCCeEEEEEeCCCCh------------hHH--HHHhcCCC----------C----CCCCCeEEEEeCCccccccc---
Q 001326 132 RLRRMKVLIVLDDVNKV------------GQL--KYLAGGID----------R----FGPGSRIIITTRDKWILDNF--- 180 (1099)
Q Consensus 132 ~L~~kr~LlVLDdv~~~------------~~~--~~l~~~~~----------~----~~~gsrIiiTTR~~~v~~~~--- 180 (1099)
.-++++.+|++||++.. .++ ..|+...+ | ..++..||+||-+...+...
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 01468899999998521 111 12322111 1 23456788888666543221
Q ss_pred -C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch
Q 001326 181 -G-VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL 232 (1099)
Q Consensus 181 -~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 232 (1099)
| .+. .| ...+.++-.+++..+.-+...+. .-..++++...|=|+
T Consensus 288 pGRfDk--~i--~lPd~e~R~eIL~~~~r~~~l~~----~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 288 DGRMEK--FY--WAPTREDRIGVVHGIFRDDGVSR----EDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCc--ee--CCCCHHHHHHHHHHHhccCCCCH----HHHHHHHHcCCCCCc
Confidence 1 232 33 34677777888776654333222 334456666666664
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.0036 Score=78.74 Aligned_cols=172 Identities=20% Similarity=0.203 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 32 KGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
+.+.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. . +
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~---~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-G---P---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h---H----
Confidence 5578888888878776541 1123456889999999999999999998654431 111 0 0
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--------------HHHHHhcCCCCC--CCC
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--------------QLKYLAGGIDRF--GPG 164 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~~g 164 (1099)
+++....++ ........+...-...+.+|++|+++... ....+...++.. ..+
T Consensus 522 -------~l~~~~vGe----se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 -------EILSKWVGE----SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred -------HHhhcccCc----HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 011110000 00001222222224567899999986321 123343333321 233
Q ss_pred CeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCc
Q 001326 165 SRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 165 srIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 231 (1099)
..||.||......... ..+. .+.++..+.++-.++|..+..+..... .++ ..+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~--~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDR--LILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccce--EEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 4556666554433211 2344 789999999999999987654322211 122 34556666654
No 189
>PRK08181 transposase; Validated
Probab=97.18 E-value=0.00062 Score=73.56 Aligned_cols=35 Identities=26% Similarity=0.119 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.-+.++|.+|+|||.||.++.+....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999997765544455653
No 190
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.14 E-value=0.0064 Score=76.70 Aligned_cols=51 Identities=29% Similarity=0.440 Sum_probs=39.6
Q ss_pred ccccchhhHHHHHHhhcC----CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 33 GLVGLSSRIEKLISLLCV----GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
..+|.+...+++.+++.. +.....++.++|++|+|||++|+++++.+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 478988888888886641 222335788999999999999999999876554
No 191
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0026 Score=67.67 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
+..+.++..........+.++|.+|+|||+||.++++.+..+-..++|+
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3444444432223345788999999999999999999876655555555
No 192
>PRK09183 transposase/IS protein; Provisional
Probab=97.12 E-value=0.00072 Score=73.20 Aligned_cols=34 Identities=26% Similarity=0.145 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
..+.|+|.+|+|||+||.++......+-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4677999999999999999988654433334444
No 193
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.12 E-value=0.0043 Score=77.48 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=98.0
Q ss_pred CCccchHHHHHHHHHHhhcccCCCCC-----------CccccchhhHHHHHHhhcC----CCCCEEEEEEEcCCCCcHHH
Q 001326 6 DPGIKPIRMGFQEYQRLKEKSVSSDF-----------KGLVGLSSRIEKLISLLCV----GFPDFRIVGIWGMAGIGKTT 70 (1099)
Q Consensus 6 ~~~~~~i~~i~~~v~~~l~~~~~~~~-----------~~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTt 70 (1099)
.+|+.+++.-.+-+..-.+.....+. +..+|.++..+++.+++.. +.....++.++|++|+||||
T Consensus 285 ~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTt 364 (784)
T PRK10787 285 SAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTS 364 (784)
T ss_pred CchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHH
Confidence 35556666666666554444333221 2389999999999888762 12234578999999999999
Q ss_pred HHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccccc-cc-CCC-hhHHHHHHhcCCeEEEEEeCCCC
Q 001326 71 LAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIK-IE-TPC-LPEYIGERLRRMKVLIVLDDVNK 147 (1099)
Q Consensus 71 LA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~~-~~~-~~~~l~~~L~~kr~LlVLDdv~~ 147 (1099)
+|+.++..+...|-... +..+ .+. .++.+.... .. ... ..+.+... ....-+|+||+++.
T Consensus 365 l~~~ia~~l~~~~~~i~-~~~~-------~d~--------~~i~g~~~~~~g~~~G~~~~~l~~~-~~~~~villDEidk 427 (784)
T PRK10787 365 LGQSIAKATGRKYVRMA-LGGV-------RDE--------AEIRGHRRTYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDK 427 (784)
T ss_pred HHHHHHHHhCCCEEEEE-cCCC-------CCH--------HHhccchhccCCCCCcHHHHHHHhc-CCCCCEEEEEChhh
Confidence 99999987655442211 1111 111 111111110 00 111 23333322 22334688999964
Q ss_pred hhH------HHHHhcCCCC---------------CCCCCeEEEEeCCcccccccCCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 148 VGQ------LKYLAGGIDR---------------FGPGSRIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 148 ~~~------~~~l~~~~~~---------------~~~gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
... ...|...+.. .-....+|.|+....+.... .+...++++.+++.+|-.++..++.
T Consensus 428 ~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aL-l~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 428 MSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPL-LDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHH-hcceeeeecCCCCHHHHHHHHHHhh
Confidence 431 2333333221 01233344455443322211 1222278999999999999887776
No 194
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.07 E-value=0.00038 Score=72.16 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=86.0
Q ss_pred CccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCC--CCc-ccccccCCCCCCCEEEccCCCCcccc--ccccCC
Q 001326 703 PSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGC--GII-EISQDICCLSSLESLNLAENNFESLP--SSISQL 777 (1099)
Q Consensus 703 p~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~--~l~-~l~~~~~~l~sL~~L~L~~n~l~~lp--~~l~~l 777 (1099)
......+..|+.|++.++.++++..+..+++|+.|.++.| .+. .++.....+|+|++|++++|.+..+. ..+..+
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 3344456777888888888888888889999999999999 444 45555666799999999999877422 245678
Q ss_pred CCCCEEeecCCCCCCCCC-------CCCCCCCeeecccCcCcccCCC
Q 001326 778 SCLRRLCLRNCNMLQSLP-------ELPLGLRHLEASNCKRLQSFPE 817 (1099)
Q Consensus 778 ~~L~~L~L~~c~~l~~lp-------~l~~sL~~L~i~~c~~L~~l~~ 817 (1099)
.+|..|++.+|.... +- .+.++|++|+-.++..-+..+.
T Consensus 116 ~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred cchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCcccccc
Confidence 889999999997666 22 3568888888888777666554
No 195
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.06 E-value=0.0043 Score=77.77 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=38.8
Q ss_pred CCccccchhhHHHHHHhhcCC------CC-CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 31 FKGLVGLSSRIEKLISLLCVG------FP-DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+.++|.+..++.+...+... .+ -..++.++|+.|+|||+||++++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 346899999988888877521 11 234678999999999999999999773
No 196
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.02 E-value=0.0065 Score=77.08 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=39.4
Q ss_pred CCccccchhhHHHHHHhhcCC------CCC-EEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 31 FKGLVGLSSRIEKLISLLCVG------FPD-FRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+.++|.+..++.+...+... .+. ..++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 456899999998888877521 111 257889999999999999999986643
No 197
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.016 Score=69.97 Aligned_cols=178 Identities=22% Similarity=0.233 Sum_probs=108.4
Q ss_pred CCCccccchhhHHHHHHhhc----------CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCC
Q 001326 30 DFKGLVGLSSRIEKLISLLC----------VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENG 99 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 99 (1099)
..+++.|.|+..++|++... .+..=++=|.++|++|.|||-||++++-+.. +=|+.. + .
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~sv----S--G 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSV----S--G 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceeee----c--h
Confidence 44789999988888777754 1223367788999999999999999998642 223331 1 0
Q ss_pred CCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCCh-----------------hHHHHHhcCCCCC
Q 001326 100 HRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKV-----------------GQLKYLAGGIDRF 161 (1099)
Q Consensus 100 ~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~~ 161 (1099)
.+++...... . .. ..+.....=...+..|.+|+++.. ..+.+|....+.+
T Consensus 378 -------SEFvE~~~g~----~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 378 -------SEFVEMFVGV----G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -------HHHHHHhccc----c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 0111111110 0 00 112222222356788888887422 1266676666655
Q ss_pred CCCCeE--EEEeCCccccccc----C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 162 GPGSRI--IITTRDKWILDNF----G-VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 162 ~~gsrI--iiTTR~~~v~~~~----~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
..+..| +-+|....++... | .+. .+.++..+.....++|..|+...... .+..++++ ++...-|.+-|-
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr--~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDR--QIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCcccc--ceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 444433 3455544443321 2 344 78999999999999999998655443 34556666 899999988653
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.01 E-value=0.0085 Score=65.25 Aligned_cols=39 Identities=31% Similarity=0.273 Sum_probs=27.3
Q ss_pred hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 40 RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 40 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
-++++..++..+ +-|.++|.+|+|||++|+++.......
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 344555555422 355689999999999999999865433
No 199
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.01 E-value=0.00026 Score=72.93 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=42.0
Q ss_pred ccCccccEEeccCCCCCCccc----hhhcCCCCCCEEEccCCCCc----ccCc-------ccccCCCCcEEEccCCCCCC
Q 001326 613 CKLKYLRCLYLLDCSDLESFP----EILEKMEPLEKLALDRSGIK----ELPS-------SIENLEGLKELQLMCCSKLG 677 (1099)
Q Consensus 613 ~~l~~L~~L~L~~~~~~~~~~----~~l~~l~~L~~L~L~~~~l~----~lp~-------~l~~l~~L~~L~L~~~~~l~ 677 (1099)
..+..++.++|++|...+... ..+.+-.+|+..+++.--.. ++++ .+-+||.|+..+|+.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 345566666666666544332 23334455555555442111 2222 23455556666666555544
Q ss_pred ccccc----ccCCCCCceeecCCCCCc
Q 001326 678 SLPES----LGNLKSLVVLDANRSAIL 700 (1099)
Q Consensus 678 ~lp~~----l~~l~~L~~L~l~~~~i~ 700 (1099)
..|+. ++..+.|.+|.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 44432 234445555555555444
No 200
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=3.3e-05 Score=71.28 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=15.7
Q ss_pred CCceeecCCCCCccCCccccCCCCCcEEEccCCCC
Q 001326 688 SLVVLDANRSAILQLPSSIADLNKLRELCLSGCRG 722 (1099)
Q Consensus 688 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~ 722 (1099)
.++.|++++|.+.++|..+..++.|+.|+++.|++
T Consensus 78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred hhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 44444444444444444444444444444444443
No 201
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.99 E-value=0.00059 Score=69.26 Aligned_cols=36 Identities=31% Similarity=0.232 Sum_probs=26.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..-+.++|..|+|||.||.++.+.+..+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456889999999999999999987655444456664
No 202
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.99 E-value=0.11 Score=58.59 Aligned_cols=104 Identities=11% Similarity=0.027 Sum_probs=66.3
Q ss_pred CeEEEEEeCCCCh-----------hHHHHHhcCCCCCCCCCeEEEEeCCccccc----ccCCCCcceEecCCCCHHHHHH
Q 001326 136 MKVLIVLDDVNKV-----------GQLKYLAGGIDRFGPGSRIIITTRDKWILD----NFGVHSSNIYEVNGLEYDEARE 200 (1099)
Q Consensus 136 kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~----~~~~~~~~~~~l~~L~~~ea~~ 200 (1099)
+|-+||+|++... .+|...+.. .+-.+||++|-+....+ .+....-..+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3679999998322 234443322 34568999998875544 2222222378899999999999
Q ss_pred HHhhhhcCCCCC-------------C-----hhHHHHHHHHHHHhCCCchHHHHHhhhcCC
Q 001326 201 LFCNYAFKENHC-------------P-----DDLLALSKCVLKYANGNPLALTVLGSFFHQ 243 (1099)
Q Consensus 201 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~lg~~L~~ 243 (1099)
+...+.-..... . .....-....++..||==.=|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887543110 0 123344456777788888888888877754
No 203
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.044 Score=60.82 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=60.9
Q ss_pred CCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCc-ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCC
Q 001326 135 RMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDK-WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENH 211 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 211 (1099)
+++=++|+|+++... .-..|+..+....+++.+|++|... .++.... .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR-SRCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH-hhheEeeCCCcCHHHHHHHHHHcC----C
Confidence 455688999998653 4455555554445677777766643 4443321 122378999999999998886531 1
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHHh
Q 001326 212 CPDDLLALSKCVLKYANGNPLALTVLG 238 (1099)
Q Consensus 212 ~~~~~~~~~~~i~~~~~GlPLal~~lg 238 (1099)
+ ...+..++..++|.|+....+.
T Consensus 187 ~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1236678999999998765544
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=96.95 E-value=0.0021 Score=64.63 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc---cCceeEEE
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISW---EFEGRCFV 89 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~~~~~ 89 (1099)
.|.|+|++|+||||+|++++++..- +|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5789999999999999999997643 35555543
No 205
>PRK06526 transposase; Provisional
Probab=96.95 E-value=0.00086 Score=72.09 Aligned_cols=28 Identities=29% Similarity=0.107 Sum_probs=23.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..-+.|+|++|+|||+||.++......+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 4567899999999999999998876544
No 206
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.94 E-value=0.0034 Score=71.64 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=41.9
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc--cCceeEEEE
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW--EFEGRCFVS 90 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~ 90 (1099)
.++++.+..++.+...+.. .+.|.++|++|+|||++|+++++.+.. .++...|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 4578888889998888863 346778999999999999999997643 344444543
No 207
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0066 Score=69.77 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=86.4
Q ss_pred CCccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 31 FKGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
..++=|++..++++.+++.. +-.-.+-|.++|++|.|||.||++++++..--| +. .+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~----is---- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LS----IS---- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Ee----ec----
Confidence 35788999999999888752 112357788999999999999999999865333 22 01
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--------H-----HHHHhcC---CCCC---
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--------Q-----LKYLAGG---IDRF--- 161 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------~-----~~~l~~~---~~~~--- 161 (1099)
.-.+.+.+.++ +...+.+...+.-..-++++++|++|-.. + ..+|... +...
T Consensus 256 -----ApeivSGvSGE----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 256 -----APEIVSGVSGE----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred -----chhhhcccCcc----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 01112221111 11113333444455678999999996321 1 1222222 2111
Q ss_pred CCCCeEE-EEeCCccccc---ccCC-CCcceEecCCCCHHHHHHHHhhhhc
Q 001326 162 GPGSRII-ITTRDKWILD---NFGV-HSSNIYEVNGLEYDEARELFCNYAF 207 (1099)
Q Consensus 162 ~~gsrIi-iTTR~~~v~~---~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~ 207 (1099)
+.+.-|| -|+|...+-. ..|. +. -+.+.-.++.+-.+++...+-
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdr--EI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDR--EICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccc--eeeecCCchHHHHHHHHHHHh
Confidence 2232333 2556655422 2222 33 577777777777777766554
No 208
>PRK06921 hypothetical protein; Provisional
Probab=96.91 E-value=0.0034 Score=68.20 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=29.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 90 (1099)
...+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678899999999999999999987665 44556664
No 209
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.076 Score=58.90 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=65.8
Q ss_pred CeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCC
Q 001326 136 MKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHC 212 (1099)
Q Consensus 136 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 212 (1099)
.+=++|+|+++.. .....|+..+....+++.+|++|.+ ..+..... .....+.+.+++++++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~-SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV-SRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH-hcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 3457788999855 3456666665554566776666554 44444332 222379999999999999886542 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHHHHHHHHHH
Q 001326 213 PDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPDWEKALEKI 256 (1099)
Q Consensus 213 ~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l 256 (1099)
. .+..++..++|.|+....+.. ......++..+..+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~~~---~~~~~~~~~~~~~l 217 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAMMK---EGGLEKYHKLERQL 217 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHHhC---CCcHHHHHHHHHHH
Confidence 1 134678999999997655432 23333444444443
No 210
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.022 Score=64.13 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=85.4
Q ss_pred Ccccc-chhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---------------------CceeEEE
Q 001326 32 KGLVG-LSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---------------------FEGRCFV 89 (1099)
Q Consensus 32 ~~~vG-r~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~ 89 (1099)
+.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+.+.+-.. +....++
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 45677 556667777777532 235677899999999999999998865321 1111111
Q ss_pred EeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH-----hcCCeEEEEEeCCCChh--HHHHHhcCCCCCC
Q 001326 90 SNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER-----LRRMKVLIVLDDVNKVG--QLKYLAGGIDRFG 162 (1099)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~ 162 (1099)
.. .. ....+.+ +..+.+. ..+.+=++|+|+++... ..+.|...+....
T Consensus 84 ~~---~~-~~i~id~---------------------ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp 138 (329)
T PRK08058 84 AP---DG-QSIKKDQ---------------------IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS 138 (329)
T ss_pred cc---cc-ccCCHHH---------------------HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC
Confidence 00 00 0011111 1111111 12344568899997553 4556666665556
Q ss_pred CCCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhh
Q 001326 163 PGSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNY 205 (1099)
Q Consensus 163 ~gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 205 (1099)
+++.+|++|.+.. +.... ......+++.+++.++..+.+...
T Consensus 139 ~~~~~Il~t~~~~~ll~TI-rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 139 GGTTAILLTENKHQILPTI-LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCceEEEEeCChHhCcHHH-HhhceeeeCCCCCHHHHHHHHHHc
Confidence 6777777776543 33322 122237999999999998888653
No 211
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.018 Score=67.42 Aligned_cols=164 Identities=22% Similarity=0.260 Sum_probs=91.4
Q ss_pred CccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 32 KGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
+++=|.++-..+|.+.+.. +-...+-|..+|++|.|||++|++++++-...|-.+ .
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------k---- 500 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------K---- 500 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------c----
Confidence 3455577766677765541 224567888999999999999999999876665322 0
Q ss_pred CHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCCCCCCCe
Q 001326 101 RLVYLRERVLSEIFEENIKIETPC-LPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDRFGPGSR 166 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gsr 166 (1099)
+ -++++...++ .+. +.+...+.=+--+.+|.||.+|... -+..|+...+.......
T Consensus 501 g-----pEL~sk~vGe-----SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 501 G-----PELFSKYVGE-----SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred C-----HHHHHHhcCc-----hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 0 0111111110 000 1112222222345788888875332 24555555554444434
Q ss_pred EEE---EeCCccccccc---C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCCCh-hHHHHH
Q 001326 167 III---TTRDKWILDNF---G-VHSSNIYEVNGLEYDEARELFCNYAFKENHCPD-DLLALS 220 (1099)
Q Consensus 167 Iii---TTR~~~v~~~~---~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-~~~~~~ 220 (1099)
|+| |-|...+-... | .+. .+.|+..+.+.-.++|+.++-+-..... ++++++
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~--iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDR--IIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccce--eEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 433 33544332211 2 355 7889999999999999999854433332 344443
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.82 E-value=0.0045 Score=69.03 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.-+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67889999999999999999998766555566664
No 213
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.77 E-value=0.018 Score=66.65 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=46.2
Q ss_pred CCccchHHHHHHHHHHhhcccCCCCCCccccchh----hHHHHHHhhcCCC------CCEEEEEEEcCCCCcHHHHHHHH
Q 001326 6 DPGIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSS----RIEKLISLLCVGF------PDFRIVGIWGMAGIGKTTLAGAI 75 (1099)
Q Consensus 6 ~~~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~----~~~~l~~~l~~~~------~~~~vv~I~G~gGiGKTtLA~~v 75 (1099)
|...++++++++.+.++...... ++.+-.++. -.++|.+.+.... ....+|.++|.+|+||||.|..+
T Consensus 38 dV~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakL 115 (437)
T PRK00771 38 DVNVKLVKELSKSIKERALEEEP--PKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKL 115 (437)
T ss_pred CCCHHHHHHHHHHHHHHHhcccc--cccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHH
Confidence 34445777777777766533211 122222222 2345555554321 34689999999999999999999
Q ss_pred HHHHhcc
Q 001326 76 FNLISWE 82 (1099)
Q Consensus 76 ~~~~~~~ 82 (1099)
+..++.+
T Consensus 116 A~~L~~~ 122 (437)
T PRK00771 116 ARYFKKK 122 (437)
T ss_pred HHHHHHc
Confidence 9877654
No 214
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0094 Score=69.51 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=106.3
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRE 107 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 107 (1099)
|...+++||-+.-.+.|...+..+. -..--...|+-|+||||+||-++.-+-..=... . +..+--...+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~---------~-ePC~~C~~Ck 80 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPT---------A-EPCGKCISCK 80 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCC---------C-CcchhhhhhH
Confidence 4556788999999999999986442 234556899999999999999987542210000 0 0011111111
Q ss_pred HHHHH----Hhccc-ccccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 108 RVLSE----IFEEN-IKIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 108 ~ll~~----l~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
.+... +..-+ ......+-.+.|.+.. +++.=+.|+|+|... ..+..|+..+....+....|..|++.+
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 11111 00000 0001111122222222 345567889999755 468888887766566667676666654
Q ss_pred cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 176 ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 176 v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
-...--....+.|..+.++.++-...+...+-......+ .+...-|++...|..
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGSL 214 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCCh
Confidence 322211222337999999999988888777744333222 233444555555543
No 215
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.019 Score=64.19 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.8
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
..++|+++|.+|+||||++.+++..+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 458999999999999999999988765443334444
No 216
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.71 E-value=0.0052 Score=68.55 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=61.3
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC-ceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccc
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF-EGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKI 120 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 120 (1099)
.++...+..-..+ +-++|+|.+|+|||||++.+.+.+..+. +..+++..+.+ ....+..+++.+...+.......
T Consensus 121 ~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 121 MRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred HhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeecCCC
Confidence 3455555432223 3458999999999999999999876654 33334433433 45567778888777655432111
Q ss_pred cCCC---hh---HHHHHH--hcCCeEEEEEeCCCChh
Q 001326 121 ETPC---LP---EYIGER--LRRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 121 ~~~~---~~---~~l~~~--L~~kr~LlVLDdv~~~~ 149 (1099)
.... .. ..+.++ -.+++++||+|++....
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 1111 11 111122 24899999999996443
No 217
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.049 Score=60.59 Aligned_cols=175 Identities=10% Similarity=0.034 Sum_probs=93.9
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHH-------
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEI------- 113 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l------- 113 (1099)
.+++...+..+ .-.....+.|+.|+||+++|+++...+-..-... . ...+.-.-.+.+....
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~--~--------~~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG--D--------QPCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC--C--------CCCCCCHHHHHHhcCCCCCEEEE
Confidence 34555555422 2346777999999999999999998653211000 0 0000000011110000
Q ss_pred hcccccccCCChhHHHHHHh-----cCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCc-ccccccCCCCc
Q 001326 114 FEENIKIETPCLPEYIGERL-----RRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDK-WILDNFGVHSS 185 (1099)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~ 185 (1099)
..........+.++.+.+.+ .+++=++|+|+++... ....|+..+....+++.+|++|.+. .++.... ...
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~-SRC 158 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY-SRC 158 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH-hhc
Confidence 00000000111122222222 2455577899998653 4556666665556677777777654 4443321 112
Q ss_pred ceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHH
Q 001326 186 NIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 186 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 234 (1099)
..+.+.+++++++.+.+...... .. ..+...+..++|.|+..
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~---~~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSA---EI----SEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhcc---Ch----HHHHHHHHHcCCCHHHH
Confidence 37999999999999988776411 11 23556788999999644
No 218
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.69 E-value=0.0037 Score=64.92 Aligned_cols=109 Identities=14% Similarity=0.193 Sum_probs=64.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE-eccccccCCCCHHHHHHHHHHHHhcccc-cccCCChhHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS-NVRVESENGHRLVYLRERVLSEIFEENI-KIETPCLPEYIGERL 133 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~~~~~~~~~~l~~~L 133 (1099)
.+|.|.|..|.||||+++++...+.......++.. +-.+ . .... ...+..... ........+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-----~----~~~~-~~~~i~q~~vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-----F----VHES-KRSLINQREVGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-----c----cccC-ccceeeecccCCCccCHHHHHHHHh
Confidence 47899999999999999999887765444444432 1100 0 0000 000001100 111122567778888
Q ss_pred cCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccc
Q 001326 134 RRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWIL 177 (1099)
Q Consensus 134 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 177 (1099)
+..+=.|++|++.+.+.+....... ..|..++.|+-...+.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 8788899999998887766544332 3455677777655443
No 219
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.66 E-value=0.0056 Score=65.66 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccc----cccCCC-h-----
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENI----KIETPC-L----- 125 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~-~----- 125 (1099)
+-++|.|.+|+||||||+.+++.++.+|+..+++..+.+. ...+..+.+.+...-..... ...+.. .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 5678999999999999999999998888777887766543 33444555554432111100 011111 1
Q ss_pred ---hHHHHHHh---cCCeEEEEEeCCCChh
Q 001326 126 ---PEYIGERL---RRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 126 ---~~~l~~~L---~~kr~LlVLDdv~~~~ 149 (1099)
.-.+.+++ +++.+|+|+||+....
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 11233344 3889999999996543
No 220
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0034 Score=73.40 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=43.0
Q ss_pred ccccchhhHHHHHHhhcC----CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 33 GLVGLSSRIEKLISLLCV----GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+-+|+++-.+++.+.+.. ++-+-++++.+|++|||||.+|+.++..+...|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 378999999999998863 344568999999999999999999999876665
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=96.64 E-value=0.031 Score=62.48 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHHHhhcccCCCCCC--ccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSVSSDFK--GLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAG 73 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~~~~~~--~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~ 73 (1099)
-..+.+++|++.+.+++......... .-+-++.-.+.|.+.+... ....++|+++|++|+||||++.
T Consensus 79 v~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 79 VALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhCCCcchhhhhhhhccCCCeEEEEEcCCCCCHHHHHH
Confidence 34456777777776665332211111 1111222334444444322 1236899999999999999999
Q ss_pred HHHHHHhcc
Q 001326 74 AIFNLISWE 82 (1099)
Q Consensus 74 ~v~~~~~~~ 82 (1099)
+++..+..+
T Consensus 159 kLA~~l~~~ 167 (336)
T PRK14974 159 KLAYYLKKN 167 (336)
T ss_pred HHHHHHHHc
Confidence 998876554
No 222
>PRK07261 topology modulation protein; Provisional
Probab=96.64 E-value=0.0069 Score=61.22 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.62 E-value=0.0024 Score=70.81 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=41.2
Q ss_pred ccccchhhHHHHHHhhcCC----CCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 33 GLVGLSSRIEKLISLLCVG----FPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.++|+++.++++.+++... ....++++++|++|.||||||+++.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999998632 23468999999999999999999998654
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.017 Score=65.38 Aligned_cols=132 Identities=21% Similarity=0.215 Sum_probs=78.1
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER 132 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 132 (1099)
.....|.+.|++|+|||+||..++.. ..|+.+--+. .. +--++..-.+.. .......+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe--~miG~sEsaKc~--------------~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PE--DMIGLSESAKCA--------------HIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hH--HccCccHHHHHH--------------HHHHHHHHh
Confidence 34667789999999999999999874 5677443332 10 111111100000 022333444
Q ss_pred hcCCeEEEEEeCCCChhHH------------HHHhcCCCCC-CCCCe--EEEEeCCcccccccCCCC--cceEecCCCCH
Q 001326 133 LRRMKVLIVLDDVNKVGQL------------KYLAGGIDRF-GPGSR--IIITTRDKWILDNFGVHS--SNIYEVNGLEY 195 (1099)
Q Consensus 133 L~~kr~LlVLDdv~~~~~~------------~~l~~~~~~~-~~gsr--IiiTTR~~~v~~~~~~~~--~~~~~l~~L~~ 195 (1099)
.+..--.||+||++..-+| +.|.-.+... ..|-| |+-||....++..|+... ...|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 5566689999999765443 3332222222 23444 445777888888887522 12799999987
Q ss_pred -HHHHHHHhhh
Q 001326 196 -DEARELFCNY 205 (1099)
Q Consensus 196 -~ea~~Lf~~~ 205 (1099)
++..+.++..
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 7777777654
No 225
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.61 E-value=0.006 Score=77.73 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCccccchhhHHHHHHhhcCC------CCC-EEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 31 FKGLVGLSSRIEKLISLLCVG------FPD-FRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~------~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
...++|.+..++.+...+... .+. ..++.++|+.|+|||++|+++...+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 356999999999998888631 111 3567899999999999999999976443
No 226
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.60 E-value=0.014 Score=70.06 Aligned_cols=50 Identities=30% Similarity=0.518 Sum_probs=39.4
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|...+.++|.+..++.+...+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44456799999999999887643 233456799999999999999998753
No 227
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.59 E-value=0.0048 Score=64.86 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.++|+|..|.||||++..+......+|...+.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4569999999999999999999999996555543
No 228
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.015 Score=64.98 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=58.4
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCC-cccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCC
Q 001326 135 RMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRD-KWILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENH 211 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 211 (1099)
+++=++|+|+++.. +....|+..+....+++.+|++|.+ ..+...... ....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C
Confidence 34457788999854 4566666666655677766655544 555443211 12379999999999999987652 1
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 212 CPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 212 ~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
+ + ...++..++|.|+....+
T Consensus 206 ~-~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A-D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C-h-----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999755443
No 229
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.57 E-value=0.038 Score=62.03 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=94.5
Q ss_pred hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC--c-eeEEEE-eccc-cccCCCCHHHHHHHHHHHHh
Q 001326 40 RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF--E-GRCFVS-NVRV-ESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 40 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~-~~~~~~-~~~~-~~~~~~~~~~l~~~ll~~l~ 114 (1099)
.-+++...+..+ .-...+.+.|+.|+||+|+|.++...+-..- + ..|=.+ ..+. ....++++..+.
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 345666666432 2356788999999999999999988653210 0 000000 0000 000011110000
Q ss_pred cccc-cccCCChhHHHHHHh-----cCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCc-ccccccCCCCc
Q 001326 115 EENI-KIETPCLPEYIGERL-----RRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDK-WILDNFGVHSS 185 (1099)
Q Consensus 115 ~~~~-~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~ 185 (1099)
.+.. .....+.++.+.+.+ .+++=++|+|+++.. +.-..|+..+....+++.+|++|.+. .++..... ..
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS-RC 159 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS-RC 159 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cc
Confidence 0000 000111122222222 245668889999855 34556666555545677777666654 44433211 11
Q ss_pred ceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 001326 186 NIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALT 235 (1099)
Q Consensus 186 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 235 (1099)
..+.+.+++++++.+.+.... + . . .+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~--~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T--M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C--C-C---HHHHHHHHHHcCCCHHHHH
Confidence 268999999999998886542 1 1 1 1336678999999997443
No 230
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.51 E-value=0.025 Score=61.60 Aligned_cols=80 Identities=16% Similarity=0.101 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcC-------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 8 GIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCV-------GFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 8 ~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+.+.+++|++.+.+++..........+ ++.-.+.+.+.+.. ...+.++|+++|++|+||||.+..++..+.
T Consensus 20 ~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 20 GYEVVEKIIEALKKELKGKKVKDAELL--KEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCHHHH--HHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 445667777777665433222111111 22222344444432 123468999999999999999999988775
Q ss_pred ccCceeEEE
Q 001326 81 WEFEGRCFV 89 (1099)
Q Consensus 81 ~~f~~~~~~ 89 (1099)
.+-..+.++
T Consensus 98 ~~g~~V~li 106 (272)
T TIGR00064 98 KQGKSVLLA 106 (272)
T ss_pred hcCCEEEEE
Confidence 543334444
No 231
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.51 E-value=0.01 Score=75.44 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=38.8
Q ss_pred CCccccchhhHHHHHHhhcC------CCC-CEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 31 FKGLVGLSSRIEKLISLLCV------GFP-DFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~------~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+.++|-+..++.+...+.. +.+ ....+.++|+.|+|||+||+++.+.+-.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 35689999999998877751 111 2345678999999999999999987643
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.012 Score=71.32 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=70.0
Q ss_pred CccccchhhHHHHHHhhcC------C-CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHH
Q 001326 32 KGLVGLSSRIEKLISLLCV------G-FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVY 104 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~------~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 104 (1099)
+.++|-+..++.+...+.. + ..........|+.|||||-||++++..+-..=+.-+-+. ..+ .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSE---------y 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSE---------Y 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHH---------H
Confidence 4589999999888887752 1 223567778999999999999999997643222222221 111 1
Q ss_pred HHHHHHHHHhccccc-ccCCChhHHHHHHhcCCeE-EEEEeCCC--ChhHHHHHhcCCC
Q 001326 105 LRERVLSEIFEENIK-IETPCLPEYIGERLRRMKV-LIVLDDVN--KVGQLKYLAGGID 159 (1099)
Q Consensus 105 l~~~ll~~l~~~~~~-~~~~~~~~~l~~~L~~kr~-LlVLDdv~--~~~~~~~l~~~~~ 159 (1099)
.-+--.+.+.+..+. +...+ -..+-+..++++| +|.||+|+ +++-.+-|+..++
T Consensus 561 ~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 222234444444332 22221 3345556677877 77889996 4445555555554
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.49 E-value=0.014 Score=64.74 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=35.8
Q ss_pred cchhhHHHHHHhhcCC--CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 36 GLSSRIEKLISLLCVG--FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 36 Gr~~~~~~l~~~l~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
++...++...+++..- ....+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3333344444444321 123467889999999999999999998765544455553
No 234
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.48 E-value=0.027 Score=60.55 Aligned_cols=176 Identities=19% Similarity=0.123 Sum_probs=91.4
Q ss_pred CCCccccchhhHHHHHHhhcC--CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc-cCCCCHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCV--GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES-ENGHRLVYLR 106 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~ 106 (1099)
.-..++|..++..++-+++.. ..++..-|.|+|+.|.|||+|......+ .+.+.-...+....... .++--+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 445799999999999998862 1233456679999999999998887766 33333333333221111 0111122333
Q ss_pred HHHHHHHhcccccccC-CChhHHHHHHhc------CCeEEEEEeCCCChhH------HHHHhcC-CCCCCCCCeEEEEeC
Q 001326 107 ERVLSEIFEENIKIET-PCLPEYIGERLR------RMKVLIVLDDVNKVGQ------LKYLAGG-IDRFGPGSRIIITTR 172 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~-~~~~~~l~~~L~------~kr~LlVLDdv~~~~~------~~~l~~~-~~~~~~gsrIiiTTR 172 (1099)
+++..++......... .+....+-+.|+ +-++.+|+|++|-..+ +-.+... -....|-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 3333333222111111 112334444443 3479999999874432 1222211 112345667779999
Q ss_pred Ccccc---cccC--CCCcceEecCCCCHHHHHHHHhhhh
Q 001326 173 DKWIL---DNFG--VHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 173 ~~~v~---~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
-...- +... ..+..++-.+.++-++-..+++.-.
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 65321 1111 1111155666666666666665543
No 235
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0011 Score=68.87 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=38.0
Q ss_pred CCCcEEEccCCCCCCcccccccCCCCCceeecCCC--CCc-cCCccccCCCCCcEEEccCCCCCC---CCCCCCCCCCCE
Q 001326 663 EGLKELQLMCCSKLGSLPESLGNLKSLVVLDANRS--AIL-QLPSSIADLNKLRELCLSGCRGFA---LPPLSTLSSLRT 736 (1099)
Q Consensus 663 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~L~~~~~~~---l~~l~~l~~L~~ 736 (1099)
..|+.|++.++..++. ..+..+++|+.|.++.| .+. .++.....+|+|++|++++|++.. ++++..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444443322 12344556666666666 222 333334444666666666665432 333444445555
Q ss_pred EeccCCCC
Q 001326 737 LTLSGCGI 744 (1099)
Q Consensus 737 L~Ls~~~l 744 (1099)
|++.+|..
T Consensus 121 Ldl~n~~~ 128 (260)
T KOG2739|consen 121 LDLFNCSV 128 (260)
T ss_pred hhcccCCc
Confidence 55555443
No 236
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.012 Score=68.91 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=49.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
..-|.|.|..|+|||+||+++++.+... ..+|+.-+.+..-....+..+|+.+ ...+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHH----------------HHHHHHHHh
Confidence 4577899999999999999999987643 3344443333222333345555443 334455566
Q ss_pred CCeEEEEEeCCC
Q 001326 135 RMKVLIVLDDVN 146 (1099)
Q Consensus 135 ~kr~LlVLDdv~ 146 (1099)
..+-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 788999999995
No 237
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.44 E-value=0.0025 Score=60.32 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|+|.|++|+||||+|+++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 238
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.44 E-value=0.027 Score=69.42 Aligned_cols=153 Identities=20% Similarity=0.153 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHhhcCC----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCC
Q 001326 32 KGLVGLSSRIEKLISLLCVG----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHR 101 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 101 (1099)
..+.|.+...+++.+.+... ..-.+-|.++|++|.|||++|+++..+....|- .+. . +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~---~----- 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-G---S----- 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-h---H-----
Confidence 34667776666666554311 011345889999999999999999987654431 111 0 0
Q ss_pred HHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCCCC--C
Q 001326 102 LVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDRFG--P 163 (1099)
Q Consensus 102 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~ 163 (1099)
.+... .... ........+...-...+.+|++|+++... .+..+....+.+. .
T Consensus 220 --~~~~~----~~g~----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 220 --DFVEM----FVGV----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred --HhHHh----hhcc----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 00000 0000 00001222233333567899999986541 1233433333222 3
Q ss_pred CCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 164 GSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 164 gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
+.-+|.||...+.+... ..+. .+.++..+.++-.+++..+..+
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr--~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDR--QVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccce--EEEcCCCCHHHHHHHHHHHhhc
Confidence 44555577665543321 1234 7889999999999999887744
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.007 Score=65.20 Aligned_cols=37 Identities=30% Similarity=0.189 Sum_probs=29.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5567889999999999999999999874434455553
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0036 Score=59.95 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=29.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc-Ccee-EEEEecc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGR-CFVSNVR 93 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~-~~~~~~~ 93 (1099)
.--|+|.||+|+||||+++++.+.++.. |... +|..-++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 3467899999999999999999988766 6544 3333333
No 241
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.43 E-value=0.018 Score=57.51 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
++.|+|.+|+||||+|..+......+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987766555566665
No 242
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.025 Score=63.98 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=39.2
Q ss_pred ccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 33 GLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.++|-+....++..+......-...+.++|++|+||||+|.++.+.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4678888888888888744334456889999999999999999997653
No 243
>PRK04296 thymidine kinase; Provisional
Probab=96.42 E-value=0.005 Score=63.41 Aligned_cols=110 Identities=16% Similarity=-0.000 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccccc--ccCCC-hhHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIK--IETPC-LPEYIGER 132 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~-~~~~l~~~ 132 (1099)
.++.|+|..|.||||+|..+..+...+...++++. -. -+...+... +.+.+...... ..... ....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~~--~d~~~~~~~----i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-PA--IDDRYGEGK----VVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-cc--ccccccCCc----EecCCCCcccceEeCChHHHHHHHHh-
Confidence 47789999999999999999988765544444331 10 001111111 12221110000 11111 2333333
Q ss_pred hcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 133 LRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 133 L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
..++.-+||+|.+.-. +++.++...+ ...|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 2335568999999643 4454444332 246789999999854
No 244
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.38 E-value=0.007 Score=62.21 Aligned_cols=130 Identities=24% Similarity=0.243 Sum_probs=58.8
Q ss_pred cchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH-H-hccCceeEEEEeccccccCCCC--HHHHHHHH--
Q 001326 36 GLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL-I-SWEFEGRCFVSNVRVESENGHR--LVYLRERV-- 109 (1099)
Q Consensus 36 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~~~~--~~~l~~~l-- 109 (1099)
.+..+-+...+.+. +..+|.+.|++|.|||.||.+..-+ + ..+|+..++.-..-+.. +.-+ .-.+.+++
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~-~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAG-EDLGFLPGDLEEKMEP 78 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT-----SS---------T
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc-cccccCCCCHHHHHHH
Confidence 34445555555554 4568999999999999999998753 2 46677666664332211 1111 11111111
Q ss_pred ----HHHHhcccccccCCChhHHHH---------HHhcCC---eEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEe
Q 001326 110 ----LSEIFEENIKIETPCLPEYIG---------ERLRRM---KVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITT 171 (1099)
Q Consensus 110 ----l~~l~~~~~~~~~~~~~~~l~---------~~L~~k---r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT 171 (1099)
+.+.+..-. ........+. ..++++ ..+||+|++.+. +++..+... .+.||+||++-
T Consensus 79 ~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~G 153 (205)
T PF02562_consen 79 YLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITG 153 (205)
T ss_dssp TTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE
T ss_pred HHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEec
Confidence 000111000 0011122221 123443 479999999654 577777655 48899999998
Q ss_pred CCcc
Q 001326 172 RDKW 175 (1099)
Q Consensus 172 R~~~ 175 (1099)
-..+
T Consensus 154 D~~Q 157 (205)
T PF02562_consen 154 DPSQ 157 (205)
T ss_dssp ----
T ss_pred Ccee
Confidence 6553
No 245
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.36 E-value=0.011 Score=73.30 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHhhcCC------C-CCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 32 KGLVGLSSRIEKLISLLCVG------F-PDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..++|-+..++.+.+.+... . .-...+.++|++|+|||++|+++...+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999888887621 1 1245788999999999999999998774
No 246
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.34 E-value=0.014 Score=73.88 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=39.3
Q ss_pred CccccchhhHHHHHHhhcC-------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 32 KGLVGLSSRIEKLISLLCV-------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+.++|.+..++.+.+.+.. ......++.++|+.|+|||.+|+++...+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5689999999988887742 1122457889999999999999999887643
No 247
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.33 E-value=0.026 Score=56.38 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=65.5
Q ss_pred cchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--------------------CceeEEEEecccc
Q 001326 36 GLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE--------------------FEGRCFVSNVRVE 95 (1099)
Q Consensus 36 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~~~~~~~~ 95 (1099)
|-++..+.|.+.+..+ .-...+.++|..|+||+|+|.++.+.+-.. .....|+... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 5566677777777533 234567899999999999999998854221 1122222100 00
Q ss_pred ccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCC
Q 001326 96 SENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRD 173 (1099)
Q Consensus 96 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 173 (1099)
. ....+.++. ++...+... ...+++=++|+||++.. +...+|+..+......+++|++|++
T Consensus 79 ~-~~i~i~~ir-~i~~~~~~~---------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 K-KSIKIDQIR-EIIEFLSLS---------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp S-SSBSHHHHH-HHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred c-chhhHHHHH-HHHHHHHHH---------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0 011222222 222211100 01234567889999854 4455665555444678888888887
Q ss_pred cc
Q 001326 174 KW 175 (1099)
Q Consensus 174 ~~ 175 (1099)
..
T Consensus 142 ~~ 143 (162)
T PF13177_consen 142 PS 143 (162)
T ss_dssp GG
T ss_pred hH
Confidence 65
No 248
>PRK06696 uridine kinase; Validated
Probab=96.28 E-value=0.0073 Score=64.12 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=35.9
Q ss_pred chhhHHHHHHhhcC-CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 37 LSSRIEKLISLLCV-GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 37 r~~~~~~l~~~l~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
|++.+++|.+.+.. ......+|+|.|.+|+||||+|+++.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55566666666643 34568899999999999999999999987544
No 249
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.26 E-value=0.011 Score=60.95 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
+++|.++|+.|+||||.+.+++.+.+.+-..+.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 378999999999999999999887765533344543
No 250
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.26 E-value=0.11 Score=61.26 Aligned_cols=200 Identities=12% Similarity=0.097 Sum_probs=118.3
Q ss_pred CCCCccccchhhHHHHHHhhcC---CCCCEEEEEEEcCCCCcHHHHHHHHHHHHh--------ccCceeEEEEecccccc
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV---GFPDFRIVGIWGMAGIGKTTLAGAIFNLIS--------WEFEGRCFVSNVRVESE 97 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~f~~~~~~~~~~~~~~ 97 (1099)
.+++.+-+|+.+..+|...+.. +...-..+-|.|.+|.|||..+..|.+.++ ..|++ +.+...
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm----- 466 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGL----- 466 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcce-----
Confidence 3788999999999999988862 223345888999999999999999998543 12432 233222
Q ss_pred CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc-----CCeEEEEEeCCCChhH--HHHHhcCCCCC-CCCCeEEE
Q 001326 98 NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR-----RMKVLIVLDDVNKVGQ--LKYLAGGIDRF-GPGSRIII 169 (1099)
Q Consensus 98 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gsrIii 169 (1099)
.-.+..+++..|..++........ ...+.+..+.. .+..++++|+++..-. -+-+-..++|. .++|+++|
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 234477888888888766543321 13455555543 4578999999864422 11111223443 57888776
Q ss_pred EeCC-c----------ccccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCC-CChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 170 TTRD-K----------WILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENH-CPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 170 TTR~-~----------~v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
.+=. . .+...+|.. .+..++-+.++-.++...+.-+-.. .....+-+|++|+.-.|-.-.|+.+.
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~t---Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGLT---RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred EEecccccCHHHHhccchhhhccce---eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 5421 1 112222322 4667777888877777666533221 22334444555655555555555544
Q ss_pred hh
Q 001326 238 GS 239 (1099)
Q Consensus 238 g~ 239 (1099)
-+
T Consensus 622 ~R 623 (767)
T KOG1514|consen 622 RR 623 (767)
T ss_pred HH
Confidence 33
No 251
>PRK07667 uridine kinase; Provisional
Probab=96.22 E-value=0.0088 Score=61.84 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++++...+....+...+|||.|.+|.||||+|+.+.+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455556665555667899999999999999999999977654
No 252
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.22 E-value=0.029 Score=57.96 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=96.4
Q ss_pred CCccccchhhHHH---HHHhhcCC----CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHH
Q 001326 31 FKGLVGLSSRIEK---LISLLCVG----FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLV 103 (1099)
Q Consensus 31 ~~~~vGr~~~~~~---l~~~l~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 103 (1099)
.++.||.+....+ |+++|... .=..+-|..+|++|.|||.+|+++.++.+--| +. + .+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-v--ka------- 184 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-V--KA------- 184 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-e--ch-------
Confidence 4679998876654 55556421 11368899999999999999999999764322 21 0 00
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHH-hcCCeEEEEEeCCCCh--------------hHHHHHhcCCCCC--CCCCe
Q 001326 104 YLRERVLSEIFEENIKIETPCLPEYIGER-LRRMKVLIVLDDVNKV--------------GQLKYLAGGIDRF--GPGSR 166 (1099)
Q Consensus 104 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--------------~~~~~l~~~~~~~--~~gsr 166 (1099)
.+++.+-.+. .. ..+..+-++ -+--++.+.+|.++.. +...+|+..++.. +.|..
T Consensus 185 ---t~liGehVGd----ga-r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 185 ---TELIGEHVGD----GA-RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred ---HHHHHHHhhh----HH-HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 1112111110 00 012222222 2346899999988533 2345566555433 34555
Q ss_pred EEEEeCCccccccc---CCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 167 IIITTRDKWILDNF---GVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 167 IiiTTR~~~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
-|-.|-....+... .... -++..-.+++|-.+++..++-+-.-+-+.. .+.++.+.+|.-
T Consensus 257 tIaaTN~p~~LD~aiRsRFEe--EIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEE--EIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhh--eeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCCC
Confidence 55555555444322 1223 577777899999999998884333222211 344555566543
No 253
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.19 E-value=0.043 Score=56.32 Aligned_cols=54 Identities=28% Similarity=0.282 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHhhc--CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCce
Q 001326 32 KGLVGLSSRIEKLISLLC--VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEG 85 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 85 (1099)
..++|.|...+.+.+--. ...-...-|.+||--|.||++|++++.+.+..+.-.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 358999988887765432 122234566799999999999999999998777654
No 254
>PHA00729 NTP-binding motif containing protein
Probab=96.19 E-value=0.029 Score=58.40 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+...|.|+|.+|+||||||.++.+++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998753
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.17 E-value=0.018 Score=60.98 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..|-+++..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444555444455689999999999999999999987755555677775
No 256
>PRK04132 replication factor C small subunit; Provisional
Probab=96.16 E-value=0.093 Score=65.35 Aligned_cols=154 Identities=17% Similarity=0.134 Sum_probs=89.9
Q ss_pred EEc--CCCCcHHHHHHHHHHHHh-ccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCC
Q 001326 60 IWG--MAGIGKTTLAGAIFNLIS-WEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRM 136 (1099)
Q Consensus 60 I~G--~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 136 (1099)
+.| +.|+||||+|+++++++- ..+...+.-.|. + +..++..+++ ++.+....... -..+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---S-d~rgid~IR~-iIk~~a~~~~~-------------~~~~ 630 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---S-DERGINVIRE-KVKEFARTKPI-------------GGAS 630 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---C-CcccHHHHHH-HHHHHHhcCCc-------------CCCC
Confidence 347 788999999999999862 223222222222 2 2334554443 33322211100 0124
Q ss_pred eEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCC
Q 001326 137 KVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCP 213 (1099)
Q Consensus 137 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 213 (1099)
.-++|||+++... +...|...........++|++|.+.. +..... .....+++++++.++..+.+.+.+-.....-
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5799999998764 56666666554455677776665543 322221 2233899999999998888876653222111
Q ss_pred hhHHHHHHHHHHHhCCCchHH
Q 001326 214 DDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 214 ~~~~~~~~~i~~~~~GlPLal 234 (1099)
-.+....|++.++|.+-.+
T Consensus 710 --~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 --TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred --CHHHHHHHHHHcCCCHHHH
Confidence 1346778999999988543
No 257
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.16 E-value=0.004 Score=60.62 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|.++|.+|+|||+||+++++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 258
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.12 Score=57.80 Aligned_cols=87 Identities=11% Similarity=0.149 Sum_probs=48.2
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcCCCCCCCCCeEEEEeCCcc-cccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCC
Q 001326 135 RMKVLIVLDDVNKV--GQLKYLAGGIDRFGPGSRIIITTRDKW-ILDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENH 211 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 211 (1099)
+.|++ |+|+++.. ..-..+...+....++..+|++|.+.. +.... ......+.+.+++.+++.+.+.... .
T Consensus 113 ~~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti-~SRc~~~~~~~~~~~~~~~~L~~~~----~ 186 (325)
T PRK08699 113 GLRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI-KSRCRKMVLPAPSHEEALAYLRERG----V 186 (325)
T ss_pred CceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH-HHHhhhhcCCCCCHHHHHHHHHhcC----C
Confidence 34454 56888654 333333333332234566777777654 33222 1222378999999999998886542 1
Q ss_pred CChhHHHHHHHHHHHhCCCchH
Q 001326 212 CPDDLLALSKCVLKYANGNPLA 233 (1099)
Q Consensus 212 ~~~~~~~~~~~i~~~~~GlPLa 233 (1099)
..+ . ..+..++|-|+.
T Consensus 187 ~~~-~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 187 AEP-E-----ERLAFHSGAPLF 202 (325)
T ss_pred CcH-H-----HHHHHhCCChhh
Confidence 111 1 113567898964
No 259
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.00093 Score=80.34 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=17.9
Q ss_pred CCCCCEEeccCCC-Ccc--cccccCCCCCCCEEEccCCC
Q 001326 731 LSSLRTLTLSGCG-IIE--ISQDICCLSSLESLNLAENN 766 (1099)
Q Consensus 731 l~~L~~L~Ls~~~-l~~--l~~~~~~l~sL~~L~L~~n~ 766 (1099)
+++|+.|.+.+|. ++. +-.....+++|++|+|++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555554 331 33334445556666665553
No 260
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.00065 Score=81.68 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=18.1
Q ss_pred CCCCcEEEeCCcccccc--cccccccCccccEEeccC
Q 001326 591 LPNLKILNLGFCKRLKR--VSTGICKLKYLRCLYLLD 625 (1099)
Q Consensus 591 l~~L~~L~L~~~~~~~~--l~~~l~~l~~L~~L~L~~ 625 (1099)
+++|+.|.+.+|..... +-.....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45555565555544443 223344555566666655
No 261
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.033 Score=59.38 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=27.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH----hccCceeEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI----SWEFEGRCFV 89 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~f~~~~~~ 89 (1099)
-|+|.++|++|.|||+|.+++++++ ..+|.....+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 5899999999999999999999964 3445444444
No 262
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.044 Score=65.89 Aligned_cols=155 Identities=20% Similarity=0.182 Sum_probs=88.1
Q ss_pred CccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 32 KGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++.....|-....-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4566666666666555431 123466888999999999999999999765554322110
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCCCCCCC--
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDRFGPGS-- 165 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs-- 165 (1099)
. +++...++ .............+..+..|.+|+++... ....++.........+
T Consensus 311 ---~----l~sk~vGe----sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 ---E----LLSKWVGE----SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred ---H----Hhccccch----HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 0 11110000 00002333344445788999999985321 2333444433223333
Q ss_pred eEEEEeCCcccccc-c----CCCCcceEecCCCCHHHHHHHHhhhhcCCC
Q 001326 166 RIIITTRDKWILDN-F----GVHSSNIYEVNGLEYDEARELFCNYAFKEN 210 (1099)
Q Consensus 166 rIiiTTR~~~v~~~-~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 210 (1099)
.||-||-....... + ..+. .+.++..+.++..+.|..+.-+..
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~--~i~v~~pd~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDR--LIYVPLPDLEERLEIFKIHLRDKK 427 (494)
T ss_pred EEEecCCCccccCHhhcccCccce--EeecCCCCHHHHHHHHHHHhcccC
Confidence 34444443333221 1 2344 899999999999999999885433
No 263
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00032 Score=72.47 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCCceeecCCCCCccCCccccCCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccc--cCCCCCCCEEEccC
Q 001326 687 KSLVVLDANRSAILQLPSSIADLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQD--ICCLSSLESLNLAE 764 (1099)
Q Consensus 687 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~--~~~l~sL~~L~L~~ 764 (1099)
.+.+.|++.+|.+..+. ....++.|+.|.|+-|++.++.++..++.|++|+|..|.|.++.+- +.++|+|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 34444555555554431 2345667777777777777777777777777777777777655443 55666666666666
Q ss_pred CC
Q 001326 765 NN 766 (1099)
Q Consensus 765 n~ 766 (1099)
|.
T Consensus 98 NP 99 (388)
T KOG2123|consen 98 NP 99 (388)
T ss_pred CC
Confidence 54
No 264
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.04 E-value=0.095 Score=60.61 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=43.5
Q ss_pred CccchHHHHHHHHHHhhcccC-C-CCCCccccchhhHHHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSV-S-SDFKGLVGLSSRIEKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~-~-~~~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
...+.++++++.+.++..... + ...+.-.=...-.++|.+++... .....++.++|.+|+||||.|..++.
T Consensus 42 V~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l~~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 42 VNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAILGGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHhCCCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 344577777777766653221 1 11111001122234455655432 12367999999999999999999988
Q ss_pred HHh
Q 001326 78 LIS 80 (1099)
Q Consensus 78 ~~~ 80 (1099)
.+.
T Consensus 122 ~l~ 124 (428)
T TIGR00959 122 YLK 124 (428)
T ss_pred HHH
Confidence 754
No 265
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.00 E-value=0.017 Score=61.40 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=36.0
Q ss_pred HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 44 LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 44 l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
|-++|..+-..-.++.|+|.+|+|||++|.+++.........++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44455444455679999999999999999999887655556778886
No 266
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.066 Score=61.06 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.8
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999988654
No 267
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.15 Score=52.24 Aligned_cols=147 Identities=20% Similarity=0.294 Sum_probs=85.3
Q ss_pred cccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCH
Q 001326 34 LVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRL 102 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 102 (1099)
+=|.+..++++.+.+... -...+-|.++|++|.|||-||++|++.. .||+..+. +.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvs-------gs 215 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVS-------GS 215 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEec-------hH
Confidence 345588888888877632 2356778899999999999999999853 24443221 22
Q ss_pred HHHHHHHHHHHhcccccccCCChhHHHHHHh----cCCeEEEEEeCCCChh--------------H--HHHHhcCCCCC-
Q 001326 103 VYLRERVLSEIFEENIKIETPCLPEYIGERL----RRMKVLIVLDDVNKVG--------------Q--LKYLAGGIDRF- 161 (1099)
Q Consensus 103 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~~- 161 (1099)
.-+|+-+ .+ +..++++.. ..-+..|..|.++... | .-+++..++.+
T Consensus 216 elvqk~i-ge------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 ELVQKYI-GE------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHHh-hh------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 2222221 11 122222211 2456788888885431 1 22233344333
Q ss_pred -CCCCeEEEEeCCccccccc-----CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 162 -GPGSRIIITTRDKWILDNF-----GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 162 -~~gsrIiiTTR~~~v~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
.+.-+||.+|..-.++... .++. .++.++.+++.-.++++-+..+
T Consensus 283 atknikvimatnridild~allrpgridr--kiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDR--KIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccc--cccCCCCCHHHHHHHHHHhhhh
Confidence 2456778777554443321 2344 6888888888888888776643
No 268
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.98 E-value=0.016 Score=58.78 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLR 106 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 106 (1099)
|..-.++||-++.++++.-... +.+..-+.|.||+|+||||-+..+++++-. .+...+.-.| .| +..++..+.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN---AS-deRGIDvVR 96 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN---AS-DERGIDVVR 96 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc---Cc-cccccHHHH
Confidence 4455689999999998876654 456777789999999999999999886533 2222221111 12 455555444
Q ss_pred HHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh
Q 001326 107 ERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 107 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 149 (1099)
.++-.-...+ ... -.++.-.||||..|+..
T Consensus 97 n~IK~FAQ~k-v~l------------p~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 97 NKIKMFAQKK-VTL------------PPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHHHHHhh-ccC------------CCCceeEEEeeccchhh
Confidence 4432211100 000 12456688999998764
No 269
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.93 E-value=0.077 Score=64.38 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=40.5
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..+.++|....++++.+.+..-...-..|.|+|..|+|||++|+++++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888876433334566799999999999999999853
No 270
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.02 Score=69.67 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+..+||+.+++++.+.|.....+-. .++|.+|+|||++|.-+++++..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhc
Confidence 5699999999999999974433333 36899999999999999997643
No 271
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.89 E-value=0.033 Score=59.64 Aligned_cols=49 Identities=22% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..|-++|..+-+.-.++.|+|.+|+|||++|.++......+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3444555545556789999999999999999999665433445667775
No 272
>PRK10867 signal recognition particle protein; Provisional
Probab=95.88 E-value=0.1 Score=60.41 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=44.1
Q ss_pred CccchHHHHHHHHHHhhcccCC-C-CCCccccchhhHHHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSVS-S-DFKGLVGLSSRIEKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~~-~-~~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
...+.++++++.|.++...... . ..+.=.=+..-.++|.+.+..+ .....+|.++|.+|+||||.|..++.
T Consensus 43 V~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 43 VNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILGGENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhCCCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3445777777777766432111 0 0000000111223566666421 12368999999999999999999887
Q ss_pred HHhcc
Q 001326 78 LISWE 82 (1099)
Q Consensus 78 ~~~~~ 82 (1099)
.+..+
T Consensus 123 ~l~~~ 127 (433)
T PRK10867 123 YLKKK 127 (433)
T ss_pred HHHHh
Confidence 66554
No 273
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.88 E-value=0.026 Score=61.33 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=59.9
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccc
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKI 120 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 120 (1099)
++.+.+++. ....+|.|.|..|.||||+++++.+.+...-...+.+.+..+.. ..+.. ++ .-...
T Consensus 69 ~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~--~~~~~--------q~--~v~~~ 133 (264)
T cd01129 69 LEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ--IPGIN--------QV--QVNEK 133 (264)
T ss_pred HHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec--CCCce--------EE--EeCCc
Confidence 344555553 23358999999999999999999887644222344444322211 01110 00 00011
Q ss_pred cCCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHh
Q 001326 121 ETPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLA 155 (1099)
Q Consensus 121 ~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~ 155 (1099)
......+.++..|+..+=.|+++++.+.+....+.
T Consensus 134 ~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 134 AGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 11226778888889899999999999988655443
No 274
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.85 E-value=0.022 Score=67.11 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=50.5
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER 132 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 132 (1099)
+.-+|..++|++|+||||||+.++.+.. | .+--.| .| +......+.+.|...+........
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Y--sVvEIN---AS-DeRt~~~v~~kI~~avq~~s~l~a----------- 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--Y--SVVEIN---AS-DERTAPMVKEKIENAVQNHSVLDA----------- 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--c--eEEEec---cc-ccccHHHHHHHHHHHHhhcccccc-----------
Confidence 4578999999999999999999998642 1 111111 23 556666666666665543321111
Q ss_pred hcCCeEEEEEeCCCCh
Q 001326 133 LRRMKVLIVLDDVNKV 148 (1099)
Q Consensus 133 L~~kr~LlVLDdv~~~ 148 (1099)
.+++.-+|+|.+|..
T Consensus 385 -dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDGA 399 (877)
T ss_pred -CCCcceEEEecccCC
Confidence 257889999999754
No 275
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.13 Score=58.66 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..+++++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 276
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.83 E-value=0.037 Score=63.00 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.++-+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444555433344579999999999999999999987765545667775
No 277
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.82 E-value=0.07 Score=60.04 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=34.9
Q ss_pred cccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 34 LVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
+||....++++.+.+..-...-.-|.|+|..|+||+++|+++++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888777776543333456779999999999999999874
No 278
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.77 E-value=0.11 Score=59.68 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=38.4
Q ss_pred CccccchhhHHHHHHhhc-----CCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 32 KGLVGLSSRIEKLISLLC-----VGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.+---.+.++++..||. ...-+.+|+.|+|++|+||||.++.+....
T Consensus 82 eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 82 EELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345555667788999987 445567899999999999999999998754
No 279
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.75 E-value=0.026 Score=59.35 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=34.8
Q ss_pred hhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 47 LLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 47 ~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
+|..+-+.-+++.|+|.+|+|||++|.++......+...++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444455689999999999999999999887666667788886
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.73 E-value=0.15 Score=58.74 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=43.9
Q ss_pred CccchHHHHHHHHHHhhcccCC--CCCCccccchhhHHHHHHhhcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSVS--SDFKGLVGLSSRIEKLISLLCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~~--~~~~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
...+.++++++.+.++...... ...+.-.=+..-.++|.+++... .....+|.++|..|+||||.|.+++.
T Consensus 43 V~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 43 VNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445677777777666422111 11110011122234455555421 12368999999999999999999987
Q ss_pred HHhcc
Q 001326 78 LISWE 82 (1099)
Q Consensus 78 ~~~~~ 82 (1099)
.++.+
T Consensus 123 ~l~~~ 127 (429)
T TIGR01425 123 YYQRK 127 (429)
T ss_pred HHHHC
Confidence 66544
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.73 E-value=0.011 Score=69.05 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=41.7
Q ss_pred CccccchhhHHHHHHhhc----CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 32 KGLVGLSSRIEKLISLLC----VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
++++|+++.++++.+.|. .-....+++.++|++|+||||||+.+.+-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 468999999999999883 22345689999999999999999999986543
No 282
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.71 E-value=0.021 Score=64.76 Aligned_cols=109 Identities=13% Similarity=0.244 Sum_probs=64.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcc-cccccCCChhHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEE-NIKIETPCLPEYIGERL 133 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~l~~~L 133 (1099)
...|.|.|+.|.||||+++++.+.+......+++.. . +. ....... ...+... ..........+.++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti--E----dp--~E~~~~~-~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI--E----DP--IEYVHRN-KRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE--c----CC--hhhhccC-ccceEEccccCCCCcCHHHHHHHhh
Confidence 468999999999999999999987765544444432 0 10 1100000 0000000 01111122677788889
Q ss_pred cCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 134 RRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 134 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
+..+=.|++|++.+.+.+....... ..|..|+.|.-...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 9999999999999888766533321 34555555554433
No 283
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.69 E-value=0.16 Score=59.06 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=27.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh--ccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS--WEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 90 (1099)
.++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 36899999999999999999987664 3333455553
No 284
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.69 E-value=0.029 Score=62.50 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=44.7
Q ss_pred CccchHHHHHHHHHHhhcccCCCCCCccccchhhHHHHHHhhcC-------CCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 7 PGIKPIRMGFQEYQRLKEKSVSSDFKGLVGLSSRIEKLISLLCV-------GFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 7 ~~~~~i~~i~~~v~~~l~~~~~~~~~~~vGr~~~~~~l~~~l~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
-..+..++|++.+.++.........+.+ ++.-.+.|.+.+.. ......+++++|++|+||||++..++..+
T Consensus 61 v~~~~a~~i~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 61 VGVETTEEIIEELRERVKRKNLKDPEEL--KELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCHHHH--HHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3445677777777666532211111111 12223345555531 11346899999999999999999999877
Q ss_pred hcc
Q 001326 80 SWE 82 (1099)
Q Consensus 80 ~~~ 82 (1099)
+.+
T Consensus 139 ~~~ 141 (318)
T PRK10416 139 KAQ 141 (318)
T ss_pred Hhc
Confidence 654
No 285
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.67 E-value=0.34 Score=50.95 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=113.6
Q ss_pred CCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc------cCceeEEEEeccc------cc--
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW------EFEGRCFVSNVRV------ES-- 96 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------~~-- 96 (1099)
-+.+.++++...++.++.. ..+..-..++|+.|.||-|.+..+.+++-+ +-+.+.|...... .+
T Consensus 12 l~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3457777777777777764 356777889999999999999988775422 2233344432211 00
Q ss_pred ------c--CCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeE-EEEEeCCCChh--HHHHHhcCCCCCCCCC
Q 001326 97 ------E--NGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKV-LIVLDDVNKVG--QLKYLAGGIDRFGPGS 165 (1099)
Q Consensus 97 ------~--~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~--~~~~l~~~~~~~~~gs 165 (1099)
+ ....-..+.++++.++.....-... ..+.| ++|+-.+++.. .-.+|..........+
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~~-----------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ-----------GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhhc-----------cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0 1111123444444444322111100 11222 55666665432 2222332222224456
Q ss_pred eEEEEeCCccc-ccccCCCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCch-HHHHHhhh-cC
Q 001326 166 RIIITTRDKWI-LDNFGVHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPL-ALTVLGSF-FH 242 (1099)
Q Consensus 166 rIiiTTR~~~v-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~lg~~-L~ 242 (1099)
|+|+..-..+- ..... .....+++.+.+++|....++..+-+....-+ .+++.+|+++++|+-- |+-++-.. +.
T Consensus 159 RlIl~cns~SriIepIr-SRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIR-SRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHh-hheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 77754332211 11110 11126899999999999999888754443333 5889999999999753 33332111 11
Q ss_pred C---------CCHHHHHHHHHHHh
Q 001326 243 Q---------KSKPDWEKALEKIN 257 (1099)
Q Consensus 243 ~---------~~~~~w~~~l~~l~ 257 (1099)
+ -...+|+-++.++.
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHH
Confidence 1 13568998887654
No 286
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.65 E-value=0.025 Score=55.42 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=54.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERL 133 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L 133 (1099)
-.+++|.|..|.|||||++.+...... ..+.+++....... --+. .+... ..-.+.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~-~~~~------------------lS~G~~~rv~laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIG-YFEQ------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEE-EEcc------------------CCHHHHHHHHHHHHH
Confidence 368899999999999999999875432 23444443110000 0000 11111 122344555
Q ss_pred cCCeEEEEEeCCC---ChhHHHHHhcCCCCCCCCCeEEEEeCCccccc
Q 001326 134 RRMKVLIVLDDVN---KVGQLKYLAGGIDRFGPGSRIIITTRDKWILD 178 (1099)
Q Consensus 134 ~~kr~LlVLDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~ 178 (1099)
..++-++++|+.. +....+.+...+... +..||++|.+...+.
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 6677789999873 222222222222111 246888887765543
No 287
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.071 Score=61.71 Aligned_cols=128 Identities=21% Similarity=0.204 Sum_probs=77.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHh-
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERL- 133 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L- 133 (1099)
..-|.+||++|.|||-||++|+|+-.-.| +. + .+. .+......+- +.....+.++-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-V-------KGP-ELlNkYVGES---------ErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-V-------KGP-ELLNKYVGES---------ERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-e-------cCH-HHHHHHhhhH---------HHHHHHHHHHhh
Confidence 45678999999999999999999876665 32 1 111 1111111110 01222333333
Q ss_pred cCCeEEEEEeCCCChh-------------HHHHHhcCCCCC--CCCCeEEEEeCCccccc-cc----CCCCcceEecCCC
Q 001326 134 RRMKVLIVLDDVNKVG-------------QLKYLAGGIDRF--GPGSRIIITTRDKWILD-NF----GVHSSNIYEVNGL 193 (1099)
Q Consensus 134 ~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~-~~----~~~~~~~~~l~~L 193 (1099)
..-+++|.+|.+|..- -..+|+..++.. ..|.-||-.|-...+.. .+ ..+. ...|+..
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk--~LyV~lP 679 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDK--LLYVGLP 679 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCc--eeeecCC
Confidence 3578999999996431 245566555433 24556665554333322 11 2355 7889999
Q ss_pred CHHHHHHHHhhhhc
Q 001326 194 EYDEARELFCNYAF 207 (1099)
Q Consensus 194 ~~~ea~~Lf~~~a~ 207 (1099)
+.+|-.++++..+-
T Consensus 680 n~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 680 NAEERVAILKTITK 693 (802)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988874
No 288
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.61 E-value=0.019 Score=56.18 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.+|-|.|.+|.||||||+++..++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58889999999999999999999887766566654
No 289
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.59 E-value=0.037 Score=58.86 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=30.2
Q ss_pred HhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 46 SLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 46 ~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
+.+..+-+.-.++.|.|.+|.||||+|.++......+-..++|+.
T Consensus 15 ~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 15 KRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred hhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 334333344569999999999999998776664433334566765
No 290
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.16 Score=52.53 Aligned_cols=52 Identities=33% Similarity=0.474 Sum_probs=37.3
Q ss_pred cccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 34 LVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.=|-.+.++++.+.... +-+-.+-|.++|++|.|||-+|++|+|+.. .||+-
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfir 241 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIR 241 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEe
Confidence 44556667777665531 223467788999999999999999999753 46664
No 291
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.58 E-value=0.015 Score=59.25 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=31.1
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
...+|.+.|+.|.||||+|+++++++..++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 346899999999999999999999988777777666
No 292
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.57 E-value=0.01 Score=56.72 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|+|.|++|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 293
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.57 E-value=0.032 Score=62.74 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+.++|....++++.+.+..-...-.-|.|+|..|+||+++|++++..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 456999999999988887643334456779999999999999999864
No 294
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.56 E-value=0.073 Score=56.68 Aligned_cols=48 Identities=29% Similarity=0.285 Sum_probs=34.7
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC------ceeEEEE
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF------EGRCFVS 90 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 90 (1099)
.|-++|..+-+.-.++.|+|.+|+|||++|..+........ ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34444544445567999999999999999999987654444 4567775
No 295
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.00065 Score=70.33 Aligned_cols=87 Identities=25% Similarity=0.285 Sum_probs=72.8
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCCCEEeccCCCCcccccccCCCCCCCEEEccCCCCccccc--cccCCCCCCEEee
Q 001326 708 DLNKLRELCLSGCRGFALPPLSTLSSLRTLTLSGCGIIEISQDICCLSSLESLNLAENNFESLPS--SISQLSCLRRLCL 785 (1099)
Q Consensus 708 ~l~~L~~L~L~~~~~~~l~~l~~l~~L~~L~Ls~~~l~~l~~~~~~l~sL~~L~L~~n~l~~lp~--~l~~l~~L~~L~L 785 (1099)
.+.+.+.|++.||.+..+.-...++.|+.|.|+-|.|+.+. .+..|++|++|.|..|.|.++.+ -+.++|+|+.|.|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 35678899999999888887888999999999999998764 36678999999999999987764 4788999999999
Q ss_pred cCCCCCCCCC
Q 001326 786 RNCNMLQSLP 795 (1099)
Q Consensus 786 ~~c~~l~~lp 795 (1099)
..|+--..-+
T Consensus 96 ~ENPCc~~ag 105 (388)
T KOG2123|consen 96 DENPCCGEAG 105 (388)
T ss_pred ccCCcccccc
Confidence 9987665544
No 296
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.47 E-value=0.036 Score=55.62 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=44.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcC-
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRR- 135 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~- 135 (1099)
++.|.|.+|.|||++|.++... .....+|+... ...+. .+++.+..............+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~-----~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATA-----EAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc-----CcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 3679999999999999999765 22456676422 22333 35555544332222222222223344444421
Q ss_pred -CeEEEEEeCC
Q 001326 136 -MKVLIVLDDV 145 (1099)
Q Consensus 136 -kr~LlVLDdv 145 (1099)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2347999987
No 297
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.45 E-value=0.06 Score=67.41 Aligned_cols=50 Identities=28% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
....++|....++++.+.+..-...-.-|.|+|..|+|||++|+++++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999988877665333334567799999999999999999854
No 298
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.12 Score=58.33 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFV 89 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~ 89 (1099)
-++++++|+.|+||||++.++..+...++ ..+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 57999999999999999999998764443 234444
No 299
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.39 E-value=0.014 Score=60.50 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
||||.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999987644
No 300
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.062 Score=57.18 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 32 KGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+.+-|--..+.++.+.+... -.-+..++|||++|.|||-+|++|+..+.-.|
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 34555555555665555311 12367899999999999999999999876554
No 301
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.085 Score=58.65 Aligned_cols=97 Identities=24% Similarity=0.239 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccc
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKI 120 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 120 (1099)
+.++-..|..+-=.-.+|.|-|-+|||||||..++..++..+- .+.|+. .+.+..++.-+. ..+.......
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs-------GEES~~QiklRA-~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS-------GEESLQQIKLRA-DRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe-------CCcCHHHHHHHH-HHhCCCccce
Confidence 3455555543222346899999999999999999999988776 677875 334444433222 2222111111
Q ss_pred ---cCCChhHHHHHHhcCCeEEEEEeCCC
Q 001326 121 ---ETPCLPEYIGERLRRMKVLIVLDDVN 146 (1099)
Q Consensus 121 ---~~~~~~~~l~~~L~~kr~LlVLDdv~ 146 (1099)
...+..+++...-..++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 11113334444444678899999884
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.34 E-value=0.045 Score=57.93 Aligned_cols=125 Identities=17% Similarity=0.124 Sum_probs=69.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccc-------ccccCCC-h
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEEN-------IKIETPC-L 125 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-------~~~~~~~-~ 125 (1099)
+-.++||+|..|.||||+|+.+..-..... +.+++..-....-..........+++..+.... ...+..+ .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 346999999999999999999998665433 344443110000001112222333444432211 1122222 3
Q ss_pred hHHHHHHhcCCeEEEEEeCCCCh------hHHHHHhcCCCCCCCCCeEEEEeCCccccccc
Q 001326 126 PEYIGERLRRMKVLIVLDDVNKV------GQLKYLAGGIDRFGPGSRIIITTRDKWILDNF 180 (1099)
Q Consensus 126 ~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 180 (1099)
.-.+.+.|.-++-+||.|+.-.. .|.-.+...+. ...|-..+..|-|-.++..+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 34566778889999999986322 23333333322 13466788888888777665
No 303
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.31 E-value=0.032 Score=64.42 Aligned_cols=46 Identities=26% Similarity=0.178 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..++||++.++.+...+..+. -|.|+|++|+|||++|+++......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 469999999999888886443 5679999999999999999986543
No 304
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.30 E-value=0.053 Score=55.41 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=61.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHH------HHHHHhccc---cc---ccC
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRER------VLSEIFEEN---IK---IET 122 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~------ll~~l~~~~---~~---~~~ 122 (1099)
-.+++|.|..|.|||||++.++..... ..+.+++.... . ........... ++..+.-.. .. .+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~-~--~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKD-L--ASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE-C--CcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 358999999999999999999886532 34555553211 1 11111111111 222221111 01 111
Q ss_pred CC-hhHHHHHHhcCCeEEEEEeCCC---ChhHHHHHhcCCCCC-CC-CCeEEEEeCCcccc
Q 001326 123 PC-LPEYIGERLRRMKVLIVLDDVN---KVGQLKYLAGGIDRF-GP-GSRIIITTRDKWIL 177 (1099)
Q Consensus 123 ~~-~~~~l~~~L~~kr~LlVLDdv~---~~~~~~~l~~~~~~~-~~-gsrIiiTTR~~~v~ 177 (1099)
.. ..-.+.+.+...+-++++|+.. +....+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 2233455566788899999873 222222222222111 22 67888888876654
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.26 Score=55.30 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
..++++++|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999886644433445553
No 306
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.29 E-value=0.012 Score=54.89 Aligned_cols=28 Identities=39% Similarity=0.558 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccCce
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLISWEFEG 85 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~~~f~~ 85 (1099)
|.|+|.+|+||||+|++++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988887764
No 307
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.28 E-value=0.045 Score=55.09 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=57.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEecc---ccccCCCCH--HHHHHHHHHHHhcccccccCCC-hhHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVR---VESENGHRL--VYLRERVLSEIFEENIKIETPC-LPEY 128 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~---~~~~~~~~~--~~l~~~ll~~l~~~~~~~~~~~-~~~~ 128 (1099)
-.+++|.|..|.|||||++.+....... .+.+++...+ -.. +...+ ..+.+.+... .....+... ..-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~-q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLP-QRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEEC-CCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 3588999999999999999998754321 2222221100 001 11111 1222222110 111111112 2334
Q ss_pred HHHHhcCCeEEEEEeCCC---ChhHHHHHhcCCCCCCCCCeEEEEeCCcccc
Q 001326 129 IGERLRRMKVLIVLDDVN---KVGQLKYLAGGIDRFGPGSRIIITTRDKWIL 177 (1099)
Q Consensus 129 l~~~L~~kr~LlVLDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 177 (1099)
+.+.+..++=++++|+.. |....+.+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 455566778888999863 222222222211111 35788888877654
No 308
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.27 E-value=0.015 Score=63.90 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=71.1
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLS 111 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 111 (1099)
+.+.-.....+++.++|...-...+.|.|.|..|.||||+++++...+...-...+-+.+..+.. + .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~-----l--------~ 170 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR-----L--------P 170 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---------------S
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee-----e--------c
Confidence 34444444445566665432234578899999999999999999987766523334444322221 1 0
Q ss_pred HHhccccc--ccCCChhHHHHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeE-EEEeC
Q 001326 112 EIFEENIK--IETPCLPEYIGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRI-IITTR 172 (1099)
Q Consensus 112 ~l~~~~~~--~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrI-iiTTR 172 (1099)
........ .......+.++..|+..+=.||++++.+.+..+.+... ..|..+ +-|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 171 GPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp CSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred ccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 00000000 11222778888899999999999999988887774433 456677 44444
No 309
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.24 E-value=0.058 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|.|.|++|+||||+|+.+.+++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999876
No 310
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.20 E-value=0.12 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
++.++|++|+||||+++.+...+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 311
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.20 E-value=0.027 Score=56.46 Aligned_cols=115 Identities=19% Similarity=0.139 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLR 134 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~ 134 (1099)
.+++|.|..|.|||||.+.++..... ..+.+++.... . .........+. .+ .-....+... ..-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~-~--~~~~~~~~~~~---~i-~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKE-V--SFASPRDARRA---GI-AMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEE-C--CcCCHHHHHhc---Ce-EEEEecCHHHHHHHHHHHHHh
Confidence 58999999999999999999875432 34555554211 0 11111110000 00 0000011111 2333445566
Q ss_pred CCeEEEEEeCCC---ChhHHHHHhcCCCC-CCCCCeEEEEeCCccccc
Q 001326 135 RMKVLIVLDDVN---KVGQLKYLAGGIDR-FGPGSRIIITTRDKWILD 178 (1099)
Q Consensus 135 ~kr~LlVLDdv~---~~~~~~~l~~~~~~-~~~gsrIiiTTR~~~v~~ 178 (1099)
.++-++++|+.. |....+.+...+.. ...|..||++|.+...+.
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 778888999874 22222222222211 134678888888876433
No 312
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.45 Score=49.23 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=97.0
Q ss_pred cCCCCCCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccc
Q 001326 26 SVSSDFKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRV 94 (1099)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 94 (1099)
.|.....++=|.++.++++.+.+-.. -...+-|.+||++|.|||-+|++.+.+....|-.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK--------- 235 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK--------- 235 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH---------
Confidence 34445567889999999988876421 1235678899999999999999998875544321
Q ss_pred cccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHh----cCCeEEEEEeCCCChh--------------H--HHHH
Q 001326 95 ESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERL----RRMKVLIVLDDVNKVG--------------Q--LKYL 154 (1099)
Q Consensus 95 ~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--~~~l 154 (1099)
-.+. ++.+ ...+. +...+++.. ...+..|.+|.++... | .-+|
T Consensus 236 ----LAgP-QLVQ----MfIGd--------GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLEL 298 (424)
T KOG0652|consen 236 ----LAGP-QLVQ----MFIGD--------GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 298 (424)
T ss_pred ----hcch-HHHh----hhhcc--------hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHH
Confidence 0111 1111 11111 122222221 2457888889874221 1 2234
Q ss_pred hcCCCCCCC--CCeEEEEeCCccccc-----ccCCCCcceEecCCCCHHHHHHHHhhhhcCCC-CCChhHHHHHHHH
Q 001326 155 AGGIDRFGP--GSRIIITTRDKWILD-----NFGVHSSNIYEVNGLEYDEARELFCNYAFKEN-HCPDDLLALSKCV 223 (1099)
Q Consensus 155 ~~~~~~~~~--gsrIiiTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i 223 (1099)
+..++.+.+ ..+||..|..-.++. .-..+. .++.+..+++.-.+++.-++.+-+ .+.-.++++++.-
T Consensus 299 LNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR--KIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 299 LNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR--KIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred HHhhcCCCCccceEEEeecccccccCHHHhhcccccc--cccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 444544444 356776665444432 222344 677777777777778877775533 3344677777653
No 313
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.22 Score=56.35 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=92.7
Q ss_pred ccccchhhHH-HHHHhhcC---C--------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 33 GLVGLSSRIE-KLISLLCV---G--------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 33 ~~vGr~~~~~-~l~~~l~~---~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
+-+.+|..++ +|++-|.. + ..-.|--.++|++|.|||++..|+++.+. .-+|.-...++. ...
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~-~n~ 275 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVK-LDS 275 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeecccc-CcH
Confidence 4566776665 35555541 1 12246667999999999999999999653 334544332222 111
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChhH--------------------HHHHhcCCC-
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVGQ--------------------LKYLAGGID- 159 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--------------------~~~l~~~~~- 159 (1099)
. ++.++.. ...|-+||+.|+|..-+ +.-|+..++
T Consensus 276 ---d-Lr~LL~~---------------------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG 330 (457)
T KOG0743|consen 276 ---D-LRHLLLA---------------------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG 330 (457)
T ss_pred ---H-HHHHHHh---------------------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcc
Confidence 1 2222221 13456777888753311 111222221
Q ss_pred -CCCC-CCeEE-EEeCCcccccc----cC-CCCcceEecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCc
Q 001326 160 -RFGP-GSRII-ITTRDKWILDN----FG-VHSSNIYEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 160 -~~~~-gsrIi-iTTR~~~v~~~----~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 231 (1099)
|... +-||| .||-..+-+.. .| .+- .+.+.-=+.+.-..||..+..... +++ +..+|.+...|.-
T Consensus 331 lwSscg~ERIivFTTNh~EkLDPALlRpGRmDm--hI~mgyCtf~~fK~La~nYL~~~~-~h~----L~~eie~l~~~~~ 403 (457)
T KOG0743|consen 331 LWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM--HIYMGYCTFEAFKTLASNYLGIEE-DHR----LFDEIERLIEETE 403 (457)
T ss_pred ccccCCCceEEEEecCChhhcCHhhcCCCccee--EEEcCCCCHHHHHHHHHHhcCCCC-Ccc----hhHHHHHHhhcCc
Confidence 2222 33554 67766654332 12 233 578888899999999998875433 333 3444444444544
Q ss_pred hHHH-HHhhhcCCC
Q 001326 232 LALT-VLGSFFHQK 244 (1099)
Q Consensus 232 Lal~-~lg~~L~~~ 244 (1099)
+.=. +.+.++..+
T Consensus 404 ~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 404 VTPAQVAEELMKNK 417 (457)
T ss_pred cCHHHHHHHHhhcc
Confidence 3333 333444444
No 314
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.028 Score=57.80 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=27.2
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..+.+|||.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988755
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.10 E-value=0.041 Score=55.74 Aligned_cols=104 Identities=18% Similarity=0.142 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEec--cccccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNV--RVESENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGER 132 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 132 (1099)
.+++|.|..|.|||||++.+...... ..+.+++... .-.. +... .+... ..-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~-q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKP-QYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEc-ccCC------------------CCHHHHHHHHHHHH
Confidence 58999999999999999999875432 2333433211 0001 1111 11111 22334455
Q ss_pred hcCCeEEEEEeCCC---ChhHHHHHhcCCCC-CCC-CCeEEEEeCCcccccc
Q 001326 133 LRRMKVLIVLDDVN---KVGQLKYLAGGIDR-FGP-GSRIIITTRDKWILDN 179 (1099)
Q Consensus 133 L~~kr~LlVLDdv~---~~~~~~~l~~~~~~-~~~-gsrIiiTTR~~~v~~~ 179 (1099)
+..++-++++|+.. +....+.+...+.. ... +..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 66677899999873 22222222211111 122 3568888877655443
No 316
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.09 E-value=0.081 Score=62.10 Aligned_cols=50 Identities=26% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
+.++-+.|..+-..-.++.|.|.+|+|||||+.++......+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45555566544445578899999999999999999876655434567775
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.05 E-value=0.097 Score=61.42 Aligned_cols=50 Identities=30% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
+.++-+.|..+-..-.++.|.|.+|+|||||+.++......+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555566544344569999999999999999999887754444567775
No 318
>PRK06217 hypothetical protein; Validated
Probab=95.05 E-value=0.093 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|.|.|++|.||||+|+++.+++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 319
>PTZ00301 uridine kinase; Provisional
Probab=95.04 E-value=0.021 Score=59.56 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
..+|||.|.+|.||||+|+++.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775443
No 320
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.16 Score=57.95 Aligned_cols=150 Identities=21% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCccccchhhHHHHHHh---hcCC-------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 31 FKGLVGLSSRIEKLISL---LCVG-------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~---l~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
.++.-|.|+...++++. |... ..=.+-|.++|++|.|||-||++++-+..-- +|...- ..+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~sG-----SEF 373 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYASG-----SEF 373 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEeccc-----cch
Confidence 45677888766555554 4321 2236778899999999999999998764322 222211 010
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHH----HHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCCCCC
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIG----ERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDRFGP 163 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~----~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~ 163 (1099)
+ . ++- ..+...++ ..-+.-+++|.+|.+|... .+.+|+...+.+.+
T Consensus 374 d--E----m~V-----------GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 374 D--E----MFV-----------GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred h--h----hhh-----------cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 0 0 000 00122222 2223568999999986432 25666666665554
Q ss_pred CC--eEEEEeCCccccc-c---cC-CCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 164 GS--RIIITTRDKWILD-N---FG-VHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 164 gs--rIiiTTR~~~v~~-~---~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
.. .||-.|-..+.+. . .| .+. .+.|+..+..--.+++..+.-+
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~--~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDR--HVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccce--eEecCCCCcccHHHHHHHHHhc
Confidence 33 3333443333222 1 12 233 5677777777777777777643
No 321
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.02 E-value=0.021 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|+|.|..|+||||+|+++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 322
>PRK03839 putative kinase; Provisional
Probab=95.00 E-value=0.02 Score=58.58 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|.|.|++|+||||+|++++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 323
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.97 E-value=0.089 Score=52.21 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=37.7
Q ss_pred hhHHHHHHhcCCeEEEEEeCC----CChhHHH--HHhcCCCCCCCCCeEEEEeCCcccccccC
Q 001326 125 LPEYIGERLRRMKVLIVLDDV----NKVGQLK--YLAGGIDRFGPGSRIIITTRDKWILDNFG 181 (1099)
Q Consensus 125 ~~~~l~~~L~~kr~LlVLDdv----~~~~~~~--~l~~~~~~~~~gsrIiiTTR~~~v~~~~~ 181 (1099)
..-.|.+.+-+++-+++-|+- |..-.|+ .+...++ ..|..||++|.+.++...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 344566777889999999964 4433443 3333333 46899999999998877763
No 324
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.95 E-value=0.2 Score=54.82 Aligned_cols=39 Identities=33% Similarity=0.280 Sum_probs=27.3
Q ss_pred cchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHH
Q 001326 36 GLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 36 Gr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
+|..+-.--..+|. .+++..|.+.|.+|.|||-||.+..
T Consensus 228 prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHH
Confidence 33433333334443 4678999999999999999988753
No 325
>PRK04040 adenylate kinase; Provisional
Probab=94.95 E-value=0.027 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 326
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.035 Score=55.32 Aligned_cols=116 Identities=22% Similarity=0.183 Sum_probs=60.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCC-hhHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPC-LPEYIGERLR 134 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~ 134 (1099)
.+++|.|..|.|||||++.+...+.. ....+++.... .. ......... .+.- ....+..+ ..-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~--~~~~~~~~~----~i~~-~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IA--KLPLEELRR----RIGY-VPQLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-cc--cCCHHHHHh----ceEE-EeeCCHHHHHHHHHHHHHh
Confidence 68999999999999999999886542 34555554211 00 000111111 0000 00011111 2233455556
Q ss_pred CCeEEEEEeCCC---ChhHHHHHhcCCCC-CCCCCeEEEEeCCccccccc
Q 001326 135 RMKVLIVLDDVN---KVGQLKYLAGGIDR-FGPGSRIIITTRDKWILDNF 180 (1099)
Q Consensus 135 ~kr~LlVLDdv~---~~~~~~~l~~~~~~-~~~gsrIiiTTR~~~v~~~~ 180 (1099)
..+-++++|+.. |......+...+.. ...+..++++|.+.......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 677899999984 22222222222211 12356788888887665543
No 327
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.94 E-value=0.17 Score=55.49 Aligned_cols=53 Identities=17% Similarity=0.035 Sum_probs=36.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
-.++.|.|.+|+||||+|.++......+ -..++|+. -.....++.+.+...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS-------~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS-------LEEPVVRTARRLLGQYA 83 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE-------cccCHHHHHHHHHHHHh
Confidence 4588899999999999999998766444 44567775 23344566666655443
No 328
>PRK00625 shikimate kinase; Provisional
Probab=94.93 E-value=0.021 Score=57.59 Aligned_cols=24 Identities=25% Similarity=0.492 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|.++||+|+||||+|+.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 329
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.93 E-value=0.074 Score=57.65 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=65.1
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccc----ccc-cCCChhH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEEN----IKI-ETPCLPE 127 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~----~~~-~~~~~~~ 127 (1099)
.+.+.++|+|..|.||||+++.+...+... ...+++..... . .......+...+ ..+.... ... .......
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v-~-~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKV-G-IVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEe-e-cchhHHHHHHHh-cccccccccccccccccchHHH
Confidence 446789999999999999999999876543 33444431111 0 000111221110 0000000 000 1111122
Q ss_pred HHHHHhc-CCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCCcccc
Q 001326 128 YIGERLR-RMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRDKWIL 177 (1099)
Q Consensus 128 ~l~~~L~-~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 177 (1099)
.+...++ ..+=++|+|.+...+.+..+.... ..|..||+||-+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 2222322 577899999998887777766554 2578899999876553
No 330
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.88 E-value=0.038 Score=58.95 Aligned_cols=31 Identities=39% Similarity=0.428 Sum_probs=27.2
Q ss_pred CCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 52 FPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 52 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.....+|||.|..|.|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4568999999999999999999999877654
No 331
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.12 Score=60.29 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=24.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..++|+|+|.+|+||||++.++......+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998865443
No 332
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.88 E-value=0.025 Score=59.38 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=24.6
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
....+|+|.|.+|+||||||+.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999976
No 333
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.84 E-value=0.018 Score=57.47 Aligned_cols=29 Identities=28% Similarity=0.325 Sum_probs=23.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
+.|-+.|.+|+||||+|+.+...++++-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 35678999999999999999987765543
No 334
>PRK06762 hypothetical protein; Provisional
Probab=94.82 E-value=0.025 Score=56.94 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+|.|.|++|+||||+|+++.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999886
No 335
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.067 Score=54.12 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=25.8
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
-.+++|.|..|.|||||++.++..... ..+.+++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 358899999999999999999885432 2344444
No 336
>PRK08233 hypothetical protein; Provisional
Probab=94.81 E-value=0.023 Score=58.15 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|+|.|.+|+||||+|+.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 337
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.77 E-value=0.33 Score=47.87 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccccc------ccCC------
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIK------IETP------ 123 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~------~~~~------ 123 (1099)
.+|-|++-.|.||||+|....-+...+--.+.++.-+... ...+-....+.+ ..+.-.... ..+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~--~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG--WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC--CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999999988765554445554433221 123333333332 100000000 0000
Q ss_pred --ChhHHHHHHhc-CCeEEEEEeCCCCh-----hHHHHHhcCCCCCCCCCeEEEEeCCcc
Q 001326 124 --CLPEYIGERLR-RMKVLIVLDDVNKV-----GQLKYLAGGIDRFGPGSRIIITTRDKW 175 (1099)
Q Consensus 124 --~~~~~l~~~L~-~kr~LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIiiTTR~~~ 175 (1099)
...+..++.++ ++-=|+|||++-.. -+.+.+...+....++.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 01222333333 34569999998322 122233222333356779999999864
No 338
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.75 E-value=0.033 Score=58.41 Aligned_cols=28 Identities=43% Similarity=0.624 Sum_probs=24.8
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+...+|+|+|++|+||||||+++...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998764
No 339
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.72 E-value=0.11 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++|.|..|.|||||++.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998754
No 340
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.71 E-value=0.046 Score=59.17 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.|.++|++|+||||+|+++.......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 341
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.67 E-value=0.091 Score=63.17 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+..++|....++++.+.+..-...-..|.|+|..|+|||++|+++++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 46789999999999888887544445677899999999999999999854
No 342
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.66 E-value=0.13 Score=49.07 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=41.7
Q ss_pred eeChHHhcCCCCCcEEEeeCCCCCCCcccCceeecCCCCccCCCCeeEEEeecCCCCcCCCCC--CCCCceEEECCCCCc
Q 001326 390 HLNSLVFEKMPNLRLLKFYMPEYGGVPIMNSKVHLDDGLECLPDGLRYLHWHECPLKSLPSNF--DLENLIELDLPYSKV 467 (1099)
Q Consensus 390 ~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~i 467 (1099)
.+...+|.++.+|+.+.+.. ....+....+....+|+.+.+.++ +..++... ...+|+.+.+.. .+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~----------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~ 69 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN----------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL 69 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS----------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT
T ss_pred EECHHHHhCCCCCCEEEECC----------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc
Confidence 35667888888888888753 123455666666666777777664 66665443 455666666654 44
Q ss_pred ccccccc-cccCCccEEeccC
Q 001326 468 EQLWEGE-KEAFKLKSIDLHQ 487 (1099)
Q Consensus 468 ~~l~~~~-~~l~~L~~L~Ls~ 487 (1099)
..++... ..+.+|+.+++..
T Consensus 70 ~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 70 KSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp -EE-TTTTTT-TTECEEEETT
T ss_pred cccccccccccccccccccCc
Confidence 4443322 3455555555543
No 343
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.66 E-value=0.097 Score=57.92 Aligned_cols=50 Identities=30% Similarity=0.242 Sum_probs=37.1
Q ss_pred HHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...|-.+|. .+-+.-+++-|+|.+|+||||||..+......+-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 344555564 44456689999999999999999998877665555667775
No 344
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.65 E-value=0.058 Score=60.25 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=62.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
-..++|.|..|.||||+++++...+.... ..+.+.+..+..........+ .. .............+.+...|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~--~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FY--SKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----Ee--cCCCCCcCccCHHHHHHHHhc
Confidence 46889999999999999999998765432 234444333222011000000 00 000001112225677778888
Q ss_pred CCeEEEEEeCCCChhHHHHHhcCCCCCCCCCe-EEEEeCCcc
Q 001326 135 RMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSR-IIITTRDKW 175 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsr-IiiTTR~~~ 175 (1099)
..+=.||+|.+...+.++.+... . .|.. ++.|+....
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 88889999999987766544332 2 3333 355655443
No 345
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.62 E-value=0.022 Score=52.47 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
|-|+|.+|+|||++|+.+...+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999988765443
No 346
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.2 Score=59.47 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=90.7
Q ss_pred CCCCccccchhhHHHHHHhhcC--C--------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccC
Q 001326 29 SDFKGLVGLSSRIEKLISLLCV--G--------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESEN 98 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~l~~~l~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 98 (1099)
....+.-|.|+..+++.+.++. + ..=++-|.++|++|.|||.||+++..+..--|-. + |
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~---i------S-- 215 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS---I------S-- 215 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee---c------c--
Confidence 3456789999988888877651 1 1236778899999999999999999865433211 1 0
Q ss_pred CCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh----------------HHHHHhcCCCCCC
Q 001326 99 GHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG----------------QLKYLAGGIDRFG 162 (1099)
Q Consensus 99 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~ 162 (1099)
..+ +..... ........+...+..++-++.|++|.++... .+.++....+.++
T Consensus 216 GS~-------FVemfV----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 216 GSD-------FVEMFV----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred chh-------hhhhhc----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 000 000000 0000002344455556678999999875321 3556666666555
Q ss_pred C--CCeEEEEeCCccccc-----ccCCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 163 P--GSRIIITTRDKWILD-----NFGVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 163 ~--gsrIiiTTR~~~v~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
. |-.|+..|-..+|.. .-..+. .+.|+..+-..-.+++.-|+-.
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDR--qI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDR--QILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcce--eeecCCcchhhHHHHHHHHhhc
Confidence 3 333333333333332 112344 6788888878888888866643
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.51 E-value=0.12 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++|+|..|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5889999999999999999853
No 348
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.47 E-value=0.031 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
...|.|+|++|+||||+|+++.+++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999874
No 349
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.42 E-value=0.064 Score=56.76 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|.|.|++|+||||+|+.+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 350
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.42 E-value=0.034 Score=57.18 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=53.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhccccc---ccCCChhHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIK---IETPCLPEYIGE 131 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~~~~~l~~ 131 (1099)
-..++|.|..|.||||+++++...+... ...+.+.+..+........ . ++...... .......+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNW-------V-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCE-------E-EEEEecCCCCCCCccCHHHHHHH
Confidence 3588999999999999999999876533 2333333222111000000 0 00000000 011225667777
Q ss_pred HhcCCeEEEEEeCCCChhHHHHHh
Q 001326 132 RLRRMKVLIVLDDVNKVGQLKYLA 155 (1099)
Q Consensus 132 ~L~~kr~LlVLDdv~~~~~~~~l~ 155 (1099)
.++..+=.++++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 788888899999999888766544
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.11 Score=52.71 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|.|.|.+|.||||+|+++.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999973
No 352
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.39 E-value=0.043 Score=68.62 Aligned_cols=183 Identities=14% Similarity=0.049 Sum_probs=86.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHH-HhccCceeEEEEecc--------ccccCCCCHHHHHHHHHHHHhcccccccCCC
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNL-ISWEFEGRCFVSNVR--------VESENGHRLVYLRERVLSEIFEENIKIETPC 124 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~~~~--------~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~ 124 (1099)
+.++++|+|+.|.||||+.+.+.-. +..+ ..+++.... ... ...+..+-..+-++.+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~~~~~~~d~i~-~~i~~~~si~~~LStfS~--------- 388 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEHSEIPYFEEIF-ADIGDEQSIEQNLSTFSG--------- 388 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCccccccchhhee-eecChHhHHhhhhhHHHH---------
Confidence 3478999999999999999999764 2111 111221100 000 000000000000111100
Q ss_pred hhHHHHHHhc--CCeEEEEEeCCCC---hhHHHHH----hcCCCCCCCCCeEEEEeCCcccccccCC-CCcceEecCCCC
Q 001326 125 LPEYIGERLR--RMKVLIVLDDVNK---VGQLKYL----AGGIDRFGPGSRIIITTRDKWILDNFGV-HSSNIYEVNGLE 194 (1099)
Q Consensus 125 ~~~~l~~~L~--~kr~LlVLDdv~~---~~~~~~l----~~~~~~~~~gsrIiiTTR~~~v~~~~~~-~~~~~~~l~~L~ 194 (1099)
....+...+. ..+-|+++|++.. ..+-..+ ...+ ...|+.+|+||.+..+...... .....+.+. ++
T Consensus 389 ~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d 465 (771)
T TIGR01069 389 HMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FD 465 (771)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-Ec
Confidence 1122222332 4789999999842 3332222 2221 1357899999998876432211 110011121 11
Q ss_pred HHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 001326 195 YDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVLGSFFHQKSKPDWEKALEKINR 258 (1099)
Q Consensus 195 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~ 258 (1099)
.+ ... |..+. ....+.. ..|-+|++.+ |+|-.+..-|..+.+....+++..+++|..
T Consensus 466 ~~-~l~-p~Ykl-~~G~~g~---S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 466 EE-TLS-PTYKL-LKGIPGE---SYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CC-CCc-eEEEE-CCCCCCC---cHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111 11111 1112221 2344555554 899888888877766656667766666643
No 353
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.37 E-value=0.036 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987653
No 354
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.33 E-value=0.32 Score=52.23 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+-.|+|++|+|||+||..++-.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999998754
No 355
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.19 Score=54.34 Aligned_cols=46 Identities=30% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 45 ISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 45 ~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
-++|..+-+.-+++=|+|+.|.||||+|.+++-.....-..++|++
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 3444444456789999999999999999999887777777889997
No 356
>PRK13947 shikimate kinase; Provisional
Probab=94.33 E-value=0.034 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
-|.|+|++|+||||+|+.+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999987544
No 357
>PRK06547 hypothetical protein; Provisional
Probab=94.31 E-value=0.044 Score=55.24 Aligned_cols=27 Identities=44% Similarity=0.412 Sum_probs=24.3
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
....+|+|.|++|.||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999864
No 358
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.31 E-value=0.14 Score=56.64 Aligned_cols=50 Identities=30% Similarity=0.242 Sum_probs=37.4
Q ss_pred HHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...|-.+|. .+-+.-+++-|+|++|+||||||..++......-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 344555565 34455689999999999999999998876665556677875
No 359
>PRK08356 hypothetical protein; Provisional
Probab=94.29 E-value=0.12 Score=53.53 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999993
No 360
>PRK09354 recA recombinase A; Provisional
Probab=94.29 E-value=0.15 Score=57.00 Aligned_cols=50 Identities=32% Similarity=0.243 Sum_probs=38.6
Q ss_pred HHHHHHhhc-CCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 41 IEKLISLLC-VGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 41 ~~~l~~~l~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...|-.+|. .+-+.-+++-|+|++|+||||||..+.......-..++|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 445556665 44456689999999999999999999877666666778885
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.24 E-value=0.13 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..|.|+|.+|.||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 36789999999999999999987655
No 362
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.23 E-value=0.057 Score=51.40 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=28.0
Q ss_pred hHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 40 RIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 40 ~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.+++-+.+...-..-.+|.+.|.-|.||||+++.+...+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3344444443222334589999999999999999999865
No 363
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.22 E-value=2 Score=47.84 Aligned_cols=48 Identities=31% Similarity=0.241 Sum_probs=33.2
Q ss_pred eEecCCCCHHHHHHHHhhhhcCCCCCC-hhHHHHHHHHHHHhCCCchHH
Q 001326 187 IYEVNGLEYDEARELFCNYAFKENHCP-DDLLALSKCVLKYANGNPLAL 234 (1099)
Q Consensus 187 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 234 (1099)
.++|++++.+|+..++..++-..-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 689999999999999988875433222 223345556666679999654
No 364
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.22 E-value=0.16 Score=55.84 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..++++|+|++|+||||++.+++.....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999887654
No 365
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.22 E-value=0.039 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=23.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
++.+|+|.|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999865
No 366
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.22 E-value=0.035 Score=58.27 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=21.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48889999999999999999874
No 367
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.13 Score=52.15 Aligned_cols=25 Identities=44% Similarity=0.611 Sum_probs=22.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 368
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.14 E-value=0.17 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~ 76 (1099)
.+++|+|..|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999985
No 369
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.13 E-value=0.15 Score=51.67 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+++|.|..|.|||||++.+.....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC
Confidence 5899999999999999999987543
No 370
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.09 E-value=0.14 Score=55.84 Aligned_cols=44 Identities=34% Similarity=0.289 Sum_probs=36.8
Q ss_pred hhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 47 LLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 47 ~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.+..+-+.-+++.|+|.+|+|||++|.++..+...+.+.++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34344566789999999999999999999988777788888886
No 371
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.07 E-value=0.67 Score=50.24 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
..+++++|.+|+||||+++.+...+..+-..+.++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 46999999999999999999987765432334444
No 372
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.07 E-value=0.048 Score=53.92 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=44.6
Q ss_pred EEcCCCCcHHHHHHHHHHHHhccCceeEEEE---eccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCC
Q 001326 60 IWGMAGIGKTTLAGAIFNLISWEFEGRCFVS---NVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRM 136 (1099)
Q Consensus 60 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k 136 (1099)
|.|++|+||||+|+.++.++. | .++. .++...... + .+.+++ .+.........+.-....+.+++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~-s--~~g~~i-~~~l~~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSD-S--ELGKQI-QEYLDNGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTT-S--HHHHHH-HHHHHTTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhh-h--HHHHHH-HHHHHhhccchHHHHHHHHHHHHhhh
Confidence 689999999999999999752 3 2332 111111011 1 111222 22222222222111455566655432
Q ss_pred --eEEEEEeCCC-ChhHHHHHhc
Q 001326 137 --KVLIVLDDVN-KVGQLKYLAG 156 (1099)
Q Consensus 137 --r~LlVLDdv~-~~~~~~~l~~ 156 (1099)
.--+|||+.- +.+|.+.+..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 4557899994 5566666544
No 373
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.04 E-value=0.47 Score=55.71 Aligned_cols=53 Identities=28% Similarity=0.159 Sum_probs=37.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh-ccCceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS-WEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
-.++.|.|.+|+|||++|..+...+. .+-..++|+. -+-...++..+++....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-------lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-------LEMSAEQLGERLLASKS 247 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-------CCCCHHHHHHHHHHHHc
Confidence 35888999999999999999986553 3333456664 34566677777776543
No 374
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.03 E-value=0.15 Score=57.92 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=39.1
Q ss_pred CccccchhhHHHHHHhhcCC------------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 32 KGLVGLSSRIEKLISLLCVG------------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+++||.++..+.+.-.+... ....+-|.++|++|+|||++|+++...+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 57999998888876555421 11246788999999999999999999875544
No 375
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.03 E-value=0.16 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999764
No 376
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.03 E-value=0.18 Score=57.12 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=49.3
Q ss_pred hhhHHHHHHhhcCCC-CCEEEEEEEcCCCCcHHHHHHHHHHHHhcc--CceeEEEEeccccccCCCCHHHHHHHHHHHH
Q 001326 38 SSRIEKLISLLCVGF-PDFRIVGIWGMAGIGKTTLAGAIFNLISWE--FEGRCFVSNVRVESENGHRLVYLRERVLSEI 113 (1099)
Q Consensus 38 ~~~~~~l~~~l~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 113 (1099)
+.-.+.|.+.+...+ .+..+|||.|.-|+||||+.+.+.+++... -...+...+.+.......-...+...+..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 344566777776443 678999999999999999999999988776 2223333344444422223345555555554
No 377
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.01 E-value=0.075 Score=54.02 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=24.0
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..+|+|.|++|+||||+|+++......
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999997754
No 378
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.98 E-value=0.062 Score=54.74 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
+|+|.|.+|+||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 379
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.96 E-value=0.049 Score=55.34 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++|.+.|++|+||||+|+++..+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5889999999999999999988754
No 380
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.4 Score=50.79 Aligned_cols=152 Identities=19% Similarity=0.220 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCC
Q 001326 32 KGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHR 101 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 101 (1099)
.+.-|.+...+.|.+.... ...-.+-|.++|++|.||+-||++|+.+...- |+.. | .
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFSv----S--S-- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFSV----S--S-- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEEe----e--h--
Confidence 5678888888888877542 12236888999999999999999999875432 3321 1 0
Q ss_pred HHHHHHHHHHHHhcccccccCCChhHHHHHHh-cCCeEEEEEeCCCCh---------hHHHHHhc-------CCCCCCCC
Q 001326 102 LVYLRERVLSEIFEENIKIETPCLPEYIGERL-RRMKVLIVLDDVNKV---------GQLKYLAG-------GIDRFGPG 164 (1099)
Q Consensus 102 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~---------~~~~~l~~-------~~~~~~~g 164 (1099)
.++.+...++.. .+...+.+.- .+|+-+|.+|.|+.. +.-..+.. .......|
T Consensus 200 -----SDLvSKWmGESE-----kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 200 -----SDLVSKWMGESE-----KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred -----HHHHHHHhccHH-----HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 012222222111 1233333333 368899999999632 11111111 11222345
Q ss_pred CeEEEEeCCccccccc---CCCCcceEecCCCCHHHHHHHHhhhhcC
Q 001326 165 SRIIITTRDKWILDNF---GVHSSNIYEVNGLEYDEARELFCNYAFK 208 (1099)
Q Consensus 165 srIiiTTR~~~v~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 208 (1099)
.-|+-.|...-++... ..+. .+.++-.+...-..+|.-+.+.
T Consensus 270 vLVLgATNiPw~LDsAIRRRFek--RIYIPLPe~~AR~~MF~lhlG~ 314 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEK--RIYIPLPEAHARARMFKLHLGD 314 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhc--ceeccCCcHHHhhhhheeccCC
Confidence 5566667666554432 1233 4445554555556678777754
No 381
>PRK15115 response regulator GlrR; Provisional
Probab=93.94 E-value=0.79 Score=54.40 Aligned_cols=48 Identities=29% Similarity=0.218 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..++|....+.++.+....-...-..|.|.|.+|+|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 468888887777666554322233456799999999999999998853
No 382
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.93 E-value=0.12 Score=54.55 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..++.+.+.....+..+|||.|.||+||+||.-++...++.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344555554444567899999999999999999998877654
No 383
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.047 Score=55.32 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=23.9
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
..+|+|-||=|+||||||+++.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 384
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.91 E-value=0.077 Score=55.12 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
....+|+|+|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999999775443334555
No 385
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.89 E-value=0.18 Score=54.00 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.|-++|..+-+.-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 344556545556689999999999999999997665434556778876
No 386
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.87 E-value=0.045 Score=54.94 Aligned_cols=45 Identities=33% Similarity=0.260 Sum_probs=32.5
Q ss_pred cccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 34 LVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 34 ~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
+||.+..++++.+.+..-.....-|.|+|..|+||+.+|+++++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888777632222245569999999999999999994
No 387
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.83 E-value=0.9 Score=56.55 Aligned_cols=50 Identities=28% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 30 DFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 30 ~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..+.++|.+..+.++.+....-...-.-|.|+|..|+||+++|+++++.-
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 45779999998888877775333333447799999999999999999853
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.23 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.77 E-value=0.081 Score=53.07 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
|.|.|.+|+||||+++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 390
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.14 Score=56.22 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=46.8
Q ss_pred HHHHHHHHhh-cccCCCCCCccccchhhHHHHHHhhcCC----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 14 MGFQEYQRLK-EKSVSSDFKGLVGLSSRIEKLISLLCVG----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 14 ~i~~~v~~~l-~~~~~~~~~~~vGr~~~~~~l~~~l~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+|+.+.+-+ ..++--.=+++.|.++..+-|.+..... ..--+-|.++|++|.|||-||++|+.+...
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 4454444333 2233333478999998888777765421 233577889999999999999999997653
No 391
>PRK05439 pantothenate kinase; Provisional
Probab=93.76 E-value=0.088 Score=58.00 Aligned_cols=30 Identities=33% Similarity=0.334 Sum_probs=25.8
Q ss_pred CCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 52 FPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 52 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.....+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999886643
No 392
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.76 E-value=0.17 Score=56.07 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=54.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccC--ceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEF--EGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERL 133 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 133 (1099)
+.+.|.|..|.||||+++++.+.+.... +..+-+.+..+......+... +. ... ......+.++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~-~~~--~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LR-TSD--DAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EE-ecC--CCCCHHHHHHHHh
Confidence 4677999999999999999999875532 233444333222100000000 00 000 1113667888889
Q ss_pred cCCeEEEEEeCCCChhHHHHHh
Q 001326 134 RRMKVLIVLDDVNKVGQLKYLA 155 (1099)
Q Consensus 134 ~~kr~LlVLDdv~~~~~~~~l~ 155 (1099)
+..+=.||+..+.+.+.++.+.
T Consensus 202 R~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHHH
Confidence 9888899999999888776543
No 393
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.73 E-value=0.13 Score=52.82 Aligned_cols=34 Identities=26% Similarity=0.122 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
++.|.|.+|+|||++|.++......+-..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3679999999999999998776544445677775
No 394
>PRK13949 shikimate kinase; Provisional
Probab=93.69 E-value=0.054 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999764
No 395
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.71 Score=57.45 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=64.9
Q ss_pred CccccchhhHHHHHHhhcC---C--C-CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHH
Q 001326 32 KGLVGLSSRIEKLISLLCV---G--F-PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~---~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
+.++|-++.+..+.+.+.. + . .......+.|+.|+|||-||+++..-+-+..+..+-++ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 4688989999888888762 1 1 13456678999999999999999998755544433332 1222
Q ss_pred HHHHHHHHhcccccccCCChhHHHHHHhcCCeE-EEEEeCCCCh
Q 001326 106 RERVLSEIFEENIKIETPCLPEYIGERLRRMKV-LIVLDDVNKV 148 (1099)
Q Consensus 106 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~ 148 (1099)
++ .+.+.+..+.--.......+.+.++++++ +|.||||+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22 33333332221111145577777887775 6667999754
No 396
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.65 E-value=0.29 Score=48.81 Aligned_cols=115 Identities=17% Similarity=-0.027 Sum_probs=59.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccc----cccCC----C--
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENI----KIETP----C-- 124 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~----~-- 124 (1099)
..+|-|++-.|.||||.|..+.-+...+--.++++.-.... ...+-....+.+.-.+..... ...+. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~--~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA--WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC--cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 36788888899999999999988765544334333222211 122333333322000000000 00000 0
Q ss_pred --hhHHHHHHhc-CCeEEEEEeCCC--------ChhHHHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 125 --LPEYIGERLR-RMKVLIVLDDVN--------KVGQLKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 125 --~~~~l~~~L~-~kr~LlVLDdv~--------~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
+.+..++.+. ++-=|+|||.+. +.+++-.+... ..++..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCC
Confidence 2223334443 344699999983 22333344333 35677999999987
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.65 E-value=0.087 Score=51.08 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRC 87 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 87 (1099)
++|.|+|..|+|||||++.+.+.+..+--..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 47899999999999999999998775433334
No 398
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.63 E-value=0.14 Score=55.75 Aligned_cols=56 Identities=29% Similarity=0.231 Sum_probs=43.6
Q ss_pred CCCCccccchhhHHH---HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 29 SDFKGLVGLSSRIEK---LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
...+.+||..+..+. +.+++..+.-.-+.|.|+|++|.|||+||..+.+.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 456789998877654 56666555445688899999999999999999999876544
No 399
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.62 E-value=0.028 Score=35.05 Aligned_cols=18 Identities=56% Similarity=0.809 Sum_probs=9.4
Q ss_pred CCEEEccCCCCccccccc
Q 001326 757 LESLNLAENNFESLPSSI 774 (1099)
Q Consensus 757 L~~L~L~~n~l~~lp~~l 774 (1099)
|++|+|++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 400
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.62 E-value=0.33 Score=58.48 Aligned_cols=51 Identities=24% Similarity=0.128 Sum_probs=38.5
Q ss_pred CCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
....+.++|....++++.+.+..-...-..|.|+|..|+||+++|++++..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 345578999999888877766522222334779999999999999998764
No 401
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.29 Score=51.83 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=35.2
Q ss_pred hHHHHHHhcCCeEEEEEeCC----CC--hhHHHHHhcCCCCCCCCCeEEEEeCCccccccc
Q 001326 126 PEYIGERLRRMKVLIVLDDV----NK--VGQLKYLAGGIDRFGPGSRIIITTRDKWILDNF 180 (1099)
Q Consensus 126 ~~~l~~~L~~kr~LlVLDdv----~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 180 (1099)
.-.+.+.|.+++=|+|||+- |. ...+-.+...+. ..|..|+++|-|-+....+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence 34566778899999999974 32 233444544443 3388999999987654443
No 402
>PRK13948 shikimate kinase; Provisional
Probab=93.57 E-value=0.058 Score=54.82 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
..+.|.++||.|+||||+++.+.+++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578889999999999999999998743
No 403
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.57 E-value=0.22 Score=50.92 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=57.3
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhc---cCce-eEEEEeccc-cccCCCCHHHHHHHHHHHHhcccccccCCChhHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISW---EFEG-RCFVSNVRV-ESENGHRLVYLRERVLSEIFEENIKIETPCLPEY 128 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~---~f~~-~~~~~~~~~-~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~ 128 (1099)
...-..|.|++|+||||+.+.++.-+.. +|-. .+-+.+-+. ......+..+.....--+++..+.+.. ....+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~--gmmma 213 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAE--GMMMA 213 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHH--HHHHH
Confidence 3444679999999999999999885433 3432 222222211 110011111111111111111111100 01222
Q ss_pred HHHHhcCCeEEEEEeCCCChhHHHHHhcCCCCCCCCCeEEEEeCC
Q 001326 129 IGERLRRMKVLIVLDDVNKVGQLKYLAGGIDRFGPGSRIIITTRD 173 (1099)
Q Consensus 129 l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 173 (1099)
++. -.+=++|.|.+...++..++.... ..|.++|.|..-
T Consensus 214 Irs---m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 214 IRS---MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHh---cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 222 356689999998888777766554 568888777653
No 404
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.56 E-value=0.05 Score=55.43 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|+|.|.+|.||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999975
No 405
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.53 E-value=0.1 Score=54.40 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=37.0
Q ss_pred hhHHHHHHhcCCeEEEEEeCCC------ChhHHHHHhcCCCCCCCCCeEEEEeCCcccccccC
Q 001326 125 LPEYIGERLRRMKVLIVLDDVN------KVGQLKYLAGGIDRFGPGSRIIITTRDKWILDNFG 181 (1099)
Q Consensus 125 ~~~~l~~~L~~kr~LlVLDdv~------~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~ 181 (1099)
..-.+.+.|-..+-+|+-|+-. +...+-.+..... ...|..||+.|.|..++..+.
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC
Confidence 3445677788899999999752 2223333333321 135789999999999988653
No 406
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.48 E-value=0.054 Score=57.13 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999775
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.47 E-value=0.61 Score=52.54 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=25.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh--ccCceeEEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS--WEFEGRCFVS 90 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~ 90 (1099)
-++|.++|+.|+||||-..+++.+.. ..=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 79999999999999987666666543 3333445553
No 408
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.45 E-value=0.15 Score=54.39 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccc
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVES 96 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 96 (1099)
-.++...+.....+..+|||.|.||+||+||.-++-.++..+-..+.-+ .+...|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl-AVDPSS 91 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL-AVDPSS 91 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE-EECCCC
Confidence 3456666666667789999999999999999999988776554433333 344444
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.42 E-value=0.56 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-++++++|+.|+||||++.+++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998664
No 410
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.42 E-value=0.066 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
|.|+|++|.||||+|+.+...+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998763
No 411
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.40 E-value=0.054 Score=56.30 Aligned_cols=23 Identities=48% Similarity=0.702 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|||.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.40 E-value=0.058 Score=52.21 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
.|+|+|+.|+|||||++.+.+.....|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998754443
No 413
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.39 E-value=0.096 Score=59.40 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=39.5
Q ss_pred CccccchhhHHHHHHhhcC---------C---CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 32 KGLVGLSSRIEKLISLLCV---------G---FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
.+++|.+..++.+..++.. + ....+.|.++|++|+|||++|+++...+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4699999998888777632 0 01136788999999999999999999775444
No 414
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.39 E-value=0.067 Score=52.94 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+-|.++||.|+||||+.+++++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3478999999999999999998775554
No 415
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.38 E-value=5.3 Score=44.15 Aligned_cols=168 Identities=8% Similarity=0.001 Sum_probs=90.0
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc---------Cc-eeEEEEeccccccCCCCHHHHHHHHH
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE---------FE-GRCFVSNVRVESENGHRLVYLRERVL 110 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~ll 110 (1099)
++.+...+..+ .-.++..++|..|.||+++|+++.+.+-.. .+ ...++. ... ....+.++. ++.
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g---~~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD---KDLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC---CcCCHHHHH-HHH
Confidence 34455555322 235677799999999999999999876221 11 111111 000 112222222 111
Q ss_pred HHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh--HHHHHhcCCCCCCCCCeEEEEeC-CcccccccCCCCcce
Q 001326 111 SEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG--QLKYLAGGIDRFGPGSRIIITTR-DKWILDNFGVHSSNI 187 (1099)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR-~~~v~~~~~~~~~~~ 187 (1099)
..+.-. ..-.+.+=++|+|+++... ....|...+....+.+.+|++|. ...+..... ....+
T Consensus 79 ~~~~~~--------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~ 143 (299)
T PRK07132 79 NKLYFS--------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQV 143 (299)
T ss_pred HHhccC--------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEE
Confidence 111100 0001466677889887654 35556655555566777776554 444443321 12238
Q ss_pred EecCCCCHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 001326 188 YEVNGLEYDEARELFCNYAFKENHCPDDLLALSKCVLKYANGNPLALTVL 237 (1099)
Q Consensus 188 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 237 (1099)
+++.++++++..+.+.... . .+ +.++.++..++|.=-|+..+
T Consensus 144 ~~f~~l~~~~l~~~l~~~~----~-~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN----K-EK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EECCCCCHHHHHHHHHHcC----C-Ch---hHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988776541 1 11 34555666677633455543
No 416
>PRK13946 shikimate kinase; Provisional
Probab=93.35 E-value=0.064 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.2
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.+.|++.|++|+||||+|+.+.+++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999874
No 417
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.32 E-value=0.13 Score=51.40 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.5
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
...+++|+|..|+|||||++.+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999877653
No 418
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.31 E-value=0.21 Score=54.26 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=29.9
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
+.-.++.|.|.+|+||||+|.++......+-+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44678999999999999999998765444455677875
No 419
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.29 E-value=0.06 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
++.|.|++|+||||+|+.+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46899999999999999998873
No 420
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.28 E-value=0.14 Score=59.88 Aligned_cols=92 Identities=22% Similarity=0.220 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccC------CChhHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIET------PCLPEY 128 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~------~~~~~~ 128 (1099)
+-.+|+|.+|+|||||++.+.+.+.. +-+..+++..+.+.. ..+..+.+.+-.++......... ....-.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp---eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP---EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch---hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999997644 334445555554433 22333333331222111111000 001112
Q ss_pred HHHHh--cCCeEEEEEeCCCChhH
Q 001326 129 IGERL--RRMKVLIVLDDVNKVGQ 150 (1099)
Q Consensus 129 l~~~L--~~kr~LlVLDdv~~~~~ 150 (1099)
+-+++ .++.|||++|++.....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHHH
Confidence 23333 58999999999976543
No 421
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.28 E-value=0.12 Score=57.25 Aligned_cols=60 Identities=28% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCCCccccchhhHHH---HHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEE
Q 001326 29 SDFKGLVGLSSRIEK---LISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCF 88 (1099)
Q Consensus 29 ~~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 88 (1099)
.....+||..+..+. +.+++..+.-.-+.|.+.|++|.|||+||.++.+.+..+.+++..
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 345789999877664 445554433234788899999999999999999999877665443
No 422
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.26 E-value=0.39 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.037 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
++++|.|+.|.||||+.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999764
No 423
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.26 E-value=0.73 Score=61.18 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.3
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-.+-|.++|++|.|||.||++++....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999998643
No 424
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.24 E-value=0.067 Score=52.42 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+|.|.|.+|+||||+|+.+..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 425
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.13 Score=52.76 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 32 KGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
.++=|.|-...++.+.... +-+..+-|.++|++|.|||.||++|++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3566777777777776542 224567888999999999999999999765544
No 426
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.24 E-value=0.071 Score=54.41 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 427
>PRK14528 adenylate kinase; Provisional
Probab=93.22 E-value=0.2 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 428
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.22 E-value=0.25 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|.|.|++|+||||+|+.+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 429
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.094 Score=55.08 Aligned_cols=60 Identities=30% Similarity=0.376 Sum_probs=45.1
Q ss_pred cccCCCCCCccccchhhHHHHHHhhcCC-----------CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 24 EKSVSSDFKGLVGLSSRIEKLISLLCVG-----------FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 24 ~~~~~~~~~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
...|.....++=|.++.+.+|.+..... -...+-|-+||.+|.|||-||++|+|+.+.-|
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3444445567888999999998887532 12356677999999999999999999876554
No 430
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.21 E-value=0.17 Score=61.79 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=44.2
Q ss_pred CCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEec
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNV 92 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~ 92 (1099)
.+.++|.++.++.+...+... +.+.++|++|+||||+|+++.+.+... |...+++.|.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 357899998888888777533 255599999999999999999987554 4556677654
No 431
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.21 E-value=0.19 Score=56.91 Aligned_cols=103 Identities=19% Similarity=0.343 Sum_probs=58.7
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGER 132 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 132 (1099)
...+-+-|||..|.|||.|+-.+|+.+..+-..++. ......++-+.+.... ...+....+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~H-------------Fh~Fm~~vh~~l~~~~---~~~~~l~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVH-------------FHEFMLDVHSRLHQLR---GQDDPLPQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccc-------------ccHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 347788899999999999999999965432111111 1222233333332221 122235556666
Q ss_pred hcCCeEEEEEeCC--CChhH---HHHHhcCCCCCCCCCeEEEEeCCc
Q 001326 133 LRRMKVLIVLDDV--NKVGQ---LKYLAGGIDRFGPGSRIIITTRDK 174 (1099)
Q Consensus 133 L~~kr~LlVLDdv--~~~~~---~~~l~~~~~~~~~gsrIiiTTR~~ 174 (1099)
+.++..||.||++ .+..+ +..|...+ +..|. |||+|.+.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 7777789999986 34333 44444433 23454 55555554
No 432
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.20 E-value=0.14 Score=62.35 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=53.7
Q ss_pred CCCCCCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc-cCceeEEEEeccccccCCCCHHHH
Q 001326 27 VSSDFKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW-EFEGRCFVSNVRVESENGHRLVYL 105 (1099)
Q Consensus 27 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l 105 (1099)
++..-+.++|.+..++.|...+... +.+.++|.+|+||||+|+++.+.+.. .++...|+.|. ......+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np------~~~~~~~ 95 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP------EDPNNPK 95 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC------CcchHHH
Confidence 4445577999998888888877533 36889999999999999999987643 34667787752 2334445
Q ss_pred HHHHHHH
Q 001326 106 RERVLSE 112 (1099)
Q Consensus 106 ~~~ll~~ 112 (1099)
.+.+..+
T Consensus 96 ~~~v~~~ 102 (637)
T PRK13765 96 IRTVPAG 102 (637)
T ss_pred HHHHHHh
Confidence 5555443
No 433
>PRK14526 adenylate kinase; Provisional
Probab=93.17 E-value=0.18 Score=52.66 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|+|+|++|+||||+|+.+....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998765
No 434
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.17 E-value=0.089 Score=62.44 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=45.3
Q ss_pred CCCCCccccchhhHHHHHHhhcC---CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 28 SSDFKGLVGLSSRIEKLISLLCV---GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 28 ~~~~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
|...++++.-.+.++++..||.. +....+++.+.|++|+||||.++.+++++. |+..-|.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 44445677777888999999873 334467999999999999999999999763 4444454
No 435
>PRK05973 replicative DNA helicase; Provisional
Probab=93.15 E-value=0.24 Score=52.44 Aligned_cols=37 Identities=19% Similarity=0.009 Sum_probs=28.8
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.-.++.|.|.+|+|||++|..+......+-..++|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468889999999999999998776544545566764
No 436
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.15 E-value=0.2 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.4
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..-+|.|.|.+|+||||+|+++++++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999999876
No 437
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=93.10 E-value=0.84 Score=50.92 Aligned_cols=52 Identities=25% Similarity=0.225 Sum_probs=35.6
Q ss_pred eEecCCCCHHHHHHHHhhhhcCC----CCCChhHHHHHHHHHHHhCCCchHHHHHhhhc
Q 001326 187 IYEVNGLEYDEARELFCNYAFKE----NHCPDDLLALSKCVLKYANGNPLALTVLGSFF 241 (1099)
Q Consensus 187 ~~~l~~L~~~ea~~Lf~~~a~~~----~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 241 (1099)
+++|+..+.+|+.++...+.-.. ..+. ++.-+++.-..+|+|--++.++.++
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 68899999999998887665321 1121 3445667777899996667666655
No 438
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.05 E-value=0.11 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
+++|+|+.|+||||++.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999988765
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.04 E-value=0.19 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|.|.|++|+||||+|+.+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998864
No 440
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.04 E-value=0.038 Score=53.67 Aligned_cols=46 Identities=30% Similarity=0.231 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 35 VGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 35 vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777777777777653333445678999999999999999998543
No 441
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.03 E-value=0.097 Score=57.07 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+-|.++|+.|+|||++++....+..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 4567999999999999999887543
No 442
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.03 E-value=0.15 Score=50.11 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.0
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
...+|-+.|.+|.||||||.+++.++..+.- .+++-
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~-~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGY-HVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCC-eEEEe
Confidence 4578889999999999999999998876654 34443
No 443
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.03 E-value=0.078 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+.|+|+|+.|.||||+|+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998753
No 444
>PRK13975 thymidylate kinase; Provisional
Probab=93.01 E-value=0.091 Score=54.51 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
.+|+|.|+.|+||||+|+.+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999998864
No 445
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.00 E-value=0.38 Score=53.95 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc------CceeEEEE
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE------FEGRCFVS 90 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 90 (1099)
.+.++|..+-..-.++-|+|.+|+||||++.+++...... -..++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3445554443456888999999999999999998764321 12567775
No 446
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.99 E-value=0.49 Score=48.81 Aligned_cols=24 Identities=38% Similarity=0.385 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
++.|+|.+|+||||++..+...+.
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 778999999999999999987654
No 447
>PRK14529 adenylate kinase; Provisional
Probab=92.98 E-value=0.32 Score=51.03 Aligned_cols=91 Identities=20% Similarity=0.102 Sum_probs=47.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCC-
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRM- 136 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k- 136 (1099)
|.|.|++|+||||+|+.+..++.-.+-.. -..+++.......+... +.+.........+.-....+.+++.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~--gdllr~~i~~~t~lg~~----i~~~i~~G~lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIES--GAIFREHIGGGTELGKK----AKEYIDRGDLVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCccc--chhhhhhccCCChHHHH----HHHHHhccCcchHHHHHHHHHHHHhccC
Confidence 67899999999999999998764322100 01111111011112222 222332222222222566677776532
Q ss_pred eEEEEEeCCC-ChhHHHHH
Q 001326 137 KVLIVLDDVN-KVGQLKYL 154 (1099)
Q Consensus 137 r~LlVLDdv~-~~~~~~~l 154 (1099)
.-=+|||+.- +.+|.+.|
T Consensus 77 ~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 77 KNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 3458999994 55565544
No 448
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.97 E-value=0.47 Score=60.61 Aligned_cols=224 Identities=17% Similarity=0.226 Sum_probs=107.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc-cC---ceeEEEE--eccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISW-EF---EGRCFVS--NVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYI 129 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~f---~~~~~~~--~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l 129 (1099)
.-+.|+|-+|.||||....+.-.... .+ +..+|+. ............ .+..-+...+........ .....
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~---~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQ---LIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcch---hhHHH
Confidence 36789999999999999998764322 22 1223322 111111000000 122222222211111111 12222
Q ss_pred HHHhcCCeEEEEEeCCCChhH---------HHHHhcCCCCCCCCCeEEEEeCCcccccccCCCCcceEecCCCCHHHHHH
Q 001326 130 GERLRRMKVLIVLDDVNKVGQ---------LKYLAGGIDRFGPGSRIIITTRDKWILDNFGVHSSNIYEVNGLEYDEARE 200 (1099)
Q Consensus 130 ~~~L~~kr~LlVLDdv~~~~~---------~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~l~~L~~~ea~~ 200 (1099)
.+.++..++|+++|.++.... +..+.+. -+.+.+|+|+|....-.....-. .+++..+.++.-..
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~--~~ei~~~~~~~i~~ 372 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFA--VFEIYKFLDLQINQ 372 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhh--hccchhhhHHHHHH
Confidence 577889999999999976542 2333332 46889999998775433221111 45555555554332
Q ss_pred HHh--------hhhcCCCCCC--hhHHHH---HHHHHHHhCCCchHHHHHhhhcC------CCCHHHHHHHHHHHhcCCC
Q 001326 201 LFC--------NYAFKENHCP--DDLLAL---SKCVLKYANGNPLALTVLGSFFH------QKSKPDWEKALEKINRISD 261 (1099)
Q Consensus 201 Lf~--------~~a~~~~~~~--~~~~~~---~~~i~~~~~GlPLal~~lg~~L~------~~~~~~w~~~l~~l~~~~~ 261 (1099)
... ...++..... .....+ ..+-++.....|+++.+.+.... .....-++.+++.+-...+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d 452 (824)
T COG5635 373 FILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGRED 452 (824)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccc
Confidence 222 1112211111 011111 12234444788999988875443 1344556777766554443
Q ss_pred chhHHHHhhcccCCC-hhhhh-HHhhhccc
Q 001326 262 PDIYDVLKISYNDLR-PEEKS-IFLDIACF 289 (1099)
Q Consensus 262 ~~i~~~l~~sy~~L~-~~~k~-~fl~la~f 289 (1099)
..-.......|+.+. ++..+ .+..+|.+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 453 ETRGIKWSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred hhhhhcchhhhcccchHHHHHHHHHHHHHH
Confidence 222222334455553 33333 55555543
No 449
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=1.4 Score=52.56 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=86.1
Q ss_pred CccccchhhHHHHHHhhcCCC-----------CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 32 KGLVGLSSRIEKLISLLCVGF-----------PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~~-----------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
+++=|+.+..+-+++.+.... .-..-|.++|++|.|||-||-++.....-+ |+. + .
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v-------K 733 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V-------K 733 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e-------c
Confidence 456777777777777765332 123467799999999999999999865332 332 1 1
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCChh-------------HHHHHhcCCCC--CCCCC
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKVG-------------QLKYLAGGIDR--FGPGS 165 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~--~~~gs 165 (1099)
|.. ++..-.+. +.....+...+.-.-|++.+.+|.++... -..+++..++. .-.|.
T Consensus 734 GPE-----lL~KyIGa----SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 734 GPE-----LLSKYIGA----SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred CHH-----HHHHHhcc----cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 221 22222211 11113333444445789999999986542 24555555432 12455
Q ss_pred eEE-EEeCCccc----ccccCCCCcceEecCCCCHHHHHHHHhhhh
Q 001326 166 RII-ITTRDKWI----LDNFGVHSSNIYEVNGLEYDEARELFCNYA 206 (1099)
Q Consensus 166 rIi-iTTR~~~v----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 206 (1099)
-|+ .|||..-+ ++--..++ .+.-+..++.|-++++...+
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~--~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDK--LVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EEEEecCCccccCHhhcCCCccce--eeeCCCCCcHHHHHHHHHHh
Confidence 666 45665432 11112344 45556667778888886655
No 450
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.93 E-value=0.16 Score=56.12 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=43.6
Q ss_pred CccccchhhHHHHHHhhcCC----CCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 32 KGLVGLSSRIEKLISLLCVG----FPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
+.++|+++.++++.+.+... +..-+++.+.|+.|.||||||+.+-+-+...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 47999999999999998732 3457999999999999999999998876544
No 451
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.89 E-value=0.13 Score=59.43 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHhhc-------CCC-------CCEEEEEEEcCCCCcHHHHHHHHHHHHhccC
Q 001326 32 KGLVGLSSRIEKLISLLC-------VGF-------PDFRIVGIWGMAGIGKTTLAGAIFNLISWEF 83 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~-------~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 83 (1099)
+++||.+..++.+...+. ... ...+.|.++|++|+|||++|+.++......|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 458999988887755441 100 0125678999999999999999998764433
No 452
>PRK15453 phosphoribulokinase; Provisional
Probab=92.88 E-value=0.14 Score=54.93 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
....+|+|.|-+|.||||+|+++.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999986653
No 453
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.88 E-value=0.18 Score=55.86 Aligned_cols=35 Identities=34% Similarity=0.286 Sum_probs=27.6
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
.+++.+.|.||+||||+|.+..-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999887766665443333
No 454
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.87 E-value=0.087 Score=54.80 Aligned_cols=24 Identities=29% Similarity=0.086 Sum_probs=21.2
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
..++++|.|..|.||||+.+.+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999875
No 455
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.84 E-value=0.088 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
+|.|-|.+|.||||+|+.+.+...-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999997643
No 456
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.81 E-value=0.32 Score=56.60 Aligned_cols=90 Identities=21% Similarity=0.190 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc-CceeEEEEeccccccCCCCHHHHHHHHHHHHhcccc----cccCCC------
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE-FEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENI----KIETPC------ 124 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~------ 124 (1099)
+-++|.|.+|+|||||+..+.+....+ -+.++|. .+.+ ....+..+.+.+...-..... ...+..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE---R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE---RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc---chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 578999999999999999998866533 3444444 3433 233444454444432111100 011111
Q ss_pred ---hhHHHHHHh---cCCeEEEEEeCCCChh
Q 001326 125 ---LPEYIGERL---RRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 125 ---~~~~l~~~L---~~kr~LlVLDdv~~~~ 149 (1099)
..-.+.+++ +++++|+++||+....
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 112233333 3789999999995443
No 457
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.80 E-value=0.2 Score=54.34 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCc
Q 001326 52 FPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFE 84 (1099)
Q Consensus 52 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 84 (1099)
..+..+|.|.|.+|.|||||+..+.+.+.....
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 356899999999999999999999998876643
No 458
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.80 E-value=0.088 Score=54.87 Aligned_cols=39 Identities=28% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEec
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNV 92 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 92 (1099)
+...+|.++||+|.||||..+.++..+..++.. .|+.|.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNL 55 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINL 55 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeC
Confidence 346678899999999999999999987766543 455554
No 459
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.79 E-value=0.082 Score=51.76 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIF 76 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~ 76 (1099)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999997
No 460
>PHA02774 E1; Provisional
Probab=92.77 E-value=0.34 Score=57.07 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 41 IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 41 ~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+..+..++. +.+....+.|+|++|.|||.+|.++.+-+.
T Consensus 421 l~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 421 LTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555553 335556889999999999999999999764
No 461
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=92.74 E-value=0.096 Score=53.90 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
--|.|+|.+|+|||||++.+.+
T Consensus 7 ~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3456999999999999999876
No 462
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.73 Score=54.46 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHhhcC-----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCC
Q 001326 32 KGLVGLSSRIEKLISLLCV-----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGH 100 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 100 (1099)
..+-|....+..+.+.... +....+-+..+|++|.|||-+|++|.++... .+|..+..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a----~~~~i~~p------- 252 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA----FLFLINGP------- 252 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc----eeEecccH-------
Confidence 3455666666666665531 1234678889999999999999999998652 23333211
Q ss_pred CHHHHHHHHHHHHhcccccccCCChhHHHHHHhcCC-eEEEEEeCCCChh------------HHHHHhcCCCCCCCCCeE
Q 001326 101 RLVYLRERVLSEIFEENIKIETPCLPEYIGERLRRM-KVLIVLDDVNKVG------------QLKYLAGGIDRFGPGSRI 167 (1099)
Q Consensus 101 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~------------~~~~l~~~~~~~~~gsrI 167 (1099)
++++.... .....+...+.+..+.+ +..|.+|+++..- -..++..-..+.++.+++
T Consensus 253 -------eli~k~~g----Ete~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~v 321 (693)
T KOG0730|consen 253 -------ELISKFPG----ETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKV 321 (693)
T ss_pred -------HHHHhccc----chHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcE
Confidence 11222111 11112455666666777 8888889875321 112222223333434443
Q ss_pred --EEEeCCcccccc-c--C-CCCcceEecCCCCHHHHHHHHhhhhcCCCCC-ChhHHHHHHHHHHHhCCCc
Q 001326 168 --IITTRDKWILDN-F--G-VHSSNIYEVNGLEYDEARELFCNYAFKENHC-PDDLLALSKCVLKYANGNP 231 (1099)
Q Consensus 168 --iiTTR~~~v~~~-~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~GlP 231 (1099)
|-|||...-..- . | .+. -+++.-.+..+-.++.....-.-+.. ..++.+ ++..+.|.-
T Consensus 322 ivl~atnrp~sld~alRRgRfd~--ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~----iA~~thGyv 386 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDR--EVEIGIPGSDGRLDILRVLTKKMNLLSDVDLED----IAVSTHGYV 386 (693)
T ss_pred EEEEecCCccccChhhhcCCCcc--eeeecCCCchhHHHHHHHHHHhcCCcchhhHHH----HHHHccchh
Confidence 345554433221 1 1 233 67788888888888877666433333 234444 444455543
No 463
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.73 E-value=0.11 Score=53.75 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
..+|.|.|.+|+||||+|+.+.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 464
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.70 E-value=0.21 Score=61.60 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
-..|+|+|..|.||||||+.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999854
No 465
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.69 E-value=1.1 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
-++|+++|+.|+||||.+.++.....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987653
No 466
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.69 E-value=0.057 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.054 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHH
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
++.+++.|+|..|.||||+.+.+..
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 3567999999999999999999865
No 467
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.69 E-value=0.16 Score=61.37 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=39.9
Q ss_pred CCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
++..+.|.+-.+.|.++.......-.+|.|+|++|+||||+|++++.++..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 345677777777777777654455568899999999999999999998764
No 468
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.67 E-value=0.27 Score=51.31 Aligned_cols=88 Identities=23% Similarity=0.294 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccc----cccCCC-hhH---
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENI----KIETPC-LPE--- 127 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~-~~~--- 127 (1099)
.-++|.|.+|+|||+|+..+.+..... ..+|+. +.+ ....+..+.+++...-..+.. ...+.. ..+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~-iGe---r~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL-IGE---RGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE-ESE---CHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee-ccc---cchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 467899999999999999999876433 234543 222 233445555555333111110 011111 111
Q ss_pred -----HHHHHh--cCCeEEEEEeCCCChh
Q 001326 128 -----YIGERL--RRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 128 -----~l~~~L--~~kr~LlVLDdv~~~~ 149 (1099)
.+.+++ +++.+|+++||+....
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHHH
Confidence 112222 5899999999995443
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.65 E-value=0.37 Score=51.38 Aligned_cols=48 Identities=25% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.|-+++..+-+.-.++.|.|.+|.||||+|.++......+-+.++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344445434345579999999999999999987664434455677775
No 470
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.64 E-value=0.35 Score=55.27 Aligned_cols=35 Identities=31% Similarity=0.292 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH--hccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI--SWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~--~~~f~~~~~~~ 90 (1099)
+++.|.|.+|.|||.||-.++.++ ........++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999988 55666666665
No 471
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.63 E-value=0.3 Score=57.85 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=54.5
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccccccCCChhHHHHHHhc
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENIKIETPCLPEYIGERLR 134 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 134 (1099)
..+|.|.|+.|.||||+..++.+.+...-...+-+.+-.+.. -.++.+ .. -...........++..|+
T Consensus 242 ~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~--~~~~~q--------~~--v~~~~g~~f~~~lr~~LR 309 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ--IEGIGQ--------IQ--VNPKIGLTFAAGLRAILR 309 (486)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee--cCCCce--------EE--EccccCccHHHHHHHHHh
Confidence 458999999999999999998887643322334443221111 111110 00 000111125778888999
Q ss_pred CCeEEEEEeCCCChhHHHHH
Q 001326 135 RMKVLIVLDDVNKVGQLKYL 154 (1099)
Q Consensus 135 ~kr~LlVLDdv~~~~~~~~l 154 (1099)
..+=.|++.++.+.+.....
T Consensus 310 ~dPDvI~vGEiRd~eta~~a 329 (486)
T TIGR02533 310 QDPDIIMVGEIRDLETAQIA 329 (486)
T ss_pred cCCCEEEEeCCCCHHHHHHH
Confidence 99999999999998865543
No 472
>PHA02244 ATPase-like protein
Probab=92.61 E-value=0.11 Score=57.90 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=32.1
Q ss_pred CccccchhhHH----HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 32 KGLVGLSSRIE----KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 32 ~~~vGr~~~~~----~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
..++|....+. .+..++..+ .-|.|+|.+|+|||++|++++......
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44677555553 444444322 246689999999999999999976443
No 473
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.59 E-value=0.42 Score=45.43 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=26.2
Q ss_pred ccCCCCCcEEEeCCcccccccccccccCccccEEeccCCCCCCccchhhcCCCCCCEEEccCCCCcccCc-ccccCCCCc
Q 001326 588 IESLPNLKILNLGFCKRLKRVSTGICKLKYLRCLYLLDCSDLESFPEILEKMEPLEKLALDRSGIKELPS-SIENLEGLK 666 (1099)
Q Consensus 588 i~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~ 666 (1099)
+..+++|+.+.+.. .........+..+++|+.+.+.+. ....-...+..+++|+.+.+.. .+..++. .+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444555555542 122222223444445555554442 1111123344444455555433 2222222 223344444
Q ss_pred EEEc
Q 001326 667 ELQL 670 (1099)
Q Consensus 667 ~L~L 670 (1099)
.+.+
T Consensus 85 ~i~~ 88 (129)
T PF13306_consen 85 NIDI 88 (129)
T ss_dssp EEEE
T ss_pred cccc
Confidence 4444
No 474
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.58 E-value=0.13 Score=52.75 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=29.3
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
.|+|.|+|+.|+|||||++++.+....+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 36889999999999999999999988888544443
No 475
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.56 E-value=0.17 Score=58.00 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=28.3
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEE
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFV 89 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 89 (1099)
+...+.|.|.||.|||++.+++.+.++..-..++..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~ 56 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVT 56 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEe
Confidence 446788999999999999999999887754444333
No 476
>PRK13768 GTPase; Provisional
Probab=92.50 E-value=0.16 Score=54.91 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.++.|+|.||+||||++..+......+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999999998866544
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.50 E-value=0.09 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 478
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.49 E-value=0.14 Score=60.30 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhhcccCC-CCCCccccchhh---HHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 10 KPIRMGFQEYQRLKEKSVS-SDFKGLVGLSSR---IEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 10 ~~i~~i~~~v~~~l~~~~~-~~~~~~vGr~~~---~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.+++.-++.|.+|-..... ..-++-+..|+- .-+..+.+....+++.+|+|.|..|.||||||+.+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 16 GLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred chhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4777777777766422210 000111111110 112223333344578999999999999999999998865
No 479
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.48 E-value=0.12 Score=54.06 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCCCCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 50 VGFPDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 50 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.+.+..+.|.|+|++|+|||||++++.+.
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456788999999999999999999764
No 480
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.48 E-value=0.15 Score=57.94 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=55.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCc---eeEEEEeccccccCCCCHHHHHH--HHHHHHhcccccccCCChhHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFE---GRCFVSNVRVESENGHRLVYLRE--RVLSEIFEENIKIETPCLPEYI 129 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~--~ll~~l~~~~~~~~~~~~~~~l 129 (1099)
-..|.|+|+.|.||||+++++...+....+ ..+.+.+..+ .....+.. ....+ .............+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~~~~v~Q---~~v~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETISASVCQ---SEIPRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----Eeccccccccceeee---eeccccccCHHHHH
Confidence 479999999999999999999987754332 2233322211 11111100 00000 00000111256778
Q ss_pred HHHhcCCeEEEEEeCCCChhHHHHHh
Q 001326 130 GERLRRMKVLIVLDDVNKVGQLKYLA 155 (1099)
Q Consensus 130 ~~~L~~kr~LlVLDdv~~~~~~~~l~ 155 (1099)
+..|+..+-.+++..+.+.+..+...
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHH
Confidence 88899999999999999888776443
No 481
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.48 E-value=0.11 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
.|.|+|+.|.||||+|+.+.+++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999999864
No 482
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=1.8 Score=52.05 Aligned_cols=95 Identities=20% Similarity=0.283 Sum_probs=58.6
Q ss_pred CccccchhhHHHHHHhhcC----------CCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCC
Q 001326 32 KGLVGLSSRIEKLISLLCV----------GFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHR 101 (1099)
Q Consensus 32 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 101 (1099)
+++=|.++...+|.+-+.. +-....-|.+||++|.|||-+|++|+-+..=. |+. + + |
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlS-V-----K--G 738 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLS-V-----K--G 738 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEe-e-----c--C
Confidence 4677888888888876653 22335567799999999999999999875432 443 1 1 1
Q ss_pred HHHHHHHHHHHHhcccccccCCChhHHHHHHhcCCeEEEEEeCCCCh
Q 001326 102 LVYLRERVLSEIFEENIKIETPCLPEYIGERLRRMKVLIVLDDVNKV 148 (1099)
Q Consensus 102 ~~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~ 148 (1099)
. .+...-..+ +.....+...+.=..++++|.+|.+|..
T Consensus 739 P-ELLNMYVGq--------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 739 P-ELLNMYVGQ--------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred H-HHHHHHhcc--------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1 122221111 1111334444444468999999999754
No 483
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.47 E-value=0.12 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFN 77 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~ 77 (1099)
.++||+|..|.||||||+.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 484
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.46 E-value=0.23 Score=46.40 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=33.1
Q ss_pred ccccchhhHHHHHH----hhcC-CCCCEEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 33 GLVGLSSRIEKLIS----LLCV-GFPDFRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 33 ~~vGr~~~~~~l~~----~l~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
.++|-.-..+.+.. .+.. ..+..-|+...|.+|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 36666544444444 4433 3456889999999999999999998875
No 485
>PRK08506 replicative DNA helicase; Provisional
Probab=92.45 E-value=0.55 Score=55.68 Aligned_cols=53 Identities=25% Similarity=0.073 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEEeccccccCCCCHHHHHHHHHHHHh
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVSNVRVESENGHRLVYLRERVLSEIF 114 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 114 (1099)
-.++.|-|.+|+|||++|..+...+..+-..++|+. -.-...++..+++....
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS-------lEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS-------LEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe-------CcCCHHHHHHHHHHHhc
Confidence 458889999999999999999876644433455654 44566777777776543
No 486
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.45 E-value=0.14 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.++.|.|++|+|||||+++++++.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999976
No 487
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.44 E-value=0.21 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNL 78 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~ 78 (1099)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 488
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.41 E-value=0.29 Score=54.68 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=31.2
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.++.+.+........+|+|.|.+|+||||++..+...++.+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443334567899999999999999999998877654
No 489
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.40 E-value=0.13 Score=49.83 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 55 FRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 55 ~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.++|.|+|.+|+||||+.+.+-..+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999888776
No 490
>PRK14530 adenylate kinase; Provisional
Probab=92.37 E-value=0.11 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.|+|+|++|+||||+|+.+..+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 491
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.37 E-value=0.19 Score=56.90 Aligned_cols=52 Identities=33% Similarity=0.295 Sum_probs=40.4
Q ss_pred CCccccchhhHHHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCcee
Q 001326 31 FKGLVGLSSRIEKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGR 86 (1099)
Q Consensus 31 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 86 (1099)
...++|.++.+..+...+..+ +.+.+.|.+|+|||+||+.+...+...|-..
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 345999888888776666543 3567999999999999999999887655433
No 492
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.37 E-value=0.16 Score=55.28 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
++|+|+|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988876 455554
No 493
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.35 E-value=0.42 Score=49.39 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.6
Q ss_pred CEEEEEEEcCCCCcHHHHHHHHHHHH
Q 001326 54 DFRIVGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 54 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
.-.+++|.|..|.|||||.+.+....
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 494
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.33 E-value=0.17 Score=45.29 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhc
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLISW 81 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~~ 81 (1099)
++.+.|.+|+||||++..+...++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999998765
No 495
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.26 E-value=0.19 Score=55.02 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCEEEEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 53 PDFRIVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 53 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998877654
No 496
>PRK04182 cytidylate kinase; Provisional
Probab=92.25 E-value=0.12 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 001326 57 IVGIWGMAGIGKTTLAGAIFNLIS 80 (1099)
Q Consensus 57 vv~I~G~gGiGKTtLA~~v~~~~~ 80 (1099)
+|+|.|+.|.||||+|+++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 497
>PRK04328 hypothetical protein; Provisional
Probab=92.24 E-value=0.36 Score=52.11 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhccCceeEEEE
Q 001326 43 KLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWEFEGRCFVS 90 (1099)
Q Consensus 43 ~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 90 (1099)
.|-++|..+-+.-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455444445678899999999999999998765434456677775
No 498
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.24 E-value=0.7 Score=49.74 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh----ccCceeEEEEeccccccCCCCHHHHHHHHHHHHhcccc----cccCCC-h-
Q 001326 56 RIVGIWGMAGIGKTTLAGAIFNLIS----WEFEGRCFVSNVRVESENGHRLVYLRERVLSEIFEENI----KIETPC-L- 125 (1099)
Q Consensus 56 ~vv~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~~~-~- 125 (1099)
+-++|.|-+|+|||+|+..+.++.. .+-+.++|.. +.+ .......+.+++...-..+.. ...+.. .
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGe---R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGI---TMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecc---ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 5679999999999999999887643 1234455553 433 334455555555443111110 011111 1
Q ss_pred -------hHHHHHHh---cCCeEEEEEeCCCChh
Q 001326 126 -------PEYIGERL---RRMKVLIVLDDVNKVG 149 (1099)
Q Consensus 126 -------~~~l~~~L---~~kr~LlVLDdv~~~~ 149 (1099)
.-.+.+.+ .++++|+++||+....
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 11223333 2689999999996554
No 499
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.18 E-value=0.3 Score=54.30 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=30.9
Q ss_pred HHHHHhhcCCCCCEEEEEEEcCCCCcHHHHHHHHHHHHhcc
Q 001326 42 EKLISLLCVGFPDFRIVGIWGMAGIGKTTLAGAIFNLISWE 82 (1099)
Q Consensus 42 ~~l~~~l~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 82 (1099)
.++.+.+........+|+|.|.+|+||||++..+......+
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444454444568999999999999999999998865443
No 500
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.16 E-value=0.096 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 001326 58 VGIWGMAGIGKTTLAGAIFNLI 79 (1099)
Q Consensus 58 v~I~G~gGiGKTtLA~~v~~~~ 79 (1099)
|+|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
Done!